Citrus Sinensis ID: 019066
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 346 | ||||||
| 224069876 | 575 | predicted protein [Populus trichocarpa] | 0.904 | 0.544 | 0.674 | 1e-118 | |
| 255580517 | 419 | ATP binding protein, putative [Ricinus c | 0.846 | 0.699 | 0.679 | 1e-114 | |
| 225470035 | 384 | PREDICTED: uncharacterized protein LOC10 | 0.849 | 0.765 | 0.688 | 1e-113 | |
| 449464106 | 436 | PREDICTED: uncharacterized protein LOC10 | 0.887 | 0.704 | 0.639 | 1e-109 | |
| 356567802 | 429 | PREDICTED: uncharacterized protein LOC10 | 0.875 | 0.706 | 0.590 | 2e-99 | |
| 357505167 | 487 | hypothetical protein MTR_7g055730 [Medic | 0.878 | 0.624 | 0.596 | 2e-98 | |
| 357505165 | 475 | hypothetical protein MTR_7g055720 [Medic | 0.979 | 0.713 | 0.544 | 3e-98 | |
| 388500938 | 474 | unknown [Medicago truncatula] | 0.979 | 0.715 | 0.544 | 4e-98 | |
| 297790788 | 479 | hypothetical protein ARALYDRAFT_497092 [ | 0.820 | 0.592 | 0.551 | 7e-83 | |
| 42570140 | 479 | P-loop containing nucleoside triphosphat | 0.820 | 0.592 | 0.525 | 2e-77 |
| >gi|224069876|ref|XP_002303066.1| predicted protein [Populus trichocarpa] gi|222844792|gb|EEE82339.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/316 (67%), Positives = 246/316 (77%), Gaps = 3/316 (0%)
Query: 34 EGSRDSWDSL---VDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVG 90
EGSR L +Q++ +REVLQSYDQL+ R SL + K+KILSYTPG W+ENV
Sbjct: 84 EGSRIPSSFLELQANQKKASTAYREVLQSYDQLKDRSKSLEEGKSKILSYTPGGWMENVI 143
Query: 91 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150
GM LSD+DVP TT LL+IGPKGSGKSSL+NRISKVFE+DKFASERAQV+YNSS DGTYF
Sbjct: 144 GMKLSDFDVPNTTVLLVIGPKGSGKSSLINRISKVFEDDKFASERAQVSYNSSAADGTYF 203
Query: 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMR 210
LQEY IPR S+SF LYDTR LS D+ D+ NM+K WI +GV H EL+IR SD+S LRN+M+
Sbjct: 204 LQEYMIPRSSSSFCLYDTRGLSYDSYDSANMLKNWITKGVHHRELIIRPSDNSHLRNQMK 263
Query: 211 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 270
CKA GC+ R V FVIFVVDGLAVLKSM+ D K+Y Q++A TF+CPY+SF DD
Sbjct: 264 CKARGNGCQSKETRMVTFVIFVVDGLAVLKSMDNLVDEGKKYTQMIAKTFDCPYISFNDD 323
Query: 271 KPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLE 330
KPVVVVTHGDLLSL DRAR+R +LGELLGIPPAKQIFDIPES DP EL IV+ML Y LE
Sbjct: 324 KPVVVVTHGDLLSLNDRARVRVHLGELLGIPPAKQIFDIPESHDPVTELTIVNMLHYSLE 383
Query: 331 HADRNLSCKSCARNKV 346
HAD+NL K KV
Sbjct: 384 HADKNLPHKRQIAKKV 399
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580517|ref|XP_002531083.1| ATP binding protein, putative [Ricinus communis] gi|223529329|gb|EEF31297.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/293 (67%), Positives = 233/293 (79%)
Query: 44 VDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT 103
+QR++ F+E+LQSYDQLR+R SL +AK+KILSYTPG W E VGGM LSDY+VPKTT
Sbjct: 69 ANQRKKWKAFKELLQSYDQLRSRAESLDEAKSKILSYTPGGWKEKVGGMKLSDYNVPKTT 128
Query: 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSF 163
+LLL+GP+GSGKSSLVNRISKVF++DKFA ERAQV+YN S G+GTYFLQEY IP S SF
Sbjct: 129 TLLLVGPRGSGKSSLVNRISKVFDDDKFAPERAQVSYNPSAGEGTYFLQEYMIPGCSTSF 188
Query: 164 SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223
LYDTR D++ DNI M+K W+ GV HGEL +R+ D SSLR RM+CK G +
Sbjct: 189 CLYDTRGFFDNSYDNIEMLKYWMTRGVCHGELTVRKCDDSSLRTRMKCKVRYNGSQSKKN 248
Query: 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLS 283
R VNFVIFVV+GLAVLKSM + + QY ++A+ FNCPY SF+DDKPVVVVTHGDLLS
Sbjct: 249 RTVNFVIFVVNGLAVLKSMGSEVEKGNQYTDMIASAFNCPYASFKDDKPVVVVTHGDLLS 308
Query: 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 336
L+DR RIR +LGELLGIPPAKQIFDIPES DP EL I+DMLRY LEHAD NL
Sbjct: 309 LSDRTRIRVHLGELLGIPPAKQIFDIPESCDPVTELTIIDMLRYSLEHADNNL 361
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470035|ref|XP_002265228.1| PREDICTED: uncharacterized protein LOC100246086 [Vitis vinifera] gi|297741779|emb|CBI33051.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/295 (68%), Positives = 235/295 (79%), Gaps = 1/295 (0%)
Query: 46 QRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL 105
QRRR V+ ++LQSYD +R R +L AK++ILSYTPGAWIE GGM SDY+VP+TTSL
Sbjct: 28 QRRRSLVYSQILQSYDDVRIRTNALEKAKSRILSYTPGAWIEMSGGMKFSDYNVPETTSL 87
Query: 106 LLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 165
+L+GPKGSGKSSL+N+IS+VFE+DKFA ERAQV+YN SVGDGTYFLQEY IPRGS SF L
Sbjct: 88 ILVGPKGSGKSSLINKISRVFEDDKFAPERAQVSYNLSVGDGTYFLQEYMIPRGSTSFCL 147
Query: 166 YDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225
YDTR LSD +SDN+ M+K WI +GVRHGEL IR SDS S+R RM+CKA + G S R
Sbjct: 148 YDTRGLSDVSSDNMQMLKHWITKGVRHGELAIRNSDSPSIRARMKCKARQSGYNSSKTRL 207
Query: 226 VNFVIFVVDGLAVLKSMEGDSDVEKQ-YNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSL 284
VNFVIFVV+GL+VLKS++ D Q Y Q +A F CPYLSFRDD PVVVVTHGDLLSL
Sbjct: 208 VNFVIFVVNGLSVLKSIDSCDDGASQFYIQTIAEMFCCPYLSFRDDMPVVVVTHGDLLSL 267
Query: 285 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCK 339
+DRAR+R +LGE LGI P KQIFDIPES EL I+DMLRY LEHADRNL CK
Sbjct: 268 SDRARVRVHLGEHLGISPGKQIFDIPESCGKATELTIIDMLRYSLEHADRNLPCK 322
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464106|ref|XP_004149770.1| PREDICTED: uncharacterized protein LOC101208586 [Cucumis sativus] gi|449520910|ref|XP_004167475.1| PREDICTED: uncharacterized protein LOC101225331 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/308 (63%), Positives = 239/308 (77%), Gaps = 1/308 (0%)
Query: 32 DDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGG 91
+ E S + D + + RR+ V RE+++SYDQLR R +L AK KILSY+PGAWIE VGG
Sbjct: 67 ESEYSSAALDVDICRMRRNRVHREIIESYDQLRIRSENLNQAKQKILSYSPGAWIEQVGG 126
Query: 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151
M LSDYD+P+TTSL+LIGPKGSGKSSL+NRISKVFE D FA ERAQV+ NSS DGT+FL
Sbjct: 127 MKLSDYDIPQTTSLILIGPKGSGKSSLINRISKVFEEDHFAPERAQVSCNSSGEDGTFFL 186
Query: 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 211
EY I R S SF LYDTR LS+D SDNI M+K W+ +GV HG+LV R+SD+SSL NRMRC
Sbjct: 187 HEYMILRKSKSFCLYDTRGLSNDPSDNIEMLKQWMSKGVHHGKLVTRKSDASSLINRMRC 246
Query: 212 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 271
KA + V+R +NFVIFVVDGL+VLKS++GD D +K Y++++ T FNCPYLS+ DDK
Sbjct: 247 KARQSFPRSRVVRIINFVIFVVDGLSVLKSIDGD-DKQKDYDRVITTAFNCPYLSYGDDK 305
Query: 272 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 331
PVVV+THGDLLS + R+R +LG LLGIP KQIFDIP+ DP EL I+DML YCLEH
Sbjct: 306 PVVVLTHGDLLSFAENVRVRGHLGNLLGIPSTKQIFDIPDRYDPVTELTIIDMLHYCLEH 365
Query: 332 ADRNLSCK 339
AD+NL K
Sbjct: 366 ADKNLPPK 373
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356567802|ref|XP_003552104.1| PREDICTED: uncharacterized protein LOC100783278 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/305 (59%), Positives = 226/305 (74%), Gaps = 2/305 (0%)
Query: 44 VDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT 103
V++RRR ++E+LQ D+L+ L K KIL Y PGAWIE GG+ +SDYDVPKTT
Sbjct: 70 VNERRRVINYQEILQCCDELKIHSKDLKREKQKILRYKPGAWIEKAGGLKISDYDVPKTT 129
Query: 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSF 163
LLL+GP+GSGKSSL+NRISKV E+D+FA RAQ +YNS +GDGT FLQEY IPR SNS
Sbjct: 130 CLLLVGPRGSGKSSLINRISKVVEDDRFAPARAQESYNSLLGDGTSFLQEYMIPRYSNSI 189
Query: 164 SLYDTRSLSDDAS--DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221
LYDTRSLSD++ +NI M+K W+ +GV HGELV+R++D+ LR ++ KAHK G S
Sbjct: 190 CLYDTRSLSDNSEKDENIRMLKSWMTKGVHHGELVVRKTDNQRLRKSLKGKAHKKGYLSS 249
Query: 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDL 281
RKVNFVI+VV+GL VLK+ME D +E Q Q + +TFNCP+LSF+DDKPV+V THGDL
Sbjct: 250 KTRKVNFVIYVVNGLLVLKAMENDGALETQCVQSIVSTFNCPFLSFKDDKPVLVFTHGDL 309
Query: 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCKSC 341
LS ++RA +R +LG LLGIPP KQIFDIP+ P E I+ MLRY L HADR+ +S
Sbjct: 310 LSFSERALVREHLGTLLGIPPTKQIFDIPDCDCPATESAIIGMLRYSLAHADRHFPQRSK 369
Query: 342 ARNKV 346
+KV
Sbjct: 370 VMDKV 374
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505167|ref|XP_003622872.1| hypothetical protein MTR_7g055730 [Medicago truncatula] gi|355497887|gb|AES79090.1| hypothetical protein MTR_7g055730 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 183/307 (59%), Positives = 231/307 (75%), Gaps = 3/307 (0%)
Query: 43 LVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT 102
+V +R+R ++++E+LQSYD+L+ SL AK KIL Y PG WIE G+ L DYDVP+T
Sbjct: 65 VVGERKRLSIYQEILQSYDELKIDSISLKQAKEKILRYRPGTWIEKARGLKLRDYDVPET 124
Query: 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNS 162
TSL+L+GP GSGKSSL+NRISKVF++DKFA RAQV+YNS GDGTYFL+E+ IPR SNS
Sbjct: 125 TSLILVGPSGSGKSSLINRISKVFDDDKFAPTRAQVSYNSLRGDGTYFLREHMIPRDSNS 184
Query: 163 FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 222
LYDTRSLS+ + +N M+K W+ EGV HGELVIR D+ +L ++CK +K G S
Sbjct: 185 ICLYDTRSLSNKSHENNEMLKNWMTEGVHHGELVIRSKDNQTLTESLKCKGNKKGFFSSK 244
Query: 223 IRKVNFVIFVVDGLAVLKSME-GDSDVEKQY-NQIVAT-TFNCPYLSFRDDKPVVVVTHG 279
RKVNFVI+V++GL+VL ME D + +Y +IV+T FN P+LSF+DDKPV+V+THG
Sbjct: 245 SRKVNFVIYVLNGLSVLNMMENADGAFKARYIEEIVSTFNFNNPFLSFKDDKPVLVLTHG 304
Query: 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNLSCK 339
DLLSL+DRAR+R YLGE+LGIPP KQIFDIPE D E I+ MLRY LEHAD N+ K
Sbjct: 305 DLLSLSDRARVRVYLGEVLGIPPTKQIFDIPECDDLVTESAIIGMLRYTLEHADNNIPQK 364
Query: 340 SCARNKV 346
+ NKV
Sbjct: 365 TNVMNKV 371
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357505165|ref|XP_003622871.1| hypothetical protein MTR_7g055720 [Medicago truncatula] gi|355497886|gb|AES79089.1| hypothetical protein MTR_7g055720 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 185/340 (54%), Positives = 237/340 (69%), Gaps = 1/340 (0%)
Query: 8 SRFFTPGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRI 67
SR + ++ ++ D +S + + + DS++ +R+R +++E+LQSYD L+
Sbjct: 36 SRGLQDKDNSVNEKNELDFGEVSEESVATSSAADSVIGERKRLGIYQEILQSYDALKIDS 95
Query: 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127
+L +AK KILSY PG W E G+ L DYDVP+TT LLL+GP GSGKSSL+NRISKVF+
Sbjct: 96 KNLKEAKEKILSYRPGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISKVFD 155
Query: 128 NDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIM 187
DKFA RAQV+YNS G+GT FL+EY IPR SNS LYDTRSLSDD+ +N M+K W+
Sbjct: 156 EDKFAPARAQVSYNSIRGNGTCFLREYMIPRDSNSICLYDTRSLSDDSHENNKMLKNWMT 215
Query: 188 EGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDS 246
+GVRHGELV R D L ++ K K G S RKVN+VI V++GL+VL +E
Sbjct: 216 KGVRHGELVARGMDDKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVIENAGG 275
Query: 247 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQI 306
+E+ Y Q + +TFNCP+LSF+DDKPV+V+THGDLLSL+DRAR+R YLGELLGIPP KQI
Sbjct: 276 ALEEWYIQQIVSTFNCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIPPTKQI 335
Query: 307 FDIPESSDPENELIIVDMLRYCLEHADRNLSCKSCARNKV 346
FDIP+ D E IV MLRY LEHAD N KS NK+
Sbjct: 336 FDIPDCDDLVTESAIVGMLRYTLEHADGNFPQKSNVMNKI 375
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500938|gb|AFK38535.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 185/340 (54%), Positives = 237/340 (69%), Gaps = 1/340 (0%)
Query: 8 SRFFTPGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRI 67
SR + ++ ++ D +S + + + DS++ +R+R +++E+LQSYD L+
Sbjct: 36 SRGLQDKDNSVNEKNELDFGEVSEESVATSSAADSVIGERKRLGIYQEILQSYDALKIDS 95
Query: 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127
+L +AK KILSY PG W E G+ L DYDVP+TT LLL+GP GSGKSSL+NRISKVF+
Sbjct: 96 KNLKEAKEKILSYRPGTWTEKAKGLKLCDYDVPETTCLLLVGPSGSGKSSLINRISKVFD 155
Query: 128 NDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIM 187
DKFA RAQV+YNS G+GT FL+EY IPR SNS LYDTRSLSDD+ +N M+K W+
Sbjct: 156 EDKFAPARAQVSYNSIRGNGTCFLREYMIPRDSNSICLYDTRSLSDDSHENNKMLKNWMT 215
Query: 188 EGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME-GDS 246
+GVRHGELV R D L ++ K K G S RKVN+VI V++GL+VL +E
Sbjct: 216 KGVRHGELVARGMDDKRLSKNLKLKGDKKGFFSSKSRKVNYVICVLNGLSVLNVIENAGG 275
Query: 247 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQI 306
+E+ Y Q + +TFNCP+LSF+DDKPV+V+THGDLLSL+DRAR+R YLGELLGIPP KQI
Sbjct: 276 ALEEWYIQQIVSTFNCPFLSFKDDKPVLVLTHGDLLSLSDRARVRAYLGELLGIPPTKQI 335
Query: 307 FDIPESSDPENELIIVDMLRYCLEHADRNLSCKSCARNKV 346
FDIP+ D E IV MLRY LEHAD N KS NK+
Sbjct: 336 FDIPDCDDLVTESAIVGMLRYTLEHADGNFPQKSNVMNKI 375
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790788|ref|XP_002863279.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] gi|297309113|gb|EFH39538.1| hypothetical protein ARALYDRAFT_497092 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 165/299 (55%), Positives = 214/299 (71%), Gaps = 15/299 (5%)
Query: 41 DSLVDQRRRDAVFREVLQSYD-QLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 99
+ + D RRR+ ++E+LQSYD LR+ L A+N+IL YTPG+W + + LSDYDV
Sbjct: 47 NHVTDLRRREKSYQEILQSYDVLLRSSKRKLRQARNEILRYTPGSWSD----VKLSDYDV 102
Query: 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 159
PKTTS++L+GPKG+GKSSLVN+IS+V E+D+F RAQ ++ + GT+F+QEY IPRG
Sbjct: 103 PKTTSIMLVGPKGAGKSSLVNKISRVIEDDEFFPARAQESFGTQSKGGTFFVQEYMIPRG 162
Query: 160 -SNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 217
S SF LYDTR LS +SDN MI+ W+ +GV HGE VI SDSS L++R+ + G
Sbjct: 163 GSASFCLYDTRGLSHISSSDNTRMIEQWMTKGVHHGEPVIWTSDSSDLKDRL-IRDGGTG 221
Query: 218 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 277
E RKVN VIFV++ + +LKSME E Y +++T FNCP LSF+DDKP VV+T
Sbjct: 222 YER---RKVNSVIFVINAVEILKSME----CETSYAHMISTAFNCPLLSFKDDKPAVVMT 274
Query: 278 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 336
HGD+LSL DRAR+R +LGELLGIPPAKQIFDIPES D L I ++L Y L+HAD+N
Sbjct: 275 HGDMLSLEDRARVRVFLGELLGIPPAKQIFDIPESRDIATALTICNLLCYSLDHADKNF 333
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42570140|ref|NP_849371.2| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] gi|332657820|gb|AEE83220.1| P-loop containing nucleoside triphosphate hydrolase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/299 (52%), Positives = 209/299 (69%), Gaps = 15/299 (5%)
Query: 41 DSLVDQRRRDAVFREVLQSYDQL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDV 99
+ + D RRR+ ++E+LQS+D L RT L A+N+ILSYTPG+W + + LSDY++
Sbjct: 46 NHVTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPGSWSD----VKLSDYNI 101
Query: 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 159
PKTTS++L+GPKG+GKSSLVN+I++V E+D F +RAQ ++ + GTYF+QEY I RG
Sbjct: 102 PKTTSIMLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRG 161
Query: 160 -SNSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 217
S SF LYDTR LS +SDN +MI+ W+ GV HGE VI SDSS L++R+ + G
Sbjct: 162 GSASFCLYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLKDRL-IRDGGTG 220
Query: 218 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 277
E RKVN +IFVV+ + +LKSME E Y ++ T FN P L F+DDKP VV+T
Sbjct: 221 YER---RKVNSIIFVVNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMT 273
Query: 278 HGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRNL 336
HGD+LS +RAR+R +LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N
Sbjct: 274 HGDMLSREERARVRVFLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKNF 332
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 346 | ||||||
| TAIR|locus:2123236 | 481 | AT4G13030 [Arabidopsis thalian | 0.812 | 0.584 | 0.530 | 1.4e-73 | |
| ZFIN|ZDB-GENE-030131-9145 | 313 | si:dkey-79f11.5 "si:dkey-79f11 | 0.398 | 0.440 | 0.308 | 1.4e-05 |
| TAIR|locus:2123236 AT4G13030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 157/296 (53%), Positives = 208/296 (70%)
Query: 43 LVDQRRRDAVFREVLQSYDQL-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPK 101
+ D RRR+ ++E+LQS+D L RT L A+N+ILSYTPG+W + + LSDY++PK
Sbjct: 50 VTDLRRREKAYQEILQSHDLLLRTSKRKLRQARNEILSYTPGSWSD----VKLSDYNIPK 105
Query: 102 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG-S 160
TTS++L+GPKG+GKSSLVN+I++V E+D F +RAQ ++ + GTYF+QEY I RG S
Sbjct: 106 TTSIMLVGPKGAGKSSLVNKITRVIEDDAFLLDRAQESFGTPSKGGTYFVQEYMISRGGS 165
Query: 161 NSFSLYDTRSLSD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 219
SF LYDTR LS +SDN +MI+ W+ GV HGE VI SDSS L++R+ + G E
Sbjct: 166 ASFCLYDTRGLSRISSSDNTSMIEQWMTRGVLHGEPVIWASDSSDLKDRL-IRDGGTGYE 224
Query: 220 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 279
RKVN +IFVV+ + +LKSME E Y ++ T FN P L F+DDKP VV+THG
Sbjct: 225 R---RKVNSIIFVVNAVEILKSME----CETSYASMITTAFNSPILLFKDDKPAVVMTHG 277
Query: 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEHADRN 335
D+LS +RAR+R +LGELLGIPP KQIFDIPES D + I ++L Y L+HAD+N
Sbjct: 278 DMLSREERARVRVFLGELLGIPPHKQIFDIPESRDTATAITICNLLCYSLQHADKN 333
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| ZFIN|ZDB-GENE-030131-9145 si:dkey-79f11.5 "si:dkey-79f11.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 50/162 (30%), Positives = 82/162 (50%)
Query: 85 WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144
W+EN TLSD +V K +L++GP G+GKSS +N I+ VF+ + S +A V NS+
Sbjct: 57 WLEN---FTLSDPNV-KDIKILVVGPSGAGKSSFINSINSVFQ--RRISSKALV--NSAG 108
Query: 145 GDGTYF---LQEYTIPRGSNS--FSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGELV 196
GD F L+ TI G S F +D L + S ++IK + V+ G
Sbjct: 109 GDNHSFTEKLKRLTIKNGKTSLPFVFFDIMGLEAEEFHGSKTEDIIKA-VFGHVKDG--- 164
Query: 197 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAV 238
+ ++ S+ + + H +PS+ + V++++DG V
Sbjct: 165 YKFNEEQSIDYKDQ---HYTS-DPSLSDQCFCVVYIIDGKIV 202
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 346 346 0.00098 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 613 (65 KB)
Total size of DFA: 227 KB (2125 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.56u 0.17s 29.73t Elapsed: 00:00:01
Total cpu time: 29.56u 0.17s 29.73t Elapsed: 00:00:01
Start: Fri May 10 19:17:02 2013 End: Fri May 10 19:17:03 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_II002486 | hypothetical protein (575 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 346 | |||
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 0.004 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 104 SLLLIGPKGSGKSSLVNRISKVFENDKF 131
+LL+GP G+GKS L R++ N
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPV 28
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This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.98 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.98 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.98 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.98 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.98 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.98 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.98 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.97 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.97 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.96 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.96 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.96 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.96 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.95 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.95 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.95 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.95 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.95 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.94 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.94 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.93 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.93 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.93 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.92 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.91 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.91 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.91 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.89 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.88 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.87 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.85 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.85 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.85 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.85 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.85 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.84 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.83 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.83 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.83 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.82 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.79 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.78 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.77 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.76 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.76 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.75 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.74 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.73 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.73 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.72 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.71 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.67 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.67 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.66 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.63 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.6 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.58 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.56 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.52 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.5 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.46 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.45 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.43 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.38 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.37 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.36 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.36 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.35 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.3 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.3 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.27 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.21 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.19 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.09 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.03 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.03 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.02 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.01 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.98 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 98.88 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 98.87 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.87 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.76 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.76 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.71 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.66 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.65 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 98.64 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.62 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.56 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.54 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.52 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 98.44 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.39 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 98.37 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.34 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.33 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.32 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.32 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.3 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.3 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.29 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.29 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.26 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.25 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.25 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.24 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.24 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.23 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.23 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.22 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.19 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.18 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 98.17 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.13 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.11 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.11 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.09 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.09 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.09 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.08 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.06 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 98.06 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.05 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.05 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.05 | |
| TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. | 98.05 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.05 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.03 | |
| PF13476 | 202 | AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V | 98.0 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 97.99 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.99 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 97.99 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.96 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 97.95 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 97.95 | |
| PRK08472 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.95 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 97.94 | |
| PRK05922 | 434 | type III secretion system ATPase; Validated | 97.94 | |
| PRK05688 | 451 | fliI flagellum-specific ATP synthase; Validated | 97.93 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 97.93 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.91 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phos | 97.9 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.89 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.89 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.86 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 97.86 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 97.85 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.85 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 97.84 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 97.84 | |
| PRK08972 | 444 | fliI flagellum-specific ATP synthase; Validated | 97.81 | |
| cd02026 | 273 | PRK Phosphoribulokinase (PRK) is an enzyme involve | 97.79 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.79 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.78 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=395.69 Aligned_cols=210 Identities=19% Similarity=0.255 Sum_probs=183.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+|+|++.. + |++|||+|.+||+++|+||||||||||||||++|.+ |++|+|.++|.++...
T Consensus 1 ~mi~i~~l~K~fg~~~---V---Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-----~~~G~I~i~g~~~~~~ 69 (240)
T COG1126 1 MMIEIKNLSKSFGDKE---V---LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-----PDSGSITVDGEDVGDK 69 (240)
T ss_pred CeEEEEeeeEEeCCeE---E---ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-----CCCceEEECCEeccch
Confidence 3799999999998744 4 666999999999999999999999999999999999 9999999999877411
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .....|...|+|||+.++|+. ++.+|+.+++..-...++++.++++.++|+++||.+
T Consensus 70 ~--------------~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~------- 128 (240)
T COG1126 70 K--------------DILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD------- 128 (240)
T ss_pred h--------------hHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-------
Confidence 0 122334455666777777776 788888888776667788999999999999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
..+.||.+||||||||||||||| |||||+||+ |.|+|+||| .+
T Consensus 129 ----------ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F 198 (240)
T COG1126 129 ----------KADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF 198 (240)
T ss_pred ----------hhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH
Confidence 57999999999999999999999 999999996 999999999 68
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+.+.||||+ +|++|+|+++|+++++|.+|.++.++.|+..
T Consensus 199 Ar~Vadrvi-Fmd~G~iie~g~p~~~f~~p~~~R~~~FL~~ 238 (240)
T COG1126 199 AREVADRVI-FMDQGKIIEEGPPEEFFDNPKSERTRQFLSK 238 (240)
T ss_pred HHHhhheEE-EeeCCEEEEecCHHHHhcCCCCHHHHHHHHh
Confidence 999999995 6999999999999999999999999998864
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-52 Score=383.62 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=187.5
Q ss_pred cEEEeeeEEEeCCC--CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~--~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
||++++|+|.|..+ ..+.+ |+||||+|++||++||||.||||||||+|||++|.+ |++|+|+++|+++..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~a---l~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-----PtsG~v~v~G~di~~ 72 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTA---LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-----PTSGSVFVDGQDLTA 72 (339)
T ss_pred CeEEEeeeeeeccCCCCceee---eccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-----CCCceEEEcCEeccc
Confidence 68999999999752 22457 555999999999999999999999999999999999 999999999999862
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhH-HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~-~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.. +.-+...|..++|+||+++++. .+|.+|+++++...+ .++.+.++++.++|+.+||.+
T Consensus 73 l~------------~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~d------ 133 (339)
T COG1135 73 LS------------EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSD------ 133 (339)
T ss_pred CC------------hHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChh------
Confidence 11 1233445556677777777776 489999999988665 567889999999999999998
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++||.+|||||||||+||||| |||||+||+ |.||++|||
T Consensus 134 -----------k~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm 202 (339)
T COG1135 134 -----------KADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM 202 (339)
T ss_pred -----------hhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 57999999999999999999999 999999997 999999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+.+.++|||++| |++|++++.|+..++|.+|.++-++.++....
T Consensus 203 ~Vvk~ic~rVav-m~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 203 EVVKRICDRVAV-LDQGRLVEEGTVSEVFANPKHAITQEFIGETL 246 (339)
T ss_pred HHHHHHhhhheE-eeCCEEEEeccHHHhhcCcchHHHHHHHHhhc
Confidence 679999999986 99999999999999999999999999988543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=364.43 Aligned_cols=210 Identities=19% Similarity=0.268 Sum_probs=179.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||||.|++.. + ++|+||+|++||+++++|||||||||++|+|+++++ |++|+|+++|+++..
T Consensus 1 MI~~~nvsk~y~~~~---a---v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-----pt~G~I~i~g~~i~~-- 67 (309)
T COG1125 1 MIEFENVSKRYGNKK---A---VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-----PTSGEILIDGEDISD-- 67 (309)
T ss_pred CceeeeeehhcCCce---e---eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-----CCCceEEECCeeccc--
Confidence 689999999998643 4 666999999999999999999999999999999999 999999999999871
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
..... -|+++||+.|...+|+.+ |.||+.+.+.. . ..+++..++++.++|+.+||++.-
T Consensus 68 -~d~~~-LRr~IGYviQqigLFPh~Tv~eNIa~VP~L-----------~-~w~k~~i~~r~~ELl~lvgL~p~~------ 127 (309)
T COG1125 68 -LDPVE-LRRKIGYVIQQIGLFPHLTVAENIATVPKL-----------L-GWDKERIKKRADELLDLVGLDPSE------ 127 (309)
T ss_pred -CCHHH-HHHhhhhhhhhcccCCCccHHHHHHhhhhh-----------c-CCCHHHHHHHHHHHHHHhCCCHHH------
Confidence 11111 155777777777777666 66666655431 1 234677889999999999998733
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
++++||++|||||+|||.+|||| |||+++||+ ++|||+||| ++
T Consensus 128 ---------~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidE 198 (309)
T COG1125 128 ---------YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDE 198 (309)
T ss_pred ---------HhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence 68999999999999999999999 999999996 999999999 68
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 322 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 322 (346)
+.+++|||++ |++|+|+..++|++++.+|.++.++.|+..-
T Consensus 199 A~kLadri~v-m~~G~i~Q~~~P~~il~~Pan~FV~~f~g~~ 239 (309)
T COG1125 199 ALKLADRIAV-MDAGEIVQYDTPDEILANPANDFVEDFFGES 239 (309)
T ss_pred HHhhhceEEE-ecCCeEEEeCCHHHHHhCccHHHHHHHhccc
Confidence 9999999976 9999999999999999999999988888754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=382.13 Aligned_cols=213 Identities=15% Similarity=0.202 Sum_probs=181.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.|+++||+++|++. .+ ++|+||+|++||+++|+||||||||||||+|+||+. |++|+|.++|+++.
T Consensus 3 ~~~l~i~~v~k~yg~~---~a---v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-----p~~G~I~l~G~~i~- 70 (352)
T COG3842 3 KPALEIRNVSKSFGDF---TA---VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-----PSSGEILLDGEDIT- 70 (352)
T ss_pred CceEEEEeeeeecCCe---eE---EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC-
Confidence 4579999999999842 35 666999999999999999999999999999999999 99999999999997
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.....+|.++++||+..+|+.+ +|.+||+||+...+..++++.++++.++|+.++|.+
T Consensus 71 -----~lpp~kR~ig~VFQ~YALFPHl----------tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~------- 128 (352)
T COG3842 71 -----DVPPEKRPIGMVFQSYALFPHM----------TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG------- 128 (352)
T ss_pred -----CCChhhcccceeecCcccCCCC----------cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-------
Confidence 2223344555555555444333 677777787774444455678899999999999999
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+.+++|++||||||||||||||| |||.|+||. |+|.|+||| .
T Consensus 129 ----------~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 129 ----------FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred ----------hhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 67999999999999999999999 999999984 999999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 325 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~ 325 (346)
++..++|||+| |++|+|...|+|++++..|.+.++..|+...+.+
T Consensus 199 EAl~msDrI~V-m~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~l 243 (352)
T COG3842 199 EALAMSDRIAV-MNDGRIEQVGTPEEIYERPATRFVADFIGESNIF 243 (352)
T ss_pred HHhhhccceEE-ccCCceeecCCHHHHhhCcchHHHHHHhCcceee
Confidence 79999999975 9999999999999999999999999998865544
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=354.55 Aligned_cols=219 Identities=20% Similarity=0.229 Sum_probs=191.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.++++||++.|+... + |+||||+|++++++|||||||||||||||+++++.+.......+|+|.++|+++..
T Consensus 5 ~~~~~~~~l~~yYg~~~---a---L~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGDKH---A---LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECchh---h---hccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 45699999999998654 5 66699999999999999999999999999999999854444556999999999861
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .+.+.+.|...|||||.++.|+.++++||++|++.++..+ ++.++.+++.|+.++|++++.+.
T Consensus 79 ------~-------~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDr-- 142 (253)
T COG1117 79 ------P-------KVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDR-- 142 (253)
T ss_pred ------C-------CCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHH--
Confidence 1 2345566777888888888888999999999999887766 78899999999999999877433
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
+++.+..||||||||++||||| |||||+||+ ..||||||| ..+
T Consensus 143 -----------L~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQA 211 (253)
T COG1117 143 -----------LHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQA 211 (253)
T ss_pred -----------hhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHH
Confidence 7889999999999999999999 999999996 899999999 579
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+++|+++ ||..|+++|.|+++++|.+|.++.|+.++.
T Consensus 212 aRvSD~ta-Ff~~G~LvE~g~T~~iF~~P~~~~TedYis 249 (253)
T COG1117 212 ARVSDYTA-FFYLGELVEFGPTDKIFTNPKHKRTEDYIS 249 (253)
T ss_pred HHHhHhhh-hhcccEEEEEcCHHhhhcCccHHHHHHHhc
Confidence 99999998 499999999999999999999999888764
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-48 Score=347.26 Aligned_cols=216 Identities=14% Similarity=0.179 Sum_probs=175.7
Q ss_pred CcEEEeeeEEEeCCCCc-eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~-~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
++|+++|+++.|+.+.. .++ |++|||+|.+||++||+|+||||||||.|+|+|+.+ |++|+|.++|+.+..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~---l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-----p~~G~I~~~G~~~~~ 73 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHA---LNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-----PSSGSILLDGKPLAP 73 (252)
T ss_pred ceEEEeceEEEecCCcchhhh---hcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCceEEECCcccCc
Confidence 47999999999987652 135 666999999999999999999999999999999999 999999999987651
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.......++.+.++|||+..- +-|. +|.+-+..++..++ ....++++.++|+.+||++.
T Consensus 74 ---~~~~~~~~~~VQmVFQDp~~S---------LnP~~tv~~~l~Epl~~~~---~~~~~~~i~~~L~~VgL~~~----- 133 (252)
T COG1124 74 ---KKRAKAFYRPVQMVFQDPYSS---------LNPRRTVGRILSEPLRPHG---LSKSQQRIAELLDQVGLPPS----- 133 (252)
T ss_pred ---cccchhhccceeEEecCCccc---------cCcchhHHHHHhhhhccCC---ccHHHHHHHHHHHHcCCCHH-----
Confidence 111112344566777776432 2222 66666666555432 23445569999999999985
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
+++++|++|||||+||+|||||| |||||+||. +.|+|+|||
T Consensus 134 -----------~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl 202 (252)
T COG1124 134 -----------FLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL 202 (252)
T ss_pred -----------HHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH
Confidence 57999999999999999999999 999999984 889999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 324 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 324 (346)
..+..+||||+| |++|+|++.+++++++..|.++|++.++.+...
T Consensus 203 ~~v~~~cdRi~V-m~~G~ivE~~~~~~l~~~~~h~ytr~Ll~a~~~ 247 (252)
T COG1124 203 ALVEHMCDRIAV-MDNGQIVEIGPTEELLSHPSHPYTRELLEAVPS 247 (252)
T ss_pred HHHHHHhhheee-eeCCeEEEeechhhhhcCCccHHHHHHHHhhhc
Confidence 578899999976 999999999999999999999999999886543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=393.78 Aligned_cols=230 Identities=10% Similarity=0.136 Sum_probs=194.0
Q ss_pred hhhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
.+.++++++++.+|..+.. ....|+|+||+|.|+....+.+ |+|+||+|+|||++|||||||+||||+++
T Consensus 436 GAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~V---lk~lsfti~pGe~vALVGPSGsGKSTias 512 (716)
T KOG0058|consen 436 GASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPV---LKNLSFTIRPGEVVALVGPSGSGKSTIAS 512 (716)
T ss_pred chHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchh---hcCceeeeCCCCEEEEECCCCCCHHHHHH
Confidence 4457899999988886544 2335999999999987755446 66699999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|.++|+ |++|+|.+||+|++ .+...-.+..+++|.|.|.+|..+|.+||.+|..
T Consensus 513 LL~rfY~-----PtsG~IllDG~~i~---------------~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~----- 567 (716)
T KOG0058|consen 513 LLLRFYD-----PTSGRILLDGVPIS---------------DINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD----- 567 (716)
T ss_pred HHHHhcC-----CCCCeEEECCeehh---------------hcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-----
Confidence 9999999 99999999999997 2333344455566666677777778888887764
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
...+++++.++++.+.++++..+|+||+|+|||+|. +||||||||+|||||| ||.||+||.
T Consensus 568 --~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~------qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeS 639 (716)
T KOG0058|consen 568 --NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS------QLSGGQKQRIAIARALLRNPRVLILDEATSALDAES 639 (716)
T ss_pred --CCCHHHHHHHHHHhChHHHHHhCccccccccCCccc------cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhh
Confidence 344678899999999999999999999999999966 9999999999999999 999999983
Q ss_pred -------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 270 -------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 270 -------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
++|||+|+|+ ...+.||+|+ ++++|+++|.|+++|++..+..-|
T Consensus 640 E~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Iv-vi~~G~V~E~G~h~eLl~~~~gly 697 (716)
T KOG0058|consen 640 EYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIV-VIDKGRVVEMGTHDELLSKPNGLY 697 (716)
T ss_pred HHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEE-EEcCCeEEecccHHHHhhCcccHH
Confidence 8999999994 3445599996 599999999999999998875444
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=344.89 Aligned_cols=213 Identities=17% Similarity=0.195 Sum_probs=181.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.|++++|+++|++.. + ++||||+|++||+++|+||||||||||+|+|.|+++ |++|+|+++|+++..
T Consensus 6 ~~~I~vr~v~~~fG~~~---I---ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-----P~~GeI~i~G~~i~~ 74 (263)
T COG1127 6 EPLIEVRGVTKSFGDRV---I---LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-----PDKGEILIDGEDIPQ 74 (263)
T ss_pred cceEEEeeeeeecCCEE---E---ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-----CCCCeEEEcCcchhc
Confidence 56799999999998754 3 777999999999999999999999999999999999 999999999999874
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.+..+.+.+ |+++|++||.-.+|..+ +|++|+.++++.+...+++..++.+...|+.+||.+..
T Consensus 75 ls~~~~~~i-r~r~GvlFQ~gALFssl----------tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~----- 138 (263)
T COG1127 75 LSEEELYEI-RKRMGVLFQQGALFSSL----------TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA----- 138 (263)
T ss_pred cCHHHHHHH-HhheeEEeecccccccc----------chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh-----
Confidence 443333322 33456666655544333 67777778777777788899999999999999999843
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
.+.+|++|||||++|++||||| ||||+|||+ |.|+++||| +
T Consensus 139 -----------~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 139 -----------ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred -----------hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 6899999999999999999999 999999997 999999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+..+|||+++ +.+|+|+..|+++++.+. .++++++|+.
T Consensus 208 s~~~i~Drv~~-L~~gkv~~~Gt~~el~~s-d~P~v~qf~~ 246 (263)
T COG1127 208 SLLTIADRVAV-LADGKVIAEGTPEELLAS-DDPWVRQFFN 246 (263)
T ss_pred HHHhhhceEEE-EeCCEEEEeCCHHHHHhC-CCHHHHHHhc
Confidence 78999999975 999999999999999875 6678787775
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=364.73 Aligned_cols=209 Identities=16% Similarity=0.197 Sum_probs=178.9
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||+|+|++.. + |++|||+|++||+++|+||||||||||||+|+||++ |++|+|+|+|++++
T Consensus 2 ~~i~l~~v~K~yg~~~---~---l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-----~~~G~I~i~g~~vt-- 68 (338)
T COG3839 2 AELELKNVRKSFGSFE---V---LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-----PTSGEILIDGRDVT-- 68 (338)
T ss_pred cEEEEeeeEEEcCCce---e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECC--
Confidence 3699999999998753 3 777999999999999999999999999999999999 99999999999997
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
......|.+ ++||||..++|. +|++|++|++... ..++++.++++.++++.++|.+
T Consensus 69 ----~l~P~~R~i-----------amVFQ~yALyPhmtV~~Niaf~Lk~~-~~~k~ei~~rV~eva~~L~l~~------- 125 (338)
T COG3839 69 ----DLPPEKRGI-----------AMVFQNYALYPHMTVYENIAFGLKLR-GVPKAEIDKRVKEVAKLLGLEH------- 125 (338)
T ss_pred ----CCChhHCCE-----------EEEeCCccccCCCcHHHHhhhhhhhC-CCchHHHHHHHHHHHHHcCChh-------
Confidence 212223344 445555555665 7777777777643 3356788999999999999999
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+++++|.+||||||||||||||| |||+|+||. +.|+|+||| .
T Consensus 126 ----------lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~ 195 (338)
T COG3839 126 ----------LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195 (338)
T ss_pred ----------HHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH
Confidence 78999999999999999999999 999999984 899999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 324 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 324 (346)
++..++|||+| |++|+|.+.|+|.+++.+|.+..+..|+....+
T Consensus 196 EAmtladri~V-m~~G~i~Q~g~p~ely~~P~n~fVA~FiG~p~m 239 (338)
T COG3839 196 EAMTLADRIVV-MNDGRIQQVGTPLELYERPANLFVAGFIGSPPM 239 (338)
T ss_pred HHHhhCCEEEE-EeCCeeeecCChHHHhhCccchhhhhhcCChhh
Confidence 78899999975 999999999999999999999999988886544
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=340.43 Aligned_cols=211 Identities=17% Similarity=0.201 Sum_probs=164.3
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.++++++|++.|+. ..+ |+||||+|.+||+++||||||||||||+|+|+|+.+ |++|+|.++|+.+.
T Consensus 2 ~~l~i~~v~~~f~~---~~v---l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-----p~~G~V~~~g~~v~-- 68 (248)
T COG1116 2 ALLEIEGVSKSFGG---VEV---LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-----PTSGEVLLDGRPVT-- 68 (248)
T ss_pred ceEEEEeeEEEeCc---eEE---eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCcccC--
Confidence 36899999999987 335 666999999999999999999999999999999999 99999999998864
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. +...++|+ ||+..+++. +|.+|+.+++.... .+..+.++++.++|+.+||.+
T Consensus 69 ----~---p~~~~~~v-----------FQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~------- 122 (248)
T COG1116 69 ----G---PGPDIGYV-----------FQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAG------- 122 (248)
T ss_pred ----C---CCCCEEEE-----------eccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcc-------
Confidence 1 11123444 555555665 88899988877543 345667779999999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+.++||++|||||||||+||||| |||+++||. ++|+++||| +
T Consensus 123 ----------~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~ 192 (248)
T COG1116 123 ----------FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD 192 (248)
T ss_pred ----------hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 67999999999999999999999 999999984 899999999 6
Q ss_pred hhhccccEEEEEecC--CeEeecCCccccccCCCCCChHHHHHHHHHHHHHHHh
Q 019066 280 DLLSLTDRARIRTYL--GELLGIPPAKQIFDIPESSDPENELIIVDMLRYCLEH 331 (346)
Q Consensus 280 ~~~~~aDri~v~l~~--G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 331 (346)
++..++|||+| |.+ |+|.+.-+.. +..|.......+......+...|..
T Consensus 193 EAv~LsdRivv-l~~~P~~i~~~~~i~--l~rpR~~~~~~f~~l~~~i~~~L~~ 243 (248)
T COG1116 193 EAVYLADRVVV-LSNRPGRIGEELEID--LPRPRIRGDPEFLELREELLEELRE 243 (248)
T ss_pred HHHhhhCEEEE-ecCCCcceeeEEecC--CCCCccccChHHHHHHHHHHHHHhh
Confidence 89999999964 988 4443332221 2233323334555555666555544
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-48 Score=399.94 Aligned_cols=224 Identities=12% Similarity=0.130 Sum_probs=184.6
Q ss_pred hhhHHHHHHhhhhhhhhccC--------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTRI--------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
...+|+.++++.++|..... ...|+++||+|+|+...+ .+ |+|+||+|++||++||||+||||||||+
T Consensus 441 ~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~-~v---L~~isL~I~~Ge~vaIvG~SGsGKSTL~ 516 (709)
T COG2274 441 VALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDP-PV---LEDLSLEIPPGEKVAIVGRSGSGKSTLL 516 (709)
T ss_pred HHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCc-ch---hhceeEEeCCCCEEEEECCCCCCHHHHH
Confidence 33578899999888843321 224999999999987644 24 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
|+|.|+|. |++|+|++||.|+. .+.....|...++|.|+..++..++++|+.++..
T Consensus 517 KLL~gly~-----p~~G~I~~dg~dl~---------------~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p---- 572 (709)
T COG2274 517 KLLLGLYK-----PQQGRILLDGVDLN---------------DIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP---- 572 (709)
T ss_pred HHHhcCCC-----CCCceEEECCEeHH---------------hcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC----
Confidence 99999999 99999999999987 1233334444444555555555566666665432
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
....+++.++++..|++++++.+|.||+|+|+|.|. .||||||||++||||| |||||+||+
T Consensus 573 ---~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~------~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~ 643 (709)
T COG2274 573 ---EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGA------NLSGGQRQRLALARALLSKPKILLLDEATSALDPE 643 (709)
T ss_pred ---CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCC------CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHh
Confidence 233578889999999999999999999999999954 9999999999999999 999999995
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+||| ....+.||||+| |++|+|+++|++++++..
T Consensus 644 sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiV-l~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 644 TEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIV-LDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEE-ccCCceeccCCHHHHHHh
Confidence 899999999 567777999964 999999999999999876
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=347.32 Aligned_cols=230 Identities=18% Similarity=0.224 Sum_probs=186.2
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+.+|.... .+++++| |||+|++||++||||+|||||||+.++|+|+++.......+|+|.|+|+++...
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~---vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDG---VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred CceEeeeEEEEecCCccEEEEec---eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 379999999996532 3567555 999999999999999999999999999999997322224789999999997644
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC-ChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+..+...++++.++++||+++... |+ ..+|.+.+......+... .+++.++++.++|+.+|+++..
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sL-----nP---v~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~----- 144 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSL-----NP---VMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE----- 144 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhc-----CC---hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH-----
Confidence 443333567778888888876431 11 125555565555544433 3567788999999999998631
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..+++||++|||||||||.||.|| ||||++||- |.|+|+||| .
T Consensus 145 ---------~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~ 215 (316)
T COG0444 145 ---------RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG 215 (316)
T ss_pred ---------HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 157999999999999999999999 999999983 999999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 325 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~ 325 (346)
.+.++||||+| |+.|+|||.|+.+++|.+|.|+||+.++.++..+
T Consensus 216 vva~~aDri~V-MYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 216 VVAEIADRVAV-MYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred HHHHhcceEEE-EECcEEEEeCCHHHHhcCCCChHHHHHHHhCccc
Confidence 68999999986 9999999999999999999999999999987665
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=342.25 Aligned_cols=211 Identities=18% Similarity=0.243 Sum_probs=177.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce---eCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~---~i~ 146 (346)
+|+++|+++.|+... + ++||||+|+.||.+||+||||||||||||+|+|++. |++|.|.++|+ |..
T Consensus 2 ~i~i~~~~~~~~~~~---a---~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-----p~~G~I~~~~~~l~D~~ 70 (345)
T COG1118 2 SIRINNVKKRFGAFG---A---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-----PDAGRIRLNGRVLFDVS 70 (345)
T ss_pred ceeehhhhhhccccc---c---cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-----CCCceEEECCEeccchh
Confidence 489999999998743 5 566999999999999999999999999999999999 99999999999 543
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhcc-CCChHHHHHHHHHHHHHcCCCccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
......+++||+||+.. +|+. +|.+||+||+...+ ..++...+.++.++|+.+.|++
T Consensus 71 ------~~~~~~R~VGfvFQ~YA-----------LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~---- 129 (345)
T COG1118 71 ------NLAVRDRKVGFVFQHYA-----------LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG---- 129 (345)
T ss_pred ------ccchhhcceeEEEechh-----------hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc----
Confidence 22233445566666554 4444 77777788875442 2345678899999999999999
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
+.++||.+||||||||||+|||| |||+++||. |.|+++|||
T Consensus 130 -------------la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTH 196 (345)
T COG1118 130 -------------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196 (345)
T ss_pred -------------hhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeC
Confidence 78999999999999999999999 999999984 999999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHHH
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLR 326 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 326 (346)
+++.++||||+ +|++|+|...|++++++.+|..+.+..++...+.+.
T Consensus 197 D~eea~~ladrvv-vl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G~~n~~~ 245 (345)
T COG1118 197 DQEEALELADRVV-VLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNVLP 245 (345)
T ss_pred CHHHHHhhcceEE-EecCCeeeeeCCHHHHhcCCCccceecccccceecc
Confidence 58999999996 599999999999999999999988877776554443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-45 Score=328.49 Aligned_cols=192 Identities=19% Similarity=0.248 Sum_probs=154.3
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+++++||++.|..+. .+++ |++|||+|++||+++|+|||||||||||++|.|+.+ |++|.|.++|+++...
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~---L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-----pt~G~v~i~g~d~~~l 72 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEA---LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-----PTSGEVLINGKDLTKL 72 (226)
T ss_pred CcEEeeeEEEeccCCcceEe---cccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCceEEECCEEcCcC
Confidence 478999999996543 2456 555999999999999999999999999999999999 9999999999998754
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
...+...++++.+||+||+..+...+ +.||+.+ +...... +....++++.++++.+||.+..
T Consensus 73 ~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l-----------pl~~~~~-~~~~~~~~~~~l~~~lgl~~~~----- 135 (226)
T COG1136 73 SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL-----------PLLIAGK-SAGRRKRAAEELLEVLGLEDRL----- 135 (226)
T ss_pred CHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh-----------HHHHcCC-ChhHHHHHHHHHHHhcCChhhh-----
Confidence 44444456677788888887776655 5555544 3322221 1225678889999999998732
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~~ 280 (346)
.+++|.+||||||||||||||| ||||.+||. |+|+||||| ..
T Consensus 136 -----------~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~ 204 (226)
T COG1136 136 -----------LKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE 204 (226)
T ss_pred -----------ccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 3488999999999999999999 999999984 889999999 57
Q ss_pred hhccccEEEEEecCCeEe
Q 019066 281 LLSLTDRARIRTYLGELL 298 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv 298 (346)
++..|||++ .|++|++.
T Consensus 205 lA~~~dr~i-~l~dG~~~ 221 (226)
T COG1136 205 LAKYADRVI-ELKDGKIE 221 (226)
T ss_pred HHHhCCEEE-EEeCCeee
Confidence 888999996 59999943
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=336.99 Aligned_cols=220 Identities=18% Similarity=0.201 Sum_probs=186.1
Q ss_pred CcEEEeeeEEEeCCCCce------------------ecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCC
Q 019066 69 SLTDAKNKILSYTPGAWI------------------ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 130 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~------------------~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~ 130 (346)
..|+++||++-|+..... -.+-+++|+||+|++||++.|+|-||||||||+|+|+++++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--- 79 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--- 79 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence 358999999999743100 01223566999999999999999999999999999999999
Q ss_pred CCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHH
Q 019066 131 FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRM 209 (346)
Q Consensus 131 ~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~ 209 (346)
|++|+|+++|.|+...+..+-..++++. ..||||+..++|. +|.+|+.||+... ..++.+.++++
T Consensus 80 --pt~G~ilv~g~di~~~~~~~Lr~~Rr~~-----------~sMVFQ~FaLlPhrtVl~Nv~fGLev~-Gv~~~er~~~a 145 (386)
T COG4175 80 --PTRGEILVDGKDIAKLSAAELRELRRKK-----------ISMVFQSFALLPHRTVLENVAFGLEVQ-GVPKAEREERA 145 (386)
T ss_pred --CCCceEEECCcchhcCCHHHHHHHHhhh-----------hhhhhhhhccccchhHhhhhhcceeec-CCCHHHHHHHH
Confidence 9999999999998743333333333333 4556677777776 8999999998754 45678889999
Q ss_pred HHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------
Q 019066 210 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------- 269 (346)
Q Consensus 210 ~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------- 269 (346)
.++|+.+||.. +.++||++|||||||||.||||| |||+|+||+
T Consensus 146 ~~~l~~VgL~~-----------------~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl 208 (386)
T COG4175 146 LEALELVGLEG-----------------YADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELL 208 (386)
T ss_pred HHHHHHcCchh-----------------hhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHH
Confidence 99999999999 67999999999999999999999 999999996
Q ss_pred ------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 270 ------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 270 ------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
++||++||| +++.++.|||++ |++|+|++.|+|+|++.+|.+.|+..|+.-.+
T Consensus 209 ~Lq~~l~KTIvFitHDLdEAlriG~rIai-mkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~ 269 (386)
T COG4175 209 ELQAKLKKTIVFITHDLDEALRIGDRIAI-MKDGEIVQVGTPEEILLNPANDYVRDFVRNVD 269 (386)
T ss_pred HHHHHhCCeEEEEecCHHHHHhccceEEE-ecCCeEEEeCCHHHHHcCccHHHHHHHHhcCC
Confidence 899999999 789999999986 99999999999999999999999999998543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=332.22 Aligned_cols=199 Identities=13% Similarity=0.123 Sum_probs=163.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |.+|+|.++|+++....
T Consensus 2 ~L~~~~ls~~y~~~~---i---l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-----p~~G~V~l~g~~i~~~~ 70 (258)
T COG1120 2 MLEVENLSFGYGGKP---I---LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-----PKSGEVLLDGKDIASLS 70 (258)
T ss_pred eeEEEEEEEEECCee---E---EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCCchhhcC
Confidence 589999999998643 3 777999999999999999999999999999999999 99999999999986211
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
..-..+.++|++|......++ |++-+.+... +...+.....+++++.+.++|+.+++.+
T Consensus 71 ----~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~--------p~~~~~~~~~~~D~~~v~~aL~~~~~~~-------- 130 (258)
T COG1120 71 ----PKELAKKLAYVPQSPSAPFGLTVYELVLLGRY--------PHLGLFGRPSKEDEEIVEEALELLGLEH-------- 130 (258)
T ss_pred ----HHHHhhhEEEeccCCCCCCCcEEeehHhhcCC--------cccccccCCCHhHHHHHHHHHHHhCcHH--------
Confidence 111244678888887655555 6665554321 1111112234566678999999999998
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
+.+++..+|||||||||.||||| ||||++||- |+|+|+|+| +.
T Consensus 131 ---------la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~ 201 (258)
T COG1120 131 ---------LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL 201 (258)
T ss_pred ---------HhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 67999999999999999999999 999999983 899999999 68
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.++||+++ +|++|+++..|+|++++..
T Consensus 202 A~ryad~~i-~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 202 AARYADHLI-LLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHhCCEEE-EEECCeEEeecCcchhcCH
Confidence 999999996 4999999999999988764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=360.34 Aligned_cols=221 Identities=16% Similarity=0.213 Sum_probs=180.6
Q ss_pred CCCcEEEeeeEEEeCCC--------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE
Q 019066 67 IGSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 138 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~--------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I 138 (346)
..++++++||++.|... ..+++ ++||||+|.+||++||||+||||||||.|+|+|+++ |++|.|
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~A---v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-----P~~G~i 348 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKA---VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-----PSSGSI 348 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceee---eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceE
Confidence 47789999999999741 22456 555999999999999999999999999999999999 999999
Q ss_pred EECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcC
Q 019066 139 TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 217 (346)
Q Consensus 139 ~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (346)
.++|.++. .. .....-.++.+.++|||+... +.+. +|.+.+..++..+......+.++++.++++.++
T Consensus 349 ~~~g~~~~-~~-~~~~~~~r~~~QmvFQdp~~S---------LnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~Vg 417 (539)
T COG1123 349 IFDGQDLD-LT-GGELRRLRRRIQMVFQDPYSS---------LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417 (539)
T ss_pred EEeCcccc-cc-cchhhhhhhheEEEEeCcccc---------cCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcC
Confidence 99998832 11 111111233445555554321 3333 788888887765554445666788999999999
Q ss_pred CCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------Cc
Q 019066 218 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 271 (346)
Q Consensus 218 l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~ 271 (346)
|.+. ++++||++||||||||++||||| |||||+||. |.
T Consensus 418 L~~~----------------~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~ 481 (539)
T COG1123 418 LPPE----------------FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481 (539)
T ss_pred CCHH----------------HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence 9964 47999999999999999999999 999999995 99
Q ss_pred eEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 272 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 272 tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
|+|+||| +.+..+||||+| |++|+||+.|+.+++|..|.++|++.++.+..
T Consensus 482 t~lfISHDl~vV~~i~drv~v-m~~G~iVE~G~~~~v~~~p~h~Ytr~L~~avp 534 (539)
T COG1123 482 TYLFISHDLAVVRYIADRVAV-MYDGRIVEEGPTEKVFENPQHPYTRKLLAAVP 534 (539)
T ss_pred EEEEEeCCHHHHHhhCceEEE-EECCeEEEeCCHHHHhcCCCChHHHHHHHhcc
Confidence 9999999 578999999975 99999999999999999999999999988654
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=377.15 Aligned_cols=222 Identities=12% Similarity=0.152 Sum_probs=180.3
Q ss_pred hhhHHHHHHhhhhhhhhccC------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
...+++.++++.+++..+.. ...|+++||+|+|+++..+ |+|+||+|++||++|||||||||||||+++
T Consensus 300 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~~~~v-----l~~is~~i~~Ge~vaiVG~sGsGKSTl~~L 374 (567)
T COG1132 300 AAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGKKPV-----LKDISFSIEPGEKVAIVGPSGSGKSTLIKL 374 (567)
T ss_pred HHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCCCCcc-----ccCceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 44577889998766544432 1349999999999864443 777999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|+|+|+ |++|+|++||+|++ . +...+.+...++|+|++.+|..++.+||.++..
T Consensus 375 L~r~~~-----~~~G~I~idg~dI~------~---------i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~------ 428 (567)
T COG1132 375 LLRLYD-----PTSGEILIDGIDIR------D---------ISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP------ 428 (567)
T ss_pred HhccCC-----CCCCeEEECCEehh------h---------cCHHHHHHhccEEcccceeecccHHHHHhcCCC------
Confidence 999999 99999999999997 2 222233333444445555555566666665532
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
...++++.++++.+++++++..+|+||+|+|||+|. .||||||||++||||| |||||+||.
T Consensus 429 -~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~------~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE 501 (567)
T COG1132 429 -DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGV------NLSGGQRQRLAIARALLRNPPILILDEATSALDTETE 501 (567)
T ss_pred -CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCc------cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhH
Confidence 234578999999999999999999999999999965 9999999999999999 999999984
Q ss_pred ------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+|+| ..+.. ||+|+ +|++|++++.|+|++++.+
T Consensus 502 ~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~Ii-Vl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 502 ALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRII-VLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEE-EEECCEEEEecCHHHHHHc
Confidence 679999999 34555 99996 4999999999999999887
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=311.03 Aligned_cols=221 Identities=16% Similarity=0.135 Sum_probs=185.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.|+++|+.++|+.... |++|||+.++|+++.|||.|||||||++|||+-+.. |++|.|.++|+.+..
T Consensus 4 ~~~l~v~dlHK~~G~~eV------LKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-----P~~G~I~v~geei~~ 72 (256)
T COG4598 4 ENALEVEDLHKRYGEHEV------LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSAGSIRVNGEEIRL 72 (256)
T ss_pred ccceehhHHHhhcccchh------hcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-----CCCceEEECCeEEEe
Confidence 456999999999988653 677999999999999999999999999999999999 999999999998751
Q ss_pred cccc--cccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFL--QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~--~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
-... +.....+ ...+..|..-++|||+.+++.. ++.+|+...+..--..++.+..++++.+|.++|+.+
T Consensus 73 k~~~~G~l~~ad~----~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~e---- 144 (256)
T COG4598 73 KRDKDGQLKPADK----RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE---- 144 (256)
T ss_pred eeCCCCCeeeCCH----HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchh----
Confidence 0000 0000001 1133345556889999999987 999999987654334567788899999999999998
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
..+.||..|||||+||++||||| |||||+||+ |+|+++|||
T Consensus 145 -------------k~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHE 211 (256)
T COG4598 145 -------------KADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211 (256)
T ss_pred -------------hhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 46899999999999999999999 999999996 999999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
.++.+.+.+++ +|++|.|-++|+|+++|.+|..+..+.|+.+
T Consensus 212 M~FAR~Vss~v~-fLh~G~iEE~G~P~qvf~nP~S~RlkqFlss 254 (256)
T COG4598 212 MGFARDVSSHVI-FLHQGKIEEEGPPEQVFGNPQSPRLKQFLSS 254 (256)
T ss_pred hhHHHhhhhheE-EeecceecccCChHHHhcCCCCHHHHHHHHh
Confidence 67889999995 6999999999999999999999988888764
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=322.35 Aligned_cols=202 Identities=15% Similarity=0.148 Sum_probs=159.7
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||++.|+++.. + |+||||+|++||+++||||||||||||||+|+|+.+ |++|+|.++|.++...
T Consensus 2 ~~i~~~nl~k~yp~~~~--a---L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-----~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQ--A---LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-----PTSGEILFNGVQITKL 71 (258)
T ss_pred ceEEEeeeeeecCCCce--e---eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-----CCcceEEecccchhcc
Confidence 47999999999976554 5 777999999999999999999999999999999999 9999999999987622
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHH---HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKL---WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~---~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
...+ ..-.|+++|++||.+.+...+ |.+|+..... +.+.. .-....++.+.++.++|+++|+.+
T Consensus 72 ~~k~-lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~s-------lfglfsk~dk~~Al~aLervgi~~---- 139 (258)
T COG3638 72 KGKE-LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRS-------LFGLFSKEDKAQALDALERVGILD---- 139 (258)
T ss_pred chHH-HHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHH-------HhCCCCHHHHHHHHHHHHHcCcHH----
Confidence 2111 111244566666666555444 5555433221 00000 012234677888999999999998
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
.+.++..+|||||+|||+||||| |||+++||+ |.|+|+.-|
T Consensus 140 -------------~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH 206 (258)
T COG3638 140 -------------KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLH 206 (258)
T ss_pred -------------HHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEec
Confidence 56788999999999999999999 999999996 999999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+.+.++||||+ -|++|+|+.+|+++++
T Consensus 207 ~vdlA~~Y~~Rii-gl~~G~ivfDg~~~el 235 (258)
T COG3638 207 QVDLAKKYADRII-GLKAGRIVFDGPASEL 235 (258)
T ss_pred hHHHHHHHHhhhe-EecCCcEEEeCChhhh
Confidence 78999999996 5999999999999764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=384.35 Aligned_cols=245 Identities=16% Similarity=0.217 Sum_probs=200.5
Q ss_pred cccCCCCCCCCcccchhhh-hhhhHHHHHHhhhhhhhhcc---------CCCcEEEeeeEEEeCCCCceecccCceeeeE
Q 019066 28 LLSGDDEGSRDSWDSLVDQ-RRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDY 97 (346)
Q Consensus 28 ~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl 97 (346)
+..+...+-..|-+..... +.+...++++.+..|..... ....|+++||+|+|+.+..+.+ |+++||
T Consensus 298 l~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~I---l~g~sl 374 (1228)
T KOG0055|consen 298 LIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKI---LKGVSL 374 (1228)
T ss_pred hhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchh---hCCeEE
Confidence 3344444444443333332 33455678888777665332 1235999999999988765556 555999
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhh
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 177 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~q 177 (346)
+|++|+++||||||||||||++++|.|+|+ |++|+|++||.|++ .+.....|..+++|.|
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~Rfyd-----P~~G~V~idG~di~---------------~~~~~~lr~~iglV~Q 434 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYD-----PTSGEVLIDGEDIR---------------NLNLKWLRSQIGLVSQ 434 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCCceEEEcCccch---------------hcchHHHHhhcCeeee
Confidence 999999999999999999999999999999 99999999999987 2444455667777888
Q ss_pred chHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHH
Q 019066 178 NINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA 257 (346)
Q Consensus 178 n~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IA 257 (346)
.|.+|..++.+||.++.. ...++++.++++..+..+++..+|+||+|.|||+|. +||||||||+|||
T Consensus 435 ePvlF~~tI~eNI~~G~~-------dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~------qLSGGQKQRIAIA 501 (1228)
T KOG0055|consen 435 EPVLFATTIRENIRYGKP-------DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV------QLSGGQKQRIAIA 501 (1228)
T ss_pred chhhhcccHHHHHhcCCC-------cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC------CCChHHHHHHHHH
Confidence 888888899999988653 456788999999999999999999999999999976 7999999999999
Q ss_pred Hhc---------CccccCCCC---------------CceEEEEech--hhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 258 TTF---------NCPYLSFRD---------------DKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 258 rAL---------DEPts~Ld~---------------g~tviiiTH~--~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
||| |||||+||. |+|.|+|+|+ .+.. ||+|++ |++|+|+|.|+|+|++..+
T Consensus 502 Ralv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v-~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 502 RALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAV-MEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred HHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEE-EECCEEEEecCHHHHHhcc
Confidence 999 999999994 9999999993 4555 999975 9999999999999999876
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=310.44 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=161.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+|+||++.|+++.. | |+||||+|++||++-|+||||||||||+|+|++..+ |++|+|+++|+|+...
T Consensus 1 mI~f~~V~k~Y~~g~~--a---L~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-----pt~G~i~~~~~dl~~l- 69 (223)
T COG2884 1 MIRFENVSKAYPGGRE--A---LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-----PTRGKILVNGHDLSRL- 69 (223)
T ss_pred CeeehhhhhhcCCCch--h---hhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-----CCCceEEECCeecccc-
Confidence 6899999999988743 6 566999999999999999999999999999999999 9999999999998622
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
...+..+-|+++|++|||.++.... +|++|+++++...+ .++.+.++++.++|+.+||.+
T Consensus 70 ~~~~iP~LRR~IGvVFQD~rLL~~~----------tvyeNVA~pL~v~G-~~~~~i~~rV~~~L~~VgL~~--------- 129 (223)
T COG2884 70 KGREIPFLRRQIGVVFQDFRLLPDR----------TVYENVALPLRVIG-KPPREIRRRVSEVLDLVGLKH--------- 129 (223)
T ss_pred cccccchhhheeeeEeeeccccccc----------hHhhhhhhhhhccC-CCHHHHHHHHHHHHHHhccch---------
Confidence 1223334477888888887765433 55666666665443 346788999999999999998
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..+..|.+|||||||||+||||+ ||||.+||+ |+||+|.|| ..+.
T Consensus 130 --------k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 130 --------KARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVN 201 (223)
T ss_pred --------hhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHH
Confidence 45888999999999999999999 999999996 999999999 4677
Q ss_pred ccccEEEEEecCCeEeecCCc
Q 019066 283 SLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~ 303 (346)
+.--|++ .+++|+++.+...
T Consensus 202 ~~~~rvl-~l~~Grl~~d~~~ 221 (223)
T COG2884 202 RMRHRVL-ALEDGRLVRDESR 221 (223)
T ss_pred hccCcEE-EEeCCEEEecccc
Confidence 7778885 5999999977543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=337.22 Aligned_cols=249 Identities=14% Similarity=0.206 Sum_probs=201.2
Q ss_pred ccccccccccccccccCCCCCCCCcccchhhhhhhhHHHHHHhhhhhhhhccCCCcEEEeeeEEEeCCCC--------ce
Q 019066 15 EEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGA--------WI 86 (346)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~--------~~ 86 (346)
..+..|.++|+..++.+.+.+++.|. ++.+.++++.++|.+.|+-+. .+
T Consensus 244 ~lF~~PqHpYTr~Ll~aeP~g~~~p~-----------------------~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~ 300 (534)
T COG4172 244 TLFAAPQHPYTRKLLAAEPSGDPPPL-----------------------PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHL 300 (534)
T ss_pred HHhhCCCChHHHHHHhcCCCCCCCCC-----------------------CCCCCceEEecceEEEEecCCccccccchhe
Confidence 34567778887777777777666654 112366899999999995321 13
Q ss_pred ecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceee
Q 019066 87 ENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY 166 (346)
Q Consensus 87 ~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~ 166 (346)
.|+++ |||++++||+++|||+||||||||-.+|.++++ ++ |+|.|+|+++...+..+. .--|+.+..+||
T Consensus 301 ~AVd~---isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-----s~-G~I~F~G~~i~~~~~~~m-rplR~~mQvVFQ 370 (534)
T COG4172 301 RAVDG---ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-----SQ-GEIRFDGQDIDGLSRKEM-RPLRRRMQVVFQ 370 (534)
T ss_pred EEecc---ceeEecCCCeEEEEecCCCCcchHHHHHHhhcC-----cC-ceEEECCccccccChhhh-hhhhhhceEEEe
Confidence 57555 999999999999999999999999999999997 55 999999999974333222 222557788888
Q ss_pred cccccccchhhchHhhHH-HHHhhhhcchhhcc-CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCC
Q 019066 167 DTRSLSDDASDNINMIKL-WIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 244 (346)
Q Consensus 167 d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~ 244 (346)
|+.+. +.+. +|.+-|..|+..+. ..+..+.++++.++|+.+||++.. +++||+
T Consensus 371 DPygS---------LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~----------------r~RYPh 425 (534)
T COG4172 371 DPYGS---------LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT----------------RNRYPH 425 (534)
T ss_pred CCCCC---------CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH----------------hhcCCc
Confidence 87643 2333 66667777777665 455678889999999999999854 699999
Q ss_pred CCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech--hhhccccEEEEEecCCe
Q 019066 245 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG--DLLSLTDRARIRTYLGE 296 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~--~~~~~aDri~v~l~~G~ 296 (346)
++|||||||+|||||+ |||||+||. |.+.++|||| .+..+||+++| |++|+
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viV-m~~Gk 504 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIV-MRDGK 504 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEE-EeCCE
Confidence 9999999999999998 999999984 8999999994 57889999965 99999
Q ss_pred EeecCCccccccCCCCCChHHHHHHH
Q 019066 297 LLGIPPAKQIFDIPESSDPENELIIV 322 (346)
Q Consensus 297 iv~~g~~~~l~~~~~~~~~~~~~~~~ 322 (346)
|||.|+.+++|.+|.++||+.++.+.
T Consensus 505 iVE~G~~~~if~~P~~~YT~~L~~aa 530 (534)
T COG4172 505 IVEQGPTEAVFANPQHEYTRALLAAA 530 (534)
T ss_pred EeeeCCHHHHhcCCCcHHHHHHHHhh
Confidence 99999999999999999999998754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=342.03 Aligned_cols=214 Identities=14% Similarity=0.159 Sum_probs=169.9
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
||+++||+++|+.+. ...+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++...
T Consensus 1 mI~~~~lsk~y~~~~~~~~~---L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-----p~~G~I~i~G~~i~~~ 72 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTSGSVIVDGQDLTTL 72 (343)
T ss_pred CEEEEEEEEEECCCCcceEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcC
Confidence 589999999996421 1235 666999999999999999999999999999999999 9999999999998521
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. .......++.++|++|+...+... ++.+|+.++.... ..+..+.++++.++++.+||.+
T Consensus 73 ~-~~~l~~~r~~Ig~v~Q~~~l~~~~----------tv~eni~~~~~~~-~~~~~~~~~~v~e~l~~vgL~~-------- 132 (343)
T TIGR02314 73 S-NSELTKARRQIGMIFQHFNLLSSR----------TVFGNVALPLELD-NTPKDEIKRKVTELLALVGLGD-------- 132 (343)
T ss_pred C-HHHHHHHhcCEEEEECCccccccC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 1 111111245677777776554332 4444444433221 1234566778999999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
.+++++.+|||||||||+||||| ||||++||+ |.|||+||| +.
T Consensus 133 ---------~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~ 203 (343)
T TIGR02314 133 ---------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV 203 (343)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 56899999999999999999999 999999984 789999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+.++||++++ |++|++++.|++++++.+|.++.++.++..
T Consensus 204 v~~~~d~v~v-l~~G~iv~~g~~~~v~~~p~~~~~~~~~~~ 243 (343)
T TIGR02314 204 VKRICDCVAV-ISNGELIEQGTVSEIFSHPKTPLAQKFIRS 243 (343)
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHcCCCcHHHHHHHhh
Confidence 8899999975 999999999999999999888877777653
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=379.13 Aligned_cols=231 Identities=12% Similarity=0.121 Sum_probs=196.0
Q ss_pred hhhhhHHHHHHhhhhhhhhccC---------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHH
Q 019066 46 QRRRDAVFREVLQSYDQLRTRI---------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 116 (346)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKS 116 (346)
...+...++.+++.+|.+.... ..-|+++||+|+|+....+.+ |+|+||+|++|+++|||||||||||
T Consensus 954 a~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~I---l~~l~l~i~~GqTvALVG~SGsGKS 1030 (1228)
T KOG0055|consen 954 AKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPV---LNNLSLSIRAGQTVALVGPSGSGKS 1030 (1228)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchh---hcCCcEEecCCCEEEEECCCCCCHH
Confidence 3345567899998887543321 124999999999987665556 5559999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh
Q 019066 117 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 196 (346)
Q Consensus 117 TLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~ 196 (346)
|++.+|-++|+ |++|.|.+||+|++ .+.+...|...++|.|.|.||..++++||.+|..
T Consensus 1031 TvI~LLeRfYd-----p~~G~V~IDg~dik---------------~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~- 1089 (1228)
T KOG0055|consen 1031 TVISLLERFYD-----PDAGKVKIDGVDIK---------------DLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE- 1089 (1228)
T ss_pred HHHHHHHHhcC-----CCCCeEEECCcccc---------------cCCHHHHHHhcceeccCchhhcccHHHHHhccCC-
Confidence 99999999999 99999999999997 3455556666777888888888899999998822
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCC
Q 019066 197 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 267 (346)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 267 (346)
+..++++.++++..++++++..+|+||||.|||+|. +||||||||+|||||| ||.||+|
T Consensus 1090 ------~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~------QLSGGQKQRIAIARAilRnPkILLLDEATSAL 1157 (1228)
T KOG0055|consen 1090 ------EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV------QLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157 (1228)
T ss_pred ------CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC------cCCchHHHHHHHHHHHHcCCCeeeeeccchhh
Confidence 245678999999999999999999999999999966 9999999999999999 9999999
Q ss_pred CC---------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 268 RD---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 268 d~---------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
|. |+|.|+|+|+ ...+.||.|+| +++|+|+|.|+|++++. +.-.|
T Consensus 1158 DseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~V-i~~G~VvE~GtH~~L~~-~~G~Y 1218 (1228)
T KOG0055|consen 1158 DSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAV-LKNGKVVEQGTHDELLA-KRGIY 1218 (1228)
T ss_pred hhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEE-EECCEEEecccHHHHHh-CCCch
Confidence 83 9999999994 45566999975 99999999999999998 44444
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=371.40 Aligned_cols=221 Identities=14% Similarity=0.088 Sum_probs=173.7
Q ss_pred hhHHHHHHhhhhhhhhc-c----C---CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRT-R----I---GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~-~----~---~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
...|+.++++.+++... . . ..-|+++||+|.|.++.. + |+|+||+|++|+++||+||||||||||++
T Consensus 320 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~--v---L~~i~l~i~~G~~vaIvG~SGsGKSTL~~ 394 (588)
T PRK11174 320 AAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKT--L---AGPLNFTLPAGQRIALVGPSGAGKTSLLN 394 (588)
T ss_pred HHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCe--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 34667888765543211 1 1 124999999987754443 4 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ ++|+|.+||+++. + +...+.+..+++|+|++.+|..++++||.++..
T Consensus 395 lL~g~~p------~~G~I~i~g~~i~------~---------~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~----- 448 (588)
T PRK11174 395 ALLGFLP------YQGSLKINGIELR------E---------LDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP----- 448 (588)
T ss_pred HHhcCCC------CCcEEEECCEecc------c---------CCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC-----
Confidence 9999994 6899999999986 1 222333334444555555556666677765421
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
+..++++.++++.+++++++..+|+||+|.|||+|. .||||||||++||||| |||||+||.
T Consensus 449 --~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~------~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 449 --DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAA------GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred --CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 234578889999999999999999999999999954 8999999999999999 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| -.....||+|+ +|++|++++.|++++++..
T Consensus 521 e~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Ii-vl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 521 EQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW-VMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEE-EEeCCeEeecCCHHHHHhc
Confidence 799999999 34455699996 5999999999999999865
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=347.65 Aligned_cols=228 Identities=14% Similarity=0.158 Sum_probs=188.8
Q ss_pred hHHHHHHhhhhhhhhccC--------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 50 DAVFREVLQSYDQLRTRI--------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~--------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
.++.++++++++++.+.+ ...|+|+||+|.|..+.++ |+||||++.||+++|||||||+||||++|+
T Consensus 509 mEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~v-----l~disF~v~pGktvAlVG~SGaGKSTimRl 583 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPV-----LSDISFTVQPGKTVALVGPSGAGKSTIMRL 583 (790)
T ss_pred HHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCce-----eecceEEecCCcEEEEECCCCCchhHHHHH
Confidence 467899999999987653 2359999999999888775 888999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCccccccccc--CCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTI--PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~--~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
|.++++ .++|.|.+||+|++ .... -|+.+|.++||..+|. +++..||.++..
T Consensus 584 LfRffd-----v~sGsI~iDgqdIr------nvt~~SLRs~IGVVPQDtvLFN-----------dTI~yNIryak~---- 637 (790)
T KOG0056|consen 584 LFRFFD-----VNSGSITIDGQDIR------NVTQSSLRSSIGVVPQDTVLFN-----------DTILYNIRYAKP---- 637 (790)
T ss_pred HHHHhh-----ccCceEEEcCchHH------HHHHHHHHHhcCcccCcceeec-----------ceeeeheeecCC----
Confidence 999999 99999999999987 1111 1445666666665554 445555554432
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
....+++.++++..++++.+..+|+||.|.|||||+ .|||||||||||||++ ||.||+||.
T Consensus 638 ---~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL------kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~ 708 (790)
T KOG0056|consen 638 ---SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL------KLSGGEKQRVAIARTILKAPSIILLDEATSALDTN 708 (790)
T ss_pred ---CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc------ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCc
Confidence 344577889999999999999999999999999987 8999999999999998 999999983
Q ss_pred --------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 270 --------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 270 --------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
++|.|+|+|+ ...-.||.|++ +++|+|+|.|.|+|++.++.-.|..++
T Consensus 709 tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILv-i~~G~IvErG~HeeLl~rdgG~Ya~MW 771 (790)
T KOG0056|consen 709 TERAIQAALARLCANRTTIVVAHRLSTIVNADLILV-ISNGRIVERGRHEELLKRDGGAYADMW 771 (790)
T ss_pred cHHHHHHHHHHHhcCCceEEEeeeehheecccEEEE-EeCCeEeecCcHHHHHhccCCcHHHHH
Confidence 8999999993 33335999975 999999999999999988766665444
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-44 Score=349.79 Aligned_cols=198 Identities=16% Similarity=0.204 Sum_probs=169.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
..|+|+||+++|+++.. + |+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|++||++++
T Consensus 350 ~~I~F~dV~f~y~~k~~--i---L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------~sG~I~IdG~dik-- 416 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRK--V---LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------YSGSILIDGQDIK-- 416 (591)
T ss_pred CcEEEEeeEEEeCCCCc--e---ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------cCCcEEECCeeHh--
Confidence 35999999999988764 3 677999999999999999999999999999999997 7899999999997
Q ss_pred ccccccccC--CCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIP--RGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~--r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
+.... |+.++++|||.. +|..+|..||.+|.. ....+++.+++++.++++-+.++|
T Consensus 417 ----~~~~~SlR~~Ig~VPQd~~-----------LFndTIl~NI~YGn~-------sas~eeV~e~~k~a~~hd~i~~l~ 474 (591)
T KOG0057|consen 417 ----EVSLESLRQSIGVVPQDSV-----------LFNDTILYNIKYGNP-------SASDEEVVEACKRAGLHDVISRLP 474 (591)
T ss_pred ----hhChHHhhhheeEeCCccc-----------ccchhHHHHhhcCCC-------CcCHHHHHHHHHHcCcHHHHHhcc
Confidence 32222 445556555554 455566677776543 344578999999999999999999
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDL 281 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~ 281 (346)
+||+|.|||+|. .|||||||||+||||+ |||||+||. ++|+|+|.| -..
T Consensus 475 ~GY~T~VGerG~------~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~l 548 (591)
T KOG0057|consen 475 DGYQTLVGERGL------MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDL 548 (591)
T ss_pred ccchhhHhhccc------ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchh
Confidence 999999999977 8999999999999998 999999984 899999999 345
Q ss_pred hccccEEEEEecCCeEeecCCcccccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
...||+|+ ++++|++.+.|++++++.
T Consensus 549 l~~~DkI~-~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 549 LKDFDKII-VLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCEEE-EEECCeeEEeccHHHHhh
Confidence 55699996 599999999999999988
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-44 Score=374.82 Aligned_cols=222 Identities=13% Similarity=0.116 Sum_probs=174.7
Q ss_pred hhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
..+|+.++++.+++.... ....|+++||+|+|++... .+ |+|+||+|++||++||+|+||||||||+|+|
T Consensus 424 ~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~~~-~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL 499 (686)
T TIGR03797 424 LWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGP-LI---LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL 499 (686)
T ss_pred HHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCCCc-cc---eeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 345677777665443211 1235999999999964321 14 7779999999999999999999999999999
Q ss_pred hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCCh
Q 019066 123 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 202 (346)
Q Consensus 123 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~ 202 (346)
+|+++ |++|+|.+||+++. . +...+.+...++|+|++.++..++++|+.++..
T Consensus 500 ~gl~~-----p~~G~I~idg~~i~------~---------~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~------- 552 (686)
T TIGR03797 500 LGFET-----PESGSVFYDGQDLA------G---------LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP------- 552 (686)
T ss_pred hCCCC-----CCCCEEEECCEEcC------c---------CCHHHHHhccEEEccCCccCcccHHHHHhcCCC-------
Confidence 99999 99999999999986 1 222223333344444444555566666655321
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
..++++.++++.+++++++..+|+||+|.|||+|. .||||||||++||||| |||||+||.
T Consensus 553 -~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~------~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~ 625 (686)
T TIGR03797 553 -LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGG------TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625 (686)
T ss_pred -CCHHHHHHHHHHcCcHHHHHhccccccccccCCCC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 23467889999999999999999999999999954 8999999999999999 999999994
Q ss_pred ---------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ---------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ---------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ....+.||+|+ +|++|+|++.|+++++++.
T Consensus 626 ~i~~~L~~~~~T~IiItHr~~~i~~~D~Ii-vl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 626 IVSESLERLKVTRIVIAHRLSTIRNADRIY-VLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHHHhCCeEEEEecChHHHHcCCEEE-EEECCEEEEECCHHHHHhC
Confidence 789999999 34455699996 5999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=337.88 Aligned_cols=208 Identities=13% Similarity=0.166 Sum_probs=171.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+++|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~ 72 (351)
T PRK11432 4 KNFVVLKNITKRFGSNT---V---IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-----PTEGQIFIDGEDVTH 72 (351)
T ss_pred CcEEEEEeEEEEECCeE---E---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCC
Confidence 45799999999997532 4 677999999999999999999999999999999999 999999999998851
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
....++.+++++|+...|..+ ++.+|+.++.... ..+..+.++++.++++.+++.+
T Consensus 73 ------~~~~~r~ig~vfQ~~~lfp~~----------tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~~gl~~------- 128 (351)
T PRK11432 73 ------RSIQQRDICMVFQSYALFPHM----------SLGENVGYGLKML-GVPKEERKQRVKEALELVDLAG------- 128 (351)
T ss_pred ------CCHHHCCEEEEeCCcccCCCC----------CHHHHHHHHHhHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 122234567777766555443 4445555543321 2234566788999999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
++++++.+|||||||||+||||| |||+++||. |+|+|+||| +
T Consensus 129 ----------~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 129 ----------FEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 57999999999999999999999 999999984 799999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
++..+||||++ |++|+|++.|++++++.+|.+.++..++..
T Consensus 199 e~~~laD~i~v-m~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 239 (351)
T PRK11432 199 EAFAVSDTVIV-MNKGKIMQIGSPQELYRQPASRFMASFMGD 239 (351)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCchHHHHhcCC
Confidence 78899999975 999999999999999999998887777764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=348.52 Aligned_cols=229 Identities=16% Similarity=0.203 Sum_probs=188.4
Q ss_pred CCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||++.|... ..+++ ++||||+|.+||++||||+|||||||+.++|+|+++.+. ...+|+|.|+|+++.
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~---v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-~~~~G~I~~~g~dl~ 78 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPA---VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-RITSGEVILDGRDLL 78 (539)
T ss_pred CceEEEeceEEEEecCCcceee---eecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-cccceEEEECCcchh
Confidence 3479999999999543 23457 555999999999999999999999999999999998442 245899999999886
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhH-HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~-~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.....+...+.++.++++||+++.. +.+ .++.+.|......+......+.++++.++|+++||++..
T Consensus 79 ~l~~~~~r~~rg~~Ia~i~Q~p~~s---------lnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~--- 146 (539)
T COG1123 79 GLSEREMRKLRGKRIAMIFQDPMTS---------LNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPE--- 146 (539)
T ss_pred cCCHHHHHHhccccEEEEecCchhh---------cCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChh---
Confidence 5555555566777889999987653 122 255566666555555445778899999999999998743
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++||++|||||||||.||+|| ||||++||. |+++|+|||
T Consensus 147 ------------~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD 214 (539)
T COG1123 147 ------------RRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214 (539)
T ss_pred ------------hhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 22679999999999999999999 999999984 999999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 325 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~ 325 (346)
..+.++||||+ +|++|+++|.|++++++.+|.|+|++.++.+...+
T Consensus 215 l~Vva~~aDrv~-Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~ 261 (539)
T COG1123 215 LGVVAELADRVV-VMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRL 261 (539)
T ss_pred HHHHHHhcCeEE-EEECCEEEEecCHHHHHhccCCcccHHHHhhCCCc
Confidence 57899999996 49999999999999999999999999998875443
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=338.78 Aligned_cols=207 Identities=15% Similarity=0.173 Sum_probs=168.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~-- 70 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQ--V---IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-----ITSGEIWIGGRVVNE-- 70 (356)
T ss_pred EEEEEeEEEEeCCCCE--E---EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-----CCceEEEECCEECCC--
Confidence 6999999999942222 4 777999999999999999999999999999999999 999999999999851
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...|..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 71 ----~~~~~r~ig~v~Q~~~lfp~~----------tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~--------- 126 (356)
T PRK11650 71 ----LEPADRDIAMVFQNYALYPHM----------SVRENMAYGLKIR-GMPKAEIEERVAEAARILELEP--------- 126 (356)
T ss_pred ----CCHHHCCEEEEeCCccccCCC----------CHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 111234567777776555443 4445554443221 1234456678999999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
++++++.+|||||||||+||||| ||||++||. |.|+|+||| +++
T Consensus 127 --------~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea 198 (356)
T PRK11650 127 --------LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEA 198 (356)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 57999999999999999999999 999999984 799999999 578
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
..+||++++ |++|++++.|++++++.+|.+.++..++..
T Consensus 199 ~~l~D~i~v-l~~G~i~~~g~~~~~~~~p~~~~~~~~~g~ 237 (356)
T PRK11650 199 MTLADRVVV-MNGGVAEQIGTPVEVYEKPASTFVASFIGS 237 (356)
T ss_pred HHhCCEEEE-EeCCEEEEECCHHHHHhCCccHHHHHHcCC
Confidence 899999975 999999999999999999987777666653
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=301.77 Aligned_cols=195 Identities=17% Similarity=0.229 Sum_probs=159.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||.+++|.++|+.-.. .++++|+.||++||+||||||||||+|+|+|+.. |.+|+|+++|+|...
T Consensus 1 ~l~L~~V~~~y~~~~~--------~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-----P~~G~i~i~g~d~t~-- 65 (231)
T COG3840 1 MLALDDVRFSYGHLPM--------RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-----PASGEILINGVDHTA-- 65 (231)
T ss_pred CccccceEEeeCcceE--------EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-----CCCceEEEcCeecCc--
Confidence 4788999999976432 2899999999999999999999999999999999 999999999999862
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
..-..+-++++||+..+|..+ +|.+|+.+|....-. -..+.+++++.++.++||..
T Consensus 66 ----~~P~~RPVSmlFQEnNLFaHL----------tV~qNigLGl~P~Lk-L~a~~r~~v~~aa~~vGl~~--------- 121 (231)
T COG3840 66 ----SPPAERPVSMLFQENNLFAHL----------TVAQNIGLGLSPGLK-LNAEQREKVEAAAAQVGLAG--------- 121 (231)
T ss_pred ----CCcccCChhhhhhccccchhh----------hhhhhhcccCCcccc-cCHHHHHHHHHHHHHhChhh---------
Confidence 111233445666665555433 555565555431111 13567889999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
++++.|.+||||||||||+||+| |||+|+||+ +.|++|||| +++
T Consensus 122 --------~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da 193 (231)
T COG3840 122 --------FLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA 193 (231)
T ss_pred --------HhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 67999999999999999999999 999999986 899999999 789
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPES 312 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 312 (346)
.+++||++ ++++|+|...|+.++++.....
T Consensus 194 ~~ia~~~~-fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 194 ARIADRVV-FLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred HHhhhceE-EEeCCEEEeeccHHHHhccCCh
Confidence 99999995 6999999999999999876543
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=337.06 Aligned_cols=208 Identities=13% Similarity=0.148 Sum_probs=170.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~ 70 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFT---A---LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-----QTAGTIYQGGRDITR 70 (353)
T ss_pred CcEEEEEEEEEEeCCeE---E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCC
Confidence 34799999999997632 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
....++.++|++|+...|..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 71 ------~~~~~r~ig~v~Q~~~lfp~~----------tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~------- 126 (353)
T TIGR03265 71 ------LPPQKRDYGIVFQSYALFPNL----------TVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPG------- 126 (353)
T ss_pred ------CCHHHCCEEEEeCCcccCCCC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCc-------
Confidence 111234567777776665544 4444444443211 1234566788999999999988
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
++++++.+|||||||||+||||| |||+++||. +.|+|+||| +
T Consensus 127 ----------~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 127 ----------SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 57999999999999999999999 999999983 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
++..+|||+++ |++|++++.|++++++.+|.+.++..++..
T Consensus 197 ea~~l~d~i~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 237 (353)
T TIGR03265 197 EALSMADRIVV-MNHGVIEQVGTPQEIYRHPATPFVADFVGE 237 (353)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHHhcCC
Confidence 78899999975 999999999999999999987777666653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=373.93 Aligned_cols=202 Identities=8% Similarity=0.082 Sum_probs=168.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|++... .+ |+|+||+|++||.+||+||||||||||+++|+|+++ |++|+|.+||.++.
T Consensus 477 ~I~~~~vsf~y~~~~~-~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-----p~~G~I~idg~~i~--- 544 (710)
T TIGR03796 477 YVELRNITFGYSPLEP-PL---IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-----PWSGEILFDGIPRE--- 544 (710)
T ss_pred eEEEEEEEEecCCCCC-Cc---ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEeHH---
Confidence 5999999999975422 14 677999999999999999999999999999999999 99999999999986
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.+...+.+...++|+|++.++..++++|+.++.. ...++++.++++.+++.+++..+|+||
T Consensus 545 ------------~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~-------~~~~~~i~~al~~~~l~~~i~~lp~gl 605 (710)
T TIGR03796 545 ------------EIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-------TIPDADLVRACKDAAIHDVITSRPGGY 605 (710)
T ss_pred ------------HCCHHHHHhheeEEecCChhhhccHHHHhhCCCC-------CCCHHHHHHHHHHhCCHHHHHhCcCcc
Confidence 1223334444555566666666777777765421 233567889999999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec-hhhhcccc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTD 286 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH-~~~~~~aD 286 (346)
+|.|+|+|. .||||||||++||||| |||||+||. ++|+|+||| -.....||
T Consensus 606 ~t~i~e~G~------~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D 679 (710)
T TIGR03796 606 DAELAEGGA------NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCD 679 (710)
T ss_pred cceeccCCC------CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCC
Confidence 999999954 8999999999999999 999999994 899999999 34455699
Q ss_pred EEEEEecCCeEeecCCccccccC
Q 019066 287 RARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 287 ri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||+ +|++|++++.|+++++++.
T Consensus 680 ~Ii-vl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 680 EII-VLERGKVVQRGTHEELWAV 701 (710)
T ss_pred EEE-EEeCCEEEEecCHHHHHHc
Confidence 996 4999999999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=345.58 Aligned_cols=258 Identities=16% Similarity=0.180 Sum_probs=206.7
Q ss_pred CCCcceeeeeccccccccccccccccccccCCCCCCCCc----ccchhhhhhhhHHHHHHhhhhhhhhcc-----CCCcE
Q 019066 1 MGGEKTTSRFFTPGEEIISPVDDFDIPLLSGDDEGSRDS----WDSLVDQRRRDAVFREVLQSYDQLRTR-----IGSLT 71 (346)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l 71 (346)
++||+|.+. -+....++||+.++.+. |-.....+.+..|+.+.+.+.|..... ++..|
T Consensus 269 i~ge~t~G~-------------mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L 335 (580)
T COG4618 269 IKGEITPGM-------------MIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGAL 335 (580)
T ss_pred EcCcCCcch-------------hhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCcee
Confidence 356666666 45556788999988887 333345667778899999887775444 34469
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
.++++++.=++.+ ..+ |++|||++.+||.++||||||||||||.|+|.|..+ |.+|.|++||.++++ |
T Consensus 336 ~Ve~l~~~PPg~~-~pi---l~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~-----p~~G~VRLDga~l~q-W-- 403 (580)
T COG4618 336 SVERLTAAPPGQK-KPI---LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP-----PTSGSVRLDGADLRQ-W-- 403 (580)
T ss_pred eEeeeeecCCCCC-Ccc---eecceeEecCCceEEEECCCCccHHHHHHHHHcccc-----cCCCcEEecchhhhc-C--
Confidence 9999998655443 235 666999999999999999999999999999999999 999999999999861 1
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
+....++++||.+||.-+|.|+|.||+.-|. ++...+++.++++..+.++-+.++|+||||
T Consensus 404 -d~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~------------------~~~d~~kIieAA~lAgvHelIl~lP~GYdT 464 (580)
T COG4618 404 -DREQLGRHIGYLPQDVELFDGTIAENIARFG------------------EEADPEKVIEAARLAGVHELILRLPQGYDT 464 (580)
T ss_pred -CHHHhccccCcCcccceecCCcHHHHHHhcc------------------ccCCHHHHHHHHHHcChHHHHHhCcCCccC
Confidence 1112245666766666666666555554221 244567889999999999999999999999
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhhccc
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 285 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~~~a 285 (346)
.||+.|. .||||||||+++|||| |||-|+||. |.|+|+||| ..+...+
T Consensus 465 ~iG~~G~------~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 465 RIGEGGA------TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred ccCCCCC------CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 9999954 9999999999999999 999999994 999999999 6788889
Q ss_pred cEEEEEecCCeEeecCCccccccC
Q 019066 286 DRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 286 Dri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|.+ |++|++-..|+.+|++.+
T Consensus 539 Dkilv-l~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 539 DKILV-LQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ceeee-ecCChHHhcCCHHHHHHH
Confidence 99975 999999999999998865
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=373.46 Aligned_cols=224 Identities=12% Similarity=0.122 Sum_probs=181.1
Q ss_pred hhhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
...+|+.++++.+++.... ....|+++||+|+|+++.. + |+|+||+|++||++||+||||||||||+
T Consensus 443 ~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~--i---L~~isl~i~~G~~vaIvG~SGsGKSTLl 517 (708)
T TIGR01193 443 VANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN--I---LSDISLTIKMNSKTTIVGMSGSGKSTLA 517 (708)
T ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCCc--c---eeceeEEECCCCEEEEECCCCCCHHHHH
Confidence 3346677877655443211 1235999999999975443 4 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
++|+|+++ |++|+|++||.++. .+...+.+...++|+|++.++..++++|+.++..
T Consensus 518 klL~gl~~-----p~~G~I~idg~~i~---------------~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~---- 573 (708)
T TIGR01193 518 KLLVGFFQ-----ARSGEILLNGFSLK---------------DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAK---- 573 (708)
T ss_pred HHHhccCC-----CCCcEEEECCEEHH---------------HcCHHHHHHheEEEecCceehhHHHHHHHhccCC----
Confidence 99999999 99999999999986 1233334445555666666777788888876521
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
....++++.++++.+++++++..+|+||+|.|+|.|. .||||||||++||||| |||||+||.
T Consensus 574 --~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~------~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~ 645 (708)
T TIGR01193 574 --ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS------SISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645 (708)
T ss_pred --CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC------CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 1223467889999999999999999999999999854 8999999999999999 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ......||+|++ |++|++++.|++++++..
T Consensus 646 te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~-l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 646 TEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIV-LDHGKIIEQGSHDELLDR 698 (708)
T ss_pred HHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEE-EECCEEEEECCHHHHHhc
Confidence 789999999 455567999964 999999999999999865
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=350.44 Aligned_cols=219 Identities=16% Similarity=0.095 Sum_probs=176.3
Q ss_pred HHHHHHhhhhhhhhcc-------CCCc--EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 51 AVFREVLQSYDQLRTR-------IGSL--TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 51 ~~~~~~~~~~~~~~~~-------~~~~--l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
+.++..++.+++.... ..+- ++++|+++.|++++. + ++|+||++++|+.+||||+||||||||+++
T Consensus 292 d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~--~---l~~l~~t~~~g~~talvG~SGaGKSTLl~l 366 (559)
T COG4988 292 DKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKP--A---LSDLNLTIKAGQLTALVGASGAGKSTLLNL 366 (559)
T ss_pred HHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCc--c---cCCceeEecCCcEEEEECCCCCCHHHHHHH
Confidence 3456666655543222 1123 445599999988764 4 666999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|+|+++ |++|+|.+||.++. .....+.+....+|.|++.+++.++++|+.++..
T Consensus 367 L~G~~~-----~~~G~I~vng~~l~---------------~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~------ 420 (559)
T COG4988 367 LLGFLA-----PTQGEIRVNGIDLR---------------DLSPEAWRKQISWVSQNPYLFAGTIRENILLARP------ 420 (559)
T ss_pred HhCcCC-----CCCceEEECCcccc---------------ccCHHHHHhHeeeeCCCCccccccHHHHhhccCC------
Confidence 999999 99999999999886 1223333444455666666777777777776432
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
...++++.++++.+++.+++.. |+|+||++||+|. .|||||+||+++|||| ||||++||.
T Consensus 421 -~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~------~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE 492 (559)
T COG4988 421 -DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGA------GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE 492 (559)
T ss_pred -cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCC------CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHH
Confidence 3446788999999999999988 9999999999965 9999999999999999 999999983
Q ss_pred ------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| .....-||+|+ +|++|++++.|.++++..+
T Consensus 493 ~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~-vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 493 QIILQALQELAKQKTVLVITHRLEDAADADRIV-VLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEE-EecCCceeccCCHHHHhhc
Confidence 899999999 34555599996 5999999999999998765
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=336.57 Aligned_cols=210 Identities=13% Similarity=0.160 Sum_probs=172.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 12 ~~~L~l~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-----p~~G~I~~~g~~i~~ 80 (375)
T PRK09452 12 SPLVELRGISKSFDGKE---V---ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-----PDSGRIMLDGQDITH 80 (375)
T ss_pred CceEEEEEEEEEECCeE---E---EeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 56799999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
....++.++|++|+...|..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 81 ------~~~~~r~ig~vfQ~~~lfp~l----------tv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~------- 136 (375)
T PRK09452 81 ------VPAENRHVNTVFQSYALFPHM----------TVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEE------- 136 (375)
T ss_pred ------CCHHHCCEEEEecCcccCCCC----------CHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 111234567777776655443 4445554443211 1234455678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+++++|.+|||||||||+||||| |||+++||. |.|+|+||| +
T Consensus 137 ----------~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ 206 (375)
T PRK09452 137 ----------FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE 206 (375)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 57999999999999999999999 999999984 799999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
++..+||||++ |++|+|++.|++++++.+|.+.++..++...+
T Consensus 207 ea~~laDri~v-l~~G~i~~~g~~~~i~~~p~~~~~a~~~g~~n 249 (375)
T PRK09452 207 EALTMSDRIVV-MRDGRIEQDGTPREIYEEPKNLFVARFIGEIN 249 (375)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCcccHHHHHhcCccc
Confidence 78899999975 99999999999999999999888888776443
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=370.11 Aligned_cols=224 Identities=16% Similarity=0.160 Sum_probs=181.4
Q ss_pred hhhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
...+|+.++++.+++.... ....|+++||+|+|++... .+ |+|+||+|++||++||+|+||||||||+
T Consensus 433 ~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~-~v---L~~i~l~i~~G~~iaIvG~sGsGKSTLl 508 (694)
T TIGR03375 433 TALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQET-PA---LDNVSLTIRPGEKVAIIGRIGSGKSTLL 508 (694)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCCCc-cc---eeeeeEEECCCCEEEEECCCCCCHHHHH
Confidence 3446678888765542211 1235999999999975331 13 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
++|+|+|+ |++|+|.+||.++. .+...+.+...++|+|++.++..++++|+.++..
T Consensus 509 klL~gl~~-----p~~G~I~idg~~l~---------------~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~---- 564 (694)
T TIGR03375 509 KLLLGLYQ-----PTEGSVLLDGVDIR---------------QIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP---- 564 (694)
T ss_pred HHHhcCCC-----CCCceEEECCEEhh---------------hCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC----
Confidence 99999999 99999999999986 1233344445566666677777788888876432
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
...++++.++++.+++.+++..+|+||+|.|||+|. .||||||||++||||| |||||+||.
T Consensus 565 ---~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~------~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~ 635 (694)
T TIGR03375 565 ---YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGR------SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635 (694)
T ss_pred ---CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 223567889999999999999999999999999954 8999999999999999 999999984
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| -...+.||+|+ +|++|++++.|+++++++.
T Consensus 636 te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~ii-vl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 636 SEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRII-VMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EEeCCEEEeeCCHHHHHHH
Confidence 799999999 34556799996 4999999999999988754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=319.25 Aligned_cols=201 Identities=18% Similarity=0.249 Sum_probs=165.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+++++++++++|+++.. + |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|.|.++|.++..
T Consensus 2 ~~i~~~~l~~~y~~~~~--~---l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-----p~~G~v~~~g~~~~~- 70 (235)
T COG1122 2 RMIEAENLSFRYPGRKA--A---LKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-----PTSGEVLVDGLDTSS- 70 (235)
T ss_pred ceEEEEEEEEEcCCCce--e---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-----CCCCEEEECCeeccc-
Confidence 46899999999987633 4 777999999999999999999999999999999999 999999999988641
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.......++.++++||++-. .++..+|.+.++|++...+. +.++.++++.++++.+++.+
T Consensus 71 --~~~~~~~~~~vG~VfQnpd~---------q~~~~tV~~evafg~~n~g~-~~~e~~~rv~~~l~~vgl~~-------- 130 (235)
T COG1122 71 --EKSLLELRQKVGLVFQNPDD---------QLFGPTVEDEVAFGLENLGL-PREEIEERVAEALELVGLEE-------- 130 (235)
T ss_pred --hhhHHHhhcceEEEEECccc---------ccccCcHHHHHhhchhhcCC-CHHHHHHHHHHHHHHcCchh--------
Confidence 00111124445555555422 23444677777777765443 34578899999999999998
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
++++.|++|||||||||+||.+| |||||+||+ |+|+|++|| +.
T Consensus 131 ---------~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 131 ---------LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred ---------hccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 57999999999999999999999 999999985 689999999 67
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+..+|||+++ |++|+++.+|++.+++.+.
T Consensus 202 ~~~~ad~v~v-l~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 202 VLEYADRVVV-LDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHhhCCEEEE-EECCEEeecCCHHHHhhhh
Confidence 9999999964 9999999999999888764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=331.17 Aligned_cols=225 Identities=13% Similarity=0.128 Sum_probs=170.9
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||++.|+... .+.+ |+||||+|++||+++|+|+||||||||+++|+|++++. ..+++|+|.++|+++...
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRA---VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-GRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCCCccEEE---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CCCcceEEEECCEECCcC
Confidence 689999999997532 1236 66699999999999999999999999999999999621 114899999999997522
Q ss_pred ccccccccCCCCccceeecccc--cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRS--LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~--~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
...+...+.++.+++++|++.. ...+ ++.+++......+......+.++++.++++.+||.+..
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~----------~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~---- 144 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCY----------TVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA---- 144 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH----
Confidence 2111122334568888888642 1111 12222222211111123455678899999999997521
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..+++++++|||||+||++||||| ||||++||. |.|+|+|||
T Consensus 145 ----------~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl 214 (326)
T PRK11022 145 ----------SRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL 214 (326)
T ss_pred ----------HHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 146899999999999999999999 999999983 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+.+.++||||++ |++|+|++.|++++++.+|.++|++.++.+..
T Consensus 215 ~~~~~~adri~v-m~~G~ive~g~~~~~~~~p~hpyt~~ll~~~~ 258 (326)
T PRK11022 215 ALVAEAAHKIIV-MYAGQVVETGKAHDIFRAPRHPYTQALLRALP 258 (326)
T ss_pred HHHHHhCCEEEE-EECCEEEEECCHHHHhhCCCChHHHHHHHhCc
Confidence 467789999975 99999999999999999999999998887653
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=362.97 Aligned_cols=222 Identities=12% Similarity=0.087 Sum_probs=175.8
Q ss_pred hhhHHHHHHhhhhhhhhcc-----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
...+++.++++.+++.... ....|+++|++|+|+++.. + |+|+||+|++||++||+|+||||||||+++|
T Consensus 313 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~--i---l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL 387 (592)
T PRK10790 313 VAGERVFELMDGPRQQYGNDDRPLQSGRIDIDNVSFAYRDDNL--V---LQNINLSVPSRGFVALVGHTGSGKSTLASLL 387 (592)
T ss_pred HHHHHHHHHhcCCCccCCCCccCCCCCeEEEEEEEEEeCCCCc--e---eeceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3345677777654332111 1234999999999975433 4 7779999999999999999999999999999
Q ss_pred hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCCh
Q 019066 123 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 202 (346)
Q Consensus 123 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~ 202 (346)
+|+++ |++|+|.+||.++. . +.....+..+++|+|++.+|..++++|+.++.
T Consensus 388 ~gl~~-----p~~G~I~idg~~i~------~---------~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-------- 439 (592)
T PRK10790 388 MGYYP-----LTEGEIRLDGRPLS------S---------LSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-------- 439 (592)
T ss_pred hcccC-----CCCceEEECCEEhh------h---------CCHHHHHhheEEEccCCccccchHHHHHHhCC--------
Confidence 99999 99999999999986 1 22233333444455555555666667776542
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
...++++.++++.+|+.+.+.++|+||+|.|+|.|. .||||||||++||||| |||||+||+
T Consensus 440 ~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~------~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~ 513 (592)
T PRK10790 440 DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN------NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQ 513 (592)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCC------CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 123467889999999999999999999999999854 8999999999999999 999999984
Q ss_pred -----------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -----------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ......||+|+ +|++|++++.|+++++++.
T Consensus 514 ~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii-~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 514 AIQQALAAVREHTTLVVIAHRLSTIVEADTIL-VLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEEEcCHHHHHhC
Confidence 789999999 44555699996 5999999999999999866
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=332.01 Aligned_cols=220 Identities=13% Similarity=0.169 Sum_probs=172.0
Q ss_pred CCcEEEeeeEEEeCCC----------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCce
Q 019066 68 GSLTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 137 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~----------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~ 137 (346)
.++|+++||+++|+.+ ..+.+ ++||||+|++||+++|+|+||||||||+++|+|+++ |++|+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-----p~~G~ 77 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKA---VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-----ATDGE 77 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-----CCCcE
Confidence 5789999999999631 11336 666999999999999999999999999999999999 99999
Q ss_pred EEECceeCCCcccccccccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhcc-CCChHHHHHHHHHHHH
Q 019066 138 VTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIR-RSDSSSLRNRMRCKAH 214 (346)
Q Consensus 138 I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~l~ 214 (346)
|+++|+++...... .....++.++|++|++. .+..+ ++.+|+.++...+. .....+.++++.++++
T Consensus 78 I~~~G~~i~~~~~~-~~~~~r~~i~~v~Q~~~~~l~p~~----------tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 146 (331)
T PRK15079 78 VAWLGKDLLGMKDD-EWRAVRSDIQMIFQDPLASLNPRM----------TIGEIIAEPLRTYHPKLSRQEVKDRVKAMML 146 (331)
T ss_pred EEECCEECCcCCHH-HHHHHhCceEEEecCchhhcCCCC----------CHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 99999998522111 11112345777777753 22222 34444444332221 1234566778899999
Q ss_pred HcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------
Q 019066 215 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 269 (346)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------- 269 (346)
.+++.+. .+++++++|||||+||++||||| ||||++||.
T Consensus 147 ~vgl~~~----------------~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (331)
T PRK15079 147 KVGLLPN----------------LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 210 (331)
T ss_pred HcCCChH----------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 9999642 46899999999999999999999 999999983
Q ss_pred -CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 270 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 270 -g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
|.|+|+||| +.+.++||||++ |++|+|++.|++++++.+|.++|++.++....
T Consensus 211 ~~~til~iTHdl~~~~~~~dri~v-l~~G~ive~g~~~~i~~~~~~py~~~l~~~~~ 266 (331)
T PRK15079 211 MGLSLIFIAHDLAVVKHISDRVLV-MYLGHAVELGTYDEVYHNPLHPYTKALMSAVP 266 (331)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEEcCHHHHHcCCCCHHHHHHHhhCC
Confidence 789999999 568889999975 99999999999999999999999988887654
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=332.85 Aligned_cols=208 Identities=14% Similarity=0.214 Sum_probs=169.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 2 ~L~i~~l~~~~~~~~---~---l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~-- 68 (353)
T PRK10851 2 SIEIANIKKSFGRTQ---V---LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-----QTSGHIRFHGTDVSR-- 68 (353)
T ss_pred EEEEEEEEEEeCCeE---E---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 489999999997632 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc---cCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
....++.++|++|+...+..+ ++.+|+.++.... ...+..+.++++.++++.++|.+
T Consensus 69 ----~~~~~r~i~~v~Q~~~l~p~~----------tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~------ 128 (353)
T PRK10851 69 ----LHARDRKVGFVFQHYALFRHM----------TVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH------ 128 (353)
T ss_pred ----CCHHHCCEEEEecCcccCCCC----------cHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch------
Confidence 111234567777776555443 4445554443211 11233456778999999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
++++++.+||||||||++||||| ||||++||. ++|+|+|||
T Consensus 129 -----------~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 129 -----------LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 56999999999999999999999 999999984 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIV 322 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 322 (346)
+++..+||||++ |++|++++.|++++++.+|.+.++..++...
T Consensus 198 ~ea~~~~Dri~v-l~~G~i~~~g~~~~i~~~p~~~~~~~~~g~~ 240 (353)
T PRK10851 198 EEAMEVADRVVV-MSQGNIEQAGTPDQVWREPATRFVLEFMGEV 240 (353)
T ss_pred HHHHHhCCEEEE-EECCEEEEEcCHHHHHhCccchHHHHhcCcc
Confidence 578999999975 9999999999999999999888877776643
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=331.18 Aligned_cols=224 Identities=13% Similarity=0.140 Sum_probs=171.6
Q ss_pred CCCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC---CceEEECc
Q 019066 67 IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNS 142 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~---~G~I~~~g 142 (346)
..++|+++||++.|+.. ..+.+ |+||||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-----p~~~~sG~I~~~G 80 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTA---VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-----ANGRIGGSATFNG 80 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEE---EeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-----CCCCCCeEEEECC
Confidence 35689999999999532 12336 666999999999999999999999999999999998 74 99999999
Q ss_pred eeCCCcccccccccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 143 SVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 143 ~~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
+++......+...+.++.++|++|++. ....+ ++.+++.+....+......+..+++.++++.++|.+
T Consensus 81 ~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~----------~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~ 150 (330)
T PRK09473 81 REILNLPEKELNKLRAEQISMIFQDPMTSLNPYM----------RVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE 150 (330)
T ss_pred EECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC
Confidence 998532111111223456788888863 22222 222333222211212234556678899999999975
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 274 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvi 274 (346)
.. ..+++++++|||||+||++||||| ||||++||. |.|+|
T Consensus 151 ~~--------------~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til 216 (330)
T PRK09473 151 AR--------------KRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAII 216 (330)
T ss_pred hH--------------HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 11 035789999999999999999999 999999983 78999
Q ss_pred EEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 275 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 275 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+||| +.+.++||||++ |++|+|++.|++++++.+|.++|++.++.+..
T Consensus 217 ~iTHdl~~~~~~~Dri~v-m~~G~ive~g~~~~i~~~p~~pyt~~l~~~~~ 266 (330)
T PRK09473 217 MITHDLGVVAGICDKVLV-MYAGRTMEYGNARDVFYQPSHPYSIGLLNAVP 266 (330)
T ss_pred EEECCHHHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCCHHHHHHHHhCC
Confidence 9999 467789999975 99999999999999999999999999887654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=330.02 Aligned_cols=220 Identities=14% Similarity=0.157 Sum_probs=171.1
Q ss_pred CCcEEEeeeEEEeCCC-------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 68 GSLTDAKNKILSYTPG-------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~-------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
.++|+++||++.|+.. ..+.+ |+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-----p~~G~i~~ 74 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKA---LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-----PTGGELYY 74 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeE---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCcEEEE
Confidence 4579999999999631 11346 666999999999999999999999999999999999 99999999
Q ss_pred CceeCCCcccccccccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCC
Q 019066 141 NSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 141 ~g~~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l 218 (346)
+|+++...... .....++.++|++|++. ....+ ++.+++.++...+......+.++++.++++.+||
T Consensus 75 ~g~~l~~~~~~-~~~~~r~~i~~v~Q~~~~~l~p~~----------~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL 143 (327)
T PRK11308 75 QGQDLLKADPE-AQKLLRQKIQIVFQNPYGSLNPRK----------KVGQILEEPLLINTSLSAAERREKALAMMAKVGL 143 (327)
T ss_pred CCEEcCcCCHH-HHHHHhCCEEEEEcCchhhcCCcc----------CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCC
Confidence 99997522111 11122446788888863 12111 2333333222211112344566789999999999
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------Cce
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKP 272 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~t 272 (346)
.+. .+++++++|||||+||++||||| ||||++||. |.|
T Consensus 144 ~~~----------------~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~t 207 (327)
T PRK11308 144 RPE----------------HYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLS 207 (327)
T ss_pred ChH----------------HhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCE
Confidence 742 36899999999999999999999 999999983 799
Q ss_pred EEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 273 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 273 viiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+|+||| ..+.++||+|++ |++|+|++.|++++++.+|.++|++.++.+..
T Consensus 208 il~iTHdl~~~~~~adrv~v-m~~G~ive~g~~~~~~~~p~hpyt~~ll~~~p 259 (327)
T PRK11308 208 YVFISHDLSVVEHIADEVMV-MYLGRCVEKGTKEQIFNNPRHPYTQALLSATP 259 (327)
T ss_pred EEEEeCCHHHHHHhCCEEEE-EECCEEEEECCHHHHhcCCCCHHHHHHHHhCC
Confidence 999999 567789999975 99999999999999999999999998887653
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=340.38 Aligned_cols=224 Identities=13% Similarity=0.161 Sum_probs=188.5
Q ss_pred hhhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
.+..|++++.+++++...+ ....++++||+|+|++... .+ |+|+||++++||.+||+|+||||||||+.+
T Consensus 308 ~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~-~~---L~~~~l~l~~GEkvAIlG~SGsGKSTllqL 383 (573)
T COG4987 308 ASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQT-KA---LKNFNLTLAQGEKVAILGRSGSGKSTLLQL 383 (573)
T ss_pred HHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCCcc-ch---hhccceeecCCCeEEEECCCCCCHHHHHHH
Confidence 3456788888887776433 1116999999999987653 25 666999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|.|.++ |++|+|.++|.++. .+..++.+....++.|.+.+|..++++|+.++..
T Consensus 384 l~~~~~-----~~~G~i~~~g~~~~---------------~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~------ 437 (573)
T COG4987 384 LAGAWD-----PQQGSITLNGVEIA---------------SLDEQALRETISVLTQRVHLFSGTLRDNLRLANP------ 437 (573)
T ss_pred HHhccC-----CCCCeeeECCcChh---------------hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC------
Confidence 999999 99999999999986 2444445555566777888888888899876543
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
...++.+.++++++||++.++..|+|++|.|||.|. .|||||+||++|||+| ||||.|||+
T Consensus 438 -~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~------~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE 510 (573)
T COG4987 438 -DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGR------RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510 (573)
T ss_pred -CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCC------cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhH
Confidence 345678899999999999999999999999999965 9999999999999998 999999995
Q ss_pred ------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+|||+ .-.+.||||+ +|++|+++++|++.+++.+
T Consensus 511 ~~vL~ll~~~~~~kTll~vTHrL~~le~~drIi-vl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 511 RQVLALLFEHAEGKTLLMVTHRLRGLERMDRII-VLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHHHHHHHHHhcCCeEEEEecccccHhhcCEEE-EEECCeeeecCCHHhhhcc
Confidence 9999999994 2345599996 5999999999999999873
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=312.12 Aligned_cols=209 Identities=18% Similarity=0.253 Sum_probs=173.9
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+++++++|+++|++ .+| ++||||+|++||+++||||||||||||+|+|+|+|+ |++|+|.++|+++..
T Consensus 3 ~lL~v~~l~k~FGG---l~A---l~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-----P~~G~v~~~G~~it~- 70 (250)
T COG0411 3 PLLEVRGLSKRFGG---LTA---VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-----PSSGTVIFRGRDITG- 70 (250)
T ss_pred ceeeeccceeecCC---EEE---EeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-----CCCceEEECCcccCC-
Confidence 57899999999987 457 555999999999999999999999999999999999 999999999999873
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.+.+.+.+..+...||..+.|.++ |.+|+......-.. +. +.... ......+..+++.++|+.+||.+
T Consensus 71 --l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~-~~-~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~----- 141 (250)
T COG0411 71 --LPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG-LS-GLLGRPRARKEEREARERARELLEFVGLGE----- 141 (250)
T ss_pred --CCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhh-hh-hhhccccchhhHHHHHHHHHHHHHHcCCch-----
Confidence 334455677788889999999888 88888765431101 11 11111 11235677899999999999998
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..+++..+||+|||+|+.||||| |||.+||.+ |.|+++|.|
T Consensus 142 ------------~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd 209 (250)
T COG0411 142 ------------LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD 209 (250)
T ss_pred ------------hhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 67999999999999999999999 999999753 699999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
+.+..+||||+| |+.|+++++|+|+++..+|.
T Consensus 210 M~~Vm~l~dri~V-l~~G~~IAeG~P~eV~~dp~ 242 (250)
T COG0411 210 MKLVMGLADRIVV-LNYGEVIAEGTPEEVRNNPR 242 (250)
T ss_pred cHHHhhhccEEEe-ccCCcCcccCCHHHHhcCHH
Confidence 689999999975 99999999999999988865
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=356.19 Aligned_cols=223 Identities=13% Similarity=0.162 Sum_probs=176.7
Q ss_pred hHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 50 DAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 50 ~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
..++.++++.+++.... ....|+++||+|+|+++.. .+ |+|+||+|++||.+||+|+||||||||+++|+
T Consensus 315 ~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~-~i---l~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~ 390 (582)
T PRK11176 315 CQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGKEV-PA---LRNINFKIPAGKTVALVGRSGSGKSTIANLLT 390 (582)
T ss_pred HHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCCCC-cc---ccCceEEeCCCCEEEEECCCCCCHHHHHHHHH
Confidence 45667777554432111 1225999999999976422 14 77799999999999999999999999999999
Q ss_pred hhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChH
Q 019066 124 KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSS 203 (346)
Q Consensus 124 gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~ 203 (346)
|+++ |++|+|++||.++. . +...+.+...++++|++.++..++++|+.++.. ..
T Consensus 391 gl~~-----p~~G~I~i~g~~i~------~---------~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------~~ 444 (582)
T PRK11176 391 RFYD-----IDEGEILLDGHDLR------D---------YTLASLRNQVALVSQNVHLFNDTIANNIAYART------EQ 444 (582)
T ss_pred hccC-----CCCceEEECCEEhh------h---------cCHHHHHhhceEEccCceeecchHHHHHhcCCC------CC
Confidence 9999 99999999999986 1 222233334445555555666677777765421 12
Q ss_pred HHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----
Q 019066 204 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----- 269 (346)
Q Consensus 204 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----- 269 (346)
..++++.++++.+++.+++.++|+|++|.|||+|. +||||||||++||||| |||||+||+
T Consensus 445 ~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~------~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~ 518 (582)
T PRK11176 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV------LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518 (582)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC------cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHH
Confidence 24567889999999999999999999999999854 8999999999999999 999999985
Q ss_pred ----------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ----------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ....+.||+|+ +|++|++++.|+++++++.
T Consensus 519 i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii-~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 519 IQAALDELQKNRTSLVIAHRLSTIEKADEIL-VVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHHHHHHHhCCCEEEEEecchHHHHhCCEEE-EEECCEEEEeCCHHHHHhC
Confidence 789999999 45566799996 5999999999999999866
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=314.43 Aligned_cols=180 Identities=20% Similarity=0.312 Sum_probs=158.7
Q ss_pred CCcEEEeeeEEEeCCCC------ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC
Q 019066 68 GSLTDAKNKILSYTPGA------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~------~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
.++++++||++.|..+. .++|+++ |||+|++||+++|||+||||||||.|+|.|+++ |++|+|+|+
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~---Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-----pt~G~i~f~ 73 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDG---VSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-----PTSGEILFE 73 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecc---eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-----CCCceEEEc
Confidence 45799999999996432 2457555 999999999999999999999999999999999 999999999
Q ss_pred ceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
|+++.. +. ..+..+++.++|+.+|+.++
T Consensus 74 g~~i~~---------------~~-------------------------------------~~~~~~~v~elL~~Vgl~~~ 101 (268)
T COG4608 74 GKDITK---------------LS-------------------------------------KEERRERVLELLEKVGLPEE 101 (268)
T ss_pred Ccchhh---------------cc-------------------------------------hhHHHHHHHHHHHHhCCCHH
Confidence 998751 10 13456789999999999875
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEE
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 275 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvii 275 (346)
.+++||++|||||+||++||||| |||+|+||- |.|.++
T Consensus 102 ----------------~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lF 165 (268)
T COG4608 102 ----------------FLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLF 165 (268)
T ss_pred ----------------HhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEE
Confidence 47999999999999999999999 999999983 999999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 324 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 324 (346)
||| ..+..+||||+| |+.|+||+.|+.++++.+|.|+||+.++.+...
T Consensus 166 IsHDL~vv~~isdri~V-My~G~iVE~g~~~~~~~~p~HpYTk~Ll~a~p~ 215 (268)
T COG4608 166 ISHDLSVVRYISDRIAV-MYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPV 215 (268)
T ss_pred EEEEHHhhhhhcccEEE-EecCceeEecCHHHHhhCCCCHHHHHHHHhCCc
Confidence 999 468899999986 999999999999999999999999999997543
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=363.48 Aligned_cols=225 Identities=12% Similarity=0.123 Sum_probs=177.3
Q ss_pred hhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
..+++++.++.+++.... ....|+++||+|+|++.....+ |+|+||+|++||+++|+||||||||||+++
T Consensus 450 a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~SGsGKSTLl~l 526 (711)
T TIGR00958 450 ASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPV---LKGLTFTLHPGEVVALVGPSGSGKSTVAAL 526 (711)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCcc---ccCceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 345677777665543211 1235999999999975321124 677999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|.|+++ |++|+|++||+++. + +...+.+...++|+|++.++..++++|+.++..
T Consensus 527 L~gl~~-----p~~G~I~idg~~i~------~---------~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~------ 580 (711)
T TIGR00958 527 LQNLYQ-----PTGGQVLLDGVPLV------Q---------YDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT------ 580 (711)
T ss_pred HHhccC-----CCCCEEEECCEEHH------h---------cCHHHHHhhceEEecCccccccCHHHHHhcCCC------
Confidence 999999 99999999999986 1 222223333444555555556667777766532
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
...++++.++++.+++++++.++|+||+|.+||+|. +||||||||++||||| |||||+||.
T Consensus 581 -~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~------~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te 653 (711)
T TIGR00958 581 -DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS------QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECE 653 (711)
T ss_pred -CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC------cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHH
Confidence 122567889999999999999999999999999854 8999999999999999 999999984
Q ss_pred ----------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 ----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 ----------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++|+|+||| -.....||+|+ +|++|+|++.|+|++++++.
T Consensus 654 ~~i~~~~~~~~~TvIiItHrl~~i~~aD~Ii-vL~~G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 654 QLLQESRSRASRTVLLIAHRLSTVERADQIL-VLKKGSVVEMGTHKQLMEDQ 704 (711)
T ss_pred HHHHHhhccCCCeEEEEeccHHHHHhCCEEE-EEECCEEEEeeCHHHHHhCC
Confidence 799999999 34455699996 59999999999999998763
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=354.00 Aligned_cols=224 Identities=12% Similarity=0.123 Sum_probs=177.9
Q ss_pred hhhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
.+.+|+.++++.+++..+. ..+.|+++||+|+|++++. .+ |+|+||+|++||+++|+||||||||||++
T Consensus 309 ~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~-~i---l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 384 (574)
T PRK11160 309 ASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQ-PV---LKGLSLQIKAGEKVALLGRTGCGKSTLLQ 384 (574)
T ss_pred HHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEEEECCCCCC-cc---eecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 3456778888766543211 1235999999999975421 14 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ |++|+|++||.++. + +...+.+...++|+|++.++..++.+|+.++..
T Consensus 385 ll~g~~~-----p~~G~I~i~g~~i~------~---------~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~----- 439 (574)
T PRK11160 385 LLTRAWD-----PQQGEILLNGQPIA------D---------YSEAALRQAISVVSQRVHLFSATLRDNLLLAAP----- 439 (574)
T ss_pred HHhcCCC-----CCCceEEECCEEhh------h---------CCHHHHHhheeEEcccchhhcccHHHHhhcCCC-----
Confidence 9999999 99999999999986 1 222233334444555556666677777766432
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
...++++.++++.+++++++.. |+||+|.|||++. .||||||||++||||| ||||++||.
T Consensus 440 --~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~------~LSgGqrqRialARall~~~~ililDE~ts~lD~~t 510 (574)
T PRK11160 440 --NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGR------QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510 (574)
T ss_pred --ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCC------CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 2345678899999999999999 9999999999954 8999999999999999 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++|+|+||| ......||+|+ +|++|++++.|+++++++..
T Consensus 511 ~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 511 ERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC-VMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred HHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEE-EEeCCeEEEeCCHHHHHhcC
Confidence 799999999 33445599996 59999999999999998653
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=333.11 Aligned_cols=209 Identities=14% Similarity=0.171 Sum_probs=171.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 17 ~~~l~l~~v~~~~~~~~---~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-----p~~G~I~i~g~~i~~ 85 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQH---A---VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-----PTAGQIMLDGVDLSH 85 (377)
T ss_pred CceEEEEeEEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 55799999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
....++.++|++|+...|..+ |.+|+ .++.... ..+..+.++++.++++.+++.+
T Consensus 86 ------~~~~~r~ig~vfQ~~~lfp~ltv~eNi-----------~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~------ 141 (377)
T PRK11607 86 ------VPPYQRPINMMFQSYALFPHMTVEQNI-----------AFGLKQD-KLPKAEIASRVNEMLGLVHMQE------ 141 (377)
T ss_pred ------CCHHHCCEEEEeCCCccCCCCCHHHHH-----------HHHHHHc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 112244677777777666554 55554 4433211 1234556778999999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
+.++++.+|||||||||+||||| |||+++||. |.|+|+|||
T Consensus 142 -----------~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~ 210 (377)
T PRK11607 142 -----------FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210 (377)
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 57999999999999999999999 999999984 899999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+++..+|||+++ |++|++++.|++++++.+|.+.++..++...+
T Consensus 211 ~ea~~laDri~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g~~n 254 (377)
T PRK11607 211 EEAMTMAGRIAI-MNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVN 254 (377)
T ss_pred HHHHHhCCEEEE-EeCCEEEEEcCHHHHHhCCccHHHHHhcCccc
Confidence 578899999975 99999999999999999998887777776433
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=329.77 Aligned_cols=206 Identities=15% Similarity=0.184 Sum_probs=167.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC--ceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--AQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~--G~I~~~g~~i~~ 147 (346)
.|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 5 GIRIDHLRVAYGANT---V---LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-----AAGLTGRIAIADRDLTH 73 (362)
T ss_pred EEEEEEEEEEECCeE---E---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCEEEEECCEECCC
Confidence 489999999997532 4 777999999999999999999999999999999999 999 999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
....++.++|++|+...+..+ ++.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 74 ------~~~~~r~ig~vfQ~~~l~p~~----------tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~------- 129 (362)
T TIGR03258 74 ------APPHKRGLALLFQNYALFPHL----------KVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGD------- 129 (362)
T ss_pred ------CCHHHCCEEEEECCcccCCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCc-------
Confidence 111234567777776655443 4444444443221 1234556778999999999988
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC------------------CceEEEEec--
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH-- 278 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tviiiTH-- 278 (346)
++++++.+|||||||||+||||| ||||++||. |.|+|+|||
T Consensus 130 ----------~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 130 ----------AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 57999999999999999999999 999999873 579999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+++..+||||++ |++|++++.|++++++.+|.+.++..++..
T Consensus 200 ~ea~~l~dri~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 241 (362)
T TIGR03258 200 DDALTLADKAGI-MKDGRLAAHGEPQALYDAPADGFAAEFLGA 241 (362)
T ss_pred HHHHHhCCEEEE-EECCEEEEEcCHHHHHhCcCcHHHHHhhCc
Confidence 578899999975 999999999999999999987776666663
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=312.50 Aligned_cols=199 Identities=18% Similarity=0.237 Sum_probs=160.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++. . + |+||||+|++|++++||||||||||||+|+|+|+++ |.+|+|.+.|++...
T Consensus 2 ~~~i~v~nl~v~y~~~-~--v---l~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-----p~~G~i~~~g~~~~~ 70 (254)
T COG1121 2 MPMIEVENLTVSYGNR-P--V---LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-----PSSGEIKIFGKPVRK 70 (254)
T ss_pred CcEEEEeeeEEEECCE-e--e---eeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCcceEEEccccccc
Confidence 4579999999999865 3 4 777999999999999999999999999999999999 999999999987641
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh---ccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
...+..++|++|... +. .-||.+|++-+..+... +.....+..++++.++|+++|+.+
T Consensus 71 -------~~~~~~IgYVPQ~~~-~d-------~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~---- 131 (254)
T COG1121 71 -------RRKRLRIGYVPQKSS-VD-------RSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED---- 131 (254)
T ss_pred -------cccCCeEEEcCcccc-cC-------CCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh----
Confidence 112456788888651 11 12334555555554221 111223455789999999999998
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
+.++...+|||||+|||.||||| ||||+++|. |+||++|||
T Consensus 132 -------------~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD 198 (254)
T COG1121 132 -------------LRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD 198 (254)
T ss_pred -------------hhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67999999999999999999999 999999884 999999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
..+..+||+| + +=+++++..|++++++..+.
T Consensus 199 L~~v~~~~D~v-i-~Ln~~~~~~G~~~~~~~~~~ 230 (254)
T COG1121 199 LGLVMAYFDRV-I-CLNRHLIASGPPEEVLTEEN 230 (254)
T ss_pred cHHhHhhCCEE-E-EEcCeeEeccChhhccCHHH
Confidence 5789999999 4 55889999999999887543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=322.70 Aligned_cols=227 Identities=16% Similarity=0.188 Sum_probs=194.9
Q ss_pred CCcEEEeeeEEEeCC-CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~-~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++|+++.|.. +..+.++++ |||+|.+||++||||+||||||-..+.|+++++.+.-..-+|+|.|+|.++.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~---isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKG---ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CcceeeeccEEEEecCCcceEeecc---ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 568999999999953 233557555 9999999999999999999999999999999986554456799999999987
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhH-HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~-~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
..+..+...+++.+|+++||+++.. +.+ .++...+......++.....+.++++.++|+.+|+.+--
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtS---------LNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~--- 148 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTS---------LNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE--- 148 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccc---------cCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh---
Confidence 5555555667777888888888753 222 277778888888888888899999999999999997521
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..+++||++|||||||||+||.|| ||||.+||- |+++++|||
T Consensus 149 -----------~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHD 217 (534)
T COG4172 149 -----------KRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD 217 (534)
T ss_pred -----------hhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEecc
Confidence 167999999999999999999999 999999983 999999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
..+.++||||+| |..|+++|.|.++++|..|.|+||+.++.+
T Consensus 218 L~iVr~~ADrV~V-M~~G~ivE~~~t~~lF~~PqHpYTr~Ll~a 260 (534)
T COG4172 218 LGIVRKFADRVYV-MQHGEIVETGTTETLFAAPQHPYTRKLLAA 260 (534)
T ss_pred HHHHHHhhhhEEE-EeccEEeecCcHHHHhhCCCChHHHHHHhc
Confidence 578999999975 999999999999999999999999999875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=325.12 Aligned_cols=226 Identities=13% Similarity=0.209 Sum_probs=169.1
Q ss_pred CcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
++|+++||+++|+.. ....+ |+||||+|.+||+++|+|+||||||||+++|+|++++. ..|++|+|+|+|+++..
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~---l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-~~~~~G~i~~~g~~i~~ 77 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKA---VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-WRVTADRMRFDDIDLLR 77 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEE---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-CCCcceEEEECCEECCc
Confidence 479999999999532 11235 66699999999999999999999999999999998621 11589999999998752
Q ss_pred cccccccccCCCCccceeeccccc--ccchhhchHhhHHHHHhhhhcchhhc---c--CCChHHHHHHHHHHHHHcCCCc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSL--SDDASDNINMIKLWIMEGVRHGELVI---R--RSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~--~~~v~qn~~~~~~~v~~~i~~~~~~~---~--~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
....+...+.++.++|++|++... ..+ ++.+++.+..... . .......++++.++|+.+||.+
T Consensus 78 ~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~ 147 (330)
T PRK15093 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSE----------RVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKD 147 (330)
T ss_pred CCHHHHHHHhCCCEEEEecCcchhcCccc----------cHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCC
Confidence 221111123345678888886421 111 2333332211100 0 0011344578899999999975
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 274 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvi 274 (346)
.. ..+++++++|||||+||++||||| ||||++||. |.|+|
T Consensus 148 ~~--------------~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii 213 (330)
T PRK15093 148 HK--------------DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTIL 213 (330)
T ss_pred hH--------------HHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 21 035889999999999999999999 999999983 78999
Q ss_pred EEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 275 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 275 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
+||| ..+.++||||++ |++|+|++.|++++++.+|.++|++.++....
T Consensus 214 ~itHdl~~v~~~~dri~v-m~~G~ive~g~~~~i~~~p~~~y~~~ll~~~~ 263 (330)
T PRK15093 214 LISHDLQMLSQWADKINV-LYCGQTVETAPSKELVTTPHHPYTQALIRAIP 263 (330)
T ss_pred EEECCHHHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCCHHHHHHHHhCC
Confidence 9999 578889999975 99999999999999999999999988887654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=326.96 Aligned_cols=205 Identities=12% Similarity=0.174 Sum_probs=167.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~~~~---v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-----p~~G~I~~~g~~i~~-- 69 (369)
T PRK11000 3 SVTLRNVTKAYGDVV---I---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-----ITSGDLFIGEKRMND-- 69 (369)
T ss_pred EEEEEEEEEEeCCeE---E---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCC--
Confidence 589999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++.++|++|+...+..+ |.+|+. ++.... .....+.++++.++++.++|.+
T Consensus 70 ----~~~~~~~i~~v~Q~~~l~~~~tv~eni~-----------~~~~~~-~~~~~~~~~~~~~~l~~lgL~~-------- 125 (369)
T PRK11000 70 ----VPPAERGVGMVFQSYALYPHLSVAENMS-----------FGLKLA-GAKKEEINQRVNQVAEVLQLAH-------- 125 (369)
T ss_pred ----CCHhHCCEEEEeCCcccCCCCCHHHHHH-----------hHHhhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 111234567888776665543 555544 332211 1223455678899999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|+||| ++
T Consensus 126 ---------~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~ 196 (369)
T PRK11000 126 ---------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (369)
T ss_pred ---------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence 56899999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+..+||++++ |++|++++.|++++++..|.+.++..++..
T Consensus 197 ~~~~~d~i~v-l~~G~i~~~g~~~~i~~~p~~~~~~~~~g~ 236 (369)
T PRK11000 197 AMTLADKIVV-LDAGRVAQVGKPLELYHYPANRFVAGFIGS 236 (369)
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCcccHHHHHhcCC
Confidence 8899999975 999999999999999999887777666653
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=352.79 Aligned_cols=225 Identities=14% Similarity=0.127 Sum_probs=177.0
Q ss_pred hhhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
...+++.++++.+++.... ....|+++||+|+|++... .+ |+|+||+|++||+++|+|+||||||||+++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~-~i---l~~inl~i~~G~~v~IvG~sGsGKSTLl~l 377 (571)
T TIGR02203 302 AAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDR-PA---LDSISLVIEPGETVALVGRSGSGKSTLVNL 377 (571)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCCCC-cc---ccCeeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 3345677777655443211 1234999999999975322 14 677999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|+|+++ |++|+|+++|.++. . +...+.+...++++|++.++..++++|+.++..
T Consensus 378 L~gl~~-----~~~G~I~i~g~~i~------~---------~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~------ 431 (571)
T TIGR02203 378 IPRFYE-----PDSGQILLDGHDLA------D---------YTLASLRRQVALVSQDVVLFNDTIANNIAYGRT------ 431 (571)
T ss_pred HHhccC-----CCCCeEEECCEeHH------h---------cCHHHHHhhceEEccCcccccccHHHHHhcCCC------
Confidence 999999 99999999999986 1 122223333444555555566666677665421
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
++..++++.++++.+++++.+.++|+|++|.|+|.| ..||||||||++||||+ |||||+||.
T Consensus 432 ~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g------~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~ 505 (571)
T TIGR02203 432 EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENG------VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505 (571)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCC------CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 123357788999999999999999999999999985 38999999999999999 999999984
Q ss_pred ------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ......||+|+ +|++|++++.|+++++++.
T Consensus 506 ~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii-~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 506 RLVQAALERLMQGRTTLVIAHRLSTIEKADRIV-VMDDGRIVERGTHNELLAR 557 (571)
T ss_pred HHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEE-EEeCCEEEeeCCHHHHHHc
Confidence 799999999 45667799996 5999999999999998765
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=376.94 Aligned_cols=230 Identities=11% Similarity=0.159 Sum_probs=179.1
Q ss_pred hhhHHHHHHhhhhhhhh--cc----------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCH
Q 019066 48 RRDAVFREVLQSYDQLR--TR----------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGK 115 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~--~~----------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGK 115 (346)
...++++++++.+++.. +. ....|+|+||+|+|++.....+ |+|+||+|++|+++||||||||||
T Consensus 1131 ~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v---L~~lsl~i~~G~~vAIVG~SGsGK 1207 (1466)
T PTZ00265 1131 LSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI---YKDLTFSCDSKKTTAIVGETGSGK 1207 (1466)
T ss_pred HHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCcc---ccCeeEEEcCCCEEEEECCCCCCH
Confidence 33566788887654321 10 1124999999999975321224 666999999999999999999999
Q ss_pred HHHHHHHhhhccCC-------------------------------------------------CCCCCCceEEECceeCC
Q 019066 116 SSLVNRISKVFEND-------------------------------------------------KFASERAQVTYNSSVGD 146 (346)
Q Consensus 116 STLl~~L~gl~~~~-------------------------------------------------~~~p~~G~I~~~g~~i~ 146 (346)
|||+++|.|+|++. ...|++|+|++||.++.
T Consensus 1208 STl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~ 1287 (1466)
T PTZ00265 1208 STVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDIC 1287 (1466)
T ss_pred HHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHH
Confidence 99999999999920 00016999999999987
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.+...+.|..+++|+|++.+|..++++||.++.. ...+++++++++.+++++++..+|
T Consensus 1288 ---------------~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-------~at~eeI~~A~k~A~l~~fI~~LP 1345 (1466)
T PTZ00265 1288 ---------------DYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-------DATREDVKRACKFAAIDEFIESLP 1345 (1466)
T ss_pred ---------------hCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-------CCCHHHHHHHHHHcCCHHHHHhCc
Confidence 2333444555566666666777778888877632 224567999999999999999999
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~ 279 (346)
+||+|.|||+|. .||||||||++||||| |||||+||. ++|+|+||| -
T Consensus 1346 ~GydT~VGe~G~------~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1346 NKYDTNVGPYGK------SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred cccCCccCCCCC------cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH
Confidence 999999999964 8999999999999999 999999873 689999999 3
Q ss_pred hhhccccEEEEEecC----CeEe-ecCCccccccC
Q 019066 280 DLLSLTDRARIRTYL----GELL-GIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~----G~iv-~~g~~~~l~~~ 309 (346)
...+.||+|++ |++ |+++ +.|+|++++..
T Consensus 1420 sti~~aD~Ivv-l~~~~~~G~iv~e~Gth~eLl~~ 1453 (1466)
T PTZ00265 1420 ASIKRSDKIVV-FNNPDRTGSFVQAHGTHEELLSV 1453 (1466)
T ss_pred HHHHhCCEEEE-EeCCCCCCCEEEEecCHHHHHhc
Confidence 44556999964 999 9965 89999999864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=307.55 Aligned_cols=202 Identities=16% Similarity=0.191 Sum_probs=155.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~~~ 69 (235)
T cd03261 1 IELRGLTKSFGGRT---V---LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-----PDSGEVLIDGEDISGLSE 69 (235)
T ss_pred CeEEEEEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccCh
Confidence 57899999997532 4 777999999999999999999999999999999999 999999999998751100
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
......++.++|++|+...+..+ +.+|+ .++.............+++.++++.+++.+
T Consensus 70 -~~~~~~~~~i~~v~q~~~~~~~~tv~~~l-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 128 (235)
T cd03261 70 -AELYRLRRRMGMLFQSGALFDSLTVFENV-----------AFPLREHTRLSEEEIREIVLEKLEAVGLRG--------- 128 (235)
T ss_pred -hhHHHHhcceEEEccCcccCCCCcHHHHH-----------HHHHhhccCCCHHHHHHHHHHHHHHcCCch---------
Confidence 00011234567777776555433 44444 332211111123445677889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |+|||+||| +.+
T Consensus 129 --------~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~ 200 (235)
T cd03261 129 --------AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTA 200 (235)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH
Confidence 45888999999999999999999 999999983 689999999 568
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
..+||++++ |++|++++.|++++++.. .+++
T Consensus 201 ~~~~d~v~~-l~~G~i~~~g~~~~~~~~-~~~~ 231 (235)
T cd03261 201 FAIADRIAV-LYDGKIVAEGTPEELRAS-DDPL 231 (235)
T ss_pred HHhcCEEEE-EECCeEEEecCHHHHcCC-CChh
Confidence 889999965 999999999999888653 3344
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=324.24 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=157.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++......+...+.++.++|++|+...+
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-----p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-----PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-----CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 777999999999999999999999999999999999 999999999999862111111112245677777776666
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
..+ |.+|+.+ +.... .....+..+++.++++.++|+. +.++++.+|||||
T Consensus 84 ~~~TV~eNi~~-----------~~~~~-~~~~~~~~~~~~~~l~~vgL~~-----------------~~~~~p~~LSGGq 134 (363)
T TIGR01186 84 PHMTILQNTSL-----------GPELL-GWPEQERKEKALELLKLVGLEE-----------------YEHRYPDELSGGM 134 (363)
T ss_pred CCCCHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHhcCCch-----------------hhhCChhhCCHHH
Confidence 543 5555543 32211 1234556788999999999987 5699999999999
Q ss_pred HHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCC
Q 019066 251 QYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 251 rQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
|||++||||| ||||++||+ ++|+|+||| +++.++||||++ |++|++++.|+
T Consensus 135 ~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~v-l~~G~iv~~g~ 213 (363)
T TIGR01186 135 QQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVI-MKAGEIVQVGT 213 (363)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EeCCEEEeeCC
Confidence 9999999999 999999984 789999999 578899999975 99999999999
Q ss_pred ccccccCCCCCChHHHHHH
Q 019066 303 AKQIFDIPESSDPENELII 321 (346)
Q Consensus 303 ~~~l~~~~~~~~~~~~~~~ 321 (346)
+++++.+|.+++++.++..
T Consensus 214 ~~ei~~~p~~~~~~~~~~~ 232 (363)
T TIGR01186 214 PDEILRNPANEYVEEFIGK 232 (363)
T ss_pred HHHHHhCcccHHHHHHhhc
Confidence 9999999988887766543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=345.18 Aligned_cols=201 Identities=14% Similarity=0.186 Sum_probs=165.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|+++.. + |+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++.
T Consensus 334 ~I~~~~vsf~y~~~~~--i---L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-----p~~G~I~i~g~~i~--- 400 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQ--G---VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD-----PQSGRILIDGTDIR--- 400 (588)
T ss_pred eEEEEEEEEEeCCCCc--e---ecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEEhh---
Confidence 5999999999975433 3 777999999999999999999999999999999999 99999999999986
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. +...+.+...++++|++.++..++++|+.++.. ...++++.++++.+++.+++..+|+|+
T Consensus 401 ---~---------~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-------~~~d~~i~~al~~~~l~~~i~~lp~gl 461 (588)
T PRK13657 401 ---T---------VTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP-------DATDEEMRAAAERAQAHDFIERKPDGY 461 (588)
T ss_pred ---h---------CCHHHHHhheEEEecCcccccccHHHHHhcCCC-------CCCHHHHHHHHHHhCHHHHHHhCcccc
Confidence 1 122223333444555555566667777765421 122466888999999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhhcc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 284 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~~~ 284 (346)
+|.+++.| ..||||||||++||||| |||||+||+ ++|+|+||| ....+.
T Consensus 462 dt~i~~~g------~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~ 535 (588)
T PRK13657 462 DTVVGERG------RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN 535 (588)
T ss_pred cchhcCCC------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHh
Confidence 99999984 48999999999999999 999999984 799999999 455567
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||+|+ +|++|++++.|++++++..
T Consensus 536 ~D~ii-~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 536 ADRIL-VFDNGRVVESGSFDELVAR 559 (588)
T ss_pred CCEEE-EEECCEEEEeCCHHHHHHC
Confidence 99996 5999999999999998754
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=320.93 Aligned_cols=212 Identities=15% Similarity=0.195 Sum_probs=164.3
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
||+++||+++|+.+. ...+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 mi~i~~l~~~y~~~~~~~~i---l~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-----p~~G~I~~~g~~i~~~ 72 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHA---LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-----PTSGRVLVDGQDLTAL 72 (343)
T ss_pred CEEEEeEEEEeCCCCCceEE---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECCcC
Confidence 589999999997311 1225 677999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+..+ +.+|+.+ +.... .......++++.++++.++|.+
T Consensus 73 ~~-~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~-----------~~~~~-~~~~~~~~~~~~~~l~~~gL~~------- 132 (343)
T PRK11153 73 SE-KELRKARRQIGMIFQHFNLLSSRTVFDNVAL-----------PLELA-GTPKAEIKARVTELLELVGLSD------- 132 (343)
T ss_pred CH-HHHHHHhcCEEEEeCCCccCCCCcHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 10 11111244677888776655433 5555443 22111 1123445678889999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||. |+|+|++|| +
T Consensus 133 ----------~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~ 202 (343)
T PRK11153 133 ----------KADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD 202 (343)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 46889999999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+.++||++++ |++|++++.|++++++..+.++.++.++.
T Consensus 203 ~i~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 242 (343)
T PRK11153 203 VVKRICDRVAV-IDAGRLVEQGTVSEVFSHPKHPLTREFIQ 242 (343)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence 68889999975 99999999999999988876665555544
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=353.62 Aligned_cols=225 Identities=13% Similarity=0.112 Sum_probs=178.7
Q ss_pred hhhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
...+|+.++++.+++.... ....|+++||+|+|++... .+ |+|+||+|++||.++|+|+||||||||++
T Consensus 426 ~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~-~i---l~~i~l~i~~G~~vaivG~sGsGKSTL~~ 501 (694)
T TIGR01846 426 IALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP-EV---LSNLNLDIKPGEFIGIVGPSGSGKSTLTK 501 (694)
T ss_pred HHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCCCc-cc---cccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 3356677887665443211 1235999999999965432 14 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ |++|+|++||.++. + +...+.+...++|+|++.++..++++|+.++..
T Consensus 502 ll~g~~~-----p~~G~I~idg~~i~------~---------~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~----- 556 (694)
T TIGR01846 502 LLQRLYT-----PQHGQVLVDGVDLA------I---------ADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP----- 556 (694)
T ss_pred HHhcCCC-----CCCceEEECCEehh------h---------CCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC-----
Confidence 9999999 99999999999986 1 222333444455556666666777788775421
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
...++++.++++.+++.+.+.++|+||+|.|++.| .+||||||||++||||| ||||++||.
T Consensus 557 --~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g------~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 557 --GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG------ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred --CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC------CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 22356788899999999999999999999999984 48999999999999999 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++|+|+||| ......||+|+ +|++|++++.|+++++++..
T Consensus 629 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii-~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 629 EALIMRNMREICRGRTVIIIAHRLSTVRACDRII-VLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEE-EEeCCEEEEeCCHHHHHHcC
Confidence 799999999 33445599996 49999999999999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=300.98 Aligned_cols=203 Identities=16% Similarity=0.243 Sum_probs=158.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 68 (239)
T cd03296 2 SIEVRNVSKRFGDFV---A---LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-----PDSGTILFGGEDATD-- 68 (239)
T ss_pred EEEEEeEEEEECCEE---e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 489999999997632 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccC---CChHHHHHHHHHHHHHcCCCcccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRR---SDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
....++.++|++|++..+..+ +.+|+ .++...... .......+++.++++.+++.+
T Consensus 69 ----~~~~~~~i~~v~q~~~~~~~~tv~e~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 128 (239)
T cd03296 69 ----VPVQERNVGFVFQHYALFRHMTVFDNV-----------AFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW----- 128 (239)
T ss_pred ----CCccccceEEEecCCcccCCCCHHHHH-----------hhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----
Confidence 111234567777776544332 44444 332211100 012334567888999999976
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. |+|+|++||
T Consensus 129 ------------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 129 ------------LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred ------------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 45888999999999999999999 999999983 689999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+.+..+||++++ |++|++++.|++++++..+.++++..+
T Consensus 197 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 236 (239)
T cd03296 197 QEEALEVADRVVV-MNKGRIEQVGTPDEVYDHPASPFVYSF 236 (239)
T ss_pred HHHHHHhCCEEEE-EECCeEEEecCHHHHhcCCCcHHHHHH
Confidence 567889999975 999999999999998876665554443
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=303.62 Aligned_cols=212 Identities=21% Similarity=0.272 Sum_probs=161.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-----CceEEECcee
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSSV 144 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-----~G~I~~~g~~ 144 (346)
+|+++||+++|++.. + |+|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|++
T Consensus 1 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~~~~~~G~i~~~g~~ 69 (247)
T TIGR00972 1 AIEIENLNLFYGEKE---A---LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-----LVPGVRIEGKVLFDGQD 69 (247)
T ss_pred CEEEEEEEEEECCee---e---ecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----CCcCCCCceEEEECCEE
Confidence 489999999997532 4 677999999999999999999999999999999999 87 9999999998
Q ss_pred CCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 145 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 145 i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
+... .......++.++|++|+...+...+.+|+.+ +.............+++.++++.+++.+.+.
T Consensus 70 ~~~~--~~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~- 135 (247)
T TIGR00972 70 IYDK--KIDVVELRRRVGMVFQKPNPFPMSIYDNIAY-----------GPRLHGIKDKKELDEIVEESLKKAALWDEVK- 135 (247)
T ss_pred cccc--ccchHHHHhheEEEecCcccCCCCHHHHHHh-----------HHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-
Confidence 7511 0011112446778888765544225555433 2211111123445577889999999973210
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-- 278 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++||
T Consensus 136 ------------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~ 203 (247)
T TIGR00972 136 ------------DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNM 203 (247)
T ss_pred ------------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCH
Confidence 045888999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+.+..+||++++ |++|++++.|++++++..+.++.++.++
T Consensus 204 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 243 (247)
T TIGR00972 204 QQAARISDRTAF-FYDGELVEYGPTEQIFTNPKEKRTEDYI 243 (247)
T ss_pred HHHHHhCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHHh
Confidence 567889999965 9999999999999998877766554443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=371.25 Aligned_cols=227 Identities=11% Similarity=0.120 Sum_probs=177.6
Q ss_pred hhhHHHHHHhhhhhhhhc------c-----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHH
Q 019066 48 RRDAVFREVLQSYDQLRT------R-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 116 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~------~-----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKS 116 (346)
.+.+|+.++++.+++.+. + ....|+|+||+|+|+++.. .+ |+|+||+|++||.+||||+||||||
T Consensus 1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~V---L~~is~~I~~GekVaIVGrSGSGKS 1279 (1622)
T PLN03130 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP-PV---LHGLSFEISPSEKVGIVGRTGAGKS 1279 (1622)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC-ce---ecceeEEEcCCCEEEEECCCCCCHH
Confidence 445677777766554321 0 1235999999999965431 14 7779999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh
Q 019066 117 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 196 (346)
Q Consensus 117 TLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~ 196 (346)
||+++|.|+++ |++|+|++||.|+. . +...+.|...++|+|++.+|..++++|+..+.
T Consensus 1280 TLl~lL~rl~~-----p~~G~I~IDG~dI~------~---------i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-- 1337 (1622)
T PLN03130 1280 SMLNALFRIVE-----LERGRILIDGCDIS------K---------FGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-- 1337 (1622)
T ss_pred HHHHHHhCcCC-----CCCceEEECCEecc------c---------CCHHHHHhccEEECCCCccccccHHHHhCcCC--
Confidence 99999999999 99999999999987 2 22223333334444444445555666654321
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCC
Q 019066 197 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 267 (346)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 267 (346)
...++++.++++.+++.+++..+|+||+|.|+|+|. +||||||||++||||| |||||+|
T Consensus 1338 ------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~------nLSgGQrQrlaLARALLr~p~ILILDEATSaL 1405 (1622)
T PLN03130 1338 ------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGE------NFSVGQRQLLSLARALLRRSKILVLDEATAAV 1405 (1622)
T ss_pred ------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCC------CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 123567899999999999999999999999999954 9999999999999999 9999999
Q ss_pred CC---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 268 RD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 268 d~---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
|. ++|+|+|+| +.+.. ||||+| |++|+|++.|+|+++++++...+
T Consensus 1406 D~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlV-Ld~G~IvE~Gt~~eLl~~~~g~f 1467 (1622)
T PLN03130 1406 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILV-LDAGRVVEFDTPENLLSNEGSAF 1467 (1622)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEE-EECCEEEEeCCHHHHHhCCCCHH
Confidence 83 899999999 44555 999965 99999999999999998754333
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=321.33 Aligned_cols=214 Identities=14% Similarity=0.181 Sum_probs=166.6
Q ss_pred cEEEeeeEEEeCCCCc---------------------eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccC
Q 019066 70 LTDAKNKILSYTPGAW---------------------IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEN 128 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~---------------------~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~ 128 (346)
+|+++||++.|+.... ..+ |+++||+|++||+++|+||||||||||+|+|+|+++
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~- 79 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLG---VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE- 79 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEE---EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-
Confidence 5788888888865321 114 677999999999999999999999999999999999
Q ss_pred CCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHH
Q 019066 129 DKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN 207 (346)
Q Consensus 129 ~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~ 207 (346)
|++|+|+++|+++......+.....++.++|++|+...+..+ +.+|+.+ +.... .......++
T Consensus 80 ----p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~-----------~~~~~-~~~~~~~~~ 143 (400)
T PRK10070 80 ----PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF-----------GMELA-GINAEERRE 143 (400)
T ss_pred ----CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHH-----------HHHhc-CCCHHHHHH
Confidence 999999999998752111110112234677888876655443 5555443 32211 112344567
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------- 269 (346)
++.++++.++|.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 144 ~~~e~L~~~gL~~-----------------~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~ 206 (400)
T PRK10070 144 KALDALRQVGLEN-----------------YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE 206 (400)
T ss_pred HHHHHHHHcCCCh-----------------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 8889999999987 56899999999999999999999 999999984
Q ss_pred --------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 270 --------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 270 --------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
++|+|+||| +.+.++||++++ |++|++++.|++++++..|.+++++.++..
T Consensus 207 L~~l~~~~g~TIIivTHd~~~~~~~~Dri~v-L~~G~i~~~g~~~~l~~~~~~~~v~~~~~~ 267 (400)
T PRK10070 207 LVKLQAKHQRTIVFISHDLDEAMRIGDRIAI-MQNGEVVQVGTPDEILNNPANDYVRTFFRG 267 (400)
T ss_pred HHHHHHHCCCeEEEEECCHHHHHHhCCEEEE-EECCEEEecCCHHHHHhCcccHHHHHHHhc
Confidence 789999999 578889999975 999999999999999988887777777653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=371.40 Aligned_cols=225 Identities=12% Similarity=0.092 Sum_probs=177.0
Q ss_pred hhhHHHHHHhhhhhhhhc------c-----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHH
Q 019066 48 RRDAVFREVLQSYDQLRT------R-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 116 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~------~-----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKS 116 (346)
.+.+|+.++++.+++... + ....|+++||+|+|+++.. .+ |+|+||+|++||.+||||+||||||
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~-~v---L~~isl~I~~GekvaIVG~SGSGKS 1276 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP-PV---LHGLSFFVSPSEKVGVVGRTGAGKS 1276 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCC-cc---cccceEEEcCCCEEEEECCCCCCHH
Confidence 345677888766554321 0 1135999999999965421 14 7779999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCCCceEEECceeCCCccccccccc--CCCCccceeecccccccchhhchHhhHHHHHhhhhcch
Q 019066 117 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTI--PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE 194 (346)
Q Consensus 117 TLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~--~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~ 194 (346)
||+++|.|+++ |++|+|.+||.|+. .... -|+++++++|++..| ..++++|+..+.
T Consensus 1277 TL~~lL~rl~~-----p~~G~I~IdG~di~------~i~~~~lR~~i~iVpQdp~LF-----------~gTIr~NL~~~~ 1334 (1495)
T PLN03232 1277 SMLNALFRIVE-----LEKGRIMIDDCDVA------KFGLTDLRRVLSIIPQSPVLF-----------SGTVRFNIDPFS 1334 (1495)
T ss_pred HHHHHHhCCCc-----CCCceEEECCEEhh------hCCHHHHHhhcEEECCCCeee-----------CccHHHHcCCCC
Confidence 99999999999 99999999999986 2111 134455555555544 445555654321
Q ss_pred hhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------Ccccc
Q 019066 195 LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYL 265 (346)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts 265 (346)
...++++.++++.+++.+++..+|+|++|.|+|+|. +||||||||++||||| |||||
T Consensus 1335 --------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~------~LSgGQrQrlaLARALLr~~~ILILDEATS 1400 (1495)
T PLN03232 1335 --------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGE------NFSVGQRQLLSLARALLRRSKILVLDEATA 1400 (1495)
T ss_pred --------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCC------CCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 123467889999999999999999999999999954 8999999999999999 99999
Q ss_pred CCCC---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 266 SFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 266 ~Ld~---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
+||. ++|+|+||| +.+.. ||||+| |++|+|++.|+|+++++++...+
T Consensus 1401 aLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlV-L~~G~ivE~Gt~~eLl~~~~~~f 1464 (1495)
T PLN03232 1401 SVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILV-LSSGQVLEYDSPQELLSRDTSAF 1464 (1495)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEE-EECCEEEEECCHHHHHhCCCCHH
Confidence 9983 899999999 44555 999965 99999999999999998754333
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=303.23 Aligned_cols=209 Identities=20% Similarity=0.232 Sum_probs=161.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 71 (250)
T PRK11264 3 AIEVKNLVKKFHGQT---V---LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-----PEAGTIRVGDITIDTAR 71 (250)
T ss_pred cEEEeceEEEECCee---e---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccc
Confidence 699999999997532 4 677999999999999999999999999999999999 99999999999874210
Q ss_pred ccc----ccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 150 FLQ----EYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 150 ~~~----~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
... .....++.++|++|+...+... +.+|+.+.. ............+++.++++.+++.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-----------~~~~~~~~~~~~~~~~~~l~~~gl~~---- 136 (250)
T PRK11264 72 SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP-----------VIVKGEPKEEATARARELLAKVGLAG---- 136 (250)
T ss_pred cccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHH-----------HHhcCCCHHHHHHHHHHHHHHcCCcc----
Confidence 000 0011234567777776555433 555543321 10111123345567889999999986
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++||
T Consensus 137 -------------~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 137 -------------KETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred -------------hhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45888999999999999999999 999999984 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+.+..+||++++ |++|++++.|++++++..+.+++++.+
T Consensus 204 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 243 (250)
T PRK11264 204 MSFARDVADRAIF-MDQGRIVEQGPAKALFADPQQPRTRQF 243 (250)
T ss_pred HHHHHHhcCEEEE-EECCEEEEeCCHHHHhcCCCCHHHHHH
Confidence 567889999965 999999999999999887766665544
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=312.02 Aligned_cols=196 Identities=13% Similarity=0.117 Sum_probs=160.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+|+|++. .+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 5 ~~~i~i~~l~k~~~~~---~~---l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-----p~~G~v~i~G~~~~~ 73 (306)
T PRK13537 5 VAPIDFRNVEKRYGDK---LV---VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-----PDAGSISLCGEPVPS 73 (306)
T ss_pred CceEEEEeEEEEECCe---EE---EecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEeccc
Confidence 4579999999999753 25 666999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. ....++.++|++|+...+..+ +.+|+.++... . ..+..+..+++.++++.+++.+
T Consensus 74 ~-----~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~-----------~-~~~~~~~~~~~~~~l~~~~l~~------ 130 (306)
T PRK13537 74 R-----ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY-----------F-GLSAAAARALVPPLLEFAKLEN------ 130 (306)
T ss_pred c-----hHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH-----------c-CCCHHHHHHHHHHHHHHcCCch------
Confidence 1 011245678888887666544 66665543311 1 1123445667889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 131 -----------~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~ 199 (306)
T PRK13537 131 -----------KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME 199 (306)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 46888999999999999999999 999999984 899999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++.++||||++ |++|++++.|+++++...
T Consensus 200 e~~~~~d~i~i-l~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 200 EAERLCDRLCV-IEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHHHhc
Confidence 78899999975 999999999999988654
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=301.80 Aligned_cols=208 Identities=18% Similarity=0.231 Sum_probs=161.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~---i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 69 (240)
T PRK09493 1 MIEFKNVSKHFGPTQ---V---LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-----ITSGDLIVDGLKVNDPK 69 (240)
T ss_pred CEEEEeEEEEECCeE---E---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCC
Confidence 489999999997532 4 777999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
......++.++|++|+...+..+ +.+|+.+ +.............+++.++++.+++.+
T Consensus 70 --~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~-----------~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------- 128 (240)
T PRK09493 70 --VDERLIRQEAGMVFQQFYLFPHLTALENVMF-----------GPLRVRGASKEEAEKQARELLAKVGLAE-------- 128 (240)
T ss_pred --hhHHHHhhceEEEecccccCCCCcHHHHHHh-----------HHHHhcCCCHHHHHHHHHHHHHHcCChH--------
Confidence 00011234567888776554432 5555433 2110011123445567889999999986
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
.+++++.+||||||||++||||| ||||++||. ++|+|++|| +.+
T Consensus 129 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 199 (240)
T PRK09493 129 ---------RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFA 199 (240)
T ss_pred ---------HHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 45888999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+||++++ |++|++++.|+++++...+.++.+..++
T Consensus 200 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 236 (240)
T PRK09493 200 EKVASRLIF-IDKGRIAEDGDPQVLIKNPPSQRLQEFL 236 (240)
T ss_pred HHhCCEEEE-EECCEEEeeCCHHHHhcCCchHHHHHHh
Confidence 889999975 9999999999999888776665555443
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=303.68 Aligned_cols=220 Identities=17% Similarity=0.190 Sum_probs=164.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|+++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 5 EAIIETENLNLFYTDFK---A---LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred CceEEEeeeEEEeCCce---e---ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence 55899999999997532 4 67799999999999999999999999999999999811111258999999988741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . .....++.++|++|+...+...+.+|+.+ +............++++.++++.+++.+.+.
T Consensus 79 ~~-~-~~~~~~~~i~~v~q~~~~~~~tv~eni~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---- 141 (254)
T PRK14273 79 NN-F-DILELRRKIGMVFQTPNPFLMSIYDNISY-----------GPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---- 141 (254)
T ss_pred cc-c-cHHHHhhceEEEeeccccccCcHHHHHHH-----------HHHhcCCCCHHHHHHHHHHHHHHhCCchhhH----
Confidence 10 0 11112446788888765543235555443 2211111122344577888999998853210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 142 ---------~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~ 212 (254)
T PRK14273 142 ---------DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQA 212 (254)
T ss_pred ---------HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+|||+++ |++|++++.|++++++.+|.+++++.++.
T Consensus 213 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 250 (254)
T PRK14273 213 GRISDRTAF-FLNGCIEEESSTDELFFNPKNTKTEEYIS 250 (254)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHhhc
Confidence 889999975 99999999999999999988888766543
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=339.20 Aligned_cols=192 Identities=15% Similarity=0.180 Sum_probs=157.2
Q ss_pred hhHHHHHHhhhhhhhhcc----------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR----------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 118 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~----------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTL 118 (346)
..+|+.++++.+++..+. ....|+++||+|+|++.+. + |+|+||+|++||++||+||||||||||
T Consensus 303 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~--v---L~~isl~i~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 303 AAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPP--V---LDGVSLDLPPGERVAILGPSGSGKSTL 377 (529)
T ss_pred HHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCc--e---eecceEEEcCCCEEEEECCCCCCHHHH
Confidence 345677777655432110 1124999999999976543 3 777999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc
Q 019066 119 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 198 (346)
Q Consensus 119 l~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~ 198 (346)
+++|+|+++ |++|+|.+||.++. .+ ..+.+...++|+|++.++..++++||.++..
T Consensus 378 l~lL~g~~~-----p~~G~I~i~g~~i~---------------~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~--- 433 (529)
T TIGR02868 378 LMLLTGLLD-----PLQGEVTLDGVSVS---------------SL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP--- 433 (529)
T ss_pred HHHHhcCCC-----CCCcEEEECCEEhh---------------hH-HHHHHhheEEEccCcccccccHHHHHhccCC---
Confidence 999999999 99999999999987 23 4445555666677777777788888876532
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC
Q 019066 199 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 269 (346)
+..++++.++++.+++++++..+|+||+|.|||+|. .||||||||++||||| |||||+||.
T Consensus 434 ----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~------~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~ 503 (529)
T TIGR02868 434 ----DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGA------RLSGGERQRLALARALLADAPILLLDEPTEHLDA 503 (529)
T ss_pred ----CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccC------cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 234567889999999999999999999999999965 8999999999999999 999999984
Q ss_pred ---------------CceEEEEech
Q 019066 270 ---------------DKPVVVVTHG 279 (346)
Q Consensus 270 ---------------g~tviiiTH~ 279 (346)
++|+|+|||+
T Consensus 504 ~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 504 GTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecC
Confidence 7999999994
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=308.15 Aligned_cols=201 Identities=14% Similarity=0.201 Sum_probs=156.2
Q ss_pred EEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||++.|++... ..+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|.++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 74 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKA---LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-----PTSGKIIIDGVDITDK 74 (287)
T ss_pred EEEEEEEEECCCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCccEEEECCEECCCc
Confidence 899999999975310 124 777999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC--ccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~ 226 (346)
. ......++.++|++|++.. .++..++.+|+.++.... .....+..+++.++++.+||. +
T Consensus 75 ~--~~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~------ 136 (287)
T PRK13637 75 K--VKLSDIRKKVGLVFQYPEY---------QLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYED------ 136 (287)
T ss_pred C--ccHHHHhhceEEEecCchh---------ccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchh------
Confidence 0 0001113456777776421 122235556665543322 223455667889999999997 3
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
+.++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 137 -----------~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 205 (287)
T PRK13637 137 -----------YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM 205 (287)
T ss_pred -----------hccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 46889999999999999999999 999999984 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+..+||||++ |++|++++.|++++++..
T Consensus 206 ~~~~~~~drv~~-l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 206 EDVAKLADRIIV-MNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 567789999975 999999999999988764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=305.86 Aligned_cols=196 Identities=15% Similarity=0.232 Sum_probs=152.6
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~~--~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 72 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTK--A---LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-----PQRGRVKVMGREVNAE 72 (274)
T ss_pred ceEEEEEEEEEeCCCCe--e---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 37999999999964333 4 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. . ...++.++|++|++.. .++..++.+|+.++.... .......++++.++++.+++.+
T Consensus 73 ~---~-~~~~~~i~~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~-------- 130 (274)
T PRK13647 73 N---E-KWVRSKVGLVFQDPDD---------QVFSSTVWDDVAFGPVNM-GLDKDEVERRVEEALKAVRMWD-------- 130 (274)
T ss_pred C---H-HHHHhhEEEEecChhh---------hhccCcHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH--------
Confidence 0 0 1112346677766421 112224555555443211 1223445677889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|||++|| +.+
T Consensus 131 ---------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~ 201 (274)
T PRK13647 131 ---------FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA 201 (274)
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 56889999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCcccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
.++|||+++ |++|++++.|+++++
T Consensus 202 ~~~~d~i~~-l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 202 AEWADQVIV-LKEGRVLAEGDKSLL 225 (274)
T ss_pred HHhCCEEEE-EECCEEEEECCHHHh
Confidence 789999975 999999999998643
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=311.98 Aligned_cols=208 Identities=18% Similarity=0.217 Sum_probs=158.7
Q ss_pred CCcEEEeeeEEEeCCCC--ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 68 GSLTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~--~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.++|+++||++.|++.. ...+ |+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|.++
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-----p~~G~I~i~g~~~ 90 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVA---LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-----SKYGTIQVGDIYI 90 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCEEc
Confidence 46899999999997532 1124 777999999999999999999999999999999999 9999999999987
Q ss_pred CCccc----------c--cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHH
Q 019066 146 DGTYF----------L--QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKA 213 (346)
Q Consensus 146 ~~~~~----------~--~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l 213 (346)
..... . ......++.++|++|++.. .++..++.+|+.++.... ..+.....+++.+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~---------~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l 160 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEY---------QLFKDTIEKDIMFGPVAL-GVKKSEAKKLAKFYL 160 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchh---------ccccchHHHHHHhhHHhc-CCCHHHHHHHHHHHH
Confidence 42100 0 0001113345666665410 233346666666654321 123445567888999
Q ss_pred HHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------
Q 019066 214 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------------- 269 (346)
Q Consensus 214 ~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------------- 269 (346)
+.+++... ..++.+.+||||||||++||||| ||||++||.
T Consensus 161 ~~~gL~~~----------------~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~ 224 (320)
T PRK13631 161 NKMGLDDS----------------YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA 224 (320)
T ss_pred HHcCCChh----------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 99999631 45888999999999999999999 999999984
Q ss_pred -CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
|.|||+||| +.+..+|||+++ |++|++++.|++++++..+
T Consensus 225 ~g~TiiivtHd~~~~~~~adri~v-l~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 225 NNKTVFVITHTMEHVLEVADEVIV-MDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred CCCEEEEEecCHHHHHHhCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 789999999 467789999975 9999999999999887654
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=307.51 Aligned_cols=205 Identities=18% Similarity=0.204 Sum_probs=156.9
Q ss_pred cEEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
||+++||+++|+.+.. ..+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRA---LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-----PTEGKVTVGDIVVSS 72 (288)
T ss_pred CEEEEEEEEEeCCCCcccccc---eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 5899999999974321 124 677999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
..........++.++|++|++.. .++..++.+|+.++....+ .+..+.++++.++++.++|.+.
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~------ 136 (288)
T PRK13643 73 TSKQKEIKPVRKKVGVVFQFPES---------QLFEETVLKDVAFGPQNFG-IPKEKAEKIAAEKLEMVGLADE------ 136 (288)
T ss_pred ccccccHHHHHhhEEEEecCcch---------hcccchHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCChh------
Confidence 10000011123355666665410 2223355666665543221 2345566788999999999632
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
+.++.+.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 137 ----------~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~ 206 (288)
T PRK13643 137 ----------FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206 (288)
T ss_pred ----------hccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 35888999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+..+||||++ |++|++++.|++++++..
T Consensus 207 ~~~~~dri~~-l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 207 VADYADYVYL-LEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHcC
Confidence 7889999965 999999999999998764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=280.41 Aligned_cols=195 Identities=16% Similarity=0.163 Sum_probs=160.1
Q ss_pred CcEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+|+++++++..+... .+++ |++|+|.|++||.++||||||||||||+-+++|+.+ |++|+|.+.|+++..
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~I---L~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-----~ssGeV~l~G~~L~~ 76 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSI---LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-----PSSGEVRLLGQPLHK 76 (228)
T ss_pred ceeehhhhhhhhcCCCcceeE---eecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-----CCCceEEEcCcchhh
Confidence 3799999999987653 2456 566999999999999999999999999999999999 999999999999875
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
...-....++.++++|+||.+.+.+.+ +..+|+..++...+. ........+.++|+.+||..
T Consensus 77 ldEd~rA~~R~~~vGfVFQSF~Lip~l----------tAlENV~lPleL~ge-~~~~~~~~A~~lL~~vGLg~------- 138 (228)
T COG4181 77 LDEDARAALRARHVGFVFQSFHLIPNL----------TALENVALPLELRGE-SSADSRAGAKALLEAVGLGK------- 138 (228)
T ss_pred cCHHHHHHhhccceeEEEEeeeccccc----------hhhhhccchhhhcCC-ccccHHHHHHHHHHHhCccc-------
Confidence 544444556677888988887766444 445666666554332 23445677899999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~~ 280 (346)
.++.||.+|||||||||+||||+ ||||-+||. |.|+++||| ..
T Consensus 139 ----------Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~ 208 (228)
T COG4181 139 ----------RLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ 208 (228)
T ss_pred ----------ccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH
Confidence 56999999999999999999999 999999984 999999999 45
Q ss_pred hhccccEEEEEecCCeEeec
Q 019066 281 LLSLTDRARIRTYLGELLGI 300 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~ 300 (346)
++.-|+|++ .|.+|+|+++
T Consensus 209 LA~Rc~R~~-r~~~G~l~~~ 227 (228)
T COG4181 209 LAARCDRQL-RLRSGRLVED 227 (228)
T ss_pred HHHhhhhee-eeecceeccC
Confidence 555699994 7999999864
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=298.25 Aligned_cols=203 Identities=12% Similarity=0.119 Sum_probs=158.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~~ 71 (241)
T PRK14250 3 EIEFKEVSYSSFGKE---I---LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-----PTEGSILIDGVDIKTID 71 (241)
T ss_pred eEEEEeEEEEeCCee---e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhcC
Confidence 589999999997533 3 777999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+.. ++..++.+|+.++.... ....+++.++++.+++.+.
T Consensus 72 ----~~~~~~~i~~~~q~~~-----------~~~~tv~e~l~~~~~~~-----~~~~~~~~~~l~~~~l~~~-------- 123 (241)
T PRK14250 72 ----VIDLRRKIGMVFQQPH-----------LFEGTVKDNIEYGPMLK-----GEKNVDVEYYLSIVGLNKE-------- 123 (241)
T ss_pred ----hHHhhhcEEEEecCch-----------hchhhHHHHHhcchhhc-----CcHHHHHHHHHHHcCCCHH--------
Confidence 0011234556666543 33345666665543211 1123567889999999632
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 124 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~ 195 (241)
T PRK14250 124 --------YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQA 195 (241)
T ss_pred --------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH
Confidence 35788999999999999999999 999999883 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |++|++++.|++++++..+.+++++.++.
T Consensus 196 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (241)
T PRK14250 196 KRIGDYTAF-LNKGILVEYAKTYDFFTNPQNEVTKLFIQ 233 (241)
T ss_pred HHhCCEEEE-EeCCEEEEeCCHHHHhcCCCcHHHHHHHh
Confidence 889999964 99999999999999988777666555443
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=305.98 Aligned_cols=205 Identities=15% Similarity=0.169 Sum_probs=157.2
Q ss_pred EEEeeeEEEeCCCC--ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~--~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||+++|++.. ...+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRA---LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-----PTSGTVTIGERVITAG 74 (290)
T ss_pred EEEEEEEEEECCCCcccccc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 89999999996421 0124 777999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.........++.++|++|++.. .++..++.+|+.++.... .......++++.++++.++|.+.
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------- 137 (290)
T PRK13634 75 KKNKKLKPLRKKVGIVFQFPEH---------QLFEETVEKDICFGPMNF-GVSEEDAKQKAREMIELVGLPEE------- 137 (290)
T ss_pred cccchHHHHHhhEEEEeeCchh---------hhhhhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCChh-------
Confidence 0000011113345666665421 223346667776654322 12344556788999999999742
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 138 ---------~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~ 208 (290)
T PRK13634 138 ---------LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208 (290)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 35888999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+..+||||++ |++|++++.|++++++..+
T Consensus 209 ~~~~~drv~~-l~~G~i~~~g~~~~~~~~~ 237 (290)
T PRK13634 209 AARYADQIVV-MHKGTVFLQGTPREIFADP 237 (290)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHhcCH
Confidence 8889999965 9999999999999887654
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=340.67 Aligned_cols=224 Identities=13% Similarity=0.117 Sum_probs=173.3
Q ss_pred hhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
...|+.++++.+++.... ....|+++|++|+|+..+. .+ |+++||+|++|++++|+||||||||||+++|
T Consensus 286 a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~y~~~~~-~~---l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll 361 (569)
T PRK10789 286 AYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFTYPQTDH-PA---LENVNFTLKPGQMLGICGPTGSGKSTLLSLI 361 (569)
T ss_pred HHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEECCCCCC-cc---ccCeeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 345677777655432111 1235999999999975421 14 6679999999999999999999999999999
Q ss_pred hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCCh
Q 019066 123 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 202 (346)
Q Consensus 123 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~ 202 (346)
+|+++ |++|+|.++|+++.. +...+.+...++++|++.++..++++|+.++..
T Consensus 362 ~g~~~-----p~~G~i~~~g~~~~~---------------~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~------- 414 (569)
T PRK10789 362 QRHFD-----VSEGDIRFHDIPLTK---------------LQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP------- 414 (569)
T ss_pred hcccC-----CCCCEEEECCEEHhh---------------CCHHHHHhheEEEccCCeeccccHHHHHhcCCC-------
Confidence 99999 999999999998751 111122223334444445555566777765421
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
...++++.++++.+++.+++..+|+|++|.+|+.+ ..||||||||++||||| ||||++||.
T Consensus 415 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g------~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~ 488 (569)
T PRK10789 415 DATQQEIEHVARLASVHDDILRLPQGYDTEVGERG------VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEH 488 (569)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCC------CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence 12345677889999999999999999999999984 48999999999999999 999999984
Q ss_pred -----------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 -----------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -----------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++|+|+||| ......||+|+ +|++|++++.|++++++++.
T Consensus 489 ~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 489 QILHNLRQWGEGRTVIISAHRLSALTEASEIL-VMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHHHHHhCCCEEEEEecchhHHHcCCEEE-EEeCCEEEEecCHHHHHHcC
Confidence 799999999 34445699996 49999999999999998653
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=299.69 Aligned_cols=219 Identities=16% Similarity=0.203 Sum_probs=162.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.|+|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~~~~~~---i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 77 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQ---A---LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYD 77 (253)
T ss_pred CcEEEEeeeEEEECCee---e---ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccc
Confidence 56899999999997532 4 77799999999999999999999999999999996311111479999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+...+.+|+ .++............++++.++++.+++.+.+.
T Consensus 78 ~~--~~~~~~~~~i~~v~q~~~~~~~tv~enl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 140 (253)
T PRK14242 78 PH--VDVVELRRRVGMVFQKPNPFPKSIFENV-----------AYGLRVNGVKDKAYLAERVERSLRHAALWDEVK---- 140 (253)
T ss_pred cc--cCHHHHhhcEEEEecCCCCCcCcHHHHH-----------HHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh----
Confidence 00 0111123457788877654433344444 332211111122344577888999999864220
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 141 ---------~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~ 211 (253)
T PRK14242 141 ---------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQA 211 (253)
T ss_pred ---------HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHH
Confidence 135788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
.++||++++ |++|++++.|++++++..+.+.+++.++
T Consensus 212 ~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 248 (253)
T PRK14242 212 ARVSDVTAF-FYMGKLIEVGPTEQIFTRPREKQTEDYI 248 (253)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHcCCCchHHHHHh
Confidence 889999965 9999999999999998887776665543
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=298.85 Aligned_cols=205 Identities=19% Similarity=0.239 Sum_probs=154.3
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++. . + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~-~--~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~- 68 (236)
T cd03219 1 LEVRGLTKRFGGL-V--A---LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-----PTSGSVLFDGEDITGLP- 68 (236)
T ss_pred CeeeeeEEEECCE-E--E---ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEECCCCC-
Confidence 5789999999753 2 4 666999999999999999999999999999999999 99999999999875110
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhh-ccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELV-IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....+..++|++|+...+.++ +.+|+.+..... ... .... ..........+++.++++.+++.+
T Consensus 69 --~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 135 (236)
T cd03219 69 --PHEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR-TGS--GLLLARARREEREARERAEELLERVGLAD-------- 135 (236)
T ss_pred --HHHHHhcCEEEEecccccccCCCHHHHHHHHHhhc-ccc--ccccccccccHHHHHHHHHHHHHHcCccc--------
Confidence 0111233567777776655543 555554332100 000 0000 000012344567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |+|+|++|| +.+
T Consensus 136 ---------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~ 206 (236)
T cd03219 136 ---------LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVV 206 (236)
T ss_pred ---------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 45888999999999999999999 999999984 789999999 577
Q ss_pred hccccEEEEEecCCeEeecCCccccccCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
..+||++++ |++|++++.|++++++..+
T Consensus 207 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~ 234 (236)
T cd03219 207 MSLADRVTV-LDQGRVIAEGTPDEVRNNP 234 (236)
T ss_pred HHhCCEEEE-EeCCEEEeecCHHHhccCC
Confidence 889999965 9999999999998886643
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=309.61 Aligned_cols=206 Identities=13% Similarity=0.171 Sum_probs=157.7
Q ss_pred cEEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+|+++||+++|+++.. ..+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~~~~ 73 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKA---LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-----PDTGTIEWIFKDEKN 73 (305)
T ss_pred EEEEEEEEEEECCCCCccccc---eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEEeceeccc
Confidence 3899999999975321 124 777999999999999999999999999999999999 999999999877531
Q ss_pred ccc-------------c-------cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHH
Q 019066 148 TYF-------------L-------QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRN 207 (346)
Q Consensus 148 ~~~-------------~-------~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~ 207 (346)
... . ......++.++|++|++. ..++..++.+|+.++.... .....+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~---------~~l~~~tv~e~i~~~~~~~-~~~~~~~~~ 143 (305)
T PRK13651 74 KKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAE---------YQLFEQTIEKDIIFGPVSM-GVSKEEAKK 143 (305)
T ss_pred ccccccccccccccccccccccccchHHHHHhceEEEeeCcc---------cccccccHHHHHHhhHHHc-CCCHHHHHH
Confidence 100 0 000011234455555431 1233346677776654322 233456677
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------- 269 (346)
++.++++.+||... .+++++.+||||||||++||||| ||||++||.
T Consensus 144 ~~~~~l~~~gL~~~----------------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~ 207 (305)
T PRK13651 144 RAAKYIELVGLDES----------------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI 207 (305)
T ss_pred HHHHHHHHcCCChh----------------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 89999999999632 46889999999999999999999 999999984
Q ss_pred -------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 -------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
|.|||+||| +.+.++||||++ |++|++++.|++++++..+
T Consensus 208 l~~l~~~g~tiiivtHd~~~~~~~adrv~v-l~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 208 FDNLNKQGKTIILVTHDLDNVLEWTKRTIF-FKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred HHHHHHCCCEEEEEeeCHHHHHHhCCEEEE-EECCEEEEECCHHHHhcCH
Confidence 899999999 568899999975 9999999999999988663
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=304.18 Aligned_cols=202 Identities=17% Similarity=0.207 Sum_probs=157.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+++|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 73 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRC---I---FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-----PDHGEILFDGENIPA 73 (269)
T ss_pred cceEEEeCeEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEccc
Confidence 45799999999997532 4 777999999999999999999999999999999999 999999999998742
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.. .......++.++|++|+...+..+ +.+|+.+. .......+....++++.++++.+++.+
T Consensus 74 ~~-~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~-----------~~~~~~~~~~~~~~~~~~~l~~~gl~~------ 135 (269)
T PRK11831 74 MS-RSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP-----------LREHTQLPAPLLHSTVMMKLEAVGLRG------ 135 (269)
T ss_pred cC-hhhHHHHhhcEEEEecccccCCCCCHHHHHHHH-----------HHHccCCCHHHHHHHHHHHHHHcCChh------
Confidence 11 000111134567888876655443 55554432 111101123334567888999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|+|||
T Consensus 136 -----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 136 -----------AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 46888999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+.+.++||++++ |++|++++.|++++++..+
T Consensus 205 ~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 205 PEVLSIADHAYI-VADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHHHHhhCEEEE-EECCEEEEeCCHHHHhcCC
Confidence 568889999965 9999999999999987654
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=315.67 Aligned_cols=194 Identities=16% Similarity=0.188 Sum_probs=153.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee----CCCcccccccccCCCCccceeec
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----GDGTYFLQEYTIPRGSNSFSLYD 167 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~----i~~~~~~~~~~~~r~~i~~~~~d 167 (346)
|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|++ +......+.....++.++|++|+
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-----p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-----VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 677999999999999999999999999999999999 999999999973 32110001111223467777777
Q ss_pred ccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCC
Q 019066 168 TRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 246 (346)
Q Consensus 168 ~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~L 246 (346)
...+..+ +.+|+ .++.... ..+..+.++++.++++.+||.+ ..++++.+|
T Consensus 115 ~~l~p~~Tv~eNi-----------~~~~~~~-g~~~~~~~~~a~e~le~vgL~~-----------------~~~~~~~~L 165 (382)
T TIGR03415 115 FALMPWLTVEENV-----------AFGLEMQ-GMPEAERRKRVDEQLELVGLAQ-----------------WADKKPGEL 165 (382)
T ss_pred CcCCCCCcHHHHH-----------HHHHHhc-CCCHHHHHHHHHHHHHHcCCch-----------------hhcCChhhC
Confidence 6655433 55554 4332211 1223455678899999999987 568999999
Q ss_pred CHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEe
Q 019066 247 DVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELL 298 (346)
Q Consensus 247 SgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv 298 (346)
|||||||++||||| ||||++||+ ++|+|+||| +++.++||||++ |++|+++
T Consensus 166 SgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~v-l~~G~iv 244 (382)
T TIGR03415 166 SGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAI-MEGGRII 244 (382)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEE
Confidence 99999999999999 999999984 789999999 578899999975 9999999
Q ss_pred ecCCccccccCCCCCChHHHHH
Q 019066 299 GIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 299 ~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+.|++++++.+|...+++.++.
T Consensus 245 ~~g~~~ei~~~p~~~~~~~~~~ 266 (382)
T TIGR03415 245 QHGTPEEIVLNPANDYVADFVA 266 (382)
T ss_pred EecCHHHHhhCcchHHHHHHhc
Confidence 9999999998888777777665
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=294.80 Aligned_cols=194 Identities=19% Similarity=0.206 Sum_probs=146.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc-----cCCCCCCCCceEEECceeC
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF-----ENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~-----~~~~~~p~~G~I~~~g~~i 145 (346)
|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|+++
T Consensus 1 i~~~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-----~~~G~i~~~g~~~ 69 (227)
T cd03260 1 IELRDLNVYYGDKH---A---LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-----PDEGEVLLDGKDI 69 (227)
T ss_pred CEEEEEEEEcCCce---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-----CCCeEEEECCEEh
Confidence 57999999997643 3 77799999999999999999999999999999999 7 9999999999987
Q ss_pred CCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.... ......++.++|++|+...+ ..++.+|+.++............++++.++++.+++.+
T Consensus 70 ~~~~--~~~~~~~~~i~~~~q~~~~~-----------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 131 (227)
T cd03260 70 YDLD--VDVLELRRRVGMVFQKPNPF-----------PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD----- 131 (227)
T ss_pred hhcc--hHHHHHHhhEEEEecCchhc-----------cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-----
Confidence 4110 00111133556666664433 22455555443221111112234577889999999986
Q ss_pred cceeeeeechhhhcccC--CCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSM--EGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~--~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH- 278 (346)
..++. +.+||||||||++||||| ||||++||. ..|+|++||
T Consensus 132 ------------~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~ 199 (227)
T cd03260 132 ------------EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199 (227)
T ss_pred ------------HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEecc
Confidence 23454 599999999999999999 999999984 479999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+.+..+||++++ |++|++++.|+++++
T Consensus 200 ~~~~~~~~d~i~~-l~~G~i~~~g~~~~~ 227 (227)
T cd03260 200 MQQAARVADRTAF-LLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHhCCEEEE-EeCCEEEEecCcccC
Confidence 567889999965 999999999987654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=310.26 Aligned_cols=221 Identities=14% Similarity=0.156 Sum_probs=163.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++|++++|.++.. .+ |+|+||+|++||++||+||||||||||+++|+|+++.....|++|+|.++|+++..
T Consensus 78 ~~~i~~~nls~~y~~~~~-~~---L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTK-HV---LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CceEEEEeeEEEecCCCc-ee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 458999999999964321 14 77799999999999999999999999999999998621112579999999999851
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|++..+.+.+.+|+ .++.......+....++.+.++++.+++.+.+
T Consensus 154 ~~--~~~~~lr~~i~~v~q~~~~~~~ti~eNi-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l----- 215 (329)
T PRK14257 154 KK--ISSLELRTRIGMVFQKPTPFEMSIFDNV-----------AYGPRNNGINDRKILEKIVEKSLKSAALWDEV----- 215 (329)
T ss_pred cc--cchHhhhccEEEEecCCccCCCcHHHHH-----------HhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-----
Confidence 00 0001124456777777655544444444 43322111111222345577889999886432
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
++ ..++++.+||||||||++||||| ||||++||. ++|+|+||| +.+
T Consensus 216 --~~------~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i 287 (329)
T PRK14257 216 --KD------DLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQA 287 (329)
T ss_pred --hh------hhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11 24667889999999999999999 999999984 799999999 568
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
.++||||++ |++|+|++.|++++++.+|.++.++.++
T Consensus 288 ~~~~Driiv-l~~G~i~e~g~~~~l~~~~~~~~~~~~~ 324 (329)
T PRK14257 288 QRISDETVF-FYQGWIEEAGETKTIFIHPKNKRTKDYI 324 (329)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcCCCcHHHHHHh
Confidence 889999965 9999999999999999999887766655
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=304.17 Aligned_cols=204 Identities=13% Similarity=0.181 Sum_probs=156.3
Q ss_pred EEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||+++|+++.. ..+ |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~~~g~~i~~~ 74 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQA---IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-----PTTGTVTVDDITITHK 74 (286)
T ss_pred EEEEEEEEEECCCCccccCc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECccc
Confidence 899999999964320 124 777999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.........++.++|++|++.. .++..++.+|+.++.... ........+++.++++.+||...
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~---------~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------- 137 (286)
T PRK13646 75 TKDKYIRPVRKRIGMVFQFPES---------QLFEDTVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRD------- 137 (286)
T ss_pred cccchHHHHHhheEEEecChHh---------ccchhhHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChh-------
Confidence 0000011123345666665310 123346667776654321 12344566788999999999721
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++++.+||||||||++||||| ||||++||. |.|||+||| +.
T Consensus 138 ---------~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~ 208 (286)
T PRK13646 138 ---------VMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE 208 (286)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 35788999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+..+|||+++ |++|++++.|++++++..
T Consensus 209 ~~~~~dri~~-l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 209 VARYADEVIV-MKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 7889999975 999999999999888765
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=300.10 Aligned_cols=209 Identities=15% Similarity=0.157 Sum_probs=160.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc-
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY- 149 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~- 149 (346)
|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 i~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~~ 69 (252)
T TIGR03005 1 VRFSDVTKRFGILT---V---LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-----IDEGQIQVEGEQLYHMPG 69 (252)
T ss_pred CEEEEEEEEeCCee---E---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccccc
Confidence 57999999997532 4 777999999999999999999999999999999999 99999999999874110
Q ss_pred ------c--ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 150 ------F--LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 150 ------~--~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
. .......++.+++++|+...+... +.+|+.+ +............++++.++++.+++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 138 (252)
T TIGR03005 70 RNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTE-----------APVLVLGMARAEAEKRAMELLDMVGLAD 138 (252)
T ss_pred ccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHH-----------HHHHhcCCCHHHHHHHHHHHHHHcCChh
Confidence 0 000011134567777776554332 5555433 2110001123445567889999999987
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 274 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvi 274 (346)
..++.+.+|||||+||++||||| ||||++||. |.|+|
T Consensus 139 -----------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 201 (252)
T TIGR03005 139 -----------------KADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML 201 (252)
T ss_pred -----------------HhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 45888999999999999999999 999999983 78999
Q ss_pred EEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 275 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 275 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
++|| +.+..+|||+++ |++|++++.|++++++..+.+++++.++
T Consensus 202 ivsH~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 247 (252)
T TIGR03005 202 LVTHEMGFAREFADRVCF-FDKGRIVEQGKPDEIFRQPKEERTREFL 247 (252)
T ss_pred EEeCCHHHHHHhcCEEEE-EECCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence 9999 567789999975 9999999999999998888877766654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=311.67 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=160.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 39 ~~~i~i~nl~k~y~~~~---~---l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-----p~~G~i~i~G~~~~~ 107 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKA---V---VNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-----PDAGKITVLGVPVPA 107 (340)
T ss_pred ceeEEEEEEEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCceEEEECCEECCc
Confidence 45799999999997632 4 677999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.....++.++|++|+...+..+ +.+|+.++... . ........+++.++++.++|.+
T Consensus 108 -----~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~-----------~-~~~~~~~~~~~~~ll~~~~L~~------ 164 (340)
T PRK13536 108 -----RARLARARIGVVPQFDNLDLEFTVRENLLVFGRY-----------F-GMSTREIEAVIPSLLEFARLES------ 164 (340)
T ss_pred -----chHHHhccEEEEeCCccCCCCCcHHHHHHHHHHH-----------c-CCCHHHHHHHHHHHHHHcCCch------
Confidence 1112245678888887665554 66666543211 0 1122345567788999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||+ |.|||++|| +
T Consensus 165 -----------~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~ 233 (340)
T PRK13536 165 -----------KADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 233 (340)
T ss_pred -----------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 56888999999999999999999 999999984 899999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++.++||||++ |++|+++..|+++++...
T Consensus 234 e~~~~~d~i~i-l~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 234 EAERLCDRLCV-LEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhh
Confidence 78899999975 999999999999988654
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=303.24 Aligned_cols=200 Identities=16% Similarity=0.216 Sum_probs=155.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~ 74 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYT---LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-----AESGQIIIDGDLLTEE 74 (279)
T ss_pred ceEEEEeEEEEcCCCCcCee---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECCcC
Confidence 36999999999974321124 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. ... .++.++|++|++. .+. ..++.+|+.++.... ........+++.++++.++|.+
T Consensus 75 ~---~~~-~~~~i~~v~q~~~~~~~----------~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------- 132 (279)
T PRK13650 75 N---VWD-IRHKIGMVFQNPDNQFV----------GATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQD------- 132 (279)
T ss_pred c---HHH-HHhhceEEEcChHHhcc----------cccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHh-------
Confidence 0 001 1234566666542 221 225556655543221 1234455678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||. |+|||++|| +
T Consensus 133 ----------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~ 202 (279)
T PRK13650 133 ----------FKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD 202 (279)
T ss_pred ----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 46889999999999999999999 999999983 789999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
.+ .+|||+++ |++|++++.|++++++..+
T Consensus 203 ~~-~~~dri~~-l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 203 EV-ALSDRVLV-MKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HH-HhCCEEEE-EECCEEEEECCHHHHHcCh
Confidence 55 57999965 9999999999999887664
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=300.56 Aligned_cols=219 Identities=19% Similarity=0.223 Sum_probs=163.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++.. + |+|+||+|++||+++|+|+||||||||+++|+|++++....|++|+|.++|+++..
T Consensus 10 ~~~l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQ---A---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEEEeCCee---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 56899999999997532 4 77799999999999999999999999999999999711101279999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+...+.+|+. ++.... .......++++.++++.+++.....
T Consensus 84 ~~--~~~~~~~~~i~~v~q~~~~~~~tv~enl~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~---- 145 (258)
T PRK14268 84 PD--VDVVELRKNVGMVFQKPNPFPMSIYDNVA-----------YGPRIH-GANKKDLDGVVENALRSAALWDETS---- 145 (258)
T ss_pred cc--chHHHHhhhEEEEecCCccCcccHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCCCcchh----
Confidence 00 00111234567777776544323455543 322111 1122344567888999999853110
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+|||||+||++||||| ||||++||. ++|+|++|| +.+
T Consensus 146 ---------~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~ 216 (258)
T PRK14268 146 ---------DRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQA 216 (258)
T ss_pred ---------hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHH
Confidence 035788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.++|||+++ |++|++++.|++++++.++.+++++.++.
T Consensus 217 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 254 (258)
T PRK14268 217 ARISDYTGF-FLMGELIEFGQTRQIFHNPREKSTEDYIT 254 (258)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcCCCCHHHHHHhh
Confidence 889999975 99999999999999998888877766543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=365.79 Aligned_cols=222 Identities=12% Similarity=0.046 Sum_probs=175.1
Q ss_pred hhhHHHHHHhhhhhhhh---cc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHH
Q 019066 48 RRDAVFREVLQSYDQLR---TR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKS 116 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~---~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKS 116 (346)
.+.+|+.++++.+++.. +. ....|+|+||+++|+++.. .+ |+||||+|++||++||||+||||||
T Consensus 1251 ~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~-~v---L~~is~~I~~GekiaIVGrTGsGKS 1326 (1522)
T TIGR00957 1251 VAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLD-LV---LRHINVTIHGGEKVGIVGRTGAGKS 1326 (1522)
T ss_pred HHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCc-cc---ccceeEEEcCCCEEEEECCCCCCHH
Confidence 44567778776554432 10 1235999999999976432 14 6779999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh
Q 019066 117 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV 196 (346)
Q Consensus 117 TLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~ 196 (346)
||+++|.|+++ |++|+|.+||.|+. . +..++.|...++|+|++.+|..++++|+...
T Consensus 1327 TL~~lL~rl~~-----~~~G~I~IdG~dI~------~---------i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--- 1383 (1522)
T TIGR00957 1327 SLTLGLFRINE-----SAEGEIIIDGLNIA------K---------IGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--- 1383 (1522)
T ss_pred HHHHHHhcCcc-----CCCCeEEECCEEcc------c---------cCHHHHHhcCeEECCCCcccCccHHHHcCcc---
Confidence 99999999999 99999999999997 2 2233334444444555555555566665410
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCC
Q 019066 197 IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSF 267 (346)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~L 267 (346)
....++++.++++.+++.+++..+|+||||.|+|+|. +||||||||++||||| |||||+|
T Consensus 1384 -----~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~------~LSgGQrQrl~LARALLr~~~ILiLDEaTSal 1452 (1522)
T TIGR00957 1384 -----SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGE------NLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452 (1522)
T ss_pred -----cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCC------cCCHHHHHHHHHHHHHHcCCCEEEEECCcccC
Confidence 0123466889999999999999999999999999854 8999999999999999 9999999
Q ss_pred CC---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 268 RD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 268 d~---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|. ++|+|+||| +.+. .||||+| |++|+|++.|+|++++++
T Consensus 1453 D~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~-~~DrIlV-ld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1453 DLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM-DYTRVIV-LDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEE-EECCEEEEECCHHHHHhC
Confidence 84 899999999 3454 4999965 999999999999999876
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=296.65 Aligned_cols=201 Identities=15% Similarity=0.167 Sum_probs=154.1
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
||+++|++++|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTA---LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-----PTSGSVLVDGTDLTLL 72 (233)
T ss_pred CeEEecceEEccCCCCceee---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccC
Confidence 489999999997541 0024 677999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+..+ +.+|+.+ +.... ........+++.++++.+++.+
T Consensus 73 ~-~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 132 (233)
T cd03258 73 S-GKELRKARRRIGMIFQHFNLLSSRTVFENVAL-----------PLEIA-GVPKAEIEERVLELLELVGLED------- 132 (233)
T ss_pred C-HHHHHHHHhheEEEccCcccCCCCcHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHHCCChh-------
Confidence 0 000001134567777776555433 5555433 21111 1122344567889999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+|||||+||++||||| ||||++||. |+|+|++|| +
T Consensus 133 ----------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~ 202 (233)
T cd03258 133 ----------KADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME 202 (233)
T ss_pred ----------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45888999999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+..+||++++ |++|++++.|+++++...
T Consensus 203 ~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 203 VVKRICDRVAV-MEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HHHHhCCEEEE-EECCEEEEecCHHHHhcC
Confidence 67889999965 999999999998877654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=293.68 Aligned_cols=190 Identities=13% Similarity=0.171 Sum_probs=149.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~-- 67 (220)
T cd03265 1 IEVENLVKKYGDFE---A---VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-----PTSGRATVAGHDVVRE-- 67 (220)
T ss_pred CEEEEEEEEECCEE---e---eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEecCcC--
Confidence 57999999997532 4 777999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ...++.++|++|+...+..+ +.+|+. +..... .......++++.++++.+++.+
T Consensus 68 --~-~~~~~~i~~~~q~~~~~~~~tv~~~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 123 (220)
T cd03265 68 --P-REVRRRIGIVFQDLSVDDELTGWENLY-----------IHARLY-GVPGAERRERIDELLDFVGLLE--------- 123 (220)
T ss_pred --h-HHHhhcEEEecCCccccccCcHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 0 11133567777776544433 444443 322111 1123345667899999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 124 --------~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~ 195 (220)
T cd03265 124 --------AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEA 195 (220)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 46888999999999999999999 999999984 689999999 578
Q ss_pred hccccEEEEEecCCeEeecCCcccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
..+|||+++ |++|++++.|+++++
T Consensus 196 ~~~~d~i~~-l~~G~i~~~~~~~~~ 219 (220)
T cd03265 196 EQLCDRVAI-IDHGRIIAEGTPEEL 219 (220)
T ss_pred HHhCCEEEE-EeCCEEEEeCChHHc
Confidence 889999965 999999999877653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=336.83 Aligned_cols=223 Identities=15% Similarity=0.142 Sum_probs=170.6
Q ss_pred hhhHHHHHHhhhhhhhhcc-----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
...+|+.++++.+++.... ....++++|++|+|+++.. .+ |+|+||+|++||+++|+||||||||||+++|
T Consensus 289 ~~~~ri~~~l~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~-~~---l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll 364 (544)
T TIGR01842 289 QAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKK-PT---LRGISFRLQAGEALAIIGPSGSGKSTLARLI 364 (544)
T ss_pred HHHHHHHHHHhCCccccCCCCCCCCCCeEEEEEEEEEcCCCCc-cc---cccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3345677777654432211 1235999999999975421 14 6779999999999999999999999999999
Q ss_pred hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCCh
Q 019066 123 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 202 (346)
Q Consensus 123 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~ 202 (346)
+|+++ |++|+|.++|.++.... ....++.+++++|++. ++..++++|+.+...
T Consensus 365 ~g~~~-----~~~G~i~~~g~~i~~~~----~~~~~~~i~~v~q~~~-----------lf~~ti~~Ni~~~~~------- 417 (544)
T TIGR01842 365 VGIWP-----PTSGSVRLDGADLKQWD----RETFGKHIGYLPQDVE-----------LFPGTVAENIARFGE------- 417 (544)
T ss_pred hCCCC-----CCCceEEECCEehhhCC----HHHHhhheEEecCCcc-----------cccccHHHHHhccCC-------
Confidence 99999 99999999999886110 0111334555555544 444456666653211
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
...++++.++++.+++++.+..+|+|++|.++|++ .+||||||||++||||| ||||++||.
T Consensus 418 ~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g------~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~ 491 (544)
T TIGR01842 418 NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGG------ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491 (544)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccccccccCCCc------CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHH
Confidence 12245677889999999999999999999999984 48999999999999999 999999983
Q ss_pred ------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 270 ------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 270 ------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
++|+|+||| ......||+|+ +|++|++++.|+++++..
T Consensus 492 ~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 492 ALANAIKALKARGITVVVITHRPSLLGCVDKIL-VLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEeeCCHHHHhh
Confidence 689999999 34556799996 599999999999987753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=296.82 Aligned_cols=204 Identities=19% Similarity=0.270 Sum_probs=155.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++... + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~~--~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 68 (242)
T cd03295 1 IEFENVTKRYGGGKK--A---VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-----PTSGEIFIDGEDIREQ-- 68 (242)
T ss_pred CEEEEEEEEeCCcce--E---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCeEcCcC--
Confidence 578999999976222 3 777999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc-ccccccce
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP-SVIRKVNF 228 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~ 228 (346)
. . ...++.++|++|+...+..+ +.+|+. +..... ........+++.++++.+++.+ .
T Consensus 69 ~-~-~~~~~~i~~~~q~~~~~~~~tv~e~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~------- 127 (242)
T cd03295 69 D-P-VELRRKIGYVIQQIGLFPHMTVEENIA-----------LVPKLL-KWPKEKIRERADELLALVGLDPAE------- 127 (242)
T ss_pred C-h-HHhhcceEEEccCccccCCCcHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCCCcHH-------
Confidence 0 0 11133566777765544332 444443 322111 1123445567889999999974 1
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.
T Consensus 128 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~ 198 (242)
T cd03295 128 ---------FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE 198 (242)
T ss_pred ---------HHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 35788999999999999999999 999999883 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 317 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 317 (346)
+..+||++++ |++|++++.|+++++...+.++.+..
T Consensus 199 ~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (242)
T cd03295 199 AFRLADRIAI-MKNGEIVQVGTPDEILRSPANDFVAE 234 (242)
T ss_pred HHHhCCEEEE-EECCEEEEecCHHHHHcCCCChHHHH
Confidence 7889999965 99999999999988876655444333
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=299.21 Aligned_cols=220 Identities=15% Similarity=0.228 Sum_probs=163.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|++++.+..+++|+|.++|+++..
T Consensus 10 ~~~l~i~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 10 QEVYQINGMNLWYGQHH---A---LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred CceEEEeeEEEEECCee---e---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 56899999999997532 3 77799999999999999999999999999999998611111268999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . .....++.++|++|+...+...+.+|+ .+...........+..+++.++++.+++.+.+.
T Consensus 84 ~~-~-~~~~~~~~i~~v~q~~~~~~~tv~enl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 146 (259)
T PRK14274 84 GK-V-DLVELRKNIGMVFQKGNPFPQSIFDNV-----------AYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK---- 146 (259)
T ss_pred cc-c-CHHHHhhceEEEecCCcccccCHHHHH-----------HhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh----
Confidence 00 0 011123456788877654433344444 332211111122344567888899999864210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 147 ---------~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~ 217 (259)
T PRK14274 147 ---------DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQA 217 (259)
T ss_pred ---------hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH
Confidence 135788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.++|||+++ |++|++++.|++++++.++.++++..++.
T Consensus 218 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (259)
T PRK14274 218 ARVSDQTAF-FYMGELVECNDTNKMFSNPDDQRTLDYIT 255 (259)
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHhhCCCCHHHHHhhc
Confidence 889999965 99999999999999998887777666543
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=308.31 Aligned_cols=196 Identities=13% Similarity=0.117 Sum_probs=156.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~~~i~~~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 70 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKV---V---VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-----PDRGKITVLGEPVPS 70 (303)
T ss_pred CcEEEEEeEEEEeCCeE---E---EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc
Confidence 34799999999997532 4 666999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.....++.++|++|+...+..+ +.+|+.++.. .. ..+....++++.++++.+++.+
T Consensus 71 -----~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-----------~~-~~~~~~~~~~~~~ll~~~~l~~------ 127 (303)
T TIGR01288 71 -----RARLARVAIGVVPQFDNLDPEFTVRENLLVFGR-----------YF-GMSTREIEAVIPSLLEFARLES------ 127 (303)
T ss_pred -----cHHHHhhcEEEEeccccCCcCCcHHHHHHHHHH-----------Hc-CCCHHHHHHHHHHHHHHCCChh------
Confidence 1111244678888876555443 5555543221 01 1123344567788999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
.+++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 128 -----------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~ 196 (303)
T TIGR01288 128 -----------KADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME 196 (303)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 46888999999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+..+||++++ |++|+++..|+++++...
T Consensus 197 ~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 197 EAERLCDRLCV-LESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhh
Confidence 78889999975 999999999999888654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=289.48 Aligned_cols=185 Identities=18% Similarity=0.247 Sum_probs=144.7
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 66 (213)
T cd03259 1 LELKGLSKTYGSVR---A---LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRDVTG--- 66 (213)
T ss_pred CeeeeeEEEeCCee---e---ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcCc---
Confidence 57899999997532 4 677999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
....++.++|++|+...+..+ ++.+|+.++.... .......++++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 122 (213)
T cd03259 67 ---VPPERRNIGMVFQDYALFPHL----------TVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEG---------- 122 (213)
T ss_pred ---CchhhccEEEEcCchhhccCC----------cHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 111233566777765544332 3344443322111 1122344567889999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. |.|||++|| +.+.
T Consensus 123 -------~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 195 (213)
T cd03259 123 -------LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEAL 195 (213)
T ss_pred -------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHH
Confidence 45888999999999999999999 999999983 789999999 5678
Q ss_pred ccccEEEEEecCCeEeecC
Q 019066 283 SLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g 301 (346)
++||++++ |++|++++.|
T Consensus 196 ~~~d~v~~-l~~G~i~~~g 213 (213)
T cd03259 196 ALADRIAV-MNEGRIVQVG 213 (213)
T ss_pred HhcCEEEE-EECCEEEecC
Confidence 89999965 9999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=285.63 Aligned_cols=197 Identities=13% Similarity=0.193 Sum_probs=162.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||++.+++++|++. +.+ ++||||++++||++||+|||||||||+||+|++++. |++|.|+++|.|..
T Consensus 1 Ml~v~~l~K~y~~~--v~A---vrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-----P~~G~v~idg~d~~--- 67 (245)
T COG4555 1 MLEVTDLTKSYGSK--VQA---VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-----PDSGKVTIDGVDTV--- 67 (245)
T ss_pred CeeeeehhhhccCH--Hhh---hhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-----CCCceEEEeecccc---
Confidence 68999999999873 347 555999999999999999999999999999999999 99999999999875
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
......|+++|..+.....+..+ +.||+.+|... . .....+.++++.++.+.++|.+
T Consensus 68 --~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L-----------~-~l~~~~~kari~~l~k~l~l~~-------- 125 (245)
T COG4555 68 --RDPSFVRRKIGVLFGERGLYARLTARENLKYFARL-----------N-GLSRKEIKARIAELSKRLQLLE-------- 125 (245)
T ss_pred --cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHH-----------h-hhhhhHHHHHHHHHHHHhChHH--------
Confidence 12233466778777444444444 55665554431 1 2335678899999999999998
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC----------------CCceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tviiiTH--~~~ 281 (346)
.++++..+||-||||||+||||| |||||||| +|+++|++|| .++
T Consensus 126 ---------~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Ev 196 (245)
T COG4555 126 ---------YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEV 196 (245)
T ss_pred ---------HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHH
Confidence 67999999999999999999999 99999987 2999999999 689
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
..+|||+++ +++|++|..|+.+++.....
T Consensus 197 ealCDrviv-lh~Gevv~~gs~~~l~~r~~ 225 (245)
T COG4555 197 EALCDRVIV-LHKGEVVLEGSIEALDARTV 225 (245)
T ss_pred HHhhheEEE-EecCcEEEcCCHHHHHHHHh
Confidence 999999965 99999999999988765543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=306.57 Aligned_cols=195 Identities=13% Similarity=0.158 Sum_probs=160.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+++++||+++|+.... + |+||||+|++||++||+||||||||||+|+|+|+.+ |++|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~~~~~~--~---l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-----p~~G~i~i~G~~~~~-- 71 (293)
T COG1131 4 VIEVRNLTKKYGGDKT--A---LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-----PTSGEILVLGYDVVK-- 71 (293)
T ss_pred eeeecceEEEeCCCCE--E---EeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEEcCEeCcc--
Confidence 5899999999984222 4 667999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
...-.++.++|+++++..+..+ +.|++.++... ... +....++++.++++.++|.+
T Consensus 72 ---~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l-----------~~~-~~~~~~~~~~~~l~~~~L~~-------- 128 (293)
T COG1131 72 ---EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL-----------YGL-SKEEAEERIEELLELFGLED-------- 128 (293)
T ss_pred ---CHHHHHhheEEEccCCCCCccccHHHHHHHHHHH-----------hCC-ChhHHHHHHHHHHHHcCCch--------
Confidence 1112245678888888766666 67776655432 111 12455678999999999997
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------C-ceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g-~tviiiTH--~~ 280 (346)
..+++..+||+|||||++||+|| ||||+|||+ | +|||++|| +.
T Consensus 129 ---------~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e 199 (293)
T COG1131 129 ---------KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE 199 (293)
T ss_pred ---------hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHH
Confidence 34778999999999999999999 999999995 4 89999999 78
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+..+||||++ |++|+++..|+++++...
T Consensus 200 ~~~~~d~v~i-l~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 200 AEELCDRVII-LNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHHhCCEEEE-EeCCEEEEeCCHHHHHHh
Confidence 8889999975 999999999988876543
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=317.54 Aligned_cols=200 Identities=13% Similarity=0.111 Sum_probs=158.3
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 ~~L~~~nls~~y~~~~---v---L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-----p~sG~I~l~G~~i~~~ 70 (402)
T PRK09536 2 PMIDVSDLSVEFGDTT---V---LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-----PTAGTVLVAGDDVEAL 70 (402)
T ss_pred ceEEEeeEEEEECCEE---E---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEEcCcC
Confidence 4799999999997633 4 777999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. ... .++.+++++|+...+..+ +.+|+.+.... ............++++.++++.+++.+
T Consensus 71 ~---~~~-~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~--------~~~~~~~~~~~~~~~v~~~le~vgl~~------- 131 (402)
T PRK09536 71 S---ARA-ASRRVASVPQDTSLSFEFDVRQVVEMGRTP--------HRSRFDTWTETDRAAVERAMERTGVAQ------- 131 (402)
T ss_pred C---HHH-HhcceEEEccCCCCCCCCCHHHHHHhccch--------hcccccCCCHHHHHHHHHHHHHcCCch-------
Confidence 1 111 134678888876654444 55554432110 000000112345678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
+.++++.+||||||||++||||| ||||++||. |.|||++|| ++
T Consensus 132 ----------~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~ 201 (402)
T PRK09536 132 ----------FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL 201 (402)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 56889999999999999999999 999999984 789999999 67
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.++|||+++ |++|+++..|++++++..
T Consensus 202 ~~~~adrii~-l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 202 AARYCDELVL-LADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHhCCEEEE-EECCEEEEecCHHHHhCc
Confidence 8899999965 999999999999988764
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=287.97 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=164.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|.++|+.|+|+...+ +++|||+|++||+++|+|||||||||.+.++.|+.+ |++|+|.+||.|++
T Consensus 3 ~~L~a~~l~K~y~kr~V------v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-----~d~G~i~ld~~diT-- 69 (243)
T COG1137 3 STLVAENLAKSYKKRKV------VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-----PDSGKILLDDEDIT-- 69 (243)
T ss_pred cEEEehhhhHhhCCeee------eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-----cCCceEEECCcccc--
Confidence 46899999999987553 666999999999999999999999999999999999 99999999999997
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhcc-CCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
..+.+...|..++|.+|++.-|-.+ |.+|+.. -+.... .....+.+.++.++|+.+++.+
T Consensus 70 -~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~-----------vlE~~~~d~~~~~~~~~l~~LL~ef~i~h------ 131 (243)
T COG1137 70 -KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMA-----------VLEIREKDLKKAERKEELDALLEEFHITH------ 131 (243)
T ss_pred -cCChHHHhhcCcccccccchHhhcCcHHHHHHH-----------HHhhhhcchhHHHHHHHHHHHHHHhchHH------
Confidence 2222333455677777777666555 5555443 332222 1122345556789999999998
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
+.+++..+||||||+|+.||||| |||++|.|+ |.-|+|.-| +
T Consensus 132 -----------lr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR 200 (243)
T COG1137 132 -----------LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR 200 (243)
T ss_pred -----------HhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH
Confidence 67999999999999999999999 999999986 899999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
+...+|||.++ +++|+++.+|+++++.++|.
T Consensus 201 EtL~i~dRaYI-i~~G~vla~G~p~ei~~n~~ 231 (243)
T COG1137 201 ETLDICDRAYI-ISDGKVLAEGSPEEIVNNED 231 (243)
T ss_pred HHHhhhheEEE-EecCeEEecCCHHHHhcChh
Confidence 88999999976 99999999999999998865
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=298.19 Aligned_cols=214 Identities=17% Similarity=0.172 Sum_probs=159.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee---
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~--- 144 (346)
.++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 4 ~~~l~~~~l~~~~~~~~---i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRK---G---CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-----PDAGEVHYRMRDGQL 72 (258)
T ss_pred CceEEEeeeEEEcCCce---e---eeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCccccc
Confidence 34799999999997532 3 777999999999999999999999999999999999 999999999987
Q ss_pred --CCCcccccccccCCCCccceeecccc--cccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC
Q 019066 145 --GDGTYFLQEYTIPRGSNSFSLYDTRS--LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 219 (346)
Q Consensus 145 --i~~~~~~~~~~~~r~~i~~~~~d~~~--~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 219 (346)
+............++.++|++|+... +..+ +.+|+ .+.............++++.++++.+++.
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 141 (258)
T PRK11701 73 RDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNI-----------GERLMAVGARHYGDIRATAGDWLERVEID 141 (258)
T ss_pred cccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHH-----------HHHHHHhccCcHHHHHHHHHHHHHHcCCC
Confidence 43110000001123457888887631 1111 33333 22111111111234456788999999996
Q ss_pred cccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceE
Q 019066 220 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 273 (346)
Q Consensus 220 ~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tv 273 (346)
+. ..++.+.+||||||||++||||| ||||++||. |.|+
T Consensus 142 ~~----------------~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 205 (258)
T PRK11701 142 AA----------------RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205 (258)
T ss_pred hh----------------HHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 31 35788999999999999999999 999999983 7899
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|++|| +.+..+||++++ |++|++++.|++++++.++.+++++.++.
T Consensus 206 i~isH~~~~~~~~~d~i~~-l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 253 (258)
T PRK11701 206 VIVTHDLAVARLLAHRLLV-MKQGRVVESGLTDQVLDDPQHPYTQLLVS 253 (258)
T ss_pred EEEeCCHHHHHHhcCEEEE-EECCEEEEeCCHHHHhcCCCCHHHHHHHH
Confidence 99999 567789999965 99999999999999988776666555543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=298.21 Aligned_cols=213 Identities=15% Similarity=0.141 Sum_probs=160.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+.+|+++||++.|++.. + |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 71 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHE---V---LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGSIVVNGQTINL 71 (257)
T ss_pred CccEEEeeeEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 45799999999997532 4 777999999999999999999999999999999999 999999999988741
Q ss_pred ccc---------ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCC
Q 019066 148 TYF---------LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 148 ~~~---------~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l 218 (346)
... .......++.++|++|+...+..+ ++.+|+.++............++++.++++.+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~----------sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl 141 (257)
T PRK10619 72 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM----------TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGI 141 (257)
T ss_pred ccccccccccccchHHHHHhhceEEEecCcccCCCC----------cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Confidence 000 000111234566777765544332 3334443321111111234456778899999999
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceE
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 273 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tv 273 (346)
.+.. .++++.+||||||||++||||| ||||++||. |+|+
T Consensus 142 ~~~~----------------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ti 205 (257)
T PRK10619 142 DERA----------------QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205 (257)
T ss_pred Chhh----------------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 8621 3778999999999999999999 999999984 7999
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
|+||| +.+..+|||+++ |++|++++.|++++++..+.+++.+.+
T Consensus 206 iivsH~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 251 (257)
T PRK10619 206 VVVTHEMGFARHVSSHVIF-LHQGKIEEEGAPEQLFGNPQSPRLQQF 251 (257)
T ss_pred EEEeCCHHHHHHhcCEEEE-EECCEEEEeCCHHHhhhCccCHHHHHH
Confidence 99999 567789999975 999999999999998877665554443
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=296.67 Aligned_cols=215 Identities=19% Similarity=0.234 Sum_probs=159.5
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|++++.+..|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 75 (250)
T PRK14247 2 NKIEIRDLKVSFGQVE---V---LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75 (250)
T ss_pred ceEEEEeeEEEECCee---e---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC
Confidence 3699999999997632 4 777999999999999999999999999999999997211113699999999987511
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. . ...++.++|++|+...+..+ +.+|+. ++...... ....+..+++.++++.+++.+.+.
T Consensus 76 ~---~-~~~~~~i~~v~q~~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 137 (250)
T PRK14247 76 D---V-IELRRRVQMVFQIPNPIPNLSIFENVA-----------LGLKLNRLVKSKKELQERVRWALEKAQLWDEVK--- 137 (250)
T ss_pred C---H-HHHhccEEEEeccCccCCCCcHHHHHH-----------HHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---
Confidence 0 0 11234567777776544332 444443 32211110 122445577889999999864210
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~ 280 (346)
+.+++++.+||||||||++||||| ||||++||. +.|+|++|| +.
T Consensus 138 ----------~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 207 (250)
T PRK14247 138 ----------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQ 207 (250)
T ss_pred ----------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 135788999999999999999999 999999984 789999999 46
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+..+||++++ |++|++++.|++++++..+.++.++.+
T Consensus 208 ~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 244 (250)
T PRK14247 208 AARISDYVAF-LYKGQIVEWGPTREVFTNPRHELTEKY 244 (250)
T ss_pred HHHhcCEEEE-EECCeEEEECCHHHHHcCCccHHHHHH
Confidence 7789999965 999999999999999877665544443
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=299.80 Aligned_cols=213 Identities=13% Similarity=0.110 Sum_probs=159.7
Q ss_pred cEEEeeeEEEeCCCC------ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce
Q 019066 70 LTDAKNKILSYTPGA------WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 143 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~------~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~ 143 (346)
+|+++||++.|+... ...+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~ 73 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPV---LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-----PAQGTVSFRGQ 73 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEE---eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCE
Confidence 689999999996310 1125 666999999999999999999999999999999999 99999999999
Q ss_pred eCCCcccccccccCCCCccceeeccc--ccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
++..... ......++.++|++|+.. .+..+ +.+|+.+ +............++++.++++.+++..
T Consensus 74 ~i~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~-----------~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 141 (265)
T TIGR02769 74 DLYQLDR-KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGE-----------PLRHLTSLDESEQKARIAELLDMVGLRS 141 (265)
T ss_pred EccccCH-HHHHHHhhceEEEecChhhhcCCCCCHHHHHHH-----------HHHHhcCCCHHHHHHHHHHHHHHcCCCh
Confidence 8751110 011112345778888752 22222 4554432 2111111122344567889999999963
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 274 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvi 274 (346)
. .+++++.+||||||||++||||| ||||++||. |.|||
T Consensus 142 ~----------------~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii 205 (265)
T TIGR02769 142 E----------------DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYL 205 (265)
T ss_pred h----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 2 35888999999999999999999 999999984 78999
Q ss_pred EEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 275 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 275 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
++|| +.+..+||++++ |++|++++.|++++++. +.+++++.+..
T Consensus 206 ivsH~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 251 (265)
T TIGR02769 206 FITHDLRLVQSFCQRVAV-MDKGQIVEECDVAQLLS-FKHPAGRNLQS 251 (265)
T ss_pred EEeCCHHHHHHHhcEEEE-EeCCEEEEECCHHHHcC-CCCHHHHHHHH
Confidence 9999 567789999965 99999999999999876 46777665543
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=297.90 Aligned_cols=219 Identities=19% Similarity=0.252 Sum_probs=162.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++|++++|++. . + |+|+||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++..
T Consensus 11 ~~~l~~~~l~~~~~~~-~--i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF-H--A---LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCCe-E--E---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 5679999999999753 2 4 77799999999999999999999999999999998511111479999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+...+.+| +.++.......+....++++.++++.+++.+.+.
T Consensus 85 ~--~~~~~~~~~~i~~~~q~~~~~~~tv~~n-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 147 (260)
T PRK10744 85 P--KQDIALLRAKVGMVFQKPTPFPMSIYDN-----------IAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK---- 147 (260)
T ss_pred c--ccchHHHhcceEEEecCCccCcCcHHHH-----------HhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH----
Confidence 0 0011112446778887765443224444 4332211111223445567889999999854210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
...++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 148 ---------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~ 218 (260)
T PRK10744 148 ---------DKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQA 218 (260)
T ss_pred ---------HHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+||++++ |++|++++.|++++++..+.+++++.++
T Consensus 219 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 255 (260)
T PRK10744 219 ARCSDYTAF-MYLGELIEFGNTDTIFTKPAKKQTEDYI 255 (260)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHHH
Confidence 789999965 9999999999999998887777765543
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=333.29 Aligned_cols=203 Identities=10% Similarity=0.122 Sum_probs=164.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|++.....+ |+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|++||.++.
T Consensus 337 ~i~~~~v~f~y~~~~~~~i---L~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-----p~~G~I~i~g~~i~--- 405 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPA---LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD-----PQSGRILLDGVDLR--- 405 (576)
T ss_pred eEEEEEEEEECCCCCCCcc---ccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCEEEECCEEHH---
Confidence 5999999999975321114 677999999999999999999999999999999999 99999999999986
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. +...+.+...++++|++.++..++++|+.++.. ...++++.++++.+++.+.+..+|+|+
T Consensus 406 ---~---------~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-------~~~~~~~~~~l~~~~l~~~i~~l~~gl 466 (576)
T TIGR02204 406 ---Q---------LDPAELRARMALVPQDPVLFAASVMENIRYGRP-------DATDEEVEAAARAAHAHEFISALPEGY 466 (576)
T ss_pred ---h---------cCHHHHHHhceEEccCCccccccHHHHHhcCCC-------CCCHHHHHHHHHHcCcHHHHHhCCCCC
Confidence 1 112222233344455555555666677665421 112467888999999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhhcc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 284 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~~~ 284 (346)
+|.++|.+ ..||||||||++||||+ |||||+||+ ++|+|+||| ......
T Consensus 467 ~t~i~~~g------~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~ 540 (576)
T TIGR02204 467 DTYLGERG------VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLK 540 (576)
T ss_pred CceeCCCC------CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh
Confidence 99999984 38999999999999999 999999984 799999999 455567
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||+++ +|++|++++.|++++++..
T Consensus 541 ~d~vi-~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 541 ADRIV-VMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred CCEEE-EEECCEEEeeecHHHHHHc
Confidence 99996 5999999999999988654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=296.21 Aligned_cols=214 Identities=15% Similarity=0.158 Sum_probs=160.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+++++|+++.|++. . + |+|+||+|++||+++|+||||||||||+++|+|++++.. |++|+|.++|+++...
T Consensus 2 ~~~~~~l~~~~~~~-~--~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~~G~i~~~g~~i~~~- 72 (246)
T PRK14269 2 IAKTTNLNLFYGKK-Q--A---LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIA--KIDGLVEIEGKDVKNQ- 72 (246)
T ss_pred ceeeeeeEEEECCE-e--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC--CCceEEEECCEecccC-
Confidence 58999999999753 2 4 777999999999999999999999999999999974111 6899999999987511
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC-ChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS-DSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|+...+...+.+ |+.++....... .....++++.++++.+++.+.+.
T Consensus 73 ---~~~~~~~~i~~~~q~~~l~~~tv~e-----------ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 133 (246)
T PRK14269 73 ---DVVALRKNVGMVFQQPNVFVKSIYE-----------NISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK----- 133 (246)
T ss_pred ---CHHHHhhhEEEEecCCccccccHHH-----------HhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-----
Confidence 0111234567777776544333444 444332111110 12344567889999999965321
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
...++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 134 --------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~ 205 (246)
T PRK14269 134 --------DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGK 205 (246)
T ss_pred --------HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 035778899999999999999999 999999884 889999999 5688
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+||++++ |++|++++.|++++++..+.+++++.++.
T Consensus 206 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 242 (246)
T PRK14269 206 RVADYTAF-FHLGELIEFGESKEFFENPKQEKTKAYLS 242 (246)
T ss_pred hhCcEEEE-EECCEEEEECCHHHHHhCCCcHHHHHHhh
Confidence 89999965 99999999999999988776666555443
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=291.16 Aligned_cols=189 Identities=19% Similarity=0.230 Sum_probs=143.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|+++.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~~-~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 71 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQ-PA---LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-----PTRGKIRFNGQDLTRLR 71 (216)
T ss_pred CeEEEEEEEEecCCCe-eE---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEehhhcC
Confidence 5899999999965321 14 777999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ......++.++|++|+...+..+ ++.+|+.++.... .......++++.++++.+++.+
T Consensus 72 ~-~~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 130 (216)
T TIGR00960 72 G-REIPFLRRHIGMVFQDHRLLSDR----------TVYDNVAFPLRII-GVPPRDANERVSAALEKVGLEG--------- 130 (216)
T ss_pred h-hHHHHHHHhceEEecCccccccc----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 0 00001133567777765544332 3444444332211 1122345677889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|+||| +.+.
T Consensus 131 --------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 131 --------KAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVE 202 (216)
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5677
Q ss_pred ccccEEEEEecCCeE
Q 019066 283 SLTDRARIRTYLGEL 297 (346)
Q Consensus 283 ~~aDri~v~l~~G~i 297 (346)
.+||++++ |++|+|
T Consensus 203 ~~~d~i~~-l~~G~i 216 (216)
T TIGR00960 203 TYRHRTLT-LSRGRL 216 (216)
T ss_pred HhCCEEEE-EeCCcC
Confidence 89999965 999875
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=295.79 Aligned_cols=214 Identities=18% Similarity=0.235 Sum_probs=160.7
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh---ccCCCCCC--CCceEEECce
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV---FENDKFAS--ERAQVTYNSS 143 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl---~~~~~~~p--~~G~I~~~g~ 143 (346)
++|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+ ++ | ++|+|.++|+
T Consensus 2 ~~l~~~~~~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----~~~~~G~i~~~g~ 70 (250)
T PRK14245 2 VKIDARDVNFWYGDFH---A---LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP-----ATRLEGEIRIDGR 70 (250)
T ss_pred cEEEEEEEEEEECCEe---E---EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC-----CCCCceEEEECCE
Confidence 5799999999997632 4 7779999999999999999999999999999997 34 4 5899999999
Q ss_pred eCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
++.... ......++.++|++|+...+...+.+|+ .++............++++.++++.+++.+.+.
T Consensus 71 ~~~~~~--~~~~~~~~~i~~v~q~~~~~~~tv~~nl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 137 (250)
T PRK14245 71 NIYDKG--VQVDELRKNVGMVFQRPNPFPKSIFENV-----------AYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK 137 (250)
T ss_pred eccccc--ccHHHHhhheEEEecCCccCcccHHHHH-----------HHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh
Confidence 875110 0011123456777777554432344444 332211111112334567888999999865220
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH- 278 (346)
..+++++.+||||||||++||||| ||||++||. +.|||++||
T Consensus 138 -------------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~ 204 (250)
T PRK14245 138 -------------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN 204 (250)
T ss_pred -------------hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 135788999999999999999999 999999984 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+.+.++|||+++ |++|++++.|++++++.++.+++++.++.
T Consensus 205 ~~~~~~~~d~v~~-l~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (250)
T PRK14245 205 MQQAARVSDKTAF-FYMGEMVEYDDTKKIFTNPEKEATQNYIT 246 (250)
T ss_pred HHHHHhhCCEEEE-EECCEEEEECCHHHHhcCCCChHHHHhhc
Confidence 567889999965 99999999999999998887777665543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=332.76 Aligned_cols=219 Identities=16% Similarity=0.217 Sum_probs=169.4
Q ss_pred CCcEEEeeeEEEeCCC--------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE
Q 019066 68 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 139 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~--------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~ 139 (346)
.++|+++||++.|+.. ....+ |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|.
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-----p~~G~I~ 382 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHA---VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-----SQGGEII 382 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEE---EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCcEEE
Confidence 4689999999999621 01225 666999999999999999999999999999999999 9999999
Q ss_pred ECceeCCCcccccccccCCCCccceeeccc--ccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHc
Q 019066 140 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 216 (346)
Q Consensus 140 ~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (346)
++|+++..... ......++.++|++|++. .+..+ |.+++ .++............++++.++++.+
T Consensus 383 ~~g~~i~~~~~-~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l-----------~~~~~~~~~~~~~~~~~~~~~~L~~~ 450 (623)
T PRK10261 383 FNGQRIDTLSP-GKLQALRRDIQFIFQDPYASLDPRQTVGDSI-----------MEPLRVHGLLPGKAAAARVAWLLERV 450 (623)
T ss_pred ECCEECCcCCH-HHHHHhcCCeEEEecCchhhcCCCCCHHHHH-----------HHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 99998752110 011112346788888753 33222 44443 33221111112334557888999999
Q ss_pred CCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------C
Q 019066 217 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 270 (346)
Q Consensus 217 ~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g 270 (346)
||.+. .+++++++||||||||++||||| ||||++||. |
T Consensus 451 gL~~~----------------~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g 514 (623)
T PRK10261 451 GLLPE----------------HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514 (623)
T ss_pred CCCHH----------------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 99632 36899999999999999999999 999999983 7
Q ss_pred ceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHH
Q 019066 271 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVD 323 (346)
Q Consensus 271 ~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~ 323 (346)
.|||+||| +.+..+||||++ |++|+|++.|++++++.+|.++|++.++.++.
T Consensus 515 ~tvi~isHdl~~v~~~~dri~v-l~~G~iv~~g~~~~i~~~p~~~~~~~l~~~~~ 568 (623)
T PRK10261 515 IAYLFISHDMAVVERISHRVAV-MYLGQIVEIGPRRAVFENPQHPYTRKLMAAVP 568 (623)
T ss_pred CEEEEEeCCHHHHHHhCCEEEE-EECCEEEEecCHHHHhcCCCCHHHHHHHhhCC
Confidence 89999999 578899999975 99999999999999999999999988887654
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=297.58 Aligned_cols=221 Identities=19% Similarity=0.222 Sum_probs=163.0
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+.++|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++.
T Consensus 18 ~~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKR---A---VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCceEEEEEEEEEeCCce---e---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 356899999999997533 4 7779999999999999999999999999999998631111158999999999875
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
... ......++.++|++|+...+...+.+|+. ++............++.+.++++.+++...+.
T Consensus 92 ~~~--~~~~~~~~~i~~v~q~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 155 (268)
T PRK14248 92 DSN--INVVNLRREIGMVFQKPNPFPKSIYNNIT-----------HALKYAGERRKSVLDEIVEESLTKAALWDEVK--- 155 (268)
T ss_pred ccc--ccHHHHhccEEEEecCCccCcccHHHHHH-----------HHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH---
Confidence 110 00111234567777776554434455443 32111111112234566778899998863210
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~ 280 (346)
+.+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 156 ----------~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 225 (268)
T PRK14248 156 ----------DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQ 225 (268)
T ss_pred ----------HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHH
Confidence 135788999999999999999999 999999984 689999999 46
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+..+|||+++ |++|++++.|++++++.++.+++++.++.
T Consensus 226 ~~~~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 264 (268)
T PRK14248 226 ALRVSDRTAF-FLNGDLVEYDQTEQIFTSPKQQKTEDYIN 264 (268)
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHHHh
Confidence 7889999965 99999999999999998888877766554
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=295.26 Aligned_cols=216 Identities=17% Similarity=0.199 Sum_probs=160.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC---CCceEEECcee
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSV 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p---~~G~I~~~g~~ 144 (346)
.++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++.. | ++|+|.++|++
T Consensus 3 ~~~l~~~~l~~~~~~~~---~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~ 73 (252)
T PRK14239 3 EPILQVSDLSVYYNKKK---A---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHN 73 (252)
T ss_pred CceEEEEeeEEEECCee---e---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEE
Confidence 35799999999997532 4 77799999999999999999999999999999985311 4 58999999998
Q ss_pred CCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 145 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 145 i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
+... .......++.++|++|+...+...+.+|+ .++............++++.++++.+++.+.+.
T Consensus 74 ~~~~--~~~~~~~~~~i~~v~q~~~~~~~tv~enl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~- 139 (252)
T PRK14239 74 IYSP--RTDTVDLRKEIGMVFQQPNPFPMSIYENV-----------VYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK- 139 (252)
T ss_pred CcCc--ccchHhhhhcEEEEecCCccCcCcHHHHH-----------HHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-
Confidence 7410 00111123456777777654432344444 332211111112334567788899998864221
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-- 278 (346)
..+++.+.+||||||||++||||| ||||++||. +.|+|++||
T Consensus 140 ------------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 207 (252)
T PRK14239 140 ------------DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSM 207 (252)
T ss_pred ------------HHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCH
Confidence 135788999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+.+..+|||+++ |++|++++.|++++++..|.+++++.++
T Consensus 208 ~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 247 (252)
T PRK14239 208 QQASRISDRTGF-FLDGDLIEYNDTKQMFMNPKHKETEDYI 247 (252)
T ss_pred HHHHHhCCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHHH
Confidence 468889999965 9999999999999999888776665544
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=309.45 Aligned_cols=202 Identities=17% Similarity=0.225 Sum_probs=158.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||++ ||+++|++. . + |+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~-~l~k~~~~~--~-----~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~~~~~~ 66 (352)
T PRK11144 1 MLEL-NFKQQLGDL--C-----L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-----PQKGRIVLNGRVLFDAE 66 (352)
T ss_pred CeEE-EEEEEeCCE--E-----E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccccc
Confidence 5788 999999752 1 3 6999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
........++.++|++|+...+..+ ++.+|+.++.. ....+++.++++.+++.+
T Consensus 67 ~~~~~~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~--------- 120 (352)
T PRK11144 67 KGICLPPEKRRIGYVFQDARLFPHY----------KVRGNLRYGMA-------KSMVAQFDKIVALLGIEP--------- 120 (352)
T ss_pred cccccchhhCCEEEEcCCcccCCCC----------cHHHHHHhhhh-------hhhHHHHHHHHHHcCCch---------
Confidence 0000111234566666665544333 44455544321 123457889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|+||| +++
T Consensus 121 --------~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~ 192 (352)
T PRK11144 121 --------LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEI 192 (352)
T ss_pred --------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Confidence 56899999999999999999999 999999984 789999999 568
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |++|++++.|++++++.+|...+...++.
T Consensus 193 ~~~~d~i~~-l~~G~i~~~g~~~~i~~~p~~~~~~~~~g 230 (352)
T PRK11144 193 LRLADRVVV-LEQGKVKAFGPLEEVWASSAMRPWLPKEE 230 (352)
T ss_pred HHhCCEEEE-EeCCEEEEecCHHHHHhCcchhhhhcccC
Confidence 899999975 99999999999999999998766666554
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=300.73 Aligned_cols=202 Identities=13% Similarity=0.228 Sum_probs=156.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~~--~---l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-----p~~G~i~i~g~~~~~ 72 (283)
T PRK13636 3 DYILKVEELNYNYSDGTH--A---LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-----PSSGRILFDGKPIDY 72 (283)
T ss_pred CceEEEEeEEEEeCCCCe--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCccEEEECCEECCC
Confidence 347999999999964333 4 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|++.. .++..++.+|+.++.... ..+....++++.++++.++|.+
T Consensus 73 ~~--~~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------- 133 (283)
T PRK13636 73 SR--KGLMKLRESVGMVFQDPDN---------QLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEH------- 133 (283)
T ss_pred Cc--chHHHHHhhEEEEecCcch---------hhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh-------
Confidence 00 0001113356677776421 112234555555433211 1223445577899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 134 ----------~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 134 ----------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred ----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 56889999999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+..+|||+++ |++|++++.|++++++..
T Consensus 204 ~~~~~~dri~~-l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 204 IVPLYCDNVFV-MKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHhCCEEEE-EECCEEEEeCCHHHHhcC
Confidence 67789999975 999999999999888764
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=332.43 Aligned_cols=201 Identities=12% Similarity=0.168 Sum_probs=162.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|++... + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 334 ~i~~~~v~~~y~~~~~--~---l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~~ 403 (585)
T TIGR01192 334 AVEFRHITFEFANSSQ--G---VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD-----PTVGQILIDGIDINTVT 403 (585)
T ss_pred eEEEEEEEEECCCCCc--c---ccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC-----CCCCEEEECCEEhhhCC
Confidence 5999999999976443 3 777999999999999999999999999999999999 99999999999875100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.+++++|+ +.++..++++|+.++.. ...++++.++++.+++.+.+..+|+|+
T Consensus 404 ----~~~~~~~i~~v~q~-----------~~lf~~ti~~Ni~~~~~-------~~~~~~~~~a~~~~~~~~~i~~l~~g~ 461 (585)
T TIGR01192 404 ----RESLRKSIATVFQD-----------AGLFNRSIRENIRLGRE-------GATDEEVYEAAKAAAAHDFILKRSNGY 461 (585)
T ss_pred ----HHHHHhheEEEccC-----------CccCcccHHHHHhcCCC-------CCCHHHHHHHHHHhCcHHHHHhccccc
Confidence 00113344555555 44455566777765421 112456778899999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhhcc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 284 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~~~ 284 (346)
+|.+++++ ..||||||||++||||| ||||++||. ++|+|+||| ......
T Consensus 462 ~t~~~~~~------~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~ 535 (585)
T TIGR01192 462 DTLVGERG------NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN 535 (585)
T ss_pred cchhcCCC------CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc
Confidence 99999984 48999999999999999 999999984 799999999 333456
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||+|+ +|++|++++.|+++++.+.
T Consensus 536 ~d~i~-~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 536 ADLVL-FLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred CCEEE-EEECCEEEEECCHHHHHHC
Confidence 99996 5999999999999988765
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=362.69 Aligned_cols=206 Identities=12% Similarity=0.076 Sum_probs=167.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+|+||+|+|+++.. .+ |+||||+|++||.+||||+||||||||+++|.|+++ |++|+|++||.|+.
T Consensus 1308 ~I~f~nVsf~Y~~~~~-~v---L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-----p~~G~I~IDG~di~--- 1375 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLP-LV---LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-----VCGGEIRVNGREIG--- 1375 (1560)
T ss_pred eEEEEEEEEEeCCCCC-ce---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcc---
Confidence 5999999999976532 14 777999999999999999999999999999999999 99999999999987
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. +...+.|..+++|+|++.+|..++++||... ....++++.++++.+++.+++..+|+||
T Consensus 1376 ---~---------i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~--------~~~sdeeI~~Al~~a~l~~~I~~lp~Gl 1435 (1560)
T PTZ00243 1376 ---A---------YGLRELRRQFSMIPQDPVLFDGTVRQNVDPF--------LEASSAEVWAALELVGLRERVASESEGI 1435 (1560)
T ss_pred ---c---------CCHHHHHhcceEECCCCccccccHHHHhCcc--------cCCCHHHHHHHHHHCCChHHHhhCcccc
Confidence 1 2223334444445555555555666666421 1223467999999999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc----------CccccCCCC---------------CceEEEEech-hhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------NCPYLSFRD---------------DKPVVVVTHG-DLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL----------DEPts~Ld~---------------g~tviiiTH~-~~~~ 283 (346)
+|.|+|+|. +||||||||++||||| |||||+||. ++|+|+|||+ ....
T Consensus 1436 dt~vge~G~------nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1436 DSRVLEGGS------NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred cccccCCcC------cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH
Confidence 999999854 8999999999999999 999999984 8999999993 3444
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
.||+|+ +|++|+|++.|+|++++.++...+
T Consensus 1510 ~~DrIl-VLd~G~VvE~Gt~~eLl~~~~~~f 1539 (1560)
T PTZ00243 1510 QYDKII-VMDHGAVAEMGSPRELVMNRQSIF 1539 (1560)
T ss_pred hCCEEE-EEECCEEEEECCHHHHHhCCCCHH
Confidence 599996 499999999999999987654433
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=299.83 Aligned_cols=199 Identities=15% Similarity=0.246 Sum_probs=154.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||+++|++... + |+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 2 ~~l~~~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (277)
T PRK13652 2 HLIETRDLCYSYSGSKE--A---LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-----PTSGSVLIRGEPITKE 71 (277)
T ss_pred ceEEEEEEEEEeCCCCc--e---eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCcC
Confidence 36899999999964333 3 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.+++++|++... ++..++.+|+.++.... .......++++.++++.+++.+
T Consensus 72 ----~~~~~~~~i~~v~q~~~~~---------~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 129 (277)
T PRK13652 72 ----NIREVRKFVGLVFQNPDDQ---------IFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEE-------- 129 (277)
T ss_pred ----CHHHHHhheEEEecCcccc---------cccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh--------
Confidence 0011133567777775211 11123444444332211 1223445567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++.+.+||||||||++||||| ||||++||. |.|+|++|| +.
T Consensus 130 ---------~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 200 (277)
T PRK13652 130 ---------LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200 (277)
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 46888999999999999999999 999999983 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.++|||+++ |++|++++.|++++++..
T Consensus 201 ~~~~~drv~~-l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 201 VPEMADYIYV-MDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHhCCEEEE-EECCeEEEECCHHHHhcC
Confidence 7789999965 999999999999988764
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=290.48 Aligned_cols=191 Identities=14% Similarity=0.147 Sum_probs=149.0
Q ss_pred EEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 71 TDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 71 l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
|+++||++.|+++ .. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~~~~~--i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~- 69 (220)
T cd03263 1 LQIRNLTKTYKKGTKP--A---VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-----PTSGTAYINGYSIRTD- 69 (220)
T ss_pred CEEEeeEEEeCCCCce--e---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccc-
Confidence 5799999999753 22 4 677999999999999999999999999999999999 9999999999987410
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++.++|++|+...+... +.+|+. +..... ........+++.++++.+++.+
T Consensus 70 ----~~~~~~~i~~v~q~~~~~~~~tv~~~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 125 (220)
T cd03263 70 ----RKAARQSLGYCPQFDALFDELTVREHLR-----------FYARLK-GLPKSEIKEEVELLLRVLGLTD-------- 125 (220)
T ss_pred ----hHHHhhhEEEecCcCCccccCCHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCCHH--------
Confidence 111133567777775544332 444443 321111 1122344567889999999976
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
..++++.+||+||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 126 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 196 (220)
T cd03263 126 ---------KANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAE 196 (220)
T ss_pred ---------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 45788999999999999999999 999999984 689999999 5677
Q ss_pred ccccEEEEEecCCeEeecCCcccc
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
++||++++ |++|++++.|+++++
T Consensus 197 ~~~d~i~~-l~~g~i~~~~~~~~~ 219 (220)
T cd03263 197 ALCDRIAI-MSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCEEEE-EECCEEEecCCHHHc
Confidence 89999965 999999999987654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=294.93 Aligned_cols=198 Identities=16% Similarity=0.168 Sum_probs=150.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|+.+.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~~--i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQ--A---LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-----PSSGSILLEGTDITKLR 70 (243)
T ss_pred CeEEEeeeeecCCCcc--e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCccEEEECCEEhhhCC
Confidence 4889999999972222 4 777999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc-------cCCChHHHHHHHHHHHHHcCCCccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI-------RRSDSSSLRNRMRCKAHKIGCEPSV 222 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~-------~~~~~~~~~~~~~~~l~~~~l~~~~ 222 (346)
.......++.++|++|+...+..+ ++.+|+.++.... ........++++.++++.+++..
T Consensus 71 -~~~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 137 (243)
T TIGR02315 71 -GKKLRKLRRRIGMIFQHYNLIERL----------TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-- 137 (243)
T ss_pred -HHHHHHHHhheEEEcCCCcccccc----------cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh--
Confidence 000001133456777665444332 3444444322100 00112344567889999999976
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEE
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 276 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviii 276 (346)
..++++.+||||||||++||||| ||||++||. ++|+|++
T Consensus 138 ---------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~ 202 (243)
T TIGR02315 138 ---------------KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIIN 202 (243)
T ss_pred ---------------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 45888999999999999999999 999999984 6899999
Q ss_pred ec--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 277 TH--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 277 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
|| +.+.++||++++ |++|++++.|+++++
T Consensus 203 tH~~~~~~~~~d~v~~-l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 203 LHQVDLAKKYADRIVG-LKAGEIVFDGAPSEL 233 (243)
T ss_pred eCCHHHHHHhcCeEEE-EECCEEEecCCHHHh
Confidence 99 567789999965 999999999988765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=294.53 Aligned_cols=213 Identities=18% Similarity=0.186 Sum_probs=158.4
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee----
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 144 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~---- 144 (346)
++|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|++
T Consensus 2 ~~l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 70 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGK---G---CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-----PDHGTATYIMRSGAEL 70 (253)
T ss_pred ceEEEeeeEEEeCCce---E---eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEEeccccccc
Confidence 4799999999997543 3 777999999999999999999999999999999999 999999999976
Q ss_pred -CCCcccccccccCCCCccceeeccccc--cc-chhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 145 -GDGTYFLQEYTIPRGSNSFSLYDTRSL--SD-DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 145 -i~~~~~~~~~~~~r~~i~~~~~d~~~~--~~-~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
+......+.....++.++|++|+.... .. .+.+|+. +.............++++.++++.+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~-----------~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 139 (253)
T TIGR02323 71 ELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIG-----------ERLMAIGARHYGNIRAAAHDWLEEVEIDP 139 (253)
T ss_pred ccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHH-----------HHHHHhcccchHHHHHHHHHHHHHcCCCh
Confidence 431100000011234578888875321 11 1233332 11100000011234567889999999963
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVV 274 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvi 274 (346)
. .+++.+.+||||||||++||||| ||||++||. +.|+|
T Consensus 140 ~----------------~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 203 (253)
T TIGR02323 140 T----------------RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVI 203 (253)
T ss_pred h----------------hhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2 35888999999999999999999 999999983 78999
Q ss_pred EEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 275 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 275 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+||| +.+..+||++++ |++|++++.|++++++.++.+++++.++.
T Consensus 204 ~vsH~~~~~~~~~d~~~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~l~ 250 (253)
T TIGR02323 204 IVTHDLGVARLLAQRLLV-MQQGRVVESGLTDQVLDDPQHPYTQLLVS 250 (253)
T ss_pred EEeCCHHHHHHhcCEEEE-EECCEEEEECCHHHHhcCCCCHHHHHHHH
Confidence 9999 567788999964 99999999999999988777667665553
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=297.12 Aligned_cols=213 Identities=13% Similarity=0.151 Sum_probs=159.1
Q ss_pred CCcEEEeeeEEEeCCC------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC
Q 019066 68 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
+++|+++||+++|+.. ....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~ 73 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEA---VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGELLID 73 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccce---eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCEEEEC
Confidence 4579999999999631 01124 777999999999999999999999999999999999 999999999
Q ss_pred ceeCCCcccccccccCCCCccceeecccc--cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRS--LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 219 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~--~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 219 (346)
|.++... .....++.++|++|+... +..+ ++.+++.+..............+++.++++.+++.
T Consensus 74 g~~~~~~----~~~~~~~~i~~v~q~~~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 139 (267)
T PRK15112 74 DHPLHFG----DYSYRSQRIRMIFQDPSTSLNPRQ----------RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139 (267)
T ss_pred CEECCCC----chhhHhccEEEEecCchhhcCcch----------hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC
Confidence 9987411 111123356777777531 1111 22333332211111112234456788999999995
Q ss_pred cccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceE
Q 019066 220 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 273 (346)
Q Consensus 220 ~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tv 273 (346)
+. ..++++.+||||||||++||||| ||||++||. |.||
T Consensus 140 ~~----------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tv 203 (267)
T PRK15112 140 PD----------------HASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISY 203 (267)
T ss_pred hH----------------HHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEE
Confidence 32 35778899999999999999999 999999984 7899
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
|++|| +.+..+||++++ |++|++++.|++++++..+.+++.+.++
T Consensus 204 iivsH~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 250 (267)
T PRK15112 204 IYVTQHLGMMKHISDQVLV-MHQGEVVERGSTADVLASPLHELTKRLI 250 (267)
T ss_pred EEEeCCHHHHHHhcCEEEE-EECCEEEecCCHHHHhcCCCCHHHHHHH
Confidence 99999 578889999965 9999999999999998877666555444
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=290.73 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=152.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~- 68 (232)
T cd03218 1 LRAENLSKRYGKRK---V---VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-----PDSGKILLDGQDITKLP- 68 (232)
T ss_pred CeEEEEEEEeCCEE---e---eccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEecccCC-
Confidence 57899999997532 4 677999999999999999999999999999999999 99999999998874110
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.....++.++|++|+...+.++ +.+|+.+ ..... ........+++.++++.+++.+
T Consensus 69 --~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 125 (232)
T cd03218 69 --MHKRARLGIGYLPQEASIFRKLTVEENILA-----------VLEIR-GLSKKEREEKLEELLEEFHITH--------- 125 (232)
T ss_pred --HhHHHhccEEEecCCccccccCcHHHHHHH-----------HHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 0011123467777776555443 4554433 21111 1112344567788999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 126 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 197 (232)
T cd03218 126 --------LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETL 197 (232)
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 46888999999999999999999 999999984 789999999 5788
Q ss_pred ccccEEEEEecCCeEeecCCccccccC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+||++++ |++|+++..|++++++..
T Consensus 198 ~~~d~i~~-l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 198 SITDRAYI-IYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred HhCCEEEE-EECCeEEEEeCHHHhhcC
Confidence 99999965 999999999998877543
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=285.48 Aligned_cols=184 Identities=15% Similarity=0.207 Sum_probs=145.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~v~~~g~~~~~--- 66 (213)
T cd03301 1 VELENVTKRFGNVT---A---LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-----PTSGRIYIGGRDVTD--- 66 (213)
T ss_pred CEEEeeEEEECCee---e---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc---
Confidence 57999999997643 4 777999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...+... +.+|+. ++.... .......++++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~tv~~~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (213)
T cd03301 67 ---LPPKDRDIAMVFQNYALYPHMTVYDNIA-----------FGLKLR-KVPKDEIDERVREVAELLQIEH--------- 122 (213)
T ss_pred ---CCcccceEEEEecChhhccCCCHHHHHH-----------HHHHhc-CCCHHHHHHHHHHHHHHcCCHH---------
Confidence 111123567777776544332 444443 321111 1123445567888999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 123 --------~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~ 194 (213)
T cd03301 123 --------LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEA 194 (213)
T ss_pred --------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 46888999999999999999999 999999984 789999999 568
Q ss_pred hccccEEEEEecCCeEeecC
Q 019066 282 LSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g 301 (346)
..+||++++ |++|++++.|
T Consensus 195 ~~~~d~i~~-l~~g~~~~~g 213 (213)
T cd03301 195 MTMADRIAV-MNDGQIQQIG 213 (213)
T ss_pred HHhcCeEEE-EECCEEEecC
Confidence 889999965 9999999875
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=298.97 Aligned_cols=207 Identities=17% Similarity=0.194 Sum_probs=159.2
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
.++|+++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++......
T Consensus 26 ~~~~~~~~~~~~~---i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-----p~~G~i~i~g~~~~~~~~~ 94 (269)
T cd03294 26 SKEEILKKTGQTV---G---VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-----PTSGKVLIDGQDIAAMSRK 94 (269)
T ss_pred hhhhhhhhcCCce---E---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccChh
Confidence 6779999997643 3 777999999999999999999999999999999999 9999999999987521100
Q ss_pred cccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
......++.++|++|+...+..+ +.+|+. ++.... ........+++.++++.+++.+
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 152 (269)
T cd03294 95 ELRELRRKKISMVFQSFALLPHRTVLENVA-----------FGLEVQ-GVPRAEREERAAEALELVGLEG---------- 152 (269)
T ss_pred hhhhhhcCcEEEEecCcccCCCCcHHHHHH-----------HHHHhc-CCCHHHHHHHHHHHHHHcCCHh----------
Confidence 00011234577888776555333 454443 322111 1122344567889999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+.
T Consensus 153 -------~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 153 -------WEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred -------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 46889999999999999999999 999999984 689999999 5678
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
++||++++ |++|++++.|++++++..+.+++++.++
T Consensus 226 ~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 261 (269)
T cd03294 226 RLGDRIAI-MKDGRLVQVGTPEEILTNPANDYVREFF 261 (269)
T ss_pred HhcCEEEE-EECCEEEEeCCHHHHHhCcCcHHHHHHH
Confidence 89999965 9999999999999998877666554443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=293.94 Aligned_cols=214 Identities=15% Similarity=0.198 Sum_probs=161.9
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-----CceEEECce
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSS 143 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-----~G~I~~~g~ 143 (346)
++|+++||+++|++.. + |+++||+|.+|++++|+||||||||||+++|+|+++ |+ +|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~~~---i---l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQ---V---LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-----IVSGARLEGAVLLDNE 71 (251)
T ss_pred ceEEEEEEEEEECCee---E---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----ccccCCcccEEEECCE
Confidence 5799999999997532 4 777999999999999999999999999999999998 65 699999998
Q ss_pred eCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
++... .......++.++|++|+...+.. ++.+|+.++............++++.++++.+++.+.+.
T Consensus 72 ~~~~~--~~~~~~~~~~i~~v~q~~~~~~~-----------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 138 (251)
T PRK14249 72 NIYSP--NLDVVNLRKRVGMVFQQPNPFPK-----------SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138 (251)
T ss_pred Ecccc--ccChHHhhceEEEEecCCccCcC-----------cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh
Confidence 87410 00011124456777777554432 344444443221111112234456777888888864321
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH- 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH- 278 (346)
..+++++.+|||||+||++||||| ||||++||. +.|||++||
T Consensus 139 -------------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~ 205 (251)
T PRK14249 139 -------------DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHN 205 (251)
T ss_pred -------------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 135788999999999999999999 999999984 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+.+.++||++++ |++|++++.|++++++..|.++++..++.
T Consensus 206 ~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14249 206 MQQAARASDWTGF-LLTGDLVEYGRTGEIFSRPRDKRTEDYIT 247 (251)
T ss_pred HHHHHhhCCEEEE-EeCCeEEEeCCHHHHHhCCCChHHHHHHh
Confidence 578889999965 99999999999999999988887766554
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=289.82 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=148.3
Q ss_pred cEEEeeeEEEeCCCCc-eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~-~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+++|++... ..+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~i---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~- 71 (218)
T cd03266 1 MITADALTKRFRDVKKTVQA---VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-----PDAGFATVDGFDVVK- 71 (218)
T ss_pred CeEEEEEEEecCCCCcccee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEEccc-
Confidence 4899999999976411 024 677999999999999999999999999999999999 999999999998751
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ...++.++|++|+...+..+ +.+|+.+.. ... ........+++.++++.+++.+
T Consensus 72 -~~---~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~-----------~~~-~~~~~~~~~~~~~~l~~~~l~~------- 128 (218)
T cd03266 72 -EP---AEARRRLGFVSDSTGLYDRLTARENLEYFA-----------GLY-GLKGDELTARLEELADRLGMEE------- 128 (218)
T ss_pred -CH---HHHHhhEEEecCCcccCcCCCHHHHHHHHH-----------HHc-CCCHHHHHHHHHHHHHHcCCHH-------
Confidence 00 11134567888776555443 555554322 111 1123445678889999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. +.|+|+||| +.
T Consensus 129 ----------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 198 (218)
T cd03266 129 ----------LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198 (218)
T ss_pred ----------HHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 46888999999999999999999 999999984 789999999 46
Q ss_pred hhccccEEEEEecCCeEeecC
Q 019066 281 LLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g 301 (346)
+..+||++++ |++|++++.|
T Consensus 199 ~~~~~d~i~~-l~~G~i~~~~ 218 (218)
T cd03266 199 VERLCDRVVV-LHRGRVVYEG 218 (218)
T ss_pred HHHhcCEEEE-EECCEEeecC
Confidence 8889999965 9999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=272.30 Aligned_cols=207 Identities=15% Similarity=0.124 Sum_probs=172.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|+.... |-||+|+-+.||++.++||||+|||||+|.|+-+.- |.+|+..+.|....-...
T Consensus 3 irv~~in~~yg~~q~------lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-----p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 3 IQLNGINCFYGAHQA------LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred eEEcccccccccchh------eeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-----CCCCeEEecccccccccC
Confidence 899999999987654 778999999999999999999999999999999998 999999998865431111
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
+.+ -..++.|...|+|||...+++. +|.+|+...+..-...++++...++.++|+++.|.+
T Consensus 72 ~~~---------k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~--------- 133 (242)
T COG4161 72 PSD---------KAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP--------- 133 (242)
T ss_pred ccH---------HHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc---------
Confidence 111 1233455666778887788876 888998887765556667888899999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
+.+++|-.|||||+|||+||||| ||||++||+ |+|-++||| +.+.
T Consensus 134 --------~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~ 205 (242)
T COG4161 134 --------YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVAR 205 (242)
T ss_pred --------ccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHH
Confidence 67999999999999999999999 999999996 999999999 6788
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPE 316 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~ 316 (346)
+.|.+++ .|++|+|++.|++. -|.+|..+..+
T Consensus 206 k~as~vv-yme~g~ive~g~a~-~ft~p~te~f~ 237 (242)
T COG4161 206 KTASRVV-YMENGHIVEQGDAS-CFTEPQTEAFK 237 (242)
T ss_pred hhhhheE-eeecCeeEeecchh-hccCccHHHHH
Confidence 9999996 59999999999985 45666544333
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=293.73 Aligned_cols=203 Identities=15% Similarity=0.105 Sum_probs=150.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....
T Consensus 1 l~~~~l~~~~~~~~~--~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~~ 70 (241)
T cd03256 1 IEVENLSKTYPNGKK--A---LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTDINKLKG 70 (241)
T ss_pred CEEeeEEEecCCccE--E---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEEECCEeccccCH
Confidence 578999999975222 4 777999999999999999999999999999999999 999999999998751100
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
......++.++|++|+...+..+ +.+|+.+..... ... .............+++.++++.+++.+
T Consensus 71 -~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 136 (241)
T cd03256 71 -KALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGR-RST---WRSLFGLFPKEEKQRALAALERVGLLD--------- 136 (241)
T ss_pred -hHHHHHHhccEEEcccCcccccCcHHHHHHhhhccc-chh---hhhhcccCcHHHHHHHHHHHHHcCChh---------
Confidence 00011133567777776555433 555543221000 000 000000112334567888999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.+
T Consensus 137 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 137 --------KAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred --------hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45888999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCcccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
..+||++++ |++|++++.|+++++
T Consensus 209 ~~~~d~v~~-l~~G~i~~~~~~~~~ 232 (241)
T cd03256 209 REYADRIVG-LKDGRIVFDGPPAEL 232 (241)
T ss_pred HHhCCEEEE-EECCEEEeecCHHHh
Confidence 889999975 999999999988775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=293.77 Aligned_cols=219 Identities=17% Similarity=0.228 Sum_probs=163.2
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
..|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++...
T Consensus 3 ~~l~~~nl~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 76 (252)
T PRK14256 3 NKVKLEQLNVHFGKNH---A---VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDR 76 (252)
T ss_pred cEEEEEEEEEEeCCee---E---EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccc
Confidence 3589999999997532 4 777999999999999999999999999999999985111113689999999987411
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. ......++.++|++|+...+..+ +.+|+. ++............++++.++++.+++...+.
T Consensus 77 ~--~~~~~~~~~i~~~~q~~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 139 (252)
T PRK14256 77 G--VDPVSIRRRVGMVFQKPNPFPAMSIYDNVI-----------AGYKLNGRVNRSEADEIVESSLKRVALWDEVK---- 139 (252)
T ss_pred c--CChHHhhccEEEEecCCCCCCcCcHHHHHH-----------hHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh----
Confidence 0 01111244577888876555433 555543 22211111122344567888999999864221
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++.+.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 140 ---------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~ 210 (252)
T PRK14256 140 ---------DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQA 210 (252)
T ss_pred ---------HHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHH
Confidence 134678999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |++|++++.|++++++..+.+++++.++.
T Consensus 211 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 248 (252)
T PRK14256 211 ARVSDYTAF-FYMGDLVECGETKKIFTTPEKKQTEDYIT 248 (252)
T ss_pred HhhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHHHh
Confidence 889999965 99999999999999999888888776654
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=296.89 Aligned_cols=219 Identities=16% Similarity=0.230 Sum_probs=162.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|+++|+++..
T Consensus 17 ~~~l~~~nl~~~~~~~~---i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQ---A---LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEECCEE---E---EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 56899999999997532 3 77799999999999999999999999999999999710000389999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.. ......++.++|++|+...+...+.+|+.+ +...... ......++++.++++.+++.+.+.
T Consensus 91 ~~--~~~~~~~~~i~~v~q~~~~~~~tv~enl~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 154 (267)
T PRK14235 91 PR--LDVVELRARVGMVFQKPNPFPKSIYENVAY-----------GPRIHGLARSKAELDEIVETSLRKAGLWEEVK--- 154 (267)
T ss_pred cc--cchHHHhhceEEEecCCCCCCCcHHHHHHH-----------HHHhcccccchHHHHHHHHHHHHHcCCchhhh---
Confidence 10 001112345678888765543345555433 2211110 112344567889999999964210
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~ 280 (346)
+.+++++.+||||||||++||||| ||||++||. +.|+|++|| +.
T Consensus 155 ----------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~ 224 (267)
T PRK14235 155 ----------DRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQ 224 (267)
T ss_pred ----------HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHH
Confidence 034778999999999999999999 999999984 689999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+..+||++++ |++|++++.|++++++.++.++.++.++
T Consensus 225 ~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 262 (267)
T PRK14235 225 AARVSQRTAF-FHLGNLVEVGDTEKMFTNPDDPRTQDYI 262 (267)
T ss_pred HHhhCCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHHh
Confidence 8889999965 9999999999999998777666555443
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=295.88 Aligned_cols=219 Identities=16% Similarity=0.186 Sum_probs=161.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~~~~---i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 91 (267)
T PRK14237 18 EIALSTKDLHVYYGKKE---A---IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91 (267)
T ss_pred CeEEEEeeEEEEECCee---e---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccc
Confidence 45799999999996532 4 77799999999999999999999999999999998611001479999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+...+. +|+.++............++++.++++.+++.+.+.
T Consensus 92 ~--~~~~~~~~~~i~~v~q~~~~~~~tv~-----------eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~---- 154 (267)
T PRK14237 92 K--EINVYEMRKHIGMVFQRPNPFAKSIY-----------ENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK---- 154 (267)
T ss_pred c--cCChHHHhcceEEEecCCccccccHH-----------HHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh----
Confidence 0 00011124456777777544433344 444433211111123345577888999999864220
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 155 ---------~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~ 225 (267)
T PRK14237 155 ---------DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQA 225 (267)
T ss_pred ---------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 135788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+||++++ |++|++++.|++++++..+.+.++..++
T Consensus 226 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 262 (267)
T PRK14237 226 ARASDYTAF-FYLGDLIEYDKTRNIFTNPKLQSTNDYV 262 (267)
T ss_pred HHhcCEEEE-EECCEEEEeCCHHHHhcCCCcHHHHHhh
Confidence 889999975 9999999999999998877665554443
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=310.05 Aligned_cols=220 Identities=10% Similarity=0.135 Sum_probs=185.7
Q ss_pred hHHHHHHhhhhhhhhccC---------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 50 DAVFREVLQSYDQLRTRI---------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
.+.++..+..+.+..+.+ ...+.|++|+|.|....++ |+++||++++|+++|++||||+||||+++
T Consensus 233 me~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~i-----L~~isf~i~~g~tvAiVg~SG~gKsTI~r 307 (497)
T COG5265 233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPI-----LNGISFTIPLGKTVAIVGESGAGKSTILR 307 (497)
T ss_pred HHHHHHhhccchhhccCCCCccccccccceEEEEEEEeeccccchh-----hcCccccccCccEEEEEeCCCCcHHHHHH
Confidence 345666666666554431 1238899999999877654 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|.++|+ +++|.|.+||+|++ ..+.+..+..+++|+|+..++..++..|+.++-.
T Consensus 308 llfRFyD-----~~sG~I~id~qdir---------------~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~----- 362 (497)
T COG5265 308 LLFRFYD-----VNSGSITIDGQDIR---------------DVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP----- 362 (497)
T ss_pred HHHHHhC-----CcCceEEEcchhHH---------------HhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-----
Confidence 9999999 99999999999987 3445555666777777777777888888887543
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
....+.+..+++...+++++..+|+||+|.|||+|+ .|||||||||+|||++ ||.||+||.
T Consensus 363 --~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl------klSggekqrvaiar~ilk~p~il~~deatsaldt~t 434 (497)
T COG5265 363 --DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL------KLSGGEKQRVAIARTILKNPPILILDEATSALDTHT 434 (497)
T ss_pred --cccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee------eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhH
Confidence 345677888999999999999999999999999987 8999999999999998 999999983
Q ss_pred -------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|.|.++|.| ..+.. ||.|+| |++|+|+|.|+|++++..
T Consensus 435 e~~iq~~l~~~~~~rttlviahrlsti~~-adeiiv-l~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 435 EQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIV-LDNGRIVERGTHEELLAA 487 (497)
T ss_pred HHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEE-eeCCEEEecCcHHHHHHc
Confidence 999999999 34555 999965 999999999999999887
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=298.05 Aligned_cols=201 Identities=14% Similarity=0.217 Sum_probs=155.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++... + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~- 69 (275)
T PRK13639 1 ILETRDLKYSYPDGTE--A---LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-----PTSGEVLIKGEPIKYD- 69 (275)
T ss_pred CEEEEEEEEEeCCCCe--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEECccc-
Confidence 4899999999964332 4 777999999999999999999999999999999999 9999999999987410
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|++.. .++..++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 -~~~~~~~~~~i~~v~q~~~~---------~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~--------- 129 (275)
T PRK13639 70 -KKSLLEVRKTVGIVFQNPDD---------QLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEG--------- 129 (275)
T ss_pred -cchHHHHHhheEEEeeChhh---------hhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCch---------
Confidence 00001113456777777521 111224445554432211 1223445577889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
+.++++.+|||||+||++||||| ||||++||. |.|||++|| +.+.
T Consensus 130 --------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~ 201 (275)
T PRK13639 130 --------FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVP 201 (275)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 56889999999999999999999 999999984 789999999 5678
Q ss_pred ccccEEEEEecCCeEeecCCccccccCC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++||++++ |++|++++.|++++++..+
T Consensus 202 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~ 228 (275)
T PRK13639 202 VYADKVYV-MSDGKIIKEGTPKEVFSDI 228 (275)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHhcCh
Confidence 89999975 9999999999999887654
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=293.74 Aligned_cols=219 Identities=17% Similarity=0.190 Sum_probs=163.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+++||+|++||+++|+|+||||||||+++|+|++++.+..|++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQ---A---LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred ccEEEEEEeEEEECCee---e---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 46799999999997532 4 77799999999999999999999999999999998711101278999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+...+.+|+.+ +............++++.++++.+++.+.+.
T Consensus 76 ~--~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 138 (251)
T PRK14270 76 K--DVDVVELRKRVGMVFQKPNPFPMSIYDNVAY-----------GPRIHGIKDKKELDKIVEWALKKAALWDEVK---- 138 (251)
T ss_pred c--cccHHHHHhheEEEecCCCcCCCcHHHHHHh-----------HHHhcCCCcHHHHHHHHHHHHHHcCCchhhh----
Confidence 1 0011112345678888765544335555433 2211111112344567788999999854210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
...++++.+||+|||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 139 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~ 209 (251)
T PRK14270 139 ---------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQA 209 (251)
T ss_pred ---------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHH
Confidence 035778999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+|||+++ |++|++++.|++++++..+.++.++.++
T Consensus 210 ~~~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 246 (251)
T PRK14270 210 SRVSDYTAF-FLMGDLIEFNKTEKIFLEPQKKETEDYI 246 (251)
T ss_pred HHhcCEEEE-EECCeEEEeCCHHHHhcCCCChHHHHhh
Confidence 889999965 9999999999999999888887766554
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=294.43 Aligned_cols=217 Identities=18% Similarity=0.259 Sum_probs=159.0
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLRVYYGSNH---V---IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEEEEeCCee---e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 4799999999997532 4 777999999999999999999999999999999998110002499999999987410
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
... . ...++.++|++|+...+... +.+|+.+ +...... .......+++.++++.+++...+.
T Consensus 77 ~~~-~-~~~~~~i~~~~q~~~~~~~~tv~enl~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--- 140 (253)
T PRK14267 77 DVD-P-IEVRREVGMVFQYPNPFPHLTIYDNVAI-----------GVKLNGLVKSKKELDERVEWALKKAALWDEVK--- 140 (253)
T ss_pred ccC-h-HHHhhceeEEecCCccCCCCcHHHHHHH-----------HHHhcCccCCHHHHHHHHHHHHHHcCCccchh---
Confidence 000 0 01134567777776555443 5555433 2111100 122344567888999999864220
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~ 280 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.
T Consensus 141 ----------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 210 (253)
T PRK14267 141 ----------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ 210 (253)
T ss_pred ----------hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 035788999999999999999999 999999984 689999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+..+||++++ |++|++++.|++++++..+.++....+
T Consensus 211 ~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 247 (253)
T PRK14267 211 AARVSDYVAF-LYLGKLIEVGPTRKVFENPEHELTEKY 247 (253)
T ss_pred HHhhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHH
Confidence 7889999965 999999999999998877655444433
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=292.73 Aligned_cols=217 Identities=17% Similarity=0.186 Sum_probs=160.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++..+..+++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGDFQ---A---LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECCce---e---eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 589999999997542 4 7779999999999999999999999999999999761111127899999999875100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. .....++.++|++|+...+...+.+|+ .++............++++.++++.+++.+.+.
T Consensus 77 -~-~~~~~~~~i~~~~q~~~~~~~t~~~ni-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------ 137 (250)
T PRK14240 77 -I-DVNQLRKRVGMVFQQPNPFPMSIYDNV-----------AYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK------ 137 (250)
T ss_pred -c-chHHHhccEEEEecCCccCcccHHHHH-----------HHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH------
Confidence 0 011124456777777544432244444 332211111122345677888899998854220
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
...++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 138 -------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 210 (250)
T PRK14240 138 -------DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASR 210 (250)
T ss_pred -------HHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHh
Confidence 135788999999999999999999 999999984 789999999 56888
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+||++++ |++|++++.|++++++..+.++++..++
T Consensus 211 ~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14240 211 ISDKTAF-FLNGEIVEFGDTVDLFTNPKDKRTEDYI 245 (250)
T ss_pred hCCEEEE-EECCEEEEeCCHHHHHhCCCChHHHHhh
Confidence 9999965 9999999999999998888777765543
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=299.24 Aligned_cols=205 Identities=16% Similarity=0.205 Sum_probs=154.8
Q ss_pred cEEEeeeEEEeCCCC--ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~--~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+|+++||++.|++.. ...+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKG---LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-----PSSGTITIAGYHITP 73 (287)
T ss_pred EEEEEEEEEEcCCCCCccccc---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEECcc
Confidence 489999999997421 0114 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
..........++.++|++|++.. .++..++.+|+.++.... ........+++.++++.+++...
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~------ 137 (287)
T PRK13641 74 ETGNKNLKKLRKKVSLVFQFPEA---------QLFENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSED------ 137 (287)
T ss_pred ccccchHHHHHhceEEEEeChhh---------hhccchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh------
Confidence 10000011113356677776420 112224555555433211 12234556778999999999731
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 138 ----------~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~ 207 (287)
T PRK13641 138 ----------LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207 (287)
T ss_pred ----------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 46889999999999999999999 999999984 789999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.++||++++ |++|++++.|++++++..
T Consensus 208 ~~~~~d~v~~-l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 208 VAEYADDVLV-LEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHhcC
Confidence 8899999965 999999999999887654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=292.57 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=153.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++. . + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~-~--~---l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 71 (241)
T PRK10895 3 TLTAKNLAKAYKGR-R--V---VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-----RDAGNIIIDDEDISLLP 71 (241)
T ss_pred eEEEeCcEEEeCCE-E--E---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCCC
Confidence 69999999999753 2 4 777999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|+...+..+ +.+|+ .+.............+.++.++++.+++.+
T Consensus 72 ---~~~~~~~~i~~~~q~~~~~~~~tv~enl-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 129 (241)
T PRK10895 72 ---LHARARRGIGYLPQEASIFRRLSVYDNL-----------MAVLQIRDDLSAEQREDRANELMEEFHIEH-------- 129 (241)
T ss_pred ---HHHHHHhCeEEeccCCcccccCcHHHHH-----------hhhhhcccccCHHHHHHHHHHHHHHcCCHH--------
Confidence 0011234567777775544432 44444 332111111122344567889999999976
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+|||||+||++||||| ||||++||. |.|+|++|| +.+
T Consensus 130 ---------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~ 200 (241)
T PRK10895 130 ---------LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRET 200 (241)
T ss_pred ---------HhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHH
Confidence 45788999999999999999999 999999984 889999999 468
Q ss_pred hccccEEEEEecCCeEeecCCccccccC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
..+||++++ |++|++++.|++++++..
T Consensus 201 ~~~~d~v~~-l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 201 LAVCERAYI-VSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHhcCEEEE-EeCCeEEeeCCHHHHhcC
Confidence 899999965 999999999999887653
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=294.58 Aligned_cols=216 Identities=18% Similarity=0.201 Sum_probs=159.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|++++.+..|++|+|.++|+++....
T Consensus 4 ~l~i~~v~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGSFH---A---VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECCEe---e---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 689999999997532 4 7779999999999999999999999999999999972111137999999999874110
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. .....++.++|++|+...+... +.+|+.+ +............++++.++++.+++.+.+.
T Consensus 78 ~--~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 139 (258)
T PRK14241 78 V--DPVAVRRTIGMVFQRPNPFPTMSIRDNVVA-----------GLKLNGVRNKKDLDELVEKSLRGANLWNEVK----- 139 (258)
T ss_pred c--ChHHHhcceEEEccccccCCCCcHHHHHHH-----------HHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-----
Confidence 0 0111234577888776555433 5555433 2111111123445667888999999853210
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
...++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 140 --------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~ 211 (258)
T PRK14241 140 --------DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAA 211 (258)
T ss_pred --------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 135788999999999999999999 999999984 689999999 5678
Q ss_pred ccccEEEEEec------CCeEeecCCccccccCCCCCChHHH
Q 019066 283 SLTDRARIRTY------LGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 283 ~~aDri~v~l~------~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
.+||++++ |+ +|+|++.|++++++..+.+++++.+
T Consensus 212 ~~~d~i~~-l~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 252 (258)
T PRK14241 212 RVSDQTAF-FNLEATGKPGRLVEIDDTEKIFSNPTQKATEDY 252 (258)
T ss_pred HhCCEEEE-EecccCCCCceEEecCCHHHHHhCcCcHHHHHH
Confidence 89999965 85 8999999999999877665555443
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=297.06 Aligned_cols=200 Identities=12% Similarity=0.144 Sum_probs=152.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ml~~~~l~~~~~~~~---i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~~- 68 (271)
T PRK13638 1 MLATSDLWFRYQDEP---V---LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-----PQKGAVLWQGKPLDYS- 68 (271)
T ss_pred CeEEEEEEEEcCCcc---c---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCccEEEECCEEcccc-
Confidence 589999999997533 3 777999999999999999999999999999999999 9999999999987410
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ......++.++|++|+...+. +..++.+|+.+..... ........+++.++++.+++.+
T Consensus 69 ~-~~~~~~~~~i~~v~q~~~~~~---------~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 128 (271)
T PRK13638 69 K-RGLLALRQQVATVFQDPEQQI---------FYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQH--------- 128 (271)
T ss_pred c-CCHHHHHhheEEEeeChhhcc---------ccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHh---------
Confidence 0 001112345677777753211 1112334443322111 1123344567888999999976
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
+.++++.+||||||||++||||| ||||++||. |.|||++|| +.+.
T Consensus 129 --------~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 129 --------FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred --------HhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5677
Q ss_pred ccccEEEEEecCCeEeecCCccccccCC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
.+||++++ |++|++++.|++++++..+
T Consensus 201 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 201 EISDAVYV-LRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHhcCh
Confidence 89999975 9999999999998876643
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=297.02 Aligned_cols=218 Identities=19% Similarity=0.256 Sum_probs=160.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 37 ~~~l~i~~l~~~~~~~~---i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQ---A---LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEECCEe---e---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 56899999999997532 4 77799999999999999999999999999999998610000489999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
... .....++.++|++|+...+...+.+|+. +...... .. ....+++.++++.+++...+.
T Consensus 111 ~~~--~~~~~~~~i~~v~q~~~l~~~tv~enl~-----------~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~i~---- 171 (285)
T PRK14254 111 ADV--DPVALRRRIGMVFQKPNPFPKSIYDNVA-----------YGLKIQG-YD-GDIDERVEESLRRAALWDEVK---- 171 (285)
T ss_pred ccc--chHhhhccEEEEecCCccCcCCHHHHHH-----------HHHHHcC-Cc-HHHHHHHHHHHHHcCCCchhH----
Confidence 100 0111234567777776544333444443 3221111 11 234567889999999864220
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 172 ---------~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i 242 (285)
T PRK14254 172 ---------DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQA 242 (285)
T ss_pred ---------HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 679999999 577
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+|||++++|++|+|++.|++++++..+.+++++.++
T Consensus 243 ~~~~dri~v~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 280 (285)
T PRK14254 243 ARISDKTAVFLTGGELVEFDDTDKIFENPESQRVEDYI 280 (285)
T ss_pred HhhcCEEEEEeeCCEEEEeCCHHHHHhCcCCHHHHHHh
Confidence 88999975557999999999999988777766655544
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=288.84 Aligned_cols=193 Identities=16% Similarity=0.193 Sum_probs=147.4
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~- 68 (222)
T cd03224 1 LEVENLNAGYGKSQ---I---LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITGLP- 68 (222)
T ss_pred CEEeeEEeecCCee---E---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCCCC-
Confidence 57999999997532 4 777999999999999999999999999999999999 99999999998875111
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHc-CCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~ 229 (346)
.....++.++|++|+...+..+ ++.+|+.++..... .....+++.++++.+ ++.+
T Consensus 69 --~~~~~~~~i~~~~q~~~~~~~~----------t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~--------- 124 (222)
T cd03224 69 --PHERARAGIGYVPEGRRIFPEL----------TVEENLLLGAYARR---RAKRKARLERVYELFPRLKE--------- 124 (222)
T ss_pred --HHHHHhcCeEEeccccccCCCC----------cHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhh---------
Confidence 0111234567777776544432 33344433221111 122345566778877 4655
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
.+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 125 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 196 (222)
T cd03224 125 --------RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFAL 196 (222)
T ss_pred --------hhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5678
Q ss_pred ccccEEEEEecCCeEeecCCcccccc
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
++||++++ |++|++++.|++++++.
T Consensus 197 ~~~d~i~~-l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 197 EIADRAYV-LERGRVVLEGTAAELLA 221 (222)
T ss_pred HhccEEEE-eeCCeEEEeCCHHHHhc
Confidence 99999965 99999999998876643
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=296.08 Aligned_cols=198 Identities=16% Similarity=0.149 Sum_probs=153.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++....
T Consensus 1 ml~~~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 70 (274)
T PRK13644 1 MIRLENVSYSYPDGTP--A---LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-----PQKGKVLVSGIDTGDFS 70 (274)
T ss_pred CEEEEEEEEEcCCCCc--e---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEECCccc
Confidence 5899999999964333 3 777999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCCccceeecccc-cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~-~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|++.. +. ..++.+|+.++.... ........+++.++++.+++.+
T Consensus 71 ---~~~~~~~~i~~v~q~~~~~~~----------~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-------- 128 (274)
T PRK13644 71 ---KLQGIRKLVGIVFQNPETQFV----------GRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEK-------- 128 (274)
T ss_pred ---cHHHHHhheEEEEEChhhhcc----------cchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHH--------
Confidence 001113356677776531 21 224445554432211 1223455677889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+|||||+||++||||| ||||++||. |.|+|++|| +.+
T Consensus 129 ---------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~ 199 (274)
T PRK13644 129 ---------YRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL 199 (274)
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 46888999999999999999999 999999984 899999999 455
Q ss_pred hccccEEEEEecCCeEeecCCccccccCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
..||++++ |++|++++.|++++++..+
T Consensus 200 -~~~d~v~~-l~~G~i~~~g~~~~~~~~~ 226 (274)
T PRK13644 200 -HDADRIIV-MDRGKIVLEGEPENVLSDV 226 (274)
T ss_pred -hhCCEEEE-EECCEEEEECCHHHHhcCh
Confidence 56999965 9999999999999887654
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=294.99 Aligned_cols=218 Identities=17% Similarity=0.207 Sum_probs=160.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 11 ~~~l~i~nl~~~~~~~~---i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYGTFE---A---VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEECCEE---E---EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 45799999999997532 4 66699999999999999999999999999999998611111489999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . .....++.++|++|+... +..++.+|+.+....... . ...++++.++++.+++...+.
T Consensus 85 ~~-~-~~~~~~~~i~~v~q~~~l-----------~~~tv~enl~~~~~~~~~-~-~~~~~~~~~~l~~~~l~~~l~---- 145 (269)
T PRK14259 85 PR-V-DPVEVRRRIGMVFQQPNP-----------FPKSIYENIAFGARINGY-T-GDMDELVERSLRKAAVWDECK---- 145 (269)
T ss_pred cc-C-CHHHHhhceEEEccCCcc-----------chhhHHHHHhhhhhhcCC-c-HHHHHHHHHHHHHhCCcchhh----
Confidence 00 0 000112345666665433 333555666554321111 1 233456778889888753210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 146 ---------~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~ 216 (269)
T PRK14259 146 ---------DKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQA 216 (269)
T ss_pred ---------hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 689999999 578
Q ss_pred hccccEEEEEecC-----------CeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYL-----------GELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~-----------G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |++ |++++.|++++++..+.+++++.++.
T Consensus 217 ~~~~d~i~~-l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (269)
T PRK14259 217 VRVSDMTAF-FNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKATQDYIS 265 (269)
T ss_pred HHhcCEEEE-EeccccccccccccceEEEeCCHHHHHhCcCChHHHHHHh
Confidence 899999965 986 67999999999999888877665554
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=291.96 Aligned_cols=219 Identities=16% Similarity=0.207 Sum_probs=161.2
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++|++++|+... + |+++||+|++||+++|+|+||||||||+++|+|++++.+..|++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~~~~~~---~---l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~ 76 (251)
T PRK14251 3 NIISAKDVHLSYGNYE---A---LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76 (251)
T ss_pred ceEEEEeeEEEECCee---e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc
Confidence 4699999999997532 4 777999999999999999999999999999999986111113799999999987410
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. ......++.+++++|+...+...+.+|+.+ +............++++.++++.+++....
T Consensus 77 ~--~~~~~~~~~i~~~~q~~~~~~~tv~enl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 137 (251)
T PRK14251 77 K--MDLVELRKEVGMVFQQPTPFPFSVYDNVAY-----------GLKIAGVKDKELIDQRVEESLKQAAIWKET------ 137 (251)
T ss_pred c--chHHHhhccEEEEecCCccCCCcHHHHHHH-----------HHHHcCCCCHHHHHHHHHHHHHHcCCCcch------
Confidence 0 011112445678887765443335555433 211111111223446678889999985311
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
...+++.+.+|||||+||++||||| ||||++||. +.|+|+||| +.+.
T Consensus 138 -------~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~ 210 (251)
T PRK14251 138 -------KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAG 210 (251)
T ss_pred -------HHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHH
Confidence 0035778899999999999999999 999999984 789999999 5678
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
++||++++ |++|++++.|++++++..+.+.+++.++.
T Consensus 211 ~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14251 211 RISDQTAF-LMNGDLIEAGPTEEMFIAPKKQITSDYLN 247 (251)
T ss_pred hhcCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHHHh
Confidence 89999964 99999999999999988887776665554
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=289.43 Aligned_cols=193 Identities=13% Similarity=0.178 Sum_probs=150.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~i~~~- 68 (236)
T TIGR03864 1 ALEVAGLSFAYGARR---A---LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-----AQEGQISVAGHDLRRA- 68 (236)
T ss_pred CEEEEeeEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcccC-
Confidence 489999999997532 4 777999999999999999999999999999999999 9999999999887411
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. . ..++.++|++|+...+..+ +.+|+.+. .... ........+++.++++.+|+.+
T Consensus 69 -~-~--~~~~~i~~~~q~~~~~~~~t~~~~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~gl~~-------- 124 (236)
T TIGR03864 69 -P-R--AALARLGVVFQQPTLDLDLSVRQNLRYH-----------AALH-GLSRAEARERIAALLARLGLAE-------- 124 (236)
T ss_pred -C-h--hhhhhEEEeCCCCCCcccCcHHHHHHHH-----------HHhc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 0 0 1123567777775543332 44444332 1111 1122334567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
.+++.+.+|||||+||++||||| ||||++||. |.|+|++|| +.
T Consensus 125 ---------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 195 (236)
T TIGR03864 125 ---------RADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE 195 (236)
T ss_pred ---------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 45888999999999999999999 999999984 689999999 45
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+. .||++++ |++|++++.|++++++..
T Consensus 196 ~~-~~d~i~~-l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 196 IE-ADDRLVV-LHRGRVLADGAAAELRGA 222 (236)
T ss_pred Hh-hCCEEEE-EeCCeEEEeCCHHHHHHH
Confidence 65 4999965 999999999999888754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=284.39 Aligned_cols=199 Identities=14% Similarity=0.173 Sum_probs=155.2
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+..|+. .++ |++|||++++||+++|+|+||+|||||+|+|+|+.+ +.+|+|.++|+|+.
T Consensus 2 ~mL~v~~l~~~YG~---~~~---L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-----~~~G~I~~~G~dit-- 68 (237)
T COG0410 2 PMLEVENLSAGYGK---IQA---LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-----PRSGRIIFDGEDIT-- 68 (237)
T ss_pred CceeEEeEeecccc---eeE---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeeEEECCeecC--
Confidence 57999999999987 345 666999999999999999999999999999999999 99999999999997
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcC-CCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~ 227 (346)
....+...+..++|++|..+.|..+ +|.+|+..+...... +...+...+++.+.+= |.+
T Consensus 69 -~~p~~~r~r~Gi~~VPegR~iF~~L----------TVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lke------- 128 (237)
T COG0410 69 -GLPPHERARLGIAYVPEGRRIFPRL----------TVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKE------- 128 (237)
T ss_pred -CCCHHHHHhCCeEeCcccccchhhC----------cHHHHHhhhhhcccc--cccccccHHHHHHHChhHHH-------
Confidence 2234445567788888887766555 444444444321111 0111111344444431 222
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..+++..+|||||||.++||||| ||||.+|.+ |.||++|.+ +
T Consensus 129 ----------r~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~ 198 (237)
T COG0410 129 ----------RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR 198 (237)
T ss_pred ----------HhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence 46899999999999999999999 999999754 779999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
.+.++|||.+| |..|+|+.+|+.+++..+|.
T Consensus 199 ~Al~iaDr~yv-le~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 199 FALEIADRGYV-LENGRIVLSGTAAELLADPD 229 (237)
T ss_pred HHHHhhCEEEE-EeCCEEEEecCHHHHhcCHH
Confidence 89999999975 99999999999999987754
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=290.64 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=160.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGENQ---A---LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEECCee---e---eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 689999999997532 4 7779999999999999999999999999999999982111125899999998863100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.....++.++|++|+...+...+.+|+. ++............++++.++++.+++.+.+.
T Consensus 77 ---~~~~~~~~i~~~~q~~~~~~~tv~~~l~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 136 (249)
T PRK14253 77 ---DVADLRIKVGMVFQKPNPFPMSIYENVA-----------YGLRAQGIKDKKVLDEVVERSLRGAALWDEVK------ 136 (249)
T ss_pred ---chHHHHhheeEEecCCCcCcccHHHHHH-----------hHHHhcCCCchHHHHHHHHHHHHHcCCchhhh------
Confidence 0111234567888776555433555443 32111111112334566778889998864321
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
+.+++++.+|||||+||++||||| ||||++||. +.|||++|| +.+..
T Consensus 137 -------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 209 (249)
T PRK14253 137 -------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARR 209 (249)
T ss_pred -------HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHH
Confidence 135788999999999999999999 999999984 789999999 57888
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+|||+++ |++|++++.|+++++...+.+++++.++.
T Consensus 210 ~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 245 (249)
T PRK14253 210 ISDRTAF-FLMGELVEHDDTQVIFSNPKDDRTQGYVN 245 (249)
T ss_pred hCCEEEE-EECCEEEEeCCHHHHHcCCCChHHHHHhh
Confidence 9999975 99999999999999988777777665543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=286.30 Aligned_cols=186 Identities=18% Similarity=0.232 Sum_probs=146.2
Q ss_pred EEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 71 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 71 l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
|+++|++++|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 70 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTA---LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-----PTSGEVLVDGEPVTG-- 70 (220)
T ss_pred CeEEEEEEEcCCCCcceEE---EeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECcc--
Confidence 57899999997521 0124 677999999999999999999999999999999999 999999999988741
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.++.++|++|+...+..+ +.+|+.+. .... ........+++.++++.+++.+
T Consensus 71 -------~~~~i~~v~q~~~~~~~~tv~e~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 123 (220)
T cd03293 71 -------PGPDRGYVFQQDALLPWLTVLDNVALG-----------LELQ-GVPKAEARERAEELLELVGLSG-------- 123 (220)
T ss_pred -------ccCcEEEEecccccccCCCHHHHHHHH-----------HHHc-CCCHHHHHHHHHHHHHHcCChh--------
Confidence 133567777776554432 55554332 1111 1122344567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++.+.+||||||||++||||| ||||++||. +.|+|++|| +.
T Consensus 124 ---------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 194 (220)
T cd03293 124 ---------FENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194 (220)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 45888999999999999999999 999999984 689999999 46
Q ss_pred hhccccEEEEEec--CCeEeecCCc
Q 019066 281 LLSLTDRARIRTY--LGELLGIPPA 303 (346)
Q Consensus 281 ~~~~aDri~v~l~--~G~iv~~g~~ 303 (346)
+..+||++++ |+ +|++++.++.
T Consensus 195 ~~~~~d~i~~-l~~~~G~i~~~~~~ 218 (220)
T cd03293 195 AVFLADRVVV-LSARPGRIVAEVEV 218 (220)
T ss_pred HHHhCCEEEE-EECCCCEEEEEEEe
Confidence 7889999975 98 7999988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=290.17 Aligned_cols=198 Identities=14% Similarity=0.095 Sum_probs=152.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 70 (242)
T PRK11124 2 SIQLNGINCFYGAHQ---A---LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-----PRSGTLNIAGNHFDFSK 70 (242)
T ss_pred EEEEEeeEEEECCee---e---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccccc
Confidence 489999999997533 3 777999999999999999999999999999999999 99999999999863100
Q ss_pred cccc--cccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 150 FLQE--YTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 150 ~~~~--~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.... ....++.++|++|+...+.++ +.+|+.++... ..........+++.++++.+|+..
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~-----------~~~~~~~~~~~~~~~~l~~~gl~~------ 133 (242)
T PRK11124 71 TPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCR-----------VLGLSKDQALARAEKLLERLRLKP------ 133 (242)
T ss_pred ccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHH-----------HcCCCHHHHHHHHHHHHHHcCChh------
Confidence 0000 011234567788776655443 55554322110 001112334567889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
.+++++.+||||||||++||||| ||||++||. ++|+|++|| +
T Consensus 134 -----------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 134 -----------YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred -----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 46888999999999999999999 999999984 799999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccc
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
.+..+||++++ |++|++++.|+++++.
T Consensus 203 ~~~~~~d~i~~-l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 203 VARKTASRVVY-MENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHhcCEEEE-EECCEEEEeCCHHHhc
Confidence 67788999965 9999999999987753
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=325.11 Aligned_cols=205 Identities=16% Similarity=0.168 Sum_probs=157.3
Q ss_pred hhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
..+++.++++.+++.... ....|+++||+|+|+++.. .+ |+|+||+|++||+++|+||||||||||+|+|
T Consensus 293 ~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~-~i---l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll 368 (529)
T TIGR02857 293 AAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAYPGRRA-PA---LRPVSFTVPPGERVALVGPSGAGKSTLLNLL 368 (529)
T ss_pred HHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEECCCCCc-cc---ccceeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 345667777543221111 1135999999999976431 14 7779999999999999999999999999999
Q ss_pred hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCCh
Q 019066 123 SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDS 202 (346)
Q Consensus 123 ~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~ 202 (346)
+|+++ |++|+|.+||.++. + +...+.+...++|+|++.++..++++|+.++..
T Consensus 369 ~g~~~-----~~~G~I~~~g~~i~------~---------~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~------- 421 (529)
T TIGR02857 369 LGFVD-----PTEGSIAVNGVPLA------D---------ADADSWRDQIAWVPQHPFLFAGTIAENIRLARP------- 421 (529)
T ss_pred hcCCC-----CCCcEEEECCEehh------h---------CCHHHHHhheEEEcCCCcccCcCHHHHHhccCC-------
Confidence 99999 99999999999986 1 112223333444455555555566677665421
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
...++++.++++.+++.+++.++|+||+|+|+|+| .+||||||||++||||| |||||+||+
T Consensus 422 ~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g------~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~ 495 (529)
T TIGR02857 422 DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGG------AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEA 495 (529)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCcccccchhcccc------ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence 12346788999999999999999999999999985 48999999999999999 999999984
Q ss_pred -----------CceEEEEec-hhhhccccEEEE
Q 019066 270 -----------DKPVVVVTH-GDLLSLTDRARI 290 (346)
Q Consensus 270 -----------g~tviiiTH-~~~~~~aDri~v 290 (346)
++|+|+||| -...+.||+|++
T Consensus 496 ~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 496 LVTEALRALAQGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEe
Confidence 799999999 344467999953
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=295.63 Aligned_cols=199 Identities=16% Similarity=0.210 Sum_probs=154.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~~~~-~~---l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-----p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 3 EEIIRVEHISFRYPDAAT-YA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-----PEAGTITVGGMVLSE 73 (279)
T ss_pred CceEEEEEEEEEeCCCCc-cc---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 357999999999964321 14 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. .... .++.++|++|++. .+ +..++.+|+.++.... .....+.++++.++++.++|.+
T Consensus 74 ~---~~~~-~~~~i~~~~q~~~~~~----------~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~------ 132 (279)
T PRK13635 74 E---TVWD-VRRQVGMVFQNPDNQF----------VGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMED------ 132 (279)
T ss_pred C---cHHH-HhhheEEEEeCHHHhc----------ccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChh------
Confidence 1 0011 1334667776642 22 1225556655443221 1223455678899999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 133 -----------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 133 -----------FLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL 201 (279)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence 46889999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+. .||++++ |++|++++.|++++++..
T Consensus 202 ~~~~-~~d~i~~-l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 202 DEAA-QADRVIV-MNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHH-cCCEEEE-EECCEEEEECCHHHHhcC
Confidence 4565 5999975 999999999999887654
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=291.19 Aligned_cols=220 Identities=20% Similarity=0.227 Sum_probs=161.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++..+..+++|+|.++|+++..
T Consensus 4 ~~~i~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 4 EIILSTKNLNLWYGEKH---A---LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred cceEEEeeeEEEECCee---e---eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 45799999999997543 3 77799999999999999999999999999999997511101258999999998752
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+...+.+| +.++............++++.++++.+++.+.+.
T Consensus 78 ~~--~~~~~~~~~i~~~~q~~~~~~~tv~en-----------i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---- 140 (253)
T PRK14261 78 SG--ADVVALRRKIGMVFQRPNPFPKSIYEN-----------VAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK---- 140 (253)
T ss_pred cc--cchhhhhceEEEEecCCccCcccHHHH-----------HHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH----
Confidence 10 001112345677777765443334444 4433221111112344567788899988854221
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 141 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~ 211 (253)
T PRK14261 141 ---------DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQA 211 (253)
T ss_pred ---------HHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHH
Confidence 125788999999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |++|++++.|++++++.++.++.++.++.
T Consensus 212 ~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 249 (253)
T PRK14261 212 ARVSDYTGF-MYLGKLIEFDKTTQIFENPHEELTENYIT 249 (253)
T ss_pred HhhCCEEEE-EECCEEEEcCCHHHHHhCCCcHHHHHHhc
Confidence 789999975 99999999999999988877766665553
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=298.45 Aligned_cols=194 Identities=14% Similarity=0.170 Sum_probs=157.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+++++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~---~---l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-----~~~G~i~i~g~~~~~-- 68 (301)
T TIGR03522 2 SIRVSSLTKLYGTQN---A---LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-----PDSGSVQVCGEDVLQ-- 68 (301)
T ss_pred EEEEEEEEEEECCEE---E---EEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEccc--
Confidence 389999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|+...+.++ +.+|+.++.. .. ..+..+..+++.++++.+++.+
T Consensus 69 ---~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~-----------~~-~~~~~~~~~~~~~~l~~~gl~~-------- 125 (301)
T TIGR03522 69 ---NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG-----------IY-GMKGQLLKQRVEEMIELVGLRP-------- 125 (301)
T ss_pred ---ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHH-----------Hc-CCCHHHHHHHHHHHHHHCCCch--------
Confidence 0111234678888887666554 6666544321 11 1123445567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
.+++++..||||||||++||||| ||||++||. ++|||++|| +++.
T Consensus 126 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~ 196 (301)
T TIGR03522 126 ---------EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196 (301)
T ss_pred ---------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 56888999999999999999999 999999984 789999999 5788
Q ss_pred ccccEEEEEecCCeEeecCCccccccC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|||+++ |++|+++..|+++++...
T Consensus 197 ~~~d~i~~-l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 197 AICDRVII-INKGKIVADKKLDELSAA 222 (301)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHHHh
Confidence 99999975 999999999999988553
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=288.72 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=156.4
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++|+++.|++. . + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~~i~~~~l~~~~~~~-~--~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~ 69 (242)
T TIGR03411 1 PILYLEGLSVSFDGF-K--A---LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-----PDEGSVLFGGTDLTGL 69 (242)
T ss_pred CeEEEEeeEEEcCCe-E--E---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCeecCCC
Confidence 368999999999753 2 4 777999999999999999999999999999999999 9999999999887411
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .....++.++|++|+...+.++ +.+|+.+.... ...+ +.. .........++++.++++.+++.+
T Consensus 70 ~---~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~-~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~l~~------- 135 (242)
T TIGR03411 70 P---EHQIARAGIGRKFQKPTVFENLTVFENLELALPR-DKSV-FAS--LFFRLSAEEKDRIEEVLETIGLAD------- 135 (242)
T ss_pred C---HHHHHhcCeeEeccccccCCCCCHHHHHHHhhhc-cccc-ccc--cccccHHHHHHHHHHHHHHcCCch-------
Confidence 0 1111234577888887666654 66665442210 0000 000 000112344567889999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 136 ----------~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 205 (242)
T TIGR03411 136 ----------EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFV 205 (242)
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 45888999999999999999999 999999984 689999999 568
Q ss_pred hccccEEEEEecCCeEeecCCcccccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
..+||++++ |++|++++.|++++++.
T Consensus 206 ~~~~d~i~~-l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 206 RSIADKVTV-LHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHhCCEEEE-EECCeEEeeCCHHHHhc
Confidence 889999975 99999999999888764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=297.11 Aligned_cols=208 Identities=12% Similarity=0.105 Sum_probs=161.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|+++... + |+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|+++|.++...
T Consensus 3 i~~~nls~~~~~~~~~-~---l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------~~G~I~i~g~~i~~~-- 70 (275)
T cd03289 3 MTVKDLTAKYTEGGNA-V---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGDIQIDGVSWNSV-- 70 (275)
T ss_pred EEEEEEEEEeCCCCCc-c---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEhhhC--
Confidence 7999999999643221 4 777999999999999999999999999999999996 479999999987510
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.. ...++.++|++|+ +.+++.++.+|+.... . ...+++.++++.+||.+.+..+|++++
T Consensus 71 -~~-~~lr~~i~~v~q~-----------~~lf~~tv~~nl~~~~----~----~~~~~~~~~l~~~gL~~~~~~~p~~l~ 129 (275)
T cd03289 71 -PL-QKWRKAFGVIPQK-----------VFIFSGTFRKNLDPYG----K----WSDEEIWKVAEEVGLKSVIEQFPGQLD 129 (275)
T ss_pred -CH-HHHhhhEEEECCC-----------cccchhhHHHHhhhcc----C----CCHHHHHHHHHHcCCHHHHHhCccccc
Confidence 00 0012344555554 4455556667764210 0 113467788999999998999999999
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
|.|++. ...||||||||++||||| ||||++||. ++|||+||| +.+. .
T Consensus 130 ~~~~~~------g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~-~ 202 (275)
T cd03289 130 FVLVDG------GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAML-E 202 (275)
T ss_pred ceecCC------CCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH-h
Confidence 999987 449999999999999999 999999984 799999999 4555 4
Q ss_pred ccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
||||++ |++|++++.|++++++.++ .+...++..
T Consensus 203 ~dri~v-l~~G~i~~~g~~~~l~~~~--~~~~~~~~~ 236 (275)
T cd03289 203 CQRFLV-IEENKVRQYDSIQKLLNEK--SHFKQAISP 236 (275)
T ss_pred CCEEEE-ecCCeEeecCCHHHHhhCc--HHHHHHHhh
Confidence 999975 9999999999999998864 344555543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=293.25 Aligned_cols=218 Identities=16% Similarity=0.189 Sum_probs=160.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++.....|++|+|.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~~~~---i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQ---A---LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEECCee---E---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 45799999999997532 3 77799999999999999999999999999999998710000379999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+...+.+| +.++............++++.++++.+++.+.+.
T Consensus 97 ~--~~~~~~~~~~i~~v~q~~~l~~~tv~en-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 159 (272)
T PRK14236 97 K--KVDVAELRRRVGMVFQRPNPFPKSIYEN-----------VVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK---- 159 (272)
T ss_pred c--ccCHHHHhccEEEEecCCccCcccHHHH-----------HHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH----
Confidence 1 0001112345677777765443334444 4332211111112334567888899999865321
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
+.+++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 160 ---------~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~ 230 (272)
T PRK14236 160 ---------DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQA 230 (272)
T ss_pred ---------HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
.++|||+++ |++|++++.|++++++..+.+.++..+
T Consensus 231 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 266 (272)
T PRK14236 231 ARVSDYTAF-MYMGKLVEYGDTDTLFTSPAKKQTEDY 266 (272)
T ss_pred HhhCCEEEE-EECCEEEecCCHHHHhcCCCcHHHHHH
Confidence 889999965 999999999999999887776665554
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=290.29 Aligned_cols=216 Identities=17% Similarity=0.223 Sum_probs=158.6
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|++++.+..|++|+|.++|.++...
T Consensus 2 ~~l~~~~l~~~~~~~~---~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 2 PIIEIENFSAYYGEKK---A---VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred ceEEEEeeEEEeCCce---e---EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 3799999999997532 4 777999999999999999999999999999999987211112899999999887411
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. ......++.++|++|+...+...+.+|+.+ +............++++.++++.+++...+.
T Consensus 76 ~--~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----- 137 (250)
T PRK14262 76 Q--LDVTEYRKKVGMVFQKPTPFPMSIYDNVAF-----------GPRIHGVKSKHKLDRIVEESLKKAALWDEVK----- 137 (250)
T ss_pred h--hhHHHhhhhEEEEecCCccCcccHHHHHHH-----------HHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-----
Confidence 0 011112345778887765443224444433 2211111112334566788899999864220
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
...++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 138 --------~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~ 209 (250)
T PRK14262 138 --------SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAI 209 (250)
T ss_pred --------HHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 135788999999999999999999 999999984 789999999 4678
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 317 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 317 (346)
.+||++++ |++|+++..|+++++...+.++..+.
T Consensus 210 ~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~ 243 (250)
T PRK14262 210 RIADYIAF-MYRGELIEYGPTREIVERPKNKLTEE 243 (250)
T ss_pred HhCCEEEE-EECCEEEEecCHHHHHhCCCChHHHH
Confidence 89999975 99999999999999887665544433
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=293.38 Aligned_cols=220 Identities=15% Similarity=0.185 Sum_probs=160.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++.. + |+|+||+|++||+++|+|+||||||||+++|+|+++..+..|++|+|.++|+++..
T Consensus 22 ~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDH---A---LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred ceEEEEeeeEEEECCcc---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 56899999999997543 3 77799999999999999999999999999999998521111589999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+...+. +|+.++.......+....++.+.++++.+++...+.
T Consensus 96 ~~--~~~~~~~~~i~~v~q~~~~~~~tv~-----------eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~---- 158 (271)
T PRK14238 96 KS--YSVEELRTNVGMVFQKPNPFPKSIY-----------DNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK---- 158 (271)
T ss_pred cc--ccHHHHhhhEEEEecCCccccccHH-----------HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH----
Confidence 10 0011123456777777654433344 444433211111112233456677788776532110
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 159 ---------~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i 229 (271)
T PRK14238 159 ---------DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQA 229 (271)
T ss_pred ---------HHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHH
Confidence 135788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.++||++++ |++|++++.|++++++.++.+++++.++.
T Consensus 230 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 267 (271)
T PRK14238 230 ARISDKTAF-FLNGYVNEYDDTDKIFSNPSDKRTEDYIT 267 (271)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHcCCCCHHHHHHHh
Confidence 889999975 99999999999999988887766655443
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=289.96 Aligned_cols=210 Identities=16% Similarity=0.215 Sum_probs=156.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 3 ~~~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 71 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLL---A---VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-----PTGGTILLRGQHIEG 71 (255)
T ss_pred CceEEEeeEEEEECCEE---E---EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-----CCcceEEECCEECCC
Confidence 34799999999997532 4 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHH-Hhhhhcchhhcc--CCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWI-MEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v-~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
.. .....+..++|++|+...+.++ +.+|+.+..... ...+..+..... .....+..+++.++++.+++.+
T Consensus 72 ~~---~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--- 145 (255)
T PRK11300 72 LP---GHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE--- 145 (255)
T ss_pred CC---HHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh---
Confidence 10 0111233466778877666554 666665432100 000000000000 0011233456788899999976
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEe
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 277 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiT 277 (346)
..++++.+||||||||++||||| ||||++||. |.|||++|
T Consensus 146 --------------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s 211 (255)
T PRK11300 146 --------------HANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211 (255)
T ss_pred --------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 56889999999999999999999 999999983 68999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
| +.+..+||++++ |++|+++..|++++++..
T Consensus 212 H~~~~~~~~~d~i~~-l~~g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 212 HDMKLVMGISDRIYV-VNQGTPLANGTPEEIRNN 244 (255)
T ss_pred CCHHHHHHhCCEEEE-EECCeEEecCCHHHHhhC
Confidence 9 567889999965 999999999998887643
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=287.17 Aligned_cols=182 Identities=15% Similarity=0.181 Sum_probs=146.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 10 ~~~l~i~~l~~~~~~~~---i---l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~- 77 (257)
T PRK11247 10 GTPLLLNAVSKRYGERT---V---LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-----PSAGELLAGTAPLA- 77 (257)
T ss_pred CCcEEEEEEEEEECCcc---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEHH-
Confidence 45799999999997643 3 777999999999999999999999999999999999 99999999987753
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .++.++|++|+...+..+ ++.+|+.++.. ...++++.++++.+++.+
T Consensus 78 -----~---~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~------- 125 (257)
T PRK11247 78 -----E---AREDTRLMFQDARLLPWK----------KVIDNVGLGLK-------GQWRDAALQALAAVGLAD------- 125 (257)
T ss_pred -----H---hhCceEEEecCccCCCCC----------cHHHHHHhccc-------chHHHHHHHHHHHcCChh-------
Confidence 1 123467777765444322 44455443321 112456788999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||. +.|+|+||| +
T Consensus 126 ----------~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~ 195 (257)
T PRK11247 126 ----------RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS 195 (257)
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 45888999999999999999999 999999983 789999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCcc
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~ 304 (346)
.+..+||++++ |++|++++.++.+
T Consensus 196 ~~~~~~d~i~~-l~~G~i~~~~~~~ 219 (257)
T PRK11247 196 EAVAMADRVLL-IEEGKIGLDLTVD 219 (257)
T ss_pred HHHHhCCEEEE-EECCEEEeecccc
Confidence 67889999965 9999999988764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=293.64 Aligned_cols=219 Identities=17% Similarity=0.207 Sum_probs=162.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++++....|++|+|.++|.++..
T Consensus 19 ~~~l~i~nl~~~~~~~~---i---l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 19 APAMAAVNLTLGFAGKT---V---LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred CcEEEEeeEEEEECCEE---E---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccc
Confidence 56899999999997532 4 77799999999999999999999999999999999821111269999999988741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. ......++.++|++|+...+...+.+|+.+ +............++++.++++.+++.....
T Consensus 93 ~---~~~~~~~~~i~~v~q~~~l~~~tv~eni~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---- 154 (276)
T PRK14271 93 Y---RDVLEFRRRVGMLFQRPNPFPMSIMDNVLA-----------GVRAHKLVPRKEFRGVAQARLTEVGLWDAVK---- 154 (276)
T ss_pred c---chhHHHhhheEEeccCCccCCccHHHHHHH-----------HHHhccCCCHHHHHHHHHHHHHHcCCCchhh----
Confidence 0 001112345678887765554335555433 2111111122344456778899999864210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++.+.+|||||+||++||||| ||||++||. +.|||++|| +.+
T Consensus 155 ---------~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~ 225 (276)
T PRK14271 155 ---------DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQA 225 (276)
T ss_pred ---------hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 024678999999999999999999 999999984 689999999 568
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+|||+++ |++|++++.|++++++..+.++++..++.
T Consensus 226 ~~~~dri~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 263 (276)
T PRK14271 226 ARISDRAAL-FFDGRLVEEGPTEQLFSSPKHAETARYVA 263 (276)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCcCcHHHHHHHh
Confidence 889999965 99999999999999988877766555443
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=293.79 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=152.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 9 ~~~l~i~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~ 77 (265)
T PRK10575 9 DTTFALRNVSFRVPGRT---L---LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-----PSEGEILLDAQPLES 77 (265)
T ss_pred CceEEEeeEEEEECCEE---E---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEehhh
Confidence 45799999999997532 4 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc-c--CCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI-R--RSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~-~--~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
. .... .++.++|++|+...+.++ ++.+|+.++.... . .......++++.++++.+++.+
T Consensus 78 ~---~~~~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 139 (265)
T PRK10575 78 W---SSKA-FARKVAYLPQQLPAAEGM----------TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP---- 139 (265)
T ss_pred C---CHHH-HhhheEEeccCCCCCCCc----------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH----
Confidence 1 0111 133567777765444332 3334443321100 0 0012234567889999999976
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++||
T Consensus 140 -------------~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH 206 (265)
T PRK10575 140 -------------LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLH 206 (265)
T ss_pred -------------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46889999999999999999999 999999884 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.+.++||++++ |++|++++.|+++++..
T Consensus 207 ~~~~i~~~~d~i~~-l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 207 DINMAARYCDYLVA-LRGGEMIAQGTPAELMR 237 (265)
T ss_pred CHHHHHHhCCEEEE-EECCeEEEecCHHHhcC
Confidence 567889999964 99999999998887654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=282.64 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=142.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++. . + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-~--~---l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~--- 66 (208)
T cd03268 1 LKTNDLTKTYGKK-R--V---LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-----PDSGEITFDGKSYQK--- 66 (208)
T ss_pred CEEEEEEEEECCe-E--e---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCCcccc---
Confidence 5799999999653 2 4 777999999999999999999999999999999999 999999999988741
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
....++.++|++|+...+..+ ++.+|+.+...... ..++++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~---------- 118 (208)
T cd03268 67 ---NIEALRRIGALIEAPGFYPNL----------TARENLRLLARLLG-----IRKKRIDEVLDVVGLKD---------- 118 (208)
T ss_pred ---hHHHHhhEEEecCCCccCccC----------cHHHHHHHHHHhcC-----CcHHHHHHHHHHcCCHH----------
Confidence 111133566777765444332 34444433221111 12456788999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 119 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 119 -------SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred -------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 45788999999999999999999 999999984 789999999 56778
Q ss_pred cccEEEEEecCCeEeecC
Q 019066 284 LTDRARIRTYLGELLGIP 301 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g 301 (346)
+||++++ |++|++++.|
T Consensus 192 ~~d~v~~-l~~g~i~~~g 208 (208)
T cd03268 192 VADRIGI-INKGKLIEEG 208 (208)
T ss_pred hcCEEEE-EECCEEEecC
Confidence 9999965 9999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=284.23 Aligned_cols=196 Identities=16% Similarity=0.167 Sum_probs=148.0
Q ss_pred CCcEEEeeeEEEeCCCCc-eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~-~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||++.|+++.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~ 74 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDV---LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-----PTSGDVIFNGQPMS 74 (233)
T ss_pred CceEEEEeEEEEcCCCCcceee---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcC
Confidence 357999999999975321 124 777999999999999999999999999999999999 99999999999875
Q ss_pred CcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.....+.....++.++|++|+...+..+ +.+|+.+. .... .......++++.++++.+|+.+
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~gl~~----- 137 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMP-----------LLIG-KKKPAEINSRALEMLAAVGLEH----- 137 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHH-----------HHhc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 2111000011124577888876555443 55554432 1111 1123345567889999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++.+.+||||||||++||||| ||||++||. |.|+|++||
T Consensus 138 ------------~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 138 ------------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred ------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45788999999999999999999 999999884 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
+.+.. +|+++ +|++|++++.++
T Consensus 206 ~~~~~~-~~~~~-~l~~G~i~~~~~ 228 (233)
T PRK11629 206 LQLAKR-MSRQL-EMRDGRLTAELS 228 (233)
T ss_pred HHHHHh-hCEEE-EEECCEEEEEec
Confidence 45665 57885 599999998775
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=324.18 Aligned_cols=221 Identities=13% Similarity=0.172 Sum_probs=165.8
Q ss_pred CCcEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+++|+++||++.|+... ...+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|.|.++|.++.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~---l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-----p~~G~i~~~g~~~~ 81 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAA---VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-----QAGGLVQCDKMLLR 81 (623)
T ss_pred CceEEEeceEEEecCCCCceeE---EEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCeEEEECCEEec
Confidence 56899999999996421 1235 667999999999999999999999999999999999 99999999997552
Q ss_pred Cc-----cc--ccc---cccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHH
Q 019066 147 GT-----YF--LQE---YTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAH 214 (346)
Q Consensus 147 ~~-----~~--~~~---~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 214 (346)
.. .. ... ..+.++.++|++|++. .+..+ ++.+|+.++...+......+.++++.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~ 151 (623)
T PRK10261 82 RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVF----------TVGEQIAESIRLHQGASREEAMVEAKRMLD 151 (623)
T ss_pred cccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCC----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 10 00 000 0112235666666642 22222 455555544322112234456678999999
Q ss_pred HcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------
Q 019066 215 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------- 269 (346)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------- 269 (346)
.+||.+.. ..+++++++|||||||||+||||| ||||++||.
T Consensus 152 ~~gL~~~~--------------~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~ 217 (623)
T PRK10261 152 QVRIPEAQ--------------TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKE 217 (623)
T ss_pred HCCCCChh--------------hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHh
Confidence 99996410 046889999999999999999999 999999984
Q ss_pred -CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 270 -DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 270 -g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
|+|||+||| +.+.++||||++ |++|++++.|++++++..+.+++++.++..
T Consensus 218 ~g~tvi~itHdl~~~~~~adri~v-l~~G~i~~~g~~~~~~~~~~~~~~~~l~~~ 271 (623)
T PRK10261 218 MSMGVIFITHDMGVVAEIADRVLV-MYQGEAVETGSVEQIFHAPQHPYTRALLAA 271 (623)
T ss_pred cCCEEEEEcCCHHHHHHhCCEEEE-eeCCeecccCCHHHhhcCCCChhhhhhhhc
Confidence 789999999 578899999975 999999999999999988888777666543
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=287.64 Aligned_cols=196 Identities=13% Similarity=0.169 Sum_probs=150.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQ---A---LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-----ATSGRIVFDGKDITD 71 (237)
T ss_pred ccEEEEEeEEEeeCCce---e---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCceEEECCEecCC
Confidence 35799999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHc-CCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~ 225 (346)
.. .....++.++|++|+...+.+. +.+|+. ++... .......+++.++++.+ ++.+
T Consensus 72 ~~---~~~~~~~~i~~~~q~~~~~~~~tv~~~l~-----------~~~~~---~~~~~~~~~~~~~l~~~~~l~~----- 129 (237)
T PRK11614 72 WQ---TAKIMREAVAIVPEGRRVFSRMTVEENLA-----------MGGFF---AERDQFQERIKWVYELFPRLHE----- 129 (237)
T ss_pred CC---HHHHHHhCEEEeccCcccCCCCcHHHHHH-----------Hhhhc---cChhHHHHHHHHHHHHHHHHHH-----
Confidence 10 0011234567777776554432 444443 32110 01122344566777777 4654
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++||
T Consensus 130 ------------~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~ 197 (237)
T PRK11614 130 ------------RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA 197 (237)
T ss_pred ------------HHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 34778999999999999999999 999999984 899999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+.++|||+++ |++|++++.|++++++..
T Consensus 198 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 198 NQALKLADRGYV-LENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHHhhCCEEEE-EeCCEEEeeCCHHHHhcC
Confidence 468899999975 999999999999888643
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=290.28 Aligned_cols=220 Identities=14% Similarity=0.167 Sum_probs=161.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+|+||||||||+++|+|+++......++|+|.++|+++..
T Consensus 5 ~~~l~~~~l~~~~~~~~---i---l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSK---A---IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred cceEEEEEEEEEECCeE---e---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 34799999999997532 4 67799999999999999999999999999999998711100058999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ......++.++|++|+...+...+.+|+. ++.......+.....+++.++++.+++...+.
T Consensus 79 ~~--~~~~~~~~~i~~v~q~~~l~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---- 141 (259)
T PRK14260 79 PR--ININRLRRQIGMVFQRPNPFPMSIYENVA-----------YGVRISAKLPQADLDEIVESALKGAALWQEVK---- 141 (259)
T ss_pred cc--cchHhhhhheEEEecccccCCccHHHHHH-----------HHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh----
Confidence 00 00111234567888776554433555443 32211111122344567788899999854221
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+|||||+||++||||| ||||++||. ++|+|++|| +.+
T Consensus 142 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i 212 (259)
T PRK14260 142 ---------DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQA 212 (259)
T ss_pred ---------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 689999999 678
Q ss_pred hccccEEEEEec-----CCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTY-----LGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~-----~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||++++ |+ +|++++.|++++++..+.++++..++.
T Consensus 213 ~~~~d~i~~-l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 255 (259)
T PRK14260 213 TRVSDFTAF-FSTDESRIGQMVEFGVTTQIFSNPLDSRTRDYVS 255 (259)
T ss_pred HHhcCeEEE-EeccCCCCceEEEeCCHHHHhcCCCChHHHHhhh
Confidence 899999975 87 599999999999988887777666543
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=283.27 Aligned_cols=188 Identities=20% Similarity=0.215 Sum_probs=140.9
Q ss_pred EEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 71 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 71 l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
|+++||+++|+++. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~~~~~i---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~ 72 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQA---LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-----PTSGEVRVDGTDISKLS 72 (218)
T ss_pred CeEeeeEEEecCCCcceeE---EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-----CCceeEEECCEehhhcc
Confidence 57899999997521 0124 777999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
........++.++|++|+...+..+ +.+|+.+ +.... .......++++.++++.+++.+
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 132 (218)
T cd03255 73 EKELAAFRRRHIGFVFQSFNLLPDLTALENVEL-----------PLLLA-GVPKKERRERAEELLERVGLGD-------- 132 (218)
T ss_pred hhHHHHHHhhcEEEEeeccccCCCCcHHHHHHH-----------HHhhc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 0000011234567777776555443 5555433 22111 1112334567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++++.+||||||||++||||| ||||++||. ++|+|++|| +.
T Consensus 133 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 133 ---------RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred ---------hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 45888999999999999999999 999999984 689999999 45
Q ss_pred hhccccEEEEEecCCeE
Q 019066 281 LLSLTDRARIRTYLGEL 297 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~i 297 (346)
+. +||++++ |++|++
T Consensus 204 ~~-~~d~v~~-l~~G~i 218 (218)
T cd03255 204 AE-YADRIIE-LRDGKI 218 (218)
T ss_pred Hh-hhcEEEE-eeCCcC
Confidence 65 8999965 999874
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=282.55 Aligned_cols=187 Identities=19% Similarity=0.221 Sum_probs=141.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~l~~~~l~~~~~~~~~--i---l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVA--A---LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDVNRLR 70 (214)
T ss_pred CEEEEeeeEEeCCCce--e---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccCC
Confidence 4899999999953232 4 677999999999999999999999999999999999 99999999999875110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|+...+... ++.+|+.++.... .......++++.++++.+++.+
T Consensus 71 -~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 129 (214)
T TIGR02673 71 -GRQLPLLRRRIGVVFQDFRLLPDR----------TVYENVALPLEVR-GKKEREIQRRVGAALRQVGLEH--------- 129 (214)
T ss_pred -HHHHHHHHhheEEEecChhhccCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 000011133567777765544332 3334443322111 1123345577889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++.+.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 130 --------~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 130 --------KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred --------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 45788999999999999999999 999999984 799999999 5788
Q ss_pred ccccEEEEEecCCe
Q 019066 283 SLTDRARIRTYLGE 296 (346)
Q Consensus 283 ~~aDri~v~l~~G~ 296 (346)
.+||++++ |++|+
T Consensus 202 ~~~d~i~~-l~~G~ 214 (214)
T TIGR02673 202 RVAHRVII-LDDGR 214 (214)
T ss_pred HhcCEEEE-ecCCC
Confidence 89999965 98874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=281.39 Aligned_cols=182 Identities=14% Similarity=0.175 Sum_probs=145.6
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 1 l~~~~l~~~~~~~~---~---l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~---- 65 (210)
T cd03269 1 LEVENVTKRFGRVT---A---LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPLD---- 65 (210)
T ss_pred CEEEEEEEEECCEE---E---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCCchh----
Confidence 57899999997532 4 777999999999999999999999999999999999 99999999998764
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ..++.++|++|+...+.+. +.+|+.+... .. .......++++.++++.+++.+
T Consensus 66 --~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~-----------~~-~~~~~~~~~~~~~~l~~~~l~~--------- 120 (210)
T cd03269 66 --I--AARNRIGYLPEERGLYPKMKVIDQLVYLAQ-----------LK-GLKKEEARRRIDEWLERLELSE--------- 120 (210)
T ss_pred --H--HHHccEEEeccCCcCCcCCcHHHHHHHHHH-----------Hc-CCChHHHHHHHHHHHHHcCChH---------
Confidence 1 1234567888887655543 5555543211 00 1122345577889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 121 --------~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~ 192 (210)
T cd03269 121 --------YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVE 192 (210)
T ss_pred --------HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 45788999999999999999999 999999984 789999999 5677
Q ss_pred ccccEEEEEecCCeEeecC
Q 019066 283 SLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g 301 (346)
.+||++++ |++|++++.|
T Consensus 193 ~~~d~i~~-l~~g~i~~~~ 210 (210)
T cd03269 193 ELCDRVLL-LNKGRAVLYG 210 (210)
T ss_pred HhhhEEEE-EeCCEEEecC
Confidence 89999965 9999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=294.86 Aligned_cols=221 Identities=18% Similarity=0.203 Sum_probs=161.0
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+.+..+..|++|+|.++|+++.
T Consensus 36 ~~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFE---A---VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred CceEEEEeeeEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 356899999999997532 3 7779999999999999999999999999999998531100138999999998874
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
... ......++.++|++|+...+...+.+| +.++............++++.++++.+++...+.
T Consensus 110 ~~~--~~~~~~~~~i~~v~q~~~l~~~tv~en-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~--- 173 (286)
T PRK14275 110 GKF--TDEVLLRKKIGMVFQKPNPFPKSIFDN-----------IAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS--- 173 (286)
T ss_pred hcc--cchHHhhhcEEEECCCCCCCccCHHHH-----------HHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---
Confidence 100 000112445677777765443334444 4433211111112334567788899998853210
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~ 280 (346)
..+++++.+||||||||++||||| ||||++||. +.|||++|| +.
T Consensus 174 ----------~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~ 243 (286)
T PRK14275 174 ----------DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243 (286)
T ss_pred ----------hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 135788999999999999999999 999999984 679999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+..+|||+++ |++|++++.|++++++..+.+++++.++.
T Consensus 244 ~~~~~d~i~~-L~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 282 (286)
T PRK14275 244 ASRVSDYTMF-FYEGVLVEHAPTAQLFTNPKDRMTEDYIT 282 (286)
T ss_pred HHHhCCEEEE-EECCEEEEeCCHHHHHhCCCcHHHHHHHH
Confidence 7889999965 99999999999999988877766555543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=294.16 Aligned_cols=200 Identities=15% Similarity=0.180 Sum_probs=154.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC---ceEEECcee
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSV 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~---G~I~~~g~~ 144 (346)
..+|+++|+++.|++... .+ |++|||+|++||+++|+||||||||||+++|+|+++ |++ |+|.++|.+
T Consensus 3 ~~~l~i~~l~~~~~~~~~-~~---l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-----p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKK-PA---LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-----PDDNPNSKITVDGIT 73 (282)
T ss_pred CceEEEEEEEEEcCCCCc-cc---eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCCCCCcEEEECCEE
Confidence 457999999999965321 14 777999999999999999999999999999999999 887 899999998
Q ss_pred CCCcccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 145 GDGTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 145 i~~~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
+... .....++.++|++|++. .+. ..++.+|+.++.... .....+.++++.++++.++|.+
T Consensus 74 ~~~~----~~~~~~~~ig~v~q~~~~~~~----------~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~--- 135 (282)
T PRK13640 74 LTAK----TVWDIREKVGIVFQNPDNQFV----------GATVGDDVAFGLENR-AVPRPEMIKIVRDVLADVGMLD--- 135 (282)
T ss_pred CCcC----CHHHHHhheEEEEECHHHhhc----------cCCHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCChh---
Confidence 7510 00011335567666642 221 224455554432211 1223455677899999999987
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEe
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 277 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiT 277 (346)
..++++.+|||||+||++||||| ||||++||. |+|||++|
T Consensus 136 --------------~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t 201 (282)
T PRK13640 136 --------------YIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISIT 201 (282)
T ss_pred --------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 56899999999999999999999 999999983 78999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
| +.+ ..||++++ |++|++++.|++++++..+
T Consensus 202 H~~~~~-~~~d~i~~-l~~G~i~~~g~~~~~~~~~ 234 (282)
T PRK13640 202 HDIDEA-NMADQVLV-LDDGKLLAQGSPVEIFSKV 234 (282)
T ss_pred cCHHHH-HhCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 9 455 57999965 9999999999999887653
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=289.39 Aligned_cols=213 Identities=16% Similarity=0.196 Sum_probs=159.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-----CceEEECce
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-----RAQVTYNSS 143 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-----~G~I~~~g~ 143 (346)
++|+++|++++|++.. + |+|+||+|++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|+
T Consensus 6 ~~l~~~nl~~~~~~~~---i---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 6 PAIKVNNLSFYYDTQK---I---LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-----LESEVRVEGRVEFFNQ 74 (261)
T ss_pred ceEEEeeEEEEeCCee---E---eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-----CCCCccccceEEECCE
Confidence 4799999999997532 4 777999999999999999999999999999999998 64 899999998
Q ss_pred eCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
++.... ......++.++|++|+...+...+.+| +.+.............++++.++++.+++.+.+.
T Consensus 75 ~i~~~~--~~~~~~~~~i~~~~q~~~l~~~tv~en-----------l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 141 (261)
T PRK14258 75 NIYERR--VNLNRLRRQVSMVHPKPNLFPMSVYDN-----------VAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK 141 (261)
T ss_pred Ehhccc--cchHHhhccEEEEecCCccCcccHHHH-----------HHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh
Confidence 863100 000111345677777654443224444 4332111111122334567888999999864221
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEe
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVT 277 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiT 277 (346)
...++++.+|||||+||++||||| ||||++||. +.|+|++|
T Consensus 142 -------------~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivs 208 (261)
T PRK14258 142 -------------HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVS 208 (261)
T ss_pred -------------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 035788899999999999999999 999999873 78999999
Q ss_pred c--hhhhccccEEEEEecC-----CeEeecCCccccccCCCCCChHHHH
Q 019066 278 H--GDLLSLTDRARIRTYL-----GELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~-----G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
| +.+.++||++++ |++ |++++.|++++++.+|.+++++.+.
T Consensus 209 H~~~~i~~~~d~i~~-l~~~~~~~G~i~~~~~~~~~~~~~~~~~~~~~~ 256 (261)
T PRK14258 209 HNLHQVSRLSDFTAF-FKGNENRIGQLVEFGLTKKIFNSPHDSRTREYV 256 (261)
T ss_pred CCHHHHHHhcCEEEE-EccCCCcCceEEEeCCHHHHHhCCCCHHHHHHH
Confidence 9 578899999975 999 9999999999999888776655443
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=292.70 Aligned_cols=202 Identities=15% Similarity=0.207 Sum_probs=154.8
Q ss_pred CCcEEEeeeEEEeCCCC---ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 68 GSLTDAKNKILSYTPGA---WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~---~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
.++|+++||+++|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~v---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~ 73 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLA---LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-----PSEGKVYVDGLD 73 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcce---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEe
Confidence 35799999999997421 1124 777999999999999999999999999999999999 999999999998
Q ss_pred CCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 145 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 145 i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
+.... .....++.++|++|++... ++..++.+|+.++.... .....+.++++.++++.+||.+
T Consensus 74 i~~~~---~~~~~~~~i~~v~q~~~~~---------~~~~~v~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~---- 136 (280)
T PRK13633 74 TSDEE---NLWDIRNKAGMVFQNPDNQ---------IVATIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYE---- 136 (280)
T ss_pred ccccc---cHHHHhhheEEEecChhhh---------hccccHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHCCCHh----
Confidence 75100 0011134567777764211 11123445555443211 1223455678899999999987
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++||
T Consensus 137 -------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH 203 (280)
T PRK13633 137 -------------YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203 (280)
T ss_pred -------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56889999999999999999999 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+.. ||++++ |++|+++..|++++++..
T Consensus 204 ~~~~~~~-~d~v~~-l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 204 YMEEAVE-ADRIIV-MDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred ChHHHhc-CCEEEE-EECCEEEEecCHHHHhcC
Confidence 45655 999965 999999999999988764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=289.49 Aligned_cols=186 Identities=15% Similarity=0.214 Sum_probs=146.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 67 (255)
T PRK11248 1 MLQISHLYADYGGKP---A---LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-----YQHGSITLDGKPVEG-- 67 (255)
T ss_pred CEEEEEEEEEeCCee---e---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC--
Confidence 589999999997532 3 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 68 -------~~~~~~~v~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~--------- 120 (255)
T PRK11248 68 -------PGAERGVVFQNEGLLPWR----------NVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEG--------- 120 (255)
T ss_pred -------CCCcEEEEeCCCccCCCC----------cHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 011346777765444322 3334443322111 1123344567889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 121 --------~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~ 192 (255)
T PRK11248 121 --------AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA 192 (255)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45888999999999999999999 999999983 789999999 578
Q ss_pred hccccEEEEEec--CCeEeecCCcc
Q 019066 282 LSLTDRARIRTY--LGELLGIPPAK 304 (346)
Q Consensus 282 ~~~aDri~v~l~--~G~iv~~g~~~ 304 (346)
..+||++++ |+ +|++++.++.+
T Consensus 193 ~~~~d~i~~-l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 193 VFMATELVL-LSPGPGRVVERLPLN 216 (255)
T ss_pred HHhCCEEEE-EeCCCcEEEEEecCC
Confidence 889999965 88 59999987653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=287.88 Aligned_cols=218 Identities=16% Similarity=0.174 Sum_probs=158.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|+.. . + |+++||+|.+||+++|+||||||||||+++|+|+++..+..+++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~~-~--~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 3 KKIITSSDVHLFYGKF-E--A---LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred cceEEEEeEEEEECCe-e--E---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 5689999999999753 2 4 77799999999999999999999999999999986411100258999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .......++.++|++|+...+...+.+|+.+ +............++++.++++.+++...+.
T Consensus 77 ~--~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~---- 139 (252)
T PRK14255 77 P--NEDVVQLRKQVGMVFQQPNPFPFSIYENVIY-----------GLRLAGVKDKAVLDEAVETSLKQAAIWDEVK---- 139 (252)
T ss_pred c--cccHHHhcCeEEEEECCCccCCCcHHHHHHH-----------HHHHcCCCCHHHHHHHHHHHHHHcCCccchh----
Confidence 0 0011112346778888765554335555433 2111111112233456677888888753210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
...++.+.+||||||||++||||| ||||++||. +.|+|+||| +.+
T Consensus 140 ---------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~ 210 (252)
T PRK14255 140 ---------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQA 210 (252)
T ss_pred ---------hHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHH
Confidence 135788999999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
..+||++++ |++|++++.|++.+++.++.+.+.+.+
T Consensus 211 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 246 (252)
T PRK14255 211 SRISDKTAF-FLTGNLIEFADTKQMFLNPKEKETEDY 246 (252)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcCCCChHHHHH
Confidence 889999965 999999999999999988876654443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=283.07 Aligned_cols=184 Identities=14% Similarity=0.137 Sum_probs=144.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++. . + |+|+||+|++| +++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~~-~--~---l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~-- 66 (211)
T cd03264 1 LQLENLTKRYGKK-R--A---LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-----PSSGTIRIDGQDVLKQ-- 66 (211)
T ss_pred CEEEEEEEEECCE-E--E---EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCCccccc--
Confidence 5799999999653 2 4 67799999999 999999999999999999999999 9999999999887411
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ...++.++|++|+...+..+ +.+|+.+.. ... .......++++.++++.+++.+
T Consensus 67 -~--~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~-----------~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (211)
T cd03264 67 -P--QKLRRRIGYLPQEFGVYPNFTVREFLDYIA-----------WLK-GIPSKEVKARVDEVLELVNLGD--------- 122 (211)
T ss_pred -h--HHHHhheEEecCCCcccccCCHHHHHHHHH-----------HHh-CCCHHHHHHHHHHHHHHCCCHH---------
Confidence 0 11134567777776555443 555544321 111 1112334567889999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
.+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.+
T Consensus 123 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 123 --------RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred --------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 45888999999999999999999 999999984 789999999 56778
Q ss_pred cccEEEEEecCCeEeecC
Q 019066 284 LTDRARIRTYLGELLGIP 301 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g 301 (346)
+|||+++ |++|++++.|
T Consensus 195 ~~d~i~~-l~~g~i~~~g 211 (211)
T cd03264 195 LCNQVAV-LNKGKLVFEG 211 (211)
T ss_pred hCCEEEE-EECCEEEecC
Confidence 9999965 9999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=281.11 Aligned_cols=178 Identities=16% Similarity=0.180 Sum_probs=139.3
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+++||+++|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~~~~--~---l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~---- 66 (205)
T cd03226 1 RIENISFSYKKGTE--I---LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-----ESSGSILLNGKPIKA---- 66 (205)
T ss_pred CcccEEEEeCCcCc--e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEhhh----
Confidence 47899999975222 3 777999999999999999999999999999999999 999999999988741
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
...++.++|++|++.. .++..++.+|+.++..... ...+++.++++.+++.+
T Consensus 67 ---~~~~~~i~~~~q~~~~---------~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~----------- 118 (205)
T cd03226 67 ---KERRKSIGYVMQDVDY---------QLFTDSVREELLLGLKELD-----AGNEQAETVLKDLDLYA----------- 118 (205)
T ss_pred ---HHhhcceEEEecChhh---------hhhhccHHHHHhhhhhhcC-----ccHHHHHHHHHHcCCch-----------
Confidence 1123356677766421 1122255566654322111 12356788999999987
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhcc
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~~ 284 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+..+
T Consensus 119 ------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 119 ------LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred ------hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 46888999999999999999999 999999984 789999999 567789
Q ss_pred ccEEEEEecCCeEe
Q 019066 285 TDRARIRTYLGELL 298 (346)
Q Consensus 285 aDri~v~l~~G~iv 298 (346)
||++++ |++|+++
T Consensus 193 ~d~i~~-l~~G~iv 205 (205)
T cd03226 193 CDRVLL-LANGAIV 205 (205)
T ss_pred CCEEEE-EECCEEC
Confidence 999964 9999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=301.03 Aligned_cols=198 Identities=16% Similarity=0.211 Sum_probs=154.0
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
++ ||+++|++. . + ++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++......
T Consensus 2 ~~-~l~~~~~~~--~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~~~g~~i~~~~~~ 67 (354)
T TIGR02142 2 SA-RFSKRLGDF--S-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-----PDEGEIVLNGRTLFDSRKG 67 (354)
T ss_pred EE-EEEEEECCE--E-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECccCccc
Confidence 44 899999652 2 5 6999999999999999999999999999999999 9999999999987411000
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
......++.++|++|+...+..+ ++.+|+.++.... .....++++.++++.++|.+
T Consensus 68 ~~~~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~----------- 123 (354)
T TIGR02142 68 IFLPPEKRRIGYVFQEARLFPHL----------SVRGNLRYGMKRA---RPSERRISFERVIELLGIGH----------- 123 (354)
T ss_pred cccchhhCCeEEEecCCccCCCC----------cHHHHHHHHhhcc---ChhHHHHHHHHHHHHcCChh-----------
Confidence 00111234567777776555443 3344444332211 12334567889999999987
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhc
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~ 283 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|+||| +.+..
T Consensus 124 ------~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~ 197 (354)
T TIGR02142 124 ------LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLR 197 (354)
T ss_pred ------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 56899999999999999999999 999999984 789999999 56888
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
+||++++ |++|++++.|++++++..|...+
T Consensus 198 ~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 198 LADRVVV-LEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred hCCEEEE-EeCCEEEEECCHHHHhcCcCccc
Confidence 9999965 99999999999999998887665
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=290.64 Aligned_cols=217 Identities=15% Similarity=0.168 Sum_probs=159.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++..
T Consensus 8 ~~~l~i~~v~~~~~~~~---i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 8 ETVLRTENLNVYYGSFL---A---VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred ceEEEEeeeEEEECCEE---E---eecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 35799999999997532 4 67799999999999999999999999999999998611111378999999988741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
... .....++.++|++|+...+ +.++.+|+.++...... ....++++.++++.+++...+.
T Consensus 82 ~~~--~~~~~~~~i~~v~q~~~~~-----------~~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~l~---- 142 (264)
T PRK14243 82 PDV--DPVEVRRRIGMVFQKPNPF-----------PKSIYDNIAYGARINGY--KGDMDELVERSLRQAALWDEVK---- 142 (264)
T ss_pred ccc--ChHHHhhhEEEEccCCccc-----------cccHHHHHHhhhhhcCc--chHHHHHHHHHHHHhCchhhHH----
Confidence 000 0011133456666664333 22445555543321111 1233456677888888854220
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
...++.+.+|||||+||++||||| ||||++||. +.|||++|| +.+
T Consensus 143 ---------~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~ 213 (264)
T PRK14243 143 ---------DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQA 213 (264)
T ss_pred ---------HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 135778999999999999999999 999999984 689999999 578
Q ss_pred hccccEEEEEec---------CCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~---------~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+|||+++ |+ +|++++.|++++++..|.+++++.++
T Consensus 214 ~~~~d~v~~-l~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 259 (264)
T PRK14243 214 ARVSDMTAF-FNVELTEGGGRYGYLVEFDRTEKIFNSPQQQATRDYV 259 (264)
T ss_pred HHhCCEEEE-EecccccccccCceEEEeCCHHHHHhCCCcHHHHHHh
Confidence 899999965 88 89999999999999888877766544
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=288.05 Aligned_cols=217 Identities=18% Similarity=0.219 Sum_probs=158.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++. . + |+|+||+|++||+++|+||||||||||+++|+|++++.+...++|+|.++|.++....
T Consensus 4 ~l~~~~l~~~~~~~-~--~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNIYYGDK-Q--A---VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEEEECCE-E--e---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 68999999999753 2 4 6779999999999999999999999999999999971100013899999999875100
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. .....++.++|++|+...+... +.+|+.+ +.............+.+.++++.+++...+.
T Consensus 78 -~-~~~~~~~~i~~~~q~~~~~~~~t~~enl~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~----- 139 (252)
T PRK14272 78 -V-DPVAMRRRVGMVFQKPNPFPTMSVFDNVVA-----------GLKLAGIRDRDHLMEVAERSLRGAALWDEVK----- 139 (252)
T ss_pred -c-CHHHhhceeEEEeccCccCcCCCHHHHHHH-----------HHHhcCCCCHHHHHHHHHHHHHHcCcchhhh-----
Confidence 0 0111244577888876555433 5555433 2111111112334556777778787653210
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
..+++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 140 --------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 211 (252)
T PRK14272 140 --------DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAA 211 (252)
T ss_pred --------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 135788999999999999999999 999999984 699999999 5678
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
.+|||+++ |++|++++.|++++++..+.++.+..++
T Consensus 212 ~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 247 (252)
T PRK14272 212 RVSDTTSF-FLVGDLVEHGPTDQLFTNPRDERTEAYV 247 (252)
T ss_pred HhCCEEEE-EECCEEEEeCCHHHHHhCcCcHHHHHHH
Confidence 89999965 9999999999999998887766655544
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=291.21 Aligned_cols=199 Identities=13% Similarity=0.224 Sum_probs=153.3
Q ss_pred CCcEEEeeeEEEeCC-CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~-~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++|++++|++ ... + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~~l~~~nl~~~~~~~~~~--i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~ 74 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENN--A---LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-----PQSGEIKIDGITIS 74 (271)
T ss_pred ceEEEEEeEEEEcCCCCcc--c---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEecC
Confidence 468999999999963 222 4 777999999999999999999999999999999999 99999999999875
Q ss_pred CcccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.. .....++.++|++|++. .+.. .++.+|+.++.... .......++++.++++.+++.+
T Consensus 75 ~~----~~~~~~~~i~~v~q~~~~~~~~----------~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----- 134 (271)
T PRK13632 75 KE----NLKEIRKKIGIIFQNPDNQFIG----------ATVEDDIAFGLENK-KVPPKKMKDIIDDLAKKVGMED----- 134 (271)
T ss_pred cC----CHHHHhcceEEEEeCHHHhcCc----------ccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCHH-----
Confidence 10 00111345677777652 2222 24445544432211 1123345567889999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++||
T Consensus 135 ------------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 202 (271)
T PRK13632 135 ------------YLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202 (271)
T ss_pred ------------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec
Confidence 46888999999999999999999 999999984 489999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+.+. .||++++ |++|++++.|++++++..+
T Consensus 203 ~~~~~-~~d~v~~-l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 203 MDEAI-LADKVIV-FSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred hhHHh-hCCEEEE-EECCEEEEecCHHHHhcCH
Confidence 4554 7999965 9999999999988877654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=281.86 Aligned_cols=187 Identities=19% Similarity=0.197 Sum_probs=141.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~~--~---l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~- 69 (214)
T cd03292 1 IEFINVTKTYPNGTA--A---LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-----PTSGTIRVNGQDVSDLR- 69 (214)
T ss_pred CEEEEEEEEeCCCce--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcccCC-
Confidence 578999999965333 4 777999999999999999999999999999999999 99999999999875110
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.......++.++|++|+...+..+ ++.+|+.++.... .......++++.++++.+++.+
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~----------t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 128 (214)
T cd03292 70 GRAIPYLRRKIGVVFQDFRLLPDR----------NVYENVAFALEVT-GVPPREIRKRVPAALELVGLSH---------- 128 (214)
T ss_pred HHHHHHHHHheEEEecCchhccCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHH----------
Confidence 000011233566777765544432 3334443322111 1123345567889999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 129 -------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 129 -------KHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred -------HhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45888999999999999999999 999999984 799999999 56778
Q ss_pred cccEEEEEecCCeE
Q 019066 284 LTDRARIRTYLGEL 297 (346)
Q Consensus 284 ~aDri~v~l~~G~i 297 (346)
+||++++ |++|++
T Consensus 202 ~~d~i~~-l~~G~~ 214 (214)
T cd03292 202 TRHRVIA-LERGKL 214 (214)
T ss_pred hCCEEEE-EeCCcC
Confidence 9999965 999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=290.25 Aligned_cols=199 Identities=14% Similarity=0.179 Sum_probs=152.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++... .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~~~~~-~~---l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~~~~ 75 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDAS-FT---LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-----VKSGEIFYNNQAITD 75 (269)
T ss_pred CceEEEEEEEEEcCCCCC-cc---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCc
Confidence 457999999999975321 14 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. .....++.++|++|++. .+.+. ++.+|+.++.... ........+++.++++.+++.+
T Consensus 76 ~----~~~~~~~~i~~v~q~~~~~~~~~----------~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------ 134 (269)
T PRK13648 76 D----NFEKLRKHIGIVFQNPDNQFVGS----------IVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLE------ 134 (269)
T ss_pred C----CHHHHHhheeEEEeChHHhcccc----------cHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCch------
Confidence 0 00111345677777753 23222 2333333322111 1123344567889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+||+|||||++||||| ||||++||. |.|+|++||
T Consensus 135 -----------~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 135 -----------RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred -----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 45888999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+.. |||+++ |++|++++.|+++++...
T Consensus 204 ~~~~~-~d~i~~-l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 204 SEAME-ADHVIV-MNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred hHHhc-CCEEEE-EECCEEEEecCHHHHhcC
Confidence 45655 999975 999999999999888665
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=282.75 Aligned_cols=193 Identities=17% Similarity=0.239 Sum_probs=151.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|++ . ..++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~~--~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~-- 65 (232)
T PRK10771 1 MLKLTDITWLYHH--L------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-----PASGSLTLNGQDHTT-- 65 (232)
T ss_pred CeEEEEEEEEECC--c------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCeecCc--
Confidence 4899999999964 2 336999999999999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...+.++ ++.+|+.++.... .......++++.++++.+++.+
T Consensus 66 ----~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 121 (232)
T PRK10771 66 ----TPPSRRPVSMLFQENNLFSHL----------TVAQNIGLGLNPG-LKLNAAQREKLHAIARQMGIED--------- 121 (232)
T ss_pred ----CChhhccEEEEecccccccCC----------cHHHHHhcccccc-cCCCHHHHHHHHHHHHHcCcHH---------
Confidence 111133566777765444332 3444444332110 0012334567899999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 122 --------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~ 193 (232)
T PRK10771 122 --------LLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA 193 (232)
T ss_pred --------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 46899999999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
..+||++++ |++|++++.|++++++..+
T Consensus 194 ~~~~d~i~~-l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 194 ARIAPRSLV-VADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCh
Confidence 889999965 9999999999998887654
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=283.83 Aligned_cols=203 Identities=17% Similarity=0.234 Sum_probs=160.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~i~~l~~~~~~~~---i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~i~g~~~~~--- 66 (237)
T TIGR00968 1 IEIANISKRFGSFQ---A---LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-----PDSGRIRLNGQDATR--- 66 (237)
T ss_pred CEEEEEEEEECCee---e---eeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc---
Confidence 57999999997543 3 777999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++++...+.++ +.+|+.+ ..... ........+.+.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~t~~enl~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (237)
T TIGR00968 67 ---VHARDRKIGFVFQHYALFKHLTVRDNIAF-----------GLEIR-KHPKAKIKARVEELLELVQLEG--------- 122 (237)
T ss_pred ---CChhhcCEEEEecChhhccCCcHHHHHHh-----------HHHhc-CCCHHHHHHHHHHHHHHcCCHh---------
Confidence 111234567777776555432 4554432 22111 1112334567789999999976
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++.+.+||+||+||++||||| ||||++||. ++|+|++|| +.+
T Consensus 123 --------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~ 194 (237)
T TIGR00968 123 --------LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA 194 (237)
T ss_pred --------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 46888999999999999999999 999999983 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.++||++++ |++|++++.|++++++..+.++++..++.
T Consensus 195 ~~~~d~i~~-l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 232 (237)
T TIGR00968 195 MEVADRIVV-MSNGKIEQIGSPDEVYDHPANPFVMSFLG 232 (237)
T ss_pred HhhcCEEEE-EECCEEEEecCHHHHHcCCCcHHHHHhcc
Confidence 889999975 99999999999999988777666665554
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=282.70 Aligned_cols=190 Identities=17% Similarity=0.185 Sum_probs=144.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 ~l~~~~l~~~~~~~~~--~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~~~ 70 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQ--A---LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-----PSAGKIWFSGHDITRLK 70 (222)
T ss_pred CEEEEeeEEEecCCCe--E---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccCC
Confidence 4899999999943222 4 777999999999999999999999999999999999 99999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|+...+..+ ++.+|+.++.... .....+..+++.++++.+++.+
T Consensus 71 -~~~~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 129 (222)
T PRK10908 71 -NREVPFLRRQIGMIFQDHHLLMDR----------TVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLD--------- 129 (222)
T ss_pred -hhHHHHHHhheEEEecCccccccc----------cHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 000011234567777776543332 3334443322111 1123344567788999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 130 --------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 130 --------KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred --------hhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5788
Q ss_pred ccccEEEEEecCCeEee
Q 019066 283 SLTDRARIRTYLGELLG 299 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~ 299 (346)
.+||++++ |++|+++.
T Consensus 202 ~~~d~i~~-l~~G~i~~ 217 (222)
T PRK10908 202 RRSYRMLT-LSDGHLHG 217 (222)
T ss_pred HhCCEEEE-EECCEEcc
Confidence 89999965 99999865
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=290.12 Aligned_cols=195 Identities=13% Similarity=0.122 Sum_probs=151.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 2 ~l~~~~l~~~~~~~~---i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~ 70 (255)
T PRK11231 2 TLRTENLTVGYGTKR---I---LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-----PQSGTVFLGDKPISMLS 70 (255)
T ss_pred EEEEEeEEEEECCEE---E---EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCCcEEEECCEEhHHCC
Confidence 589999999997532 4 777999999999999999999999999999999999 99999999998864110
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhh---ccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
. ...++.++|++|+...+.++ +.+|+ .++... ..........+++.++++.+++.+
T Consensus 71 ---~-~~~~~~i~~~~q~~~~~~~~tv~~~i-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 130 (255)
T PRK11231 71 ---S-RQLARRLALLPQHHLTPEGITVRELV-----------AYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH----- 130 (255)
T ss_pred ---H-HHHhhheEEecccCCCCCCccHHHHH-----------HhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-----
Confidence 0 01123467777776544332 44443 332110 000112334567888999999976
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++||
T Consensus 131 ------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 131 ------------LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred ------------HHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46889999999999999999999 999999984 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.+.++||++++ |++|+++..|++++++.
T Consensus 199 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 199 NQASRYCDHLVV-LANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCEEEE-EECCeEEEEcCHHHhcC
Confidence 568889999975 99999999998887753
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=283.16 Aligned_cols=196 Identities=17% Similarity=0.225 Sum_probs=141.2
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+++|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~ 72 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKA---LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-----PTSGSIIFDGKDLLKL 72 (228)
T ss_pred CeEEEeeeEeccCCCcceee---ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcccc
Confidence 478999999997541 0124 667999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHH-HHHHHHHcCCCcccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNR-MRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~-~~~~l~~~~l~~~~~~~ 225 (346)
. .......++.++|++|+.. .+..+ ++.+|+.++.............++ +.++++.+++...
T Consensus 73 ~-~~~~~~~~~~i~~~~q~~~~~~~~~~----------tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---- 137 (228)
T cd03257 73 S-RRLRKIRRKEIQMVFQDPMSSLNPRM----------TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEE---- 137 (228)
T ss_pred c-hhhHHHhhccEEEEecCchhhcCCcC----------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChh----
Confidence 0 0000112345677777752 22222 333443332211111111122222 3578899998531
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 138 ------------~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 205 (228)
T cd03257 138 ------------VLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD 205 (228)
T ss_pred ------------HhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 35888999999999999999999 999999984 689999999
Q ss_pred -hhhhccccEEEEEecCCeEeecC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g 301 (346)
+.+..+||++++ |++|++++.|
T Consensus 206 ~~~~~~~~d~i~~-l~~G~i~~~g 228 (228)
T cd03257 206 LGVVAKIADRVAV-MYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCeEEE-EeCCEEEecC
Confidence 567789999964 9999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=292.42 Aligned_cols=207 Identities=14% Similarity=0.160 Sum_probs=154.7
Q ss_pred CcEEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 69 SLTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..|+++||+++|++... ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~ 76 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKA---LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-----SETGQTIVGDYAIP 76 (289)
T ss_pred ceEEEEEEEEEeCCCCccccce---eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcc
Confidence 35899999999975420 114 777999999999999999999999999999999999 99999999998864
Q ss_pred Ccc-cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTY-FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~-~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
... ........++.++|++|++.. .++..++.+|+.++.... ........+++.++++.+++...
T Consensus 77 ~~~~~~~~~~~~~~~i~~v~q~~~~---------~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~---- 142 (289)
T PRK13645 77 ANLKKIKEVKRLRKEIGLVFQFPEY---------QLFQETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPED---- 142 (289)
T ss_pred ccccccccHHHHhccEEEEEeCcch---------hhhhhHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh----
Confidence 100 000011113356677666421 122235566665543211 11233445677889999999531
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. ++|||++||
T Consensus 143 ------------~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 143 ------------YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45888999999999999999999 999999984 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+.+.++||++++ |++|++++.|++++++..+
T Consensus 211 ~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~ 242 (289)
T PRK13645 211 MDQVLRIADEVIV-MHEGKVISIGSPFEIFSNQ 242 (289)
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 567889999965 9999999999988876543
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=291.87 Aligned_cols=198 Identities=13% Similarity=0.090 Sum_probs=152.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~ 73 (265)
T PRK10253 5 VARLRGEQLTLGYGKYT---V---AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-----PAHGHVWLDGEHIQH 73 (265)
T ss_pred ccEEEEEEEEEEECCEE---E---eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEEhhh
Confidence 45799999999997532 4 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc---cCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
.. . ...++.++|++|+...+... ++.+|+.++.... ........++++.++++.+++.+
T Consensus 74 ~~---~-~~~~~~i~~v~q~~~~~~~~----------tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---- 135 (265)
T PRK10253 74 YA---S-KEVARRIGLLAQNATTPGDI----------TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH---- 135 (265)
T ss_pred CC---H-HHHhhheEEeeccCcCCCCC----------cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH----
Confidence 00 0 01123567777776544332 2333333221000 00011234567889999999976
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++||
T Consensus 136 -------------~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH 202 (265)
T PRK10253 136 -------------LADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202 (265)
T ss_pred -------------HhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46889999999999999999999 999999983 689999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.+.++||++++ |++|++++.|++++++.
T Consensus 203 ~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 203 DLNQACRYASHLIA-LREGKIVAQGAPKEIVT 233 (265)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEeCCHHHHhh
Confidence 568899999965 99999999999887654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=290.36 Aligned_cols=204 Identities=16% Similarity=0.179 Sum_probs=152.0
Q ss_pred EEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||+++|++... ..+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~---l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~~ 74 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRA---LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-----PTQGSVRVDDTLITST 74 (280)
T ss_pred EEEEEEEEEcCCCCccccce---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccc
Confidence 899999999975320 124 777999999999999999999999999999999999 9999999999987511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.........++.++|++|+... .++..++.+|+.++.... .......++++.++++.+++.+.
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~---------~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------- 137 (280)
T PRK13649 75 SKNKDIKQIRKKVGLVFQFPES---------QLFEETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISES------- 137 (280)
T ss_pred ccccCHHHHHhheEEEeeChhh---------hhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChh-------
Confidence 0000001123356777776410 111123444444332111 11233445678889999999742
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. +.|||++|| +.+
T Consensus 138 ---------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~ 208 (280)
T PRK13649 138 ---------LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDV 208 (280)
T ss_pred ---------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHH
Confidence 35788999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
..+||++++ |++|++++.|++++++..
T Consensus 209 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 209 ANYADFVYV-LEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHhcC
Confidence 889999965 999999999999888664
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=291.07 Aligned_cols=199 Identities=14% Similarity=0.173 Sum_probs=153.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.....+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~---l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~i~~~- 74 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQ---LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-----EFEGKVKIDGELLTAE- 74 (277)
T ss_pred eEEEEEEEEEcCCCCcCee---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEECCcC-
Confidence 6999999999974321124 777999999999999999999999999999999999 9999999999987511
Q ss_pred cccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|++. .+.. .++.+|+.++.... ........+++.++++.+++.+
T Consensus 75 ---~~~~~~~~i~~v~q~~~~~~~~----------~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------- 132 (277)
T PRK13642 75 ---NVWNLRRKIGMVFQNPDNQFVG----------ATVEDDVAFGMENQ-GIPREEMIKRVDEALLAVNMLD-------- 132 (277)
T ss_pred ---CHHHHhcceEEEEECHHHhhcc----------CCHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHh--------
Confidence 00111345677777652 2222 24444444332211 1123444567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
+.++++.+|||||+||++||||| ||||++||. |.|+|++|| +.
T Consensus 133 ---------~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 133 ---------FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred ---------HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 46888999999999999999999 999999983 789999999 45
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+. .||++++ |++|++++.|++++++..+
T Consensus 204 ~~-~~d~i~~-l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 204 AA-SSDRILV-MKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HH-hCCEEEE-EECCEEEEeCCHHHHhcCH
Confidence 55 6999965 9999999999999887653
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=281.47 Aligned_cols=185 Identities=19% Similarity=0.205 Sum_probs=143.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~---~---l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (213)
T cd03262 1 IEIKNLHKSFGDFH---V---LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-----PDSGTIIIDGLKLTDD-- 67 (213)
T ss_pred CEEEEEEEEECCeE---e---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCcc--
Confidence 57899999997632 4 667999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|+...+..+ +.+|+.+.... .........++++.++++.+++.+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~l~~--------- 127 (213)
T cd03262 68 KKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIK-----------VKGMSKAEAEERALELLEKVGLAD--------- 127 (213)
T ss_pred chhHHHHHhcceEEecccccCCCCcHHHHHHhHHHH-----------hcCCCHHHHHHHHHHHHHHcCCHh---------
Confidence 001111234677888876655433 55554432211 011122344567888999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
.+++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 128 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~ 199 (213)
T cd03262 128 --------KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAR 199 (213)
T ss_pred --------HhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 46888999999999999999999 999999984 789999999 5688
Q ss_pred ccccEEEEEecCCeE
Q 019066 283 SLTDRARIRTYLGEL 297 (346)
Q Consensus 283 ~~aDri~v~l~~G~i 297 (346)
++||++++ |++|++
T Consensus 200 ~~~d~i~~-l~~g~i 213 (213)
T cd03262 200 EVADRVIF-MDDGRI 213 (213)
T ss_pred HhCCEEEE-EeCCcC
Confidence 89999975 999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=289.02 Aligned_cols=195 Identities=13% Similarity=0.087 Sum_probs=150.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 ~l~~~~l~~~~~~~~---i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~G~i~~~g~~~~~~~ 70 (258)
T PRK13548 2 MLEARNLSVRLGGRT---L---LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-----PDSGEVRLNGRPLADWS 70 (258)
T ss_pred eEEEEeEEEEeCCee---e---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEEcccCC
Confidence 689999999997633 3 777999999999999999999999999999999999 99999999998864100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ...++.++|++|+...+..+ ++.+|+.++..... ......++++.++++.+++.+
T Consensus 71 ---~-~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~--------- 126 (258)
T PRK13548 71 ---P-AELARRRAVLPQHSSLSFPF----------TVEEVVAMGRAPHG-LSRAEDDALVAAALAQVDLAH--------- 126 (258)
T ss_pred ---H-HHhhhheEEEccCCcCCCCC----------CHHHHHHhhhcccC-CCcHHHHHHHHHHHHHcCCHh---------
Confidence 0 01123456777765433222 34444443321111 112334567888999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------------CccccCCCC-----------------CceEEEEe
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVVVT 277 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~-----------------g~tviiiT 277 (346)
..++++.+||||||||++||||| ||||++||. +.|||++|
T Consensus 127 --------~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s 198 (258)
T PRK13548 127 --------LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVL 198 (258)
T ss_pred --------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 46888999999999999999976 999999884 68999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
| +.+..+||++++ |++|++++.|++++++.
T Consensus 199 H~~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 199 HDLNLAARYADRIVL-LHQGRLVADGTPAEVLT 230 (258)
T ss_pred CCHHHHHHhcCEEEE-EECCEEEeeCCHHHHhC
Confidence 9 567889999965 99999999998887754
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=298.42 Aligned_cols=178 Identities=12% Similarity=0.129 Sum_probs=144.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++... . ...++.++|++|+...+
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~----~-~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-----PTSGTARVAGYDVVRE----P-RKVRRSIGIVPQYASVD 78 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccC----H-HHHHhhcEEecCCCCCC
Confidence 777999999999999999999999999999999999 9999999999987510 0 11134578888877665
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
..+ +.+|+.++.. .. .......++++.++++.+++.+ ..++++.+|||||
T Consensus 79 ~~~tv~e~l~~~~~-----------~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgG~ 129 (302)
T TIGR01188 79 EDLTGRENLEMMGR-----------LY-GLPKDEAEERAEELLELFELGE-----------------AADRPVGTYSGGM 129 (302)
T ss_pred CCCcHHHHHHHHHH-----------Hc-CCCHHHHHHHHHHHHHHcCChh-----------------HhCCchhhCCHHH
Confidence 554 5665543221 11 1123445667889999999987 4688999999999
Q ss_pred HHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCc
Q 019066 251 QYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 251 rQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
|||++||||| ||||++||+ |.|||++|| +.+.++||++++ |++|+++..|++
T Consensus 130 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~-l~~G~i~~~g~~ 208 (302)
T TIGR01188 130 RRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAI-IDHGRIIAEGTP 208 (302)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE-EECCEEEEECCH
Confidence 9999999999 999999984 799999999 678899999975 999999999999
Q ss_pred cccccC
Q 019066 304 KQIFDI 309 (346)
Q Consensus 304 ~~l~~~ 309 (346)
+++...
T Consensus 209 ~~l~~~ 214 (302)
T TIGR01188 209 EELKRR 214 (302)
T ss_pred HHHHHh
Confidence 887653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=285.28 Aligned_cols=208 Identities=13% Similarity=0.067 Sum_probs=151.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc--cCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~--~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~~ 69 (243)
T TIGR01978 1 LKIKDLHVSVEDKE---I---LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE-----VTSGTILFKGQDLLEL 69 (243)
T ss_pred CeEeeEEEEECCEE---E---EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCcceEEECCEecCCC
Confidence 57999999997532 4 77799999999999999999999999999999994 6 8999999999987511
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .....+..++|++|+...+.++ +.+++.+...... . +.. ..........+++.++++.+++.+.
T Consensus 70 ~---~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~-~--~~~--~~~~~~~~~~~~~~~~l~~~~l~~~------ 135 (243)
T TIGR01978 70 E---PDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARR-S--ARG--EEPLDLLDFLKLLKAKLALLGMDEE------ 135 (243)
T ss_pred C---HHHhhccceEeeeccccccCCcCHHHHHHHHHHHhh-c--ccc--cccccHHHHHHHHHHHHHHcCCchh------
Confidence 1 0011123467778877665554 5555443221100 0 000 0001123345678899999999742
Q ss_pred eeeeeechhhhcccCCC-CCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++.+. +||||||||++||||| ||||++||. |.|||++|| +
T Consensus 136 ----------~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~ 205 (243)
T TIGR01978 136 ----------FLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR 205 (243)
T ss_pred ----------hcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH
Confidence 2466776 5999999999999999 999999984 789999999 5
Q ss_pred hhhcc-ccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 280 DLLSL-TDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 280 ~~~~~-aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
.+..+ ||++++ |++|++++.|+++++.....+.|
T Consensus 206 ~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~ 240 (243)
T TIGR01978 206 LLNYIKPDYVHV-LLDGRIVKSGDVELAKELEEKGY 240 (243)
T ss_pred HHHhhcCCeEEE-EeCCEEEEecCHHHhccccccCc
Confidence 67777 899964 99999999999876544333333
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=281.41 Aligned_cols=200 Identities=15% Similarity=0.194 Sum_probs=157.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~---i---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--- 66 (232)
T cd03300 1 IELENVSKFYGGFV---A---LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-----PTSGEILLDGKDITN--- 66 (232)
T ss_pred CEEEeEEEEeCCee---e---eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEEcCc---
Confidence 57899999997642 4 777999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.+++++|+...+.++ +.+|+.+ +.... .......++++.++++.+++.+
T Consensus 67 ---~~~~~~~i~~~~q~~~~~~~~t~~~nl~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 122 (232)
T cd03300 67 ---LPPHKRPVNTVFQNYALFPHLTVFENIAF-----------GLRLK-KLPKAEIKERVAEALDLVQLEG--------- 122 (232)
T ss_pred ---CChhhcceEEEecccccCCCCcHHHHHHH-----------HHHhc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 111234567888776655443 5555432 21111 1123345567889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
.+++.+.+||+||+||++||||| ||||++||. |.|+|++|| ..+
T Consensus 123 --------~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 123 --------YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA 194 (232)
T ss_pred --------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 46888999999999999999999 999999983 689999999 467
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 317 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 317 (346)
..+||++++ |++|++++.|++++++..+.++.++.
T Consensus 195 ~~~~d~i~~-l~~G~~~~~~~~~~~~~~~~~~~~~~ 229 (232)
T cd03300 195 LTMSDRIAV-MNKGKIQQIGTPEEIYEEPANRFVAD 229 (232)
T ss_pred HHhcCEEEE-EECCEEEecCCHHHHHhCCchHHHHH
Confidence 889999965 99999999999988877655444333
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=289.89 Aligned_cols=218 Identities=15% Similarity=0.190 Sum_probs=159.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~~~~---~---l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFL---A---LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEeCCeE---E---EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 55899999999997532 4 77799999999999999999999999999999998621111268999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . .....++.++|++|+...+.. ++.+|+.++..... . ....++.+.++++.+++...+.
T Consensus 92 ~~-~-~~~~~~~~i~~v~q~~~l~~~-----------tv~~nl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l~---- 152 (274)
T PRK14265 92 SQ-I-NSVKLRRQVGMVFQRPNPFPK-----------SIYENIAFAPRANG-Y-KGNLDELVEDSLRRAAIWEEVK---- 152 (274)
T ss_pred cc-c-hhHHHhhcEEEEccCCccccc-----------cHHHHHHhHHHhcC-c-hHHHHHHHHHHHHHcccchhhH----
Confidence 00 0 011123456777776544322 33444443321111 1 1123345677888888753220
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..+++++.+|||||+||++||||| ||||++||. +.|||++|| +.+
T Consensus 153 ---------~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~ 223 (274)
T PRK14265 153 ---------DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQA 223 (274)
T ss_pred ---------HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 135788999999999999999999 999999984 789999999 578
Q ss_pred hccccEEEEEec---------CCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTY---------LGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~---------~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.++|||+++ |+ +|++++.|++++++..+.+++++.++.
T Consensus 224 ~~~~d~i~~-l~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~ 270 (274)
T PRK14265 224 SRVADWTAF-FNTEIDEYGKRRGKLVEFSPTEQMFGSPQTKEAREYIS 270 (274)
T ss_pred HHhCCEEEE-EecccccccccCceEEEeCCHHHHHhCCCCHHHHHHhh
Confidence 899999975 87 899999999999998888777665543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=281.01 Aligned_cols=196 Identities=17% Similarity=0.263 Sum_probs=155.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 l~~~~l~~~~~~~----~---l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-----p~~G~v~i~g~~~~~--- 65 (235)
T cd03299 1 LKVENLSKDWKEF----K---LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-----PDSGKILLNGKDITN--- 65 (235)
T ss_pred CeeEeEEEEeCCc----e---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEcCc---
Confidence 5789999999752 3 777999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.+++++|+...+..+ +.+|+. ++.... ........+++.++++.+++.+
T Consensus 66 ---~~~~~~~i~~~~q~~~~~~~~t~~e~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 121 (235)
T cd03299 66 ---LPPEKRDISYVPQNYALFPHMTVYKNIA-----------YGLKKR-KVDKKEIERKVLEIAEMLGIDH--------- 121 (235)
T ss_pred ---CChhHcCEEEEeecCccCCCccHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 111234667888776555333 444443 222111 1123445667889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 122 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~ 193 (235)
T cd03299 122 --------LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193 (235)
T ss_pred --------HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 46888999999999999999999 999999983 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
..+||++++ |++|++++.|+++++...+..+.
T Consensus 194 ~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~ 225 (235)
T cd03299 194 WALADKVAI-MLNGKLIQVGKPEEVFKKPKNEF 225 (235)
T ss_pred HHhCCEEEE-EECCEEEEecCHHHHHhCcccHH
Confidence 889999975 99999999999988877654443
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=275.59 Aligned_cols=196 Identities=16% Similarity=0.170 Sum_probs=163.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+|+|+... + |+++|++|++|.+++||||||||||||+.+++++.+ .++|+|+++|.++..
T Consensus 1 MI~i~nv~K~y~~~~---v---l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~~~~-- 67 (252)
T COG4604 1 MITIENVSKSYGTKV---V---LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLELTS-- 67 (252)
T ss_pred CeeehhhhHhhCCEE---e---eccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeeeccc--
Confidence 689999999998753 3 677999999999999999999999999999999999 999999999999861
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhH-HHHHhhhhcch-hhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~-~~v~~~i~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+.-++.........|.-.+.. .+|++-+.||. ...++....+.+..+.++++.++|.+
T Consensus 68 -------------~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~------- 127 (252)
T COG4604 68 -------------TPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED------- 127 (252)
T ss_pred -------------CChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-------
Confidence 222222222223333333333 38888888884 33445556788899999999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+.++|..+||||||||+-||..| |||..+||- |+|+++|-| +
T Consensus 128 ----------l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN 197 (252)
T COG4604 128 ----------LSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN 197 (252)
T ss_pred ----------hHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc
Confidence 67999999999999999999999 999999983 999999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++..++|+|+ -|++|+++..|++++++..
T Consensus 198 fAS~YsD~IV-AlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 198 FASCYSDHIV-ALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred HHHhhhhhee-eecCCEEEecCCHHHhcCH
Confidence 8999999995 5999999999999999865
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=346.28 Aligned_cols=218 Identities=10% Similarity=0.106 Sum_probs=161.0
Q ss_pred hhhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
.+..++.++++.+++.... ....|+++||+|+|+......+ |+|+||+|++||++||+||||||||||++
T Consensus 353 ~a~~ri~~ii~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~v---L~~isl~i~~Ge~vaIvG~SGsGKSTLl~ 429 (1466)
T PTZ00265 353 EATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEI---YKDLNFTLTEGKTYAFVGESGCGKSTILK 429 (1466)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCccCCCCCcEEEEEEEEEcCCCCCCce---eccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 4456788888766543211 1125999999999975422225 66699999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEE-CceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc-
Q 019066 121 RISKVFENDKFASERAQVTY-NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR- 198 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~-~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~- 198 (346)
+|+|+|+ |++|+|++ +|.++... .....|+.+++++|++..|.+ ++.+|+.++.....
T Consensus 430 lL~gl~~-----p~~G~I~i~~g~~i~~~----~~~~lr~~Ig~V~Q~~~LF~~-----------TI~eNI~~g~~~~~~ 489 (1466)
T PTZ00265 430 LIERLYD-----PTEGDIIINDSHNLKDI----NLKWWRSKIGVVSQDPLLFSN-----------SIKNNIKYSLYSLKD 489 (1466)
T ss_pred HHHHhcc-----CCCCeEEEeCCcchhhC----CHHHHHHhccEecccccchhc-----------cHHHHHHhcCCCccc
Confidence 9999999 99999999 56776410 001113455666666555544 44445444321000
Q ss_pred -------------------------------------------------CCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 199 -------------------------------------------------RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 199 -------------------------------------------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++++.++++.+++++++..+|+||
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~ 569 (1466)
T PTZ00265 490 LEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKY 569 (1466)
T ss_pred cchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCcccc
Confidence 0001123467889999999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech-hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG-DLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~-~~~ 282 (346)
+|.||++ +.+||||||||++||||| |||||+||. |+|+|+|||+ ...
T Consensus 570 dT~vg~~------g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i 643 (1466)
T PTZ00265 570 ETLVGSN------ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI 643 (1466)
T ss_pred CceeCCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH
Confidence 9999998 459999999999999999 999999883 6899999992 334
Q ss_pred ccccEEEEEecCC
Q 019066 283 SLTDRARIRTYLG 295 (346)
Q Consensus 283 ~~aDri~v~l~~G 295 (346)
+.||+|++ |++|
T Consensus 644 ~~aD~Iiv-l~~g 655 (1466)
T PTZ00265 644 RYANTIFV-LSNR 655 (1466)
T ss_pred HhCCEEEE-EeCC
Confidence 67999965 9886
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=282.36 Aligned_cols=189 Identities=13% Similarity=0.152 Sum_probs=144.3
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 68 (230)
T TIGR03410 1 LEVSNLNVYYGQSH---I---LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-----VKSGSIRLDGEDITKLP- 68 (230)
T ss_pred CEEEeEEEEeCCeE---E---ecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCCCC-
Confidence 57999999997532 4 677999999999999999999999999999999999 99999999998875110
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcC-CCcccccccce
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVNF 228 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~ 228 (346)
.....++.++|++|+...+..+ +.+|+ .++..... ....+.+.++++.++ +..
T Consensus 69 --~~~~~~~~i~~~~q~~~~~~~~tv~~~l-----------~~~~~~~~----~~~~~~~~~~l~~~~~l~~-------- 123 (230)
T TIGR03410 69 --PHERARAGIAYVPQGREIFPRLTVEENL-----------LTGLAALP----RRSRKIPDEIYELFPVLKE-------- 123 (230)
T ss_pred --HHHHHHhCeEEeccCCcccCCCcHHHHH-----------HHHHHhcC----cchHHHHHHHHHHHHhHHH--------
Confidence 0011134567777776555432 44444 33221110 111234566677776 444
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.
T Consensus 124 ---------~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 124 ---------MLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF 194 (230)
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 45888999999999999999999 999999984 689999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCcccc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+..+||++++ |++|++++.|+++++
T Consensus 195 ~~~~~d~v~~-l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 195 ARELADRYYV-MERGRVVASGAGDEL 219 (230)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHc
Confidence 8889999975 999999999998776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=288.02 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=150.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 2 l~~~~l~~~~~~~~---i---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~- 69 (256)
T TIGR03873 2 LRLSRVSWSAGGRL---I---VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-----PDAGTVDLAGVDLHGLS- 69 (256)
T ss_pred ceEEeEEEEECCEE---E---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCEEcccCC-
Confidence 68999999997532 4 777999999999999999999999999999999999 99999999999875110
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ...++.++|++|+...+..+ +.+|+.+..... ............+++.++++.+++.+
T Consensus 70 --~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 129 (256)
T TIGR03873 70 --R-RARARRVALVEQDSDTAVPLTVRDVVALGRIPH--------RSLWAGDSPHDAAVVDRALARTELSH--------- 129 (256)
T ss_pred --H-HHHhhheEEecccCccCCCCCHHHHHHhcchhh--------hhhccCCCHHHHHHHHHHHHHcCcHh---------
Confidence 0 11123467777775433322 455543321100 00000111234467889999999976
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 130 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (256)
T TIGR03873 130 --------LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAA 201 (256)
T ss_pred --------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 46889999999999999999999 999999984 789999999 5677
Q ss_pred ccccEEEEEecCCeEeecCCcccccc
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
.+||++++ |++|++++.|++++++.
T Consensus 202 ~~~d~i~~-l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 202 SYCDHVVV-LDGGRVVAAGPPREVLT 226 (256)
T ss_pred HhCCEEEE-EeCCCEEEecCHHHhhC
Confidence 89999965 99999999998877643
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=287.12 Aligned_cols=215 Identities=17% Similarity=0.194 Sum_probs=159.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|.-...
T Consensus 8 ~~~i~~~~~~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-----~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 8 EDVFNISRLYLYINDKA---I---LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-----IYDSKIKVDGKVLYF 76 (257)
T ss_pred hhheeeeeEEEecCCce---e---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCcCceeEcCEEEEC
Confidence 56899999999997643 4 677999999999999999999999999999999999 999877777642110
Q ss_pred cccccccc--cCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFLQEYT--IPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~~~~~--~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
........ ..++.++|++|+...+.++ +.+|+. ++..........+.++++.++++.+++.+.+.
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 144 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIA-----------YPLKSHGIKEKREIKKIVEECLRKVGLWKEVY- 144 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHH-----------HHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-
Confidence 00000001 1134567777766555443 455443 32211111122345567889999999964210
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-- 278 (346)
...++.+..||+|||||++||||| ||||++||. +.|+|++||
T Consensus 145 ------------~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~ 212 (257)
T PRK14246 145 ------------DRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNP 212 (257)
T ss_pred ------------hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCH
Confidence 034778999999999999999999 999999984 689999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+.+..+||++++ |++|++++.|++++++..|.+++++.|
T Consensus 213 ~~~~~~~d~v~~-l~~g~i~~~g~~~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 213 QQVARVADYVAF-LYNGELVEWGSSNEIFTSPKNELTEKY 251 (257)
T ss_pred HHHHHhCCEEEE-EECCEEEEECCHHHHHhCCCcHHHHHH
Confidence 567789999965 999999999999999988877776554
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=286.92 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=158.7
Q ss_pred CcEEEeeeEEEeCC--------CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 69 SLTDAKNKILSYTP--------GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 69 ~~l~~~~l~~~y~~--------~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
++|+++||++.|+. +.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~--i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~sG~i~~ 71 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQT--V---LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-----PSQGNVSW 71 (268)
T ss_pred ceEEEeceEEEecCCccccccCcee--e---EeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEE
Confidence 46999999999973 222 4 667999999999999999999999999999999999 99999999
Q ss_pred CceeCCCcccccccccCCCCccceeecccc-c-ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcC
Q 019066 141 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRS-L-SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 217 (346)
Q Consensus 141 ~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~-~-~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (346)
+|+++.... .......++.++|++|+... + ... +.+++. +...............++.++++.++
T Consensus 72 ~g~~~~~~~-~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~-----------~~~~~~~~~~~~~~~~~~~~~l~~~g 139 (268)
T PRK10419 72 RGEPLAKLN-RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR-----------EPLRHLLSLDKAERLARASEMLRAVD 139 (268)
T ss_pred CCEeccccC-hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHH-----------HHHHhhccCCHHHHHHHHHHHHHHcC
Confidence 999874110 00111123467788887531 2 112 333332 21110111123344567889999999
Q ss_pred CCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------Cc
Q 019066 218 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DK 271 (346)
Q Consensus 218 l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~ 271 (346)
+... ..++++.+|||||+||++||||| ||||++||. +.
T Consensus 140 l~~~----------------~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 203 (268)
T PRK10419 140 LDDS----------------VLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT 203 (268)
T ss_pred CChh----------------HhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCc
Confidence 9732 35788999999999999999999 999999983 78
Q ss_pred eEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 272 PVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 272 tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|+|++|| +.+..+||++++ |++|++++.|++++++. +.++++..++.
T Consensus 204 tiiivsH~~~~i~~~~d~i~~-l~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 252 (268)
T PRK10419 204 ACLFITHDLRLVERFCQRVMV-MDNGQIVETQPVGDKLT-FSSPAGRVLQN 252 (268)
T ss_pred EEEEEECCHHHHHHhCCEEEE-EECCEEeeeCChhhccC-CCCHHHHHHHH
Confidence 9999999 578889999975 99999999999999874 56666655554
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=278.96 Aligned_cols=194 Identities=18% Similarity=0.179 Sum_probs=146.1
Q ss_pred CCcEEEeeeEEEeCCCCc-eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPGAW-IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~-~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||+++|+++.. ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~ 75 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSI---LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-----GSSGEVSLVGQPLH 75 (228)
T ss_pred CceEEEeeeEEEccCCCcceEE---EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeeEEECCEEcc
Confidence 457999999999975321 124 677999999999999999999999999999999999 99999999999875
Q ss_pred CcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
...........++.++|++|+...+..+ +.+|+.+. .... .......++++.++++.+++.+
T Consensus 76 ~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~~l~~----- 138 (228)
T PRK10584 76 QMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELP-----------ALLR-GESSRQSRNGAKALLEQLGLGK----- 138 (228)
T ss_pred cCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHH-----------HHhc-CCCHHHHHHHHHHHHHHcCCHh-----
Confidence 1110000011123567888776555443 55554332 1111 1123445678899999999986
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|||++||
T Consensus 139 ------------~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 139 ------------RLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred ------------HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45888999999999999999999 999999983 689999999
Q ss_pred -hhhhccccEEEEEecCCeEeec
Q 019066 279 -GDLLSLTDRARIRTYLGELLGI 300 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~ 300 (346)
+.+ ..||++++ |++|++++.
T Consensus 207 ~~~~-~~~d~i~~-l~~g~i~~~ 227 (228)
T PRK10584 207 LQLA-ARCDRRLR-LVNGQLQEE 227 (228)
T ss_pred HHHH-HhCCEEEE-EECCEEEec
Confidence 445 45999965 999999764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=275.59 Aligned_cols=183 Identities=17% Similarity=0.191 Sum_probs=142.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++. ..++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~~--------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-----~~~G~i~~~g~~~~~--- 64 (211)
T cd03298 1 VRLDKIRFSYGEQ--------PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-----PQSGRVLINGVDVTA--- 64 (211)
T ss_pred CEEEeEEEEeCCE--------ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEEcCc---
Confidence 5799999999642 225999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
....++.++|++|+...+.++ ++.+|+.++...... .....++++.++++.+++.+
T Consensus 65 ---~~~~~~~i~~~~q~~~~~~~~----------tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~---------- 120 (211)
T cd03298 65 ---APPADRPVSMLFQENNLFAHL----------TVEQNVGLGLSPGLK-LTAEDRQAIEVALARVGLAG---------- 120 (211)
T ss_pred ---CCHhHccEEEEecccccCCCC----------cHHHHHhcccccccC-ccHHHHHHHHHHHHHcCCHH----------
Confidence 111134567777776544332 344444433211000 11234567889999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 121 -------~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 121 -------LEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred -------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5688
Q ss_pred ccccEEEEEecCCeEeecC
Q 019066 283 SLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g 301 (346)
.+||++++ |++|++++.|
T Consensus 194 ~~~d~i~~-l~~G~i~~~~ 211 (211)
T cd03298 194 RLAQRVVF-LDNGRIAAQG 211 (211)
T ss_pred hhhCEEEE-EECCEEeecC
Confidence 89999965 9999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=278.92 Aligned_cols=183 Identities=20% Similarity=0.246 Sum_probs=137.5
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+++||+++|++... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~~~~l~~~~~~~~~-~i---l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~--- 68 (211)
T cd03225 1 ELKNLSFSYPDGAR-PA---LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-----PTSGEVLVDGKDLTKL--- 68 (211)
T ss_pred CceeEEEecCCCCe-ee---ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCEEcccC---
Confidence 47899999975211 14 677999999999999999999999999999999999 9999999999887511
Q ss_pred cccccCCCCccceeecccc-cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 152 QEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~-~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|++|+... +... ++.+|+.++.... .......++++.++++.+++.+
T Consensus 69 -~~~~~~~~i~~~~q~~~~~~~~~----------t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 126 (211)
T cd03225 69 -SLKELRRKVGLVFQNPDDQFFGP----------TVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEG---------- 126 (211)
T ss_pred -CHHHHHhhceEEecChhhhcCCC----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHh----------
Confidence 001113456777776531 2221 3334443322111 1122344567888999999986
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+..
T Consensus 127 -------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 127 -------LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred -------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 45888999999999999999999 999999984 789999999 56888
Q ss_pred cccEEEEEecCCe
Q 019066 284 LTDRARIRTYLGE 296 (346)
Q Consensus 284 ~aDri~v~l~~G~ 296 (346)
+||++++ |++|+
T Consensus 200 ~~d~i~~-l~~G~ 211 (211)
T cd03225 200 LADRVIV-LEDGK 211 (211)
T ss_pred hCCEEEE-EeCCC
Confidence 8999964 98874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=273.75 Aligned_cols=197 Identities=15% Similarity=0.151 Sum_probs=155.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+.+|++++..++.. |+++||++++||+++|+||||||||||+|.|+|-+. |++|++.++|.++.. +
T Consensus 1 mi~a~nls~~~~Gr~l------l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-----p~~G~v~~~g~~l~~-~ 68 (259)
T COG4559 1 MIRAENLSYSLAGRRL------LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-----PDSGEVTLNGVPLNS-W 68 (259)
T ss_pred CeeeeeeEEEeeccee------ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-----CCCCeEeeCCcChhh-C
Confidence 5899999999877653 777999999999999999999999999999999999 999999999998751 1
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.+.+ +. ++.+..+|+.... |+.+|.+-+.+|...++. ....+..+.+.++|..+++..
T Consensus 69 ~~~~--lA-~~raVlpQ~s~la----------FpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~-------- 127 (259)
T COG4559 69 PPEE--LA-RHRAVLPQNSSLA----------FPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG-------- 127 (259)
T ss_pred CHHH--HH-HHhhhcccCcccc----------cceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh--------
Confidence 1111 11 1124445544332 334566666666654433 222345556788999999988
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------------CccccCCCC----------------CceEEEEe
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~----------------g~tviiiT 277 (346)
+..+...+|||||||||.+||+| |||||+||- |..|+.|-
T Consensus 128 ---------la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VL 198 (259)
T COG4559 128 ---------LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVL 198 (259)
T ss_pred ---------hhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 56777889999999999999999 999999983 88999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
| +.+..+||||+ +|++||++..|++++++..
T Consensus 199 HDLNLAA~YaDriv-ll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 199 HDLNLAAQYADRIV-LLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred ccchHHHHhhheee-eeeCCeEeecCCHHHhcCH
Confidence 9 68999999996 5999999999999998764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=283.05 Aligned_cols=206 Identities=15% Similarity=0.161 Sum_probs=156.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC----CCceEEECceeC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVG 145 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p----~~G~I~~~g~~i 145 (346)
+|+++||+++| +. . + |+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++
T Consensus 4 ~l~~~~l~~~~-~~-~--i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 4 QIELRNIALQA-AQ-P--L---VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-----AGVRQTAGRVLLDGKPV 71 (254)
T ss_pred EEEEeCeEEEe-cc-c--e---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCcCCEEEECCeec
Confidence 69999999999 32 2 3 777999999999999999999999999999999998 7 999999999987
Q ss_pred CCcccccccccCCCCccceeecccc-cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~-~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
. .....++.++|++|+... +... .++.+++.+...... . ...++++.++++.+++.+..
T Consensus 72 ~------~~~~~~~~i~~v~q~~~~~~~~~---------~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~~~l~~~~-- 131 (254)
T PRK10418 72 A------PCALRGRKIATIMQNPRSAFNPL---------HTMHTHARETCLALG-K--PADDATLTAALEAVGLENAA-- 131 (254)
T ss_pred c------ccccccceEEEEecCCccccCcc---------ccHHHHHHHHHHHcC-C--ChHHHHHHHHHHHcCCCChh--
Confidence 4 112223467888888642 2110 012222221111111 1 12236788999999997621
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..+++++.+|||||+||++||||| ||||++||. |.|||++||
T Consensus 132 ------------~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH 199 (254)
T PRK10418 132 ------------RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199 (254)
T ss_pred ------------hhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 024788999999999999999999 999999983 689999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+.+..+||++++ |++|++++.|++++++..+.+++.+.++.
T Consensus 200 ~~~~~~~~~d~v~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 242 (254)
T PRK10418 200 DMGVVARLADDVAV-MSHGRIVEQGDVETLFNAPKHAVTRSLVS 242 (254)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEecCHHHHhhCCCCHHHHHHHH
Confidence 567789999965 99999999999999988776665554443
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=277.85 Aligned_cols=190 Identities=18% Similarity=0.184 Sum_probs=141.7
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+++|+++. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~ 72 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRV---LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-----PTSGEVLFNGQSLSKL 72 (221)
T ss_pred CEEEEeeeEEccCCCcceEe---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEhhhc
Confidence 378999999996431 1124 777999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.........++.++|++|+...+..+ +.+|+.+ ..... ........+++.++++.+++.+
T Consensus 73 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 133 (221)
T TIGR02211 73 SSNERAKLRNKKLGFIYQFHHLLPDFTALENVAM-----------PLLIG-KKSVKEAKERAYEMLEKVGLEH------- 133 (221)
T ss_pred CHhHHHHHHHhcEEEEecccccCCCCcHHHHHHH-----------HHHhc-CCCHHHHHHHHHHHHHHcCChh-------
Confidence 10000011124567888776554433 5555433 21111 1112334567889999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +
T Consensus 134 ----------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~ 203 (221)
T TIGR02211 134 ----------RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE 203 (221)
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 45888999999999999999999 999999983 689999999 4
Q ss_pred hhhccccEEEEEecCCeEe
Q 019066 280 DLLSLTDRARIRTYLGELL 298 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv 298 (346)
.+. .||++++ |++|+++
T Consensus 204 ~~~-~~d~v~~-l~~G~i~ 220 (221)
T TIGR02211 204 LAK-KLDRVLE-MKDGQLF 220 (221)
T ss_pred HHh-hcCEEEE-EeCCEec
Confidence 554 4899965 9999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=286.60 Aligned_cols=204 Identities=14% Similarity=0.155 Sum_probs=151.0
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC---CceEEECceeC
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVG 145 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~---~G~I~~~g~~i 145 (346)
++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++|.++
T Consensus 3 ~~l~~~nl~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQ---A---LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-----GDKSAGSHIELLGRTV 71 (262)
T ss_pred cEEEEeeEEEEeCCeE---E---EecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-----CCCCCceEEEECCEec
Confidence 4799999999997533 4 777999999999999999999999999999999998 65 59999999987
Q ss_pred CCcc-cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhc-cCCChHHHHHHHHHHHHHcCCCccc
Q 019066 146 DGTY-FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI-RRSDSSSLRNRMRCKAHKIGCEPSV 222 (346)
Q Consensus 146 ~~~~-~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~ 222 (346)
.... ........++.++|++|+...+..+ +.+|+.+.... . ...... ........++++.++++.+++.+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 144 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALG---S--TPFWRTCFSWFTREQKQRALQALTRVGMVH-- 144 (262)
T ss_pred ccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcc---c--ccchhhhcccccHHHHHHHHHHHHHcCCHH--
Confidence 4110 0000111134567777776555433 55554322100 0 000000 00012334567899999999986
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEE
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVV 276 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviii 276 (346)
..++.+.+||||||||++||||| ||||++||. |.|+|++
T Consensus 145 ---------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~ 209 (262)
T PRK09984 145 ---------------FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209 (262)
T ss_pred ---------------HHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 45888999999999999999999 999999984 6899999
Q ss_pred ec--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 277 TH--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 277 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
|| +.+..+||++++ |++|++++.|+++++
T Consensus 210 tH~~~~~~~~~d~i~~-l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 210 LHQVDYALRYCERIVA-LRQGHVFYDGSSQQF 240 (262)
T ss_pred eCCHHHHHHhCCEEEE-EECCEEEEeCCHHHh
Confidence 99 467899999975 999999999998775
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=282.80 Aligned_cols=198 Identities=14% Similarity=0.208 Sum_probs=148.6
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~~~~~~~--~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 70 (229)
T cd03254 3 IEFENVNFSYDEKKP--V---LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-----PQKGQILIDGIDIRDI-- 70 (229)
T ss_pred EEEEEEEEecCCCCc--c---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCEeHHHc--
Confidence 799999999974332 3 777999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|++| +..++..++.+|+.+.... . ...++.++++.+++......+|+|+.
T Consensus 71 --~~~~~~~~i~~~~q-----------~~~~~~~tv~~~~~~~~~~-----~--~~~~~~~~~~~~~l~~~~~~~~~~~~ 130 (229)
T cd03254 71 --SRKSLRSMIGVVLQ-----------DTFLFSGTIMENIRLGRPN-----A--TDEEVIEAAKEAGAHDFIMKLPNGYD 130 (229)
T ss_pred --CHHHHhhhEEEecC-----------CchhhhhHHHHHHhccCCC-----C--CHHHHHHHHHHhChHHHHHhCccccc
Confidence 00001223444444 4444445677777654221 0 12345566777777665655666666
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.+ ++++.+||||||||++||||| ||||++||. +.|+|++|| +.+. .
T Consensus 131 ~~~------~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~ 203 (229)
T cd03254 131 TVL------GENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-N 203 (229)
T ss_pred CHh------hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-h
Confidence 543 445789999999999999999 999999983 789999999 4554 5
Q ss_pred ccEEEEEecCCeEeecCCcccccc
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
||++++ |++|++++.|+.++++.
T Consensus 204 ~d~i~~-l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 204 ADKILV-LDDGKIIEEGTHDELLA 226 (229)
T ss_pred CCEEEE-EeCCeEEEeCCHHHHHh
Confidence 999965 99999999988777654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=284.84 Aligned_cols=215 Identities=17% Similarity=0.202 Sum_probs=157.7
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
-+++||+++|++.. + |+++||+|.+||+++|+||||||||||+++|+|+++..+..|++|+|.++|+++....
T Consensus 6 ~~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~- 78 (251)
T PRK14244 6 ASVKNLNLWYGSKQ---I---LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD- 78 (251)
T ss_pred EEeeeEEEEECCee---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc-
Confidence 47899999997532 4 7779999999999999999999999999999999751111146999999998864110
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
......++.++|++|+...+...+.+|+. ++...... ......++.+.++++.+++.+.+.
T Consensus 79 -~~~~~~~~~i~~v~q~~~~~~~tv~~ni~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------ 140 (251)
T PRK14244 79 -TNVVLLRAKVGMVFQKPNPFPKSIYDNVA-----------YGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG------ 140 (251)
T ss_pred -cchHHHhhhEEEEecCcccccCCHHHHHH-----------HHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh------
Confidence 00011234567777776544434444443 22111100 112334566788999999965210
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
..+++.+.+||||||||++||||| ||||++||. ++|+|++|| +.+..
T Consensus 141 -------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 141 -------DRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKK 213 (251)
T ss_pred -------hHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 024678899999999999999999 999999984 799999999 56788
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+|||+++ |++|++++.|++++++..+.+++++.+
T Consensus 214 ~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~ 247 (251)
T PRK14244 214 VSDRVAF-FQSGRIVEYNTTQEIFKNPQSSKTKRY 247 (251)
T ss_pred hcCEEEE-EECCEEEEeCCHHHHhcCCCChHHHHh
Confidence 9999965 999999999999999988777665443
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=280.34 Aligned_cols=183 Identities=17% Similarity=0.243 Sum_probs=139.2
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 1 ~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~----- 64 (213)
T cd03235 1 EVEDLTVSYGGHP---V---LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKPLE----- 64 (213)
T ss_pred CcccceeEECCEE---e---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCCEEEECCccHH-----
Confidence 4789999997532 4 677999999999999999999999999999999999 99999999998763
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc---CCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. .++.++|++|+...... +..++.+|+.++..... .......++++.++++.+++.+
T Consensus 65 -~---~~~~i~~v~q~~~~~~~--------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 124 (213)
T cd03235 65 -K---ERKRIGYVPQRRSIDRD--------FPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-------- 124 (213)
T ss_pred -H---HHhheEEeccccccccC--------CCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH--------
Confidence 1 13356777777543110 11244455544321100 0112334567889999999986
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +.+
T Consensus 125 ---------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~ 195 (213)
T cd03235 125 ---------LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLV 195 (213)
T ss_pred ---------HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 45888999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecC
Q 019066 282 LSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g 301 (346)
.++||++++ |++| +++.|
T Consensus 196 ~~~~d~i~~-l~~~-~~~~g 213 (213)
T cd03235 196 LEYFDRVLL-LNRT-VVASG 213 (213)
T ss_pred HHhcCEEEE-EcCc-EeecC
Confidence 889999965 8875 66544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=284.43 Aligned_cols=200 Identities=12% Similarity=0.113 Sum_probs=144.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|+.+.. .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~~~~-~~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~~- 70 (237)
T cd03252 1 ITFEHVRFRYKPDGP-VI---LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-----PENGRVLVDGHDLALAD- 70 (237)
T ss_pred CEEEEEEEecCCCCc-cc---eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCEEEECCeehHhcC-
Confidence 578999999965321 14 677999999999999999999999999999999999 99999999998874100
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
. ...++.++|++|+ ..++..++.+|+.++... .. ...+.+.++..++.+.+..+|.+++
T Consensus 71 --~-~~~~~~i~~~~q~-----------~~~~~~tv~~nl~~~~~~---~~----~~~~~~~~~~~~~~~~l~~l~~~~~ 129 (237)
T cd03252 71 --P-AWLRRQVGVVLQE-----------NVLFNRSIRDNIALADPG---MS----MERVIEAAKLAGAHDFISELPEGYD 129 (237)
T ss_pred --H-HHHhhcEEEEcCC-----------chhccchHHHHhhccCCC---CC----HHHHHHHHHHcCcHHHHHhCccccc
Confidence 0 0012344555554 333334666676553210 01 1223334444555443333333333
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+. +++++.+||||||||++||||| ||||++||. |.|+|++|| +.+ ..
T Consensus 130 ~~------~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~-~~ 202 (237)
T cd03252 130 TI------VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTV-KN 202 (237)
T ss_pred ch------hhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-Hh
Confidence 32 3566889999999999999999 999999984 789999999 455 46
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||++++ |++|++++.|++++++..
T Consensus 203 ~d~v~~-l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 203 ADRIIV-MEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CCEEEE-EECCEEEEEcCHHHHHhc
Confidence 999965 999999999999888755
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=267.93 Aligned_cols=188 Identities=16% Similarity=0.212 Sum_probs=157.3
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.++.+++++.+|++... .+ |+|+|++|.+||+++++||||||||||+|+++|+.. |..|+|.++|+.+..
T Consensus 2 ~~l~~~~~sl~y~g~~~-~~---le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-----P~~G~i~l~~r~i~g- 71 (259)
T COG4525 2 CMLNVSHLSLSYEGKPR-SA---LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-----PSRGSIQLNGRRIEG- 71 (259)
T ss_pred ceeehhheEEecCCcch-hh---hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-----cccceEEECCEeccC-
Confidence 36889999999987542 25 666999999999999999999999999999999999 999999999998861
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. .--+.||||..+++. ++.+|+.|++... ..++.+..+.+.+.+..+||.+
T Consensus 72 -----Pg--------------aergvVFQ~~~LlPWl~~~dNvafgL~l~-Gi~k~~R~~~a~q~l~~VgL~~------- 124 (259)
T COG4525 72 -----PG--------------AERGVVFQNEALLPWLNVIDNVAFGLQLR-GIEKAQRREIAHQMLALVGLEG------- 124 (259)
T ss_pred -----CC--------------ccceeEeccCccchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhCccc-------
Confidence 11 112345666666676 8889999998754 3456778889999999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||+.||||| |||+++||. |+.+++||| +
T Consensus 125 ----------~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie 194 (259)
T COG4525 125 ----------AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE 194 (259)
T ss_pred ----------ccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 45889999999999999999999 999999884 999999999 6
Q ss_pred hhhccccEEEEEec--CCeEeecCCcc
Q 019066 280 DLLSLTDRARIRTY--LGELLGIPPAK 304 (346)
Q Consensus 280 ~~~~~aDri~v~l~--~G~iv~~g~~~ 304 (346)
++.-+++|++ +|. .|+|++.-+++
T Consensus 195 EAlflatrLv-vlsp~pgRvv~~~~~d 220 (259)
T COG4525 195 EALFLATRLV-VLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHhhhheeE-EecCCCceeeEecCCC
Confidence 7888999996 486 57888765543
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=282.09 Aligned_cols=217 Identities=17% Similarity=0.191 Sum_probs=161.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+.......|++|+|.++|.++....
T Consensus 3 ~l~~~~v~~~~~~~~---~---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 76 (250)
T PRK14266 3 RIEVENLNTYFDDAH---I---LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76 (250)
T ss_pred EEEEEeEEEEeCCeE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence 589999999997532 3 7779999999999999999999999999999998641111138999999999874110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
......++.++|++|+...+.. ++.+|+.++............++++.++++.+++.+.+.
T Consensus 77 --~~~~~~~~~i~~~~q~~~~~~~-----------t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------ 137 (250)
T PRK14266 77 --VDVVELRKKVGMVFQKPNPFPK-----------SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK------ 137 (250)
T ss_pred --ccHHHHhhheEEEecCCccCcc-----------hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH------
Confidence 0011123456777777544432 344444433211111122345677888999999865321
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
..+++++.+||+|||||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 138 -------~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 138 -------DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATR 210 (250)
T ss_pred -------HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHh
Confidence 135788999999999999999999 999999984 789999999 57888
Q ss_pred cccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+||++++ |++|++++.|+++++...+.+++++.++
T Consensus 211 ~~~~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK14266 211 VSKYTSF-FLNGEIIESGLTDQIFINPKDKRTEDYI 245 (250)
T ss_pred hcCEEEE-EECCeEEEeCCHHHHHhCCCChHHHHHh
Confidence 9999965 9999999999999998888877765554
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=285.03 Aligned_cols=222 Identities=16% Similarity=0.169 Sum_probs=160.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+|+||||||||+++|+|+.++.+..+++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~~~---v---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~ 87 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQ---A---LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI 87 (265)
T ss_pred CceEEEEEEEEEECCee---e---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccc
Confidence 45799999999997532 4 77799999999999999999999999999999998721110279999999987631
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
..........++.++|++|+...+.. ++.+|+.++............++++.++++.+++.+.+.
T Consensus 88 ~~~~~~~~~~~~~i~~~~q~~~~~~~-----------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---- 152 (265)
T PRK14252 88 LSPEVDPIEVRMRISMVFQKPNPFPK-----------SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK---- 152 (265)
T ss_pred cccccCHHHHhccEEEEccCCcCCcc-----------hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh----
Confidence 00000001113356677666544332 344444433211111111233567788888888753210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
+..++.+.+|||||+||++||||| ||||++||. +.|+|+||| +.+
T Consensus 153 ---------~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~ 223 (265)
T PRK14252 153 ---------DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQA 223 (265)
T ss_pred ---------HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHH
Confidence 135778899999999999999999 999999984 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+|||+++ |++|++++.|++++++.++.+++++.++.
T Consensus 224 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 261 (265)
T PRK14252 224 ARVSDYTAY-MYMGELIEFGATDTIFIKPKNKQTEDYIT 261 (265)
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCCCCHHHHHHHh
Confidence 889999965 99999999999999988877777665543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=311.08 Aligned_cols=223 Identities=12% Similarity=0.115 Sum_probs=159.6
Q ss_pred CCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||+++|+++ ....+ |++|||+|++||++||+||||||||||+|+|+|++++....|++|+|.++|+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~---l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~ 79 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTV---VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79 (529)
T ss_pred CceEEEeceEEEecCCCCceee---eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecc
Confidence 3579999999999642 11125 6669999999999999999999999999999999982111127999999999875
Q ss_pred CcccccccccCCCCccceeecccc--cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRS--LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~--~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
...........++.++|++|+... +..+ ++.+++.+........+.....+++.++++.++|.+..
T Consensus 80 ~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-- 147 (529)
T PRK15134 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLH----------TLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA-- 147 (529)
T ss_pred cCCHHHHHHHhcCceEEEecCchhhcCchh----------hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--
Confidence 111000011223467888887531 1111 23333322111111122345567889999999997511
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..+++++.+||||||||++||||| ||||++||+ |.|||+|||
T Consensus 148 ------------~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 215 (529)
T PRK15134 148 ------------KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITH 215 (529)
T ss_pred ------------HHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence 024888999999999999999999 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
+.+..+||||++ |++|++++.|++++++..+.+..++.+
T Consensus 216 d~~~~~~~~dri~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 256 (529)
T PRK15134 216 NLSIVRKLADRVAV-MQNGRCVEQNRAATLFSAPTHPYTQKL 256 (529)
T ss_pred cHHHHHHhcCEEEE-EECCEEEEeCCHHHHhhCCCCHHHHHH
Confidence 568889999965 999999999999998876654444333
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=313.08 Aligned_cols=216 Identities=12% Similarity=0.166 Sum_probs=161.3
Q ss_pred CCcEEEeeeEEEeCCC--------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE
Q 019066 68 GSLTDAKNKILSYTPG--------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 139 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~--------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~ 139 (346)
.++|+++||++.|+.+ ....+ |++|||+|++||+++|+||||||||||+|+|+|++ |++|+|+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~------~~~G~i~ 343 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVV---VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI------NSQGEIW 343 (529)
T ss_pred CCcccccCcEEEeecCcccccccccccee---eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC------CCCcEEE
Confidence 4689999999999521 01124 66699999999999999999999999999999997 4689999
Q ss_pred ECceeCCCcccccccccCCCCccceeeccc--ccccchhhchHhhHHHHHhhhhcchhhcc-CCChHHHHHHHHHHHHHc
Q 019066 140 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTR--SLSDDASDNINMIKLWIMEGVRHGELVIR-RSDSSSLRNRMRCKAHKI 216 (346)
Q Consensus 140 ~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~--~~~~~v~qn~~~~~~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~ 216 (346)
++|+++..... ......++.++|++|++. .+..+ ++.+|+.++..... ..+....++++.++++.+
T Consensus 344 ~~g~~i~~~~~-~~~~~~~~~i~~v~q~~~~~l~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 412 (529)
T PRK15134 344 FDGQPLHNLNR-RQLLPVRHRIQVVFQDPNSSLNPRL----------NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV 412 (529)
T ss_pred ECCEEccccch-hhHHHhhhceEEEEeCchhhcCCcc----------cHHHHHHHHHHhccccCChHHHHHHHHHHHHHc
Confidence 99998741100 000011345678888752 22222 33444443321110 012234456788999999
Q ss_pred CCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------C
Q 019066 217 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------D 270 (346)
Q Consensus 217 ~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g 270 (346)
++.+. ..++++.+||||||||++||||| ||||++||. |
T Consensus 413 ~l~~~----------------~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 476 (529)
T PRK15134 413 GLDPE----------------TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ 476 (529)
T ss_pred CCCHH----------------HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhC
Confidence 99732 35889999999999999999999 999999984 7
Q ss_pred ceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 271 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 271 ~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.|||+||| +.+..+|||+++ |++|++++.|++++++..|.+++++.++.
T Consensus 477 ~tvi~vsHd~~~~~~~~d~i~~-l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 527 (529)
T PRK15134 477 LAYLFISHDLHVVRALCHQVIV-LRQGEVVEQGDCERVFAAPQQEYTRQLLA 527 (529)
T ss_pred CEEEEEeCCHHHHHHhcCeEEE-EECCEEEEEcCHHHHhcCCCChHHHHHhh
Confidence 89999999 578889999965 99999999999999998888877766553
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=303.59 Aligned_cols=193 Identities=15% Similarity=0.259 Sum_probs=156.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++|++|+|++ ++| |++|||+|.+||++||+|+||||||||+|+|+|.|+ |++|+|+++|+.+..
T Consensus 6 ~~ll~~~~i~K~Fgg---V~A---L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-----p~~G~I~~~G~~~~~ 74 (500)
T COG1129 6 PPLLELRGISKSFGG---VKA---LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-----PDSGEILIDGKPVAF 74 (500)
T ss_pred cceeeeecceEEcCC---cee---eccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-----CCCceEEECCEEccC
Confidence 457999999999987 446 555999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhh---ccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
.+ ........|.. |+|++.+++. +|.+|+.++... .+..+....++++.++|+.+++...
T Consensus 75 ~s---p~~A~~~GI~~-----------V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-- 138 (500)
T COG1129 75 SS---PRDALAAGIAT-----------VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-- 138 (500)
T ss_pred CC---HHHHHhCCcEE-----------EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC--
Confidence 11 11111223333 5555555555 666777666432 2345678889999999999999631
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
.+.+..+||.||||.|+||||| |||||+|.. |.++|+|||
T Consensus 139 ---------------~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISH 203 (500)
T COG1129 139 ---------------PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISH 203 (500)
T ss_pred ---------------hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 3677889999999999999999 999999863 999999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
+++.++||||.| |++|+.+...+.
T Consensus 204 rl~Ei~~i~DritV-lRDG~~v~~~~~ 229 (500)
T COG1129 204 RLDEVFEIADRITV-LRDGRVVGTRPT 229 (500)
T ss_pred cHHHHHHhcCEEEE-EeCCEEeeeccc
Confidence 789999999975 999999998873
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=315.71 Aligned_cols=187 Identities=11% Similarity=0.097 Sum_probs=152.0
Q ss_pred cEEEeeeEEEeCCCC--ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~--~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.|+++||+|+|++.. ...+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~---l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-----p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFA---LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-----PQEGEILLDGAAVSA 408 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCce---eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 599999999997531 1114 666999999999999999999999999999999999 999999999999861
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+...+.+...++|+|++.++..++.+|.. ....++++.++++.+++++++..+|+
T Consensus 409 ---------------~~~~~~~~~i~~v~q~~~lf~~ti~~n~~----------~~~~~~~~~~~~~~~~l~~~~~~lp~ 463 (555)
T TIGR01194 409 ---------------DSRDDYRDLFSAIFADFHLFDDLIGPDEG----------EHASLDNAQQYLQRLEIADKVKIEDG 463 (555)
T ss_pred ---------------CCHHHHHhhCcEEccChhhhhhhhhcccc----------cchhHHHHHHHHHHcCCchhhccccc
Confidence 12223333445566666666666666631 12345678899999999999999999
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~~ 280 (346)
||+|. ..||||||||++||||| ||||++||. ++|+|+||| ..
T Consensus 464 g~~t~-----------~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~ 532 (555)
T TIGR01194 464 GFSTT-----------TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532 (555)
T ss_pred ccCCc-----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 99984 48999999999999999 999999883 789999999 34
Q ss_pred hhccccEEEEEecCCeEeecC
Q 019066 281 LLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g 301 (346)
....||+|+ +|++|++++.-
T Consensus 533 ~~~~~d~i~-~l~~G~i~~~~ 552 (555)
T TIGR01194 533 YFELADQII-KLAAGCIVKDT 552 (555)
T ss_pred HHHhCCEEE-EEECCEEEEec
Confidence 566899996 59999998753
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=309.16 Aligned_cols=198 Identities=15% Similarity=0.186 Sum_probs=154.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC--CCceEEECceeC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p--~~G~I~~~g~~i 145 (346)
.++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|.++
T Consensus 3 ~~~l~~~nl~~~~~~~-~--i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 3 EYLLEMKNITKTFGGV-K--A---LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-----HGTYEGEIIFEGEEL 71 (506)
T ss_pred CceEEEeeeEEEeCCe-E--e---ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEEC
Confidence 3579999999999753 2 4 677999999999999999999999999999999998 6 799999999987
Q ss_pred CCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
... ......++.++|++|+...+..+ ++.+|+.++.... ...+.....+++.++++.+++.+
T Consensus 72 ~~~---~~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--- 135 (506)
T PRK13549 72 QAS---NIRDTERAGIAIIHQELALVKEL----------SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI--- 135 (506)
T ss_pred CCC---CHHHHHHCCeEEEEeccccCCCC----------cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC---
Confidence 511 01111234567888776544333 3444444432211 01122344567889999999976
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
..++++.+||||||||++||||| ||||++||+ |.|+|+|||
T Consensus 136 --------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH 201 (506)
T PRK13549 136 --------------NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISH 201 (506)
T ss_pred --------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 45888999999999999999999 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
+.+..+||++++ |++|+++..|+++++.
T Consensus 202 ~~~~~~~~~d~v~~-l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 202 KLNEVKAISDTICV-IRDGRHIGTRPAAGMT 231 (506)
T ss_pred cHHHHHHhcCEEEE-EECCEEeeecccccCC
Confidence 578889999965 9999999999987763
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=273.52 Aligned_cols=183 Identities=16% Similarity=0.234 Sum_probs=143.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
++++||++.|+. . ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 ~~~~~l~~~~~~--~------~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 64 (213)
T TIGR01277 1 LALDKVRYEYEH--L------PMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-----PASGSIKVNDQSHTG--- 64 (213)
T ss_pred CeEEeeeEEeCC--c------ceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEccc---
Confidence 478999999963 2 667999999999999999999999999999999999 999999999998751
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|++..+.++ +.+|+ .++.... .......++++.++++.+++.+
T Consensus 65 ---~~~~~~~i~~v~q~~~~~~~~t~~en~-----------~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--------- 120 (213)
T TIGR01277 65 ---LAPYQRPVSMLFQENNLFAHLTVRQNI-----------GLGLHPG-LKLNAEQQEKVVDAAQQVGIAD--------- 120 (213)
T ss_pred ---CChhccceEEEeccCccCCCCcHHHHH-----------HhHhhcc-CCccHHHHHHHHHHHHHcCcHH---------
Confidence 111234567777776554433 44444 3321110 0011233567788999999976
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++.+.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 121 --------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~ 192 (213)
T TIGR01277 121 --------YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA 192 (213)
T ss_pred --------HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 46888999999999999999999 999999983 689999999 567
Q ss_pred hccccEEEEEecCCeEeecCC
Q 019066 282 LSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~ 302 (346)
..+||++++ |++|++++.|+
T Consensus 193 ~~~~d~v~~-l~~g~i~~~~~ 212 (213)
T TIGR01277 193 RAIASQIAV-VSQGKIKVVSD 212 (213)
T ss_pred HhhcCeEEE-EECCeEEEecC
Confidence 789999965 99999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=310.04 Aligned_cols=197 Identities=12% Similarity=0.174 Sum_probs=153.7
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++|++++|++.. + |+|+||+|.+||+++|+||||||||||+|+|+|+++ |++|+|.++|.++...
T Consensus 3 ~~i~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~~ 71 (501)
T PRK10762 3 ALLQLKGIDKAFPGVK---A---LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-----RDAGSILYLGKEVTFN 71 (501)
T ss_pred ceEEEeeeEEEeCCeE---E---eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCCC
Confidence 4799999999997532 4 777999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc---cCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
. .....++.++|++|+...+..+ ++.+|+.++.... ...+....++++.++++.+++.+
T Consensus 72 ~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 133 (501)
T PRK10762 72 G---PKSSQEAGIGIIHQELNLIPQL----------TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF----- 133 (501)
T ss_pred C---HHHHHhCCEEEEEcchhccCCC----------cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----
Confidence 0 1111233567777765444332 4445554432211 01122344567889999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|+|||
T Consensus 134 ------------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~ 201 (501)
T PRK10762 134 ------------SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL 201 (501)
T ss_pred ------------CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45889999999999999999999 999999984 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccc
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
+.+..+||++++ |++|++++.|+++++.
T Consensus 202 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 202 KEIFEICDDVTV-FRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHhCCEEEE-EeCCEEEEecCcCcCC
Confidence 578899999965 9999999999887663
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=343.85 Aligned_cols=196 Identities=13% Similarity=0.119 Sum_probs=160.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+|+||+++|+++.. .+ |+||||+|++||.+||+|+||||||||+++|.|+++ ++|+|++||.|+.
T Consensus 1217 ~I~f~nVs~~Y~~~~~-~v---L~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------~~G~I~IdG~di~--- 1283 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGR-AV---LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVSWN--- 1283 (1490)
T ss_pred eEEEEEEEEEeCCCCc-ce---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------CCcEEEECCEEcc---
Confidence 5999999999975432 24 777999999999999999999999999999999986 4799999999986
Q ss_pred ccccccc--CCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 150 FLQEYTI--PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 150 ~~~~~~~--~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.... .|+.+++++|++..|.+ ++++|+... ....++++.++|+.+++.+.+..+|+
T Consensus 1284 ---~i~~~~lR~~is~IpQdp~LF~G-----------TIR~NLdp~--------~~~tdeei~~aL~~~~L~~~i~~lp~ 1341 (1490)
T TIGR01271 1284 ---SVTLQTWRKAFGVIPQKVFIFSG-----------TFRKNLDPY--------EQWSDEEIWKVAEEVGLKSVIEQFPD 1341 (1490)
T ss_pred ---cCCHHHHHhceEEEeCCCccCcc-----------CHHHHhCcc--------cCCCHHHHHHHHHHCCCHHHHHhCcc
Confidence 2211 14455566666555544 455554311 11235778999999999999999999
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
|++|.|+|.|. .||||||||++||||| |||||+||. ++|+|+||| +.+
T Consensus 1342 GLdt~v~e~G~------nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti 1415 (1490)
T TIGR01271 1342 KLDFVLVDGGY------VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415 (1490)
T ss_pred ccccccccCCC------cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999854 8999999999999999 999999984 899999999 345
Q ss_pred hccccEEEEEecCCeEeecCCcccccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
. .||||++ |++|+|++.|+|++++.
T Consensus 1416 ~-~~DrIlv-L~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1416 L-ECQQFLV-IEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred H-hCCEEEE-EECCEEEEeCCHHHHHc
Confidence 4 4999965 99999999999999985
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=289.81 Aligned_cols=231 Identities=18% Similarity=0.195 Sum_probs=162.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+++||+|.+||+++|+||||||||||+++|+|++++....|++|+|.++|.++..
T Consensus 43 ~~~l~i~nl~~~~~~~~---i---L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDH---A---LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred CceEEEEEEEEEeCCee---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 45799999999997633 4 77799999999999999999999999999999998511111589999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcch--hhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~--~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.. . .....++.++|++|+...+...+.+|+.+..... ....-+. ...........++++.++++.+++.+.+.
T Consensus 117 ~~-~-~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-- 191 (305)
T PRK14264 117 DG-V-NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKH-GDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN-- 191 (305)
T ss_pred cc-c-cHHHHhhceEEEccCCccccccHHHHHHhHHhhc-ccccccccccccccCchHHHHHHHHHHHHHcCCchhhh--
Confidence 00 0 0111134567777776544434555554321100 0000000 00000011234567888999998854221
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--h
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 279 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~ 279 (346)
+.+++++.+|||||+||++||||| ||||++||. +.|+|++|| +
T Consensus 192 -----------~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~ 260 (305)
T PRK14264 192 -----------DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQ 260 (305)
T ss_pred -----------HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 135788999999999999999999 999999984 689999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+..+||+++++|++|++++.|++++++..+.++.+..++.
T Consensus 261 ~i~~~~d~i~~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 301 (305)
T PRK14264 261 QAARISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYIT 301 (305)
T ss_pred HHHHhcCEEEEEecCCEEEEeCCHHHHHhCcccHHHHHHhc
Confidence 77889999754589999999999999988777666555443
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=283.03 Aligned_cols=215 Identities=19% Similarity=0.205 Sum_probs=158.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.+.+++++++|++.. + |+++||+|++||+++|+|+||||||||+++|+|++++....|++|+|.++|+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 79 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFM---A---VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYG 79 (261)
T ss_pred CceEEEEeEEEEeCCEE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccc
Confidence 45699999999997532 4 77799999999999999999999999999999999811101279999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
... .....++.++|++|+...+. .++.+|+.++...... .....+++.++++.+++.+.+..
T Consensus 80 ~~~--~~~~~~~~i~~v~q~~~~~~-----------~tv~enl~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~i~~--- 141 (261)
T PRK14263 80 KGV--DPVVVRRYIGMVFQQPNPFS-----------MSIFDNVAFGLRLNRY--KGDLGDRVKHALQGAALWDEVKD--- 141 (261)
T ss_pred ccc--chHhhhhceEEEecCCcccc-----------ccHHHHHHHHHhhcCc--hHHHHHHHHHHHHHcCCchhhhh---
Confidence 100 11112345677777754442 2334444433221111 12345678889999998653210
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 142 ----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i 211 (261)
T PRK14263 142 ----------KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQA 211 (261)
T ss_pred ----------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 23567889999999999999999 999999984 789999999 568
Q ss_pred hccccEEEEEec--------CCeEeecCCccccccCCCCCChHH
Q 019066 282 LSLTDRARIRTY--------LGELLGIPPAKQIFDIPESSDPEN 317 (346)
Q Consensus 282 ~~~aDri~v~l~--------~G~iv~~g~~~~l~~~~~~~~~~~ 317 (346)
..+|||+++ |+ +|++++.|++++++..+.+++++.
T Consensus 212 ~~~~d~v~~-l~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 254 (261)
T PRK14263 212 IRVADTTAF-FSVDISQGTRTGYLVEMGPTAQIFQNPREQLTSD 254 (261)
T ss_pred HHhCCEEEE-EecccccccCCceEEEeCCHHHHHhCCCcHHHHH
Confidence 899999975 85 899999999999988766555443
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=308.97 Aligned_cols=194 Identities=15% Similarity=0.167 Sum_probs=154.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 77 (510)
T PRK15439 9 PPLLCARSISKQYSGVE---V---LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-----PDSGTLEIGGNPCAR 77 (510)
T ss_pred CceEEEEeEEEEeCCce---e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 45799999999997533 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. .....++.++|++|+...+..+ ++.+|+.++... ....++++.++++.+++.+
T Consensus 78 ~~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~------- 132 (510)
T PRK15439 78 LT---PAKAHQLGIYLVPQEPLLFPNL----------SVKENILFGLPK-----RQASMQKMKQLLAALGCQL------- 132 (510)
T ss_pred CC---HHHHHhCCEEEEeccCccCCCC----------cHHHHhhccccc-----chHHHHHHHHHHHHcCCCc-------
Confidence 10 1111223467777775544332 444555443211 1234567889999999986
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
..++++.+||||||||++||||| ||||++||. |+|||++|| +.
T Consensus 133 ----------~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 202 (510)
T PRK15439 133 ----------DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE 202 (510)
T ss_pred ----------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 45889999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCcccccc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+..+||++++ |++|++++.|+++++..
T Consensus 203 ~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 203 IRQLADRISV-MRDGTIALSGKTADLST 229 (510)
T ss_pred HHHhCCEEEE-EECCEEEEecChHHcCH
Confidence 8889999965 99999999999887653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=307.92 Aligned_cols=198 Identities=15% Similarity=0.170 Sum_probs=154.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 ~~~l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 71 (510)
T PRK09700 3 TPYISMAGIGKSFGPVH---A---LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-----PTKGTITINNINYNK 71 (510)
T ss_pred CceEEEeeeEEEcCCeE---E---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-----CCccEEEECCEECCC
Confidence 35799999999997532 4 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh----ccC--CChHHHHHHHHHHHHHcCCCcc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV----IRR--SDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~----~~~--~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
.. .....++.++|++|+...+..+ ++.+|+.++... ... .+..+..+++.++++.+++.+
T Consensus 72 ~~---~~~~~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~- 137 (510)
T PRK09700 72 LD---HKLAAQLGIGIIYQELSVIDEL----------TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV- 137 (510)
T ss_pred CC---HHHHHHCCeEEEeecccccCCC----------cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-
Confidence 11 1111234567888776544433 333444332210 000 112345577889999999986
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEE
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 276 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviii 276 (346)
..++++.+||||||||++||||| ||||++||. |+|||+|
T Consensus 138 ----------------~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv 201 (510)
T PRK09700 138 ----------------DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYI 201 (510)
T ss_pred ----------------CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 46889999999999999999999 999999984 7999999
Q ss_pred ec--hhhhccccEEEEEecCCeEeecCCccccc
Q 019066 277 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 277 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
|| +.+..+||++++ |++|+++..|++++++
T Consensus 202 sHd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 202 SHKLAEIRRICDRYTV-MKDGSSVCSGMVSDVS 233 (510)
T ss_pred eCCHHHHHHhCCEEEE-EECCEEeeecchhhCC
Confidence 99 578889999965 9999999999988764
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=280.97 Aligned_cols=200 Identities=15% Similarity=0.188 Sum_probs=144.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~~~~-~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~-- 69 (234)
T cd03251 1 VEFKNVTFRYPGDGP-PV---LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-----VDSGRILIDGHDVRDY-- 69 (234)
T ss_pred CEEEEEEEEeCCCCc-cc---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-----CCCCEEEECCEEhhhC--
Confidence 579999999976421 14 777999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.... .++.++|++|+...+ ..++.+|+.+.... .. ...+.+.++..++...+..++.++.
T Consensus 70 -~~~~-~~~~i~~~~q~~~~~-----------~~tv~enl~~~~~~---~~----~~~~~~~~~~~~~~~~~~~l~~~l~ 129 (234)
T cd03251 70 -TLAS-LRRQIGLVSQDVFLF-----------NDTVAENIAYGRPG---AT----REEVEEAARAANAHEFIMELPEGYD 129 (234)
T ss_pred -CHHH-HHhhEEEeCCCCeec-----------cccHHHHhhccCCC---CC----HHHHHHHHHHcCcHHHHHhcccCcc
Confidence 0001 133456666664333 33555665543221 01 1223333444444444444444444
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.+ ++++.+||||||||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 130 ~~~------~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 202 (234)
T cd03251 130 TVI------GERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN- 202 (234)
T ss_pred eee------ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-
Confidence 433 455889999999999999999 999999984 789999999 45655
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||++++ |++|++++.|++++++..
T Consensus 203 ~d~v~~-l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 203 ADRIVV-LEDGKIVERGTHEELLAQ 226 (234)
T ss_pred CCEEEE-ecCCeEeeeCCHHHHHHc
Confidence 999964 999999999998877654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=275.84 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=144.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~l~~v~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~~~~~--- 66 (223)
T TIGR03740 1 LETKNLSKRFGKQT---A---VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-----PTSGEIIFDGHPWTR--- 66 (223)
T ss_pred CEEEeEEEEECCEE---E---EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeccc---
Confidence 57899999997532 4 777999999999999999999999999999999999 999999999987641
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. .++.+++++|+...+... +.+|+.+.. .... . .+.++.++++.+++.+
T Consensus 67 ---~--~~~~~~~~~q~~~~~~~~t~~~~~~~~~-----------~~~~-~----~~~~~~~~l~~~~l~~--------- 116 (223)
T TIGR03740 67 ---K--DLHKIGSLIESPPLYENLTARENLKVHT-----------TLLG-L----PDSRIDEVLNIVDLTN--------- 116 (223)
T ss_pred ---c--ccccEEEEcCCCCccccCCHHHHHHHHH-----------HHcC-C----CHHHHHHHHHHcCCcH---------
Confidence 1 123567777776544332 455543321 1111 1 1246778999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++.+.+|||||+||++||||| ||||++||. |.|+|++|| +.+.
T Consensus 117 --------~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 117 --------TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188 (223)
T ss_pred --------HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 45888999999999999999999 999999984 789999999 5677
Q ss_pred ccccEEEEEecCCeEeecCCcc
Q 019066 283 SLTDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~ 304 (346)
.+|||+++ |++|+++..|++.
T Consensus 189 ~~~d~i~~-l~~g~i~~~~~~~ 209 (223)
T TIGR03740 189 QLADHIGI-ISEGVLGYQGKIN 209 (223)
T ss_pred HhcCEEEE-EeCCEEEEecChh
Confidence 89999965 9999999999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=276.61 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=145.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++... .+ |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 3 l~~~~l~~~~~~~~~-~~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~- 72 (220)
T cd03245 3 IEFRNVSFSYPNQEI-PA---LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-----PTSGSVLLDGTDIRQLD- 72 (220)
T ss_pred EEEEEEEEEcCCCCc-cc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCCeEEECCEEhHHCC-
Confidence 789999999975321 14 677999999999999999999999999999999999 99999999998864100
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
... .++.++|++|+.. ++..++.+|+.+.... . ..+++.++++.+++.+....+|+|++
T Consensus 73 --~~~-~~~~i~~~~q~~~-----------~~~~tv~e~l~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~~~~~~ 131 (220)
T cd03245 73 --PAD-LRRNIGYVPQDVT-----------LFYGTLRDNITLGAPL-----A--DDERILRAAELAGVTDFVNKHPNGLD 131 (220)
T ss_pred --HHH-HHhhEEEeCCCCc-----------cccchHHHHhhcCCCC-----C--CHHHHHHHHHHcCcHHHHHhcccccc
Confidence 001 1224456555543 3333566666543210 1 12456678888999877777788887
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhhccc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLT 285 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~~~a 285 (346)
+.+.. .+.+||||||||++||||| ||||++||. +.|+|++|| .....+|
T Consensus 132 ~~~~~------~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 205 (220)
T cd03245 132 LQIGE------RGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV 205 (220)
T ss_pred ceecC------CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence 77543 3679999999999999999 999999984 579999999 2234789
Q ss_pred cEEEEEecCCeEeecC
Q 019066 286 DRARIRTYLGELLGIP 301 (346)
Q Consensus 286 Dri~v~l~~G~iv~~g 301 (346)
|++++ |++|++++.|
T Consensus 206 d~v~~-l~~g~i~~~~ 220 (220)
T cd03245 206 DRIIV-MDSGRIVADG 220 (220)
T ss_pred CEEEE-EeCCeEeecC
Confidence 99965 9999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=284.88 Aligned_cols=196 Identities=12% Similarity=0.028 Sum_probs=148.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC--------CceEEEC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--------RAQVTYN 141 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~--------~G~I~~~ 141 (346)
||+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |+ +|+|.++
T Consensus 1 ml~~~nl~~~~~~~~---i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-----p~~~~~~~~~~G~i~~~ 69 (272)
T PRK13547 1 MLTADHLHVARRHRA---I---LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-----GGGAPRGARVTGDVTLN 69 (272)
T ss_pred CeEEEEEEEEECCEe---E---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CcccccccCCceEEEEC
Confidence 589999999997542 4 777999999999999999999999999999999998 87 8999999
Q ss_pred ceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc---CCChHHHHHHHHHHHHHcCC
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR---RSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~---~~~~~~~~~~~~~~l~~~~l 218 (346)
|.++.... . ...++.++|++|+...+..+ ++.+|+.++..... ........+++.++++.+++
T Consensus 70 g~~~~~~~---~-~~~~~~~~~v~q~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 135 (272)
T PRK13547 70 GEPLAAID---A-PRLARLRAVLPQAAQPAFAF----------SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGA 135 (272)
T ss_pred CEEcccCC---H-HHHHhhcEEecccCCCCCCC----------cHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCc
Confidence 99874110 0 01122346677664322222 34445444321000 00112345678889999999
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------------CccccCCCC-----------
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------------NCPYLSFRD----------- 269 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------------DEPts~Ld~----------- 269 (346)
.+ ..++++.+|||||+||++||||| ||||++||.
T Consensus 136 ~~-----------------~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 198 (272)
T PRK13547 136 TA-----------------LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVR 198 (272)
T ss_pred Hh-----------------hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 87 45888999999999999999987 899999984
Q ss_pred ------CceEEEEec--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 270 ------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 270 ------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.|+|+||| +.+.++||++++ |++|++++.|++++++.
T Consensus 199 ~~~~~~~~tviiisH~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 199 RLARDWNLGVLAIVHDPNLAARHADRIAM-LADGAIVAHGAPADVLT 244 (272)
T ss_pred HHHHhcCCEEEEEECCHHHHHHhCCEEEE-EECCeEEEecCHHHHcC
Confidence 689999999 567789999965 99999999999887754
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=279.49 Aligned_cols=198 Identities=13% Similarity=0.179 Sum_probs=147.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~~--~---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~v~~~g~~~~~~-- 68 (236)
T cd03253 1 IEFENVTFAYDPGRP--V---LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-----VSSGSILIDGQDIREV-- 68 (236)
T ss_pred CEEEEEEEEeCCCCc--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCEEEECCEEhhhC--
Confidence 578999999964333 3 777999999999999999999999999999999999 9999999999887410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|++|+. .++..++.+|+.++... .. ...+.++++.+++.+.+..+|.|++
T Consensus 69 --~~~~~~~~i~~~~q~~-----------~~~~~tv~~nl~~~~~~---~~----~~~~~~~~~~~~l~~~~~~l~~~~~ 128 (236)
T cd03253 69 --TLDSLRRAIGVVPQDT-----------VLFNDTIGYNIRYGRPD---AT----DEEVIEAAKAAQIHDKIMRFPDGYD 128 (236)
T ss_pred --CHHHHHhhEEEECCCC-----------hhhcchHHHHHhhcCCC---CC----HHHHHHHHHHcCcHHHHHhcccccc
Confidence 0000122345555553 33444666776654321 11 1224455666666665555566666
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.+ ++.+.+||||||||++||||| ||||++||. |.|+|++|| +.+. .
T Consensus 129 ~~~------~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~-~ 201 (236)
T cd03253 129 TIV------GERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV-N 201 (236)
T ss_pred chh------hcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-h
Confidence 654 344779999999999999999 999999984 689999999 4554 4
Q ss_pred ccEEEEEecCCeEeecCCcccccc
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
||+++ +|++|++++.|+.+++..
T Consensus 202 ~d~~~-~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 202 ADKII-VLKDGRIVERGTHEELLA 224 (236)
T ss_pred CCEEE-EEECCEEEeeCCHHHHhh
Confidence 99996 499999999998887765
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=262.57 Aligned_cols=217 Identities=14% Similarity=0.170 Sum_probs=175.5
Q ss_pred CCcEEEeeeEEEeCCC------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC
Q 019066 68 GSLTDAKNKILSYTPG------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
++.++++|+++.|... ..++|++. |||++++|+++||||.||||||||.++|+|+.+ |++|+|+++
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~---vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-----PTsG~il~n 73 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKP---VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-----PTSGEILIN 73 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccc---eEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-----CCCceEEEC
Confidence 4578999999988532 22457555 999999999999999999999999999999999 999999999
Q ss_pred ceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
|+.+. ..++..+.+++.++|||+.... |+.+ .+..-+..++............+++.+-|+.+||-++
T Consensus 74 ~~~L~----~~Dy~~R~k~IRMiFQDpnts~-----NPRl---~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pd 141 (267)
T COG4167 74 DHPLH----FGDYSFRSKRIRMIFQDPNTSL-----NPRL---RIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPD 141 (267)
T ss_pred Ccccc----ccchHhhhhheeeeecCCcccc-----Chhh---hhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcc
Confidence 99875 2344445556678888875431 2222 2222222333444455567778899999999999875
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEE
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 275 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvii 275 (346)
..+-+|+.||-|||||||+|||| ||...+||. |.+.|.
T Consensus 142 ----------------han~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiY 205 (267)
T COG4167 142 ----------------HANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205 (267)
T ss_pred ----------------ccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEE
Confidence 46889999999999999999999 999999883 999999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
|+. ..+..++|.|+| |++|+++|.|++.+++..|.++-++.++.+
T Consensus 206 V~QhlG~iKHi~D~viV-M~EG~vvE~G~t~~v~a~P~~~~TkRlieS 252 (267)
T COG4167 206 VTQHIGMIKHISDQVLV-MHEGEVVERGSTADVLASPLHELTKRLIES 252 (267)
T ss_pred EechhhHhhhhcccEEE-EecCceeecCChhhhhcCCccHHHHHHHHH
Confidence 998 689999999965 999999999999999999999988888764
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=281.46 Aligned_cols=195 Identities=14% Similarity=0.195 Sum_probs=147.8
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 6 ~l~~~~l~~~~~~~~~--i---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~--- 72 (272)
T PRK15056 6 GIVVNDVTVTWRNGHT--A---LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-----LASGKISILGQPTR--- 72 (272)
T ss_pred eEEEEeEEEEecCCcE--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEhH---
Confidence 6999999999964333 3 777999999999999999999999999999999999 99999999998864
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh---ccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. ...++.++|++|+....... ...+.+++.++... .........++++.++++.+++.+
T Consensus 73 ---~-~~~~~~i~~v~q~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~------ 134 (272)
T PRK15056 73 ---Q-ALQKNLVAYVPQSEEVDWSF--------PVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE------ 134 (272)
T ss_pred ---H-hhccceEEEeccccccccCC--------CcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh------
Confidence 1 11123467888775431100 01122332221100 000112334566788999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||. |.|||++|| +
T Consensus 135 -----------~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~ 203 (272)
T PRK15056 135 -----------FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG 203 (272)
T ss_pred -----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 45888999999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCcccccc
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
.+..+||+++ ++ +|++++.|++++++.
T Consensus 204 ~~~~~~d~v~-~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 204 SVTEFCDYTV-MV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHhCCEEE-EE-CCEEEeecCHHhccC
Confidence 6888999994 36 899999999988764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=278.43 Aligned_cols=201 Identities=12% Similarity=0.137 Sum_probs=145.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++.....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 l~i~~l~~~~~~~~~~~~---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~- 71 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPI---LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-----PTSGEILLDGVDIRDLN- 71 (238)
T ss_pred CeEEEEEEecCCCCCccc---eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-----CCCCEEEECCEehhhcC-
Confidence 578999999975321124 677999999999999999999999999999999999 99999999998864100
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
... .++.++|++| ++.++..++.+|+.++.... . .+++.+.++..++.+....+|.|++
T Consensus 72 --~~~-~~~~i~~~~q-----------~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~~~~~~~~~~~l~~~~~ 130 (238)
T cd03249 72 --LRW-LRSQIGLVSQ-----------EPVLFDGTIAENIRYGKPDA---T----DEEVEEAAKKANIHDFIMSLPDGYD 130 (238)
T ss_pred --HHH-HHhhEEEECC-----------chhhhhhhHHHHhhccCCCC---C----HHHHHHHHHHcChHHHHHhhccccc
Confidence 000 1123445544 44444446777776543210 1 1223344555555544444444444
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.+ ++++.+||||||||++||||| ||||++||. |.|+|++|| +.+. +
T Consensus 131 ~~~------~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~ 203 (238)
T cd03249 131 TLV------GERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-N 203 (238)
T ss_pred eee------ccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-h
Confidence 443 455889999999999999999 999999983 789999999 4565 7
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||++++ |++|++++.|+.+++...
T Consensus 204 ~d~v~~-l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 204 ADLIAV-LQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred CCEEEE-EECCEEEEeCCHHHHhhc
Confidence 999965 999999999988777654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=275.55 Aligned_cols=190 Identities=11% Similarity=0.082 Sum_probs=143.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 5 ~~~i~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 73 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAK---I---LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDIST 73 (225)
T ss_pred CceEEEeccEEeeCCce---e---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEcCc
Confidence 45799999999997533 4 777999999999999999999999999999999999 999999999988741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . ...++.++|++|+...+.. ++.+|+.+...... ....++++.++++.+++.+.
T Consensus 74 ~~-~---~~~~~~i~~~~q~~~l~~~-----------tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~l~~~------ 129 (225)
T PRK10247 74 LK-P---EIYRQQVSYCAQTPTLFGD-----------TVYDNLIFPWQIRN---QQPDPAIFLDDLERFALPDT------ 129 (225)
T ss_pred CC-H---HHHHhccEEEecccccccc-----------cHHHHHHhHHhhcC---CChHHHHHHHHHHHcCCChH------
Confidence 10 0 0113356677776544332 34444443221111 11123567789999999632
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+|||||+||++||||| ||||++||. |.|+|++|| +
T Consensus 130 ----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~ 199 (225)
T PRK10247 130 ----------ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD 199 (225)
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH
Confidence 35888999999999999999999 999999984 789999999 4
Q ss_pred hhhccccEEEEEe-cCCeEeecCCcc
Q 019066 280 DLLSLTDRARIRT-YLGELLGIPPAK 304 (346)
Q Consensus 280 ~~~~~aDri~v~l-~~G~iv~~g~~~ 304 (346)
.+. .||++++ | +++..+++|+++
T Consensus 200 ~~~-~~d~i~~-l~~~~~~~~~~~~~ 223 (225)
T PRK10247 200 EIN-HADKVIT-LQPHAGEMQEARYE 223 (225)
T ss_pred HHH-hCCEEEE-EecccchHhhhhhc
Confidence 554 6999975 7 577788888774
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=273.94 Aligned_cols=192 Identities=16% Similarity=0.120 Sum_probs=147.4
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 3 l~~~~l~~~~~~~~~-~~---l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 71 (221)
T cd03244 3 IEFKNVSLRYRPNLP-PV---LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVDISKI-- 71 (221)
T ss_pred EEEEEEEEecCCCCc-cc---ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhHhC--
Confidence 789999999975321 14 777999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.. ...++.++|++|+... +..++.+|+.+... ...+++.++++.+++.+.+..+|.|+.
T Consensus 72 -~~-~~~~~~i~~~~q~~~l-----------~~~tv~enl~~~~~--------~~~~~~~~~~~~~~l~~~~~~l~~~l~ 130 (221)
T cd03244 72 -GL-HDLRSRISIIPQDPVL-----------FSGTIRSNLDPFGE--------YSDEELWQALERVGLKEFVESLPGGLD 130 (221)
T ss_pred -CH-HHHhhhEEEECCCCcc-----------ccchHHHHhCcCCC--------CCHHHHHHHHHHhCcHHHHHhcccccc
Confidence 00 0113355666666443 33355566542111 112456777888898887777788888
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.++. ++.+||+||+||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 131 ~~~~~------~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 203 (221)
T cd03244 131 TVVEE------GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID- 203 (221)
T ss_pred ccccc------CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-
Confidence 77654 4779999999999999999 999999984 789999999 45654
Q ss_pred ccEEEEEecCCeEeecCC
Q 019066 285 TDRARIRTYLGELLGIPP 302 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~ 302 (346)
||++++ |++|++++.|+
T Consensus 204 ~d~i~~-l~~g~~~~~~~ 220 (221)
T cd03244 204 SDRILV-LDKGRVVEFDS 220 (221)
T ss_pred CCEEEE-EECCeEEecCC
Confidence 999965 99999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=280.22 Aligned_cols=202 Identities=15% Similarity=0.082 Sum_probs=153.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.|+++|++++|++... .+ |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 17 ~~~i~~~~l~~~~~~~~~-~i---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~i~g~~i~~ 87 (257)
T cd03288 17 GGEIKIHDLCVRYENNLK-PV---LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-----IFDGKIVIDGIDISK 87 (257)
T ss_pred CceEEEEEEEEEeCCCCC-cc---eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-----CCCCeEEECCEEhhh
Confidence 456999999999975321 14 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .....++.++|++|++. ++..++.+|+..... ...+.+.++++.+++...+..+|.
T Consensus 88 ~----~~~~~~~~i~~v~q~~~-----------l~~~tv~~nl~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~ 144 (257)
T cd03288 88 L----PLHTLRSRLSIILQDPI-----------LFSGSIRFNLDPECK--------CTDDRLWEALEIAQLKNMVKSLPG 144 (257)
T ss_pred C----CHHHHhhhEEEECCCCc-----------ccccHHHHhcCcCCC--------CCHHHHHHHHHHhCcHHHHhhccc
Confidence 0 00011334556665543 333355555542110 012345566777788777777777
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
|+++.+++. +.+||+||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 145 ~l~~~~~~~------~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~ 218 (257)
T cd03288 145 GLDAVVTEG------GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTI 218 (257)
T ss_pred ccCcEeccC------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHH
Confidence 888776654 679999999999999999 999999884 799999999 445
Q ss_pred hccccEEEEEecCCeEeecCCccccccC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.. |||+++ |++|++++.|+++++...
T Consensus 219 ~~-~dri~~-l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 219 LD-ADLVLV-LSRGILVECDTPENLLAQ 244 (257)
T ss_pred Hh-CCEEEE-EECCEEEEeCCHHHHHhc
Confidence 54 999965 999999999999887654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=275.56 Aligned_cols=177 Identities=20% Similarity=0.303 Sum_probs=147.7
Q ss_pred eeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccccc
Q 019066 94 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 173 (346)
Q Consensus 94 ~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~ 173 (346)
+++|+++.-.++||.|+||||||||+|+|+|+.+ |++|.|.++|..+......-.....++++||+|||.++|..
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-----PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH 90 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR-----PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPH 90 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC-----ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccc
Confidence 4899998866999999999999999999999999 99999999998764111111112236788999999888877
Q ss_pred c-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHH
Q 019066 174 D-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 252 (346)
Q Consensus 174 ~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQ 252 (346)
| |..|+.+.. . ........++...+|+.+ +++++|..|||||||
T Consensus 91 ~tVrgNL~YG~-----------~-------~~~~~~fd~iv~lLGI~h-----------------LL~R~P~~LSGGEkQ 135 (352)
T COG4148 91 YTVRGNLRYGM-----------W-------KSMRAQFDQLVALLGIEH-----------------LLDRYPGTLSGGEKQ 135 (352)
T ss_pred eEEecchhhhh-----------c-------ccchHhHHHHHHHhCcHH-----------------HHhhCCCccCcchhh
Confidence 7 666665533 1 123455677889999999 789999999999999
Q ss_pred HHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCcc
Q 019066 253 NQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 253 Rv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~ 304 (346)
||+|+||| |||.++||. ++.|++||| +++.++||+++ +|++|++.+.|..+
T Consensus 136 RVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV-~le~GkV~A~g~~e 214 (352)
T COG4148 136 RVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVV-VLENGKVKASGPLE 214 (352)
T ss_pred HHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEE-EecCCeEEecCcHH
Confidence 99999999 999999984 899999999 78999999995 59999999999999
Q ss_pred ccccCCC
Q 019066 305 QIFDIPE 311 (346)
Q Consensus 305 ~l~~~~~ 311 (346)
+++..+.
T Consensus 215 ~v~~~~~ 221 (352)
T COG4148 215 EVWGSPD 221 (352)
T ss_pred HHhcCcc
Confidence 9998874
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=267.48 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=140.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
+.+ ||+|+|++. . + |+||+|++ |+++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 2 ~~~-~l~~~~~~~--~-----~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~ 66 (214)
T cd03297 2 LCV-DIEKRLPDF--T-----L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-----PDGGTIVLNGTVLFDSRK 66 (214)
T ss_pred cee-eeeEecCCe--e-----e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEecccccc
Confidence 456 899999763 2 3 59999999 9999999999999999999999999 999999999988641000
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|+...+..+ +.+|+.+ ..... .....++++.++++.+++.+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~-----------~~~~~---~~~~~~~~~~~~l~~~~l~~--------- 123 (214)
T cd03297 67 KINLPPQQRKIGLVFQQYALFPHLNVRENLAF-----------GLKRK---RNREDRISVDELLDLLGLDH--------- 123 (214)
T ss_pred hhhhhhHhhcEEEEecCCccCCCCCHHHHHHH-----------HHhhC---CHHHHHHHHHHHHHHcCCHh---------
Confidence 000111234567777776554433 4444432 21100 12334567889999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 124 --------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 124 --------LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195 (214)
T ss_pred --------HhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH
Confidence 45888999999999999999999 999999983 689999999 567
Q ss_pred hccccEEEEEecCCeEeecC
Q 019066 282 LSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g 301 (346)
..+||++++ |++|++++.|
T Consensus 196 ~~~~d~i~~-l~~G~i~~~g 214 (214)
T cd03297 196 EYLADRIVV-MEDGRLQYIG 214 (214)
T ss_pred HHhcCEEEE-EECCEEEecC
Confidence 889999965 9999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=299.82 Aligned_cols=194 Identities=12% Similarity=0.126 Sum_probs=150.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 2 ~~~l~~~~l~~~~~~~~---i---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~i~~ 70 (501)
T PRK11288 2 SPYLSFDGIGKTFPGVK---A---LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-----PDAGSILIDGQEMRF 70 (501)
T ss_pred CceEEEeeeEEEECCEE---E---EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCEEEECCEECCC
Confidence 35799999999997532 4 777999999999999999999999999999999999 999999999998741
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh--ccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.. .....++.++|++|+...+..+ ++.+|+.++... .........++++.++++.+++.+
T Consensus 71 ~~---~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 132 (501)
T PRK11288 71 AS---TTAALAAGVAIIYQELHLVPEM----------TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI----- 132 (501)
T ss_pred CC---HHHHHhCCEEEEEechhccCCC----------CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----
Confidence 10 1111244567777765544332 344444433210 011123445677889999999976
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|+|||
T Consensus 133 ------------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~ 200 (501)
T PRK11288 133 ------------DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM 200 (501)
T ss_pred ------------CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 35788999999999999999999 999999984 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCc
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
+.+..+|||+++ |++|+++..++.
T Consensus 201 ~~~~~~~d~i~~-l~~G~i~~~~~~ 224 (501)
T PRK11288 201 EEIFALCDAITV-FKDGRYVATFDD 224 (501)
T ss_pred HHHHHhCCEEEE-EECCEEEeecCc
Confidence 568889999965 999999987653
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=269.64 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=143.3
Q ss_pred EEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 71 TDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 71 l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
|+++|+++.|+++. ...+ |+++||++++|++++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 2 l~~~~l~~~~~~~~~~~~i---l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~ 73 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQV---LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-----VQEGSLKVLGQELYGAS 73 (220)
T ss_pred EEEEEEEEEccCCCcceeE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEhHhcC
Confidence 78999999996531 1224 677999999999999999999999999999999999 99999999999874100
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.......++.++|++|+...+..+ +.+|+.+.. ...........++++.++++.+++.+
T Consensus 74 -~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~l~~-------- 133 (220)
T TIGR02982 74 -EKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL-----------ELQPNLSYQEARERARAMLEAVGLGD-------- 133 (220)
T ss_pred -HhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHH-----------HhccCCCHHHHHHHHHHHHHHcCChh--------
Confidence 000011234567777776555433 555544322 11111123445567889999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~~~ 281 (346)
..++++.+||+|||||++||||| ||||++||. +.|+|++|| ..+
T Consensus 134 ---------~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~ 204 (220)
T TIGR02982 134 ---------HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI 204 (220)
T ss_pred ---------hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 45888999999999999999999 999999984 799999999 345
Q ss_pred hccccEEEEEecCCeEe
Q 019066 282 LSLTDRARIRTYLGELL 298 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv 298 (346)
.++||++++ |++|+++
T Consensus 205 ~~~~d~v~~-l~~g~~~ 220 (220)
T TIGR02982 205 LDVADRIVH-MEDGKLL 220 (220)
T ss_pred HhhCCEEEE-EECCEEC
Confidence 679999975 9999863
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=301.84 Aligned_cols=196 Identities=12% Similarity=0.046 Sum_probs=150.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-----p~~G~i~~~~~~~~~~~ 71 (490)
T PRK10938 3 SLQISQGTFRLSDTK---T---LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSHITRLS 71 (490)
T ss_pred eEEEEeEEEEcCCee---e---cccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCceEEECCcccccCC
Confidence 699999999997533 4 777999999999999999999999999999999999 99999999987753100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
... .++.+++++|+.... +..+....+..++.+++..+ ...++++.++++.+++.+
T Consensus 72 ---~~~-~~~~i~~~~q~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~--------- 127 (490)
T PRK10938 72 ---FEQ-LQKLVSDEWQRNNTD--MLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITA--------- 127 (490)
T ss_pred ---HHH-HHHHhceeccCcchh--hcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHh---------
Confidence 001 122456777764321 00010011122444554321 123567889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|++|| +.+.
T Consensus 128 --------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~ 199 (490)
T PRK10938 128 --------LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIP 199 (490)
T ss_pred --------hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 56899999999999999999999 999999984 789999999 5788
Q ss_pred ccccEEEEEecCCeEeecCCccccccC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++||++++ |++|+++..|++++++..
T Consensus 200 ~~~d~v~~-l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 200 DFVQFAGV-LADCTLAETGEREEILQQ 225 (490)
T ss_pred hhCCEEEE-EECCEEEEeCCHHHHhcc
Confidence 99999975 999999999998877654
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=272.31 Aligned_cols=190 Identities=15% Similarity=0.150 Sum_probs=144.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC----CCceEEECceeCCCcccccccccCCCCccceeec
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS----ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD 167 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p----~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d 167 (346)
|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++. .....++.++|++|+
T Consensus 2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~~~~~G~i~~~g~~~~------~~~~~~~~i~~~~q~ 70 (230)
T TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-----PGLTQTSGEILLDGRPLL------PLSIRGRHIATIMQN 70 (230)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CccCccccEEEECCEech------hhhhhhheeEEEecC
Confidence 566999999999999999999999999999999999 8 8999999999875 112223467888888
Q ss_pred cc-ccc-cc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCC
Q 019066 168 TR-SLS-DD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 244 (346)
Q Consensus 168 ~~-~~~-~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~ 244 (346)
.. .+. .+ +.+++. +...... ......++++.++++.+++.+. ....++.+.
T Consensus 71 ~~~~~~~~~t~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~--------------~~~~~~~~~ 124 (230)
T TIGR02770 71 PRTAFNPLFTMGNHAI-----------ETLRSLG-KLSKQARALILEALEAVGLPDP--------------EEVLKKYPF 124 (230)
T ss_pred chhhcCcccCHHHHHH-----------HHHHHcC-ccHHHHHHHHHHHHHHcCCCch--------------HHHHhCChh
Confidence 64 221 12 333332 2111111 1123345678899999999730 004578899
Q ss_pred CCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCe
Q 019066 245 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGE 296 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~ 296 (346)
+||||||||++||||| ||||++||. +.|||++|| +.+..+||++++ |++|+
T Consensus 125 ~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~-l~~G~ 203 (230)
T TIGR02770 125 QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAV-MDDGR 203 (230)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCE
Confidence 9999999999999999 999999883 689999999 567889999965 99999
Q ss_pred EeecCCccccccCCCCCChHHHH
Q 019066 297 LLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 297 iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+++.|++++++..+...+.+.++
T Consensus 204 i~~~~~~~~~~~~~~~~~~~~~~ 226 (230)
T TIGR02770 204 IVERGTVKEIFYNPKHETTRKLL 226 (230)
T ss_pred EEEeCCHHHHHhCcCCHHHHHHH
Confidence 99999999998776555544343
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=273.45 Aligned_cols=202 Identities=13% Similarity=0.113 Sum_probs=145.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh--ccCCCCCCCCceEEECceeC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl--~~~~~~~p~~G~I~~~g~~i 145 (346)
.++|+++||++.|++.. + |++|||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|+++|.++
T Consensus 5 ~~~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~-----~~~G~i~~~g~~~ 73 (252)
T CHL00131 5 KPILEIKNLHASVNENE---I---LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK-----ILEGDILFKGESI 73 (252)
T ss_pred CceEEEEeEEEEeCCEE---e---eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc-----CCCceEEECCEEc
Confidence 45799999999997532 4 7779999999999999999999999999999998 57 8999999999987
Q ss_pred CCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
.... .....+..+++++|+...+.++ +.+++.+.... ....... .........+++.++++.+++.+.
T Consensus 74 ~~~~---~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~--- 142 (252)
T CHL00131 74 LDLE---PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNS--KRKFQGL---PELDPLEFLEIINEKLKLVGMDPS--- 142 (252)
T ss_pred ccCC---hhhhheeeEEEEeccccccccccHHHHHHHhhhh--hhccccc---ccccHHHHHHHHHHHHHHcCCchh---
Confidence 5210 0011112356677776555444 34443321110 0000000 000112334677889999999732
Q ss_pred ccceeeeeechhhhcccCCC-CCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
..++.+. .|||||+||++||||| ||||++||. |.|+|++||
T Consensus 143 -------------~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH 209 (252)
T CHL00131 143 -------------FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209 (252)
T ss_pred -------------hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 2467776 5999999999999999 999999984 789999999
Q ss_pred --hhhhcc-ccEEEEEecCCeEeecCCccc
Q 019066 279 --GDLLSL-TDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 279 --~~~~~~-aDri~v~l~~G~iv~~g~~~~ 305 (346)
+.+..+ ||++++ |++|++++.|+++.
T Consensus 210 ~~~~~~~~~~d~i~~-l~~G~i~~~~~~~~ 238 (252)
T CHL00131 210 YQRLLDYIKPDYVHV-MQNGKIIKTGDAEL 238 (252)
T ss_pred CHHHHHhhhCCEEEE-EeCCEEEEecChhh
Confidence 456665 899964 99999999998873
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=298.78 Aligned_cols=192 Identities=14% Similarity=0.200 Sum_probs=148.5
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccccc
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 152 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~ 152 (346)
++||+++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ~~nl~~~~~~~~---i---l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~--- 66 (491)
T PRK10982 1 MSNISKSFPGVK---A---LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-----KDSGSILFQGKEIDFKS--- 66 (491)
T ss_pred CCceEEEeCCEE---e---eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCEECCCCC---
Confidence 478999997532 4 777999999999999999999999999999999999 99999999999874110
Q ss_pred ccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC--CChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 153 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR--SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 153 ~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|++|+...+..+ ++.+|+.++...... .......+++.++++.+++..
T Consensus 67 ~~~~~~~~i~~v~q~~~~~~~~----------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------- 126 (491)
T PRK10982 67 SKEALENGISMVHQELNLVLQR----------SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI---------- 126 (491)
T ss_pred HHHHHhCCEEEEecccccccCC----------CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC----------
Confidence 1111234567777776444332 344444433210000 122344567889999999986
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++||||| ||||++||. |.|+|+||| +.+..
T Consensus 127 -------~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~ 199 (491)
T PRK10982 127 -------DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQ 199 (491)
T ss_pred -------CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 45888999999999999999999 999999984 789999999 57888
Q ss_pred cccEEEEEecCCeEeecCCcccc
Q 019066 284 LTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+||++++ |++|++++.|+++++
T Consensus 200 ~~d~i~~-l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 200 LCDEITI-LRDGQWIATQPLAGL 221 (491)
T ss_pred hCCEEEE-EECCEEEeecChhhC
Confidence 9999975 999999999988765
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=268.44 Aligned_cols=190 Identities=12% Similarity=0.187 Sum_probs=162.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|++++|+++|++.. | ++|+||++++|++++++|||||||||++|+|.|++. |++|+|.++|.++.
T Consensus 2 ~L~ie~vtK~Fg~k~---a---v~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-----~~~G~I~~~g~~~~--- 67 (300)
T COG4152 2 ALEIEGVTKSFGDKK---A---VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-----PTEGEITWNGGPLS--- 67 (300)
T ss_pred ceEEecchhccCcee---e---ecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-----ccCceEEEcCcchh---
Confidence 589999999998754 5 555999999999999999999999999999999999 99999999999886
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
...+.+|||.|.+..++..+ |.+.+.++.. ....+..+.++++..+|+++++..
T Consensus 68 -----~~~~~rIGyLPEERGLy~k~tv~dql~yla~------------LkGm~~~e~~~~~~~wLer~~i~~-------- 122 (300)
T COG4152 68 -----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAE------------LKGMPKAEIQKKLQAWLERLEIVG-------- 122 (300)
T ss_pred -----hhhhhhcccChhhhccCccCcHHHHHHHHHH------------hcCCcHHHHHHHHHHHHHhccccc--------
Confidence 22244678888887777666 5555544432 124567888999999999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
...++..+||.|++|++.+..|+ |||+||||+ |.|||++|| ..+
T Consensus 123 ---------~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~v 193 (300)
T COG4152 123 ---------KKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHV 193 (300)
T ss_pred ---------cccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHH
Confidence 45888999999999999999998 999999996 999999999 689
Q ss_pred hccccEEEEEecCCeEeecCCcccccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
.++||++++ |++|+.|-+|+.+++-.
T Consensus 194 EeLCD~llm-L~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 194 EELCDRLLM-LKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHHhhhhhe-ecCCceEEeccHHHHHH
Confidence 999999975 99999999999887755
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=297.74 Aligned_cols=195 Identities=15% Similarity=0.186 Sum_probs=149.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC--CCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p--~~G~I~~~g~~i~~ 147 (346)
+|+++||+++|++.. + |++|||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++..
T Consensus 1 ~l~i~~l~~~~~~~~---i---l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-----~~~~~G~i~~~g~~~~~ 69 (500)
T TIGR02633 1 LLEMKGIVKTFGGVK---A---LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-----HGTWDGEIYWSGSPLKA 69 (500)
T ss_pred CEEEEeEEEEeCCeE---e---ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCCCeEEEECCEECCC
Confidence 489999999997532 4 677999999999999999999999999999999998 6 79999999998751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhc--c-CCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI--R-RSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~--~-~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
.. .....++.++|++|+...+..+ +.+|+ .++.... . ........+++.++++.+++.+..
T Consensus 70 ~~---~~~~~~~~i~~v~q~~~~~~~~tv~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~- 134 (500)
T TIGR02633 70 SN---IRDTERAGIVIIHQELTLVPELSVAENI-----------FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN- 134 (500)
T ss_pred CC---HHHHHhCCEEEEeeccccCCCCcHHHHH-----------HhhccccccccccCHHHHHHHHHHHHHHcCCCCCc-
Confidence 10 1111234567888876544433 44444 3322110 0 012234456788999999997621
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
.++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 135 ---------------~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitH 199 (500)
T TIGR02633 135 ---------------VTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISH 199 (500)
T ss_pred ---------------ccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 2567899999999999999999 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+.+..+||++++ |++|+++..++++++
T Consensus 200 d~~~~~~~~d~i~~-l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 200 KLNEVKAVCDTICV-IRDGQHVATKDMSTM 228 (500)
T ss_pred cHHHHHHhCCEEEE-EeCCeEeeecCcccC
Confidence 578889999964 999999999887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=255.06 Aligned_cols=217 Identities=17% Similarity=0.129 Sum_probs=166.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee---
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~--- 144 (346)
.|.+++.++++.|++..- .+||||++.|||+++|||+||||||||++||++-+. |++|.|.+.-.+
T Consensus 4 ~PLL~V~~lsk~Yg~~~g------c~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-----p~~G~v~Y~~r~~~~ 72 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKG------CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-----PDAGTVTYRMRDGQP 72 (258)
T ss_pred CcceeehhhhhhhCCCcC------ccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-----CCCCeEEEEcCCCCc
Confidence 568999999999987654 788999999999999999999999999999999999 999999997533
Q ss_pred --CCCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 145 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 145 --i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
+..++..+...+.|...+|+-|.++.--.+ | +...||..-+...+...-...++.+.++|+.+.++..
T Consensus 73 ~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~V---------SAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~ 143 (258)
T COG4107 73 RDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQV---------SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLD 143 (258)
T ss_pred hhHhhhchHHHHHHhhhccceeecCccccceeee---------ccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcc
Confidence 222333333334455556665555422111 1 2222333222222222234567888899999999864
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEE
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVV 275 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tvii 275 (346)
..+..|.++||||+||+.|||-| ||||.+||- +.+++|
T Consensus 144 ----------------RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~vi 207 (258)
T COG4107 144 ----------------RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI 207 (258)
T ss_pred ----------------cccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEE
Confidence 35888999999999999999999 999999873 889999
Q ss_pred Eech--hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 276 VTHG--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 276 iTH~--~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
|||+ .+.-++||.. +|++|++++.|-++.++..|.++|+.-+..+
T Consensus 208 VTHDl~VarLla~rlm-vmk~g~vve~GLTDrvLDDP~hPYTQLLVSs 254 (258)
T COG4107 208 VTHDLAVARLLADRLM-VMKQGQVVESGLTDRVLDDPHHPYTQLLVSS 254 (258)
T ss_pred EechhHHHHHhhhcce-eecCCCEeccccccccccCCCCchHHHHHHH
Confidence 9995 4566899996 4999999999999999999999998776654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=287.14 Aligned_cols=191 Identities=15% Similarity=0.206 Sum_probs=157.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.+++++++|.|++ ++| +++|||+|++||+.||+|+||||||||+++|.|+|+ |++|+|+++|+.+..
T Consensus 2 ~~~l~~~~itK~f~~---~~A---nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-----P~~GeI~v~G~~v~~ 70 (501)
T COG3845 2 EPALEMRGITKRFPG---VVA---NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-----PDSGEIRVDGKEVRI 70 (501)
T ss_pred CceEEEeccEEEcCC---EEe---cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-----CCcceEEECCEEecc
Confidence 346999999999984 457 555999999999999999999999999999999999 999999999999862
Q ss_pred cccccccccCCCCccceeecc-cccccchhhchHhhHH-HHHhhhhcchhh--ccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKL-WIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~-~~~~~~v~qn~~~~~~-~v~~~i~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
. .+.|. +.-++||+|++.+++. +|.+||.++... ....+....++++.++.++.||+-+
T Consensus 71 ~---------------sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-- 133 (501)
T COG3845 71 K---------------SPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-- 133 (501)
T ss_pred C---------------CHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC--
Confidence 1 12222 2334556666666655 777777777542 2234567788999999999999853
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
.+++..+||-||||||.|-+|| ||||+-|-+ |+|||+|||
T Consensus 134 ---------------p~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITH 198 (501)
T COG3845 134 ---------------PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198 (501)
T ss_pred ---------------ccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 3788999999999999999999 999999754 999999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCC
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
+++.++|||+.| |+.|+++..-+
T Consensus 199 KL~Ev~~iaDrvTV-LR~Gkvvgt~~ 223 (501)
T COG3845 199 KLKEVMAIADRVTV-LRRGKVVGTVD 223 (501)
T ss_pred cHHHHHHhhCeeEE-EeCCeEEeeec
Confidence 899999999986 99999987765
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=268.01 Aligned_cols=173 Identities=18% Similarity=0.186 Sum_probs=135.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ... ..++++|+...+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~------~~~---~~~~v~q~~~l~ 66 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-----PTSGGVILEGKQITE------PGP---DRMVVFQNYSLL 66 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC------CCh---hheEEecCcccC
Confidence 356999999999999999999999999999999999 999999999998751 110 125667766554
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
..+ +.+|+.+.... ..........++++.++++.+++.+ ..++++.+|||||
T Consensus 67 ~~~tv~e~l~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgG~ 119 (230)
T TIGR01184 67 PWLTVRENIALAVDR----------VLPDLSKSERRAIVEEHIALVGLTE-----------------AADKRPGQLSGGM 119 (230)
T ss_pred CCCCHHHHHHHHHHh----------cccCCCHHHHHHHHHHHHHHcCCHH-----------------HHcCChhhCCHHH
Confidence 433 55554432100 0011123344567889999999986 4688899999999
Q ss_pred HHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCC
Q 019066 251 QYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 251 rQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
|||++||||| ||||++||. |+|+|+||| +.+..+||++++ |++|++++.|+
T Consensus 120 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~-l~~G~i~~~~~ 198 (230)
T TIGR01184 120 KQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVM-LTNGPAANIGQ 198 (230)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE-EeCCcEecccC
Confidence 9999999999 999999984 689999999 567889999965 99999999998
Q ss_pred cccc
Q 019066 303 AKQI 306 (346)
Q Consensus 303 ~~~l 306 (346)
..++
T Consensus 199 ~~~~ 202 (230)
T TIGR01184 199 ILEV 202 (230)
T ss_pred ceec
Confidence 7766
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=268.55 Aligned_cols=189 Identities=12% Similarity=0.159 Sum_probs=136.9
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..++|+++|++++|++.....+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~ 79 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLV---LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-----PQGGQVLLDGKPIS 79 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCcc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCCchH
Confidence 4678999999999975321124 667999999999999999999999999999999999 99999999998764
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC--ChHHHHHHHHHHHHHc--CCCccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS--DSSSLRNRMRCKAHKI--GCEPSV 222 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~--~l~~~~ 222 (346)
.. .....++.++|++| ++.++..++.+|+.++....... ........+.++++.+ |+.+
T Consensus 80 ~~----~~~~~~~~i~~~~q-----------~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-- 142 (226)
T cd03248 80 QY----EHKYLHSKVSLVGQ-----------EPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDT-- 142 (226)
T ss_pred Hc----CHHHHHhhEEEEec-----------ccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccc--
Confidence 10 00111223445444 44445557777776543211000 0001112245667777 6665
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 278 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH 278 (346)
.+++++.+|||||+||++||||| ||||++||. +.|+|++||
T Consensus 143 ---------------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh 207 (226)
T cd03248 143 ---------------EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207 (226)
T ss_pred ---------------hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 35777999999999999999999 999999984 689999999
Q ss_pred --hhhhccccEEEEEecCCeE
Q 019066 279 --GDLLSLTDRARIRTYLGEL 297 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~i 297 (346)
+.+. .||++++ |++|++
T Consensus 208 ~~~~~~-~~d~i~~-l~~g~i 226 (226)
T cd03248 208 RLSTVE-RADQILV-LDGGRI 226 (226)
T ss_pred CHHHHH-hCCEEEE-ecCCcC
Confidence 4565 5999964 998874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=331.23 Aligned_cols=211 Identities=15% Similarity=0.105 Sum_probs=166.8
Q ss_pred hhhHHHHHHhhhhhhhhc--c----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRT--R----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~--~----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
.+..|+.++++.++.... . ....|+++|++|+|+......+ |+|+||+|++|+.++|+||||||||||+++
T Consensus 586 ~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sGSGKSTLl~l 662 (1622)
T PLN03130 586 VSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT---LSNINLDVPVGSLVAIVGSTGEGKTSLISA 662 (1622)
T ss_pred HHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCce---eeceeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 334567777754432111 1 1235999999999975321114 777999999999999999999999999999
Q ss_pred HhhhccCCCCCCCC-ceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 122 ISKVFENDKFASER-AQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 122 L~gl~~~~~~~p~~-G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
|+|.++ |++ |+|.+.+ .++|++|++.. +..++++||.++..
T Consensus 663 LlG~~~-----~~~GG~I~l~~-----------------~Iayv~Q~p~L-----------fngTIreNI~fg~~----- 704 (1622)
T PLN03130 663 MLGELP-----PRSDASVVIRG-----------------TVAYVPQVSWI-----------FNATVRDNILFGSP----- 704 (1622)
T ss_pred HHHhhc-----cCCCceEEEcC-----------------eEEEEcCcccc-----------CCCCHHHHHhCCCc-----
Confidence 999999 999 8997533 23566665544 44556666665432
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
..+++..++++.++|.+++..+|+|++|+|||+|. +||||||||++||||+ |||||+||.
T Consensus 705 ---~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~------~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~ 775 (1622)
T PLN03130 705 ---FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGV------NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHV 775 (1622)
T ss_pred ---ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCC------CCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHH
Confidence 23567888999999999999999999999999965 8999999999999999 999999984
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| -.....||+|+ +|++|+|++.|+++++...
T Consensus 776 ~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii-~L~~G~i~e~Gt~~eL~~~ 829 (1622)
T PLN03130 776 GRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRII-LVHEGMIKEEGTYEELSNN 829 (1622)
T ss_pred HHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEE-EEeCCEEEEeCCHHHHHhc
Confidence 789999999 34556699996 5999999999999988753
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=331.27 Aligned_cols=212 Identities=15% Similarity=0.115 Sum_probs=165.7
Q ss_pred hhhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
.+..|+.++++.+++.... ....|+++|++|+|+......+ |+|+||+|++||.++|+||||||||||+++
T Consensus 586 ~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~v---L~~inl~i~~Ge~vaIvG~sGSGKSTLl~l 662 (1495)
T PLN03232 586 VSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT---LSDINLEIPVGSLVAIVGGTGEGKTSLISA 662 (1495)
T ss_pred HHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHH
Confidence 3445677777655432111 1235999999999975311113 777999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|+|+++ |++|.+.. + ++.++|++|+ +.++..++++||.++..
T Consensus 663 LlG~~~-----~~~G~i~~----~------------~~~Iayv~Q~-----------p~Lf~gTIreNI~fg~~------ 704 (1495)
T PLN03232 663 MLGELS-----HAETSSVV----I------------RGSVAYVPQV-----------SWIFNATVRENILFGSD------ 704 (1495)
T ss_pred HhCCCc-----ccCCCEEE----e------------cCcEEEEcCc-----------cccccccHHHHhhcCCc------
Confidence 999999 99886631 1 1233455555 45555567777776531
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
..+++..++++.+++.+++..+|+|++|.|||+|. +||||||||++||||+ |||||+||.
T Consensus 705 --~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~------~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~ 776 (1495)
T PLN03232 705 --FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGV------NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776 (1495)
T ss_pred --cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCc------ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHH
Confidence 23467788899999999999999999999999965 8999999999999999 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| -.....||+|+ +|++|+|++.|++++++..
T Consensus 777 ~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii-~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 777 HQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRII-LVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred HHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEE-EEeCCEEEEecCHHHHHhc
Confidence 789999999 34556799996 5999999999999988753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=298.27 Aligned_cols=200 Identities=13% Similarity=0.123 Sum_probs=149.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC-CCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p-~~G~I~~~g~~i~ 146 (346)
.++|+++||++.|+.+....+ |+|+||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|+++.
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKR---VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP-----GRWEGEIFIDGKPVK 328 (506)
T ss_pred CceEEEecCcccccccccccc---ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCcEEEECCEECC
Confidence 457999999999952111124 666999999999999999999999999999999997 6 8999999999874
Q ss_pred CcccccccccCCCCccceeeccc---ccccc-hhhchHhhHHHHHhhhhcchhh-c-c--CCChHHHHHHHHHHHHHcCC
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELV-I-R--RSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~---~~~~~-v~qn~~~~~~~v~~~i~~~~~~-~-~--~~~~~~~~~~~~~~l~~~~l 218 (346)
... .....++.++|++|+.. .+..+ +.+|+ .++... . . ..+....++++.++++.+++
T Consensus 329 ~~~---~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 394 (506)
T PRK13549 329 IRN---PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNI-----------TLAALDRFTGGSRIDDAAELKTILESIQRLKV 394 (506)
T ss_pred CCC---HHHHHHCCCEEeCcchhhCCCcCCCCHHHHh-----------hhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence 111 01111335678888752 23222 44444 332110 0 0 01223445678899999999
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceE
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV 273 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tv 273 (346)
.+. ..++++.+||||||||++||||| ||||++||. |.||
T Consensus 395 ~~~----------------~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tv 458 (506)
T PRK13549 395 KTA----------------SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAI 458 (506)
T ss_pred cCC----------------CcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEE
Confidence 631 35888999999999999999999 999999984 8999
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
|++|| +.+.++|||++ +|++|+++..|+++++
T Consensus 459 i~~sHd~~~~~~~~d~v~-~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 459 IVISSELPEVLGLSDRVL-VMHEGKLKGDLINHNL 492 (506)
T ss_pred EEECCCHHHHHHhCCEEE-EEECCEEEEEeccccC
Confidence 99999 57889999996 4999999999887654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=300.16 Aligned_cols=198 Identities=15% Similarity=0.161 Sum_probs=146.2
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc--cCCCCCCCCceEEECc------
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNS------ 142 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~--~~~~~~p~~G~I~~~g------ 142 (346)
|+++|++++|++. . + |+++||+|.+||+++|+||||||||||+|+|+|++ + |++|+|.++|
T Consensus 1 l~~~~l~~~~~~~-~--~---l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~-----p~~G~i~~~~~~~~~~ 69 (520)
T TIGR03269 1 IEVKNLTKKFDGK-E--V---LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE-----PTSGRIIYHVALCEKC 69 (520)
T ss_pred CEEEEEEEEECCe-E--e---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC-----CCceEEEEeccccccc
Confidence 5799999999653 2 4 67799999999999999999999999999999996 7 8999999973
Q ss_pred -----------------eeCCC--cccc--cc--cccCCCCccceeec-ccccccchhhchHhhHHHHHhhhhcchhhcc
Q 019066 143 -----------------SVGDG--TYFL--QE--YTIPRGSNSFSLYD-TRSLSDDASDNINMIKLWIMEGVRHGELVIR 198 (346)
Q Consensus 143 -----------------~~i~~--~~~~--~~--~~~~r~~i~~~~~d-~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~ 198 (346)
.++.. .... .. ....++.+++++|+ ...+..+ ++.+|+.++.....
T Consensus 70 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----------tv~~~l~~~~~~~~ 139 (520)
T TIGR03269 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD----------TVLDNVLEALEEIG 139 (520)
T ss_pred cccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCC----------CHHHHHHHHHHHcC
Confidence 11100 0000 00 00112345566664 2222222 44455544332111
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC
Q 019066 199 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 269 (346)
.+..+.++++.++++.+++.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 140 -~~~~~~~~~~~~~l~~~gl~~-----------------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~ 201 (520)
T TIGR03269 140 -YEGKEAVGRAVDLIEMVQLSH-----------------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDP 201 (520)
T ss_pred -CCHHHHHHHHHHHHHHcCChh-----------------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCH
Confidence 223445678899999999987 46889999999999999999999 999999984
Q ss_pred -----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 270 -----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 270 -----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
|.|||+||| +.+..+||+++ +|++|+++..|++++++.
T Consensus 202 ~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~-~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 202 QTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI-WLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE-EEeCCEEeeecCHHHHHH
Confidence 789999999 56788999996 599999999998877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=271.44 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=142.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~~~~---v---l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~~~~---- 67 (251)
T PRK09544 3 SLVSLENVSVSFGQRR---V---LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-----PDEGVIKRNGKL---- 67 (251)
T ss_pred cEEEEeceEEEECCce---E---EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCcc----
Confidence 4799999999997543 3 777999999999999999999999999999999999 999999997621
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.++|++|+...+..+ ..++.+++.+.. ...++++.++++.+++.+
T Consensus 68 -----------~i~~v~q~~~~~~~l--------~~~~~~~~~~~~--------~~~~~~~~~~l~~~gl~~-------- 112 (251)
T PRK09544 68 -----------RIGYVPQKLYLDTTL--------PLTVNRFLRLRP--------GTKKEDILPALKRVQAGH-------- 112 (251)
T ss_pred -----------CEEEecccccccccc--------ChhHHHHHhccc--------cccHHHHHHHHHHcCChH--------
Confidence 346778775432111 012223332110 112345778999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| +.
T Consensus 113 ---------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 113 ---------LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred ---------HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 45888999999999999999999 999999983 689999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+..+||++++ |+ +++++.|++++++..
T Consensus 184 i~~~~d~i~~-l~-~~i~~~g~~~~~~~~ 210 (251)
T PRK09544 184 VMAKTDEVLC-LN-HHICCSGTPEVVSLH 210 (251)
T ss_pred HHHhCCEEEE-EC-CceEeeCCHHHHhCC
Confidence 7889999965 86 479999999888654
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=267.06 Aligned_cols=201 Identities=14% Similarity=0.104 Sum_probs=143.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh--ccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl--~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+|+++||++.|++.. + |+++||+|++|++++|+||||||||||+++|+|+ ++ |++|+|.++|.++..
T Consensus 1 ~i~~~nl~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~-----~~~G~i~~~g~~~~~ 69 (248)
T PRK09580 1 MLSIKDLHVSVEDKA---I---LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDLLE 69 (248)
T ss_pred CeEEEEEEEEeCCee---e---eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC-----CCceEEEECCCcccc
Confidence 489999999997532 4 7779999999999999999999999999999999 47 899999999987641
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. ......+..++|++|+...+..+ .+ ..+...+..++..... ..........+++.++++.+++.+.
T Consensus 70 ~---~~~~~~~~~i~~~~q~~~~~~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~------ 136 (248)
T PRK09580 70 L---SPEDRAGEGIFMAFQYPVEIPGV--SN-QFFLQTALNAVRSYRG-QEPLDRFDFQDLMEEKIALLKMPED------ 136 (248)
T ss_pred C---CHHHHhhcceEEEecCchhccch--hH-HHHHHHhhhhhhcccc-cccchHHHHHHHHHHHHHHcCCChh------
Confidence 1 01111234567888876544322 01 1111112222211000 0001122345677888999999642
Q ss_pred eeeeeechhhhcccCCC-CCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++.+. +||||||||++||||| ||||++||. +.|||++|| +
T Consensus 137 ----------~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~ 206 (248)
T PRK09580 137 ----------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR 206 (248)
T ss_pred ----------hcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 2455564 8999999999999999 999999984 789999999 4
Q ss_pred hhhcc-ccEEEEEecCCeEeecCCccc
Q 019066 280 DLLSL-TDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 280 ~~~~~-aDri~v~l~~G~iv~~g~~~~ 305 (346)
.+..+ ||++++ |++|+++..|+++.
T Consensus 207 ~~~~~~~d~i~~-l~~g~i~~~g~~~~ 232 (248)
T PRK09580 207 ILDYIKPDYVHV-LYQGRIVKSGDFTL 232 (248)
T ss_pred HHHhhhCCEEEE-EECCeEEEeCCHHH
Confidence 56666 899964 99999999988763
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=265.83 Aligned_cols=193 Identities=15% Similarity=0.181 Sum_probs=144.2
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+.++||+++|++.+ ...+ |+++||+|++||+++|+||||||||||+++|+|+++... |++|+|.++|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~--~~~G~i~~~g~~~~-- 75 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARI---LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGG--TTSGQILFNGQPRK-- 75 (226)
T ss_pred cceeecceeeeecCcccccc---ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCC--CCceEEEECCEECC--
Confidence 478999999996542 1225 666999999999999999999999999999999986221 58999999998874
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHH-HHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC-KAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~ 226 (346)
. ...++.+++++|+...+.++ +.+|+.+.... .............++.+ .++.+++.+
T Consensus 76 ----~-~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 135 (226)
T cd03234 76 ----P-DQFQKCVAYVRQDDILLPGLTVRETLTYTAIL---------RLPRKSSDAIRKKRVEDVLLRDLALTR------ 135 (226)
T ss_pred ----h-HHhcccEEEeCCCCccCcCCcHHHHHHHHHHh---------hcccccchHHHHHHHHHHHHHhhcchh------
Confidence 1 11244677888876665553 55555432210 00000011222234455 888888876
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEech--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG-- 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH~-- 279 (346)
..++.+.+|||||+||++||||| ||||++||. +.|+|++||+
T Consensus 136 -----------~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~ 204 (226)
T cd03234 136 -----------IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPR 204 (226)
T ss_pred -----------hhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 45788999999999999999999 999999984 7899999993
Q ss_pred -hhhccccEEEEEecCCeEeecC
Q 019066 280 -DLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 280 -~~~~~aDri~v~l~~G~iv~~g 301 (346)
.+..+||++++ |++|++++.|
T Consensus 205 ~~~~~~~d~i~~-l~~G~i~~~g 226 (226)
T cd03234 205 SDLFRLFDRILL-LSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCEEEE-EeCCEEEecC
Confidence 58899999965 9999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=262.19 Aligned_cols=179 Identities=19% Similarity=0.183 Sum_probs=132.7
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccccc
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQ 152 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~ 152 (346)
++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 1 i~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~~~~ 69 (206)
T TIGR03608 1 LKNISKKFGDKI---I---LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-----FDSGQVYLNGKETPPLNSKK 69 (206)
T ss_pred CcceEEEECCEE---E---EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEccccchhh
Confidence 479999997532 4 777999999999999999999999999999999999 99999999999863100000
Q ss_pred ccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeee
Q 019066 153 EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFV 232 (346)
Q Consensus 153 ~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 232 (346)
.....++.++|++|+...+... ++.+|+.++.... ........+++.++++.+++.+
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~~----------t~~e~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------------ 126 (206)
T TIGR03608 70 ASKFRREKLGYLFQNFALIENE----------TVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNL------------ 126 (206)
T ss_pred HHHHHHhCeeEEecchhhccCC----------cHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCchh------------
Confidence 0111234567777765544332 3334433322111 1123445677889999999976
Q ss_pred echhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhhcccc
Q 019066 233 VDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 286 (346)
Q Consensus 233 v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~~~aD 286 (346)
..++++.+|||||+||++||||| ||||++||. +.|+|++|| .....+||
T Consensus 127 -----~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d 201 (206)
T TIGR03608 127 -----KLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQAD 201 (206)
T ss_pred -----hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcC
Confidence 45888999999999999999999 999999983 789999999 33446899
Q ss_pred EEEE
Q 019066 287 RARI 290 (346)
Q Consensus 287 ri~v 290 (346)
++++
T Consensus 202 ~i~~ 205 (206)
T TIGR03608 202 RVIE 205 (206)
T ss_pred EEEe
Confidence 9953
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=263.09 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=137.9
Q ss_pred cCCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 66 RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 66 ~~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.+.++|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++
T Consensus 7 ~~~~~l~~~~l~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~i 75 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEP---V---FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-----VESGQIQIDGKTA 75 (214)
T ss_pred CCcceEEEeeEEEecCCce---e---eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCCeeEEECCEEc
Confidence 3456899999999997643 4 777999999999999999999999999999999999 9999999999987
Q ss_pred CCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
.. .. .++.++|++|+...+..+ +.+|+.+ ...... ...++.+.++++.+++.+
T Consensus 76 ~~------~~-~~~~i~~~~q~~~~~~~~t~~e~l~~-----------~~~~~~----~~~~~~~~~~l~~~~l~~---- 129 (214)
T PRK13543 76 TR------GD-RSRFMAYLGHLPGLKADLSTLENLHF-----------LCGLHG----RRAKQMPGSALAIVGLAG---- 129 (214)
T ss_pred cc------hh-hhhceEEeecCcccccCCcHHHHHHH-----------HHHhcC----CcHHHHHHHHHHHcCChh----
Confidence 51 11 123466777665444332 4444432 211100 113356778899999986
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||+ ||||++||. +.|+|++||
T Consensus 130 -------------~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 130 -------------YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred -------------hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 45888999999999999999999 999999984 799999999
Q ss_pred -hhhhccccEEEEEec
Q 019066 279 -GDLLSLTDRARIRTY 293 (346)
Q Consensus 279 -~~~~~~aDri~v~l~ 293 (346)
+++.++||++++ ++
T Consensus 197 ~~~~~~~~~~i~~-l~ 211 (214)
T PRK13543 197 AYAAPPVRTRMLT-LE 211 (214)
T ss_pred hhhhhhhcceEEE-Ee
Confidence 578899999964 64
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=266.01 Aligned_cols=170 Identities=15% Similarity=0.201 Sum_probs=129.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceee-cccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY-DTRS 170 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~-d~~~ 170 (346)
|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .....++.++|+++ +...
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~~~~-----~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-----PTSGEVRVAGLVPWK-----RRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCceEEEECCEEccc-----cchhhcccEEEEcCCcccc
Confidence 667999999999999999999999999999999999 999999999987531 01112335667663 3333
Q ss_pred cccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 171 LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 171 ~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
+..+ +.+++.+. .... ........+++.++++.+++.+ ..++++.+||||
T Consensus 107 ~~~~tv~e~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~gl~~-----------------~~~~~~~~LS~G 157 (236)
T cd03267 107 WWDLPVIDSFYLL-----------AAIY-DLPPARFKKRLDELSELLDLEE-----------------LLDTPVRQLSLG 157 (236)
T ss_pred CCCCcHHHHHHHH-----------HHHc-CCCHHHHHHHHHHHHHHcCChh-----------------HhcCChhhCCHH
Confidence 3222 44444322 1111 1122344567788999999976 457889999999
Q ss_pred HHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEeecC
Q 019066 250 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 250 qrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g 301 (346)
||||++||||| ||||++||. +.|+|++|| +.+..+||++++ |++|++++.|
T Consensus 158 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~-l~~G~i~~~g 236 (236)
T cd03267 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLV-IDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEE-EeCCEEEecC
Confidence 99999999999 999999983 689999999 567889999965 9999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=294.91 Aligned_cols=205 Identities=14% Similarity=0.190 Sum_probs=150.0
Q ss_pred CCcEEEeeeEEEeCC---CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC-ce
Q 019066 68 GSLTDAKNKILSYTP---GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SS 143 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~---~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~-g~ 143 (346)
.++|+++||+++|++ +.. .+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++ |.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~-~i---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~g~ 347 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVV-KA---VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-----PTSGEVNVRVGD 347 (520)
T ss_pred CceEEEeccEEEeccCCCCCc-eE---EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEecCC
Confidence 568999999999953 211 24 777999999999999999999999999999999999 999999996 64
Q ss_pred e---CCCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC
Q 019066 144 V---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 219 (346)
Q Consensus 144 ~---i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 219 (346)
+ +... ........++.++|++|+...+..+ +.+|+. +.... ..+....++++.++++.+++.
T Consensus 348 ~~~~~~~~-~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~-----------~~~~~--~~~~~~~~~~~~~~l~~~~l~ 413 (520)
T TIGR03269 348 EWVDMTKP-GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLT-----------EAIGL--ELPDELARMKAVITLKMVGFD 413 (520)
T ss_pred cccccccc-chhhHHHHhhhEEEEccCcccCCCCcHHHHHH-----------HHHHc--CCCHHHHHHHHHHHHHhCCCC
Confidence 3 2100 0000011133567777775544333 444443 22110 011233456788999999997
Q ss_pred cccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceE
Q 019066 220 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPV 273 (346)
Q Consensus 220 ~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tv 273 (346)
+... .+.+++++.+||||||||++||||| ||||++||. |.||
T Consensus 414 ~~~~------------~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 481 (520)
T TIGR03269 414 EEKA------------EEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTF 481 (520)
T ss_pred Cccc------------hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEE
Confidence 4100 0025889999999999999999999 999999984 7899
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
|+||| +.+.++|||+++ |++|++++.|++++++.
T Consensus 482 i~vsHd~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 482 IIVSHDMDFVLDVCDRAAL-MRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEEeCCHHHHHHhCCEEEE-EECCEEEEECCHHHHHh
Confidence 99999 578889999965 99999999998877643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=293.89 Aligned_cols=183 Identities=11% Similarity=0.123 Sum_probs=139.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|+++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 322 ~i~~~~v~f~y~~~~~--~---l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~-- 389 (547)
T PRK10522 322 TLELRNVTFAYQDNGF--S---VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVTA-- 389 (547)
T ss_pred eEEEEEEEEEeCCCCe--E---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCC--
Confidence 5999999999975443 3 777999999999999999999999999999999999 999999999999861
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
+...+.+...++++|++.++..++.+|- ....++.+.++++.+++..... .+++.
T Consensus 390 -------------~~~~~~~~~i~~v~q~~~lf~~ti~~n~-----------~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 444 (547)
T PRK10522 390 -------------EQPEDYRKLFSAVFTDFHLFDQLLGPEG-----------KPANPALVEKWLERLKMAHKLE-LEDGR 444 (547)
T ss_pred -------------CCHHHHhhheEEEecChhHHHHhhcccc-----------CchHHHHHHHHHHHcCCchhhh-ccccC
Confidence 1111222233445555556666655540 1233456778899998876431 11111
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-~~~~ 282 (346)
-...+||||||||++||||| ||||++||. ++|+|+||| ....
T Consensus 445 -----------~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~ 513 (547)
T PRK10522 445 -----------ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF 513 (547)
T ss_pred -----------CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHH
Confidence 01458999999999999999 999999873 689999999 4556
Q ss_pred ccccEEEEEecCCeEeecC
Q 019066 283 SLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g 301 (346)
..||+|+ +|++|++++..
T Consensus 514 ~~~d~i~-~l~~G~i~e~~ 531 (547)
T PRK10522 514 IHADRLL-EMRNGQLSELT 531 (547)
T ss_pred HhCCEEE-EEECCEEEEec
Confidence 6799996 59999999873
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=261.28 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=134.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
+.++++++.|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 23 l~~~~~~~~~~~~~---i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----p~~G~i~~~g~~~~~--- 88 (224)
T cd03220 23 LGILGRKGEVGEFW---A---LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVTVRGRVSSL--- 88 (224)
T ss_pred hhhhhhhhhcCCeE---E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEchh---
Confidence 77888999997643 3 777999999999999999999999999999999999 999999999987530
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.. . ...++ ....+.+|+.+ +.... .......++++.++++.+++.+
T Consensus 89 -----~~-~--~~~~~----~~~tv~enl~~-----------~~~~~-~~~~~~~~~~~~~~l~~~~l~~---------- 134 (224)
T cd03220 89 -----LG-L--GGGFN----PELTGRENIYL-----------NGRLL-GLSRKEIDEKIDEIIEFSELGD---------- 134 (224)
T ss_pred -----hc-c--cccCC----CCCcHHHHHHH-----------HHHHc-CCCHHHHHHHHHHHHHHcCChh----------
Confidence 00 0 01111 01124444433 21111 1122344567888999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
.+++++.+||||||||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 135 -------~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 135 -------FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 45788999999999999999999 999999984 689999999 56788
Q ss_pred cccEEEEEecCCeEeecC
Q 019066 284 LTDRARIRTYLGELLGIP 301 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g 301 (346)
+||++++ |++|++++.|
T Consensus 208 ~~d~i~~-l~~G~i~~~g 224 (224)
T cd03220 208 LCDRALV-LEKGKIRFDG 224 (224)
T ss_pred hCCEEEE-EECCEEEecC
Confidence 9999965 9999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=294.09 Aligned_cols=194 Identities=11% Similarity=0.104 Sum_probs=146.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|+ . + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 263 ~~~l~~~~l~~~~~--~---~---l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----p~~G~I~~~g~~~~~ 329 (510)
T PRK09700 263 ETVFEVRNVTSRDR--K---K---VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-----RAGGEIRLNGKDISP 329 (510)
T ss_pred CcEEEEeCccccCC--C---c---ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCEECCC
Confidence 45899999999763 2 3 777999999999999999999999999999999999 999999999988741
Q ss_pred cccccccccCCCCccceeecc---cccccchhhchHhhHHHHHhhhhcchhh----c----cCCChHHHHHHHHHHHHHc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDT---RSLSDDASDNINMIKLWIMEGVRHGELV----I----RRSDSSSLRNRMRCKAHKI 216 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~---~~~~~~v~qn~~~~~~~v~~~i~~~~~~----~----~~~~~~~~~~~~~~~l~~~ 216 (346)
.. .....++.++|++|+. ..+..+ ++.+|+.++... . ........++++.++++.+
T Consensus 330 ~~---~~~~~~~~i~~v~q~~~~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 396 (510)
T PRK09700 330 RS---PLDAVKKGMAYITESRRDNGFFPNF----------SIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL 396 (510)
T ss_pred CC---HHHHHHCCcEEccCccccCCCcCCC----------cHHHHhccccccccccccccccccChHHHHHHHHHHHHhc
Confidence 10 0011133567887763 223222 333444332110 0 0011223345678999999
Q ss_pred CCC-cccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------C
Q 019066 217 GCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 270 (346)
Q Consensus 217 ~l~-~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g 270 (346)
++. + ..++++.+||||||||++||||| ||||++||. |
T Consensus 397 ~l~~~-----------------~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g 459 (510)
T PRK09700 397 ALKCH-----------------SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG 459 (510)
T ss_pred CCCCC-----------------CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCC
Confidence 996 4 35889999999999999999999 999999984 8
Q ss_pred ceEEEEec--hhhhccccEEEEEecCCeEeecCCccc
Q 019066 271 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 271 ~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 305 (346)
.|||+||| +.+..+|||+++ |++|++++.++..+
T Consensus 460 ~tvi~vsHd~~~~~~~~d~i~~-l~~G~i~~~~~~~~ 495 (510)
T PRK09700 460 KVILMVSSELPEIITVCDRIAV-FCEGRLTQILTNRD 495 (510)
T ss_pred CEEEEEcCCHHHHHhhCCEEEE-EECCEEEEEecCcc
Confidence 89999999 578899999964 99999998876633
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=312.82 Aligned_cols=227 Identities=13% Similarity=0.093 Sum_probs=188.1
Q ss_pred hhhhhHHHHHHhhhhhhhhc----c-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCC
Q 019066 46 QRRRDAVFREVLQSYDQLRT----R-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 114 (346)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~----~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsG 114 (346)
...+.+|+.+..+.++|.+- . ....|+|+|++.+|..+.+ .+ |+||||+|++||.+||||.+|||
T Consensus 1103 ~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp-~V---Lk~is~~I~p~eKVGIVGRTGaG 1178 (1381)
T KOG0054|consen 1103 NMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLP-LV---LKGISFTIKPGEKVGIVGRTGAG 1178 (1381)
T ss_pred cchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCc-ch---hcCceEEEcCCceEEEeCCCCCC
Confidence 44556788888876555111 0 1236999999999977643 25 66699999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccC--CCCccceeecccccccchhhchHhhHHHHHhhhhc
Q 019066 115 KSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP--RGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH 192 (346)
Q Consensus 115 KSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~--r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~ 192 (346)
||||+++|-++.+ |.+|+|.+||.|+. ...+. |++++.+|||+.+|.|++..|+..+.
T Consensus 1179 KSSL~~aLFRl~e-----~~~G~I~IDgvdI~------~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~--------- 1238 (1381)
T KOG0054|consen 1179 KSSLILALFRLVE-----PAEGEILIDGVDIS------KIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD--------- 1238 (1381)
T ss_pred HHHHHHHHHHhcC-----ccCCeEEEcCeecc------cccHHHHHhcCeeeCCCCceecCccccccCccc---------
Confidence 9999999999999 99999999999997 33332 55677777777777777766665432
Q ss_pred chhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------Ccc
Q 019066 193 GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCP 263 (346)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEP 263 (346)
+-.++++.++|+.++|.+.+.++|.|+|+.|.|.| .++|-||||.+++|||| ||+
T Consensus 1239 ----------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG------~N~SvGQRQLlCLARALLr~skILvLDEA 1302 (1381)
T KOG0054|consen 1239 ----------EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGG------ENFSVGQRQLLCLARALLRKSKILVLDEA 1302 (1381)
T ss_pred ----------ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCC------ccCChHHHHHHHHHHHHhccCCEEEEecc
Confidence 33467899999999999999999999999999995 49999999999999999 999
Q ss_pred ccCCCC---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 264 YLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 264 ts~Ld~---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
|++.|. ++|||.|+| +.+.+ ||||+| |++|+++|.++|.++++++...+
T Consensus 1303 TAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlV-ld~G~v~EfdsP~~Ll~~~~S~f 1368 (1381)
T KOG0054|consen 1303 TASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLV-LDAGRVVEFDSPAELLSDKDSLF 1368 (1381)
T ss_pred cccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEE-eeCCeEeecCChHHHHhCCcchH
Confidence 999984 999999999 56777 999965 99999999999999998866543
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=252.41 Aligned_cols=181 Identities=10% Similarity=0.081 Sum_probs=143.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
++++++.+.-++.. + |+++||++++||+++|+||||||||||+|+++.+.. |++|.++|.|+++..
T Consensus 4 le~kq~~y~a~~a~---i---l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-----p~~G~l~f~Ge~vs~--- 69 (223)
T COG4619 4 LELKQVGYLAGDAK---I---LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-----PTSGTLLFEGEDVST--- 69 (223)
T ss_pred hHHHHHHhhcCCCe---e---ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-----CCCceEEEcCccccc---
Confidence 45555554433332 3 777999999999999999999999999999999999 999999999999861
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
+.+...|.-..|+.|.+.+|..+|.+|+.|+...+.. ...+..+..+++++++++.+
T Consensus 70 ------------~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~r---r~dr~aa~~llar~~l~~~~-------- 126 (223)
T COG4619 70 ------------LKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR---RPDRAAALDLLARFALPDSI-------- 126 (223)
T ss_pred ------------cChHHHHHHHHHHHcCccccccchhhccccchHHhcc---CCChHHHHHHHHHcCCchhh--------
Confidence 2233333344455566666677777777777665433 22457788899999999864
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
+++...+|||||+||++|+|-| |||||+||+ +.+++.||| +.+.
T Consensus 127 --------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~ 198 (223)
T COG4619 127 --------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAI 198 (223)
T ss_pred --------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHh
Confidence 7899999999999999999998 999999985 889999999 5678
Q ss_pred ccccEEEEEecCCeE
Q 019066 283 SLTDRARIRTYLGEL 297 (346)
Q Consensus 283 ~~aDri~v~l~~G~i 297 (346)
+.+|+++ .+..|.+
T Consensus 199 rha~k~i-tl~~G~~ 212 (223)
T COG4619 199 RHADKVI-TLQPGHA 212 (223)
T ss_pred hhhheEE-EeccCcc
Confidence 8999995 5887764
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=254.56 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=121.9
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+++||+++|++. . + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~~~~l~~~~~~~-~--~---l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-----~~~G~v~~~g~~~~~---- 65 (180)
T cd03214 1 EVENLSVGYGGR-T--V---LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-----PSSGEILLDGKDLAS---- 65 (180)
T ss_pred CeeEEEEEECCe-e--e---EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCc----
Confidence 578999999753 2 4 777999999999999999999999999999999999 999999999988741
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
+.....+...++++| +++.+++.+
T Consensus 66 -----------~~~~~~~~~i~~~~q----------------------------------~l~~~gl~~----------- 89 (180)
T cd03214 66 -----------LSPKELARKIAYVPQ----------------------------------ALELLGLAH----------- 89 (180)
T ss_pred -----------CCHHHHHHHHhHHHH----------------------------------HHHHcCCHh-----------
Confidence 100000001111111 677788876
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhc
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~ 283 (346)
..++.+.+|||||+||++||||| ||||++||. +.|+|++|| +.+.+
T Consensus 90 ------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 90 ------LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred ------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 34778899999999999999999 999999983 579999999 56778
Q ss_pred cccEEEEEecCCeEeecC
Q 019066 284 LTDRARIRTYLGELLGIP 301 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g 301 (346)
+||++++ |++|++++.|
T Consensus 164 ~~d~~~~-l~~g~i~~~~ 180 (180)
T cd03214 164 YADRVIL-LKDGRIVAQG 180 (180)
T ss_pred hCCEEEE-EECCEEEecC
Confidence 9999965 9999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=259.07 Aligned_cols=174 Identities=17% Similarity=0.182 Sum_probs=134.6
Q ss_pred EEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++||+++|++... ..+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 l~~~~l~~~~~~~~~~~~~i---l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-----~~~G~i~~~g-~---- 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFT---LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPG-S---- 67 (204)
T ss_pred CEEeEEEEecCCCCccccce---eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-----CCCCeEEEcC-E----
Confidence 579999999976420 014 777999999999999999999999999999999999 9999999988 1
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
++|++|++..+ ..++.+|+.++... . .++..++++.+++...+..+|.|
T Consensus 68 ------------i~~~~q~~~l~-----------~~t~~enl~~~~~~-----~---~~~~~~~~~~~~l~~~~~~~~~~ 116 (204)
T cd03250 68 ------------IAYVSQEPWIQ-----------NGTIRENILFGKPF-----D---EERYEKVIKACALEPDLEILPDG 116 (204)
T ss_pred ------------EEEEecCchhc-----------cCcHHHHhccCCCc-----C---HHHHHHHHHHcCcHHHHHhccCc
Confidence 25666665433 23555665543211 1 12345567777777767777777
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
+++.++.. +.+||+|||||++||||| ||||++||. +.|+|++|| +.
T Consensus 117 ~~~~~~~~------~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~ 190 (204)
T cd03250 117 DLTEIGEK------GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL 190 (204)
T ss_pred ccceecCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH
Confidence 77776544 679999999999999999 999999874 689999999 45
Q ss_pred hhccccEEEEEecCCe
Q 019066 281 LLSLTDRARIRTYLGE 296 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~ 296 (346)
+.. ||++++ |++|+
T Consensus 191 ~~~-~d~i~~-l~~G~ 204 (204)
T cd03250 191 LPH-ADQIVV-LDNGR 204 (204)
T ss_pred Hhh-CCEEEE-EeCCC
Confidence 666 999964 98874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=268.06 Aligned_cols=188 Identities=14% Similarity=0.174 Sum_probs=142.1
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
++++||++. . + |+++||+|++||+++|+||||||||||+++|+|+++ + +|+|.++|+++....
T Consensus 1 ~~~~~l~~~----~---~---l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-----~-~G~i~~~g~~i~~~~- 63 (248)
T PRK03695 1 MQLNDVAVS----T---R---LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-----G-SGSIQFAGQPLEAWS- 63 (248)
T ss_pred Ccccccchh----c---e---ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----C-CeEEEECCEecCcCC-
Confidence 357788875 1 3 777999999999999999999999999999999986 5 899999999874110
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
. ...++.++|++|+...+..+ ++.+|+.+.... ........+++.++++.+++.+
T Consensus 64 ~---~~~~~~i~~v~q~~~~~~~~----------tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~l~~---------- 118 (248)
T PRK03695 64 A---AELARHRAYLSQQQTPPFAM----------PVFQYLTLHQPD--KTRTEAVASALNEVAEALGLDD---------- 118 (248)
T ss_pred H---HHHhhheEEecccCccCCCc----------cHHHHHHhcCcc--CCCcHHHHHHHHHHHHHcCCHh----------
Confidence 0 00122356777665433222 344444433111 1112344567889999999986
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc----------------CccccCCCC----------------CceEEEEec
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tviiiTH 278 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++||
T Consensus 119 -------~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH 191 (248)
T PRK03695 119 -------KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSH 191 (248)
T ss_pred -------HhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 45888999999999999999876 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.+.++||++++ |++|++++.|++++++.
T Consensus 192 ~~~~~~~~~d~i~~-l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 192 DLNHTLRHADRVWL-LKQGKLLASGRRDEVLT 222 (248)
T ss_pred CHHHHHHhCCEEEE-EECCEEEEECCHHHHhC
Confidence 568899999965 99999999998877754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=255.98 Aligned_cols=173 Identities=12% Similarity=0.096 Sum_probs=132.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 ~l~~~~l~~~~~~~~---~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----p~~G~v~~~g~~~~~~- 68 (204)
T PRK13538 1 MLEARNLACERDERI---L---FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-----PDAGEVLWQGEPIRRQ- 68 (204)
T ss_pred CeEEEEEEEEECCEE---E---EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEEcccc-
Confidence 589999999997532 4 677999999999999999999999999999999999 9999999999887511
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.+++++++...+..+ ++.+|+.+...... ...++++.++++.+++.+
T Consensus 69 ----~~~~~~~~~~~~~~~~~~~~~----------tv~e~l~~~~~~~~----~~~~~~~~~~l~~~gl~~--------- 121 (204)
T PRK13538 69 ----RDEYHQDLLYLGHQPGIKTEL----------TALENLRFYQRLHG----PGDDEALWEALAQVGLAG--------- 121 (204)
T ss_pred ----hHHhhhheEEeCCccccCcCC----------cHHHHHHHHHHhcC----ccHHHHHHHHHHHcCCHH---------
Confidence 011133456666654433322 34444433221111 123467888999999986
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|++|| +++.
T Consensus 122 --------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 122 --------FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred --------HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhc
Confidence 45888999999999999999999 999999984 789999999 5676
Q ss_pred ccccEEE
Q 019066 283 SLTDRAR 289 (346)
Q Consensus 283 ~~aDri~ 289 (346)
.+.+|++
T Consensus 194 ~~~~~~~ 200 (204)
T PRK13538 194 SDKVRKL 200 (204)
T ss_pred cCCceEE
Confidence 7677884
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=258.44 Aligned_cols=185 Identities=15% Similarity=0.132 Sum_probs=133.4
Q ss_pred cEEEeeeEEEeCC----CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc--e
Q 019066 70 LTDAKNKILSYTP----GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS--S 143 (346)
Q Consensus 70 ~l~~~~l~~~y~~----~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g--~ 143 (346)
||+++||+++|+. +....+ |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~~~g~ 72 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPV---LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-----PDSGRILVRHEGA 72 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEE---EecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEEecCCC
Confidence 4899999999963 111225 666999999999999999999999999999999999 9999999984 2
Q ss_pred --eCCCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 144 --VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 144 --~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
++............++.++|++|+...+..+ +.+++. +..... ........+++.++++.+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~-----------~~~~~~-~~~~~~~~~~~~~~l~~~~l~~ 140 (224)
T TIGR02324 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVA-----------EPLLER-GVPREAARARARELLARLNIPE 140 (224)
T ss_pred ccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCCch
Confidence 3320000000011233567777776544433 444433 221111 1122344567888999999975
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
. ..++++.+||||||||++||||| ||||++||. |.|+|+
T Consensus 141 ~----------------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~ 204 (224)
T TIGR02324 141 R----------------LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIG 204 (224)
T ss_pred h----------------hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 2 24678999999999999999999 999999984 789999
Q ss_pred Eec--hhhhccccEEEE
Q 019066 276 VTH--GDLLSLTDRARI 290 (346)
Q Consensus 276 iTH--~~~~~~aDri~v 290 (346)
+|| +.+..+||+++.
T Consensus 205 vsH~~~~~~~~~d~i~~ 221 (224)
T TIGR02324 205 IFHDEEVRELVADRVMD 221 (224)
T ss_pred EeCCHHHHHHhcceeEe
Confidence 999 456789999953
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=292.28 Aligned_cols=201 Identities=18% Similarity=0.193 Sum_probs=157.0
Q ss_pred CcEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
++|+++|++++|+++. ...+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~i---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-----~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEV---LKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-----PTSGTYRVAGQDVAT 74 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeee---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEcCc
Confidence 4799999999996421 1124 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
....+.....++.++|++|+...+.++ +.+|+.+.. ... .....+.++++.++++.+++.+
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~-----------~~~-~~~~~~~~~~~~~~l~~lgl~~------ 136 (648)
T PRK10535 75 LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA-----------VYA-GLERKQRLLRAQELLQRLGLED------ 136 (648)
T ss_pred CCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHH-----------HHc-CCCHHHHHHHHHHHHHHCCChh------
Confidence 111111112245678888887666554 566654321 100 1123455678889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-hh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GD 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~ 280 (346)
..++.+.+||+||+||++||||| ||||++||. +.|+|++|| ..
T Consensus 137 -----------~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~ 205 (648)
T PRK10535 137 -----------RVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ 205 (648)
T ss_pred -----------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH
Confidence 46888999999999999999999 999999984 799999999 33
Q ss_pred hhccccEEEEEecCCeEeecCCccccc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
....|||+++ |++|++++.|++++..
T Consensus 206 ~~~~~d~i~~-l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 206 VAAQAERVIE-IRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhCCEEEE-EECCEEEeecCccccc
Confidence 4456999964 9999999999999886
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=256.52 Aligned_cols=177 Identities=13% Similarity=0.130 Sum_probs=131.3
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
..|+++|++++|+.... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 5 ~~l~~~~l~~~~~~~~~-~~---l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-----~~~G~i~~~g~~~~~~ 75 (207)
T cd03369 5 GEIEVENLSVRYAPDLP-PV---LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-----AEEGKIEIDGIDISTI 75 (207)
T ss_pred CeEEEEEEEEEeCCCCc-cc---ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-----CCCCeEEECCEEhHHC
Confidence 46999999999975321 14 667999999999999999999999999999999999 9999999999987410
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|++..+. .++.+|+.+... .. .+++.++++ +
T Consensus 76 ----~~~~~~~~i~~v~q~~~~~~-----------~tv~~~l~~~~~----~~----~~~~~~~l~---~---------- 119 (207)
T cd03369 76 ----PLEDLRSSLTIIPQDPTLFS-----------GTIRSNLDPFDE----YS----DEEIYGALR---V---------- 119 (207)
T ss_pred ----CHHHHHhhEEEEecCCcccC-----------ccHHHHhcccCC----CC----HHHHHHHhh---c----------
Confidence 00011345677777654332 244455432110 01 122333333 1
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 120 -----------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~ 188 (207)
T cd03369 120 -----------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTII 188 (207)
T ss_pred -----------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 345789999999999999999 999999984 789999999 4555
Q ss_pred ccccEEEEEecCCeEeecCCc
Q 019066 283 SLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~ 303 (346)
. ||++++ |++|++++.|++
T Consensus 189 ~-~d~v~~-l~~g~i~~~g~~ 207 (207)
T cd03369 189 D-YDKILV-MDAGEVKEYDHP 207 (207)
T ss_pred h-CCEEEE-EECCEEEecCCC
Confidence 5 999965 999999988753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=288.90 Aligned_cols=200 Identities=16% Similarity=0.132 Sum_probs=147.6
Q ss_pred CCcEEEeeeEEEeCC--CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC-CCceEEECcee
Q 019066 68 GSLTDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSV 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~--~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p-~~G~I~~~g~~ 144 (346)
.++|+++|+++.|++ +.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ | ++|+|.++|++
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~--~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~~G~i~~~g~~ 324 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRK--R---VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-----GKFEGNVFINGKP 324 (500)
T ss_pred CceEEEeCCccccccccccc--c---cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-----CCCCeEEEECCEE
Confidence 347999999999942 222 4 677999999999999999999999999999999998 7 79999999998
Q ss_pred CCCcccccccccCCCCccceeeccc---ccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 145 GDGTYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 145 i~~~~~~~~~~~~r~~i~~~~~d~~---~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
+.... .....++.++|++|+.. .+..+ +.+|+.+... ... ...........++++.++++.+++..
T Consensus 325 ~~~~~---~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~ 394 (500)
T TIGR02633 325 VDIRN---PAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVL---KSF----CFKMRIDAAAELQIIGSAIQRLKVKT 394 (500)
T ss_pred CCCCC---HHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhh---hhh----ccCCcCCHHHHHHHHHHHHHhcCccC
Confidence 74110 11112345778888752 33332 4444432110 000 00001112334567889999999964
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
. ..++++.+||||||||++||||| ||||++||. |.|||+
T Consensus 395 ~----------------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 458 (500)
T TIGR02633 395 A----------------SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIV 458 (500)
T ss_pred C----------------CccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 2 24888999999999999999999 999999984 889999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCcc
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~ 304 (346)
+|| +.+.++|||+++ |++|+++...+.+
T Consensus 459 vsHd~~~~~~~~d~v~~-l~~G~i~~~~~~~ 488 (500)
T TIGR02633 459 VSSELAEVLGLSDRVLV-IGEGKLKGDFVNH 488 (500)
T ss_pred ECCCHHHHHHhCCEEEE-EECCEEEEEEccc
Confidence 999 578899999975 9999999876543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=254.49 Aligned_cols=170 Identities=15% Similarity=0.099 Sum_probs=131.4
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||++.|++.. + |+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~~~---~---l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~--- 66 (201)
T cd03231 1 LEADELTCERDGRA---L---FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-----PLAGRVLLNGGPLDF--- 66 (201)
T ss_pred CEEEEEEEEeCCce---e---eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEeccc---
Confidence 57999999997643 3 677999999999999999999999999999999999 999999999988641
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|++|+...+... ++.+|+.+... ...++++.++++.+++.+
T Consensus 67 --~~~~~~~~i~~~~q~~~~~~~~----------tv~e~l~~~~~-------~~~~~~~~~~l~~~~l~~---------- 117 (201)
T cd03231 67 --QRDSIARGLLYLGHAPGIKTTL----------SVLENLRFWHA-------DHSDEQVEEALARVGLNG---------- 117 (201)
T ss_pred --ccHHhhhheEEeccccccCCCc----------CHHHHHHhhcc-------cccHHHHHHHHHHcCChh----------
Confidence 0111233556666654333222 44445443211 012456788999999986
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| .....
T Consensus 118 -------~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 118 -------FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred -------hhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 45788999999999999999999 999999984 789999999 45777
Q ss_pred cccEEEE
Q 019066 284 LTDRARI 290 (346)
Q Consensus 284 ~aDri~v 290 (346)
.|+++++
T Consensus 191 ~~~~~~~ 197 (201)
T cd03231 191 AGARELD 197 (201)
T ss_pred ccceeEe
Confidence 8999953
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=288.05 Aligned_cols=196 Identities=12% Similarity=0.094 Sum_probs=146.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++. + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 255 ~~~l~~~~l~~~--------~---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-----p~~G~I~~~g~~i~~ 318 (501)
T PRK10762 255 EVRLKVDNLSGP--------G---VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-----RTSGYVTLDGHEVVT 318 (501)
T ss_pred CcEEEEeCcccC--------C---cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCC
Confidence 357999999851 2 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeeccc---ccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC-ccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSV 222 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~---~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~ 222 (346)
.. .....++.++|++|+.. .+..+ +.+|+.+....... ...........++++.++++.+++. +
T Consensus 319 ~~---~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~l~~~-- 387 (501)
T PRK10762 319 RS---PQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFS------RAGGSLKHADEQQAVSDFIRLFNIKTP-- 387 (501)
T ss_pred CC---HHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhc------ccccccCHHHHHHHHHHHHHhcCCCCC--
Confidence 10 01112345788888752 23322 44444321100000 0000011233456788999999995 4
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEe
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiT 277 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|
T Consensus 388 ---------------~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivt 452 (501)
T PRK10762 388 ---------------SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVS 452 (501)
T ss_pred ---------------CccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEc
Confidence 35889999999999999999999 999999984 78999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
| +.+..+||++++ |++|+++..|+++++
T Consensus 453 Hd~~~~~~~~d~v~~-l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 453 SEMPEVLGMSDRILV-MHEGRISGEFTREQA 482 (501)
T ss_pred CCHHHHHhhCCEEEE-EECCEEEEEeccccC
Confidence 9 578899999965 999999999887654
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=280.23 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=145.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++||++.|+++....+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 19 ~~mL~lknL~~~~~~~~~~~I---L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-----P~sGeI~I~G~~~~- 89 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYA---LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-----PNKGTVDIKGSAAL- 89 (549)
T ss_pred cceeEEEEEEEecCCCccceE---EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-----CCceEEEECCEeee-
Confidence 458999999999977532225 677999999999999999999999999999999999 99999999997521
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
..+.......+ ++.+|+.+..... ........+++.++++.+++.+
T Consensus 90 ----------------i~~~~~l~~~l----------TV~EnL~l~~~~~-~~~~~e~~e~i~elLe~lgL~~------- 135 (549)
T PRK13545 90 ----------------IAISSGLNGQL----------TGIENIELKGLMM-GLTKEKIKEIIPEIIEFADIGK------- 135 (549)
T ss_pred ----------------EEeccccCCCC----------cHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHcCChh-------
Confidence 00111111111 3334433321111 1123444566788999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. |.|+|++|| +.
T Consensus 136 ----------~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 136 ----------FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred ----------HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 45888999999999999999999 999999984 789999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+..+||++++ |++|++++.|++++++..
T Consensus 206 i~~l~DrIiv-L~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 206 VKSFCTKALW-LHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhh
Confidence 8889999965 999999999999887654
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=265.16 Aligned_cols=202 Identities=18% Similarity=0.109 Sum_probs=150.5
Q ss_pred HHHHHHhhhhhhhhcc-----CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 51 AVFREVLQSYDQLRTR-----IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 51 ~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+-+.+.++.+.++... ..+.|+++|+++. . .. + |+++||+|++||+++|+||||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~nls~~--~-~~--v---L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENNDRKHSSDDNNLFFSNLCLV--G-AP--V---LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccccccccCCCCCeEEEEEEEEe--c-cc--c---eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456677666554322 2346999999985 2 22 3 7779999999999999999999999999999999
Q ss_pred ccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHH
Q 019066 126 FENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 205 (346)
Q Consensus 126 ~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~ 205 (346)
++ |++|+|.++|. ++|++|+...+.. ++.+|+.++... .
T Consensus 87 ~~-----p~~G~I~i~g~-----------------i~yv~q~~~l~~~-----------tv~enl~~~~~~------~-- 125 (282)
T cd03291 87 LE-----PSEGKIKHSGR-----------------ISFSSQFSWIMPG-----------TIKENIIFGVSY------D-- 125 (282)
T ss_pred CC-----CCCcEEEECCE-----------------EEEEeCccccccc-----------CHHHHhhccccc------C--
Confidence 99 99999999872 2567766543322 344555433210 0
Q ss_pred HHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------
Q 019066 206 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------- 269 (346)
Q Consensus 206 ~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------- 269 (346)
..++.++++.+++.+.+..++.++++.+++. +.+||||||||++||||| ||||++||.
T Consensus 126 ~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~------~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~ 199 (282)
T cd03291 126 EYRYKSVVKACQLEEDITKFPEKDNTVLGEG------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF 199 (282)
T ss_pred HHHHHHHHHHhCCHHHHHhccccccceecCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 1223455666677665656666666665443 679999999999999999 999999884
Q ss_pred ---------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ---------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ---------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.|||++|| +.+ ..||++++ |++|++++.|+++++...
T Consensus 200 ~~ll~~~~~~~tIiiisH~~~~~-~~~d~i~~-l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 200 ESCVCKLMANKTRILVTSKMEHL-KKADKILI-LHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHHhhCCCEEEEEeCChHHH-HhCCEEEE-EECCEEEEECCHHHHHhc
Confidence 789999999 344 57999965 999999999999888654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=315.78 Aligned_cols=197 Identities=14% Similarity=0.113 Sum_probs=159.8
Q ss_pred CCcEEEeeeEEEeCC-CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~-~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.+.|+++||++.|++ +.. + |+|+||+|.+||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 926 ~~~L~I~nLsK~y~~~~k~--a---L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-----PtsG~I~i~G~dI~ 995 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRP--A---VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-----PTSGTVLVGGKDIE 995 (2272)
T ss_pred CceEEEEeEEEEecCCCce--E---EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-----CCceEEEECCEECc
Confidence 457999999999963 332 5 666999999999999999999999999999999999 99999999999985
Q ss_pred CcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
. .....++.+++++|+...+..+ |.+++.++.. .. ..+..+.++++.++++.++|.+
T Consensus 996 ~-----~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~-----------lk-g~~~~~~~~~v~~lL~~vgL~~----- 1053 (2272)
T TIGR01257 996 T-----NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQ-----------LK-GRSWEEAQLEMEAMLEDTGLHH----- 1053 (2272)
T ss_pred c-----hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHH-----------hc-CCCHHHHHHHHHHHHHHcCCch-----
Confidence 1 1111245678888887666554 6666554321 11 1123445678899999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--h
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--G 279 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~ 279 (346)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 1054 ------------~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmd 1121 (2272)
T TIGR01257 1054 ------------KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD 1121 (2272)
T ss_pred ------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 56899999999999999999999 999999984 899999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+..+||||++ |++|+++..|+++.+...
T Consensus 1122 ea~~laDrI~i-L~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1122 EADLLGDRIAI-ISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHhCCEEEE-EECCEEEEecCHHHHHHh
Confidence 78889999975 999999999998877543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=252.37 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=129.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|+++.|++.. + |+++||+|.+||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 68 (198)
T TIGR01189 1 LAARNLACSRGERM---L---FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTALAEQR- 68 (198)
T ss_pred CEEEEEEEEECCEE---E---EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEcccch-
Confidence 57899999997632 4 777999999999999999999999999999999999 99999999999875210
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
...++.++|++|+...+..+ ++.+|+.+...... .. ++++.++++.+++.+
T Consensus 69 ----~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~~~~----~~-~~~~~~~l~~~~l~~---------- 119 (198)
T TIGR01189 69 ----DEPHRNILYLGHLPGLKPEL----------SALENLHFWAAIHG----GA-QRTIEDALAAVGLTG---------- 119 (198)
T ss_pred ----HHhhhheEEeccCcccccCC----------cHHHHHHHHHHHcC----Cc-HHHHHHHHHHcCCHH----------
Confidence 11133556666654433322 33344433211111 11 346788999999987
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEechhhhccc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHGDLLSLT 285 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH~~~~~~a 285 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++||+...-.|
T Consensus 120 -------~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 192 (198)
T TIGR01189 120 -------FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE 192 (198)
T ss_pred -------HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc
Confidence 45888999999999999999999 999999984 7899999996554457
Q ss_pred cEE
Q 019066 286 DRA 288 (346)
Q Consensus 286 Dri 288 (346)
+++
T Consensus 193 ~~~ 195 (198)
T TIGR01189 193 ARE 195 (198)
T ss_pred eEE
Confidence 777
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=253.89 Aligned_cols=167 Identities=13% Similarity=0.162 Sum_probs=127.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||++.|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~-- 68 (207)
T PRK13539 2 MLEGEDLACVRGGRV---L---FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDIDD-- 68 (207)
T ss_pred EEEEEeEEEEECCeE---E---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEeCcc--
Confidence 589999999997532 4 677999999999999999999999999999999999 999999999987631
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. . .++.++|++++...+..+ +.+|+.+.. .... . ..+++.++++.+++.+
T Consensus 69 -~---~-~~~~~~~~~~~~~~~~~~tv~~~l~~~~-----------~~~~---~--~~~~~~~~l~~~~l~~-------- 119 (207)
T PRK13539 69 -P---D-VAEACHYLGHRNAMKPALTVAENLEFWA-----------AFLG---G--EELDIAAALEAVGLAP-------- 119 (207)
T ss_pred -h---h-hHhhcEEecCCCcCCCCCcHHHHHHHHH-----------HhcC---C--cHHHHHHHHHHcCCHH--------
Confidence 1 1 233456766554433322 455443321 1100 1 1245788999999976
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. |.|+|++|| +.+
T Consensus 120 ---------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 190 (207)
T PRK13539 120 ---------LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGL 190 (207)
T ss_pred ---------HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence 45788999999999999999999 999999984 899999999 345
Q ss_pred hccccEEE
Q 019066 282 LSLTDRAR 289 (346)
Q Consensus 282 ~~~aDri~ 289 (346)
.. |+++
T Consensus 191 ~~--~~~~ 196 (207)
T PRK13539 191 PG--AREL 196 (207)
T ss_pred cc--CcEE
Confidence 44 8884
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=255.38 Aligned_cols=188 Identities=16% Similarity=0.178 Sum_probs=134.4
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
.+.|+.+.|+.... + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++......
T Consensus 2 ~~~~~~~~~~~~~~--i---l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~~~~~ 71 (218)
T cd03290 2 QVTNGYFSWGSGLA--T---LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-----TLEGKVHWSNKNESEPSFE 71 (218)
T ss_pred eeeeeEEecCCCCc--c---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCeEEECCccccccccc
Confidence 57899999975543 4 777999999999999999999999999999999999 9999999999876411100
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
......++.++|++|++..+ ..++.+|+.+... .. .+++.++++.+++.+.+...|.|+++
T Consensus 72 ~~~~~~~~~i~~~~q~~~~~-----------~~t~~~nl~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~ 132 (218)
T cd03290 72 ATRSRNRYSVAYAAQKPWLL-----------NATVEENITFGSP----FN----KQRYKAVTDACSLQPDIDLLPFGDQT 132 (218)
T ss_pred ccchhhcceEEEEcCCCccc-----------cccHHHHHhhcCc----CC----HHHHHHHHHHhCcHHHHHhCcCcccc
Confidence 00011133456666654332 2345566554321 01 12334566777776554444555554
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC------------------CceEEEEec--hhhh
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tviiiTH--~~~~ 282 (346)
.+ ++++.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 133 ~~------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~- 205 (218)
T cd03290 133 EI------GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYL- 205 (218)
T ss_pred Cc------ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHH-
Confidence 44 345789999999999999999 999999874 689999999 455
Q ss_pred ccccEEEEEecCCe
Q 019066 283 SLTDRARIRTYLGE 296 (346)
Q Consensus 283 ~~aDri~v~l~~G~ 296 (346)
..||++++ |++|.
T Consensus 206 ~~~d~i~~-l~~G~ 218 (218)
T cd03290 206 PHADWIIA-MKDGS 218 (218)
T ss_pred hhCCEEEE-ecCCC
Confidence 46999964 88873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=284.24 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=145.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|. . + |++|||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++..
T Consensus 248 ~~~i~~~~l~~~~~--~---~---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i~~ 314 (491)
T PRK10982 248 EVILEVRNLTSLRQ--P---S---IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-----KSAGTITLHGKKINN 314 (491)
T ss_pred CcEEEEeCcccccC--c---c---cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-----CCccEEEECCEECCC
Confidence 45899999999752 2 3 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. .....++.++|++|+.... + ++++......++.+++...............++++.++++.+++...
T Consensus 315 ~~---~~~~~~~~i~~~~q~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------ 383 (491)
T PRK10982 315 HN---ANEAINHGFALVTEERRST-G-IYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP------ 383 (491)
T ss_pred CC---HHHHHHCCCEEcCCchhhC-C-cccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC------
Confidence 11 1111234567888774311 0 11222111112223332111100101123445678889999999531
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
..++++.+||||||||++||||| ||||++||. |.|||++|| +.
T Consensus 384 ----------~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~ 453 (491)
T PRK10982 384 ----------GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE 453 (491)
T ss_pred ----------CcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 25889999999999999999999 999999984 899999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
+..+|||++ +|++|+++..++.
T Consensus 454 ~~~~~d~v~-~l~~g~i~~~~~~ 475 (491)
T PRK10982 454 LLGITDRIL-VMSNGLVAGIVDT 475 (491)
T ss_pred HHhhCCEEE-EEECCEEEEEEcc
Confidence 889999996 4999999976654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=313.56 Aligned_cols=197 Identities=10% Similarity=0.070 Sum_probs=160.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+|.|+++.. .+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~-~a---L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-----ptsG~I~i~G~~i~~ 2005 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSS-PA---VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-----VTSGDATVAGKSILT 2005 (2272)
T ss_pred CceEEEEEEEEEECCCCc-eE---EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECcc
Confidence 457999999999975321 25 666999999999999999999999999999999999 999999999999741
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.....++.++|++|+...+..+ +.|++.++.. .. ..+.+..++++.++++.++|.+
T Consensus 2006 -----~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~-----------l~-g~~~~~~~~~v~~lLe~lgL~~------ 2062 (2272)
T TIGR01257 2006 -----NISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR-----------LR-GVPAEEIEKVANWSIQSLGLSL------ 2062 (2272)
T ss_pred -----hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHH-----------hc-CCCHHHHHHHHHHHHHHcCCHH------
Confidence 1111245678888887666554 6666554321 11 1223445667889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||+|| ||||+|||+ |+|||++|| +
T Consensus 2063 -----------~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me 2131 (2272)
T TIGR01257 2063 -----------YADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131 (2272)
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56899999999999999999999 999999984 899999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCcccccc
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
++..+|||+++ |++|+++..|+++++..
T Consensus 2132 e~e~lcDrV~I-L~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2132 ECEALCTRLAI-MVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHHHH
Confidence 78999999975 99999999999988744
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=284.96 Aligned_cols=195 Identities=12% Similarity=0.109 Sum_probs=147.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ml~i~~ls~~~~~~~---i---l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~----- 64 (530)
T PRK15064 1 MLSTANITMQFGAKP---L---FENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-----PSAGNVSLDPNE----- 64 (530)
T ss_pred CEEEEEEEEEeCCcE---e---EeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCC-----
Confidence 589999999997532 4 677999999999999999999999999999999999 999999998631
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHH------hhhhcchh---------------hccCCChHHHHH
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIM------EGVRHGEL---------------VIRRSDSSSLRN 207 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~------~~i~~~~~---------------~~~~~~~~~~~~ 207 (346)
.++|++|+...+..+ +.+++.+...... +.+. ... ..........++
T Consensus 65 ----------~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (530)
T PRK15064 65 ----------RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIY-ALPEMSEEDGMKVADLEVKFAEMDGYTAEA 133 (530)
T ss_pred ----------EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHh-cccccccchHHHHHHHHHHHHhcCchhHHH
Confidence 246888877665554 6777654221000 0000 000 000000112346
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------- 269 (346)
++.++++.+|+.+. ..++++.+||||||||++||||| ||||++||.
T Consensus 134 ~~~~~l~~~gl~~~----------------~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 197 (530)
T PRK15064 134 RAGELLLGVGIPEE----------------QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV 197 (530)
T ss_pred HHHHHHHhCCCChh----------------HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH
Confidence 78899999999752 13567899999999999999999 999999984
Q ss_pred ----CceEEEEec--hhhhccccEEEEEecCCeE-eecCCcccccc
Q 019066 270 ----DKPVVVVTH--GDLLSLTDRARIRTYLGEL-LGIPPAKQIFD 308 (346)
Q Consensus 270 ----g~tviiiTH--~~~~~~aDri~v~l~~G~i-v~~g~~~~l~~ 308 (346)
+.|||+||| +.+..+||+++ +|++|++ +..|++++++.
T Consensus 198 l~~~~~tiiivsHd~~~~~~~~d~i~-~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 198 LNERNSTMIIISHDRHFLNSVCTHMA-DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HHhCCCeEEEEeCCHHHHHhhcceEE-EEeCCEEEEecCCHHHHHH
Confidence 889999999 56889999996 5999999 47898887764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=247.83 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=116.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... .+ |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...
T Consensus 1 i~~~~~~~~~~~~~~-~~---l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 69 (178)
T cd03247 1 LSINNVSFSYPEQEQ-QV---LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-----PQQGEITLDGVPVSDL-- 69 (178)
T ss_pred CEEEEEEEEeCCCCc-cc---eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-----CCCCEEEECCEEHHHH--
Confidence 578999999976421 13 777999999999999999999999999999999999 9999999999876410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
. ...++.++|++|+ +.++..++.+|+
T Consensus 70 ~---~~~~~~i~~~~q~-----------~~~~~~tv~~~i---------------------------------------- 95 (178)
T cd03247 70 E---KALSSLISVLNQR-----------PYLFDTTLRNNL---------------------------------------- 95 (178)
T ss_pred H---HHHHhhEEEEccC-----------CeeecccHHHhh----------------------------------------
Confidence 0 0012234455444 322222332222
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
+.+|||||+||++||||| ||||++||. +.|+|++|| +.+. .
T Consensus 96 ------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~ 162 (178)
T cd03247 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-H 162 (178)
T ss_pred ------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-h
Confidence 338999999999999999 999999983 789999999 4554 6
Q ss_pred ccEEEEEecCCeEeecC
Q 019066 285 TDRARIRTYLGELLGIP 301 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g 301 (346)
||++++ |++|++++.|
T Consensus 163 ~d~~~~-l~~g~i~~~~ 178 (178)
T cd03247 163 MDKILF-LENGKIIMQG 178 (178)
T ss_pred CCEEEE-EECCEEEecC
Confidence 999965 9999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=250.49 Aligned_cols=169 Identities=12% Similarity=0.137 Sum_probs=129.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 1 ml~~~~l~~~~~~~~---i---l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~-- 67 (200)
T PRK13540 1 MLDVIELDFDYHDQP---L---LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-----PEKGEILFERQSIKK-- 67 (200)
T ss_pred CEEEEEEEEEeCCee---E---EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeeEEECCCcccc--
Confidence 489999999997633 4 777999999999999999999999999999999999 999999999988741
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++.++|++|+...+..+ +.+|+ .++... . . .+.++.++++.+++..
T Consensus 68 ---~~~~~~~~i~~~~q~~~~~~~~tv~~~~-----------~~~~~~--~--~--~~~~~~~~l~~~~l~~-------- 119 (200)
T PRK13540 68 ---DLCTYQKQLCFVGHRSGINPYLTLRENC-----------LYDIHF--S--P--GAVGITELCRLFSLEH-------- 119 (200)
T ss_pred ---CHHHHHhheEEeccccccCcCCCHHHHH-----------HHHHhc--C--c--chHHHHHHHHHcCCch--------
Confidence 0011134566777665443332 44443 332110 0 1 1246788999999976
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~ 282 (346)
..++++.+||+||+||++||||| ||||++||. +.|+|++|| ....
T Consensus 120 ---------~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 120 ---------LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL 190 (200)
T ss_pred ---------hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhc
Confidence 35778899999999999999999 999999984 789999999 4444
Q ss_pred ccccEE
Q 019066 283 SLTDRA 288 (346)
Q Consensus 283 ~~aDri 288 (346)
..||.-
T Consensus 191 ~~~d~~ 196 (200)
T PRK13540 191 NKADYE 196 (200)
T ss_pred cccchh
Confidence 558876
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=284.98 Aligned_cols=181 Identities=12% Similarity=0.126 Sum_probs=142.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 318 ~~l~~~~l~~~~~~~~---~---l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~~---- 382 (530)
T PRK15064 318 NALEVENLTKGFDNGP---L---FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-----PDSGTVKWSENA---- 382 (530)
T ss_pred ceEEEEeeEEeeCCce---e---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCce----
Confidence 4899999999997643 3 677999999999999999999999999999999999 999999998732
Q ss_pred ccccccccCCCCccceeeccc-ccc-cc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTR-SLS-DD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~-~~~-~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.++|++|+.. .+. .+ +.+++.++ . . ....++++.++++.+++...
T Consensus 383 -----------~i~~~~q~~~~~~~~~~t~~~~~~~~-----------~----~--~~~~~~~~~~~l~~~~l~~~---- 430 (530)
T PRK15064 383 -----------NIGYYAQDHAYDFENDLTLFDWMSQW-----------R----Q--EGDDEQAVRGTLGRLLFSQD---- 430 (530)
T ss_pred -----------EEEEEcccccccCCCCCcHHHHHHHh-----------c----c--CCccHHHHHHHHHHcCCChh----
Confidence 3467888753 121 12 33332210 0 0 01124567889999999531
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhh
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDL 281 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+
T Consensus 431 ------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~ 498 (530)
T PRK15064 431 ------------DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFV 498 (530)
T ss_pred ------------HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 35889999999999999999999 999999985 569999999 578
Q ss_pred hccccEEEEEecCCeEe-ecCCccccccC
Q 019066 282 LSLTDRARIRTYLGELL-GIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv-~~g~~~~l~~~ 309 (346)
..+|||+++ |++|+++ ..|+++++++.
T Consensus 499 ~~~~d~i~~-l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 499 SSLATRIIE-ITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHhCCEEEE-EECCeEEEcCCCHHHHHHH
Confidence 889999965 9999998 77888776543
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=268.77 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=138.2
Q ss_pred EEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHH
Q 019066 107 LIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWI 186 (346)
Q Consensus 107 IvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v 186 (346)
|+||||||||||+++|+|+++ |++|+|.++|+++.. ....++.++|++|+...+..+ ++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-----p~~G~I~i~g~~i~~------~~~~~~~i~~v~q~~~l~~~~----------tv 59 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-----PDSGSIMLDGEDVTN------VPPHLRHINMVFQSYALFPHM----------TV 59 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-----CCceEEEECCEECCC------CCHHHCCEEEEecCccccCCC----------cH
Confidence 689999999999999999999 999999999998751 111234567777776555443 34
Q ss_pred HhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------
Q 019066 187 MEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------ 260 (346)
Q Consensus 187 ~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------ 260 (346)
.+|+.++.... .......++++.++++.+++.+ ..++++.+||||||||++|||||
T Consensus 60 ~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LSgGq~qRvalaraL~~~p~l 121 (325)
T TIGR01187 60 EENVAFGLKMR-KVPRAEIKPRVLEALRLVQLEE-----------------FADRKPHQLSGGQQQRVALARALVFKPKI 121 (325)
T ss_pred HHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCcc-----------------hhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 44444432211 1123445677889999999987 56889999999999999999999
Q ss_pred ---CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHH
Q 019066 261 ---NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENE 318 (346)
Q Consensus 261 ---DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~ 318 (346)
||||++||. |.|+|+||| +++..+|||+++ |++|++++.|++++++..|...++..+
T Consensus 122 llLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~v-l~~G~i~~~g~~~~~~~~~~~~~~~~~ 200 (325)
T TIGR01187 122 LLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAI-MRKGKIAQIGTPEEIYEEPANLFVARF 200 (325)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCcHHHHHh
Confidence 999999984 789999999 578889999975 999999999999999998887776666
Q ss_pred HHH
Q 019066 319 LII 321 (346)
Q Consensus 319 ~~~ 321 (346)
+..
T Consensus 201 ~~~ 203 (325)
T TIGR01187 201 IGE 203 (325)
T ss_pred cCc
Confidence 653
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=246.26 Aligned_cols=204 Identities=15% Similarity=0.192 Sum_probs=173.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc-eeCCC
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-SVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g-~~i~~ 147 (346)
.+|+++||+++|++- .| |+++||+|.+||.-+||||||+||||++-+|.|--+ |+.|+|+|+| .++.
T Consensus 4 ~iL~~~~vsVsF~GF---~A---ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-----p~~G~v~f~g~~dl~- 71 (249)
T COG4674 4 IILYLDGVSVSFGGF---KA---LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-----PQEGEVLFDGDTDLT- 71 (249)
T ss_pred ceEEEeceEEEEcce---ee---eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-----CCcceEEEcCchhhc-
Confidence 469999999999874 36 666999999999999999999999999999999999 9999999999 7776
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHH---HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKL---WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~---~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
...++.+.|..++..||.+.-|..+ |+||+.+... .++..+.. ....+.+.++.++|...||.+
T Consensus 72 --~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~-------r~~~~e~~ride~La~igL~~--- 139 (249)
T COG4674 72 --KLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFA-------RLRAEERRRIDELLATIGLGD--- 139 (249)
T ss_pred --cCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhh-------hcChhHHHHHHHHHHHcccch---
Confidence 3446677788999999999999888 9999887553 33332221 113455678999999999998
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC---------------CCceEEEEec-
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---------------DDKPVVVVTH- 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld---------------~g~tviiiTH- 278 (346)
..++....||.||||++.|++.+ |||++|+. .+.+|++|.|
T Consensus 140 --------------~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHD 205 (249)
T COG4674 140 --------------ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHD 205 (249)
T ss_pred --------------hhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 45888999999999999999998 99999964 3789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
.++..+|++|.| |+.|.+...|+.+++-.+|.
T Consensus 206 M~Fvr~~A~~VTV-lh~G~VL~EGsld~v~~dp~ 238 (249)
T COG4674 206 MGFVREIADKVTV-LHEGSVLAEGSLDEVQNDPK 238 (249)
T ss_pred HHHHHHhhheeEE-EeccceeecccHHHhhcCcc
Confidence 589999999986 99999999999999877764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=256.41 Aligned_cols=185 Identities=14% Similarity=0.072 Sum_probs=139.8
Q ss_pred cEEEeeeEEEeCCC-----------------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCC
Q 019066 70 LTDAKNKILSYTPG-----------------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 132 (346)
Q Consensus 70 ~l~~~~l~~~y~~~-----------------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~ 132 (346)
-|+++||++.|... ....+ |+++||+|++||+++|+||||||||||+++|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---l~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~----- 75 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFA---LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS----- 75 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEE---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-----
Confidence 48899999988531 11225 666999999999999999999999999999999999
Q ss_pred CCCceEEECceeCCCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHH
Q 019066 133 SERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 211 (346)
Q Consensus 133 p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 211 (346)
|++|+|.++|... +..+.......+ +.+|+. +..... ........+.+.+
T Consensus 76 p~~G~I~~~g~~~-----------------~~~~~~~~~~~~tv~enl~-----------~~~~~~-~~~~~~~~~~~~~ 126 (264)
T PRK13546 76 PTVGKVDRNGEVS-----------------VIAISAGLSGQLTGIENIE-----------FKMLCM-GFKRKEIKAMTPK 126 (264)
T ss_pred CCceEEEECCEEe-----------------EEecccCCCCCCcHHHHHH-----------HHHHHc-CCCHHHHHHHHHH
Confidence 9999999998521 112221111111 344433 211111 1123344556778
Q ss_pred HHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------
Q 019066 212 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------- 269 (346)
Q Consensus 212 ~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------- 269 (346)
+++.+++.+ ..++++.+|||||+||++||||| ||||++||.
T Consensus 127 ~l~~~~l~~-----------------~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~ 189 (264)
T PRK13546 127 IIEFSELGE-----------------FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF 189 (264)
T ss_pred HHHHcCCch-----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 888889877 45888999999999999999999 999999984
Q ss_pred ---CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ---g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|.|+|++|| +.+..+||++++ |++|++++.|+.++++..
T Consensus 190 ~~~g~tiIiisH~~~~i~~~~d~i~~-l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 190 KEQNKTIFFVSHNLGQVRQFCTKIAW-IEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHCCCEEEEEcCCHHHHHHHcCEEEE-EECCEEEEeCCHHHHHHH
Confidence 789999999 567889999964 999999999998887654
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=249.08 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=119.3
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh--ccCCCCCCCCceEEECceeCCCc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl--~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
|+++|++++|++. . + |+++||+|++||+++|+|+||||||||+++|+|+ ++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~-~--~---l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-----p~~G~i~~~g~~~~~~ 69 (200)
T cd03217 1 LEIKDLHVSVGGK-E--I---LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE-----VTEGEILFKGEDITDL 69 (200)
T ss_pred CeEEEEEEEeCCE-E--e---eeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC-----CCccEEEECCEECCcC
Confidence 5789999999753 2 4 7779999999999999999999999999999999 47 8999999999987511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. .....+..++|++|+...+.++ ++. +.+
T Consensus 70 ~---~~~~~~~~i~~v~q~~~~~~~~----------~~~-----------------------~~l--------------- 98 (200)
T cd03217 70 P---PEERARLGIFLAFQYPPEIPGV----------KNA-----------------------DFL--------------- 98 (200)
T ss_pred C---HHHHhhCcEEEeecChhhccCc----------cHH-----------------------HHH---------------
Confidence 0 0011122345555543222111 110 001
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
+..+.+|||||+||++||||| ||||++||. +.|+|++|| +.+
T Consensus 99 -----------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~ 167 (200)
T cd03217 99 -----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLL 167 (200)
T ss_pred -----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 112358999999999999999 999999983 789999999 556
Q ss_pred hc-cccEEEEEecCCeEeecCCc
Q 019066 282 LS-LTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 282 ~~-~aDri~v~l~~G~iv~~g~~ 303 (346)
.. +||++++ |++|++++.|+.
T Consensus 168 ~~~~~d~i~~-l~~G~i~~~~~~ 189 (200)
T cd03217 168 DYIKPDRVHV-LYDGRIVKSGDK 189 (200)
T ss_pred HHhhCCEEEE-EECCEEEEEccH
Confidence 66 7999975 999999999844
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=282.07 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=145.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+.++++|+++. . + ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 256 ~~l~~~~~~~~----~---~---l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~g~~~~~~ 320 (501)
T PRK11288 256 VRLRLDGLKGP----G---L---REPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-----RTAGQVYLDGKPIDIR 320 (501)
T ss_pred cEEEEeccccC----C---c---ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-----CCCceEEECCEECCCC
Confidence 46899999842 1 3 677999999999999999999999999999999999 9999999999987411
Q ss_pred ccccccccCCCCccceeeccc---ccccchhhchHhhHHHHHhhhhcchhhc----c-CCChHHHHHHHHHHHHHcCCCc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTR---SLSDDASDNINMIKLWIMEGVRHGELVI----R-RSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~---~~~~~v~qn~~~~~~~v~~~i~~~~~~~----~-~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
. .....++.++|++|++. .+..+ ++.+|+.++.... . .......++++.++++.+++..
T Consensus 321 ~---~~~~~~~~i~~~~q~~~~~~~~~~~----------tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 387 (501)
T PRK11288 321 S---PRDAIRAGIMLCPEDRKAEGIIPVH----------SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT 387 (501)
T ss_pred C---HHHHHhCCCEEcCcCHhhCCCcCCC----------CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc
Confidence 0 11112345677777653 23222 3334443321100 0 0012233467889999999942
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
. ..++++.+||||||||++||||| ||||++||. |.|||+
T Consensus 388 ~----------------~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii 451 (501)
T PRK11288 388 P----------------SREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLF 451 (501)
T ss_pred C----------------CccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEE
Confidence 1 35889999999999999999999 999999984 889999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
||| +.+..+||++++ |++|++++.|+++++
T Consensus 452 vsHd~~~~~~~~d~i~~-l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 452 VSSDLPEVLGVADRIVV-MREGRIAGELAREQA 483 (501)
T ss_pred ECCCHHHHHhhCCEEEE-EECCEEEEEEccccC
Confidence 999 578899999965 999999999987654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=281.31 Aligned_cols=194 Identities=11% Similarity=0.086 Sum_probs=145.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++ . + |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 266 ~~~l~~~~l~~-----~---~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-----p~~G~i~~~g~~i~~ 329 (510)
T PRK15439 266 APVLTVEDLTG-----E---G---FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-----ARGGRIMLNGKEINA 329 (510)
T ss_pred CceEEEeCCCC-----C---C---ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-----CCCcEEEECCEECCC
Confidence 45899999994 1 2 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeeccc---ccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC-ccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR---SLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSV 222 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~---~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~ 222 (346)
.. .....++.++|++|+.. .+..+ +.+|+..+.. ..... .......++++.++++.+++. .
T Consensus 330 ~~---~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~--------~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-- 395 (510)
T PRK15439 330 LS---TAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTH--------NRRGF-WIKPARENAVLERYRRALNIKFN-- 395 (510)
T ss_pred CC---HHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhh--------hhhcc-ccChHHHHHHHHHHHHHcCCCCC--
Confidence 10 11112345678877642 23222 3343321100 00000 001223346688999999997 4
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEe
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiT 277 (346)
..++++.+||||||||++||||| ||||++||. |.|||+||
T Consensus 396 ---------------~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivs 460 (510)
T PRK15439 396 ---------------HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFIS 460 (510)
T ss_pred ---------------CccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 35889999999999999999999 999999984 78999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCccccc
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
| +.+.++|||+++ |++|+++..|+++++.
T Consensus 461 Hd~~~i~~~~d~i~~-l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 461 SDLEEIEQMADRVLV-MHQGEISGALTGAAIN 491 (510)
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEEEccccCC
Confidence 9 578899999965 9999999998876554
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=282.61 Aligned_cols=197 Identities=12% Similarity=0.073 Sum_probs=147.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|+++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 4 ~~~l~i~~l~~~y~~~~~--i---l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-----p~~G~i~~~~~---- 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQ--I---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFEGEARPAPG---- 69 (556)
T ss_pred cEEEEEeeEEEEeCCCCe--e---eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC----
Confidence 458999999999973232 4 777999999999999999999999999999999999 99999998641
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHH------hhhhc--chh----------------hccCCCh
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIM------EGVRH--GEL----------------VIRRSDS 202 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~------~~i~~--~~~----------------~~~~~~~ 202 (346)
..++|++|++..+..+ +.+|+.+....+. ..+.. ... .......
T Consensus 70 -----------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (556)
T PRK11819 70 -----------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA 138 (556)
T ss_pred -----------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 1357889987766554 7777654321100 00000 000 0000000
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
.+.++++.++++.+|+.. .++++.+||||||||++||||| ||||++||.
T Consensus 139 ~~~~~~~~~~l~~~gl~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~ 200 (556)
T PRK11819 139 WDLDSQLEIAMDALRCPP------------------WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 200 (556)
T ss_pred cchHHHHHHHHHhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHH
Confidence 122457888999999954 3778999999999999999999 999999995
Q ss_pred ---------CceEEEEec--hhhhccccEEEEEecCCeEe-ecCCcccccc
Q 019066 270 ---------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 308 (346)
Q Consensus 270 ---------g~tviiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l~~ 308 (346)
+.|||+||| +.+..+||+|++ |++|+++ ..|+.+++..
T Consensus 201 ~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~-l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 201 WLEQFLHDYPGTVVAVTHDRYFLDNVAGWILE-LDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEE-EeCCEEEEecCCHHHHHH
Confidence 569999999 578889999964 9999987 7788776544
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=244.50 Aligned_cols=146 Identities=15% Similarity=0.192 Sum_probs=113.6
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 l~~~~l~~~~~~~~---~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 68 (173)
T cd03230 1 IEVRNLSKRYGKKT---A---LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-----PDSGEIKVLGKDIKKEP- 68 (173)
T ss_pred CEEEEEEEEECCee---e---eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEcccch-
Confidence 57899999997532 4 777999999999999999999999999999999999 99999999998875110
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
...++.++|++|+...+.++ ++.+|+
T Consensus 69 ----~~~~~~i~~~~q~~~~~~~~----------tv~~~~---------------------------------------- 94 (173)
T cd03230 69 ----EEVKRRIGYLPEEPSLYENL----------TVRENL---------------------------------------- 94 (173)
T ss_pred ----HhhhccEEEEecCCccccCC----------cHHHHh----------------------------------------
Confidence 11123455666653322110 221111
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
.|||||+||++||||| ||||++||. |.|+|++|| +.+..
T Consensus 95 --------------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 95 --------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred --------------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 0999999999999999 999999984 689999999 46777
Q ss_pred cccEEEEEecCCeE
Q 019066 284 LTDRARIRTYLGEL 297 (346)
Q Consensus 284 ~aDri~v~l~~G~i 297 (346)
+||++++ |++|++
T Consensus 161 ~~d~i~~-l~~g~i 173 (173)
T cd03230 161 LCDRVAI-LNNGRI 173 (173)
T ss_pred hCCEEEE-EeCCCC
Confidence 9999975 998864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=244.20 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=111.3
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... .+ ++++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 1 i~~~~l~~~~~~~~~-~~---l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~g~~~~~~~- 70 (173)
T cd03246 1 LEVENVSFRYPGAEP-PV---LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-----PTSGRVRLDGADISQWD- 70 (173)
T ss_pred CEEEEEEEEcCCCCC-cc---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-----CCCCeEEECCEEcccCC-
Confidence 578999999975321 14 777999999999999999999999999999999999 99999999998874100
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
. ...++.++|++|+ +.+++.++.+|+
T Consensus 71 --~-~~~~~~i~~~~q~-----------~~~~~~tv~~~l---------------------------------------- 96 (173)
T cd03246 71 --P-NELGDHVGYLPQD-----------DELFSGSIAENI---------------------------------------- 96 (173)
T ss_pred --H-HHHHhheEEECCC-----------CccccCcHHHHC----------------------------------------
Confidence 0 0012234444444 322221221111
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
|||||+||++||||| ||||++||. |+|+|++|| +.+ .
T Consensus 97 ---------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~ 160 (173)
T cd03246 97 ---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-A 160 (173)
T ss_pred ---------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-H
Confidence 999999999999999 999999984 789999999 445 5
Q ss_pred cccEEEEEecCCeE
Q 019066 284 LTDRARIRTYLGEL 297 (346)
Q Consensus 284 ~aDri~v~l~~G~i 297 (346)
.||++++ |++|++
T Consensus 161 ~~d~v~~-l~~G~i 173 (173)
T cd03246 161 SADRILV-LEDGRV 173 (173)
T ss_pred hCCEEEE-EECCCC
Confidence 7999965 999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=245.25 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=121.0
Q ss_pred cEEEeeeEEEeCCC-----CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc--cCCCCCCCCceEEECc
Q 019066 70 LTDAKNKILSYTPG-----AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASERAQVTYNS 142 (346)
Q Consensus 70 ~l~~~~l~~~y~~~-----~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~--~~~~~~p~~G~I~~~g 142 (346)
.|+++||+++|++. .. + |+++||+|++||+++|+||||||||||+++|+|++ + |++|+|.++|
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~--~---l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-----~~~G~i~~~g 72 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQ--L---LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-----GVSGEVLING 72 (194)
T ss_pred EEEEEeeEEEEecCCCccccc--c---eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECC
Confidence 48999999999752 22 4 67799999999999999999999999999999999 8 9999999999
Q ss_pred eeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccc
Q 019066 143 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 222 (346)
Q Consensus 143 ~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 222 (346)
+++.. . ..++.++|++|+...+..+ ++.+|+.++. .
T Consensus 73 ~~~~~------~-~~~~~i~~~~q~~~~~~~~----------t~~~~i~~~~-------------------------~-- 108 (194)
T cd03213 73 RPLDK------R-SFRKIIGYVPQDDILHPTL----------TVRETLMFAA-------------------------K-- 108 (194)
T ss_pred EeCch------H-hhhheEEEccCcccCCCCC----------cHHHHHHHHH-------------------------H--
Confidence 98751 1 1133456666654333221 3333332100 0
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEe
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiT 277 (346)
..+|||||+||++||||| ||||++||. ++|+|++|
T Consensus 109 --------------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 168 (194)
T cd03213 109 --------------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSI 168 (194)
T ss_pred --------------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 007999999999999999 999999984 78999999
Q ss_pred c--h-hhhccccEEEEEecCCeEeecC
Q 019066 278 H--G-DLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 278 H--~-~~~~~aDri~v~l~~G~iv~~g 301 (346)
| . .+..+||++++ |++|+++..|
T Consensus 169 h~~~~~~~~~~d~v~~-l~~G~i~~~~ 194 (194)
T cd03213 169 HQPSSEIFELFDKLLL-LSQGRVIYFG 194 (194)
T ss_pred cCchHHHHHhcCEEEE-EeCCEEEecC
Confidence 9 3 46788999975 9999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=310.02 Aligned_cols=208 Identities=13% Similarity=0.109 Sum_probs=162.4
Q ss_pred hhhHHHHHHhhhhhhhhc-----c----CCCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHH
Q 019066 48 RRDAVFREVLQSYDQLRT-----R----IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSS 117 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~-----~----~~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKST 117 (346)
.+..|+.++++.+++... . ....|+++|++|.|++. .. + |+|+||+|++|++++|+|||||||||
T Consensus 605 ~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~---l~~isl~i~~G~~v~IvG~~GsGKST 679 (1522)
T TIGR00957 605 VSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPP--T---LNGITFSIPEGALVAVVGQVGCGKSS 679 (1522)
T ss_pred HHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCc--e---eeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 345567777765433211 0 11269999999999753 23 3 77799999999999999999999999
Q ss_pred HHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc
Q 019066 118 LVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 197 (346)
Q Consensus 118 Ll~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~ 197 (346)
|+++|+|+++ |++|+|.++|. ++|++|++..+ ..++++||.++...
T Consensus 680 Ll~~l~g~~~-----~~~G~i~~~g~-----------------i~yv~Q~~~l~-----------~~Ti~eNI~~g~~~- 725 (1522)
T TIGR00957 680 LLSALLAEMD-----KVEGHVHMKGS-----------------VAYVPQQAWIQ-----------NDSLRENILFGKAL- 725 (1522)
T ss_pred HHHHHhCCCc-----cCCcEEEECCE-----------------EEEEcCCcccc-----------CCcHHHHhhcCCcc-
Confidence 9999999999 99999999862 25666665443 34566666654320
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC
Q 019066 198 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 268 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 268 (346)
.+++..++++.+++.+++..+|+|++|.||+++ .+||||||||++||||+ |||||+||
T Consensus 726 -------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g------~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD 792 (1522)
T TIGR00957 726 -------NEKYYQQVLEACALLPDLEILPSGDRTEIGEKG------VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792 (1522)
T ss_pred -------CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCC------CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 123455677788888888899999999999994 49999999999999999 99999988
Q ss_pred C------------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 269 D------------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 269 ~------------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
. ++|+|+||| ......||+|+ +|++|++++.|+++++..
T Consensus 793 ~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii-~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 793 AHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVII-VMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred HHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEE-EecCCeEEeeCCHHHHHh
Confidence 4 579999999 33334599996 599999999999988865
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=242.97 Aligned_cols=153 Identities=14% Similarity=0.200 Sum_probs=116.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++| + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 2 ~~~l~~~~l~~~~-----~-----l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~ 66 (182)
T cd03215 2 EPVLEVRGLSVKG-----A-----VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTR 66 (182)
T ss_pred CcEEEEeccEEEe-----e-----ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCc
Confidence 3579999999999 2 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhH-HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK-LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~-~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.. .....++.++|++|+... ..+++ .++.+|+.+. .
T Consensus 67 ~~---~~~~~~~~i~~~~q~~~~--------~~~~~~~t~~e~l~~~--------------------------~------ 103 (182)
T cd03215 67 RS---PRDAIRAGIAYVPEDRKR--------EGLVLDLSVAENIALS--------------------------S------ 103 (182)
T ss_pred cC---HHHHHhCCeEEecCCccc--------CcccCCCcHHHHHHHH--------------------------h------
Confidence 10 001123345666665310 01111 1333332210 0
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
.||+|||||++||||| ||||++||. +.|+|++|| +
T Consensus 104 ------------------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 104 ------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred ------------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 1999999999999999 999999984 789999999 5
Q ss_pred hhhccccEEEEEecCCeE
Q 019066 280 DLLSLTDRARIRTYLGEL 297 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~i 297 (346)
.+.++||++++ |++|++
T Consensus 166 ~~~~~~d~v~~-l~~G~i 182 (182)
T cd03215 166 ELLGLCDRILV-MYEGRI 182 (182)
T ss_pred HHHHhCCEEEE-ecCCcC
Confidence 78899999965 999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=247.13 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=124.1
Q ss_pred cEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+.++||+|.|+.+ ....+ |+++||+|++||+++|+||||||||||+++|+|++++.. |++|+|.++|.++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i---l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~--~~~G~i~i~g~~~~~~ 77 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPI---LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNV--SVEGDIHYNGIPYKEF 77 (202)
T ss_pred eEEEEccEEEeccCCCCcee---eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCC--CcceEEEECCEECccc
Confidence 47899999999753 11225 677999999999999999999999999999999987211 4799999999987511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++.++|++|+...+..+ ++.+|+.+... . .
T Consensus 78 -----~~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~---------~--------~-------------- 111 (202)
T cd03233 78 -----AEKYPGEIIYVSEEDVHFPTL----------TVRETLDFALR---------C--------K-------------- 111 (202)
T ss_pred -----hhhhcceEEEEecccccCCCC----------cHHHHHhhhhh---------h--------c--------------
Confidence 011233566777664443322 44444432110 0 0
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec---h
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---G 279 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH---~ 279 (346)
.++++..||+||+||++||||| ||||++||. +.|+|+++| +
T Consensus 112 ----------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~ 181 (202)
T cd03233 112 ----------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASD 181 (202)
T ss_pred ----------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHH
Confidence 1445779999999999999999 999999984 456666655 3
Q ss_pred hhhccccEEEEEecCCeEeecC
Q 019066 280 DLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g 301 (346)
.+.++||++++ |++|+++..|
T Consensus 182 ~~~~~~d~i~~-l~~G~i~~~g 202 (202)
T cd03233 182 EIYDLFDKVLV-LYEGRQIYYG 202 (202)
T ss_pred HHHHhCCeEEE-EECCEEEecC
Confidence 67889999965 9999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=277.44 Aligned_cols=196 Identities=13% Similarity=0.102 Sum_probs=139.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC-CCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p-~~G~I~~~g~~i~ 146 (346)
.++|+++|+++.|++.. + |+|+||+|++||+++|+||||||||||+|+|+|+.+ + ++|+|.++|+++.
T Consensus 258 ~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~-----~~~~G~i~~~g~~~~ 326 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRP---I---LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP-----QGYSNDLTLFGRRRG 326 (490)
T ss_pred CceEEEeceEEEECCee---E---EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----cccCCeEEEecccCC
Confidence 56899999999997533 3 777999999999999999999999999999999876 5 6999999998753
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh---ccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV---IRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
... .....++.++|++|+...+... ..++.+++.++... .........++++.++++.+++.+.
T Consensus 327 ~~~---~~~~~~~~i~~v~q~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-- 393 (490)
T PRK10938 327 SGE---TIWDIKKHIGYVSSSLHLDYRV--------STSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR-- 393 (490)
T ss_pred CCC---CHHHHHhhceEECHHHHhhccc--------CCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh--
Confidence 100 0001133566766654322110 00122222111100 0000112335678899999999752
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------C-ceEEEEe
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVT 277 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g-~tviiiT 277 (346)
..++++.+||||||||++||||| ||||++||. + .|||+||
T Consensus 394 --------------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivs 459 (490)
T PRK10938 394 --------------TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVS 459 (490)
T ss_pred --------------hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 24788999999999999999999 999999984 4 4699999
Q ss_pred c--hhhhc-cccEEEEEecCCeEeecCC
Q 019066 278 H--GDLLS-LTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 278 H--~~~~~-~aDri~v~l~~G~iv~~g~ 302 (346)
| +.+.. +||++++ |++|+|++.-.
T Consensus 460 Hd~~~~~~~~~d~v~~-l~~G~i~~~~~ 486 (490)
T PRK10938 460 HHAEDAPACITHRLEF-VPDGDIYRYVQ 486 (490)
T ss_pred cchhhhhhhhheeEEE-ecCCceEEeec
Confidence 9 46766 5999964 99999987654
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=243.54 Aligned_cols=150 Identities=21% Similarity=0.249 Sum_probs=112.6
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 i~~~~l~~~~~~~~---~---l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~~~-- 67 (178)
T cd03229 1 LELKNVSKRYGQKT---V---LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-----PDSGSILIDGEDLTDL-- 67 (178)
T ss_pred CEEEEEEEEECCeE---E---EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEEcccc--
Confidence 57899999997532 4 777999999999999999999999999999999999 9999999999887511
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.+.....++.++|++|+...+.+ .++.+|+.+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~----------~t~~~~l~~-------------------------------------- 99 (178)
T cd03229 68 EDELPPLRRRIGMVFQDFALFPH----------LTVLENIAL-------------------------------------- 99 (178)
T ss_pred chhHHHHhhcEEEEecCCccCCC----------CCHHHheee--------------------------------------
Confidence 00001112345555554322211 122222110
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
.|||||+||++||||| ||||++||. +.|+|++|| +.+.
T Consensus 100 --------------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 100 --------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred --------------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 1999999999999999 999999983 589999999 4677
Q ss_pred ccccEEEEEecCCe
Q 019066 283 SLTDRARIRTYLGE 296 (346)
Q Consensus 283 ~~aDri~v~l~~G~ 296 (346)
.+||++++ |++|+
T Consensus 166 ~~~d~i~~-l~~g~ 178 (178)
T cd03229 166 RLADRVVV-LRDGK 178 (178)
T ss_pred HhcCEEEE-EeCCC
Confidence 78999965 98874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=251.15 Aligned_cols=171 Identities=16% Similarity=0.230 Sum_probs=131.4
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchh
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 176 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~ 176 (346)
|+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++. . .++.++|++|+...+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~~~------~---~~~~i~~v~q~~~~~~~--- 63 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-----PAKGTVKVAGASPG------K---GWRHIGYVPQRHEFAWD--- 63 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCccch------H---hhCcEEEecccccccCC---
Confidence 5789999999999999999999999999999 99999999998753 1 13456788877543211
Q ss_pred hchHhhHHHHHhhhhcchhhc---cCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHH
Q 019066 177 DNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 253 (346)
Q Consensus 177 qn~~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQR 253 (346)
+..++.+|+.++.... ........++++.++++.+++.+ ..++++.+||||||||
T Consensus 64 -----~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G~~qr 121 (223)
T TIGR03771 64 -----FPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-----------------LADRPVGELSGGQRQR 121 (223)
T ss_pred -----CCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCch-----------------hhcCChhhCCHHHHHH
Confidence 0113334443321100 00112234567889999999987 4588899999999999
Q ss_pred HHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 254 QIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 254 v~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
++||||| ||||++||. +.|+|++|| +.+.++||++++ + +|+++..|+++++
T Consensus 122 v~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~-l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 122 VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVL-L-NGRVIADGTPQQL 199 (223)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE-E-CCEEEeecCHHHh
Confidence 9999999 999999984 789999999 568889999965 8 7999999998877
Q ss_pred cc
Q 019066 307 FD 308 (346)
Q Consensus 307 ~~ 308 (346)
..
T Consensus 200 ~~ 201 (223)
T TIGR03771 200 QD 201 (223)
T ss_pred cC
Confidence 55
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=243.21 Aligned_cols=160 Identities=15% Similarity=0.141 Sum_probs=120.1
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.|+++|+++.|++.. ...+ |+++||+|++||+++|+||||||||||+++|+|++... |++|+|.++|+++.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~-- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQL---LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLD-- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEe---EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehH--
Confidence 589999999997521 0124 67799999999999999999999999999999986211 78999999998863
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
...++.++|++|+...+..+ ++.+|+.++..
T Consensus 75 ------~~~~~~i~~~~q~~~~~~~~----------tv~~~l~~~~~--------------------------------- 105 (192)
T cd03232 75 ------KNFQRSTGYVEQQDVHSPNL----------TVREALRFSAL--------------------------------- 105 (192)
T ss_pred ------HHhhhceEEecccCccccCC----------cHHHHHHHHHH---------------------------------
Confidence 11123456666654333221 33334331100
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h-h
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G-D 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~-~ 280 (346)
.+ +|||||+||++||||| ||||++||. +.|+|++|| + .
T Consensus 106 ----------~~----~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~ 171 (192)
T cd03232 106 ----------LR----GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSAS 171 (192)
T ss_pred ----------Hh----cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHH
Confidence 00 7999999999999999 999999984 799999999 3 3
Q ss_pred hhccccEEEEEecC-CeEeecC
Q 019066 281 LLSLTDRARIRTYL-GELLGIP 301 (346)
Q Consensus 281 ~~~~aDri~v~l~~-G~iv~~g 301 (346)
+..+||++++ |++ |++++.|
T Consensus 172 ~~~~~d~i~~-l~~~g~i~~~g 192 (192)
T cd03232 172 IFEKFDRLLL-LKRGGKTVYFG 192 (192)
T ss_pred HHhhCCEEEE-EcCCCeEEeCC
Confidence 6788999965 998 9998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=237.39 Aligned_cols=135 Identities=15% Similarity=0.233 Sum_probs=108.7
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+++|++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~---v---l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~--- 66 (163)
T cd03216 1 LELRGITKRFGGVK---A---LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVSF--- 66 (163)
T ss_pred CEEEEEEEEECCeE---E---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCc---
Confidence 57999999997542 4 777999999999999999999999999999999999 999999999987640
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.... ... -..+++
T Consensus 67 ------------~~~~------------------------------------~~~-------~~~i~~------------ 79 (163)
T cd03216 67 ------------ASPR------------------------------------DAR-------RAGIAM------------ 79 (163)
T ss_pred ------------CCHH------------------------------------HHH-------hcCeEE------------
Confidence 0000 000 000110
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~ 283 (346)
..+|||||+||++||||| ||||++||. +.|+|++|| +.+..
T Consensus 80 ------------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 80 ------------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred ------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 112999999999999999 999999984 789999999 46788
Q ss_pred cccEEEEEecCCeEee
Q 019066 284 LTDRARIRTYLGELLG 299 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~ 299 (346)
+||++++ |++|++++
T Consensus 148 ~~d~~~~-l~~g~i~~ 162 (163)
T cd03216 148 IADRVTV-LRDGRVVG 162 (163)
T ss_pred hCCEEEE-EECCEEEe
Confidence 9999965 99999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-32 Score=243.81 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=115.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. ........++.++|++|++...
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-----~~~G~i~~~g~~~~~--~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-----PQSGAVLIDGEPLDY--SRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEECCEEccc--cccchHHHHhhEEEEecChhhc
Confidence 677999999999999999999999999999999999 999999999998741 0001111134567777765210
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
++..++.+|+.++.... ........+++.++++.+++.+ ..++++.+||||||
T Consensus 81 ---------~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-----------------~~~~~~~~LS~G~~ 133 (190)
T TIGR01166 81 ---------LFAADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASG-----------------LRERPTHCLSGGEK 133 (190)
T ss_pred ---------cccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchh-----------------hhhCChhhCCHHHH
Confidence 11123444444332111 1123344567889999999987 46888999999999
Q ss_pred HHHHHHHhc---------CccccCCCC----------------CceEEEEech
Q 019066 252 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHG 279 (346)
Q Consensus 252 QRv~IArAL---------DEPts~Ld~----------------g~tviiiTH~ 279 (346)
||++||||| ||||++||. |.|+|++||+
T Consensus 134 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 134 KRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 999999999 999999984 7899999994
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.9e-33 Score=288.73 Aligned_cols=180 Identities=14% Similarity=0.069 Sum_probs=138.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||++.|+++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 450 ~~i~~~nv~~~~~~~~~--i---l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-----~~~G~i~~~~------ 513 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDV--L---IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-----VYGGRLTKPA------ 513 (659)
T ss_pred CeEEEEeeEEECCCCCe--e---eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEeecC------
Confidence 46999999999965433 4 777999999999999999999999999999999999 9999998753
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
++.+++++|++..+.+ ++.+|+.++............++++.++++.+++.+.+.+ |.|
T Consensus 514 ---------~~~i~~v~Q~~~l~~~-----------tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g 572 (659)
T TIGR00954 514 ---------KGKLFYVPQRPYMTLG-----------TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGG 572 (659)
T ss_pred ---------CCcEEEECCCCCCCCc-----------CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCC
Confidence 2245677777655543 4444544432111000011124567889999999886654 899
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec-hhhhccc
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLT 285 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH-~~~~~~a 285 (346)
|+|+++. +.+||||||||++||||| ||||++||. |.|+|+||| ....+.|
T Consensus 573 ~~~~~~~-------~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 573 WSAVQDW-------MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYH 645 (659)
T ss_pred ccccccc-------ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhC
Confidence 9998653 458999999999999999 999999984 899999999 3455779
Q ss_pred cEEEEEec
Q 019066 286 DRARIRTY 293 (346)
Q Consensus 286 Dri~v~l~ 293 (346)
|++++ |+
T Consensus 646 d~il~-l~ 652 (659)
T TIGR00954 646 EYLLY-MD 652 (659)
T ss_pred CEEEE-Ee
Confidence 99965 74
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=284.08 Aligned_cols=194 Identities=12% Similarity=0.115 Sum_probs=145.3
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC--CceEEECceeCCCccc
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--RAQVTYNSSVGDGTYF 150 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~--~G~I~~~g~~i~~~~~ 150 (346)
++|++++|+++. + |+||||++++||++||+||||||||||+++|+|+++ |+ +|+|.++|+++.
T Consensus 71 ~~~l~~~~~~~~---i---L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~-----~~~~sG~I~inG~~~~---- 135 (659)
T PLN03211 71 ISDETRQIQERT---I---LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ-----GNNFTGTILANNRKPT---- 135 (659)
T ss_pred cccccccCCCCe---e---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC-----CCceeEEEEECCEECc----
Confidence 445566665432 4 777999999999999999999999999999999998 64 899999999864
Q ss_pred ccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. . .++.++|++|+...+..+ |.|++.+.... ........++.++++.++++.+||.+. .
T Consensus 136 --~-~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~---------~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~ 195 (659)
T PLN03211 136 --K-Q-ILKRTGFVTQDDILYPHLTVRETLVFCSLL---------RLPKSLTKQEKILVAESVISELGLTKC-------E 195 (659)
T ss_pred --h-h-hccceEEECcccccCCcCCHHHHHHHHHHh---------CCCCCCCHHHHHHHHHHHHHHcCChhh-------c
Confidence 1 1 123467887776655443 55555432110 000111234456778899999999762 2
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h-hh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G-DL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~-~~ 281 (346)
+|.|+ ++.+..||||||||++||||| ||||++||. |+|||++|| + .+
T Consensus 196 ~t~vg-----~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i 270 (659)
T PLN03211 196 NTIIG-----NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV 270 (659)
T ss_pred CceeC-----CCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH
Confidence 33343 345779999999999999999 999999984 899999999 3 47
Q ss_pred hccccEEEEEecCCeEeecCCccccc
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
.++||++++ |++|+++..|+++++.
T Consensus 271 ~~~~D~iil-L~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 271 YQMFDSVLV-LSEGRCLFFGKGSDAM 295 (659)
T ss_pred HHhhceEEE-ecCCcEEEECCHHHHH
Confidence 889999965 9999999999988774
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-32 Score=239.34 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=109.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++... .+ |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~~~-~~---l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-----~~~G~i~~~g~~~~~~-- 69 (171)
T cd03228 1 IEFKNVSFSYPGRPK-PV---LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDLRDL-- 69 (171)
T ss_pred CEEEEEEEEcCCCCc-cc---ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCCEEEECCEEhhhc--
Confidence 578999999976421 14 677999999999999999999999999999999999 9999999999886410
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
. . ...++.++|++|+ +.++..++.+|+
T Consensus 70 ~-~-~~~~~~i~~~~~~-----------~~~~~~t~~e~l---------------------------------------- 96 (171)
T cd03228 70 D-L-ESLRKNIAYVPQD-----------PFLFSGTIRENI---------------------------------------- 96 (171)
T ss_pred C-H-HHHHhhEEEEcCC-----------chhccchHHHHh----------------------------------------
Confidence 0 0 0012233444443 222221221111
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhcc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~ 284 (346)
||+||+||++||||| ||||++||. ++|+|++|| +.+..
T Consensus 97 ---------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 160 (171)
T cd03228 97 ---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD- 160 (171)
T ss_pred ---------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-
Confidence 999999999999999 999999984 789999999 45666
Q ss_pred ccEEEEEecCCe
Q 019066 285 TDRARIRTYLGE 296 (346)
Q Consensus 285 aDri~v~l~~G~ 296 (346)
||++++ |++|+
T Consensus 161 ~d~~~~-l~~g~ 171 (171)
T cd03228 161 ADRIIV-LDDGR 171 (171)
T ss_pred CCEEEE-EcCCC
Confidence 999965 98874
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-32 Score=241.74 Aligned_cols=166 Identities=10% Similarity=0.063 Sum_probs=124.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++|++++|++. . +.++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++..
T Consensus 1 ~l~~~~l~~~~~~~-~------l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~g~~i~~-- 66 (195)
T PRK13541 1 MLSLHQLQFNIEQK-N------LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-----PSSGNIYYKNCNINN-- 66 (195)
T ss_pred CeEEEEeeEEECCc-E------EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCcccCh--
Confidence 48899999999652 2 444999999999999999999999999999999999 999999999988741
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. .++.++|++++...+..+ ++.+|+.+..... ...+++.++++.+++.+
T Consensus 67 ----~--~~~~~~~~~~~~~~~~~~----------tv~~~l~~~~~~~------~~~~~~~~~l~~~~l~~--------- 115 (195)
T PRK13541 67 ----I--AKPYCTYIGHNLGLKLEM----------TVFENLKFWSEIY------NSAETLYAAIHYFKLHD--------- 115 (195)
T ss_pred ----h--hhhhEEeccCCcCCCccC----------CHHHHHHHHHHhc------ccHHHHHHHHHHcCCHh---------
Confidence 1 112345555544322222 3444443322110 12346778889999976
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~~ 283 (346)
..++.+.+|||||+||++||||+ ||||++||. +.|+|++|| .....
T Consensus 116 --------~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 116 --------LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIK 187 (195)
T ss_pred --------hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccc
Confidence 45788999999999999999999 999999884 799999999 33333
Q ss_pred cccEE
Q 019066 284 LTDRA 288 (346)
Q Consensus 284 ~aDri 288 (346)
.||-+
T Consensus 188 ~~~~~ 192 (195)
T PRK13541 188 SAQIL 192 (195)
T ss_pred hhhee
Confidence 47766
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=275.66 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=143.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+++|+++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++.
T Consensus 2 ~~~i~~~nls~~~~~~~~--i---l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~~---- 67 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPKKE--I---LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-----EFNGEARPAPG---- 67 (552)
T ss_pred cEEEEEeeEEEecCCCCe--e---ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCC----
Confidence 347999999999973233 4 677999999999999999999999999999999999 99999998641
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHH---hhhhcchhhccCCCh---------------------
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIM---EGVRHGELVIRRSDS--------------------- 202 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~---~~i~~~~~~~~~~~~--------------------- 202 (346)
..++|++|++..+..+ +.+|+.+...... ..+............
T Consensus 68 -----------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (552)
T TIGR03719 68 -----------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA 136 (552)
T ss_pred -----------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 1357888887665554 7777654221100 000000000000000
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---- 269 (346)
.....++.++++.+++.. .++++.+||||||||++||||| ||||++||.
T Consensus 137 ~~~~~~~~~~l~~~~l~~------------------~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~ 198 (552)
T TIGR03719 137 WDLDRKLEIAMDALRCPP------------------WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVA 198 (552)
T ss_pred chhHHHHHHHHhhCCCCc------------------ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHH
Confidence 011244566677777743 3678899999999999999999 999999985
Q ss_pred ---------CceEEEEec--hhhhccccEEEEEecCCeEe-ecCCcccccc
Q 019066 270 ---------DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQIFD 308 (346)
Q Consensus 270 ---------g~tviiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l~~ 308 (346)
+.|+|+||| +.+..+||++++ |++|+++ ..|+.++++.
T Consensus 199 ~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~-l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 199 WLEQHLQEYPGTVVAVTHDRYFLDNVAGWILE-LDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEE-EECCEEEEecCCHHHHHH
Confidence 679999999 578889999964 9999976 6788877654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=237.31 Aligned_cols=202 Identities=14% Similarity=0.182 Sum_probs=153.5
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||+.+-.+.+. + |++|||+|++||+.+|+||||||||||.++|+|.-. +.+++|+|.|+|+|+...
T Consensus 2 ~~L~I~dLhv~v~~~ke--I---LkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---Y~Vt~G~I~~~GedI~~l 73 (251)
T COG0396 2 MMLEIKDLHVEVEGKKE--I---LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---YEVTEGEILFDGEDILEL 73 (251)
T ss_pred ceeEEeeeEEEecCchh--h---hcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---ceEecceEEECCcccccC
Confidence 47999999999977522 3 777999999999999999999999999999999853 228999999999999722
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+.....|..+...||.+..+.|. +.+.+....+. ..+.. .. ..+..+++.++++.+++++.
T Consensus 74 ---~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~-----~~~~~---~~-~~~~~~~~~e~~~~l~~~~~------ 135 (251)
T COG0396 74 ---SPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNA-----RRGAR---GI-LPEFIKELKEKAELLGLDEE------ 135 (251)
T ss_pred ---CHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHh-----hhccc---cc-cHHHHHHHHHHHHHcCCCHH------
Confidence 22223355666778888777766 44333222211 10000 00 23567888999999999984
Q ss_pred eeeeeechhhhcccCCC-CCCHHHHHHHHHHHhc---------CccccCCC----------------CCceEEEEec-hh
Q 019066 228 FVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH-GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tviiiTH-~~ 280 (346)
+++|+.+ .+|||||+|..|+.++ |||-|||| +|.++++||| ..
T Consensus 136 ----------~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 136 ----------FLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred ----------HhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 4677776 5999999999999997 99999987 2899999999 55
Q ss_pred hhccc--cEEEEEecCCeEeecCCcccccc
Q 019066 281 LLSLT--DRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 281 ~~~~a--Dri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+..+. |++.| |.+|+|+.+|.+ ++..
T Consensus 206 ll~~i~pD~vhv-l~~GrIv~sG~~-el~~ 233 (251)
T COG0396 206 LLDYIKPDKVHV-LYDGRIVKSGDP-ELAE 233 (251)
T ss_pred HHhhcCCCEEEE-EECCEEEecCCH-HHHH
Confidence 55444 99975 999999999998 5543
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=242.00 Aligned_cols=192 Identities=14% Similarity=0.133 Sum_probs=147.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|+++.. |+|||++|++||.++|+||||||||||+++++|.+. |++|.+.+.|+..-.
T Consensus 29 ~~li~l~~v~v~r~gk~i------L~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-----pssg~~~~~G~~~G~ 97 (257)
T COG1119 29 EPLIELKNVSVRRNGKKI------LGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-----PSSGDVTLLGRRFGK 97 (257)
T ss_pred cceEEecceEEEECCEee------ccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-----CCCCceeeeeeeccC
Confidence 467999999999988654 777999999999999999999999999999999999 999999999987641
Q ss_pred cccccccccCCCCccceeecccccccchhhchH--hhHH-HHHhhhhcchhh----ccCCChHHHHHHHHHHHHHcCCCc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNIN--MIKL-WIMEGVRHGELV----IRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~--~~~~-~v~~~i~~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
.. .. ++.+..+|+|.-.+. +... ++++-|..+... .+....++..+++..+++.+|+.+
T Consensus 98 ~~-------------~~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~ 163 (257)
T COG1119 98 GE-------------TI-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH 163 (257)
T ss_pred Cc-------------ch-HHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh
Confidence 10 11 333444444322211 1111 344444433221 111224567788999999999998
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC------------------CceE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPV 273 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tv 273 (346)
+.+++..+||-|||||+.||||| |||+++||. +.++
T Consensus 164 -----------------la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~l 226 (257)
T COG1119 164 -----------------LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPAL 226 (257)
T ss_pred -----------------hccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceE
Confidence 67999999999999999999999 999999883 6789
Q ss_pred EEEec--hhhhccccEEEEEecCCeEeecCC
Q 019066 274 VVVTH--GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 274 iiiTH--~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
|+||| +++....++++. +++|+++.+|.
T Consensus 227 l~VtHh~eEi~~~~th~ll-l~~g~v~~~g~ 256 (257)
T COG1119 227 LFVTHHAEEIPPCFTHRLL-LKEGEVVAQGK 256 (257)
T ss_pred EEEEcchhhcccccceEEE-eeCCceeeccc
Confidence 99999 678777788864 99999999874
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=277.64 Aligned_cols=195 Identities=12% Similarity=0.094 Sum_probs=138.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|++.. + |+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|...
T Consensus 1 ~i~i~nls~~~g~~~---~---l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-----pd~G~I~~~~~~~---- 65 (638)
T PRK10636 1 MIVFSSLQIRRGVRV---L---LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-----ADGGSYTFPGNWQ---- 65 (638)
T ss_pred CEEEEEEEEEeCCce---e---ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEecCCCE----
Confidence 589999999997643 3 777999999999999999999999999999999999 9999999987431
Q ss_pred cccccccCCCCccceeecc----cccccchhhchHhhHH-HHHh------h--hhcchhh--ccCCChHHHHHHHHHHHH
Q 019066 150 FLQEYTIPRGSNSFSLYDT----RSLSDDASDNINMIKL-WIME------G--VRHGELV--IRRSDSSSLRNRMRCKAH 214 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~----~~~~~~v~qn~~~~~~-~v~~------~--i~~~~~~--~~~~~~~~~~~~~~~~l~ 214 (346)
++|+.|+. +...+++++....+.. +... + ..+.... .........+.++.++++
T Consensus 66 -----------i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 134 (638)
T PRK10636 66 -----------LAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLH 134 (638)
T ss_pred -----------EEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 12222221 1112223332222111 1000 0 0000000 000011234567889999
Q ss_pred HcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------Cce
Q 019066 215 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKP 272 (346)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~t 272 (346)
.+|+.+. .+++++.+||||||||++||||| ||||++||. +.|
T Consensus 135 ~lgl~~~----------------~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~t 198 (638)
T PRK10636 135 GLGFSNE----------------QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGT 198 (638)
T ss_pred hCCCCch----------------hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCe
Confidence 9999632 35888999999999999999999 999999984 779
Q ss_pred EEEEec--hhhhccccEEEEEecCCeEee-cCCccccc
Q 019066 273 VVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIF 307 (346)
Q Consensus 273 viiiTH--~~~~~~aDri~v~l~~G~iv~-~g~~~~l~ 307 (346)
||+||| .++..+||+++ +|++|+++. .|+.+...
T Consensus 199 viivsHd~~~l~~~~d~i~-~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 199 LILISHDRDFLDPIVDKII-HIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EEEEeCCHHHHHHhcCEEE-EEeCCEEEEecCCHHHHH
Confidence 999999 57889999996 499999974 56665444
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-32 Score=250.90 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=131.2
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE-----------ECc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 142 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~-----------~~g 142 (346)
.||+++|+++.. + |+|+|+ +++||+++|+||||||||||+++|+|+++ |++|+|+ ++|
T Consensus 4 ~~~~~~y~~~~~--~---l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~~~~~~~~~~~~g 72 (255)
T cd03236 4 DEPVHRYGPNSF--K---LHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK-----PNLGKFDDPPDWDEILDEFRG 72 (255)
T ss_pred cCcceeecCcch--h---hhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC-----CCCceEeeccccchhhhhccC
Confidence 478999976433 4 666995 99999999999999999999999999999 9999996 667
Q ss_pred eeCCCcccccccccCC--CCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 143 SVGDGTYFLQEYTIPR--GSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 143 ~~i~~~~~~~~~~~~r--~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
+++... . ....+ ..++++++....+ +.++.+++.+... ....++.+.++++.+++.+
T Consensus 73 ~~~~~~--~--~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~i~~~l~------~~~~~~~~~~~l~~~gl~~ 131 (255)
T cd03236 73 SELQNY--F--TKLLEGDVKVIVKPQYVDLI-----------PKAVKGKVGELLK------KKDERGKLDELVDQLELRH 131 (255)
T ss_pred chhhhh--h--HHhhhcccceeeecchhccC-----------chHHHHHHHHHhc------hhHHHHHHHHHHHHcCCch
Confidence 665310 0 00001 1123333332222 1122222222111 2234567889999999987
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
..++.+.+||+|||||++||||| ||||++||. ++|+|+
T Consensus 132 -----------------~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIi 194 (255)
T cd03236 132 -----------------VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV 194 (255)
T ss_pred -----------------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45788999999999999999999 999999984 789999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCccccccCCCC
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 312 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 312 (346)
+|| +.+..+||++++ | +|++.+.| ++..|.+
T Consensus 195 iSHd~~~~~~~ad~i~~-l-~~~~~~~~----~~~~~~~ 227 (255)
T cd03236 195 VEHDLAVLDYLSDYIHC-L-YGEPGAYG----VVTLPKS 227 (255)
T ss_pred EECCHHHHHHhCCEEEE-E-CCCCCcce----eeecCcc
Confidence 999 567789999964 7 57676554 4566665
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=288.77 Aligned_cols=209 Identities=16% Similarity=0.134 Sum_probs=171.5
Q ss_pred hhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 49 RDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
+..|+.+.+..++..++. ....++++|.+++++....... |+||||+|++|+.+||+|+.|||||||+.
T Consensus 489 S~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~t---L~dIn~~i~~G~lvaVvG~vGsGKSSLL~ 565 (1381)
T KOG0054|consen 489 SLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPT---LKDINFEIKKGQLVAVVGPVGSGKSSLLS 565 (1381)
T ss_pred HHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCccc---ccceeEEecCCCEEEEECCCCCCHHHHHH
Confidence 345677777555433222 2346999999999976332224 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|.|-.+ ..+|.|.++|. ++|++|. +.++..+|++||.||..
T Consensus 566 AiLGEm~-----~~sG~v~v~gs-----------------iaYv~Q~-----------pWI~ngTvreNILFG~~----- 607 (1381)
T KOG0054|consen 566 AILGEMP-----KLSGSVAVNGS-----------------VAYVPQQ-----------PWIQNGTVRENILFGSP----- 607 (1381)
T ss_pred HHhcCcc-----cccceEEEcCe-----------------EEEeccc-----------cHhhCCcHHHhhhcCcc-----
Confidence 9999999 99999999883 1455555 45556677777777643
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
-.+++-++.++.+.|.++++-+|+|=.|+|||+|. +||||||||+++|||+ |.|.|++|.
T Consensus 608 ---~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi------nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 608 ---YDEERYDKVIKACALKKDLEILPFGDLTEIGERGI------NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred ---ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc------CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhh
Confidence 33567778899999999999999999999999977 9999999999999999 999999884
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
++|+|+||| -.....||.|++ |++|+|++.|+.+|+.+
T Consensus 679 g~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iiv-l~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 679 GKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIV-LKDGKIVESGTYEELLK 731 (1381)
T ss_pred hHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEE-ecCCeEecccCHHHHHh
Confidence 899999999 456667999965 99999999999999984
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=231.60 Aligned_cols=140 Identities=16% Similarity=0.131 Sum_probs=111.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|+++.. + |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 i~~~~~~~~~~~~~~--~---l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-----~~~G~i~~~~~------- 63 (166)
T cd03223 1 IELENLSLATPDGRV--L---LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIGMPEG------- 63 (166)
T ss_pred CEEEEEEEEcCCCCe--e---eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCC-------
Confidence 578999999964333 4 777999999999999999999999999999999999 99999999763
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
+.++|++|+...+ ..++.+|+.++
T Consensus 64 --------~~i~~~~q~~~~~-----------~~tv~~nl~~~------------------------------------- 87 (166)
T cd03223 64 --------EDLLFLPQRPYLP-----------LGTLREQLIYP------------------------------------- 87 (166)
T ss_pred --------ceEEEECCCCccc-----------cccHHHHhhcc-------------------------------------
Confidence 1346777764322 12444444321
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec-hhhhccccE
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTDR 287 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH-~~~~~~aDr 287 (346)
++.+||||||||++||||| ||||++||. +.|+|++|| .....+||+
T Consensus 88 -----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~~~d~ 156 (166)
T cd03223 88 -----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWKFHDR 156 (166)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHhhCCE
Confidence 1348999999999999999 999999984 789999999 344568999
Q ss_pred EEEEecCC
Q 019066 288 ARIRTYLG 295 (346)
Q Consensus 288 i~v~l~~G 295 (346)
+++ |+++
T Consensus 157 i~~-l~~~ 163 (166)
T cd03223 157 VLD-LDGE 163 (166)
T ss_pred EEE-EcCC
Confidence 965 7664
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=275.65 Aligned_cols=181 Identities=13% Similarity=0.106 Sum_probs=138.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+++. +
T Consensus 310 ~~~l~~~~l~~~y~~~~---i---l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-~-- 375 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRI---I---LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-----PVSGEIGLAKG-I-- 375 (638)
T ss_pred CceEEEEeeEEEeCCee---e---eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCeEEECCC-E--
Confidence 45799999999997532 4 677999999999999999999999999999999999 99999998631 1
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.++|++|+.... + ..+ .++.+++.. ......++++.++|+.+++...
T Consensus 376 ------------~igy~~Q~~~~~--l-~~~-----~~~~~~~~~-------~~~~~~~~~~~~~L~~~~l~~~------ 422 (638)
T PRK10636 376 ------------KLGYFAQHQLEF--L-RAD-----ESPLQHLAR-------LAPQELEQKLRDYLGGFGFQGD------ 422 (638)
T ss_pred ------------EEEEecCcchhh--C-Ccc-----chHHHHHHH-------hCchhhHHHHHHHHHHcCCChh------
Confidence 235666653110 0 000 012222210 0012234678889999999642
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhhc
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~~ 283 (346)
..++++.+||||||||++|||+| ||||++||. +.|||+||| +++..
T Consensus 423 ----------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~ 492 (638)
T PRK10636 423 ----------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRS 492 (638)
T ss_pred ----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 24788999999999999999999 999999984 559999999 57888
Q ss_pred cccEEEEEecCCeEe-ecCCcccc
Q 019066 284 LTDRARIRTYLGELL-GIPPAKQI 306 (346)
Q Consensus 284 ~aDri~v~l~~G~iv-~~g~~~~l 306 (346)
+||++++ |++|+++ ..|+.++.
T Consensus 493 ~~d~i~~-l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 493 TTDDLYL-VHDGKVEPFDGDLEDY 515 (638)
T ss_pred hCCEEEE-EECCEEEEcCCCHHHH
Confidence 9999965 9999997 67777665
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=274.49 Aligned_cols=193 Identities=13% Similarity=0.165 Sum_probs=136.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|... .
T Consensus 3 ~l~i~~ls~~~~~~~---i---l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-----p~~G~I~~~~~~~-~-- 68 (635)
T PRK11147 3 LISIHGAWLSFSDAP---L---LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRIIYEQDLI-V-- 68 (635)
T ss_pred EEEEeeEEEEeCCce---e---EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEeCCCCE-E--
Confidence 699999999997643 3 777999999999999999999999999999999999 9999999987321 0
Q ss_pred cccccccCCCCccceeecc-cccccchhhchHhhH-----H-HH-------------Hhhhhcchhh---ccCCChHHHH
Q 019066 150 FLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIK-----L-WI-------------MEGVRHGELV---IRRSDSSSLR 206 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~-~~~~~~v~qn~~~~~-----~-~v-------------~~~i~~~~~~---~~~~~~~~~~ 206 (346)
+++.|.. +...++++|++.... . .. .+++...... .........+
T Consensus 69 ------------~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 136 (635)
T PRK11147 69 ------------ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLE 136 (635)
T ss_pred ------------EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHH
Confidence 1111111 111122333321000 0 00 1111110000 0000111245
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--------
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------- 269 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------- 269 (346)
.++.++++.+|+.. ++++.+|||||||||+||||| ||||++||.
T Consensus 137 ~~~~~~l~~lgl~~-------------------~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~ 197 (635)
T PRK11147 137 NRINEVLAQLGLDP-------------------DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEG 197 (635)
T ss_pred HHHHHHHHhCCCCC-------------------CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHH
Confidence 67889999999864 677899999999999999999 999999984
Q ss_pred -----CceEEEEec--hhhhccccEEEEEecCCeEee-cCCcccccc
Q 019066 270 -----DKPVVVVTH--GDLLSLTDRARIRTYLGELLG-IPPAKQIFD 308 (346)
Q Consensus 270 -----g~tviiiTH--~~~~~~aDri~v~l~~G~iv~-~g~~~~l~~ 308 (346)
+.|||+||| .++..+||+|+ +|++|+++. .|+..+.+.
T Consensus 198 ~L~~~~~tvlivsHd~~~l~~~~d~i~-~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 198 FLKTFQGSIIFISHDRSFIRNMATRIV-DLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhcCeEE-EEECCEEEEecCCHHHHHH
Confidence 679999999 57888999996 499999985 577766544
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=271.54 Aligned_cols=185 Identities=14% Similarity=0.085 Sum_probs=138.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++ ++
T Consensus 322 ~~~l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-----p~~G~i~~~~-~~-- 387 (556)
T PRK11819 322 DKVIEAENLSKSFGDRL---L---IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-----PDSGTIKIGE-TV-- 387 (556)
T ss_pred CeEEEEEeEEEEECCee---e---ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECC-ce--
Confidence 45899999999997642 4 777999999999999999999999999999999999 9999999843 21
Q ss_pred cccccccccCCCCccceeecc-cccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDT-RSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~-~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.++|++|+. ..+..+ +.+++ .++...... ... ...+..+++.+++.+.
T Consensus 388 ------------~i~~v~q~~~~~~~~~tv~e~l-----------~~~~~~~~~-~~~--~~~~~~~l~~~~l~~~---- 437 (556)
T PRK11819 388 ------------KLAYVDQSRDALDPNKTVWEEI-----------SGGLDIIKV-GNR--EIPSRAYVGRFNFKGG---- 437 (556)
T ss_pred ------------EEEEEeCchhhcCCCCCHHHHH-----------Hhhcccccc-ccc--HHHHHHHHHhCCCChh----
Confidence 246777764 233222 44443 332211100 111 2234578999999642
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhh
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDL 281 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||. ..|+|+||| +.+
T Consensus 438 ------------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~ 505 (556)
T PRK11819 438 ------------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFL 505 (556)
T ss_pred ------------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 24888999999999999999999 999999984 358999999 578
Q ss_pred hccccEEEEEecC-CeEe-ecCCccccccC
Q 019066 282 LSLTDRARIRTYL-GELL-GIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~-G~iv-~~g~~~~l~~~ 309 (346)
..+||++++ |++ |++. ..|+.++++++
T Consensus 506 ~~~~d~i~~-l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 506 DRIATHILA-FEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHhCCEEEE-EECCCeEEEecCCHHHHHHH
Confidence 889999965 985 7876 36666555433
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=245.50 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=113.7
Q ss_pred ceeeeEEec-----CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceee
Q 019066 92 MTLSDYDVP-----KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY 166 (346)
Q Consensus 92 L~~isl~i~-----~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~ 166 (346)
+.+++|++. +||+++|+||||||||||+++|+|+++ |++|+|.++|..+ +|++|
T Consensus 10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-----p~~G~i~~~g~~i----------------~~~~q 68 (246)
T cd03237 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-----PDEGDIEIELDTV----------------SYKPQ 68 (246)
T ss_pred cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCCeEEECCceE----------------EEecc
Confidence 555777776 799999999999999999999999999 9999999998533 46666
Q ss_pred cccccc-cchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCC
Q 019066 167 DTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 245 (346)
Q Consensus 167 d~~~~~-~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~ 245 (346)
+..... ..+.+++.... .... .....+.++++.+++.. ..++++.+
T Consensus 69 ~~~~~~~~tv~e~l~~~~-----------~~~~-----~~~~~~~~~l~~l~l~~-----------------~~~~~~~~ 115 (246)
T cd03237 69 YIKADYEGTVRDLLSSIT-----------KDFY-----THPYFKTEIAKPLQIEQ-----------------ILDREVPE 115 (246)
T ss_pred cccCCCCCCHHHHHHHHh-----------hhcc-----ccHHHHHHHHHHcCCHH-----------------HhhCChhh
Confidence 654322 22455433211 0000 01234567888999976 46888999
Q ss_pred CCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEecCC
Q 019066 246 SDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 246 LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l~~G 295 (346)
||||||||++||||| ||||++||. ++|+|+||| +.+..+||++++ |+.+
T Consensus 116 LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~-l~~~ 192 (246)
T cd03237 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV-FEGE 192 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE-EcCC
Confidence 999999999999999 999999983 789999999 567889999964 7543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=270.16 Aligned_cols=180 Identities=14% Similarity=0.092 Sum_probs=134.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|++++|++.. + |+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+++ ++
T Consensus 320 ~~~l~~~~l~~~~~~~~---~---l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-----p~~G~i~~~~-~~-- 385 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKL---L---IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-----PDSGTIKIGE-TV-- 385 (552)
T ss_pred CeEEEEeeEEEEECCee---e---eccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCCeEEEECC-ce--
Confidence 45899999999997532 4 777999999999999999999999999999999999 9999999843 21
Q ss_pred cccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.++|++|+.. .+..+ ++.+|+.++..... .... +.++.++++.+++...
T Consensus 386 ------------~i~~v~q~~~~~~~~~----------tv~e~l~~~~~~~~-~~~~--~~~~~~~l~~~~l~~~----- 435 (552)
T TIGR03719 386 ------------KLAYVDQSRDALDPNK----------TVWEEISGGLDIIQ-LGKR--EVPSRAYVGRFNFKGS----- 435 (552)
T ss_pred ------------EEEEEeCCccccCCCC----------cHHHHHHhhccccc-cCcc--hHHHHHHHHhCCCChh-----
Confidence 2467787742 23222 33334333221110 0111 2245578999999642
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|||+||| +.+.
T Consensus 436 -----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~ 504 (552)
T TIGR03719 436 -----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLD 504 (552)
T ss_pred -----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 24788999999999999999999 999999984 458999999 5788
Q ss_pred ccccEEEEEecC-CeEe-ecCCc
Q 019066 283 SLTDRARIRTYL-GELL-GIPPA 303 (346)
Q Consensus 283 ~~aDri~v~l~~-G~iv-~~g~~ 303 (346)
.+||++++ |++ |+++ ..|+.
T Consensus 505 ~~~d~i~~-l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 505 RIATHILA-FEGDSHVEWFEGNY 526 (552)
T ss_pred HhCCEEEE-EECCCeEEEeCCCH
Confidence 89999965 986 5776 34544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=295.51 Aligned_cols=209 Identities=15% Similarity=0.084 Sum_probs=160.2
Q ss_pred hhHHHHHHhhhhhhhhcc---CCCcEEEeeeEEEeCCCC-------------------------------ceecccCcee
Q 019066 49 RDAVFREVLQSYDQLRTR---IGSLTDAKNKILSYTPGA-------------------------------WIENVGGMTL 94 (346)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~y~~~~-------------------------------~~~~l~~L~~ 94 (346)
+..|+.+++..++..... ....++++|++|.|+... ...+ |+|
T Consensus 368 s~~RI~~fL~~~e~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~---l~~ 444 (1490)
T TIGR01271 368 AITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPV---LKN 444 (1490)
T ss_pred HHHHHHHHhcCcccccccccCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcc---eee
Confidence 345677777654322111 123489999999995310 0113 677
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccc
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 174 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~ 174 (346)
+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|. ++|++|++..+.
T Consensus 445 i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-----~~~G~i~~~g~-----------------iayv~Q~~~l~~-- 500 (1490)
T TIGR01271 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-----PSEGKIKHSGR-----------------ISFSPQTSWIMP-- 500 (1490)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCE-----------------EEEEeCCCccCC--
Confidence 999999999999999999999999999999999 99999999872 257777655443
Q ss_pred hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHH
Q 019066 175 ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 254 (346)
Q Consensus 175 v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv 254 (346)
.++++||.++... ..++..++++.++|.+++..+|+|+.|.||+++ .+||||||||+
T Consensus 501 ---------~Ti~eNI~~g~~~--------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g------~~LSgGqkqRi 557 (1490)
T TIGR01271 501 ---------GTIKDNIIFGLSY--------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG------ITLSGGQRARI 557 (1490)
T ss_pred ---------ccHHHHHHhcccc--------chHHHHHHHHHHhHHHHHHhccccccccccCcC------CCcCHHHHHHH
Confidence 3566666655321 112345566777888888999999999999994 49999999999
Q ss_pred HHHHhc---------CccccCCCC----------------CceEEEEech-hhhccccEEEEEecCCeEeecCCcccccc
Q 019066 255 IVATTF---------NCPYLSFRD----------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 255 ~IArAL---------DEPts~Ld~----------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+||||+ ||||++||. ++|+|+|||+ .....||+|+ +|++|++++.|+++++..
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii-~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKIL-LLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEE-EEECCEEEEEcCHHHHHh
Confidence 999999 999999984 7899999992 3334599996 499999999999988865
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=237.96 Aligned_cols=160 Identities=12% Similarity=0.115 Sum_probs=118.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE-ECceeCCCcccccccccCCCCccceeecccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 170 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~-~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~ 170 (346)
|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|. ++|..+. ++ +....
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-----~~sG~i~~~~~~~~~--------------~~---~~~~l 60 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-----PDEGDFIGLRGDALP--------------LG---ANSFI 60 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCCCEEEecCceec--------------cc---ccccc
Confidence 667999999999999999999999999999999999 9999997 7765431 01 11222
Q ss_pred cccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 171 LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 171 ~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
+..+ +.+|+.++. .... ...... ...+.+..++.. ..++++.+||+|
T Consensus 61 ~~~ltv~enl~~~~-----------~~~~-~~~~~~---~~~~~~~~~l~~-----------------~~~~~~~~lS~G 108 (213)
T PRK15177 61 LPGLTGEENARMMA-----------SLYG-LDGDEF---SHFCYQLTQLEQ-----------------CYTDRVSEYSVT 108 (213)
T ss_pred CCcCcHHHHHHHHH-----------HHcC-CCHHHH---HHHHHHHhChhH-----------------HhhchHhhcCHH
Confidence 2232 445544322 1111 111211 223345566665 457889999999
Q ss_pred HHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCc
Q 019066 250 KQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 250 qrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
||||++||||| |||++++|+ +.|+|++|| ..+..+||++++ |++|+++..++.
T Consensus 109 ~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~-l~~G~i~~~~~~ 187 (213)
T PRK15177 109 MKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGV-LLHGKITMCEDL 187 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEE-EECCeEEEeCCH
Confidence 99999999999 999999874 678999999 567789999965 999999998877
Q ss_pred ccc
Q 019066 304 KQI 306 (346)
Q Consensus 304 ~~l 306 (346)
++.
T Consensus 188 ~~~ 190 (213)
T PRK15177 188 AQA 190 (213)
T ss_pred HHH
Confidence 654
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=272.59 Aligned_cols=179 Identities=12% Similarity=0.114 Sum_probs=137.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|+++.. + |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+++.
T Consensus 506 ~~~L~~~~ls~~y~~~~~--i---l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-----p~~G~I~~~~~---- 571 (718)
T PLN03073 506 PPIISFSDASFGYPGGPL--L---FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-----PSSGTVFRSAK---- 571 (718)
T ss_pred CceEEEEeeEEEeCCCCe--e---EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCceEEECCc----
Confidence 368999999999965433 3 777999999999999999999999999999999999 99999998652
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
..++|++|+.. ..+ +.++..+.... ... ...++++.++++.+++.+.
T Consensus 572 -----------~~igyv~Q~~~--~~l~~~~~~~~~~~~----------~~~----~~~~~~i~~~L~~~gl~~~----- 619 (718)
T PLN03073 572 -----------VRMAVFSQHHV--DGLDLSSNPLLYMMR----------CFP----GVPEQKLRAHLGSFGVTGN----- 619 (718)
T ss_pred -----------eeEEEEecccc--ccCCcchhHHHHHHH----------hcC----CCCHHHHHHHHHHCCCChH-----
Confidence 13467777642 111 22222111100 000 0113567889999999742
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|+|+||| +.+.
T Consensus 620 -----------~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~ 688 (718)
T PLN03073 620 -----------LALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLIS 688 (718)
T ss_pred -----------HhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHH
Confidence 35788999999999999999999 999999984 459999999 5788
Q ss_pred ccccEEEEEecCCeEe-ecCCcc
Q 019066 283 SLTDRARIRTYLGELL-GIPPAK 304 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv-~~g~~~ 304 (346)
.+||++++ |++|+++ ..|+.+
T Consensus 689 ~~~drv~~-l~~G~i~~~~g~~~ 710 (718)
T PLN03073 689 GSVDELWV-VSEGKVTPFHGTFH 710 (718)
T ss_pred HhCCEEEE-EECCEEEEeCCCHH
Confidence 89999965 9999998 566554
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=269.20 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=134.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++|+++.|++. . |+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++ +
T Consensus 338 ~~~l~~~~ls~~~~~~--~-----l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-----p~~G~I~~~---~-- 400 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF--S-----LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPE---L-- 400 (590)
T ss_pred ceEEEEcceEEEECCE--E-----EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEe---e--
Confidence 4689999999999652 2 777999999999999999999999999999999999 999999885 1
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.++|++|+......+ |.+++. +.... .. ....+.++++.+++.+
T Consensus 401 ------------~i~y~~Q~~~~~~~~tv~e~l~-----------~~~~~---~~---~~~~~~~~L~~l~l~~------ 445 (590)
T PRK13409 401 ------------KISYKPQYIKPDYDGTVEDLLR-----------SITDD---LG---SSYYKSEIIKPLQLER------ 445 (590)
T ss_pred ------------eEEEecccccCCCCCcHHHHHH-----------HHhhh---cC---hHHHHHHHHHHCCCHH------
Confidence 235777775433322 444433 21110 00 1234678899999986
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|+|+|||
T Consensus 446 -----------~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~ 514 (590)
T PRK13409 446 -----------LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514 (590)
T ss_pred -----------HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46899999999999999999999 999999983 789999999
Q ss_pred hhhhccccEEEEEecCCeEeecCC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~ 302 (346)
+++..+|||+++ |+ |++...|.
T Consensus 515 ~~~~~~aDrviv-l~-~~~~~~g~ 536 (590)
T PRK13409 515 YMIDYISDRLMV-FE-GEPGKHGH 536 (590)
T ss_pred HHHHHhCCEEEE-Ec-Ccceeeee
Confidence 568889999964 75 58877776
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=270.86 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=134.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+++||+|++|++++|+||||||||||+++|+|+++ |++|+|.+ |.++
T Consensus 317 ~~~l~~~~l~~~~~~~~---i---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-----p~~G~i~~-~~~~-- 382 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQ---L---VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-----ADSGRIHC-GTKL-- 382 (635)
T ss_pred CceEEEeeeEEEECCeE---E---EcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEE-CCCc--
Confidence 45799999999997632 4 677999999999999999999999999999999999 99999998 5432
Q ss_pred cccccccccCCCCccceeeccc-ccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTR-SLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~-~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.++|++|+.. .+..+ ++.+++.++.... .. .....++.++++.+++...
T Consensus 383 ------------~i~y~~q~~~~l~~~~----------tv~e~l~~~~~~~-~~--~~~~~~~~~~l~~~~l~~~----- 432 (635)
T PRK11147 383 ------------EVAYFDQHRAELDPEK----------TVMDNLAEGKQEV-MV--NGRPRHVLGYLQDFLFHPK----- 432 (635)
T ss_pred ------------EEEEEeCcccccCCCC----------CHHHHHHhhcccc-cc--cchHHHHHHHHHhcCCCHH-----
Confidence 2367776542 22222 2333333221100 00 1113457788999998642
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|||+||| .++.
T Consensus 433 -----------~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 433 -----------RAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVD 501 (635)
T ss_pred -----------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 35788999999999999999999 999999984 569999999 5688
Q ss_pred ccccEEEEEec-CCeEeec
Q 019066 283 SLTDRARIRTY-LGELLGI 300 (346)
Q Consensus 283 ~~aDri~v~l~-~G~iv~~ 300 (346)
.+||++++ |+ +|+++..
T Consensus 502 ~~~d~i~~-l~~~g~i~~~ 519 (635)
T PRK11147 502 NTVTECWI-FEGNGKIGRY 519 (635)
T ss_pred HhcCEEEE-EeCCCeEEEc
Confidence 89999965 87 8998764
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=230.60 Aligned_cols=194 Identities=15% Similarity=0.127 Sum_probs=141.7
Q ss_pred cEEEeeeEEEeCCCCc--eecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~--~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
|+++.|+.+.|..+.. .++ |+++||+|.+|+++.|+|.||||||||+|+|+|-+. |++|+|+++|.++..
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~---l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-----~t~G~I~Idg~dVtk 72 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRA---LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-----PTSGQILIDGVDVTK 72 (263)
T ss_pred CcccccceeeecCCChhHHHH---HhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-----cCCceEEECceeccc
Confidence 4678888888865532 236 555999999999999999999999999999999999 999999999999972
Q ss_pred cccccccccCCCCccceeecccc--cccchhhchHhhHHHHHhhhhcchhhcc--CCC---hHHHHHHHHHHHHHcCC--
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRS--LSDDASDNINMIKLWIMEGVRHGELVIR--RSD---SSSLRNRMRCKAHKIGC-- 218 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~--~~~~v~qn~~~~~~~v~~~i~~~~~~~~--~~~---~~~~~~~~~~~l~~~~l-- 218 (346)
....+. ...++.+|||+.. +..+ ++.+|+.+...+.. ... ....++...+.+..+++
T Consensus 73 ~~~~~R----A~~larVfQdp~~gt~~~l----------TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgL 138 (263)
T COG1101 73 KSVAKR----ANLLARVFQDPLAGTAPEL----------TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGL 138 (263)
T ss_pred CCHHHH----hhHHHHHhcchhhCCcccc----------cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccch
Confidence 111111 1123445555431 2222 56666665443210 111 12233344455666655
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------Cce
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKP 272 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~t 272 (346)
++ .++.+..-|||||||-++++.|. ||-|++||+ +.|
T Consensus 139 en-----------------rL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klT 201 (263)
T COG1101 139 EN-----------------RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLT 201 (263)
T ss_pred hh-----------------hhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCc
Confidence 44 56888999999999999999997 999999997 889
Q ss_pred EEEEec--hhhhccccEEEEEecCCeEeecCCc
Q 019066 273 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 273 viiiTH--~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
.+|||| +.+.++.+|.+ +|++|+||.+-.-
T Consensus 202 tlMVTHnm~~Al~yG~RlI-mLh~G~IvlDv~g 233 (263)
T COG1101 202 TLMVTHNMEDALDYGNRLI-MLHSGKIVLDVTG 233 (263)
T ss_pred eEEEeccHHHHHhhCCeEE-EEeCCeEEEEccc
Confidence 999999 68999999996 4999999987543
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=268.88 Aligned_cols=181 Identities=15% Similarity=0.137 Sum_probs=138.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC---CCceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p---~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
|+|+|++|++||+++|+||||||||||+++|+|..+ + .+|+|.++|.++. ... .++.++|++|+.
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~-----~~~~~~G~i~~~g~~~~------~~~-~~~~i~yv~Q~~ 108 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP-----KGVKGSGSVLLNGMPID------AKE-MRAISAYVQQDD 108 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEECC------HHH-Hhhhceeecccc
Confidence 666999999999999999999999999999999987 5 3799999999864 111 233556777766
Q ss_pred cccccchhhchHhhHHHHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCC
Q 019066 169 RSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 246 (346)
Q Consensus 169 ~~~~~~v~qn~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~L 246 (346)
..+..+ +|++|+.++.... .....++.++++.++++.+|+.+ +.+|.||+.+ ....|
T Consensus 109 ~~~~~l----------TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~----~~~~L 167 (617)
T TIGR00955 109 LFIPTL----------TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-------CANTRIGVPG----RVKGL 167 (617)
T ss_pred ccCccC----------cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh-------cCcCccCCCC----CCCCc
Confidence 544332 4444444433211 11223456678999999999976 2355555431 12479
Q ss_pred CHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h-hhhccccEEEEEecCCeEe
Q 019066 247 DVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G-DLLSLTDRARIRTYLGELL 298 (346)
Q Consensus 247 SgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~-~~~~~aDri~v~l~~G~iv 298 (346)
|||||||++||||| ||||++||. |+|+|+++| . .+.++||++++ |++|+++
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~l-l~~G~~v 246 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL-MAEGRVA 246 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEE-eeCCeEE
Confidence 99999999999999 999999984 899999999 2 57889999965 9999999
Q ss_pred ecCCcccc
Q 019066 299 GIPPAKQI 306 (346)
Q Consensus 299 ~~g~~~~l 306 (346)
..|+++++
T Consensus 247 ~~G~~~~~ 254 (617)
T TIGR00955 247 YLGSPDQA 254 (617)
T ss_pred EECCHHHH
Confidence 99999877
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-30 Score=217.74 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=103.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++|++++|++.. + |+++||++++||+++|+||||||||||+++|+|+++ |++|+|+++|+.
T Consensus 1 l~~~~l~~~~~~~~---~---l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-----~~~G~i~~~~~~------ 63 (144)
T cd03221 1 IELENLSKTYGGKL---L---LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-----PDEGIVTWGSTV------ 63 (144)
T ss_pred CEEEEEEEEECCce---E---EEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-----CCceEEEECCeE------
Confidence 57899999997642 4 777999999999999999999999999999999999 999999998731
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.++|+++
T Consensus 64 ---------~i~~~~~---------------------------------------------------------------- 70 (144)
T cd03221 64 ---------KIGYFEQ---------------------------------------------------------------- 70 (144)
T ss_pred ---------EEEEEcc----------------------------------------------------------------
Confidence 1122211
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhhcccc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLTD 286 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~~~aD 286 (346)
||+||+||++||||| ||||++||. +.|+|++|| +.+..+||
T Consensus 71 ---------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d 135 (144)
T cd03221 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVAT 135 (144)
T ss_pred ---------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC
Confidence 999999999999999 999999984 789999999 56778999
Q ss_pred EEEEEecCCe
Q 019066 287 RARIRTYLGE 296 (346)
Q Consensus 287 ri~v~l~~G~ 296 (346)
++++ |++|+
T Consensus 136 ~v~~-l~~g~ 144 (144)
T cd03221 136 KIIE-LEDGK 144 (144)
T ss_pred EEEE-EeCCC
Confidence 9965 98875
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=279.92 Aligned_cols=198 Identities=15% Similarity=0.097 Sum_probs=145.0
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+++++||++.|+.+. ...+ |+|||++|++||++||+||||||||||+++|+|+.+... +++|+|.++|+++.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~i---L~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~--~~~G~I~i~G~~~~-- 831 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVI---LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGV--ITGGDRLVNGRPLD-- 831 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEe---eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCC--cceeEEEECCEECC--
Confidence 589999999995211 1225 666999999999999999999999999999999986222 57899999999874
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc--CCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR--RSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. . .++.++|++|+...+..+ +|++++.++..... ..+..+.+++++++++.++|.+.
T Consensus 832 ----~-~-~~~~i~yv~Q~~~~~~~~----------Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~----- 890 (1394)
T TIGR00956 832 ----S-S-FQRSIGYVQQQDLHLPTS----------TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY----- 890 (1394)
T ss_pred ----h-h-hhcceeeecccccCCCCC----------CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-----
Confidence 1 1 234567888765443332 34444443322111 12234556788999999999762
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc----------CccccCCCC----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL----------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
.++.|++. ...||||||||++||+|| ||||++||. |+|||++||
T Consensus 891 --~d~~v~~~------~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~ 962 (1394)
T TIGR00956 891 --ADAVVGVP------GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQP 962 (1394)
T ss_pred --CCCeeCCC------CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 12233322 227999999999999998 999999984 899999999
Q ss_pred hh-hhccccEEEEEecCC-eEeecCCcc
Q 019066 279 GD-LLSLTDRARIRTYLG-ELLGIPPAK 304 (346)
Q Consensus 279 ~~-~~~~aDri~v~l~~G-~iv~~g~~~ 304 (346)
+. +.+.+|++++ |++| ++++.|++.
T Consensus 963 ~~~~~~~~D~vl~-L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 963 SAILFEEFDRLLL-LQKGGQTVYFGDLG 989 (1394)
T ss_pred CHHHHHhcCEEEE-EcCCCEEEEECCcc
Confidence 33 4577999965 9987 999999874
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-30 Score=214.78 Aligned_cols=166 Identities=16% Similarity=0.192 Sum_probs=134.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
++.++||+.+.++.-. |-+|||+|.+||++.|+||||||||||+..+.|.+.... .-+|+++++++++.
T Consensus 2 ~l~l~nvsl~l~g~cL------La~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F--~~~G~~~l~~~~l~--- 70 (213)
T COG4136 2 MLCLKNVSLRLPGSCL------LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF--SCTGELWLNEQRLD--- 70 (213)
T ss_pred ceeeeeeeecCCCceE------EEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc--ceeeEEEECCeecc---
Confidence 5789999988877543 777999999999999999999999999999999998443 35799999999986
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....++++|+.|||.-+|..+ |.||+.+ .+.. ..+....+..+..+|++.||..
T Consensus 71 ---~lPa~qRq~GiLFQD~lLFphlsVg~Nl~f-----------Alp~--~~KG~aRr~~a~aAL~~~gL~g-------- 126 (213)
T COG4136 71 ---MLPAAQRQIGILFQDALLFPHLSVGQNLLF-----------ALPA--TLKGNARRNAANAALERSGLDG-------- 126 (213)
T ss_pred ---ccchhhhheeeeecccccccccccccceEE-----------ecCc--ccccHHHHhhHHHHHHHhccch--------
Confidence 2333466778888888777766 6666543 2211 1123455667888999999998
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG 279 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~ 279 (346)
..++.|.+||||||.||++-|+| |||+|.||. |..+|+|||+
T Consensus 127 ---------~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 127 ---------AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred ---------hhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 56899999999999999999998 999999883 9999999994
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-30 Score=286.37 Aligned_cols=170 Identities=14% Similarity=0.100 Sum_probs=139.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.+.+ .++|++|++..+
T Consensus 676 L~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-----~~~G~i~~~~-----------------~i~yv~Q~~~l~ 733 (1560)
T PTZ00243 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-----ISEGRVWAER-----------------SIAYVPQQAWIM 733 (1560)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC-----------------eEEEEeCCCccC
Confidence 777999999999999999999999999999999999 9999998632 346777776544
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
.+ ++.+||.++. ....++..++++..++.+++..+|+|++|.+|++ +.+||||||
T Consensus 734 ~~-----------Tv~enI~~~~--------~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~------g~~LSGGQk 788 (1560)
T PTZ00243 734 NA-----------TVRGNILFFD--------EEDAARLADAVRVSQLEADLAQLGGGLETEIGEK------GVNLSGGQK 788 (1560)
T ss_pred CC-----------cHHHHHHcCC--------hhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCC------CCCCCHHHH
Confidence 33 4555555432 1122445667788888888999999999998887 559999999
Q ss_pred HHHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccc
Q 019066 252 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 252 QRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~ 305 (346)
||++||||| ||||++||. |+|+|+||| ......||+|+ +|++|++++.|++++
T Consensus 789 qRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii-~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVV-ALGDGRVEFSGSSAD 867 (1560)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE-EEECCEEEEecCHHH
Confidence 999999999 999999983 789999999 33445799996 499999999999998
Q ss_pred cccC
Q 019066 306 IFDI 309 (346)
Q Consensus 306 l~~~ 309 (346)
++..
T Consensus 868 l~~~ 871 (1560)
T PTZ00243 868 FMRT 871 (1560)
T ss_pred HHhC
Confidence 8754
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=231.26 Aligned_cols=198 Identities=17% Similarity=0.178 Sum_probs=144.2
Q ss_pred cEEEeeeEEEeCCC------------------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCC
Q 019066 70 LTDAKNKILSYTPG------------------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKF 131 (346)
Q Consensus 70 ~l~~~~l~~~y~~~------------------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~ 131 (346)
++.++||++.|.-. ..+.|++| |||+|++|++++++|+|||||||++|+|.|++.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqd---isf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---- 75 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQD---ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---- 75 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhhe---eeeecCCCcEEEEEcCCCCcchhhHHHHhCccc----
Confidence 57788888877410 01236455 999999999999999999999999999999999
Q ss_pred CCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHH
Q 019066 132 ASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 211 (346)
Q Consensus 132 ~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 211 (346)
|++|.|.++|.+-.. .++ .. -+++++++-. ..++.++.+.+-...|...| ...+.+..+++...
T Consensus 76 -p~~G~v~V~G~~Pf~---~~~-~~-~~~~~~v~gq---k~ql~Wdlp~~ds~~v~~~I-------y~Ipd~~F~~r~~~ 139 (325)
T COG4586 76 -PTSGKVRVNGKDPFR---RRE-EY-LRSIGLVMGQ---KLQLWWDLPALDSLEVLKLI-------YEIPDDEFAERLDF 139 (325)
T ss_pred -cCCCeEEecCcCcch---hHH-HH-HHHHHHHhhh---hheeeeechhhhhHHHHHHH-------HhCCHHHHHHHHHH
Confidence 999999999987431 000 00 0012222111 11122333321111221111 12345667788999
Q ss_pred HHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------
Q 019066 212 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------- 269 (346)
Q Consensus 212 ~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------- 269 (346)
+.+.+++++ +++.+.+.||-|||.|+.||.|| ||||-+||-
T Consensus 140 l~eiLdl~~-----------------~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 140 LTEILDLEG-----------------FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred HHHHhcchh-----------------hhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 999999998 56889999999999999999999 999999982
Q ss_pred ----CceEEEEec--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 270 ----DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 270 ----g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.||++.|| +++..+||||+ .++.|+++.+|+.+++..
T Consensus 203 n~~~~aTVllTTH~~~di~~lc~rv~-~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 203 NEERQATVLLTTHIFDDIATLCDRVL-LIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred HHhhCceEEEEecchhhHHHhhhheE-EeeCCcEeecccHHHHHH
Confidence 899999999 78999999996 499999999988766543
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-29 Score=223.85 Aligned_cols=168 Identities=14% Similarity=0.183 Sum_probs=134.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+||||++.+||.+||||+||||||||+|+|+|.++ |++|+|.++|+-.. ...+ ..||.++-
T Consensus 43 L~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-----Pt~G~v~v~G~v~~------li~l---g~Gf~pel---- 104 (249)
T COG1134 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-----PTSGKVKVTGKVAP------LIEL---GAGFDPEL---- 104 (249)
T ss_pred ecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-----CCCceEEEcceEeh------hhhc---ccCCCccc----
Confidence 566999999999999999999999999999999999 99999999996532 0111 01222111
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
+..+|+.+.. ... ....++.++++.++.+...|.+ +.+.+..++|.||+
T Consensus 105 --TGreNi~l~~-----------~~~-G~~~~ei~~~~~eIieFaELG~-----------------fi~~PvktYSSGM~ 153 (249)
T COG1134 105 --TGRENIYLRG-----------LIL-GLTRKEIDEKVDEIIEFAELGD-----------------FIDQPVKTYSSGMY 153 (249)
T ss_pred --chHHHHHHHH-----------HHh-CccHHHHHHHHHHHHHHHHHHH-----------------HhhCchhhccHHHH
Confidence 1344544322 111 2346788999999999999999 56999999999999
Q ss_pred HHHHHHHhc---------CccccCCC----------------CCceEEEEec--hhhhccccEEEEEecCCeEeecCCcc
Q 019066 252 YNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 252 QRv~IArAL---------DEPts~Ld----------------~g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~ 304 (346)
-|+++|-|. ||-.+.-| ++.|+|+||| +.+.++|||++ +|++|+|...|+++
T Consensus 154 aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i-~l~~G~i~~~G~~~ 232 (249)
T COG1134 154 ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAI-WLEHGQIRMEGSPE 232 (249)
T ss_pred HHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeE-EEeCCEEEEcCCHH
Confidence 999999998 88888855 2899999999 67999999996 59999999999999
Q ss_pred ccccC
Q 019066 305 QIFDI 309 (346)
Q Consensus 305 ~l~~~ 309 (346)
+++..
T Consensus 233 ~vi~~ 237 (249)
T COG1134 233 EVIPA 237 (249)
T ss_pred HHHHH
Confidence 88754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=263.68 Aligned_cols=208 Identities=10% Similarity=-0.023 Sum_probs=134.9
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++|++++|++.. + |+|+||+|.+|+++|||||||||||||+++|+|..... .|++|+|.+.++++...
T Consensus 176 ~~I~i~nls~~y~~~~---l---l~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g--~p~~g~I~~~~Q~~~g~ 247 (718)
T PLN03073 176 KDIHMENFSISVGGRD---L---IVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDG--IPKNCQILHVEQEVVGD 247 (718)
T ss_pred eeEEEceEEEEeCCCE---E---EECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCCCCEEEEEeccCCCC
Confidence 3699999999997543 3 77799999999999999999999999999999975211 28899998776654210
Q ss_pred ccccccc----cCCCCccceeecccccccchhhchHhhHHHHHhhh-----------------hcchhhccCCChHHHHH
Q 019066 149 YFLQEYT----IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGV-----------------RHGELVIRRSDSSSLRN 207 (346)
Q Consensus 149 ~~~~~~~----~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i-----------------~~~~~~~~~~~~~~~~~ 207 (346)
...... .......+ .....++++|++.+.......+. ..-............++
T Consensus 248 -~~t~~~~v~~~~~~~~~~----~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (718)
T PLN03073 248 -DTTALQCVLNTDIERTQL----LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEA 322 (718)
T ss_pred -CCCHHHHHHHhhHHHHHH----HHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHH
Confidence 000000 00000000 00001222222211110000110 00000000001113456
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--------- 269 (346)
++.++|..+|+.+. ..++++.+||||||||++||||| ||||++||.
T Consensus 323 r~~~~L~~lgl~~~----------------~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~ 386 (718)
T PLN03073 323 RAASILAGLSFTPE----------------MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETY 386 (718)
T ss_pred HHHHHHHHCCCChH----------------HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 77788888888642 35788999999999999999999 999999984
Q ss_pred ----CceEEEEec--hhhhccccEEEEEecCCeEe-ecCCcccc
Q 019066 270 ----DKPVVVVTH--GDLLSLTDRARIRTYLGELL-GIPPAKQI 306 (346)
Q Consensus 270 ----g~tviiiTH--~~~~~~aDri~v~l~~G~iv-~~g~~~~l 306 (346)
+.|+|+||| +.+..+||++++ |++|+++ ..|+.+.+
T Consensus 387 L~~~~~tviivsHd~~~l~~~~d~i~~-l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 387 LLKWPKTFIVVSHAREFLNTVVTDILH-LHGQKLVTYKGDYDTF 429 (718)
T ss_pred HHHcCCEEEEEECCHHHHHHhCCEEEE-EECCEEEEeCCCHHHH
Confidence 789999999 568889999965 9999996 56665544
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=274.38 Aligned_cols=194 Identities=9% Similarity=0.062 Sum_probs=143.2
Q ss_pred cEEEeeeEEEeCCC----------CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE
Q 019066 70 LTDAKNKILSYTPG----------AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 139 (346)
Q Consensus 70 ~l~~~~l~~~y~~~----------~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~ 139 (346)
.+.++||++..+.. ....+ |+|||++|++|++++|+||||||||||+++|+|..+.. +.+|+|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~i---L~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g---~~~G~I~ 940 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQL---LREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIR 940 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceE---eeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC---cccceEE
Confidence 48999999987421 11125 66699999999999999999999999999999987521 3689999
Q ss_pred ECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcC
Q 019066 140 YNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIG 217 (346)
Q Consensus 140 ~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 217 (346)
++|.+.. ... .++.++|++|+...+..+ +|.+++.++.... ...+..+..++++++++.++
T Consensus 941 inG~~~~------~~~-~~~~igyv~Q~d~~~~~l----------TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lg 1003 (1470)
T PLN03140 941 ISGFPKK------QET-FARISGYCEQNDIHSPQV----------TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVE 1003 (1470)
T ss_pred ECCccCC------hHH-hhhheEEEccccccCCCC----------cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCC
Confidence 9998754 111 133457777765544333 4444444432111 11123445567899999999
Q ss_pred CCcccccccceeeeeechhhhcccCC-----CCCCHHHHHHHHHHHhc---------CccccCCCC--------------
Q 019066 218 CEPSVIRKVNFVIFVVDGLAVLKSME-----GDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 269 (346)
Q Consensus 218 l~~~~~~~~~~~~~~v~e~~~~~~~~-----~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------- 269 (346)
|.+ ..++.+ ..||||||||++||++| ||||++||.
T Consensus 1004 L~~-----------------~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~ 1066 (1470)
T PLN03140 1004 LDN-----------------LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1066 (1470)
T ss_pred Chh-----------------HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 986 334443 58999999999999999 999999984
Q ss_pred --CceEEEEec--h-hhhccccEEEEEecC-CeEeecCCcc
Q 019066 270 --DKPVVVVTH--G-DLLSLTDRARIRTYL-GELLGIPPAK 304 (346)
Q Consensus 270 --g~tviiiTH--~-~~~~~aDri~v~l~~-G~iv~~g~~~ 304 (346)
|+|||++|| + .+...||++++ |++ |+++..|++.
T Consensus 1067 ~~g~tVI~t~Hq~~~~i~~~~D~vll-L~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1067 DTGRTVVCTIHQPSIDIFEAFDELLL-MKRGGQVIYSGPLG 1106 (1470)
T ss_pred HCCCEEEEEeCCCCHHHHHhCCEEEE-EcCCCEEEEECCcc
Confidence 899999999 3 46788999965 986 8999999863
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=258.02 Aligned_cols=173 Identities=16% Similarity=0.159 Sum_probs=128.9
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE-----------ECc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNS 142 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~-----------~~g 142 (346)
++++++|+.... + |++++ .+++||++||+||||||||||+|+|+|+++ |++|+|. ++|
T Consensus 77 ~~~~~~yg~~~~--~---L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-----p~~G~i~~~~~~~~~~~~~~G 145 (590)
T PRK13409 77 EEPVHRYGVNGF--K---LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-----PNLGDYEEEPSWDEVLKRFRG 145 (590)
T ss_pred cCceEEecCCce--e---EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-----CCCccccCCCcHHHHHHHhCC
Confidence 348899986443 4 67799 899999999999999999999999999999 9999997 888
Q ss_pred eeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccc
Q 019066 143 SVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 222 (346)
Q Consensus 143 ~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 222 (346)
+++.. +. .........+++.+ +++.+.+.++..++.+++.. ...++++.++++.+++..
T Consensus 146 ~~l~~-~~-~~~~~~~~~~~~~~-------q~~~~~p~~~~~tv~e~l~~----------~~~~~~~~~~l~~l~l~~-- 204 (590)
T PRK13409 146 TELQN-YF-KKLYNGEIKVVHKP-------QYVDLIPKVFKGKVRELLKK----------VDERGKLDEVVERLGLEN-- 204 (590)
T ss_pred hHHHH-HH-HHHhccCcceeecc-------cchhhhhhhhcchHHHHHHh----------hhHHHHHHHHHHHcCCch--
Confidence 87641 00 00000001112222 22334444444456666541 123467889999999986
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH 278 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH 278 (346)
.+++.+.+||||||||++||+|| ||||++||. |.|+|+|||
T Consensus 205 ---------------~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsH 269 (590)
T PRK13409 205 ---------------ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEH 269 (590)
T ss_pred ---------------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 46899999999999999999999 999999883 789999999
Q ss_pred --hhhhccccEEEEEecC
Q 019066 279 --GDLLSLTDRARIRTYL 294 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~ 294 (346)
+.+..+||++.+ |++
T Consensus 270 d~~~l~~~~D~v~v-l~~ 286 (590)
T PRK13409 270 DLAVLDYLADNVHI-AYG 286 (590)
T ss_pred CHHHHHHhCCEEEE-EeC
Confidence 578889999964 875
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-29 Score=276.11 Aligned_cols=199 Identities=14% Similarity=0.144 Sum_probs=141.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|||+++++||+++|+||||||||||+|+|+|..... ..|++|+|.++|+++... ....++.++|++|+...+
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-~~~~~G~I~~~G~~~~~~-----~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF-HIGVEGVITYDGITPEEI-----KKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-CCCceeEEEECCEehHHH-----HhhcCceeEEeccccccC
Confidence 66799999999999999999999999999999986310 117899999999886410 011233567777765555
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhcc------CCChHHHHHH-HHHHHHHcCCCcccccccceeeeeechhhhcccCC
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIR------RSDSSSLRNR-MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 243 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~------~~~~~~~~~~-~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~ 243 (346)
..+ |.|++. ++..... ...+.+..++ ++.+++.+||.+. .+|.|| +..+
T Consensus 151 ~~lTV~E~l~-----------f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-------~~t~vg-----~~~~ 207 (1394)
T TIGR00956 151 PHLTVGETLD-----------FAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHT-------RNTKVG-----NDFV 207 (1394)
T ss_pred CCCCHHHHHH-----------HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccc-------cCceeC-----CCcC
Confidence 443 555544 3322110 1122332333 4668999999762 233333 3456
Q ss_pred CCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec---hhhhccccEEEEEecC
Q 019066 244 GDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---GDLLSLTDRARIRTYL 294 (346)
Q Consensus 244 ~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH---~~~~~~aDri~v~l~~ 294 (346)
..|||||||||+||+|| ||||++||. |+|+|+++| ..+.+++|++++ |++
T Consensus 208 ~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~-L~~ 286 (1394)
T TIGR00956 208 RGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIV-LYE 286 (1394)
T ss_pred CCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEE-EeC
Confidence 78999999999999999 999999984 789999999 358889999965 999
Q ss_pred CeEeecCCcccc--------ccCCCCCChHHHHH
Q 019066 295 GELLGIPPAKQI--------FDIPESSDPENELI 320 (346)
Q Consensus 295 G~iv~~g~~~~l--------~~~~~~~~~~~~~~ 320 (346)
|+++..|+++++ +..|.+..+..++.
T Consensus 287 G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~ 320 (1394)
T TIGR00956 287 GYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLT 320 (1394)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 999999999877 34455444444443
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=217.57 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=98.3
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 153 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (346)
.||+++|++.. + ++++ |+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++
T Consensus 4 ~~l~~~~~~~~---~---l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~i-------- 63 (177)
T cd03222 4 PDCVKRYGVFF---L---LVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-----PNGDNDEWDGITP-------- 63 (177)
T ss_pred CCeEEEECCEE---E---EccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCcEEEECCEEE--------
Confidence 58999997632 3 5555 9999999999999999999999999999999 9999999988543
Q ss_pred cccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeee
Q 019066 154 YTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVV 233 (346)
Q Consensus 154 ~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v 233 (346)
++++|+.
T Consensus 64 --------~~~~q~~----------------------------------------------------------------- 70 (177)
T cd03222 64 --------VYKPQYI----------------------------------------------------------------- 70 (177)
T ss_pred --------EEEcccC-----------------------------------------------------------------
Confidence 1222110
Q ss_pred chhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------C-ceEEEEec--hhhhccc
Q 019066 234 DGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D-KPVVVVTH--GDLLSLT 285 (346)
Q Consensus 234 ~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g-~tviiiTH--~~~~~~a 285 (346)
.||||||||++||||| ||||++||. + .|+|++|| +.+.++|
T Consensus 71 -----------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~ 139 (177)
T cd03222 71 -----------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS 139 (177)
T ss_pred -----------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC
Confidence 1999999999999999 999999983 3 89999999 5678899
Q ss_pred cEEEEEecCCeE
Q 019066 286 DRARIRTYLGEL 297 (346)
Q Consensus 286 Dri~v~l~~G~i 297 (346)
|++++ |+++-.
T Consensus 140 d~i~~-l~~~~~ 150 (177)
T cd03222 140 DRIHV-FEGEPG 150 (177)
T ss_pred CEEEE-EcCCCc
Confidence 99964 876543
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-28 Score=244.18 Aligned_cols=192 Identities=16% Similarity=0.112 Sum_probs=139.2
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|.++|+++.|++... |+++||+|.+|+++||||+||||||||||+|+|... |++|+|...+. +
T Consensus 2 ~~i~~~~ls~~~g~~~l------~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-----~~~G~i~~~~~-~--- 66 (530)
T COG0488 2 SMITLENLSLAYGDRPL------LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-----PDSGEVTRPKG-L--- 66 (530)
T ss_pred ceEEEeeeEEeeCCcee------ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-----CCCCeEeecCC-c---
Confidence 47999999999966543 788999999999999999999999999999999999 99999998752 1
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHh------hhh----------cchh--hccCCChHHHHHHH
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIME------GVR----------HGEL--VIRRSDSSSLRNRM 209 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~------~i~----------~~~~--~~~~~~~~~~~~~~ 209 (346)
.+++..|+....... |.+.+......+.+ .+. .+.. .......-..+.++
T Consensus 67 -----------~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~ 135 (530)
T COG0488 67 -----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARA 135 (530)
T ss_pred -----------eEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHH
Confidence 225666666555432 44333221110000 000 0000 00000112335778
Q ss_pred HHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------
Q 019066 210 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------- 269 (346)
Q Consensus 210 ~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------- 269 (346)
..+|..+|+.+ . +++..+||||||.||+||+|| ||||+.||-
T Consensus 136 ~~~L~gLg~~~-----------------~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~ 197 (530)
T COG0488 136 EEALLGLGFPD-----------------E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK 197 (530)
T ss_pred HHHHhcCCCCc-----------------c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH
Confidence 88999999987 3 678899999999999999999 999999982
Q ss_pred ---CceEEEEec--hhhhccccEEEEEecCCeEeec-CCcccc
Q 019066 270 ---DKPVVVVTH--GDLLSLTDRARIRTYLGELLGI-PPAKQI 306 (346)
Q Consensus 270 ---g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~-g~~~~l 306 (346)
| |+|+||| .++-..|++|+ .++.|++... |.-+..
T Consensus 198 ~~~g-tviiVSHDR~FLd~V~t~I~-~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 198 RYPG-TVIVVSHDRYFLDNVATHIL-ELDRGKLTPYKGNYSSY 238 (530)
T ss_pred hCCC-cEEEEeCCHHHHHHHhhheE-EecCCceeEecCCHHHH
Confidence 6 9999999 57889999996 5999987654 444433
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=207.21 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=103.3
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+++++++.|++.. + |+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|+++|.++..
T Consensus 1 ~~~~~~~~~~~~~---~---l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-----~~~G~i~~~~~~~~~---- 65 (157)
T cd00267 1 EIENLSFRYGGRT---A---LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-----PTSGEILIDGKDIAK---- 65 (157)
T ss_pred CeEEEEEEeCCee---e---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCccEEEECCEEccc----
Confidence 3689999997642 3 777999999999999999999999999999999999 999999999987640
Q ss_pred cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
... .. ....+++
T Consensus 66 -----------~~~-------------------------------------~~-------~~~~i~~------------- 77 (157)
T cd00267 66 -----------LPL-------------------------------------EE-------LRRRIGY------------- 77 (157)
T ss_pred -----------CCH-------------------------------------HH-------HHhceEE-------------
Confidence 000 00 0000111
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhhhcc
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~~~~ 284 (346)
..+||+||+||++||||+ ||||++||. +.|+|++|| +.+..+
T Consensus 78 -----------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 78 -----------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred -----------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 112999999999999999 999999984 589999999 577788
Q ss_pred ccEEEEEecCCe
Q 019066 285 TDRARIRTYLGE 296 (346)
Q Consensus 285 aDri~v~l~~G~ 296 (346)
||++++ +++|+
T Consensus 147 ~d~i~~-l~~g~ 157 (157)
T cd00267 147 ADRVIV-LKDGK 157 (157)
T ss_pred CCEEEE-EeCcC
Confidence 999965 88764
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-28 Score=270.26 Aligned_cols=206 Identities=15% Similarity=0.178 Sum_probs=147.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC---CceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
|+|||+.|++||+++|+||||||||||+|+|+|.++ |+ +|+|.++|+++. +.. .++.++|++|+.
T Consensus 181 L~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-----~~~~~~G~I~~nG~~~~------~~~-~~~~i~yv~Q~d 248 (1470)
T PLN03140 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGEITYNGYRLN------EFV-PRKTSAYISQND 248 (1470)
T ss_pred ccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-----CCCcceeEEEECCEech------hhc-ccceeEEecccc
Confidence 666999999999999999999999999999999998 77 999999999875 111 144678888876
Q ss_pred cccccc-hhhchHhhHHHHHhhhhcch--hhccC------CChHH--------------HHHHHHHHHHHcCCCcccccc
Q 019066 169 RSLSDD-ASDNINMIKLWIMEGVRHGE--LVIRR------SDSSS--------------LRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 169 ~~~~~~-v~qn~~~~~~~v~~~i~~~~--~~~~~------~~~~~--------------~~~~~~~~l~~~~l~~~~~~~ 225 (346)
..+..+ |.|++.+....-...-.... ...+. .+..+ ....+.++++.+||.+
T Consensus 249 ~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~----- 323 (1470)
T PLN03140 249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDI----- 323 (1470)
T ss_pred cCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcc-----
Confidence 666554 66666553321000000000 00000 00000 0123567899999975
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
..+|.|| ++.+..|||||||||+||++| ||||+|||. |+|+|+++|
T Consensus 324 --~~~t~vg-----~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hq 396 (1470)
T PLN03140 324 --CKDTIVG-----DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQ 396 (1470)
T ss_pred --ccCceeC-----CccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 2345554 456789999999999999999 999999984 789999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccc--------cCCCCCChHHHHHHH
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIF--------DIPESSDPENELIIV 322 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~--------~~~~~~~~~~~~~~~ 322 (346)
..+.+++|+|++ |++|+++..|+.+++. ..|....+..++..+
T Consensus 397 p~~~i~~lfD~vil-L~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v 449 (1470)
T PLN03140 397 PAPETFDLFDDIIL-LSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEV 449 (1470)
T ss_pred CCHHHHHHhheEEE-eeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHh
Confidence 368899999965 9999999999998874 456666666666543
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=207.87 Aligned_cols=128 Identities=20% Similarity=0.164 Sum_probs=96.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+||+|++|++++|+||||||||||+|+|. +++|++.++|..-. ..+..+.|
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il---------~~~G~v~~~~~~~~---------~~~~~~~~-------- 64 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---------YASGKARLISFLPK---------FSRNKLIF-------- 64 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHh---------hcCCcEEECCcccc---------cccccEEE--------
Confidence 56699999999999999999999999999983 24799988764211 00000111
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
++| .++++.+++... .+++++.+||||||
T Consensus 65 ---~~q--------------------------------~~~l~~~~L~~~----------------~~~~~~~~LSgGq~ 93 (176)
T cd03238 65 ---IDQ--------------------------------LQFLIDVGLGYL----------------TLGQKLSTLSGGEL 93 (176)
T ss_pred ---EhH--------------------------------HHHHHHcCCCcc----------------ccCCCcCcCCHHHH
Confidence 111 246788888652 14778999999999
Q ss_pred HHHHHHHhc-----------CccccCCCC----------------CceEEEEec-hhhhccccEEEEEecCCeE
Q 019066 252 YNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGEL 297 (346)
Q Consensus 252 QRv~IArAL-----------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v~l~~G~i 297 (346)
||++||||| ||||++||. |.|||++|| ....+.||++++ |++|+.
T Consensus 94 qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~-l~~g~~ 166 (176)
T cd03238 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIID-FGPGSG 166 (176)
T ss_pred HHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE-ECCCCC
Confidence 999999998 999999884 899999999 333467999964 966554
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=204.99 Aligned_cols=187 Identities=17% Similarity=0.155 Sum_probs=135.7
Q ss_pred cEEEeeeEEEeC----CCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 70 LTDAKNKILSYT----PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 70 ~l~~~~l~~~y~----~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.|.++||+|+|. ++-...+ |+++||+++.||+++|-||||+|||||+|+|.+-|. |++|+|++.-..-
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV---~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-----~d~G~I~v~H~g~ 75 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPV---LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-----PDEGQILVRHEGE 75 (235)
T ss_pred eeeeecchhheEeeecCCEEeee---eeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-----CCCceEEEEeCcc
Confidence 489999999983 2322235 666999999999999999999999999999999999 9999999964432
Q ss_pred CCccc-ccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 146 DGTYF-LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 146 ~~~~~-~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
..... .+... +..-.+.-+|+|.|.+...+. ...+-+..++. ....+.+..++++..+|.++++++.+
T Consensus 76 ~vdl~~a~pr~--------vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll-~~gv~~~~a~~~a~~Ll~rLnlperL- 145 (235)
T COG4778 76 WVDLVTAEPRE--------VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL-ARGVPREVARAKAADLLTRLNLPERL- 145 (235)
T ss_pred hhhhhccChHH--------HHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH-HcCCCHHHHHHHHHHHHHHcCCCHHH-
Confidence 11000 11111 111122334455555544443 33343444433 23445677889999999999999864
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
..-.|.++||||||||-|||.+ ||||++||. |.++|=|-|
T Consensus 146 ---------------W~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFH 210 (235)
T COG4778 146 ---------------WSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH 210 (235)
T ss_pred ---------------hcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeec
Confidence 4668999999999999999998 999999984 899999999
Q ss_pred -hhh-hccccEEE
Q 019066 279 -GDL-LSLTDRAR 289 (346)
Q Consensus 279 -~~~-~~~aDri~ 289 (346)
+.+ ...|||+.
T Consensus 211 Deevre~vadR~~ 223 (235)
T COG4778 211 DEEVREAVADRLL 223 (235)
T ss_pred cHHHHHHHhhhee
Confidence 444 45799994
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-27 Score=208.28 Aligned_cols=162 Identities=12% Similarity=0.174 Sum_probs=119.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+++.+|++..-++.. . +.++||++.+||.+-|.||||||||||+|+|+|+.+ |++|+|+++|..+..
T Consensus 2 ~L~a~~L~~~R~e~~---l---f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-----p~~G~v~~~~~~i~~-- 68 (209)
T COG4133 2 MLEAENLSCERGERT---L---FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-----PDAGEVYWQGEPIQN-- 68 (209)
T ss_pred cchhhhhhhccCcce---e---ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-----CCCCeEEecCCCCcc--
Confidence 477888887766543 3 777999999999999999999999999999999999 999999999988751
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
..+.+ ++..-|.-........+ ++.+|+.|-...+.. ...+.+.++++.+||..
T Consensus 69 ~~~~~---~~~l~yLGH~~giK~eL----------Ta~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g--------- 122 (209)
T COG4133 69 VRESY---HQALLYLGHQPGIKTEL----------TALENLHFWQRFHGS----GNAATIWEALAQVGLAG--------- 122 (209)
T ss_pred chhhH---HHHHHHhhccccccchh----------hHHHHHHHHHHHhCC----CchhhHHHHHHHcCccc---------
Confidence 00000 01111221122222222 444444443222221 22456888999999998
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
+.+-+..+||-|||+||+|||-+ |||+++||+ |-.||+.||
T Consensus 123 --------~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttH 188 (209)
T COG4133 123 --------LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188 (209)
T ss_pred --------ccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 56889999999999999999997 999999985 778999999
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-27 Score=242.29 Aligned_cols=202 Identities=16% Similarity=0.170 Sum_probs=153.0
Q ss_pred cEEEeeeEEEeCCCC--ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGA--WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~--~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.+++++....++. ..++ |++||.++++||++||+||||||||||+++|+|-...+. ..+|+|++||+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~i---L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~--~~~G~ilvNG~~~~- 98 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTI---LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL--KLSGEILLNGRPRD- 98 (613)
T ss_pred eeEEEEEEEEecCCCCcccee---eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCC--cceEEEEECCccCc-
Confidence 488999999886542 2335 666999999999999999999999999999999987332 57899999996543
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh--ccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV--IRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
....++..+|+.||-..+..+ +|++.+.+.... .......+.+++++++++.+||..-
T Consensus 99 ------~~~~~~~s~yV~QdD~l~~~L----------TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~---- 158 (613)
T KOG0061|consen 99 ------SRSFRKISGYVQQDDVLLPTL----------TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC---- 158 (613)
T ss_pred ------hhhhhheeEEEcccccccccc----------cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh----
Confidence 122233456777776555444 444444443221 1223467888999999999999851
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
=+|+||-.+ ...+|||||+||+||.-| ||||+|||. |+|||++-|
T Consensus 159 ---~~t~ig~~~-----~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQP 230 (613)
T KOG0061|consen 159 ---ADTLIGNPG-----IRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQP 230 (613)
T ss_pred ---ccceecCCC-----CCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence 234444331 147999999999999998 999999984 999999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
..+.++.|+++ +|.+|+++..|+++++
T Consensus 231 ss~lf~lFD~l~-lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 231 SSELFELFDKLL-LLSEGEVVYSGSPREL 258 (613)
T ss_pred cHHHHHHHhHhh-hhcCCcEEEecCHHHH
Confidence 46888999996 4999999999998765
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=210.10 Aligned_cols=75 Identities=17% Similarity=0.124 Sum_probs=63.8
Q ss_pred HHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC---------
Q 019066 210 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--------- 269 (346)
Q Consensus 210 ~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~--------- 269 (346)
.++++.+++.+. .+++++.+|||||+||++||||| ||||++||.
T Consensus 118 ~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~ 181 (226)
T cd03270 118 LGFLVDVGLGYL----------------TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIET 181 (226)
T ss_pred HHHHHHCCCCcc----------------cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 568999999752 25889999999999999999987 999999884
Q ss_pred -------CceEEEEec-hhhhccccEEEEEe------cCCeEeecC
Q 019066 270 -------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIP 301 (346)
Q Consensus 270 -------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g 301 (346)
|.|+|+||| .....+||++++ | ++|+|+++|
T Consensus 182 l~~~~~~g~tii~itH~~~~~~~~d~i~~-l~~~~~~~~G~iv~~g 226 (226)
T cd03270 182 LKRLRDLGNTVLVVEHDEDTIRAADHVID-IGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCEEEEEEeCHHHHHhCCEEEE-eCCCccccCCEEEecC
Confidence 789999999 233468999964 9 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-27 Score=196.21 Aligned_cols=128 Identities=15% Similarity=0.201 Sum_probs=93.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+||||+|++|++++|+|+||||||||+++|+|+++ |++|.|.++|.++.. ......++.+++++++...+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-----~~~G~i~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~ 71 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-----PDSGSILINGKDISD----IDIEELRRRIGYVPQDPQLF 71 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-----ESEEEEEETTEEGTT----SHHHHHHHTEEEEESSHCHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-----ccccccccccccccc----cccccccccccccccccccc
Confidence 567999999999999999999999999999999999 999999999999862 01111233445555553333
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
..+ ++.+| ...+++.++++.+++.+.... ..++.+..||+|||
T Consensus 72 ~~~----------tv~~~--------------~~~~~~~~~l~~l~~~~~~~~-------------~~~~~~~~LS~Ge~ 114 (137)
T PF00005_consen 72 PGL----------TVREN--------------ESDERIEEVLKKLGLEDLLDR-------------KIGQRASSLSGGEK 114 (137)
T ss_dssp TTS----------BHHHH--------------HHHHHHHHHHHHTTHGGGTGS-------------BGTSCGGGSCHHHH
T ss_pred ccc----------ccccc--------------ccccccccccccccccccccc-------------ccccccchhhHHHH
Confidence 322 23222 234557778888887652100 23455599999999
Q ss_pred HHHHHHHhc---------Ccccc
Q 019066 252 YNQIVATTF---------NCPYL 265 (346)
Q Consensus 252 QRv~IArAL---------DEPts 265 (346)
||++||||| ||||+
T Consensus 115 ~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 115 QRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTSSEEEEESTTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCC
Confidence 999999999 99986
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-26 Score=245.66 Aligned_cols=196 Identities=14% Similarity=0.167 Sum_probs=160.5
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
..+.++|+++.|+.... |+++ +||.|++||+.|+.|+|||||||++++|.|... |++|++++.|.++...
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~---ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-----~t~G~a~i~g~~i~~~ 632 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRG---LSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-----PTSGEALIKGHDITVS 632 (885)
T ss_pred ceEEEcceeeeecchhh--hhcc---eEEEecCCceEEEecCCCCCchhhHHHHhCCcc-----CCcceEEEecCccccc
Confidence 56899999999987654 6555 999999999999999999999999999999999 9999999999988511
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .....++.+||++|.-.....+ ..|...++.. .++.+.....+.++++++.++|.+
T Consensus 633 ~---~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~ar------------lrG~~~~di~~~v~~ll~~~~L~~------- 690 (885)
T KOG0059|consen 633 T---DFQQVRKQLGYCPQFDALWEELTGREHLEFYAR------------LRGLPRSDIGSAIEKLLRLVGLGP------- 690 (885)
T ss_pred c---chhhhhhhcccCCchhhhhhhccHHHHHHHHHH------------HcCCChhHHHHHHHHHHHHcCChh-------
Confidence 0 1111355678888875555444 4444444332 123345677788999999999998
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
.+++....+|||+|+|+++|-|| ||||+|+|+ |+.+|+.|| ++
T Consensus 691 ----------~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE 760 (885)
T KOG0059|consen 691 ----------YANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEE 760 (885)
T ss_pred ----------hhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 56888999999999999999999 999999996 459999999 78
Q ss_pred hhccccEEEEEecCCeEeecCCccccc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
+..+|||+++ |.+|++...|+++++-
T Consensus 761 ~EaLCtR~aI-mv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 761 AEALCTRTAI-MVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHhhhhhe-eecCeeEEecChHHHH
Confidence 9999999987 9999999999998775
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-26 Score=200.73 Aligned_cols=234 Identities=13% Similarity=0.188 Sum_probs=169.8
Q ss_pred CcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+++.++|++..+... ..+.+++. +|+++.+||+-+|||+||||||-+.+.|+|..+++-- .+.-+..|++.++..
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~---v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~-vTADR~Rf~~idLL~ 77 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDR---VSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR-VTADRMRFDDIDLLR 77 (330)
T ss_pred CcccccceEEEEecCCCceEeeee---eeeeeccceeeeeeccCCCchhHHHHHHhcccccceE-EEhhhcccccchhhc
Confidence 568999999998533 34557555 9999999999999999999999999999999874321 456677888887754
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcc-hhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
....+..++..+.++++||++..-. +-..-....+.+||..- ........-.-.+.++.++|.++|+.+..
T Consensus 78 L~Pr~RRk~ig~~isMIFQeP~sCL----DPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHk---- 149 (330)
T COG4170 78 LSPRERRKLVGHNVSMIFQEPQSCL----DPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK---- 149 (330)
T ss_pred CChHHhhhhhccchhhhhcCchhhc----ChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHH----
Confidence 4334444444555666666654210 00000011122232210 00000001123457788999999997531
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech-
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG- 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~- 279 (346)
+.+.+||.+|..|+=|+|+||.|+ ||||.++++ |.||++++|+
T Consensus 150 ----------DIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl 219 (330)
T COG4170 150 ----------DIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL 219 (330)
T ss_pred ----------HHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH
Confidence 257899999999999999999999 999999764 8999999994
Q ss_pred -hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHHH
Q 019066 280 -DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDML 325 (346)
Q Consensus 280 -~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~~ 325 (346)
.+.+.||++.| |+=|+-+++++.+++++.|+|+|+..++.++...
T Consensus 220 ~~is~W~d~i~V-lYCGQ~~ESa~~e~l~~~PhHPYTqALi~a~PDF 265 (330)
T COG4170 220 QMISQWADKINV-LYCGQTVESAPSEELVTMPHHPYTQALIRAIPDF 265 (330)
T ss_pred HHHHHHhhheEE-EEecccccccchhHHhcCCCCchHHHHHHhCccc
Confidence 68899999986 9999999999999999999999999988865443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-25 Score=221.79 Aligned_cols=178 Identities=14% Similarity=0.163 Sum_probs=134.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++|+++.|+++.. + ++++||.|.+|+.+|||||||||||||+|+|+|... |.+|.|.+.- .+.
T Consensus 319 ~~vl~~~~~~~~y~~~~~--l---~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-----~~~G~v~~g~-~v~- 386 (530)
T COG0488 319 KLVLEFENVSKGYDGGRL--L---LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-----PLSGTVKVGE-TVK- 386 (530)
T ss_pred CeeEEEeccccccCCCce--e---ecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-----cCCceEEeCC-ceE-
Confidence 457999999999977643 3 677999999999999999999999999999999999 9999998743 233
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
++|..|+..... .+ .++.+.+.... ....+..++..|..+++..+.
T Consensus 387 -------------igyf~Q~~~~l~---~~------~t~~d~l~~~~-------~~~~e~~~r~~L~~f~F~~~~----- 432 (530)
T COG0488 387 -------------IGYFDQHRDELD---PD------KTVLEELSEGF-------PDGDEQEVRAYLGRFGFTGED----- 432 (530)
T ss_pred -------------EEEEEehhhhcC---cc------CcHHHHHHhhC-------ccccHHHHHHHHHHcCCChHH-----
Confidence 245555542211 00 02222222111 111267788999999998753
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhhc
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~~ 283 (346)
..+++..||||||-|+.+|+.+ ||||+.||- .-|||+||| .++.+
T Consensus 433 -----------~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 433 -----------QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred -----------HhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 4788999999999999999998 999999983 679999999 57899
Q ss_pred cccEEEEEecCCeEeec-CCcc
Q 019066 284 LTDRARIRTYLGELLGI-PPAK 304 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~-g~~~ 304 (346)
+|+++++ +.+ ++... |..+
T Consensus 502 va~~i~~-~~~-~~~~~~g~y~ 521 (530)
T COG0488 502 VATRIWL-VED-KVEEFEGGYE 521 (530)
T ss_pred hcceEEE-EcC-ceeEcCCCHH
Confidence 9999975 766 55444 4433
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-25 Score=211.69 Aligned_cols=182 Identities=14% Similarity=0.228 Sum_probs=135.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||.|.|..... - +.-||++|++||++-|+|.||||||||+++|.|+|+ |++|+|++||+++.
T Consensus 322 ~lelrnvrfay~~~~F--h---vgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-----PqsG~I~ldg~pV~--- 388 (546)
T COG4615 322 TLELRNVRFAYQDNAF--H---VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-----PQSGEILLDGKPVS--- 388 (546)
T ss_pred ceeeeeeeeccCcccc--e---ecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-----CCCCceeECCccCC---
Confidence 4999999999987654 3 444999999999999999999999999999999999 99999999999986
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
+-.+.|.|....-||.+..+|...+ ..+.....+.+..+|+++.+.+...
T Consensus 389 ------------~e~ledYR~LfSavFsDyhLF~~ll------------~~e~~as~q~i~~~LqrLel~~kts------ 438 (546)
T COG4615 389 ------------AEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGKASPQLIEKWLQRLELAHKTS------ 438 (546)
T ss_pred ------------CCCHHHHHHHHHHHhhhHhhhHhhh------------CCccCCChHHHHHHHHHHHHhhhhc------
Confidence 2345566666666777777766532 0111123455666777776655321
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc--CccccCCCC------------------------CceEEEEech-hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCPYLSFRD------------------------DKPVVVVTHG-DLL 282 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL--DEPts~Ld~------------------------g~tviiiTH~-~~~ 282 (346)
+.|. +-.+-.||-|||+|+|+--|| |.|.--+|+ |+||+.|||| ---
T Consensus 439 --l~d~----~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF 512 (546)
T COG4615 439 --LNDG----RFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF 512 (546)
T ss_pred --ccCC----cccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh
Confidence 0110 113458999999999999998 555444432 9999999994 444
Q ss_pred ccccEEEEEecCCeEeecC
Q 019066 283 SLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g 301 (346)
..|||+. .|++|++++.-
T Consensus 513 ~~ADrll-~~~~G~~~e~t 530 (546)
T COG4615 513 IHADRLL-EMRNGQLSELT 530 (546)
T ss_pred hhHHHHH-HHhcCceeecc
Confidence 5689995 59999999864
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-25 Score=194.06 Aligned_cols=185 Identities=15% Similarity=0.171 Sum_probs=142.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
++++++|+..-. |--+|.++..||++=+|||||||||||+-.++|+. |-+|+|.++|+++..
T Consensus 3 l~qln~v~~~tR----------L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~------~~sGsi~~~G~~l~~-- 64 (248)
T COG4138 3 LMQLNDVAESTR----------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGSGSIQFAGQPLEA-- 64 (248)
T ss_pred eeeecccccccc----------ccccccccccceEEEEECCCCccHHHHHHHHhCCC------CCCceEEECCcchhH--
Confidence 577888876431 44489999999999999999999999999999999 578999999999851
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
.....+.| +-.|..|.-.-...+ ||+.+.+.. +.++....+.++.+.+++.+
T Consensus 65 -~~~~eLAr-hRAYLsQqq~p~f~mpV~~YL~L~q-----------------P~~~~a~~i~~i~~~L~l~D-------- 117 (248)
T COG4138 65 -WSATELAR-HRAYLSQQQTPPFAMPVWHYLTLHQ-----------------PDKTRTELLNDVAGALALDD-------- 117 (248)
T ss_pred -HhHhHHHH-HHHHHhhccCCcchhhhhhhhhhcC-----------------chHHHHHHHHHHHhhhcccc--------
Confidence 11111211 124544443333334 555444321 22444566788899999998
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc----------------CccccCCCC----------------CceEEEE
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVV 276 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tviii 276 (346)
.+.+..++|||||-|||-+|-.. |||.++||- |.+|||.
T Consensus 118 ---------KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims 188 (248)
T COG4138 118 ---------KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMS 188 (248)
T ss_pred ---------hhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 46889999999999999999875 999999872 9999999
Q ss_pred ec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 277 TH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 277 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+| +...+.||++++ +..|+++..|..++++..
T Consensus 189 ~HDLNhTLrhA~~~wL-L~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 189 SHDLNHTLRHAHRAWL-LKRGKLLASGRREEVLTP 222 (248)
T ss_pred ccchhhHHHHHHHHHH-HhcCeEEeecchhhhcCh
Confidence 99 567788999986 999999999999998765
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-24 Score=197.36 Aligned_cols=183 Identities=17% Similarity=0.104 Sum_probs=113.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHh-----hhccCCCCCCCCc-----------eEEECceeCCCcccccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-----KVFENDKFASERA-----------QVTYNSSVGDGTYFLQEYT 155 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~-----gl~~~~~~~p~~G-----------~I~~~g~~i~~~~~~~~~~ 155 (346)
|+|||++|+.|..++|+|+||||||||++.+. +.+......|..+ -|.+|..++..+.. .
T Consensus 11 l~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~r----s 86 (261)
T cd03271 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPR----S 86 (261)
T ss_pred CCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCC----C
Confidence 77799999999999999999999999999663 2111100002222 24444444321000 0
Q ss_pred cCCCCccceeecccc----------------cccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCC
Q 019066 156 IPRGSNSFSLYDTRS----------------LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 156 ~~r~~i~~~~~d~~~----------------~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l 218 (346)
... ....++++.|. -..+..+++..... ++.+++.+-... . ..+++.++++.+||
T Consensus 87 ~~~-ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~------~-~~~~~~~~L~~vgL 158 (261)
T cd03271 87 NPA-TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI------P-KIARKLQTLCDVGL 158 (261)
T ss_pred cHH-HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh------h-hHHHHHHHHHHcCC
Confidence 000 00111222111 11122233332222 454554332110 1 12467789999999
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC----------------C
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----------------D 270 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----------------g 270 (346)
... .+++++.+|||||+||++|||+| ||||++||. |
T Consensus 159 ~~l----------------~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g 222 (261)
T cd03271 159 GYI----------------KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKG 222 (261)
T ss_pred chh----------------hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 762 25888999999999999999998 999999873 8
Q ss_pred ceEEEEec-hhhhccccEEEEEe------cCCeEeecCCc
Q 019066 271 KPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPA 303 (346)
Q Consensus 271 ~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~ 303 (346)
.|+|+||| ......||+++ .| ++|+|++.|++
T Consensus 223 ~tvIiitH~~~~i~~aD~ii-~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 223 NTVVVIEHNLDVIKCADWII-DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEEeCCHHHHHhCCEEE-EecCCcCCCCCEEEEeCCC
Confidence 99999999 23335799996 59 89999999864
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-24 Score=190.62 Aligned_cols=143 Identities=14% Similarity=0.147 Sum_probs=98.5
Q ss_pred eeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCC----CCCCCceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 93 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK----FASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 93 ~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~----~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
++++|++++| +++|+||||||||||+++|+++..+.. -.+..|++.++|+++. . ...++.+++++|++
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~v~~vfq~~ 85 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETR------K-PANFAEVTLTFDNS 85 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCC------C-CCceEEEEEEEEcC
Confidence 5599999999 999999999999999999999986110 0022345666665543 0 01123445555554
Q ss_pred cccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCH
Q 019066 169 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 248 (346)
Q Consensus 169 ~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSg 248 (346)
..+ ++.. ..+++.++++. .+ ..++.+.+|||
T Consensus 86 ~~~--------------------~~~~---------~~~~~~~~l~~---~~-----------------~~~~~~~~LS~ 116 (197)
T cd03278 86 DGR--------------------YSII---------SQGDVSEIIEA---PG-----------------KKVQRLSLLSG 116 (197)
T ss_pred CCc--------------------eeEE---------ehhhHHHHHhC---CC-----------------ccccchhhcCH
Confidence 333 0000 12355566666 22 34677899999
Q ss_pred HHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEEEEec
Q 019066 249 EKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 249 GqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
|||||++|||+| ||||++||+ +.|||+||| .....+||+++. +.
T Consensus 117 G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~-~~ 189 (197)
T cd03278 117 GEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYG-VT 189 (197)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEE-EE
Confidence 999999999973 999999884 789999999 334568999964 43
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-22 Score=198.50 Aligned_cols=196 Identities=14% Similarity=0.148 Sum_probs=148.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+.++++|++..- . ++|+||++++||+++|.|--|||+|-|+++|.|..+ +.+|+|.++|+++..
T Consensus 261 ~~~l~v~~l~~~~----~------~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-----~~~G~i~l~G~~v~~ 325 (500)
T COG1129 261 EPVLEVRNLSGGG----K------VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-----ASSGEILLDGKPVRI 325 (500)
T ss_pred CcEEEEecCCCCC----c------eeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-----CCCceEEECCEEccC
Confidence 5678999988642 1 677999999999999999999999999999999888 899999999999863
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchh-hc--c-CCChHHHHHHHHHHHHHcCCCcccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL-VI--R-RSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~-~~--~-~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
.+ ....-+..++|++.|...- +++.+ .++.+|+.++.. .. + ..+....++.+.++.+.+++...-
T Consensus 326 ~s---p~~Ai~~Gi~~v~EDRk~~-Gl~l~------~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s- 394 (500)
T COG1129 326 RS---PRDAIKAGIAYVPEDRKSE-GLVLD------MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS- 394 (500)
T ss_pred CC---HHHHHHcCCEeCCcccccC-cCcCC------CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-
Confidence 22 1112244678888886532 22111 134444444411 10 1 234455567788899999986421
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC----------------CCceEEEEec
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTH 278 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tviiiTH 278 (346)
.+....+||||-||+|.|||.| ||||.|+| +|++||+||-
T Consensus 395 ---------------~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSS 459 (500)
T COG1129 395 ---------------PEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISS 459 (500)
T ss_pred ---------------ccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3678899999999999999999 99999987 2999999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccc
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~ 305 (346)
.++..+||||+| |++|+|+..-+.++
T Consensus 460 ElpEll~~~DRIlV-m~~Gri~~e~~~~~ 487 (500)
T COG1129 460 ELPELLGLSDRILV-MREGRIVGELDREE 487 (500)
T ss_pred ChHHHHhhCCEEEE-EECCEEEEEecccc
Confidence 689999999975 99999998765544
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-23 Score=189.91 Aligned_cols=181 Identities=10% Similarity=-0.003 Sum_probs=108.9
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-CceEEECce-eCCCcccccccccCCCCccceeecccccccchh
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSS-VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS 176 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-~G~I~~~g~-~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~ 176 (346)
+.+| +++||||||||||||+++|++++. +. .|++++.+. ++.. ........+..+++++|+..... ++
T Consensus 23 ~~~~-~~~IvG~NGsGKStll~Ai~~ll~-----~~~~~~~r~~~~~~li~--~~~~~~~~~~~v~~~fq~~~~~~--~~ 92 (251)
T cd03273 23 FDPQ-FNAITGLNGSGKSNILDAICFVLG-----ITNLSTVRASNLQDLIY--KRGQAGITKASVTIVFDNSDKSQ--SP 92 (251)
T ss_pred CCCC-eEEEECCCCCCHHHHHHHHHHHhc-----ccccccccccCHHHHhh--cCCCCCCcEEEEEEEEEcCCccc--Cc
Confidence 3455 999999999999999999999998 65 468887776 3310 00011122335566676642110 00
Q ss_pred hchHhhHH-HHHhhhhcchhhccC-CChHHHHHHHHHHHHHcCCCccc---ccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 177 DNINMIKL-WIMEGVRHGELVIRR-SDSSSLRNRMRCKAHKIGCEPSV---IRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 177 qn~~~~~~-~v~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
....+.+. +|..++..+...... .......+++.++|+.+++...- .-.-+-+..++...+..+.++.+||+|||
T Consensus 93 ~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~ 172 (251)
T cd03273 93 IGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQR 172 (251)
T ss_pred ccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHH
Confidence 00000111 333333332211100 01233457888999999996210 00000111122222356788999999999
Q ss_pred HHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEE
Q 019066 252 YNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 289 (346)
Q Consensus 252 QRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~ 289 (346)
||++||||| ||||++||. |.|+|+||| ..+...||+++
T Consensus 173 qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~ 239 (251)
T cd03273 173 SLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLF 239 (251)
T ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEE
Confidence 999999965 999999873 889999999 67777899994
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-21 Score=176.88 Aligned_cols=166 Identities=11% Similarity=0.087 Sum_probs=103.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEec-CCcEEEEEcCCCCCHHHHHHHHhh-hccCCCCCCCCceEEECc-eeCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNS-SVGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~-~Ge~iaIvGpnGsGKSTLl~~L~g-l~~~~~~~p~~G~I~~~g-~~i~ 146 (346)
.|+++|+. +|.+.. +|+|+.. +|++++|+||||||||||+++|++ ++. +..+....+. .+..
T Consensus 5 ~i~l~nf~-~y~~~~---------~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-----~~~~~~~~~~~~~~~ 69 (213)
T cd03279 5 KLELKNFG-PFREEQ---------VIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-----KTPRYGRQENLRSVF 69 (213)
T ss_pred EEEEECCc-CcCCce---------EEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-----CccccccchhHHHHh
Confidence 37888888 665432 2677654 589999999999999999999995 444 4444443320 0110
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
........+++++++..... .+.... ..+.....+.+ .++..++.+
T Consensus 70 ------~~~~~~~~v~~~f~~~~~~~-~~~r~~-------------------gl~~~~~~~~~--~l~~g~l~~------ 115 (213)
T cd03279 70 ------APGEDTAEVSFTFQLGGKKY-RVERSR-------------------GLDYDQFTRIV--LLPQGEFDR------ 115 (213)
T ss_pred ------cCCCccEEEEEEEEECCeEE-EEEEec-------------------CCCHHHHHHhh--hhhhcchHH------
Confidence 00011223445555542111 111111 11111111111 233344444
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------------CccccCCCC----------------Cc
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DK 271 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------------DEPts~Ld~----------------g~ 271 (346)
++++++.+||+||+||++||||| ||||++||. +.
T Consensus 116 -----------~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~ 184 (213)
T cd03279 116 -----------FLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENR 184 (213)
T ss_pred -----------HhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 46888999999999999999854 999999873 78
Q ss_pred eEEEEec--hhhhccccEEEEEecCCe
Q 019066 272 PVVVVTH--GDLLSLTDRARIRTYLGE 296 (346)
Q Consensus 272 tviiiTH--~~~~~~aDri~v~l~~G~ 296 (346)
|+|+||| +.+..+||++.+ +++|-
T Consensus 185 tii~itH~~~~~~~~~~~i~~-~~~~~ 210 (213)
T cd03279 185 MVGVISHVEELKERIPQRLEV-IKTPG 210 (213)
T ss_pred EEEEEECchHHHHhhCcEEEE-EecCC
Confidence 9999999 568888999965 88774
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-22 Score=193.86 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=130.3
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+.|.|.+.|++|.|.++.. . +++++|-|..++.+|+|||||||||||+|+++|.+. |+.|.|.-.-...-
T Consensus 386 p~pvi~~~nv~F~y~~~~~--i---y~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-----p~~G~vs~~~H~~~ 455 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPM--I---YKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-----PTIGMVSRHSHNKL 455 (614)
T ss_pred CCCeEEEeccccCCCCcch--h---hhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-----cccccccccccccc
Confidence 4678999999999987654 3 777999999999999999999999999999999999 99998875433221
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
++ +.-+.. +... +..+..+++.-.. +.....+.+..++.++||..+.
T Consensus 456 ---------------~~--y~Qh~~-----e~ld-l~~s~le~~~~~~------~~~~~~e~~r~ilgrfgLtgd~---- 502 (614)
T KOG0927|consen 456 ---------------PR--YNQHLA-----EQLD-LDKSSLEFMMPKF------PDEKELEEMRSILGRFGLTGDA---- 502 (614)
T ss_pred ---------------hh--hhhhhH-----hhcC-cchhHHHHHHHhc------cccchHHHHHHHHHHhCCCccc----
Confidence 00 000000 0000 0012222221111 1123456788999999998643
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
...+..+||+|||.||.+|+.+ ||||++||- .-++|+||| ..+.
T Consensus 503 ------------q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~ 570 (614)
T KOG0927|consen 503 ------------QVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLIS 570 (614)
T ss_pred ------------cccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHH
Confidence 4778899999999999999998 999999982 568999999 4788
Q ss_pred ccccEEEEEecCCeEe-ecCCc
Q 019066 283 SLTDRARIRTYLGELL-GIPPA 303 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv-~~g~~ 303 (346)
+++++|++ ..+|.+. ..|+.
T Consensus 571 qVaeEi~~-c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 571 QVAEEIWV-CENGTVTKWDGDI 591 (614)
T ss_pred HHHHHhHh-hccCceeecCccH
Confidence 99999986 6666554 34543
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-21 Score=178.82 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=45.1
Q ss_pred cccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEE
Q 019066 239 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRAR 289 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~ 289 (346)
.+.++.+||||||||++||||| ||||++||+ +.++|++|| ..+.++||+++
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~ 231 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFY 231 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEE
Confidence 4677899999999999999976 999999884 678888888 67788999996
Q ss_pred E
Q 019066 290 I 290 (346)
Q Consensus 290 v 290 (346)
+
T Consensus 232 ~ 232 (243)
T cd03272 232 G 232 (243)
T ss_pred E
Confidence 5
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-21 Score=197.74 Aligned_cols=169 Identities=16% Similarity=0.164 Sum_probs=126.4
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
...|.++||+..-+++... |++.||+|++||.+.|.||||||||||+|+|+|+.+ .-+|+|.+-...
T Consensus 390 ~~~i~~~nl~l~~p~~~~l-----l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-----~g~G~I~~P~~~--- 456 (604)
T COG4178 390 DHGITLENLSLRTPDGQTL-----LSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-----WGSGRISMPADS--- 456 (604)
T ss_pred cceeEEeeeeEECCCCCee-----eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-----cCCCceecCCCC---
Confidence 4679999999999887653 777999999999999999999999999999999999 777887654110
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.+-|.+| .+.+...+.++.++++.... ...++.+.++|.++||.+...++
T Consensus 457 ------------~~lflpQ-----------~PY~p~GtLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~rl-- 506 (604)
T COG4178 457 ------------ALLFLPQ-----------RPYLPQGTLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAERL-- 506 (604)
T ss_pred ------------ceEEecC-----------CCCCCCccHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHHH--
Confidence 0114444 34444445666666654321 13456788899999998744221
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 282 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~ 282 (346)
++. ++=...||+|||||+++||.| ||.|++||+ +.|+|-|+| ..+.
T Consensus 507 ------~~~---~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~ 577 (604)
T COG4178 507 ------DEE---DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLW 577 (604)
T ss_pred ------hcc---CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhH
Confidence 111 233458999999999999998 999999984 899999999 5666
Q ss_pred ccccEE
Q 019066 283 SLTDRA 288 (346)
Q Consensus 283 ~~aDri 288 (346)
.+.++.
T Consensus 578 ~~h~~~ 583 (604)
T COG4178 578 NFHSRQ 583 (604)
T ss_pred HHHhhh
Confidence 666666
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-21 Score=186.21 Aligned_cols=204 Identities=16% Similarity=0.171 Sum_probs=154.5
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC-
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG- 145 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i- 145 (346)
..+.|++++|+..-..+. .+ +++|||+|++||++||.|-.|-|-+-|+.+|+|+.+ +.+|+|.++|+++
T Consensus 254 g~~vL~V~~L~v~~~~~~--~~---v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-----~~~G~I~l~G~~v~ 323 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGV--TA---VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-----PASGRILLNGKDVL 323 (501)
T ss_pred CCeEEEEeeeEeecCCCC--ce---eeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-----cCCceEEECCEecc
Confidence 356899999999765442 24 666999999999999999999999999999999998 8889999999997
Q ss_pred CCcccccccccCCCCccceeeccccc---ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSL---SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~---~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
... ......+..++|+|.|.... ..+ +.+|..+..... -+...++..+.....+.+.++++.+++...
T Consensus 324 ~~~---~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~-----~~~~~~g~l~~~~i~~~a~~li~~fdVr~~ 395 (501)
T COG3845 324 GRL---SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDK-----KPFSRGGFLDRRAIRKFARELIEEFDVRAP 395 (501)
T ss_pred ccC---CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccc-----cccccccccCHHHHHHHHHHHHHHcCccCC
Confidence 211 12233355778999886443 122 344443322100 001122234557788889999999988631
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEE
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVV 276 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviii 276 (346)
-...+...||||.+||+.+||-| .+||-|||- |++|++|
T Consensus 396 ----------------~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLi 459 (501)
T COG3845 396 ----------------SPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLI 459 (501)
T ss_pred ----------------CCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 13566789999999999999999 899999982 9999999
Q ss_pred ec--hhhhccccEEEEEecCCeEeecCCccc
Q 019066 277 TH--GDLLSLTDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 277 TH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 305 (346)
|- +++..+||||+| |++|+|+...++++
T Consensus 460 S~dLDEil~lsDrIaV-i~~Gri~~~~~~~~ 489 (501)
T COG3845 460 SEDLDEILELSDRIAV-IYEGRIVGIVPPEE 489 (501)
T ss_pred ehhHHHHHHhhheeee-eeCCceeccccccc
Confidence 99 789999999986 99999999887764
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-21 Score=188.99 Aligned_cols=188 Identities=16% Similarity=0.085 Sum_probs=139.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+..|++++|++.-+....+ . .+|.||+|+.|+.+.|.||||||||+|+|.|.|+.+ -.+|.+..-.....
T Consensus 431 Dn~i~~e~v~l~tPt~g~~-l---ie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-----~~~G~l~k~~~~~~- 500 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDL-L---IENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-----STGGKLTKPTDGGP- 500 (659)
T ss_pred cceEEeeeeeecCCCCCce-e---eeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-----cCCCeEEecccCCC-
Confidence 4579999999998773322 3 566999999999999999999999999999999998 88998875432210
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+.+-|++|.+ .+...+.++.+.++........+...++++.+.|+.++|.+ +.+...
T Consensus 501 -----------~~lfflPQrP-----------Ymt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~h-l~~r~g 557 (659)
T KOG0060|consen 501 -----------KDLFFLPQRP-----------YMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGH-LLEREG 557 (659)
T ss_pred -----------CceEEecCCC-----------CccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhh-HHHHhC
Confidence 1122455544 33334666666666432222223344677888899998876 456667
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec-hhhhcc
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH-GDLLSL 284 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH-~~~~~~ 284 (346)
|++..|+-. . ...||+||+||+++||.+ ||-||+++. |+|.|-|.| ..+.++
T Consensus 558 gld~~~~~d-W----~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 558 GLDQQVDWD-W----MDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred CCCchhhcc-H----HhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 888666654 3 458999999999999998 999999873 999999999 678888
Q ss_pred ccEEEEEecC
Q 019066 285 TDRARIRTYL 294 (346)
Q Consensus 285 aDri~v~l~~ 294 (346)
-|.++ .|+.
T Consensus 633 Hd~~L-~~~g 641 (659)
T KOG0060|consen 633 HDYVL-RMDG 641 (659)
T ss_pred hhEEE-EecC
Confidence 88885 3643
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-20 Score=196.84 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=78.7
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~------ 269 (346)
+..++++.+||... .+++.+.+|||||+||+.||++| ||||++||.
T Consensus 809 ~~l~~L~~vgL~~l----------------~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L 872 (943)
T PRK00349 809 RKLQTLVDVGLGYI----------------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKL 872 (943)
T ss_pred HHHHHHHHCCCCcc----------------cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHH
Confidence 34677888999752 25788999999999999999998 999999873
Q ss_pred ----------CceEEEEec-hhhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 019066 270 ----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 270 ----------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|.|||+||| ......||+++ .| ++|+|++.|++++++.++. ++|..++.
T Consensus 873 ~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii-~Lgp~~G~~~G~Iv~~Gt~~el~~~~~-s~t~~~l~ 938 (943)
T PRK00349 873 LEVLHRLVDKGNTVVVIEHNLDVIKTADWII-DLGPEGGDGGGEIVATGTPEEVAKVEA-SYTGRYLK 938 (943)
T ss_pred HHHHHHHHhCCCEEEEEecCHHHHHhCCEEE-EecCCcCCCCCEEEEeCCHHHHHhCcc-cHHHHHHH
Confidence 899999999 33335799996 49 7999999999999998776 56777764
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-20 Score=186.82 Aligned_cols=203 Identities=13% Similarity=0.093 Sum_probs=130.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE--CceeCCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~--~g~~i~~ 147 (346)
-+.+.|+++.|.+... ++|+.|++.+|+.+||+|+|||||||+|++|.|-.. |..-++.+ -.+++.
T Consensus 75 dvk~~sls~s~~g~~l------~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~-----P~p~~~d~y~ls~e~~- 142 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVEL------IKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV-----PIPEHIDFYLLSREIE- 142 (614)
T ss_pred cceeeeeeeccCCcee------eeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC-----CCCcccchhhhcccCC-
Confidence 3899999999977543 788999999999999999999999999999999887 54443322 222211
Q ss_pred cccccccccCCCCcccee----ecccccccchhhchHhh-HHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccc
Q 019066 148 TYFLQEYTIPRGSNSFSL----YDTRSLSDDASDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSV 222 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~----~d~~~~~~~v~qn~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 222 (346)
+.. .+.+..++ .....+..+ .++.... ...-.+.+..-.......+.+..+.++..+|.-+|..+..
T Consensus 143 ---ps~----~~av~~v~~~~~~e~~rle~~-~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 143 ---PSE----KQAVQAVVMETDHERKRLEYL-AEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred ---Cch----HHHHHHHhhhhHHHHHHHHHH-HHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 000 00001111 000001000 0110000 0000000000001111223345567778888888887643
Q ss_pred ccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------Cc-eEEEEec-
Q 019066 223 IRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DK-PVVVVTH- 278 (346)
Q Consensus 223 ~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~-tviiiTH- 278 (346)
.++....||||+|.|+++|||| ||||++||. .. ++++++|
T Consensus 215 ----------------~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~ 278 (614)
T KOG0927|consen 215 ----------------QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHS 278 (614)
T ss_pred ----------------HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecc
Confidence 5788889999999999999999 999999983 45 8999999
Q ss_pred -hhhhccccEEEEEecCCe-EeecCCccccccC
Q 019066 279 -GDLLSLTDRARIRTYLGE-LLGIPPAKQIFDI 309 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~-iv~~g~~~~l~~~ 309 (346)
+.+-.+|..|+ .|+.++ +...|+-++....
T Consensus 279 QDfln~vCT~Ii-~l~~kkl~~y~Gnydqy~~t 310 (614)
T KOG0927|consen 279 QDFLNGVCTNII-HLDNKKLIYYEGNYDQYVKT 310 (614)
T ss_pred hhhhhhHhhhhh-eecccceeeecCCHHHHhhH
Confidence 78889999995 599999 5667777665443
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-21 Score=178.37 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=47.6
Q ss_pred hcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEE
Q 019066 238 VLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRA 288 (346)
Q Consensus 238 ~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri 288 (346)
..++++..||+|||||++||||+ ||||++||+ +.|+|++|| +.+.++|||+
T Consensus 120 ~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v 199 (212)
T cd03274 120 KSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRL 199 (212)
T ss_pred ccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEE
Confidence 35777889999999999999854 999999984 679999999 7788999999
Q ss_pred EEEecC
Q 019066 289 RIRTYL 294 (346)
Q Consensus 289 ~v~l~~ 294 (346)
++ |..
T Consensus 200 ~~-~~~ 204 (212)
T cd03274 200 VG-IYK 204 (212)
T ss_pred EE-EEe
Confidence 64 643
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=201.60 Aligned_cols=105 Identities=13% Similarity=0.079 Sum_probs=80.6
Q ss_pred HHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc--
Q 019066 185 WIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-- 260 (346)
Q Consensus 185 ~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-- 260 (346)
+|.+++.++.... .........+++ ++++.+||... .+++.+.+|||||+||++|||||
T Consensus 764 tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l----------------~l~q~~~tLSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 764 NIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYL----------------PLGRPLSSLSGGEIQRLKLAYELLA 826 (1809)
T ss_pred CHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcch----------------hhcCccccCCHHHHHHHHHHHHHhh
Confidence 5566665553311 111234455566 58899999762 15888999999999999999998
Q ss_pred ----------CccccCCCC----------------CceEEEEec--hhhhccccEEEEEec------CCeEeecCCcccc
Q 019066 261 ----------NCPYLSFRD----------------DKPVVVVTH--GDLLSLTDRARIRTY------LGELLGIPPAKQI 306 (346)
Q Consensus 261 ----------DEPts~Ld~----------------g~tviiiTH--~~~~~~aDri~v~l~------~G~iv~~g~~~~l 306 (346)
||||++||. |.|||+||| +.+ ++||++++ |. .|++++.|+++++
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~-L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLE-LGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEE-EccCCCCCCCEEEEeCCHHHH
Confidence 999999873 899999999 455 78999964 95 7999999999998
Q ss_pred cc
Q 019066 307 FD 308 (346)
Q Consensus 307 ~~ 308 (346)
+.
T Consensus 905 ~~ 906 (1809)
T PRK00635 905 IH 906 (1809)
T ss_pred Hh
Confidence 75
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-20 Score=169.45 Aligned_cols=195 Identities=13% Similarity=0.014 Sum_probs=106.4
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee-C-CCc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-G-DGT 148 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~-i-~~~ 148 (346)
|+++|. ++|.+. .+|+..++ +++|+||||||||||+.+|.+++. +..|++...+.+ + ...
T Consensus 4 i~l~nf-~~~~~~-----------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~-----~~~~~~r~~~~~~~i~~~ 65 (247)
T cd03275 4 LELENF-KSYKGR-----------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLG-----EKSSHLRSKNLKDLIYRA 65 (247)
T ss_pred EEEECc-cccCCC-----------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhC-----CCcccccccchhhhcccC
Confidence 667775 556431 23333455 999999999999999999999998 777777654321 1 100
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc--cc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR--KV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~ 226 (346)
..... ......+...++..... ..+.. ..+.++.. .... .......+.+.++++.+|+..+... .+
T Consensus 66 ~~~~~-~~~~~~v~~~f~~~~~~-~~~~~------~~~~~~~~-~~~i---ngk~~s~~~~~~~l~~~gi~~~~~~~~i~ 133 (247)
T cd03275 66 RVGKP-DSNSAYVTAVYEDDDGE-EKTFR------RIITGGSS-SYRI---NGKVVSLKEYNEELEKINILVKARNFLVF 133 (247)
T ss_pred ccccC-CCceEEEEEEEEcCCCc-EEEEE------EEEECCce-EEEE---CCEEecHHHHHHHHHHhCCCCCCCeEEEE
Confidence 00000 00000111112110000 00000 00000000 0000 0112223456688888998753211 12
Q ss_pred ceeeeeechh---hhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC----------------CceEE
Q 019066 227 NFVIFVVDGL---AVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVV 274 (346)
Q Consensus 227 ~~~~~~v~e~---~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tvi 274 (346)
+|-.+.+-+. ...++++.+||+|||||++||||+ ||||++||. |.++|
T Consensus 134 Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi 213 (247)
T cd03275 134 QGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFI 213 (247)
T ss_pred CCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEE
Confidence 2222222111 122344589999999999999976 999999873 78999
Q ss_pred EEec-hhhhccccEEEEEecCC
Q 019066 275 VVTH-GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 275 iiTH-~~~~~~aDri~v~l~~G 295 (346)
+||| ..+...||+++++.+++
T Consensus 214 ~isH~~~~~~~~d~i~~~~~~~ 235 (247)
T cd03275 214 VISLKEEFFSKADALVGVYRDQ 235 (247)
T ss_pred EEECCHHHHhhCCeEEEEEecC
Confidence 9999 55667899997644444
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.78 E-value=9e-19 Score=158.16 Aligned_cols=142 Identities=15% Similarity=0.232 Sum_probs=91.3
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHh----hhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccc
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS----KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 170 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~----gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~ 170 (346)
.++++.+| +++|+||||||||||+++|. |... |+.|.+..+...+.. ...+..+++++++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-----~~~~~~~~~~~~i~~-------~~~~~~v~~~f~~~~- 81 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-----PNSKGGAHDPKLIRE-------GEVRAQVKLAFENAN- 81 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-----cccccccchHHHHhC-------CCCcEEEEEEEEeCC-
Confidence 45667777 99999999999999999995 6666 777766522222210 111224456666542
Q ss_pred cccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 171 LSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 171 ~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
...+ +.... ++.+|+.+.. ++++.+. +++.+..||+|
T Consensus 82 ~~~~~v~r~~-----~~~~~~~~~~-----------~~~~~~~--------------------------~~~~~~~LS~G 119 (204)
T cd03240 82 GKKYTITRSL-----AILENVIFCH-----------QGESNWP--------------------------LLDMRGRCSGG 119 (204)
T ss_pred CCEEEEEEEh-----hHhhceeeec-----------hHHHHHH--------------------------HhcCccccCcc
Confidence 1111 22221 5556664321 1112221 24567899999
Q ss_pred HHHH------HHHHHhc---------CccccCCCC------------------CceEEEEec-hhhhccccEEEEEec
Q 019066 250 KQYN------QIVATTF---------NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 250 qrQR------v~IArAL---------DEPts~Ld~------------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
|+|| ++||||+ |||+++||+ +.|+|++|| ......||++++ |+
T Consensus 120 ~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~-l~ 196 (204)
T cd03240 120 EKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYR-VE 196 (204)
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEE-Ee
Confidence 9996 6888888 999999873 569999999 444567999975 53
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-18 Score=184.64 Aligned_cols=82 Identities=15% Similarity=0.101 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD------ 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~------ 269 (346)
+..++++.+||... .+++++.+|||||+||++||++| ||||++||.
T Consensus 807 ~~l~~L~~~gL~~l----------------~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L 870 (924)
T TIGR00630 807 RKLQTLCDVGLGYI----------------KLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKL 870 (924)
T ss_pred HHHHHHHHcCCCch----------------hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHH
Confidence 34567788888642 25788999999999999999998 999999873
Q ss_pred ----------CceEEEEec-hhhhccccEEEEEe------cCCeEeecCCcccc
Q 019066 270 ----------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQI 306 (346)
Q Consensus 270 ----------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l 306 (346)
|.|+|+||| ......||+++ +| ++|+|++.|+++++
T Consensus 871 ~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii-~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 871 LEVLQRLVDQGNTVVVIEHNLDVIKTADYII-DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE-EecCCccCCCCEEEEeCCHHHh
Confidence 899999999 33335699996 49 79999999998765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-19 Score=190.26 Aligned_cols=179 Identities=11% Similarity=0.100 Sum_probs=131.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+||+=-++||-.+||+|+|||||||||++|+|=...+ ..+|+|+++|.+.. +..+ +|..||+-|+-...
T Consensus 807 L~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G---~I~Gdi~i~G~p~~------q~tF-~R~~GYvqQ~DiH~ 876 (1391)
T KOG0065|consen 807 LNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG---YIEGDILISGFPKD------QETF-ARVSGYVEQQDIHS 876 (1391)
T ss_pred hhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc---eEEeEEEECCeeCc------hhhh-ccccceeecccccC
Confidence 66699999999999999999999999999999965422 46799999998875 2222 33456665543322
Q ss_pred ccchhhchHhhHHHHHhhhhcchh--hccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGEL--VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
.. .+|++-+.+... .....+.++..+.++++++.++|++-. +.+||.. +..||..
T Consensus 877 ~~----------~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~------G~GLs~e 933 (1391)
T KOG0065|consen 877 PE----------LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLP------GSGLSTE 933 (1391)
T ss_pred cc----------cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCC------CCCCCHH
Confidence 22 255555555432 222334455668899999999998622 2334433 3469999
Q ss_pred HHHHHHHHHhc----------CccccCCCC----------------CceEEEEec---hhhhccccEEEEEe-cCCeEee
Q 019066 250 KQYNQIVATTF----------NCPYLSFRD----------------DKPVVVVTH---GDLLSLTDRARIRT-YLGELLG 299 (346)
Q Consensus 250 qrQRv~IArAL----------DEPts~Ld~----------------g~tviiiTH---~~~~~~aDri~v~l-~~G~iv~ 299 (346)
||+|+.||--| ||||||||. |.||+..-| ..+.+..|++++ | +.|+.|.
T Consensus 934 QRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLL-LkrGGqtVY 1012 (1391)
T KOG0065|consen 934 QRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLL-LKRGGQTVY 1012 (1391)
T ss_pred HhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHH-HhcCCeEEE
Confidence 99999999877 999999984 999999999 356777899965 6 4688998
Q ss_pred cCCcc
Q 019066 300 IPPAK 304 (346)
Q Consensus 300 ~g~~~ 304 (346)
.|+..
T Consensus 1013 ~G~lG 1017 (1391)
T KOG0065|consen 1013 FGPLG 1017 (1391)
T ss_pred ecCcc
Confidence 88754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-18 Score=168.86 Aligned_cols=137 Identities=15% Similarity=0.174 Sum_probs=97.6
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccc-cccchh
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS-LSDDAS 176 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~-~~~~v~ 176 (346)
+|..||+++++||||-|||||+++|+|.++ |++|. ..+++. +|-+|-... +.+.|.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ik-----Pdeg~----~~~~~v--------------SyKPQyI~~~~~gtV~ 419 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIK-----PDEGS----EEDLKV--------------SYKPQYISPDYDGTVE 419 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhcccc-----CCCCC----CccceE--------------eecceeecCCCCCcHH
Confidence 456678999999999999999999999999 99997 333321 344443321 334454
Q ss_pred hchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHH
Q 019066 177 DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 256 (346)
Q Consensus 177 qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~I 256 (346)
|-+...... . + ... -.-.++++-++|++ .++++..+|||||.|||+|
T Consensus 420 ~~l~~~~~~---~--~--------~~s---~~~~ei~~pl~l~~-----------------i~e~~v~~LSGGELQRvaI 466 (591)
T COG1245 420 DLLRSAIRS---A--F--------GSS---YFKTEIVKPLNLED-----------------LLERPVDELSGGELQRVAI 466 (591)
T ss_pred HHHHHhhhh---h--c--------ccc---hhHHhhcCccchHH-----------------HHhcccccCCchhHHHHHH
Confidence 432211100 0 0 001 11234667778877 6789999999999999999
Q ss_pred HHhc---------CccccCCCC-----------------CceEEEEech--hhhccccEEEE
Q 019066 257 ATTF---------NCPYLSFRD-----------------DKPVVVVTHG--DLLSLTDRARI 290 (346)
Q Consensus 257 ArAL---------DEPts~Ld~-----------------g~tviiiTH~--~~~~~aDri~v 290 (346)
|.|| |||.+.||- ++|.++|.|+ .+-.++||++|
T Consensus 467 aa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~iv 528 (591)
T COG1245 467 AAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIV 528 (591)
T ss_pred HHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEE
Confidence 9999 999999983 8999999995 45678999954
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-18 Score=169.30 Aligned_cols=177 Identities=14% Similarity=0.116 Sum_probs=131.7
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..|.+++.+|+|.|..+.. .. +.+++++++--..++++|+||+||||+++++.+-.. |.+|-+.+.+.
T Consensus 359 ~~p~l~i~~V~f~y~p~~y-~~---~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-----~~rgi~~~~~r--- 426 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEY-QW---RKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-----PTRGIVGRHPR--- 426 (582)
T ss_pred CCCeeEEEeeeccCCCcch-hh---hhccCCccchhhhhheeccCchhHHHHHHHHhccCC-----cccceeeeccc---
Confidence 3568999999999987762 13 677999999999999999999999999999999888 89998876542
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
.++++..|-...+... .. ...+-. .... +...++.+++.+..+||+.++
T Consensus 427 ------------~ri~~f~Qhhvd~l~~-------~v-~~vd~~---~~~~----pG~~~ee~r~hl~~~Gl~g~l---- 475 (582)
T KOG0062|consen 427 ------------LRIKYFAQHHVDFLDK-------NV-NAVDFM---EKSF----PGKTEEEIRRHLGSFGLSGEL---- 475 (582)
T ss_pred ------------ceecchhHhhhhHHHH-------Hh-HHHHHH---HHhC----CCCCHHHHHHHHHhcCCCchh----
Confidence 1233433322221110 00 000000 0000 112467788899999999865
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
.......||||||=||++|... ||||..||. +-.||+||| +++.
T Consensus 476 ------------a~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 476 ------------ALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFIS 543 (582)
T ss_pred ------------hhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHh
Confidence 3455789999999999999986 999999984 567999999 5789
Q ss_pred ccccEEEEEecCCeEee
Q 019066 283 SLTDRARIRTYLGELLG 299 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~ 299 (346)
.+|+.+++ .++|++..
T Consensus 544 ~~c~E~Wv-ve~g~vt~ 559 (582)
T KOG0062|consen 544 SLCKELWV-VEDGKVTP 559 (582)
T ss_pred hcCceeEE-EcCCcEEe
Confidence 99999996 99999876
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-18 Score=148.58 Aligned_cols=193 Identities=13% Similarity=0.055 Sum_probs=128.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
...|++.++.|+|....+. +-|+|++++.|....+||.||||||||+++|+|-.- .-.|.|.+.|.+--.
T Consensus 11 ~~aievsgl~f~y~~~dP~-----~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-----v~~~~v~VlgrsaFh 80 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPI-----FFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-----VGGGVVQVLGRSAFH 80 (291)
T ss_pred cceEEEeccEEecccCCce-----EEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-----ccCCeEEEcCcCccc
Confidence 4469999999999877764 777999999999999999999999999999999766 666999999976421
Q ss_pred cccccccccC-CCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIP-RGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~-r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
...+. -....|.--+.....+...+-+.-...++ +.+.++.. . ...++.+++.+.+.++-
T Consensus 81 -----Dt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~---g----~dp~Rre~LI~iLDIdl------ 141 (291)
T KOG2355|consen 81 -----DTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVG---G----DDPERREKLIDILDIDL------ 141 (291)
T ss_pred -----cccccccCceeEecccccccccccccccccccccH-HHHHhhcc---C----CChhHhhhhhhheeccc------
Confidence 00000 00111111111111111111110000011 11111111 1 11145556677776653
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
.-+.+.+|.|||+||.|+..| ||-|--||- |.||++.||
T Consensus 142 -------------~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF 208 (291)
T KOG2355|consen 142 -------------RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF 208 (291)
T ss_pred -------------eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec
Confidence 334678999999999999998 999988762 999999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCc
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
+-+...+.++++ +..|+++..-+-
T Consensus 209 DGLe~Wpthl~y-i~~Gkl~~~l~~ 232 (291)
T KOG2355|consen 209 DGLETWPTHLVY-IKSGKLVDNLKY 232 (291)
T ss_pred cchhhcchhEEE-ecCCeeeecccc
Confidence 778889999965 999999985443
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-18 Score=169.53 Aligned_cols=174 Identities=12% Similarity=0.054 Sum_probs=116.9
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|.++|+-.--+.+.. + ....+|+|++|-.+.|+||||||||+|+|+|.|+.+ ...|...+--
T Consensus 482 I~lenIpvItP~~~v--v---v~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-----vy~g~L~~P~-------- 543 (728)
T KOG0064|consen 482 IILENIPVITPAGDV--L---VPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-----VYNGLLSIPR-------- 543 (728)
T ss_pred eEEecCceeccCcce--e---ecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-----ccCCeeecCC--------
Confidence 778888887777665 3 555999999999999999999999999999999998 6555443210
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
...+-|.||. |.+...+.+|.|.++-.......+.-.++....+|+.+.|+. +.....|++
T Consensus 544 -------~~~mFYIPQR-----------PYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~d 604 (728)
T KOG0064|consen 544 -------PNNIFYIPQR-----------PYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGGWD 604 (728)
T ss_pred -------CcceEeccCC-----------CccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccChh
Confidence 1122344444 444333455555554321111111223455667788888774 334445555
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC-------------CCceEEEEec-hhhhccccE
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR-------------DDKPVVVVTH-GDLLSLTDR 287 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld-------------~g~tviiiTH-~~~~~~aDr 287 (346)
-+.|=. ..||||+|||+++||.+ ||-||+.. .|.+.|-||| ..+-++-..
T Consensus 605 a~~dWk-------d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h~~ 677 (728)
T KOG0064|consen 605 AVRDWK-------DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYHTH 677 (728)
T ss_pred hhccHH-------hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHHHHHHH
Confidence 555544 36999999999999998 99999953 3999999999 455554444
Q ss_pred E
Q 019066 288 A 288 (346)
Q Consensus 288 i 288 (346)
+
T Consensus 678 l 678 (728)
T KOG0064|consen 678 L 678 (728)
T ss_pred H
Confidence 4
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-18 Score=167.53 Aligned_cols=182 Identities=13% Similarity=0.078 Sum_probs=115.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
-|.+.+++..|+++.. |.+-++++..|-.+||+|+||+|||||+|+|+.-.-.. + |++-++. |.++.
T Consensus 80 Di~~~~fdLa~G~k~L------L~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~-f-~veqE~~--g~~t~--- 146 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKIL------LNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSG-F-HVEQEVR--GDDTE--- 146 (582)
T ss_pred ceeeeeeeeeecchhh------hcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCc-c-Cchhhee--ccchH---
Confidence 3888999999987543 77799999999999999999999999999998711000 0 2222221 11110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
..++ ......++.+-+........ .-..++...++|.-+|..++.
T Consensus 147 --------------~~~~-----------~l~~D~~~~dfl~~e~~l~~---~~~l~ei~~~~L~glGFt~em------- 191 (582)
T KOG0062|consen 147 --------------ALQS-----------VLESDTERLDFLAEEKELLA---GLTLEEIYDKILAGLGFTPEM------- 191 (582)
T ss_pred --------------HHhh-----------hhhccHHHHHHHHhhhhhhc---cchHHHHHHHHHHhCCCCHHH-------
Confidence 0000 00000011111111100000 002223333489999998864
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhhccc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSLT 285 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~~~a 285 (346)
..++..+||||-|-|+++|||| ||||..||- +.|+|+||| .++-..|
T Consensus 192 ---------q~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~ 262 (582)
T KOG0062|consen 192 ---------QLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVC 262 (582)
T ss_pred ---------HhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHH
Confidence 5788899999999999999999 999999983 789999999 4677788
Q ss_pred cEEEEEecCCeEe-ecCCccccccC
Q 019066 286 DRARIRTYLGELL-GIPPAKQIFDI 309 (346)
Q Consensus 286 Dri~v~l~~G~iv-~~g~~~~l~~~ 309 (346)
..|+ .+++-++- ..|+-+++...
T Consensus 263 tdII-H~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 263 TDII-HLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHH-HHhhhhhhhhcCcHHHHHHh
Confidence 8884 36654442 34666555443
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=149.47 Aligned_cols=146 Identities=10% Similarity=0.037 Sum_probs=89.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
++++++++.+| +.+|+||||||||||+.+|.-.+. .... ....|..+.. .. ........+..
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-----~~~~-~~~r~~~~~~--~i-~~~~~~~~i~~-------- 73 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-----GKAS-DTNRGSSLKD--LI-KDGESSAKITV-------- 73 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-----CCcc-cccccccHHH--Hh-hCCCCeEEEEE--------
Confidence 55588888888 889999999999999999975554 2211 1111221110 00 00000001112
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
.+++..+.. | ......++++.++++. .+ ..++++.+||+|||
T Consensus 74 ---~~~~~~~~~-----~----------~~~~~~~~~~~~~l~~---~~-----------------~~~~~~~~lS~G~k 115 (198)
T cd03276 74 ---TLKNQGLDA-----N----------PLCVLSQDMARSFLTS---NK-----------------AAVRDVKTLSGGER 115 (198)
T ss_pred ---EEEcCCccC-----C----------cCCHHHHHHHHHHhcc---cc-----------------ccCCcccccChhHH
Confidence 222221111 0 0012224566677766 33 34778999999999
Q ss_pred HHHHHHHhc-------------CccccCCCC------------------C-ceEEEEec--hhhhccccEEEEEecCC
Q 019066 252 YNQIVATTF-------------NCPYLSFRD------------------D-KPVVVVTH--GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 252 QRv~IArAL-------------DEPts~Ld~------------------g-~tviiiTH--~~~~~~aDri~v~l~~G 295 (346)
||++||+|| ||||++||. + .|+|++|| +.+.++ |+|.| |..+
T Consensus 116 ~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~-~~~~ 191 (198)
T cd03276 116 SFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKV-FRMK 191 (198)
T ss_pred HHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeE-EEec
Confidence 999999875 999999873 2 48999999 567664 99976 8764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-17 Score=176.74 Aligned_cols=204 Identities=12% Similarity=0.137 Sum_probs=151.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+|.-+++|+.+.++||.|||||||+++|+|-.+..- -..|+|.+||.+.+. ... ++.+.|..|.-..+
T Consensus 131 l~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~--~~~~~isy~G~~~~e------~~~-~~~~aY~~e~DvH~ 201 (1391)
T KOG0065|consen 131 LKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFL--KSSGEITYNGHDLKE------FVP-KKTVAYNSEQDVHF 201 (1391)
T ss_pred ecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccc--cCCCceeECCCcccc------ccc-CceEEecccccccc
Confidence 666999999999999999999999999999999887443 335799999998762 111 34556777766666
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhccCCChHH-HHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSS-LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
..+ |+|-+.+....- +.. .+ .....+.+ .....+.+++.+||+. +.||+||-. .....|||
T Consensus 202 p~lTVreTldFa~rck--~~~--~r-~~~~~R~e~~~~~~d~~lkilGL~~-------~~dT~VGnd-----~~RGvSGG 264 (1391)
T KOG0065|consen 202 PELTVRETLDFAARCK--GPG--SR-YDEVSRREKLAAMTDYLLKILGLDH-------CADTLVGND-----MVRGVSGG 264 (1391)
T ss_pred ceeEEeehhhHHHhcc--CCc--cc-cccccHHHHHHHHHHHHHHHhCchh-------hccceeccc-----ccccccCc
Confidence 666 777776554310 000 00 00011111 1225678899999976 678999955 46799999
Q ss_pred HHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec---hhhhccccEEEEEecCCeEeec
Q 019066 250 KQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH---GDLLSLTDRARIRTYLGELLGI 300 (346)
Q Consensus 250 qrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH---~~~~~~aDri~v~l~~G~iv~~ 300 (346)
||+||++|.++ ||+|.|||. +.|.++.-| +++.++-|.|.+ |.+|+++..
T Consensus 265 erKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~l-L~eG~~iy~ 343 (1391)
T KOG0065|consen 265 ERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVIL-LSEGYQIYQ 343 (1391)
T ss_pred ccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheee-eeccceEEe
Confidence 99999999998 999999994 788888877 678889999975 999999999
Q ss_pred CCcccccc--------CCCCCChHHHHHHH
Q 019066 301 PPAKQIFD--------IPESSDPENELIIV 322 (346)
Q Consensus 301 g~~~~l~~--------~~~~~~~~~~~~~~ 322 (346)
|+.++++. .|...-+..++..+
T Consensus 344 Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~v 373 (1391)
T KOG0065|consen 344 GPRDEVLPYFEDMGFKCPPRKGTADFLTEV 373 (1391)
T ss_pred ccHHHHHHHHHhcCccCCCccCHHHHHHHh
Confidence 99887743 35666666666654
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=154.91 Aligned_cols=159 Identities=11% Similarity=0.112 Sum_probs=109.0
Q ss_pred CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 67 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..|+|-+.+|+|.|++..+. +++++|-|.--..+|||||||.||||||++|.|-+. |+.|+.+-+- .+.
T Consensus 583 ~PPvLGlH~VtFgy~gqkpL-----FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-----P~~GE~RKnh-rL~ 651 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKPL-----FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-----PNDGELRKNH-RLR 651 (807)
T ss_pred CCCeeecccccccCCCCCch-----hhcccccccccceeEEECCCCccHHHHHHHHhcCCC-----CCcchhhccc-eee
Confidence 45789999999999877653 677999999999999999999999999999999999 9999876432 221
Q ss_pred CcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
+||--|... ..+ ..+.+.-+.... | .. ..+.++..|..+||....
T Consensus 652 --------------iG~FdQh~~--E~L~~Eetp~EyLqr~-----F------Nl----pyq~ARK~LG~fGL~sHA--- 697 (807)
T KOG0066|consen 652 --------------IGWFDQHAN--EALNGEETPVEYLQRK-----F------NL----PYQEARKQLGTFGLASHA--- 697 (807)
T ss_pred --------------eechhhhhH--HhhccccCHHHHHHHh-----c------CC----ChHHHHHHhhhhhhhhcc---
Confidence 222211110 011 111111111000 0 11 124566788899997632
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHh-c--------CccccCCCC-------------CceEEEEec--hhh
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT-F--------NCPYLSFRD-------------DKPVVVVTH--GDL 281 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArA-L--------DEPts~Ld~-------------g~tviiiTH--~~~ 281 (346)
..-.+..|||||+-||++|-. | ||||.+||- .-.|||||| +.+
T Consensus 698 -------------HTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 698 -------------HTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLI 764 (807)
T ss_pred -------------ceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEeccccee
Confidence 233466899999999999975 3 999999982 667999999 344
Q ss_pred hc
Q 019066 282 LS 283 (346)
Q Consensus 282 ~~ 283 (346)
.+
T Consensus 765 ~e 766 (807)
T KOG0066|consen 765 VE 766 (807)
T ss_pred ee
Confidence 44
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=144.02 Aligned_cols=61 Identities=10% Similarity=-0.036 Sum_probs=52.1
Q ss_pred ccCCCCCCHHHHHHHHHHHhc--------CccccCCCC-----------------CceEEEEec-hhhhccccEEEEEec
Q 019066 240 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 240 ~~~~~~LSgGqrQRv~IArAL--------DEPts~Ld~-----------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
+...+.+|+||+|+..|++++ |||++++|. +.++|++|| ..+..+||++. .|+
T Consensus 86 ~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~-~l~ 164 (200)
T cd03280 86 EQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKRE-GVE 164 (200)
T ss_pred hcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCC-CeE
Confidence 334568999999999999987 999999874 789999999 56778899996 499
Q ss_pred CCeEeecC
Q 019066 294 LGELLGIP 301 (346)
Q Consensus 294 ~G~iv~~g 301 (346)
+|+++.++
T Consensus 165 ~g~l~~~~ 172 (200)
T cd03280 165 NASMEFDP 172 (200)
T ss_pred EEEEEEec
Confidence 99998774
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-16 Score=150.74 Aligned_cols=157 Identities=14% Similarity=0.181 Sum_probs=108.8
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc---CCCCCCCCceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE---NDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~---~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
|+|+||+|++|++++|+|+|||||||++++|+|... ...+.|++|.|.+--..+. ..++-..
T Consensus 399 lr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~---------------a~iPge~ 463 (593)
T COG2401 399 LRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS---------------ALIPGEY 463 (593)
T ss_pred eeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh---------------hccCccc
Confidence 666999999999999999999999999999999743 2234588998876432221 0111110
Q ss_pred cccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCH
Q 019066 169 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 248 (346)
Q Consensus 169 ~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSg 248 (346)
.+.+...++.+++.. ...+-..+.++|.++|+.+.+ +..+..++||-
T Consensus 464 ---------Ep~f~~~tilehl~s---------~tGD~~~AveILnraGlsDAv---------------lyRr~f~ELSt 510 (593)
T COG2401 464 ---------EPEFGEVTILEHLRS---------KTGDLNAAVEILNRAGLSDAV---------------LYRRKFSELST 510 (593)
T ss_pred ---------ccccCchhHHHHHhh---------ccCchhHHHHHHHhhccchhh---------------hhhccHhhcCc
Confidence 001111122222210 111223467889999999866 56778899999
Q ss_pred HHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhhcc-ccEEEEEecCCeE
Q 019066 249 EKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLLSL-TDRARIRTYLGEL 297 (346)
Q Consensus 249 GqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~~~-aDri~v~l~~G~i 297 (346)
||+.|..||+++ ||-.|.||+ |.|++++|| +....+ -|+++. +.-|+.
T Consensus 511 GQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~-vgYg~v 587 (593)
T COG2401 511 GQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLIL-VGYGKV 587 (593)
T ss_pred chHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEE-eecccc
Confidence 999999999999 888888885 999999999 455556 588854 555543
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.1e-15 Score=151.42 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCC-------
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSF------- 267 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~L------- 267 (346)
.+..+.|..|||.-- .+.++..+|||||.||+-+|.-| ||||.||
T Consensus 800 ~rkLqtL~dVGLgYi----------------~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~k 863 (935)
T COG0178 800 ARKLQTLVDVGLGYI----------------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKK 863 (935)
T ss_pred HHHHHHHHHcCcceE----------------ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHH
Confidence 344566888888742 36888999999999999999998 9999995
Q ss_pred ---------CCCceEEEEech-hhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 268 ---------RDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 268 ---------d~g~tviiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
|.|-|||+|.|+ ++.+.||+| +-| ..|+||+.|+|+++.+.+ .++|..|+..
T Consensus 864 Ll~VL~rLvd~GnTViVIEHNLdVIk~AD~I-IDLGPeGG~~GG~iva~GTPeeva~~~-~S~Tg~yLk~ 931 (935)
T COG0178 864 LLEVLHRLVDKGNTVIVIEHNLDVIKTADWI-IDLGPEGGDGGGEIVASGTPEEVAKVK-ASYTGKYLKK 931 (935)
T ss_pred HHHHHHHHHhCCCEEEEEecccceEeecCEE-EEcCCCCCCCCceEEEecCHHHHHhCc-cchhHHHHHH
Confidence 459999999994 677779999 443 568999999999999876 7788888764
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.7e-16 Score=149.89 Aligned_cols=172 Identities=16% Similarity=0.167 Sum_probs=107.6
Q ss_pred eeEEEeCCCCceecccCceeeeEE-ecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccc
Q 019066 75 NKILSYTPGAWIENVGGMTLSDYD-VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 153 (346)
Q Consensus 75 ~l~~~y~~~~~~~~l~~L~~isl~-i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~ 153 (346)
++.-+|+.+.. +-..|- .++|.++||+|+||-||||.+++|+|-+. |.=|+- ++.+- +
T Consensus 79 e~vHRYg~NgF-------kL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~-----PNLG~~--~~pp~-------w 137 (591)
T COG1245 79 EVVHRYGVNGF-------KLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELK-----PNLGRY--EDPPS-------W 137 (591)
T ss_pred cceeeccCCce-------EEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc-----cCCCCC--CCCCC-------H
Confidence 35567865543 223332 46899999999999999999999999999 765532 12110 0
Q ss_pred cccCCCCccceeecccc--cc-----cchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 154 YTIPRGSNSFSLYDTRS--LS-----DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 154 ~~~~r~~i~~~~~d~~~--~~-----~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
..+-++.-|--+|+... .. -.-.|.+.+.+..+...+..-+. ....+-...++.+.++|..
T Consensus 138 deVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk------~~de~g~~devve~l~L~n------ 205 (591)
T COG1245 138 DEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLK------KVDERGKFDEVVERLGLEN------ 205 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHH------hhhhcCcHHHHHHHhcchh------
Confidence 00000000111222110 00 11244444444433222221110 1111235677888999988
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC----------------CCceEEEEechh-
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR----------------DDKPVVVVTHGD- 280 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld----------------~g~tviiiTH~~- 280 (346)
++++..++||||+.||+|||.|+ |||+|-|| ++++||+|.|++
T Consensus 206 -----------vl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa 274 (591)
T COG1245 206 -----------VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA 274 (591)
T ss_pred -----------hhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH
Confidence 67999999999999999999999 99999987 179999999964
Q ss_pred -hhccccEEEE
Q 019066 281 -LLSLTDRARI 290 (346)
Q Consensus 281 -~~~~aDri~v 290 (346)
+-.++|-|.|
T Consensus 275 vLD~lsD~vhI 285 (591)
T COG1245 275 VLDYLSDFVHI 285 (591)
T ss_pred HHHHhhheeEE
Confidence 4467899864
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.7e-15 Score=133.43 Aligned_cols=57 Identities=7% Similarity=-0.049 Sum_probs=43.5
Q ss_pred cccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC-----------------C-ceEEEEec--hhhhccc
Q 019066 239 LKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD-----------------D-KPVVVVTH--GDLLSLT 285 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~-----------------g-~tviiiTH--~~~~~~a 285 (346)
.+..+.+||+||||++.+|++| ||||++||+ | .|+|++|| ..+..+|
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 4567889999999999887542 999999874 3 47999999 3566667
Q ss_pred c--EEEEEecCCe
Q 019066 286 D--RARIRTYLGE 296 (346)
Q Consensus 286 D--ri~v~l~~G~ 296 (346)
| +++ ++++|+
T Consensus 200 ~~~~v~-~l~~g~ 211 (213)
T cd03277 200 EKMTVL-CVYNGP 211 (213)
T ss_pred CceEEE-EEecCc
Confidence 6 564 477775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=159.96 Aligned_cols=96 Identities=17% Similarity=0.068 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCC------
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFR------ 268 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld------ 268 (346)
.+..+.|..+||.-- .+.++..+|||||.||+-||.-| ||||.||.
T Consensus 1677 ~~~L~~L~~vGLgYl----------------~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~ 1740 (1809)
T PRK00635 1677 QKPLQALIDNGLGYL----------------PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSA 1740 (1809)
T ss_pred HHHHHHHHHcCCCee----------------eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHH
Confidence 445677889999752 36888999999999999999988 99999975
Q ss_pred ----------CCceEEEEec-hhhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 019066 269 ----------DDKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 269 ----------~g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.|.|||+|.| .++.+.||+| |-| ..|+||+.|+|+++..++. ++|..++.
T Consensus 1741 Ll~~l~~L~~~g~tvivieH~~~~i~~aD~i-idlgp~gG~~GG~iva~Gtp~~i~~~~~-S~t~~~l~ 1807 (1809)
T PRK00635 1741 LLVQLRTLVSLGHSVIYIDHDPALLKQADYL-IEMGPGSGKTGGKILFSGPPKDISASKD-SLLKTYMC 1807 (1809)
T ss_pred HHHHHHHHHhcCCeEEEEeCCHHHHHhCCEE-EEcCCCcccCCCEEEEEeCHHHHhhCCC-CcHHHHhc
Confidence 3999999999 4566669999 454 4589999999999988754 56666653
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.9e-15 Score=142.57 Aligned_cols=193 Identities=15% Similarity=0.095 Sum_probs=121.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh-ccCCCCCCCCceEEECceeCCCcc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl-~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
|.++|.+.+-.+... +.+.||.|-.|..++||||||-||||||+-|+.- +. .|..=.|++..+.+....
T Consensus 265 IKiEnF~ISA~Gk~L------FvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala----IPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 265 IKIENFDISAQGKLL------FVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA----IPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ceeeeeeeeccccee------eeccceEEEecceecccCCCCCchHHHHHHHHhhhcc----CCCCCceEeeeeeeeecC
Confidence 899999988765443 6679999999999999999999999999998642 22 133445666555542111
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhH------HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK------LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~------~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
...-.. .+-.|.++. .+..+...+.. .++.+.+..-....+.......+.+++++|.-+|+..++
T Consensus 335 t~Ai~t-------vl~aD~kRl-~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEM- 405 (807)
T KOG0066|consen 335 TSAIDT-------VLKADKKRL-ALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEM- 405 (807)
T ss_pred cHHHHH-------HHHhhHHHH-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhH-
Confidence 000000 000111100 00111111100 111111111000011111234567888999999998764
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--h
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--G 279 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~ 279 (346)
.+++...+|||-|-||++|||| ||||..||- .+|++||+| .
T Consensus 406 ---------------Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQg 470 (807)
T KOG0066|consen 406 ---------------QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQG 470 (807)
T ss_pred ---------------hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccc
Confidence 5788899999999999999998 999999872 789999999 4
Q ss_pred hhhccccEEEEEecCCeEe
Q 019066 280 DLLSLTDRARIRTYLGELL 298 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv 298 (346)
++-..|..|+ .|++-++-
T Consensus 471 FLD~VCtdII-HLD~qkLh 488 (807)
T KOG0066|consen 471 FLDSVCTDII-HLDNQKLH 488 (807)
T ss_pred hHHHHHHHHh-hhhhhhhh
Confidence 7888898885 47766554
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-14 Score=132.13 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=44.1
Q ss_pred cCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEEEE
Q 019066 241 SMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIR 291 (346)
Q Consensus 241 ~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~ 291 (346)
+....|||||+||+++|+++ |||+++||. +.|+|++|| ..+..+||++++
T Consensus 166 ~~~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~- 244 (276)
T cd03241 166 PLAKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFL- 244 (276)
T ss_pred hhhhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEE-
Confidence 33446999999999999742 999999874 779999999 446678999965
Q ss_pred ecCCe
Q 019066 292 TYLGE 296 (346)
Q Consensus 292 l~~G~ 296 (346)
|.+|.
T Consensus 245 l~~~~ 249 (276)
T cd03241 245 VEKEV 249 (276)
T ss_pred EEEec
Confidence 76654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-14 Score=129.19 Aligned_cols=59 Identities=10% Similarity=-0.029 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHHhc-----------Ccc---ccCCCC---------------CceEEEEec-hhhhccccEEEEEe
Q 019066 243 EGDSDVEKQYNQIVATTF-----------NCP---YLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRT 292 (346)
Q Consensus 243 ~~~LSgGqrQRv~IArAL-----------DEP---ts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~l 292 (346)
...+|.|++|+..+++++ ||| |+++|. +.++|++|| ..+.++||++.. +
T Consensus 87 ~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~-i 165 (222)
T cd03285 87 LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPN-V 165 (222)
T ss_pred hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCC-e
Confidence 347888888888888887 999 777663 689999999 678889999964 8
Q ss_pred cCCeEeecCC
Q 019066 293 YLGELLGIPP 302 (346)
Q Consensus 293 ~~G~iv~~g~ 302 (346)
++|++...+.
T Consensus 166 ~~g~~~~~~~ 175 (222)
T cd03285 166 KNLHVTALTD 175 (222)
T ss_pred EEEEEEEEEe
Confidence 9999987654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-13 Score=119.08 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHhc-------------CccccCCCC----------------CceEEEEec-hhhhccccEEEEEec
Q 019066 246 SDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 246 LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
||+||+||++|||++ |||+++||. |.|+|++|| ......+|+++. ++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~-i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIG-VL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEE-EE
Confidence 999999999999975 999999884 689999999 445567999965 54
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-13 Score=122.91 Aligned_cols=63 Identities=8% Similarity=-0.088 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHHHHHhc--------CccccCCCC-----------------CceEEEEec-hhhhccccEEEEEecCCe
Q 019066 243 EGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH-GDLLSLTDRARIRTYLGE 296 (346)
Q Consensus 243 ~~~LSgGqrQRv~IArAL--------DEPts~Ld~-----------------g~tviiiTH-~~~~~~aDri~v~l~~G~ 296 (346)
.+.++.+++|...|+..+ |||++++|+ +.++|++|| ..+...|+++.. +..++
T Consensus 89 ~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~-l~~~~ 167 (202)
T cd03243 89 RSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPG-VKNLH 167 (202)
T ss_pred ceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCC-eEEEE
Confidence 346677777766665544 999999774 789999999 566667888754 88899
Q ss_pred EeecCCcccc
Q 019066 297 LLGIPPAKQI 306 (346)
Q Consensus 297 iv~~g~~~~l 306 (346)
+...++..++
T Consensus 168 ~~~~~~~~~~ 177 (202)
T cd03243 168 MEELITTGGL 177 (202)
T ss_pred EEEEecCCee
Confidence 9888765443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.38 E-value=9e-13 Score=114.63 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHhc-------------CccccCCCC----------------CceEEEEec-hhhhccccEEEEEec
Q 019066 245 DSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
+||+||+||+++|++| |||++++|. +.++|++|| ......+|+++. |+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~-l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIH-IK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEE-EE
Confidence 5999999999999988 999999874 579999999 455567999964 64
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-12 Score=118.97 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=29.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++.++++.+| +.+|+|||||||||++.+|.-+..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~ 46 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLAT 46 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhcc
Confidence 55588888887 789999999999999999976653
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.36 E-value=8e-13 Score=106.90 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=40.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
|++++|++++|++++|+||||||||||++++. +|.+.++|.++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-----------~G~i~~~g~di~ 48 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI-----------KRKHRLVGDDNV 48 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-----------CCeEEEeeEeHH
Confidence 66699999999999999999999999999975 488999999875
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=117.48 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=29.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++|+. |++++|+||||||||||+|+|++...
T Consensus 17 ~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~ 50 (199)
T cd03283 17 ANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI 50 (199)
T ss_pred cceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 55576665 79999999999999999999998663
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-12 Score=126.25 Aligned_cols=143 Identities=11% Similarity=0.137 Sum_probs=94.2
Q ss_pred ceeeeEEecCCc-----EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEEECceeCCCcccccccccCCCCcccee
Q 019066 92 MTLSDYDVPKTT-----SLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSL 165 (346)
Q Consensus 92 L~~isl~i~~Ge-----~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~r~~i~~~~ 165 (346)
+-+..|.|..|+ ++..+|+||.|||||+++++|.++ |++| +|-.-.. +|-+
T Consensus 352 ~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-----pd~~~e~p~lnV------------------Sykp 408 (592)
T KOG0063|consen 352 VGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-----PDEGGEIPVLNV------------------SYKP 408 (592)
T ss_pred eeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-----CCccCcccccce------------------eccc
Confidence 455888888884 789999999999999999999998 8765 3322211 2223
Q ss_pred ecccc-cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCC
Q 019066 166 YDTRS-LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 244 (346)
Q Consensus 166 ~d~~~-~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~ 244 (346)
|...- +.+.|.|- +-..+++... ..+.+.+.++-+.++. ..++-..
T Consensus 409 qkispK~~~tvR~l---l~~kIr~ay~-------------~pqF~~dvmkpL~ie~-----------------i~dqevq 455 (592)
T KOG0063|consen 409 QKISPKREGTVRQL---LHTKIRDAYM-------------HPQFVNDVMKPLQIEN-----------------IIDQEVQ 455 (592)
T ss_pred cccCccccchHHHH---HHHHhHhhhc-------------CHHHHHhhhhhhhHHH-----------------HHhHHhh
Confidence 33221 12223221 1111111111 1123344455555554 3466678
Q ss_pred CCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEechhh--hccccEEEE
Q 019066 245 DSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHGDL--LSLTDRARI 290 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~~~--~~~aDri~v 290 (346)
+||||++||++||.+| |||.+-||. ++|-.+|.|+++ ..+|||+++
T Consensus 456 ~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrviv 529 (592)
T KOG0063|consen 456 GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIV 529 (592)
T ss_pred cCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEE
Confidence 9999999999999999 999999883 889999999754 468999954
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-12 Score=137.19 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC-----
Q 019066 206 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----- 269 (346)
Q Consensus 206 ~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~----- 269 (346)
.+++ ++|+.+||... .+++.+.+|||||+||++||+|| ||||++||+
T Consensus 467 ~~rl-~~L~~vGL~~l----------------~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~ 529 (943)
T PRK00349 467 RERL-KFLVDVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDR 529 (943)
T ss_pred HHHH-HHhhccccCCC----------------CCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHH
Confidence 3444 36788888651 15889999999999999999998 999999984
Q ss_pred -----------CceEEEEec--hhhhccccEEEEEe------cCCeEeecCCccccccCC
Q 019066 270 -----------DKPVVVVTH--GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 -----------g~tviiiTH--~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~ 310 (346)
|.|||+|+| +.+ ..||+|+ +| ++|+|+..|+++++...+
T Consensus 530 L~~~L~~L~~~G~TVIvVeH~~~~i-~~aD~vi-~LgpgaG~~~G~iv~~g~~~e~~~~~ 587 (943)
T PRK00349 530 LIETLKHLRDLGNTLIVVEHDEDTI-RAADYIV-DIGPGAGVHGGEVVASGTPEEIMKNP 587 (943)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEE-EeccccCCCCCEEeeccCHHHHhcCh
Confidence 899999999 444 4699996 49 999999999999886653
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-12 Score=135.77 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=61.9
Q ss_pred cccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC----------------CceEEEEec-hhhhccccEEEE
Q 019066 239 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 290 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v 290 (346)
+++++.+|||||+||++||+|| ||||++||+ |.|||+|+| ......||+++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi- 559 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVI- 559 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEE-
Confidence 5889999999999999999998 999999984 899999999 33345899996
Q ss_pred Ee------cCCeEeecCCccccccCC
Q 019066 291 RT------YLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 291 ~l------~~G~iv~~g~~~~l~~~~ 310 (346)
+| ++|+|+..|+++++...+
T Consensus 560 ~LgpgaG~~~G~Iv~~g~~~el~~~~ 585 (924)
T TIGR00630 560 DIGPGAGIHGGEVVASGTPEEILANP 585 (924)
T ss_pred EecccccCCCCEEeeccCHHHHhcCc
Confidence 49 999999999999886543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-12 Score=117.11 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=37.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..++|+||||||||||+++|+|++. |++|+|.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-----~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-----TGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-----CCCceEEECCEEee
Confidence 5789999999999999999999999 99999999999975
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-11 Score=110.90 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=33.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|++|++++|++++|+|||||||||++++|+++.-
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 677999999999999999999999999999988753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=107.90 Aligned_cols=71 Identities=11% Similarity=-0.120 Sum_probs=56.1
Q ss_pred cccccccceeeeeechhhhcccCCCCCCHHH--------HHHHHHHHhc--Cc-----cccCCC---------------C
Q 019066 220 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK--------QYNQIVATTF--NC-----PYLSFR---------------D 269 (346)
Q Consensus 220 ~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq--------rQRv~IArAL--DE-----Pts~Ld---------------~ 269 (346)
+++.++++++++++++.|. .+|||+ +||+++||++ +- ||+.+| .
T Consensus 110 Dei~r~a~a~~ev~~~~G~------~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~ 183 (249)
T cd01128 110 DSITRLARAYNTVVPPSGK------ILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGT 183 (249)
T ss_pred ECHHHhhhhhhhccccCCC------CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeheecCCCcccchHHHHHhcC
Confidence 6788899999999998854 579999 9999999997 22 244443 1
Q ss_pred CceEEEEech-hhhccccEEEEEecCCeE
Q 019066 270 DKPVVVVTHG-DLLSLTDRARIRTYLGEL 297 (346)
Q Consensus 270 g~tviiiTH~-~~~~~aDri~v~l~~G~i 297 (346)
+.|.|++||. ......|.|.| |+.|++
T Consensus 184 ~~~~ivls~~la~~~~~paI~v-l~s~sr 211 (249)
T cd01128 184 GNMELVLDRRLAERRIFPAIDI-LKSGTR 211 (249)
T ss_pred CCcEEEEchHHhhCCCCCeEEE-cCCCCc
Confidence 4788999995 45667999975 999997
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-10 Score=105.08 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=30.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.+|++|++.+ ++++|+||||||||||+|+++++.
T Consensus 21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 6669999987 899999999999999999998765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.2e-11 Score=104.23 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=36.4
Q ss_pred ccCCCCCCHHHHHHHHHHHhc--------CccccCCCC------------------CceEEEEec-hhhhccccE
Q 019066 240 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDR 287 (346)
Q Consensus 240 ~~~~~~LSgGqrQRv~IArAL--------DEPts~Ld~------------------g~tviiiTH-~~~~~~aDr 287 (346)
++..+++|+|++|...+++.. |||++++|+ +.++|++|| ..+.++||+
T Consensus 56 ~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 56 AQGLSTFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred hccccHHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 445668899988877777763 999999763 678999999 556666764
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-10 Score=114.15 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=43.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~~~g~~i~ 146 (346)
|++|||+|++||+++|+||||||||||++ +|+.. |++| +|.++|+++.
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-----~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-----FSEGYEFFLDATHSF 70 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-----CCCCCEEEECCEECC
Confidence 55599999999999999999999999999 67777 7777 7999999986
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-09 Score=97.50 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEEE
Q 019066 245 DSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARI 290 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v 290 (346)
.||||||-+++||--| ||+.++||+ +.-+|++|| ......||+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~ 210 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIG 210 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999766 999999984 578999999 677777888754
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-10 Score=120.01 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=30.2
Q ss_pred eeEEecCC-cEEEEEcCCCCCHHHHHHHHhhh-cc
Q 019066 95 SDYDVPKT-TSLLLIGPKGSGKSSLVNRISKV-FE 127 (346)
Q Consensus 95 isl~i~~G-e~iaIvGpnGsGKSTLl~~L~gl-~~ 127 (346)
+|+++.++ ++++|+||||+|||||+++|++. +-
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~ 348 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM 348 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH
Confidence 68888877 89999999999999999999998 44
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=107.16 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=43.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
++++ |.+.+|++++|+|+||+|||||+++|+++.+ ++.|.|.+.|+.-
T Consensus 149 id~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-----~~~gvI~~~Gerg 196 (438)
T PRK07721 149 IDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-----ADLNVIALIGERG 196 (438)
T ss_pred hhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEEecCC
Confidence 5569 9999999999999999999999999999999 9999999976553
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-08 Score=96.91 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=31.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++++++.+| +.+|+||||||||||+.+|..+..
T Consensus 14 ~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~~ 48 (361)
T PRK00064 14 YEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLAP 48 (361)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhCC
Confidence 66699999998 999999999999999999987653
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-09 Score=104.08 Aligned_cols=158 Identities=17% Similarity=0.117 Sum_probs=91.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE--CceeCCCcccccccccCCCCccceeecccccccc-hh
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY--NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-AS 176 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~--~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~ 176 (346)
++|+++++||.||-||||-+++++|-.+ |.-|.--. +++++- +++ ....+. .....+..+. +... -+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~k-----pnlg~~~~pp~w~~il-~~f-rgselq-~yftk~le~~--lk~~~kp 167 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRYDNPPDWQEIL-TYF-RGSELQ-NYFTKILEDN--LKAIIKP 167 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCC-----CCCCCCCCCcchHHHh-hhh-hhHHHh-hhhhhhcccc--ccCcCCh
Confidence 5899999999999999999999999998 66553211 011110 000 000000 0000011110 0011 13
Q ss_pred hchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHH
Q 019066 177 DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIV 256 (346)
Q Consensus 177 qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~I 256 (346)
|.+.-.+..+..++.--+ .....++...++++.+.|.. .+++-..+||||+.||.+|
T Consensus 168 Qyvd~ipr~~k~~v~~~l------~~~~~r~~~~~~~~~~~L~~-----------------~~~re~~~lsggelqrfai 224 (592)
T KOG0063|consen 168 QYVDQIPRAVKGTVGSLL------DRKDERDNKEEVCDQLDLNN-----------------LLDREVEQLSGGELQRFAI 224 (592)
T ss_pred HHHHHHHHHHHHHHHHHH------HHHhhcccHHHHHHHHHHhh-----------------HHHhhhhhcccchhhhhhh
Confidence 433333332222211100 01222234456677777776 5678888999999999999
Q ss_pred HHhc---------CccccCCC----------------CCceEEEEech--hhhccccEEEE
Q 019066 257 ATTF---------NCPYLSFR----------------DDKPVVVVTHG--DLLSLTDRARI 290 (346)
Q Consensus 257 ArAL---------DEPts~Ld----------------~g~tviiiTH~--~~~~~aDri~v 290 (346)
|.+- |||.+.|| ++.=+|+|.|+ .+..++|-+.+
T Consensus 225 a~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCc 285 (592)
T KOG0063|consen 225 AMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICC 285 (592)
T ss_pred hhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeE
Confidence 9997 99999987 26779999994 34456787754
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=6e-09 Score=103.62 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=53.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
.++-+.++..|..+- ++ ++.+ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.|.+.|+.
T Consensus 130 ~~~r~~i~~~l~TGi--ra---ID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~gvI~~iGer 193 (432)
T PRK06793 130 AFEREEITDVFETGI--KS---IDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-----ADINVISLVGER 193 (432)
T ss_pred chheechhhccCCCC--EE---Eecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-----CCeEEEEeCCCC
Confidence 467778888886543 35 4445 9999999999999999999999999999998 888988776654
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-08 Score=104.12 Aligned_cols=81 Identities=22% Similarity=0.268 Sum_probs=69.5
Q ss_pred cccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC----------------CceEEEEec-hhhhccccEEEE
Q 019066 239 LKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARI 290 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v 290 (346)
+++...+|||||.||+-+|.-| |||+.||-+ |-|+|+|.| +++.+.||+| |
T Consensus 475 L~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~i-I 553 (935)
T COG0178 475 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHI-I 553 (935)
T ss_pred ccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEE-E
Confidence 5888999999999999999998 999999742 999999999 6788889999 4
Q ss_pred E------ecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 291 R------TYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 291 ~------l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
- .+.|+|++.|++++++.+++. -|..++..
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~~~S-lTG~YLsg 589 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLANPES-LTGQYLSG 589 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhCCcc-hhhHhhcC
Confidence 4 567999999999999999763 45666653
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.6e-09 Score=102.71 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=55.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
.+.++.+++++.|..+. .+ ++.++ .|.+||+++|+||||||||||+++|+++.+ |+.|.|.+.|
T Consensus 137 p~~~~r~~v~~~l~TGi--~a---ID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liG 200 (450)
T PRK06002 137 PPAMTRARVETGLRTGV--RV---IDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVG 200 (450)
T ss_pred CCCeEeecceEEcCCCc--EE---eeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeecc
Confidence 45699999999997653 35 44485 999999999999999999999999999999 9999988864
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.9e-08 Score=97.44 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=61.3
Q ss_pred hhhhHHHHHHhhhhhhhhcc---CCCcEEEeeeEEEeCCCCceecccCce-----------eeeEEecCCcEEEEEcCCC
Q 019066 47 RRRDAVFREVLQSYDQLRTR---IGSLTDAKNKILSYTPGAWIENVGGMT-----------LSDYDVPKTTSLLLIGPKG 112 (346)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~y~~~~~~~~l~~L~-----------~isl~i~~Ge~iaIvGpnG 112 (346)
....+|++++++..+..... ...-++|+||++.|++... + |+ |+++.|.+|++++|+||+|
T Consensus 104 ~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~er~--~---Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g 178 (415)
T TIGR00767 104 PKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPNERL--R---LETSTEDLSTRVLDLFAPIGKGQRGLIVAPPK 178 (415)
T ss_pred cccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCCccc--e---eecCccccceeeeeeEEEeCCCCEEEEECCCC
Confidence 34567888988876553322 2345999999999987554 3 65 7999999999999999999
Q ss_pred CCHHHHHHHHhhhcc
Q 019066 113 SGKSSLVNRISKVFE 127 (346)
Q Consensus 113 sGKSTLl~~L~gl~~ 127 (346)
||||||++.|...+.
T Consensus 179 ~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 179 AGKTVLLQKIAQAIT 193 (415)
T ss_pred CChhHHHHHHHHhhc
Confidence 999999999999886
|
Members of this family differ in the specificity of RNA binding. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-08 Score=106.16 Aligned_cols=58 Identities=5% Similarity=-0.165 Sum_probs=42.9
Q ss_pred ccCCCCCCHHHHHHHHHHHhc--------CccccCCCC-----------------CceEEEEec--hhhhccccEEEEEe
Q 019066 240 KSMEGDSDVEKQYNQIVATTF--------NCPYLSFRD-----------------DKPVVVVTH--GDLLSLTDRARIRT 292 (346)
Q Consensus 240 ~~~~~~LSgGqrQRv~IArAL--------DEPts~Ld~-----------------g~tviiiTH--~~~~~~aDri~v~l 292 (346)
.+..+++|+||+|++.|++++ |||++|+|+ +.++|++|| +.+...+++.. +
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~--v 462 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREG--V 462 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCC--e
Confidence 344678999999999999996 999999874 889999999 34444556553 2
Q ss_pred cCCeEee
Q 019066 293 YLGELLG 299 (346)
Q Consensus 293 ~~G~iv~ 299 (346)
.++.+..
T Consensus 463 ~~~~~~~ 469 (782)
T PRK00409 463 ENASVEF 469 (782)
T ss_pred EEEEEEE
Confidence 3444443
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.8e-08 Score=87.40 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=38.8
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh-hccCCCCCCCCceEEE
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTY 140 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g-l~~~~~~~p~~G~I~~ 140 (346)
.+|++|++.+|++++|+||||+||||+++++++ .+. ++.|....
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-----a~~G~~v~ 65 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-----AQIGSFVP 65 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HhCCCEEE
Confidence 677999999999999999999999999999999 555 77776544
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-08 Score=102.34 Aligned_cols=85 Identities=11% Similarity=-0.046 Sum_probs=64.6
Q ss_pred HHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------------Cccc-cCCCC
Q 019066 210 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPY-LSFRD 269 (346)
Q Consensus 210 ~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------------DEPt-s~Ld~ 269 (346)
...|+.++. .....+|+++++.+++.|..+..+..|||||+||++||+|| |||| ++||.
T Consensus 434 ~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~ 512 (562)
T PHA02562 434 NHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDA 512 (562)
T ss_pred HHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccch
Confidence 344444443 23345688899999999887778899999999999999652 9998 67774
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEecC-Ce
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRTYL-GE 296 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l~~-G~ 296 (346)
+.|+|+||| ......||++++ |.+ |+
T Consensus 513 ~~~~~~~~~l~~~~~~~iiiish~~~~~~~~d~~~~-l~~~~~ 554 (562)
T PHA02562 513 EGTKALLSILDSLKDTNVFVISHKDHDPQKFDRHLK-MEKVGR 554 (562)
T ss_pred hHHHHHHHHHHhCCCCeEEEEECchhchhhhhcEEE-EEEECC
Confidence 789999999 455667999965 654 44
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=85.79 Aligned_cols=29 Identities=24% Similarity=0.531 Sum_probs=23.9
Q ss_pred eEEecCC--cEEEEEcCCCCCHHHHHHHHhh
Q 019066 96 DYDVPKT--TSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 96 sl~i~~G--e~iaIvGpnGsGKSTLl~~L~g 124 (346)
++.+.++ .+++|+||||+|||||+|.|..
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 3444444 7899999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-08 Score=85.78 Aligned_cols=31 Identities=16% Similarity=0.358 Sum_probs=26.1
Q ss_pred CCceEEEEec-hhhhccccEEEEEecCCeEeec
Q 019066 269 DDKPVVVVTH-GDLLSLTDRARIRTYLGELLGI 300 (346)
Q Consensus 269 ~g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~ 300 (346)
.+.++|+++| ..+..++|+|. .+.+|+|.+.
T Consensus 125 ~~~~~i~v~h~~~~~~~~~~i~-~~~~~~i~~~ 156 (174)
T PRK13695 125 SEKPVIATLHRRSVHPFVQEIK-SRPGGRVYEL 156 (174)
T ss_pred CCCeEEEEECchhhHHHHHHHh-ccCCcEEEEE
Confidence 4779999999 66777899995 5999999876
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.3e-08 Score=87.11 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=40.8
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 143 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~ 143 (346)
+.+.+++|+.++|+||||||||||+++|+++++ ++.|.|.+.+.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-----~~~~~i~ied~ 61 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIP-----PDERIITIEDT 61 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEECCc
Confidence 677899999999999999999999999999999 89999998764
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=94.58 Aligned_cols=176 Identities=9% Similarity=-0.014 Sum_probs=91.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc---eeCCCcccccccccCCCCccceeecc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS---SVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g---~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
++++ |++.+||+++|+|+||||||||+++|++..+. .+.|.|.+.| .++.... .....-.+...++++.
T Consensus 155 ID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~----~~~~vi~liGerg~ev~~~~-~~~l~~~g~~~svvvv-- 226 (442)
T PRK06315 155 IDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE----ADVNVIALIGERGREVREFI-EGDLGEEGMKRSVIVV-- 226 (442)
T ss_pred Eecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc----CCceEEEEECCCchHHHHHH-HHHHHhcCCceEEEEE--
Confidence 4447 99999999999999999999999999998850 3446676644 4442100 0000000111122210
Q ss_pred cccccchhhchHh--hHHHHHhhhhcchhhccCC--ChHHHHHHHHHHHHHcCCCc-ccccccceeeeeechhhhcccCC
Q 019066 169 RSLSDDASDNINM--IKLWIMEGVRHGELVIRRS--DSSSLRNRMRCKAHKIGCEP-SVIRKVNFVIFVVDGLAVLKSME 243 (346)
Q Consensus 169 ~~~~~~v~qn~~~--~~~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~v~e~~~~~~~~ 243 (346)
..-+|++.. .+..+...++..+..++.. ...+...++.++++.+++.. +. .+....+|
T Consensus 227 ----ats~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gep-------------p~~~gypP 289 (442)
T PRK06315 227 ----STSDQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEP-------------PARAGYTP 289 (442)
T ss_pred ----eCCCCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCC-------------ccccCCCC
Confidence 001343321 1112333344433333211 12455678899999999941 00 11468899
Q ss_pred CCCCHHHHHHHHHHHhcCccccCCCCC-ceEEEEec----hhhhccccEEEEEecCCeEeecC
Q 019066 244 GDSDVEKQYNQIVATTFNCPYLSFRDD-KPVVVVTH----GDLLSLTDRARIRTYLGELLGIP 301 (346)
Q Consensus 244 ~~LSgGqrQRv~IArALDEPts~Ld~g-~tviiiTH----~~~~~~aDri~v~l~~G~iv~~g 301 (346)
+.|| .+++-+ |=......| +|.|.+-. +.-.-++|.+. -+-+|.|+-+-
T Consensus 290 ~~fS-------~l~~ll-ERag~~~~GSITai~tVl~~gdD~~dpi~d~~~-~i~dg~ivLsr 343 (442)
T PRK06315 290 SVFS-------TLPKLL-ERSGASDKGTITAFYTVLVAGDDMNEPVADEVK-SILDGHIVLSN 343 (442)
T ss_pred chhh-------HhHHHH-HHhcCCCCcceeeeEEEEecCCCCCcccHHHhh-hhcceEEEEec
Confidence 9999 233333 000111222 34433333 22233556664 36677777653
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.8e-07 Score=81.27 Aligned_cols=24 Identities=38% Similarity=0.769 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHH-HHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLV-NRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl-~~L~gl~~ 127 (346)
.++|+|++|||||||+ +.+.|.+.
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999 68888775
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=2e-06 Score=79.10 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=31.7
Q ss_pred ecCCcEEEEEcCCCCCHHHH-HHHHhhhccCCCCCCCCceEEEC
Q 019066 99 VPKTTSLLLIGPKGSGKSSL-VNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTL-l~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
+++|++++|+|++||||||| ++++.++.+ +....+++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-----~g~~~~yi~ 59 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ-----NGYSVSYVS 59 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEEe
Confidence 68999999999999999999 699999877 544555554
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.6e-07 Score=93.86 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEEEEecC
Q 019066 244 GDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYL 294 (346)
Q Consensus 244 ~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~l~~ 294 (346)
..|||||+||++||+++ |||+++||. +.+||+||| ..+...||++++ |++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~-l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFK-VEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEE-EEE
Confidence 58999999999999886 999999874 899999999 444568999964 887
Q ss_pred Ce
Q 019066 295 GE 296 (346)
Q Consensus 295 G~ 296 (346)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.9e-07 Score=90.11 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=33.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++ |+|.+|++++|+|+||||||||+++|+|+++
T Consensus 146 ID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 146 INGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred ccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 5559 9999999999999999999999999999998
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-06 Score=85.67 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=41.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++ |.|.+|++++|+|+||+|||||+++|++..+ ++.|.+...|..
T Consensus 154 iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~r 200 (440)
T TIGR01026 154 IDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-----ADVNVIALIGER 200 (440)
T ss_pred eeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-----CCEEEEEEEeec
Confidence 5558 9999999999999999999999999999998 888777665544
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.7e-07 Score=65.51 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=30.2
Q ss_pred ceeeeEEecC-CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPK-TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~-Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++.++++.+ |.++.|.||||||||||+.+|.=++-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4447777875 56999999999999999999987775
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.32 E-value=8e-07 Score=98.31 Aligned_cols=67 Identities=9% Similarity=0.072 Sum_probs=53.3
Q ss_pred eeeeee-chhhhcccCCCCCCHHHHHHHHHHHhc-------------------CccccCCCC----------------Cc
Q 019066 228 FVIFVV-DGLAVLKSMEGDSDVEKQYNQIVATTF-------------------NCPYLSFRD----------------DK 271 (346)
Q Consensus 228 ~~~~~v-~e~~~~~~~~~~LSgGqrQRv~IArAL-------------------DEPts~Ld~----------------g~ 271 (346)
+.+.+| +..+..++++.+|||||++|++||+|| ||||++||+ |.
T Consensus 932 ~~~~~~~~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~ 1011 (1042)
T TIGR00618 932 GLALLVADAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSK 1011 (1042)
T ss_pred CCCeEEEeCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 344433 333355778899999999999999886 999999985 88
Q ss_pred eEEEEec--hhhhccccEEEEEecCC
Q 019066 272 PVVVVTH--GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 272 tviiiTH--~~~~~~aDri~v~l~~G 295 (346)
+|+|||| +.+..+||+|.| ++.+
T Consensus 1012 ~i~iisH~~~~~~~~~~~i~v-~~~~ 1036 (1042)
T TIGR00618 1012 MIGIISHVPEFRERIPHRILV-KKTN 1036 (1042)
T ss_pred EEEEEeCcHHHHHhhCCEEEE-EECC
Confidence 9999999 578899999965 7543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.9e-07 Score=89.97 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=44.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC---ceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~---G~I~~~g~~i~ 146 (346)
++++ |++.+||+++|+|+||||||||+++|++... ++. |.|..+|.++.
T Consensus 142 id~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~ev~ 193 (428)
T PRK08149 142 IDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGREVT 193 (428)
T ss_pred Eeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCccHH
Confidence 5669 9999999999999999999999999999988 665 88988888864
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=7e-07 Score=88.98 Aligned_cols=65 Identities=9% Similarity=0.100 Sum_probs=54.9
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
+.++.+.++..|..+. .+ ++++ |+|.+||+++|+|+||+|||||+++|++... ++.|.+.+.|..
T Consensus 128 ~~~~r~~v~~~l~tGi--~a---ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~-----~d~~vi~~iGeR 192 (433)
T PRK07594 128 PAMVRQPITQPLMTGI--RA---IDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD-----ADSNVLVLIGER 192 (433)
T ss_pred CceeccCHhheeCCCc--ee---eeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC-----CCEEEEEEECCC
Confidence 3588888888886543 35 5559 9999999999999999999999999999998 888888776654
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-06 Score=76.33 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=29.9
Q ss_pred ccCCCCCCHHHHHHHHHHHhc------------CccccCCCC----------------CceEEEEec
Q 019066 240 KSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 240 ~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----------------g~tviiiTH 278 (346)
.-+...+|.|++|.+.|+.+| |||-++|.+ +.-+|++||
T Consensus 231 ~~~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTH 297 (303)
T PF13304_consen 231 EIPLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTH 297 (303)
T ss_dssp EGGGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES
T ss_pred EEeeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCc
Confidence 455678899999998888766 999999763 578999999
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.9e-07 Score=78.51 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+||+++|+|+||||||||+++|++++. + +.++|.++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-----~----~~i~gd~~~ 38 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-----A----KFIDGDDLH 38 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-----C----EEECCcccC
Confidence 589999999999999999999999998 6 578887653
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.5e-06 Score=73.78 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=28.8
Q ss_pred cccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 88 NVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 88 ~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++|+- .|++++- ++.|+|+||+|||||+..|+-...
T Consensus 25 a~r~l~~-~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 25 AFRHLEE-RLEFRAP-ITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred HHHhhhh-hccccCc-eEEEEcCCCccHHHHHHHHHhhcc
Confidence 5555543 4566554 899999999999999999975554
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.4e-06 Score=73.39 Aligned_cols=54 Identities=7% Similarity=-0.027 Sum_probs=38.9
Q ss_pred cccCCCCCCHHHHH-----HHHHHHhc----------CccccCCC---C----------------CceEEEEec--hh--
Q 019066 239 LKSMEGDSDVEKQY-----NQIVATTF----------NCPYLSFR---D----------------DKPVVVVTH--GD-- 280 (346)
Q Consensus 239 ~~~~~~~LSgGqrQ-----Rv~IArAL----------DEPts~Ld---~----------------g~tviiiTH--~~-- 280 (346)
.+..+..+|+|++| +..+.+++ |||++.++ . |.|+|+++| ..
T Consensus 65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~ 144 (187)
T cd01124 65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG 144 (187)
T ss_pred EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence 35567789999888 34444332 99998876 1 889999999 22
Q ss_pred -------hhccccEEEEEec
Q 019066 281 -------LLSLTDRARIRTY 293 (346)
Q Consensus 281 -------~~~~aDri~v~l~ 293 (346)
+..+||.++. |+
T Consensus 145 ~~~~~~~~~~~aD~ii~-l~ 163 (187)
T cd01124 145 TGFGGGDVEYLVDGVIR-LR 163 (187)
T ss_pred cccCcCceeEeeeEEEE-EE
Confidence 6788999954 65
|
A related protein is found in archaea. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.4e-06 Score=69.33 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
+++|.||+|+|||||++.+++... +..+.|.+...+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-----~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-----TKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-----hcCCEEEEEECC
Confidence 478999999999999999999987 666777765443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.5e-07 Score=98.81 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=57.0
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEE
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVV 276 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviii 276 (346)
+..|+...|...+..+.++..|||||+||++||+++ |||+++||. +.++|||
T Consensus 1069 ~~~~~~~~~~~~~~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~ 1148 (1179)
T TIGR02168 1069 LEAGIEIFAQPPGKKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVI 1148 (1179)
T ss_pred cccCceEEEeCCCCccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEE
Confidence 568888888888888899999999999999999984 999999984 6789999
Q ss_pred ec-hhhhccccEEEE
Q 019066 277 TH-GDLLSLTDRARI 290 (346)
Q Consensus 277 TH-~~~~~~aDri~v 290 (346)
|| .....+||+++.
T Consensus 1149 sh~~~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1149 THNKGTMEVADQLYG 1163 (1179)
T ss_pred EcChhHHHHhhhHee
Confidence 99 445567999964
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.9e-07 Score=79.36 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1e-06 Score=89.56 Aligned_cols=62 Identities=21% Similarity=0.247 Sum_probs=54.4
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
+.|++..|+... + ++++++.+..|+.++|+||||||||||++.|.|+++ |.+|++.++...+
T Consensus 187 ~~d~~~v~Gq~~---~---~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp-----p~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQ---G---KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP-----DLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHH---H---HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC-----CCCCcEEEecchh
Confidence 458888887543 4 555999999999999999999999999999999999 9999999987665
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-06 Score=83.13 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=41.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.+.+-|.+
T Consensus 60 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer 106 (326)
T cd01136 60 IDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGER 106 (326)
T ss_pred Eeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecC
Confidence 5559 9999999999999999999999999999998 888877765543
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.9e-07 Score=100.39 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=55.2
Q ss_pred HHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHH------HHHHHHhc---------CccccCCCC-----
Q 019066 210 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY------NQIVATTF---------NCPYLSFRD----- 269 (346)
Q Consensus 210 ~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQ------Rv~IArAL---------DEPts~Ld~----- 269 (346)
..+++..+...++..+|.| +|+++.+ +.|||||+| |++||||+ ||||++||.
T Consensus 1172 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~ 1243 (1311)
T TIGR00606 1172 VSASDKRRNYNYRVVMLKG-DTALDMR-------GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIES 1243 (1311)
T ss_pred HHHHHHcCchHHHhccCCC-CeecCCC-------CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHH
Confidence 3567777888888888888 8888765 379999999 99999999 999999873
Q ss_pred ----------------CceEEEEec--hhhhccc
Q 019066 270 ----------------DKPVVVVTH--GDLLSLT 285 (346)
Q Consensus 270 ----------------g~tviiiTH--~~~~~~a 285 (346)
|.|+|+||| .++..+|
T Consensus 1244 l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1244 LAHALVEIIKSRSQQRNFQLLVITHDEDFVELLG 1277 (1311)
T ss_pred HHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHh
Confidence 468999999 4555544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-06 Score=76.29 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
|++++|+||||||||||+++|++.+. + .+.+.+..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~---~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----T---QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----C---eEEEcCEECC
Confidence 78999999999999999999999886 5 4667666554
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-06 Score=79.04 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=26.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++++|+||||||||||++.|++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999999999987
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.9e-06 Score=89.00 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-hhhhccccEEEEEecC
Q 019066 244 GDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRTYL 294 (346)
Q Consensus 244 ~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~l~~ 294 (346)
..|||||+||++||+++ |||+++||. +.+||+||| ..+..+||+.++ +.+
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~-v~k 507 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFF-VSK 507 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEE-Eec
Confidence 36899999999999997 999999873 789999999 556688999964 766
Q ss_pred Ce
Q 019066 295 GE 296 (346)
Q Consensus 295 G~ 296 (346)
+.
T Consensus 508 ~~ 509 (553)
T PRK10869 508 ET 509 (553)
T ss_pred cc
Confidence 44
|
|
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.1e-06 Score=85.07 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=42.4
Q ss_pred ceeeeEEe---cCCcE-----EEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDV---PKTTS-----LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i---~~Ge~-----iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++++++.+ ++|+. +||+|++|||||||++.|.+++.... ...|.|.+||..+.
T Consensus 82 l~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g--~~~g~IsiDdfYLt 142 (347)
T PLN02796 82 EDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATG--RRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccC--CceeEEEECCcccc
Confidence 55588887 67776 99999999999999999999998210 13588999987654
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=8.9e-06 Score=88.73 Aligned_cols=86 Identities=15% Similarity=0.057 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHH------Hhc---------CccccCCCC-
Q 019066 206 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD- 269 (346)
Q Consensus 206 ~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IA------rAL---------DEPts~Ld~- 269 (346)
...+.+++..+++...-....+.+...|-.. .....+..|||||++|++|| |++ ||||++||+
T Consensus 763 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~ 841 (895)
T PRK01156 763 TSLTRKYLFEFNLDFDDIDVDQDFNITVSRG-GMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDED 841 (895)
T ss_pred HHHHHHHHHHhCCCccceeecCCeeEEEEeC-CccCccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHH
Confidence 3345567777777521111222233233222 33567889999999999765 776 999999984
Q ss_pred -----------------C-ceEEEEec-hhhhccccEEEEEec
Q 019066 270 -----------------D-KPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 270 -----------------g-~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
+ .|+|+||| ......||+++. +.
T Consensus 842 ~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~ii~-~~ 883 (895)
T PRK01156 842 RRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVAYE-VK 883 (895)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeEEE-EE
Confidence 2 37999999 445578999965 54
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.11 E-value=3e-06 Score=94.21 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=57.5
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEE
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVV 276 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviii 276 (346)
+..|++..|.+.+...+++..||||||++++||++| |||+++||. +.++|+|
T Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~ 1133 (1164)
T TIGR02169 1054 FAGGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVV 1133 (1164)
T ss_pred ccCCeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 456899999888887888999999999999999988 999999985 6789999
Q ss_pred ec-hhhhccccEEEE
Q 019066 277 TH-GDLLSLTDRARI 290 (346)
Q Consensus 277 TH-~~~~~~aDri~v 290 (346)
|| ..+..+||+++.
T Consensus 1134 t~~~~~~~~~d~~~~ 1148 (1164)
T TIGR02169 1134 SLRSPMIEYADRAIG 1148 (1164)
T ss_pred ECcHHHHHhcceeEe
Confidence 99 556688999964
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.1e-06 Score=84.22 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=42.8
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.+|++.+|++++|+|+||+|||||+++|++..+ ++.|.|.+.|...
T Consensus 133 ~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~-----~~~gvi~~iGer~ 178 (418)
T TIGR03498 133 TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD-----ADVVVIALVGERG 178 (418)
T ss_pred eeccccCCcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEeeec
Confidence 699999999999999999999999999999998 8999998888654
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-06 Score=77.99 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=30.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 138 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I 138 (346)
.+..+++|.||||||||||+++|.++++ +..|.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~-----~~~g~~ 64 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ-----QDGELP 64 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh-----hccCCc
Confidence 4567999999999999999999999999 888883
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.9e-06 Score=87.42 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=26.7
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+||.+...-.+.|+|++|||||||++.|+..+.
T Consensus 449 ~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~ 481 (818)
T PRK13830 449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFR 481 (818)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 455554444799999999999999999988765
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.08 E-value=1e-05 Score=73.94 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=32.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-+|++|++++|++++|.||||+||||+++.++...
T Consensus 20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 66799999999999999999999999999998864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.4e-06 Score=82.03 Aligned_cols=42 Identities=14% Similarity=0.372 Sum_probs=38.0
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
+++.++.|+.++|+||+|||||||+++|+++++ +..|.+.+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-----~~~~iv~ie 178 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-----KDERIITIE 178 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-----ccccEEEEc
Confidence 457788999999999999999999999999998 888888875
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.5e-06 Score=83.08 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=43.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
++++ |.+.+|++++|+|+||+|||||+++|++..+ ++.|.|.+.|+..
T Consensus 128 iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~-----~~~gvi~~~Ger~ 175 (413)
T TIGR03497 128 IDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK-----ADINVIALIGERG 175 (413)
T ss_pred eeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccch
Confidence 5559 9999999999999999999999999999998 8999888888654
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.8e-06 Score=90.45 Aligned_cols=63 Identities=14% Similarity=0.002 Sum_probs=46.6
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHH------Hhc---------CccccCCCC----------------CceEEEEe
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVA------TTF---------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IA------rAL---------DEPts~Ld~----------------g~tviiiT 277 (346)
+...+-..| .+.++..|||||+|+++|| +++ ||||++||. +.++|+||
T Consensus 773 ~~i~~l~~g-~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiit 851 (880)
T PRK03918 773 VKLFVVYQG-KERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVS 851 (880)
T ss_pred eEEEEeCCC-CcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 333333333 3678899999999965554 454 999999984 57899999
Q ss_pred c-hhhhccccEEEEEec
Q 019066 278 H-GDLLSLTDRARIRTY 293 (346)
Q Consensus 278 H-~~~~~~aDri~v~l~ 293 (346)
| ..+...||++++ |+
T Consensus 852 h~~~~~~~~d~~~~-l~ 867 (880)
T PRK03918 852 HDEELKDAADYVIR-VS 867 (880)
T ss_pred CCHHHHHhCCeEEE-EE
Confidence 9 556678999965 76
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.4e-06 Score=81.80 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=42.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-----~~~G~i~~~~~~ 232 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-----QKTGAVREDDSK 232 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-----cceeeEEECCCC
Confidence 444666788999999999999999999999999999 999999998643
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.1e-06 Score=83.17 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=42.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++ |.+.+|++++|+|+||+|||||+++|++... ++.|.|.+.|+.
T Consensus 154 ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~-----~d~~vi~~iGer 200 (441)
T PRK09099 154 VDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ-----CDVNVIALIGER 200 (441)
T ss_pred ccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCeEEEEEEccC
Confidence 5559 9999999999999999999999999999998 888988888754
|
|
| >TIGR03496 FliI_clade1 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.8e-06 Score=82.80 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=50.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
.++-+.++..|..+ +.+ ++.+ |.+.+|++++|+|+||+|||||+++|+++.. ++.+.+...|+.
T Consensus 111 ~~~R~~~~~~~~tG--i~~---id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~-----~~~~vi~~iGer 174 (411)
T TIGR03496 111 PLKRAPIDEPLDVG--VRA---INGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE-----ADVVVVGLIGER 174 (411)
T ss_pred HHhccCcceEeeee--EEe---ecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEEecC
Confidence 35556666677544 335 4448 9999999999999999999999999999998 887776655554
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-05 Score=68.62 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|++|+|||||++.|.+-
T Consensus 25 ~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 25 PEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 35999999999999999999983
|
|
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.5e-06 Score=83.42 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=42.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++ |.+.+|++++|+|+||||||||+++|++... ++.|.+.+.|..
T Consensus 136 id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-----~~~~vi~~iG~~ 182 (422)
T TIGR02546 136 IDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS-----ADVNVIALIGER 182 (422)
T ss_pred ehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEccC
Confidence 5559 9999999999999999999999999999998 898888876544
|
|
| >PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.1e-06 Score=71.61 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++++++.+| +++|+||||+||||++.+|.-++-
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 56688888888 999999999999999999987775
|
|
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.2e-06 Score=82.96 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=41.8
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC---ceEEECceeCC
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER---AQVTYNSSVGD 146 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~---G~I~~~g~~i~ 146 (346)
|+|.+|++++|+|+||||||||+++|+++.+ ++. |.|.+.|.++.
T Consensus 170 l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~-----~d~iv~g~Igerg~ev~ 217 (455)
T PRK07960 170 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ-----ADVIVVGLIGERGREVK 217 (455)
T ss_pred ccccCCcEEEEECCCCCCccHHHHHHhCCCC-----CCEEEEEEEEECCeEHH
Confidence 9999999999999999999999999999998 765 89999998874
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.1e-06 Score=79.94 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=26.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++..++|+||+||||||++++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999985
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.6e-06 Score=71.77 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|++++|+||||||||||++.|+..+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999886
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.96 E-value=2e-05 Score=77.89 Aligned_cols=132 Identities=13% Similarity=0.108 Sum_probs=84.6
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHH-hhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccch
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRI-SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA 175 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L-~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v 175 (346)
+-|++| ++.|+|.+=-||||||++| .|.|. +. |-.|+=+ +.-+.....
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYn-Hi--pGDGRE~------------------------VVT~~~avk--- 288 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYN-HI--PGDGREF------------------------VVTDPDAVK--- 288 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccC-CC--CCCCceE------------------------EEECCCceE---
Confidence 678999 9999999999999999999 57776 22 4333222 111110000
Q ss_pred hhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHH
Q 019066 176 SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 255 (346)
Q Consensus 176 ~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~ 255 (346)
+ +.+.- .....+++.+++..+|.|.+|- ... -.+=||-.-|-..
T Consensus 289 ----------i---------------rAEDG----R~V~~vDISpFI~~LP~g~dT~-~Fs------T~~ASGSTSqAAn 332 (448)
T PF09818_consen 289 ----------I---------------RAEDG----RSVEGVDISPFINNLPGGKDTT-CFS------TENASGSTSQAAN 332 (448)
T ss_pred ----------E---------------EecCC----ceEeCccchHHHhhCCCCCCCC-ccc------ccCCCchHHHHHH
Confidence 0 00000 0123355566666667776665 322 2366888888888
Q ss_pred HHHhc---------CccccCC---------------C-----------------CCceEEEEec--hhhhccccEEEEEe
Q 019066 256 VATTF---------NCPYLSF---------------R-----------------DDKPVVVVTH--GDLLSLTDRARIRT 292 (346)
Q Consensus 256 IArAL---------DEPts~L---------------d-----------------~g~tviiiTH--~~~~~~aDri~v~l 292 (346)
|..|| ||-||+- + .|.++|+|+- .+....||+|++ |
T Consensus 333 I~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~-M 411 (448)
T PF09818_consen 333 IMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIM-M 411 (448)
T ss_pred HHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEE-e
Confidence 98888 8888880 0 1888888887 567778999964 8
Q ss_pred cCCe
Q 019066 293 YLGE 296 (346)
Q Consensus 293 ~~G~ 296 (346)
++=+
T Consensus 412 d~Y~ 415 (448)
T PF09818_consen 412 DEYR 415 (448)
T ss_pred cCcc
Confidence 7644
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.6e-06 Score=80.55 Aligned_cols=53 Identities=26% Similarity=0.238 Sum_probs=45.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCc-------EEEEEcCCCCCHHHHHHHHhhh
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTT-------SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge-------~iaIvGpnGsGKSTLl~~L~gl 125 (346)
..-+++++++++|+.... + ++.++|++++|+ .++|+|.+|+|||||+|.|.|-
T Consensus 16 ~g~~~~~~~~~~~~~~~~--~---~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 16 KGDTEALAAAVREDASTG--S---TSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred CCccccccccccCCCCcc--c---ccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 345899999999985544 4 666999999999 9999999999999999999875
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.4e-07 Score=94.25 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=30.4
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHH--hhhccCCCCCCCCceEEECc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRI--SKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L--~gl~~~~~~~p~~G~I~~~g 142 (346)
=+++|.++.|.|++|||||||..-. .|+.+ ..+.-+++..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-----~ge~~lyvs~ 58 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-----FDEPGVFVTF 58 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEE
Confidence 4789999999999999999999876 45554 3445555543
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK08472 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.2e-06 Score=81.44 Aligned_cols=49 Identities=22% Similarity=0.166 Sum_probs=43.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++++ +++.+|++++|+|+||+|||||+++|++... ++.+.|...|....
T Consensus 148 id~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~-----~~v~vi~~iGergr 196 (434)
T PRK08472 148 IDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL-----APIKVVALIGERGR 196 (434)
T ss_pred hhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC-----CCEEEEEeeCccch
Confidence 5559 9999999999999999999999999999887 77888887776643
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.8e-06 Score=89.66 Aligned_cols=51 Identities=8% Similarity=0.081 Sum_probs=43.6
Q ss_pred ccCCCCCCHHHHHHHHHHHhc-----------------CccccCCCC----------------CceEEEEec--hhhhcc
Q 019066 240 KSMEGDSDVEKQYNQIVATTF-----------------NCPYLSFRD----------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 240 ~~~~~~LSgGqrQRv~IArAL-----------------DEPts~Ld~----------------g~tviiiTH--~~~~~~ 284 (346)
.+++.+|||||+++++||+|| ||||++||+ |+||+|||| .+..++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 578899999999999999996 999999985 899999999 456677
Q ss_pred ccEEEE
Q 019066 285 TDRARI 290 (346)
Q Consensus 285 aDri~v 290 (346)
..+|.|
T Consensus 1024 ~~qi~V 1029 (1047)
T PRK10246 1024 PVQIKV 1029 (1047)
T ss_pred cceEEE
Confidence 778854
|
|
| >PRK05922 type III secretion system ATPase; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-05 Score=80.34 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=40.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++.+ |.+.+|+.++|+|+||+|||||+++|++..+ ++.|.+..-|..
T Consensus 148 ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGer 194 (434)
T PRK05922 148 IDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGER 194 (434)
T ss_pred ecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCCC
Confidence 3335 9999999999999999999999999999988 888888665543
|
|
| >PRK05688 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.8e-06 Score=81.87 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=32.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++ |.|.+|++++|+|+||+|||||+++|+|+..
T Consensus 159 ID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 159 INGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred ecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4449 9999999999999999999999999999887
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.9e-06 Score=71.92 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=28.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
|+++++..+++++ +|+|++|||||||++.+.+
T Consensus 10 ~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 10 LSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 5668999888755 9999999999999999987
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.8e-06 Score=78.13 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=38.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++|++++|+|||||||||++..|++.+. +..++|.+.+.|..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-----~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-----AQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecCcc
Confidence 5789999999999999999999999998 88889999887763
|
|
| >cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.6e-06 Score=74.45 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++||.|+||||||||++.|.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999997
|
The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.8e-06 Score=83.10 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=35.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCce
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 137 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~ 137 (346)
+++.++.+.+|.+++|||||||||||++..|++.+. ...|.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-----~~~G~ 286 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-----MRHGA 286 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-----HhcCC
Confidence 444788889999999999999999999999999987 66653
|
|
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.89 E-value=1e-05 Score=76.99 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
.++||.||||||||||+++|.+++... |.+|.|.+-+.|
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~---~~~g~V~vi~~D 101 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRW---PEHRKVELITTD 101 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhc---CCCCceEEEecc
Confidence 599999999999999999999998621 456787765544
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.8e-05 Score=70.95 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=36.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC-CCceEEECceeCC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYNSSVGD 146 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p-~~G~I~~~g~~i~ 146 (346)
++|.+++|+|+||||||||.+.|.+.+. + ..|.++++|.++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~-----~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH-----ELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-----hCCCCEEEEcCEeHH
Confidence 6789999999999999999999999775 3 3468999987764
|
|
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.8e-05 Score=68.25 Aligned_cols=40 Identities=13% Similarity=0.332 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc----eEEECce
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERA----QVTYNSS 143 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G----~I~~~g~ 143 (346)
-.++|+|++|||||||++.|.+..... ..|+.| .+.++|.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~~~i~~~~~ 58 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNIKTVQSDGF 58 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcceEEEEECCE
Confidence 469999999999999999999963211 116777 5555443
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.2e-05 Score=88.83 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=42.1
Q ss_pred EEEeeeEEEeCC--CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHh----hhccCCCCCCC-CceEEECce
Q 019066 71 TDAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS----KVFENDKFASE-RAQVTYNSS 143 (346)
Q Consensus 71 l~~~~l~~~y~~--~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~----gl~~~~~~~p~-~G~I~~~g~ 143 (346)
|.++|+. +|++ ... .-|+|. +| +++|+|||||||||++.+|. |..+ |. .|.+++.+.
T Consensus 6 l~i~g~r-Sf~~~~~~~-------~~I~F~--~~-~~~I~G~NGaGKTTil~ai~~al~G~~~-----~~~~g~~~i~~~ 69 (1311)
T TIGR00606 6 MSILGVR-SFGIEDKDK-------QIIDFF--SP-LTILVGPNGAGKTTIIECLKYICTGDFP-----PGTKGNTFVHDP 69 (1311)
T ss_pred eeeecee-cCCCccccc-------eeeecc--cc-eEEEECCCCCCHHHHHHHHHHHhcCCCC-----CCCCCceEecCC
Confidence 6667654 5753 111 115554 55 99999999999999999994 8887 64 688888765
Q ss_pred eC
Q 019066 144 VG 145 (346)
Q Consensus 144 ~i 145 (346)
++
T Consensus 70 ~~ 71 (1311)
T TIGR00606 70 KV 71 (1311)
T ss_pred Cc
Confidence 54
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.85 E-value=4.4e-05 Score=85.48 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=37.1
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 143 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~ 143 (346)
++++..++++++|+|++|+|||||++.+.+-+.. ...|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~----~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR----QFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhh----cCCeEEEeecc
Confidence 5678889999999999999999999999665541 45799988763
|
syringae 6; Provisional |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.2e-05 Score=70.46 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999875
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.1e-05 Score=89.01 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=42.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
+.+-.|++.+| +++|+|+|||||||++++|++++. |..|.+.|++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~-----~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc-----CCCCeEEECCcc
Confidence 55578999887 999999999999999999999998 888999998765
|
|
| >PRK08972 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.8e-05 Score=78.89 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=32.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.+ |.+.+|++++|+|+||+|||||+++|++...
T Consensus 153 ID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 153 INAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 4447 9999999999999999999999999999877
|
|
| >cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes | Back alignment and domain information |
|---|
Probab=97.79 E-value=2e-05 Score=74.36 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=28.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN 141 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~ 141 (346)
+++|+|+||||||||++.|.++++ +..|.+...
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~-----~~~~~vi~~ 33 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG-----SDLVTVICL 33 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC-----CCceEEEEC
Confidence 589999999999999999999998 776655543
|
This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. |
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=1e-05 Score=75.85 Aligned_cols=56 Identities=16% Similarity=0.342 Sum_probs=40.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.+++..+.+..+.....+..|.+++| +++|+.+.|+||+|+|||+|+++|+....
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 355666666644321112233566999 99999999999999999999999976654
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.8e-05 Score=70.64 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+||||||||||.++|.+++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999884
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 5e-11
Identities = 56/380 (14%), Positives = 119/380 (31%), Gaps = 77/380 (20%)
Query: 3 GEKTTSRFFTPGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQ 62
E+ +F EE++ F + + + ++QR R ++ + Q + +
Sbjct: 75 QEEMVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR--LYNDN-QVFAK 128
Query: 63 L-RTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121
+R+ + +L P + + G+ GSGK+ +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNV-LIDGV------------------LGSGKTWVAL- 168
Query: 122 ISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS-DDASDNI 179
V + K + ++ + + E + D S D S NI
Sbjct: 169 --DVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 180 NMIKLWIMEGVRHGELVIRRSDSSSL------RNRMRCKAHKIGCEPSVIRKVNFVIFVV 233
+ I +R L+ + + L +N A + C+ + + V +
Sbjct: 224 KLRIHSIQAELRR--LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 234 DGLAVLK-SMEGDSDV--EKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLL------SL 284
S++ S + ++ +C D P V+T S+
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSIIAESI 337
Query: 285 TDR-ARIRTY-------LGELLG-----IPPA--KQIFD----IPESSD-PENELIIV-- 322
D A + L ++ + PA +++FD P S+ P L ++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 323 DMLRYCLEHADRNLSCKSCA 342
D+++ + L S
Sbjct: 398 DVIKSDVMVVVNKLHKYSLV 417
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-06
Identities = 52/374 (13%), Positives = 107/374 (28%), Gaps = 128/374 (34%)
Query: 37 RDSWDSLVDQRRRDAVFREVLQSYD-QLR----TRIGSLTDAKNKILSYTPGAWIENVGG 91
+ ++ + +++ + TR +TD + + T + +
Sbjct: 251 LNVQNA------------KAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMT 297
Query: 92 MT-------LSDY------DVP---KTTSLLLIGPKGSGKSSLVNRIS--KVFENDKFAS 133
+T L Y D+P TT+ + + K DK +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 134 ERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS---DNIN-----MIKLW 185
SS+ N + R + D S + + + +W
Sbjct: 358 -----IIESSL----------------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 186 ----------IMEGVRHGELVIRRSDSS-----SLRNRMRCKAHKIGCEPSVIRKVNFVI 230
++ + LV ++ S S+ ++ K E ++ R +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN---EYALHRSI---- 449
Query: 231 FVVDGLAVLKSMEGDS---DVEKQY--NQIV-----------ATTFNCPYLSF------- 267
VD + K+ + D QY + I T F +L F
Sbjct: 450 --VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 268 RDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDMLRY 327
R D + L +L ++ Y I D +DP+ E ++ +L +
Sbjct: 508 RHDSTAWNASGSILNTLQQ---LKFYK---------PYICD----NDPKYERLVNAILDF 551
Query: 328 CLEHADRNLSCKSC 341
+ + + K
Sbjct: 552 LPKIEENLICSKYT 565
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 5e-05
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 18/106 (16%)
Query: 105 LLLIGPKGSGKSSLVNRI--SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNS 162
+L++G G GKSS VN I +V F SE + + R +
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRP-------------VMVSRSRAGFT 88
Query: 163 FSLYDTRSLSDDASDN---INMIKLWIMEGVRHGELVIRRSDSSSL 205
++ DT L + N +N+IK ++++ L + R D+ +
Sbjct: 89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV 134
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.95 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.94 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.93 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.93 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.93 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.88 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.87 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.85 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.82 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.81 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.8 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.78 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.78 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.77 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.77 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.75 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.75 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.74 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.7 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.7 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.67 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.66 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.61 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.6 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.58 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.58 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.58 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.57 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.57 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.56 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.56 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.55 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.53 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.53 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.52 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.52 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.5 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.49 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.48 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.48 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.43 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.42 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.41 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.41 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.39 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.39 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.38 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.38 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.38 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.37 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.36 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.36 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.35 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.34 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.34 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.33 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.31 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.3 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.28 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.26 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.24 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.22 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.22 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.22 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.2 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.2 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.17 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.16 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.15 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.08 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.08 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.07 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.03 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.01 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.98 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.96 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.95 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.94 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.93 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.93 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.92 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.91 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.89 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.83 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.83 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.82 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.73 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.72 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.68 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.65 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.64 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.62 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.62 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.6 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.51 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.5 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.41 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.4 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.4 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.39 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.39 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.39 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.34 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.34 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.29 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.27 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.22 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.2 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.19 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.19 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.18 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.17 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.17 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.16 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.15 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.15 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.14 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.11 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.1 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.09 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.07 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.01 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.96 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.96 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.95 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.93 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.92 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.88 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.88 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.86 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.82 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.82 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.8 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.77 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.77 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.75 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.71 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.71 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.71 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.66 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.65 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.63 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.62 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.59 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.54 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.54 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.51 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.48 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.48 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.45 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.43 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.41 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.4 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.4 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.37 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.34 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.34 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.31 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.25 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.25 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.25 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.24 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.21 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 97.2 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.19 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.14 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.13 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.12 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.06 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.03 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.0 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.0 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.99 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.97 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.96 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.95 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.93 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.91 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.91 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.91 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.86 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.86 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.85 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.85 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.84 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.84 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.83 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.83 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.82 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.82 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.82 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.81 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.81 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.81 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.8 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.79 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.78 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.77 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.76 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.75 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.74 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.74 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.73 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.73 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.69 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.69 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.66 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.65 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.65 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.64 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.64 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.62 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.62 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.6 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.6 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.6 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.59 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.57 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.57 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.56 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.56 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.55 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.54 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.54 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.53 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.53 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.53 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 96.52 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.51 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.5 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.5 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.5 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.5 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.49 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.49 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.48 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.48 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.46 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.46 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.46 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.46 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.45 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.44 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.44 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 96.43 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 96.42 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.41 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.41 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.4 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.4 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.38 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.38 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.37 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.37 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.36 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.36 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.35 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.35 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.34 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.34 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.34 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.33 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 96.33 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.33 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.33 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.33 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.32 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.32 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.31 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.3 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.29 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.29 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.29 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.28 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.28 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.28 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.28 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.28 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.28 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.28 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.27 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.26 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.25 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.24 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.24 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.23 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.23 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.22 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.22 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.21 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.21 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.2 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.2 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.19 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 96.18 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.17 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.17 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.16 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.16 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.16 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.14 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.13 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.12 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.11 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.11 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 96.11 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.1 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 96.1 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.1 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.09 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.09 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.08 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.08 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.06 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.05 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 96.04 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.04 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.04 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 96.03 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.03 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.02 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 96.01 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.01 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 96.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 96.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.0 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.0 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.99 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.99 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.99 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.98 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.98 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.97 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.96 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.96 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.95 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.95 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.92 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.91 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.9 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.88 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.88 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.87 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.86 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.86 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.82 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.81 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.8 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.78 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.78 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.77 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.77 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.74 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.74 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.73 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.71 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.7 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.69 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.69 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.65 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.63 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.62 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.62 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.61 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.6 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.6 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.59 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.59 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.58 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.55 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.55 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.54 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.54 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.53 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.52 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.5 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.48 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.47 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.47 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.46 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.46 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.42 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.4 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.39 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.39 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.35 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.32 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 95.22 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 95.22 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.16 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 95.16 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 95.15 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.1 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.07 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 95.06 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.03 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 95.0 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.98 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 94.96 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.96 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.89 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.86 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 94.82 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.81 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 94.8 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 94.78 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.77 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 94.75 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.76 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.74 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 94.74 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 94.72 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.7 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.69 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.69 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 94.58 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.57 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.53 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 94.43 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.42 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.41 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 94.39 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 94.36 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.35 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.27 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 94.27 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 94.27 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.21 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.19 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.17 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 94.15 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 94.14 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.11 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 94.1 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.09 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 94.04 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.03 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 94.02 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 94.02 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-47 Score=366.68 Aligned_cols=216 Identities=14% Similarity=0.151 Sum_probs=175.0
Q ss_pred CCCcEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 67 IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 67 ~~~~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
..++|+++||+++|+.+. .+.+ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~a---L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~i 92 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQEL 92 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEeEEEEeCCCCCCeEE---EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEEC
Confidence 356899999999996532 2336 666999999999999999999999999999999999 9999999999998
Q ss_pred CCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
...... .....|+.++|++|++..+..+ |.+|+. ++.... ..+..+.++++.++|+.+||.+
T Consensus 93 ~~~~~~-~~~~~r~~Ig~v~Q~~~l~~~~TV~env~-----------~~~~~~-~~~~~~~~~~v~~lL~~vgL~~---- 155 (366)
T 3tui_C 93 TTLSES-ELTKARRQIGMIFQHFNLLSSRTVFGNVA-----------LPLELD-NTPKDEVKRRVTELLSLVGLGD---- 155 (366)
T ss_dssp SSCCHH-HHHHHHTTEEEECSSCCCCTTSCHHHHHH-----------HHHHHS-CCCHHHHHHHHHHHHHHHTCGG----
T ss_pred CcCCHH-HHHHHhCcEEEEeCCCccCCCCCHHHHHH-----------HHHHhc-CCCHHHHHHHHHHHHHHcCCch----
Confidence 622111 1111134677888877665544 555554 333221 2345667789999999999987
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH 278 (346)
..++++.+|||||||||+||||| ||||++||+ |+|||+|||
T Consensus 156 -------------~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTH 222 (366)
T 3tui_C 156 -------------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222 (366)
T ss_dssp -------------GTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 56999999999999999999999 999999984 899999999
Q ss_pred --hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 279 --GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 279 --~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+.+.++||||++ |++|++++.|++++++.+|.+++++.++..
T Consensus 223 dl~~~~~~aDrv~v-l~~G~iv~~g~~~ev~~~p~~~~~~~~~~~ 266 (366)
T 3tui_C 223 EMDVVKRICDCVAV-ISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266 (366)
T ss_dssp CHHHHHHHCSEEEE-EETTEEEECCBHHHHHSSCCSHHHHHHHHH
T ss_pred CHHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCcHHHHHHHhh
Confidence 578899999975 999999999999999999999888887765
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=364.53 Aligned_cols=205 Identities=12% Similarity=0.149 Sum_probs=170.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+|+|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 3 ~l~~~~l~~~yg~~---~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~-- 69 (381)
T 3rlf_A 3 SVQLQNVTKAWGEV---VV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND-- 69 (381)
T ss_dssp CEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred EEEEEeEEEEECCE---EE---EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCC--
Confidence 59999999999753 24 777999999999999999999999999999999999 999999999999861
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...+..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 70 ----~~~~~r~ig~VfQ~~~l~p~l----------tV~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~--------- 125 (381)
T 3rlf_A 70 ----TPPAERGVGMVFQSYALYPHL----------SVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAH--------- 125 (381)
T ss_dssp ----CCGGGSCEEEECTTCCCCTTS----------CHHHHHTHHHHHT-TCCHHHHHHHHHHHHHHTTCGG---------
T ss_pred ----CCHHHCCEEEEecCCcCCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 112234567777776655544 4444444443322 2345667889999999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
+++++|.+|||||||||+||||| ||||++||. |+|+|+||| +.+
T Consensus 126 --------~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea 197 (381)
T 3rlf_A 126 --------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 197 (381)
T ss_dssp --------GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH
T ss_pred --------hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 57999999999999999999999 999999984 899999999 578
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||||++ |++|+|++.|++++++..|.+.++..++.
T Consensus 198 ~~~aDri~v-l~~G~i~~~g~~~~l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 198 MTLADKIVV-LDAGRVAQVGKPLELYHYPADRFVAGFIG 235 (381)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHhCCEEEE-EECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence 899999975 99999999999999999998877666654
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-47 Score=360.13 Aligned_cols=220 Identities=14% Similarity=0.171 Sum_probs=174.2
Q ss_pred hHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHH
Q 019066 50 DAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 50 ~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
..+++++++.+++..+. ....|+++||+|+|+++.. + |+||||+|++||++||+||||||||||+++
T Consensus 25 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~--v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~l 99 (306)
T 3nh6_A 25 MENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE--T---LQDVSFTVMPGQTLALVGPSGAGKSTILRL 99 (306)
T ss_dssp HHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCE--E---EEEEEEEECTTCEEEEESSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCc--e---eeeeeEEEcCCCEEEEECCCCchHHHHHHH
Confidence 46678887766553221 1235999999999975444 4 777999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCC
Q 019066 122 ISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSD 201 (346)
Q Consensus 122 L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~ 201 (346)
|+|+++ |++|+|.++|+++.... . ...|+.++|++|++..|. .+|.+|+.++...
T Consensus 100 l~gl~~-----p~~G~I~i~G~~i~~~~---~-~~~r~~i~~v~Q~~~lf~-----------~Tv~eNi~~~~~~----- 154 (306)
T 3nh6_A 100 LFRFYD-----ISSGCIRIDGQDISQVT---Q-ASLRSHIGVVPQDTVLFN-----------DTIADNIRYGRVT----- 154 (306)
T ss_dssp HTTSSC-----CSEEEEEETTEETTSBC---H-HHHHHTEEEECSSCCCCS-----------EEHHHHHHTTSTT-----
T ss_pred HHcCCC-----CCCcEEEECCEEcccCC---H-HHHhcceEEEecCCccCc-----------ccHHHHHHhhccc-----
Confidence 999999 99999999999986211 0 011335566666655443 3555555554321
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---
Q 019066 202 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD--- 269 (346)
Q Consensus 202 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~--- 269 (346)
...+++.++++.+++.+.+..+|+||+|.++++ +.+||||||||++||||| ||||++||.
T Consensus 155 --~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~------g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~ 226 (306)
T 3nh6_A 155 --AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGER------GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNE 226 (306)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTT------SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHH
T ss_pred --CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCC------cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 113567788999999999999999999999988 459999999999999999 999999984
Q ss_pred ------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
++|+|+||| ..+.. ||+|++ |++|+|++.|++++++..
T Consensus 227 ~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~v-l~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 227 RAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILV-IKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEE-EECCEEEEECCHHHHHhc
Confidence 899999999 45655 999965 999999999999998864
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=361.01 Aligned_cols=209 Identities=12% Similarity=0.188 Sum_probs=168.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+|+|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 4 ~l~i~~ls~~y~~~~---~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~~~~ 72 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTP---V---LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIFSKN 72 (359)
T ss_dssp CEEEEEEEEEETTEE---E---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEESSS
T ss_pred EEEEEeEEEEECCEE---E---EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECcccc
Confidence 699999999997532 4 777999999999999999999999999999999999 99999999999973100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
......++.++|++|+...+..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 73 --~~~~~~~r~ig~vfQ~~~l~p~l----------tV~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~--------- 130 (359)
T 3fvq_A 73 --TNLPVRERRLGYLVQEGVLFPHL----------TVYRNIAYGLGNG-KGRTAQERQRIEAMLELTGISE--------- 130 (359)
T ss_dssp --CBCCGGGSCCEEECTTCCCCTTS----------CHHHHHHTTSTTS-SCCSHHHHHHHHHHHHHHTCGG---------
T ss_pred --cccchhhCCEEEEeCCCcCCCCC----------CHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCCch---------
Confidence 01111234566666665444332 5666666665422 2334667788999999999988
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+||| +.+
T Consensus 131 --------~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea 202 (359)
T 3fvq_A 131 --------LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA 202 (359)
T ss_dssp --------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 67999999999999999999999 999999984 899999999 578
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+||||++ |++|+|++.|++++++.+|...+...++.
T Consensus 203 ~~~aDri~v-l~~G~i~~~g~~~el~~~p~~~~~a~~~g 240 (359)
T 3fvq_A 203 LQYADRIAV-MKQGRILQTASPHELYRQPADLDAALFIG 240 (359)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSCSCHHHHHHHS
T ss_pred HHHCCEEEE-EECCEEEEEeCHHHHHhCcccHHHHHhcc
Confidence 899999975 99999999999999999988766555443
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=343.46 Aligned_cols=203 Identities=13% Similarity=0.206 Sum_probs=160.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|+++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 5 ~~~l~i~~ls~~y~~~~~--~---L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~~ 74 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTH--A---LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPIDY 74 (275)
T ss_dssp CEEEEEEEEEEECTTSCE--E---EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCC
T ss_pred CcEEEEEEEEEEECCCCe--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECCc
Confidence 357999999999976543 4 777999999999999999999999999999999999 999999999999841
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .. .....++.++|++|++... ++..+|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 75 ~-~~-~~~~~~~~ig~v~Q~~~~~---------~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~------- 135 (275)
T 3gfo_A 75 S-RK-GIMKLRESIGIVFQDPDNQ---------LFSASVYQDVSFGAVNM-KLPEDEIRKRVDNALKRTGIEH------- 135 (275)
T ss_dssp S-HH-HHHHHHHSEEEECSSGGGT---------CCSSBHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred c-cc-cHHHHhCcEEEEEcCcccc---------cccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 0 00 0111134567777765210 11124444444443221 2335666788999999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+.++++.+||||||||++||||| ||||++||+ |+|||+||| +
T Consensus 136 ----------~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 136 ----------LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp ----------GTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred ----------hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 56899999999999999999999 999999984 889999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
.+..+||||++ |++|++++.|++++++..+
T Consensus 206 ~~~~~~drv~~-l~~G~i~~~g~~~~~~~~~ 235 (275)
T 3gfo_A 206 IVPLYCDNVFV-MKEGRVILQGNPKEVFAEK 235 (275)
T ss_dssp SGGGGCSEEEE-EETTEEEEEECHHHHTHHH
T ss_pred HHHHhCCEEEE-EECCEEEEECCHHHHhcCH
Confidence 78889999965 9999999999999988653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=351.71 Aligned_cols=204 Identities=15% Similarity=0.211 Sum_probs=167.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~~~~---v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~-- 69 (362)
T 2it1_A 3 EIKLENIVKKFGNFT---A---LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVTE-- 69 (362)
T ss_dssp CEEEEEEEEESSSSE---E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred EEEEEeEEEEECCEE---E---EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCc--
Confidence 599999999996532 4 777999999999999999999999999999999999 999999999999851
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++.++|++|+...+..+ |.+|+. ++.... ..+..+.++++.++++.++|.+
T Consensus 70 ----~~~~~r~ig~v~Q~~~l~~~ltv~eni~-----------~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 125 (362)
T 2it1_A 70 ----LPPKDRNVGLVFQNWALYPHMTVYKNIA-----------FPLELR-KAPREEIDKKVREVAKMLHIDK-------- 125 (362)
T ss_dssp ----SCGGGTTEEEECTTCCCCTTSCHHHHHH-----------HHHHHT-TCCHHHHHHHHHHHHHHTTCTT--------
T ss_pred ----CCHhHCcEEEEecCcccCCCCCHHHHHH-----------HHHHhc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 111234577777776666554 555554 332211 1234556788999999999988
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+||| +.
T Consensus 126 ---------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 126 ---------LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp ---------CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred ---------HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 56999999999999999999999 999999984 899999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+..+||||++ |++|+|++.|++++++.+|.+.++..++.
T Consensus 197 a~~~adri~v-l~~G~i~~~g~~~~~~~~p~~~~~~~~~g 235 (362)
T 2it1_A 197 ALAMADRIAV-IREGEILQVGTPDEVYYKPKYKFVGGFLG 235 (362)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHSB
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCccchHHHHHcC
Confidence 8899999975 99999999999999999887766555543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=350.80 Aligned_cols=206 Identities=14% Similarity=0.179 Sum_probs=168.5
Q ss_pred CCcEEEeeeEEEe-CCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y-~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||+++| ++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 12 ~~~l~~~~l~~~y~g~~~---v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~ 80 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGAR---S---VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRVT 80 (355)
T ss_dssp CEEEEEEEEEECCTTSTT---C---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECT
T ss_pred CceEEEEEEEEEEcCCCE---E---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECC
Confidence 4579999999999 6533 3 777999999999999999999999999999999999 99999999999985
Q ss_pred CcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
. ....++.++|++|+...+..+ |.+|+. ++.... ..+..+.++++.++++.++|.+
T Consensus 81 ~------~~~~~r~ig~v~Q~~~l~~~ltv~eni~-----------~~l~~~-~~~~~~~~~~v~~~l~~~gL~~----- 137 (355)
T 1z47_A 81 D------LPPQKRNVGLVFQNYALFQHMTVYDNVS-----------FGLREK-RVPKDEMDARVRELLRFMRLES----- 137 (355)
T ss_dssp T------CCGGGSSEEEECGGGCCCTTSCHHHHHH-----------HHHHHT-TCCHHHHHHHHHHHHHHTTCGG-----
T ss_pred c------CChhhCcEEEEecCcccCCCCCHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHcCChh-----
Confidence 1 111234567777776665544 555544 433211 1234556788999999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+|||
T Consensus 138 ------------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 138 ------------YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp ------------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred ------------HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 57999999999999999999999 999999984 899999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+.+..+||||++ |++|+|++.|++++++.+|...++..++.
T Consensus 206 ~~~a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~g 247 (355)
T 1z47_A 206 QEEALEVADRVLV-LHEGNVEQFGTPEEVYEKPGTLFVASFIG 247 (355)
T ss_dssp HHHHHHHCSEEEE-EETTEEEEEECHHHHHHSCSSHHHHHHTT
T ss_pred HHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 578889999975 99999999999999999887766555544
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=339.15 Aligned_cols=211 Identities=16% Similarity=0.116 Sum_probs=163.6
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC-
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG- 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~- 147 (346)
++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~l~i~~l~~~y~~~-~--v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGH-E--V---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLV 73 (262)
T ss_dssp CCEEEEEEEEEETTE-E--E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEE
T ss_pred ceEEEeeEEEEECCE-E--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccc
Confidence 479999999999753 2 4 777999999999999999999999999999999999 999999999998741
Q ss_pred ----c----ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCC
Q 019066 148 ----T----YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGC 218 (346)
Q Consensus 148 ----~----~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l 218 (346)
. .........++.++|++|+...+..+ |.+|+.+... . ....+....++++.++++.+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~----------~-~~~~~~~~~~~~~~~~l~~~~L 142 (262)
T 1b0u_A 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI----------Q-VLGLSKHDARERALKYLAKVGI 142 (262)
T ss_dssp ECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHH----------H-TTCCCHHHHHHHHHHHHHHTTC
T ss_pred ccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHH----------H-hcCCCHHHHHHHHHHHHHHcCC
Confidence 0 00000001123567777776555443 5555543210 1 1112234556788999999999
Q ss_pred Ccccccccceeeeeechhhh-cccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------Cce
Q 019066 219 EPSVIRKVNFVIFVVDGLAV-LKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKP 272 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~-~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~t 272 (346)
.+ . +++++.+||||||||++||||| ||||++||+ |+|
T Consensus 143 ~~-----------------~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~t 205 (262)
T 1b0u_A 143 DE-----------------RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT 205 (262)
T ss_dssp CH-----------------HHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred Cc-----------------hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCE
Confidence 88 5 6899999999999999999999 999999984 899
Q ss_pred EEEEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 273 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 273 viiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
||+||| +.+..+|||+++ |++|++++.|++++++..+..++++.++
T Consensus 206 vi~vtHd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 253 (262)
T 1b0u_A 206 MVVVTHEMGFARHVSSHVIF-LHQGKIEEEGDPEQVFGNPQSPRLQQFL 253 (262)
T ss_dssp EEEECSCHHHHHHHCSEEEE-EETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred EEEEeCCHHHHHHhCCEEEE-EECCEEEEeCCHHHHHhCcchHHHHHHH
Confidence 999999 567889999964 9999999999999998877665544443
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=351.25 Aligned_cols=205 Identities=13% Similarity=0.180 Sum_probs=166.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~~~~---v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~-- 69 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVK---A---VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVND-- 69 (359)
T ss_dssp CEEEEEEEEEETTEE---E---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred EEEEEEEEEEECCEE---E---EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCC--
Confidence 599999999997532 4 777999999999999999999999999999999999 999999999999851
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...+..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 70 ----~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~--------- 125 (359)
T 2yyz_A 70 ----IPPKYREVGMVFQNYALYPHM----------TVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDN--------- 125 (359)
T ss_dssp ----SCGGGTTEEEECSSCCCCTTS----------CHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGG---------
T ss_pred ----CChhhCcEEEEecCcccCCCC----------CHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 111234567777766555443 4555555543221 1123344578899999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
++++++.+|||||||||+||||| ||||++||. |.|+|+||| +.+
T Consensus 126 --------~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 197 (359)
T 2yyz_A 126 --------LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA 197 (359)
T ss_dssp --------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 57999999999999999999999 999999984 899999999 578
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+|||+++ |++|+|++.|++++++.+|.+.++..++.
T Consensus 198 ~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~g 235 (359)
T 2yyz_A 198 MTMASRIAV-FNQGKLVQYGTPDEVYDSPKNMFVASFIG 235 (359)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred HHhCCEEEE-EECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 889999975 99999999999999999887766555543
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-45 Score=338.53 Aligned_cols=207 Identities=14% Similarity=0.187 Sum_probs=162.2
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. .
T Consensus 23 ~~l~i~~l~~~y~~~~---v---L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~-~ 90 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLE---V---LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLK-A 90 (263)
T ss_dssp CSEEEEEEEEEETTEE---E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESS-S
T ss_pred heEEEEeEEEEECCEE---E---EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECC-C
Confidence 3799999999996532 4 777999999999999999999999999999999999 99999999999874 1
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
... .....++.++|++|+...+..+ |.+|+.+ +............++++.++++.++|.+
T Consensus 91 ~~~-~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~-----------~~~~~~~~~~~~~~~~~~~~l~~~~L~~------- 151 (263)
T 2olj_A 91 KDT-NLNKVREEVGMVFQRFNLFPHMTVLNNITL-----------APMKVRKWPREKAEAKAMELLDKVGLKD------- 151 (263)
T ss_dssp TTC-CHHHHHHHEEEECSSCCCCTTSCHHHHHHH-----------HHHHTSCCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred ccc-cHHHHhCcEEEEeCCCcCCCCCCHHHHHHH-----------HHHHHcCCCHHHHHHHHHHHHHHCCCch-------
Confidence 100 1011133567777776555443 5555543 2110111223445678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||+ |+|||+||| +.
T Consensus 152 ----------~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 221 (263)
T 2olj_A 152 ----------KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGF 221 (263)
T ss_dssp ----------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 56899999999999999999999 999999984 899999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 317 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 317 (346)
+.++||++++ |++|++++.|++++++..+..++++.
T Consensus 222 ~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~~~~~~ 257 (263)
T 2olj_A 222 AREVGDRVLF-MDGGYIIEEGKPEDLFDRPQHERTKA 257 (263)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCCSHHHHH
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhCcccHHHHH
Confidence 7889999964 99999999999999988766554443
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=349.54 Aligned_cols=212 Identities=14% Similarity=0.208 Sum_probs=168.0
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++... .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 3 ~l~i~~l~~~y~~~~~-~v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKV-VA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEEGGGTE-EE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEETT
T ss_pred EEEEEeEEEEECCEee-ee---EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEECcccc
Confidence 6999999999975331 03 778999999999999999999999999999999999 99999999999874100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......++.++|++|+...+..+ +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 74 -~~~~~~~~r~ig~v~Q~~~l~~~l----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~--------- 132 (353)
T 1oxx_K 74 -KLIVPPEDRKIGMVFQTWALYPNL----------TAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHH--------- 132 (353)
T ss_dssp -EESSCGGGSCEEEEETTSCCCTTS----------CHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGG---------
T ss_pred -cccCChhhCCEEEEeCCCccCCCC----------CHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch---------
Confidence 000111234566666665554433 5555665554322 2234556788999999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+||| +.+
T Consensus 133 --------~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~ 204 (353)
T 1oxx_K 133 --------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI 204 (353)
T ss_dssp --------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 56999999999999999999999 999999985 899999999 578
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..+|||+++ |++|+|++.|++++++.+|...++..++.
T Consensus 205 ~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~g 242 (353)
T 1oxx_K 205 FAIADRVGV-LVKGKLVQVGKPEDLYDNPVSIQVASLIG 242 (353)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSCSSHHHHHHHS
T ss_pred HHhCCEEEE-EECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 889999975 99999999999999999887766555554
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=351.04 Aligned_cols=210 Identities=14% Similarity=0.152 Sum_probs=167.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~y~~~~---v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~~ 71 (372)
T 1g29_1 3 GVRLVDVWKVFGEVT---A---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADPE 71 (372)
T ss_dssp EEEEEEEEEEETTEE---E---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEGG
T ss_pred EEEEEeEEEEECCEE---E---EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECcccc
Confidence 599999999996532 4 777999999999999999999999999999999999 99999999999874100
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
........++.++|++|+...+..+ |.+|+. ++.... ..+..+.++++.++++.++|.+
T Consensus 72 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~-----------~~~~~~-~~~~~~~~~~v~~~l~~~~L~~-------- 131 (372)
T 1g29_1 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA-----------FPLKLR-KVPRQEIDQRVREVAELLGLTE-------- 131 (372)
T ss_dssp GTEECCGGGSSEEEECSCCCCCTTSCHHHHHH-----------HHHHHT-TCCHHHHHHHHHHHHHHHTCGG--------
T ss_pred ccccCCHhHCCEEEEeCCCccCCCCCHHHHHH-----------HHHHHc-CCCHHHHHHHHHHHHHHCCCch--------
Confidence 0000111234577777776665544 555554 433211 1234556788999999999987
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+||| +.
T Consensus 132 ---------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 132 ---------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp ---------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred ---------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 57999999999999999999999 999999984 899999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+..+|||+++ |++|+|++.|++++++.+|.+.++..++.
T Consensus 203 a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~~~~~g 241 (372)
T 1g29_1 203 AMTMGDRIAV-MNRGVLQQVGSPDEVYDKPANTFVAGFIG 241 (372)
T ss_dssp HHHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred HHHhCCEEEE-EeCCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 8889999975 99999999999999999887766555543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=351.02 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=163.8
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
.+|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~y~~~~---v---l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~- 77 (372)
T 1v43_A 10 VEVKLENLTKRFGNFT---A---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY- 77 (372)
T ss_dssp CCEEEEEEEEEETTEE---E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT-
T ss_pred eeEEEEEEEEEECCEE---E---EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCC-
Confidence 3699999999997532 4 777999999999999999999999999999999999 999999999999851
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
....++.++|++|+. .+++. +|.+|+.++.... ..+..+.++++.++++.++|.+
T Consensus 78 -----~~~~~r~ig~v~Q~~-----------~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~------- 133 (372)
T 1v43_A 78 -----LPPKDRNISMVFQSY-----------AVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEE------- 133 (372)
T ss_dssp -----SCGGGGTEEEEEC-----------------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred -----CChhhCcEEEEecCc-----------ccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChh-------
Confidence 111123455555554 44443 6667776664322 2234556788999999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
++++++.+|||||||||+||||| ||||++||. |.|+|+||| +
T Consensus 134 ----------~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 134 ----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 203 (372)
T ss_dssp ----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred ----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 57999999999999999999999 999999984 899999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
.+..+||||++ |++|+|++.|++++++.+|...++..++.
T Consensus 204 ~a~~~adri~v-l~~G~i~~~g~~~~l~~~p~~~~~a~~~g 243 (372)
T 1v43_A 204 EAMTMGDRIAV-MNRGQLLQIGSPTEVYLRPNSVFVATFIG 243 (372)
T ss_dssp HHHHHCSEEEE-EETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHHhCCEEEE-EECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 78889999965 99999999999999999887766555543
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-44 Score=345.12 Aligned_cols=201 Identities=13% Similarity=0.205 Sum_probs=165.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|++. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~--~-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~-- 66 (348)
T 3d31_A 1 MIEIESLSRKWKNF--S-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTD-- 66 (348)
T ss_dssp CEEEEEEEEECSSC--E-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEECCE--E-----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCC--
Confidence 58999999999764 3 888999999999999999999999999999999999 999999999999851
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++.++|++|+...+..+ |.+|+.+ +....+ .+.. +++.++++.++|.+
T Consensus 67 ----~~~~~r~ig~v~Q~~~l~~~ltv~enl~~-----------~~~~~~-~~~~---~~v~~~l~~~~L~~-------- 119 (348)
T 3d31_A 67 ----LSPEKHDIAFVYQNYSLFPHMNVKKNLEF-----------GMRMKK-IKDP---KRVLDTARDLKIEH-------- 119 (348)
T ss_dssp ----SCHHHHTCEEECTTCCCCTTSCHHHHHHH-----------HHHHHC-CCCH---HHHHHHHHHTTCTT--------
T ss_pred ----CchhhCcEEEEecCcccCCCCCHHHHHHH-----------HHHHcC-CCHH---HHHHHHHHHcCCch--------
Confidence 111134567777776666554 5555543 332111 1122 67889999999988
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
++++++.+|||||||||+||||| ||||++||. |+|+|+||| ++
T Consensus 120 ---------~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 120 ---------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp ---------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred ---------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 57999999999999999999999 999999984 899999999 56
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELII 321 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~ 321 (346)
+..+|||+++ |++|++++.|++++++.+|...++..++..
T Consensus 191 ~~~~adri~v-l~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 230 (348)
T 3d31_A 191 ARIMADRIAV-VMDGKLIQVGKPEEIFEKPVEGRVASFVGF 230 (348)
T ss_dssp HHHHCSEEEE-ESSSCEEEEECHHHHHSSCCTTHHHHHHCS
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhCcccHHHHHhcCC
Confidence 8899999965 999999999999999999988777666653
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=327.17 Aligned_cols=202 Identities=18% Similarity=0.163 Sum_probs=153.6
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+++|+++. ...+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~---L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEEEEEEeCCCCcceee---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence 589999999997543 1225 777999999999999999999999999999999999 9999999999998621
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
...+.....++.++|++|++..+..+ |.+|+ .++.... ......+..+++.++++.+++.+.
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---- 137 (235)
T 3tif_A 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENV-----------ELPLIFKYRGAMSGEERRKRALECLKMAELEER---- 137 (235)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCTTSCHHHHH-----------HHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG----
T ss_pred CHHHHHHHhhccEEEEecCCccCCCCcHHHHH-----------HHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh----
Confidence 11111111233467777776555443 55554 4332211 122345667889999999999862
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG 279 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~ 279 (346)
..++++.+||||||||++||||| ||||++||+ |+|+|+|||+
T Consensus 138 ------------~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 138 ------------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp ------------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred ------------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 24889999999999999999999 999999984 8999999992
Q ss_pred -hhhccccEEEEEecCCeEeecCCccccc
Q 019066 280 -DLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 280 -~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
.+..+|||+++ |++|++++.++++++.
T Consensus 206 ~~~~~~~d~i~~-l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 206 INVARFGERIIY-LKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHTTSSEEEE-EETTEEEEEEECC---
T ss_pred HHHHHhCCEEEE-EECCEEEEEcChhhhc
Confidence 35678999965 9999999998877653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-45 Score=402.08 Aligned_cols=226 Identities=14% Similarity=0.136 Sum_probs=180.4
Q ss_pred hhhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
.+.+++.++++.+++..+. ....|+|+||+|+|+++....+ |+||||+|++||++|||||||||||||+
T Consensus 1046 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V---L~~isl~I~~Ge~vaIVG~SGsGKSTL~ 1122 (1321)
T 4f4c_A 1046 FAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI---LKGLSFSVEPGQTLALVGPSGCGKSTVV 1122 (1321)
T ss_dssp HHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS---EEEEEEEECTTCEEEEECSTTSSTTSHH
T ss_pred HHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc---ccceeEEECCCCEEEEECCCCChHHHHH
Confidence 4456788888776654332 1225999999999975432224 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCccccccccc--CCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTI--PRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI 197 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~--~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~ 197 (346)
++|.|+|+ |++|+|++||.|+. .... -|+++++++|++..| ..++++||.++..
T Consensus 1123 ~lL~rl~~-----p~~G~I~iDG~di~------~i~~~~lR~~i~~V~Qdp~LF-----------~gTIreNI~~gld-- 1178 (1321)
T 4f4c_A 1123 ALLERFYD-----TLGGEIFIDGSEIK------TLNPEHTRSQIAIVSQEPTLF-----------DCSIAENIIYGLD-- 1178 (1321)
T ss_dssp HHHTTSSC-----CSSSEEEETTEETT------TBCHHHHHTTEEEECSSCCCC-----------SEEHHHHHSSSSC--
T ss_pred HHHhcCcc-----CCCCEEEECCEEhh------hCCHHHHHhheEEECCCCEee-----------CccHHHHHhccCC--
Confidence 99999999 99999999999997 2211 134455555555544 4456666665432
Q ss_pred cCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC
Q 019066 198 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR 268 (346)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld 268 (346)
+....++++.++++.+++++++..+|+||+|.|||+|. +||||||||++||||| |||||+||
T Consensus 1179 ---~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~------~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD 1249 (1321)
T 4f4c_A 1179 ---PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGT------QLSGGQKQRIAIARALVRNPKILLLDEATSALD 1249 (1321)
T ss_dssp ---TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC------SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTT
T ss_pred ---CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCc------ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCC
Confidence 11234577999999999999999999999999999964 9999999999999999 99999998
Q ss_pred C---------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 269 D---------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 269 ~---------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
. ++|+|+|||+ .....||||+| |++|+|+|.|+|+++++++
T Consensus 1250 ~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~V-ld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1250 TESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAV-VSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp SHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEE-ESSSSEEEEECHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEE-EECCEEEEECCHHHHHhCC
Confidence 4 8999999993 33345999965 9999999999999999874
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-44 Score=330.40 Aligned_cols=196 Identities=13% Similarity=0.184 Sum_probs=153.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 5 ~~~l~i~~l~~~y~~~~---v---l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK---A---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 73 (257)
T ss_dssp CEEEEEEEEEEEETTEE---E---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEeeeEEEECCEe---e---EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 45799999999997532 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhh-ccC-----------CChHHHHHHHHHHHHH
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELV-IRR-----------SDSSSLRNRMRCKAHK 215 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~-~~~-----------~~~~~~~~~~~~~l~~ 215 (346)
.. .....++.++|++|+...+..+ ++.+|+.++... ... ......++++.++++.
T Consensus 74 ~~---~~~~~~~~i~~v~q~~~l~~~~----------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 140 (257)
T 1g6h_A 74 KE---PAELYHYGIVRTFQTPQPLKEM----------TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140 (257)
T ss_dssp CC---HHHHHHHTEEECCCCCGGGGGS----------BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHH
T ss_pred CC---HHHHHhCCEEEEccCCccCCCC----------cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHH
Confidence 10 0011122455666654433222 555665554321 000 1234456788999999
Q ss_pred cCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------C
Q 019066 216 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------D 270 (346)
Q Consensus 216 ~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g 270 (346)
+++.+ ..++++.+||||||||++||||| ||||++||+ |
T Consensus 141 ~~l~~-----------------~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 203 (257)
T 1g6h_A 141 LKLSH-----------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKG 203 (257)
T ss_dssp TTCGG-----------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCch-----------------hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC
Confidence 99987 56889999999999999999999 999999984 8
Q ss_pred ceEEEEec--hhhhccccEEEEEecCCeEeecCCccc
Q 019066 271 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 271 ~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~ 305 (346)
+|||+||| +.+..+|||+++ |++|++++.|++++
T Consensus 204 ~tvi~vtHd~~~~~~~~d~v~~-l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 204 ITFLIIEHRLDIVLNYIDHLYV-MFNGQIIAEGRGEE 239 (257)
T ss_dssp CEEEEECSCCSTTGGGCSEEEE-EETTEEEEEEESHH
T ss_pred CEEEEEecCHHHHHHhCCEEEE-EECCEEEEEeCHHH
Confidence 99999999 578889999965 99999999998887
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-43 Score=321.33 Aligned_cols=203 Identities=17% Similarity=0.222 Sum_probs=163.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|++ + |+||||+|++ |+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~---~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~-- 64 (240)
T 2onk_A 1 MFLKVRAEKRLGN---F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITP-- 64 (240)
T ss_dssp CCEEEEEEEEETT---E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEeCC---E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCc--
Confidence 4899999999964 3 7789999999 9999999999999999999999999 999999999998751
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|+...+..+ ++.+|+.++.... .....++++.++++.+++.+
T Consensus 65 ----~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~--------- 118 (240)
T 2onk_A 65 ----LPPERRGIGFVPQDYALFPHL----------SVYRNIAYGLRNV---ERVERDRRVREMAEKLGIAH--------- 118 (240)
T ss_dssp ----SCTTTSCCBCCCSSCCCCTTS----------CHHHHHHTTCTTS---CHHHHHHHHHHHHHTTTCTT---------
T ss_pred ----CchhhCcEEEEcCCCccCCCC----------cHHHHHHHHHHHc---CCchHHHHHHHHHHHcCCHH---------
Confidence 111244677777776554433 4445554432211 11223577889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||+ |+|+|++|| +.+
T Consensus 119 --------~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~ 190 (240)
T 2onk_A 119 --------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA 190 (240)
T ss_dssp --------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 56889999999999999999999 999999984 789999999 567
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 324 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 324 (346)
..+||++++ |++|++++.|++++++..+ +.+++.++...+.
T Consensus 191 ~~~~d~i~~-l~~G~i~~~g~~~~~~~~~-~~~~~~~~~~~~~ 231 (240)
T 2onk_A 191 AMLADEVAV-MLNGRIVEKGKLKELFSAK-NGEVAEFLSARNL 231 (240)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSC-CSSHHHHGGGHHH
T ss_pred HHhCCEEEE-EECCEEEEECCHHHHHhCc-hHHHHHHhcCCcc
Confidence 889999964 9999999999999999888 7777766655443
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=331.84 Aligned_cols=195 Identities=13% Similarity=0.101 Sum_probs=155.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.|++.. + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 9 ~~~l~~~~l~~~~~~~~---v---L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA---L---INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNS 77 (266)
T ss_dssp CCEEEEEEEEEEETTEE---E---EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTT
T ss_pred cceEEEEeEEEEeCCee---E---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 45899999999997633 4 777999999999999999999999999999999999 999999999999862
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.... . .++.+++++|+...+..+ ++.+|+.++.... .....++++.++++.+++.+
T Consensus 78 ~~~~---~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~------- 133 (266)
T 4g1u_C 78 WQPK---A-LARTRAVMRQYSELAFPF----------SVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLA------- 133 (266)
T ss_dssp SCHH---H-HHHHEEEECSCCCCCSCC----------BHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCST-------
T ss_pred CCHH---H-HhheEEEEecCCccCCCC----------CHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChh-------
Confidence 1110 0 122356666665443222 4555555543321 12345678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------------CccccCCCC-----------------CceEEE
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD-----------------DKPVVV 275 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~-----------------g~tvii 275 (346)
..++++.+||||||||++||||| ||||++||+ ++|+|+
T Consensus 134 ----------~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~ 203 (266)
T 4g1u_C 134 ----------LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCC 203 (266)
T ss_dssp ----------TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEE
T ss_pred ----------HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 56889999999999999999997 999999984 579999
Q ss_pred Eec--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 276 VTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
||| +.+..+|||+++ |++|++++.|++++++.
T Consensus 204 vtHdl~~~~~~~d~v~v-l~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 204 VLHDLNLAALYADRIML-LAQGKLVACGTPEEVLN 237 (266)
T ss_dssp ECSCHHHHHHHCSEEEE-EETTEEEEEECHHHHCC
T ss_pred EEcCHHHHHHhCCEEEE-EECCEEEEEcCHHHHhC
Confidence 999 578889999965 99999999999998864
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=329.39 Aligned_cols=205 Identities=15% Similarity=0.137 Sum_probs=160.4
Q ss_pred cEEEeeeEEEeC-CCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~-~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
-|+++||+|+|+ ++.. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 7 ~~~~~~l~~~y~~~~~~--v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~~~ 76 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV--I---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLALA 76 (247)
T ss_dssp EEEEEEEEEESSTTSCE--E---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTS
T ss_pred ceeEEEEEEEeCCCCcc--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC
Confidence 489999999993 2333 4 777999999999999999999999999999999999 9999999999997511
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. ... .++.++|++|++..+ ..++.+|+.++.. .. .++++.++++.+++.+....+|+|
T Consensus 77 ~---~~~-~~~~i~~v~Q~~~l~-----------~~tv~enl~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~g 134 (247)
T 2ff7_A 77 D---PNW-LRRQVGVVLQDNVLL-----------NRSIIDNISLANP---GM----SVEKVIYAAKLAGAHDFISELREG 134 (247)
T ss_dssp C---HHH-HHHHEEEECSSCCCT-----------TSBHHHHHTTTCT---TC----CHHHHHHHHHHHTCHHHHHTSTTG
T ss_pred C---HHH-HHhcEEEEeCCCccc-----------cccHHHHHhccCC---CC----CHHHHHHHHHHhChHHHHHhCcch
Confidence 0 000 123456666655433 2355566655421 11 134577889999998888888888
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~ 282 (346)
+++.++++ +.+||||||||++||||| ||||++||. |+|+|+||| +.+.
T Consensus 135 l~~~~~~~------~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 135 YNTIVGEQ------GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp GGCBCSTT------TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred hhhhhhCC------CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 88877655 679999999999999999 999999984 899999999 4454
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSD 314 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~ 314 (346)
.||++++ |++|++++.|++++++..|...+
T Consensus 209 -~~d~v~~-l~~G~i~~~g~~~~l~~~~~~~~ 238 (247)
T 2ff7_A 209 -NADRIIV-MEKGKIVEQGKHKELLSEPESLY 238 (247)
T ss_dssp -TSSEEEE-EETTEEEEEECHHHHHTSTTCHH
T ss_pred -hCCEEEE-EECCEEEEECCHHHHHhCCchHH
Confidence 5999964 99999999999999987764333
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-43 Score=323.49 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=159.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++. . + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 13 ~~~l~i~~l~~~y~~~-~--v---l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~ 81 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKK-E--I---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVVE 81 (256)
T ss_dssp -CCEEEEEEEEEETTE-E--E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTT
T ss_pred CCeEEEEEEEEEECCE-E--E---EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCc
Confidence 5689999999999653 2 4 777999999999999999999999999999999999 999999999998752
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. . ...++.++|++|+...+..+ |.+|+.++... . .......++++.++++.++|.+
T Consensus 82 --~--~-~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~-----------~-~~~~~~~~~~~~~~l~~~gL~~------ 138 (256)
T 1vpl_A 82 --E--P-HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF-----------Y-ASSSSEIEEMVERATEIAGLGE------ 138 (256)
T ss_dssp --C--H-HHHHTTEEEECTTCCCCTTSBHHHHHHHHHHH-----------H-CCCHHHHHHHHHHHHHHHCCGG------
T ss_pred --c--H-HHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHH-----------c-CCChHHHHHHHHHHHHHCCCch------
Confidence 0 0 11134578888887666554 66666543211 1 1123344577889999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
.+++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 139 -----------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 139 -----------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207 (256)
T ss_dssp -----------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 56889999999999999999999 999999984 899999999 5
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+..+||++++ |++|++++.|++++++..
T Consensus 208 ~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 208 EVEFLCDRIAL-IHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHTTTCSEEEE-EETTEEEEEEEHHHHHHH
T ss_pred HHHHHCCEEEE-EECCEEEEecCHHHHHHh
Confidence 68889999964 999999999999888654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-43 Score=324.64 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=159.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+++|+++.. + |++|||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 1 ml~~~~l~~~y~~~~~--v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 70 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ--I---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNIS 70 (243)
T ss_dssp CEEEEEEEECSSSSSC--S---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTTS
T ss_pred CEEEEEEEEEeCCCCc--e---EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhCC
Confidence 4899999999943333 3 777999999999999999999999999999999999 99999999999975110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....++.++|++|++..+.. ++.+|+.++... . ..++++.++++.+++.+.+.++|+|+
T Consensus 71 ----~~~~~~~i~~v~q~~~l~~~-----------tv~enl~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~~gl 129 (243)
T 1mv5_A 71 ----LENWRSQIGFVSQDSAIMAG-----------TIRENLTYGLEG--D----YTDEDLWQVLDLAFARSFVENMPDQL 129 (243)
T ss_dssp ----CSCCTTTCCEECCSSCCCCE-----------EHHHHTTSCTTS--C----SCHHHHHHHHHHHTCTTTTTSSTTGG
T ss_pred ----HHHHHhhEEEEcCCCccccc-----------cHHHHHhhhccC--C----CCHHHHHHHHHHhChHHHHHhCccch
Confidence 11124456777777654432 455555554210 1 11345778899999999888889999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhhhc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDLLS 283 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~~~ 283 (346)
++.+++. +.+||||||||++||||| ||||++||+ |+|+|+||| +.+.
T Consensus 130 ~~~~~~~------~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~- 202 (243)
T 1mv5_A 130 NTEVGER------GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV- 202 (243)
T ss_dssp GCEESTT------SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-
T ss_pred hchhccC------cCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-
Confidence 8887765 679999999999999999 999999985 899999999 3454
Q ss_pred cccEEEEEecCCeEeecCCcccccc
Q 019066 284 LTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 284 ~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
.|||+++ |++|++++.|++++++.
T Consensus 203 ~~d~v~~-l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 203 DADKIYF-IEKGQITGSGKHNELVA 226 (243)
T ss_dssp HCSEEEE-EETTEECCCSCHHHHHH
T ss_pred hCCEEEE-EECCEEEEeCCHHHHHh
Confidence 5999964 99999999999888765
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=319.46 Aligned_cols=192 Identities=18% Similarity=0.110 Sum_probs=150.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 3 ~~l~~~~l~~~y~~~-~--~---l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 3 EILRAENIKKVIRGY-E--I---LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEEEETTE-E--E---EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCSS
T ss_pred cEEEEEeEEEEECCE-e--e---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 479999999999753 2 4 777999999999999999999999999999999999 9999999999987521
Q ss_pred ccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
...+...+.++.++|++|+...+..+ |.+|+.+. .... .......++++.++++.+++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~-----------~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 132 (224)
T 2pcj_A 72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVP-----------MLKM-GKPKKEAKERGEYLLSELGLGD------- 132 (224)
T ss_dssp CHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH-----------HHHT-TCCHHHHHHHHHHHHHHTTCTT-------
T ss_pred CHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhH-----------HHHc-CCCHHHHHHHHHHHHHHcCCch-------
Confidence 10000011123567788776555443 55555432 2111 1123445678899999999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. |+|+|+||| +.
T Consensus 133 ----------~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 133 ----------KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp ----------CTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ----------hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 46889999999999999999999 999999984 899999999 34
Q ss_pred hhccccEEEEEecCCeEeecCC
Q 019066 281 LLSLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~ 302 (346)
+ .+||++++ |++|++++.|+
T Consensus 203 ~-~~~d~v~~-l~~G~i~~~g~ 222 (224)
T 2pcj_A 203 A-ELTHRTLE-MKDGKVVGEIT 222 (224)
T ss_dssp H-TTSSEEEE-EETTEEEEEEE
T ss_pred H-HhCCEEEE-EECCEEEEEee
Confidence 5 78999964 99999999875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=364.46 Aligned_cols=224 Identities=12% Similarity=0.147 Sum_probs=175.0
Q ss_pred hhhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
...+|+.++++.+++..+. ...+|+++||+|+|+++ .. + |+|+||+|++||+++|+||||||||||+|
T Consensus 313 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~--~---l~~i~l~i~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 313 AACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKP--A---LSHVSFSIPQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCcc--c---cccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 3346677777765543211 13469999999999753 33 4 67799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ |++|+|.++|+++.... . ...|+.+++++|+ +.++..++.+|+.++..
T Consensus 388 ~l~g~~~-----p~~G~i~~~g~~~~~~~---~-~~~~~~i~~v~Q~-----------~~l~~~tv~eni~~~~~----- 442 (582)
T 3b5x_A 388 LFTRFYD-----VDSGSICLDGHDVRDYK---L-TNLRRHFALVSQN-----------VHLFNDTIANNIAYAAE----- 442 (582)
T ss_pred HHhcCCC-----CCCCEEEECCEEhhhCC---H-HHHhcCeEEEcCC-----------CccccccHHHHHhccCC-----
Confidence 9999999 99999999999985100 0 0113344555554 44445567777776531
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
....++++.++++.+++.+.+.++|+||+|.++++ +.+||||||||++||||| ||||++||+
T Consensus 443 -~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~------~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 443 -GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN------GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515 (582)
T ss_pred -CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCC------CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 01124668899999999999999999999999988 559999999999999999 999999984
Q ss_pred -------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+|||+ .....||+|+ +|++|++++.|++++++..
T Consensus 516 ~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~-~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b5x_A 516 ERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL-VVDEGEIIERGRHADLLAQ 568 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE-EEECCEEEEECCHHHHHhC
Confidence 8999999993 3334699996 4999999999999999865
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=398.22 Aligned_cols=226 Identities=12% Similarity=0.135 Sum_probs=180.8
Q ss_pred hhhHHHHHHhhhhhhhhccC---------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTRI---------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 118 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTL 118 (346)
.+..|+.++++.+++..+.. ...|+++||+|+|++.....+ |+||||+|++|+++|||||||||||||
T Consensus 384 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v---L~~isl~i~~G~~vaivG~sGsGKSTl 460 (1321)
T 4f4c_A 384 GAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI---LRGMNLRVNAGQTVALVGSSGCGKSTI 460 (1321)
T ss_dssp HHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS---EEEEEEEECTTCEEEEEECSSSCHHHH
T ss_pred HHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce---eeceEEeecCCcEEEEEecCCCcHHHH
Confidence 34567899998776543321 225999999999975432224 777999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc
Q 019066 119 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 198 (346)
Q Consensus 119 l~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~ 198 (346)
+++|.|+|+ |++|+|.+||.+++ . +.....|..+++|+|++.++..++++||.++..
T Consensus 461 l~ll~~~~~-----~~~G~I~idG~~i~------~---------~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~--- 517 (1321)
T 4f4c_A 461 ISLLLRYYD-----VLKGKITIDGVDVR------D---------INLEFLRKNVAVVSQEPALFNCTIEENISLGKE--- 517 (1321)
T ss_dssp HHHHTTSSC-----CSEEEEEETTEETT------T---------SCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT---
T ss_pred HHHhccccc-----cccCcccCCCccch------h---------ccHHHHhhcccccCCcceeeCCchhHHHhhhcc---
Confidence 999999999 99999999999987 1 222233333444444444445556666665532
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC
Q 019066 199 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 269 (346)
...++++.++++.+++++++..+|+||+|+|||+|. +||||||||++||||+ |||||+||.
T Consensus 518 ----~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~------~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 518 ----GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGT------QLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp ----TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSC------CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred ----cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCC------CCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Confidence 223577999999999999999999999999999965 9999999999999999 999999995
Q ss_pred ---------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 ---------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 ---------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
|+|+|+||| -...+.||+|+ +|++|+|++.|+|++++...
T Consensus 588 ~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Ii-vl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 588 ESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLII-SCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEE-EEETTEEEEEECHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEE-EeeCCeeeccCCHHHHHHhh
Confidence 899999999 34556799996 59999999999999998763
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=323.58 Aligned_cols=197 Identities=15% Similarity=0.223 Sum_probs=154.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 4 ~~~l~~~~l~~~y~~~-~--v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAI-H--A---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETTE-E--E---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CceEEEEeEEEEECCe-e--E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 4579999999999753 2 4 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcC-CCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~ 226 (346)
.. .....++.++|++|+...+..+ ++.+|+.++... .......++++.++++.++ +.+
T Consensus 73 ~~---~~~~~~~~i~~v~q~~~l~~~l----------tv~enl~~~~~~--~~~~~~~~~~~~~~l~~~~~l~~------ 131 (240)
T 1ji0_A 73 KP---AHVINRMGIALVPEGRRIFPEL----------TVYENLMMGAYN--RKDKEGIKRDLEWIFSLFPRLKE------ 131 (240)
T ss_dssp CC---HHHHHHTTEEEECSSCCCCTTS----------BHHHHHHGGGTT--CCCSSHHHHHHHHHHHHCHHHHT------
T ss_pred CC---HHHHHhCCEEEEecCCccCCCC----------cHHHHHHHhhhc--CCCHHHHHHHHHHHHHHcccHhh------
Confidence 10 1111123467777776555443 344444443211 1112345567888899994 876
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
..++++.+||||||||++||||| ||||++||+ |+|+|+||| +
T Consensus 132 -----------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 132 -----------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp -----------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 46889999999999999999999 999999984 899999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCcccccc
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
.+.++|||+++ |++|++++.|++++++.
T Consensus 201 ~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 201 GALKVAHYGYV-LETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHCSEEEE-EETTEEEEEEEHHHHHT
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHhc
Confidence 68889999964 99999999999888764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-44 Score=365.70 Aligned_cols=224 Identities=12% Similarity=0.122 Sum_probs=176.0
Q ss_pred hhhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
.+.+|+.++++.+++..+. ....|+++||+|+|+++.. .+ |+|+||+|++||++||+||||||||||+
T Consensus 309 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~-~~---l~~isl~i~~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 309 ASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEA-PI---LKDINLSIEKGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp HHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSC-CS---EEEEEEEECTTCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCC-cc---eeeeEEEECCCCEEEEECCCCChHHHHH
Confidence 3456788888776553221 1235999999999975432 14 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
++|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+. .++.+|+.++..
T Consensus 385 ~~l~g~~~-----p~~G~i~~~g~~~~~~~---~-~~~r~~i~~v~Q~~~l~~-----------~tv~eni~~~~~---- 440 (578)
T 4a82_A 385 NLIPRFYD-----VTSGQILIDGHNIKDFL---T-GSLRNQIGLVQQDNILFS-----------DTVKENILLGRP---- 440 (578)
T ss_dssp TTTTTSSC-----CSEEEEEETTEEGGGSC---H-HHHHHTEEEECSSCCCCS-----------SBHHHHHGGGCS----
T ss_pred HHHhcCCC-----CCCcEEEECCEEhhhCC---H-HHHhhheEEEeCCCccCc-----------ccHHHHHhcCCC----
Confidence 99999999 99999999999986110 0 011334566666655444 355556555421
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
...++++.++++.+++.+.+..+|+|++|.+|+++ .+||||||||++||||| |||||+||+
T Consensus 441 ---~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g------~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~ 511 (578)
T 4a82_A 441 ---TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG------VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511 (578)
T ss_dssp ---SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGG------TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHH
T ss_pred ---CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCC------CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 11235678889999999999999999999999995 49999999999999999 999999984
Q ss_pred --------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 --------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 --------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
++|+|+||| +.+ ..||||++ |++|++++.|++++++..+
T Consensus 512 ~~~~i~~~l~~~~~~~t~i~itH~l~~~-~~~d~i~~-l~~G~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 512 SESIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVV-IENGHIVETGTHRELIAKQ 566 (578)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECSSGGGT-TTCSEEEE-EETTEEEEEECHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCHHHH-HcCCEEEE-EECCEEEEECCHHHHHhCC
Confidence 899999999 345 45999964 9999999999999998763
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=369.01 Aligned_cols=222 Identities=15% Similarity=0.180 Sum_probs=174.5
Q ss_pred hhhHHHHHHhhhhhhhhcc-------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
.+.+|+.++++.+++.... ....|+++||+|+|+++.. + |+|+||+|++||++||+||||||||||++
T Consensus 325 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~--~---l~~isl~i~~G~~~~ivG~sGsGKSTll~ 399 (598)
T 3qf4_B 325 ASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKP--V---LKDITFHIKPGQKVALVGPTGSGKTTIVN 399 (598)
T ss_dssp HHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSSC--S---CCSEEEECCTTCEEEEECCTTSSTTHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCc--c---ccceEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 3456788888766553221 1235999999999976443 4 67799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+. .++.+|+.++..
T Consensus 400 ~l~g~~~-----p~~G~i~~~g~~i~~~~---~-~~~r~~i~~v~Q~~~lf~-----------~tv~eni~~~~~----- 454 (598)
T 3qf4_B 400 LLMRFYD-----VDRGQILVDGIDIRKIK---R-SSLRSSIGIVLQDTILFS-----------TTVKENLKYGNP----- 454 (598)
T ss_dssp HHTTSSC-----CSEEEEEETTEEGGGSC---H-HHHHHHEEEECTTCCCCS-----------SBHHHHHHSSST-----
T ss_pred HHhcCcC-----CCCeEEEECCEEhhhCC---H-HHHHhceEEEeCCCcccc-----------ccHHHHHhcCCC-----
Confidence 9999999 99999999999986110 0 011334556666654443 355566655421
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
...++++.++++.+++.+.+..+|+|++|.+|+++. +||||||||++||||| |||||+||.
T Consensus 455 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~------~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 455 --GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGE------DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKT 526 (598)
T ss_dssp --TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHT------TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHH
T ss_pred --CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCC------CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 111245678899999999999999999999999954 9999999999999999 999999984
Q ss_pred -------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+||| +.+. .||+|++ |++|++++.|++++++..
T Consensus 527 ~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~-l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 527 EKSIQAAMWKLMEGKTSIIIAHRLNTIK-NADLIIV-LRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHHHHHHHHHHTTSEEEEESCCTTHHH-HCSEEEE-ECSSSEEECSCHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEE-EECCEEEEECCHHHHHhC
Confidence 899999999 4554 4999964 999999999999999875
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=364.14 Aligned_cols=224 Identities=10% Similarity=0.110 Sum_probs=175.0
Q ss_pred hhhHHHHHHhhhhhhhhcc------CCCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVN 120 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~ 120 (346)
...+|+.++++.+++..+. ...+|+++||+|+|+++ .. + |+|+||+|++||++||+||||||||||++
T Consensus 313 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~--~---l~~v~~~i~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 313 AACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVP--A---LRNINLKIPAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp HHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCC--S---EEEEEEEECTTCEEEEEECTTSSHHHHHH
T ss_pred HHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCc--c---ccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 3456778888766543221 13469999999999743 33 3 77799999999999999999999999999
Q ss_pred HHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCC
Q 019066 121 RISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRS 200 (346)
Q Consensus 121 ~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~ 200 (346)
+|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+.+ ++.+|+.++.. .
T Consensus 388 ~l~g~~~-----p~~G~i~~~g~~~~~~~---~-~~~~~~i~~v~Q~~~l~~~-----------tv~eni~~~~~--~-- 443 (582)
T 3b60_A 388 LITRFYD-----IDEGHILMDGHDLREYT---L-ASLRNQVALVSQNVHLFND-----------TVANNIAYART--E-- 443 (582)
T ss_dssp HHTTTTC-----CSEEEEEETTEETTTBC---H-HHHHHTEEEECSSCCCCSS-----------BHHHHHHTTTT--S--
T ss_pred HHhhccC-----CCCCeEEECCEEccccC---H-HHHHhhCeEEccCCcCCCC-----------CHHHHHhccCC--C--
Confidence 9999999 99999999999986110 0 0113345666666655443 45555554321 0
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--
Q 019066 201 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-- 269 (346)
Q Consensus 201 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-- 269 (346)
...++++.++++.+++.+.+.++|+|++|.++++ +.+||||||||++||||| |||||+||+
T Consensus 444 --~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~------~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 444 --EYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN------GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp --CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT------SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred --CCCHHHHHHHHHHcCCHHHHHhccccccccccCC------CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 1124668889999999999999999999999988 559999999999999999 999999984
Q ss_pred -------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 -------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 -------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+|||+ ...+.||||++ |++|++++.|++++++..
T Consensus 516 ~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~-l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 516 ERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVV-VEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE-EECCEEEEecCHHHHHHc
Confidence 8999999992 33356999964 999999999999998764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=343.48 Aligned_cols=213 Identities=12% Similarity=0.092 Sum_probs=168.7
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
...|+++||+|+|+++.. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++..
T Consensus 17 ~~~i~~~~l~~~y~~~~~-~~---L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGN-AI---LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWDS 86 (390)
T ss_dssp SCCEEEEEEEEESSSSSC-CS---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTTS
T ss_pred CCeEEEEEEEEEecCCCe-EE---eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECCc
Confidence 356999999999953221 24 777999999999999999999999999999999985 57999999999862
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. . ...++.++|++|++..|. .++.+|+.+.. ...++++.++++.++|.+...++|+
T Consensus 87 ~~---~-~~~rr~ig~v~Q~~~lf~-----------~tv~enl~~~~--------~~~~~~v~~~l~~~~L~~~~~~~p~ 143 (390)
T 3gd7_A 87 IT---L-EQWRKAFGVIPQKVFIFS-----------GTFRKNLDPNA--------AHSDQEIWKVADEVGLRSVIEQFPG 143 (390)
T ss_dssp SC---H-HHHHHTEEEESCCCCCCS-----------EEHHHHHCTTC--------CSCHHHHHHHHHHTTCHHHHTTSTT
T ss_pred CC---h-HHHhCCEEEEcCCcccCc-----------cCHHHHhhhcc--------ccCHHHHHHHHHHhCCHHHHhhccc
Confidence 10 0 001234566766665543 34555554211 1123567889999999998888888
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLL 282 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~ 282 (346)
++++.+++.+ .+|||||||||+||||| ||||++||. ++|+|+||| ..+.
T Consensus 144 ~l~~~i~~~g------~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~ 217 (390)
T 3gd7_A 144 KLDFVLVDGG------CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM 217 (390)
T ss_dssp GGGCEECTTT------TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG
T ss_pred cccccccccc------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH
Confidence 8999888874 48999999999999999 999999983 889999999 3455
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
..||||++ |++|+|++.|++++++.+|.+.++..++.
T Consensus 218 ~~aDri~v-l~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 218 LECDQFLV-IEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp TTCSEEEE-EETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred HhCCEEEE-EECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 67999975 99999999999999999998887777664
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=322.89 Aligned_cols=198 Identities=13% Similarity=0.164 Sum_probs=155.2
Q ss_pred cEEEeeeEEEeC-CCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYT-PGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~-~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+|+++||+++|+ ++. ...+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v---l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA---LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecCCCccccce---eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEECch
Confidence 589999999997 221 0124 777999999999999999999999999999999999 999999999998751
Q ss_pred cccccccccCCCCccceeecc-cccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC--ccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE--PSVIR 224 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~-~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~ 224 (346)
.. .++.++|++|++ ..+.. .++.+|+.++.... ......++++.++++.+++. +
T Consensus 74 ------~~-~~~~i~~v~q~~~~~~~~----------~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~---- 130 (266)
T 2yz2_A 74 ------YE-IRRNIGIAFQYPEDQFFA----------ERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDS---- 130 (266)
T ss_dssp ------HH-HGGGEEEECSSGGGGCCC----------SSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHH----
T ss_pred ------HH-hhhhEEEEeccchhhcCC----------CcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcc----
Confidence 11 133567777764 22222 24455555432211 11223346788999999998 7
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
..++++.+||||||||++||||| ||||++||. |+|||+|||
T Consensus 131 -------------~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 131 -------------FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp -------------HTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred -------------cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56889999999999999999999 999999984 899999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCccccccCCCC
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 312 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~ 312 (346)
+.+..+||++++ |++|++++.|++++++..+.+
T Consensus 198 ~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~~~~~ 231 (266)
T 2yz2_A 198 IETVINHVDRVVV-LEKGKKVFDGTRMEFLEKYDP 231 (266)
T ss_dssp CTTTGGGCSEEEE-EETTEEEEEEEHHHHHHHSCC
T ss_pred HHHHHHhCCEEEE-EECCEEEEeCCHHHHhcCccc
Confidence 567889999964 999999999999998876554
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=359.22 Aligned_cols=224 Identities=17% Similarity=0.127 Sum_probs=174.3
Q ss_pred hhhHHHHHHhhhhhhhhcc--------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl 119 (346)
.+.+|+.++++.+++..+. ....|+++||+|+|+++.. .+ |+|+||+|++||+++|+||||||||||+
T Consensus 311 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~-~~---l~~isl~i~~Ge~~~ivG~sGsGKSTll 386 (587)
T 3qf4_A 311 ASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTD-PV---LSGVNFSVKPGSLVAVLGETGSGKSTLM 386 (587)
T ss_dssp HHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSC-CS---EEEEEEEECTTCEEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCC-cc---eeceEEEEcCCCEEEEECCCCCCHHHHH
Confidence 3456778888766543221 1235999999999965332 14 7779999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccC
Q 019066 120 NRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRR 199 (346)
Q Consensus 120 ~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~ 199 (346)
++|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+. .++++|+.++..
T Consensus 387 ~~l~g~~~-----~~~G~i~i~g~~i~~~~---~-~~~r~~i~~v~Q~~~lf~-----------~tv~eni~~~~~---- 442 (587)
T 3qf4_A 387 NLIPRLID-----PERGRVEVDELDVRTVK---L-KDLRGHISAVPQETVLFS-----------GTIKENLKWGRE---- 442 (587)
T ss_dssp HTTTTSSC-----CSEEEEEESSSBGGGBC---H-HHHHHHEEEECSSCCCCS-----------EEHHHHHTTTCS----
T ss_pred HHHhCCcc-----CCCcEEEECCEEcccCC---H-HHHHhheEEECCCCcCcC-----------ccHHHHHhccCC----
Confidence 99999999 99999999999986110 0 011334566666655443 355556554422
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-
Q 019066 200 SDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD- 269 (346)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~- 269 (346)
...++++.++++.+++.+.+..+|+|++|.++++ +.+||||||||++||||| |||||+||.
T Consensus 443 ---~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~------~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~ 513 (587)
T 3qf4_A 443 ---DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERG------GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI 513 (587)
T ss_dssp ---SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSS------SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHH
T ss_pred ---CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCC------CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 1123567778999999999999999999999988 569999999999999999 999999984
Q ss_pred --------------CceEEEEech-hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 --------------DKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 --------------g~tviiiTH~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
|+|+|+|||+ .....||||++ |++|+|++.|+++++++.
T Consensus 514 ~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~v-l~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 514 TEKRILDGLKRYTKGCTTFIITQKIPTALLADKILV-LHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 8999999993 33457999964 999999999999998764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=323.90 Aligned_cols=202 Identities=13% Similarity=0.111 Sum_probs=152.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++..
T Consensus 19 ~~~l~~~~l~~~y~~~-~--v---L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~ 87 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQGK-T--I---LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPGK 87 (279)
T ss_dssp CEEEEEEEEEEEETTE-E--E---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBCCC-
T ss_pred CceEEEEeEEEEECCE-E--E---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 4579999999999753 2 4 777999999999999999999999999999999999 999999999988630
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc---cCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI---RRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
... .... .++.++|++|+...+.. ...++.+|+.++.... ........++++.++++.+++.+
T Consensus 88 ~~~-~~~~-~~~~i~~v~Q~~~~~~~--------~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~---- 153 (279)
T 2ihy_A 88 VGY-SAET-VRQHIGFVSHSLLEKFQ--------EGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA---- 153 (279)
T ss_dssp --C-CHHH-HHTTEEEECHHHHTTSC--------TTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG----
T ss_pred ccC-CHHH-HcCcEEEEEcCcccccC--------CCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh----
Confidence 000 0001 12345666665432110 0014555655542110 01112344677899999999987
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceE--EEEe
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPV--VVVT 277 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tv--iiiT 277 (346)
.+++++.+||||||||++||||| ||||++||. |+|| |+||
T Consensus 154 -------------~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivt 220 (279)
T 2ihy_A 154 -------------KAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVT 220 (279)
T ss_dssp -------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEe
Confidence 56889999999999999999999 999999984 7899 9999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
| +.+..+||++++ |++|++++.|++++++.
T Consensus 221 Hd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 221 HFIEEITANFSKILL-LKDGQSIQQGAVEDILT 252 (279)
T ss_dssp SCGGGCCTTCCEEEE-EETTEEEEEEEHHHHCS
T ss_pred cCHHHHHHhCCEEEE-EECCEEEEECCHHHHhc
Confidence 9 567789999965 99999999999888764
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-42 Score=318.75 Aligned_cols=203 Identities=12% Similarity=0.159 Sum_probs=156.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+++|++.....+ |++|||+|++||+++|+||||||||||+|+|+|+++ | +|+|.++|+++..
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~~ 85 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHRT---LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVNK 85 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGGG
T ss_pred CCeEEEEEEEEEeCCCCcCce---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhhh
Confidence 357999999999975321114 777999999999999999999999999999999998 7 7999999998751
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
. .... .++.++|++|++..+.. ++.+|+.++.. .. .++++.++++.+++.+.+..+|+
T Consensus 86 ~---~~~~-~~~~i~~v~Q~~~l~~~-----------tv~enl~~~~~---~~----~~~~~~~~l~~~~l~~~~~~l~~ 143 (260)
T 2ghi_A 86 Y---NRNS-IRSIIGIVPQDTILFNE-----------TIKYNILYGKL---DA----TDEEVIKATKSAQLYDFIEALPK 143 (260)
T ss_dssp B---CHHH-HHTTEEEECSSCCCCSE-----------EHHHHHHTTCT---TC----CHHHHHHHHHHTTCHHHHHTSTT
T ss_pred c---CHHH-HhccEEEEcCCCccccc-----------CHHHHHhccCC---CC----CHHHHHHHHHHhCCHHHHHhccc
Confidence 1 0001 13456777776654432 44555544321 01 13456778889999877767788
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec--hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH--GDL 281 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH--~~~ 281 (346)
++++.+++. +.+||||||||++||||| ||||++||. ++|+|+||| +.+
T Consensus 144 ~~~~~~~~~------~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~ 217 (260)
T 2ghi_A 144 KWDTIVGNK------GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTI 217 (260)
T ss_dssp GGGCEESSS------SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGS
T ss_pred cccccccCC------cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 888877655 679999999999999999 999999984 789999999 344
Q ss_pred hccccEEEEEecCCeEeecCCccccccC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
..||++++ |++|++++.|++++++..
T Consensus 218 -~~~d~i~~-l~~G~i~~~g~~~~l~~~ 243 (260)
T 2ghi_A 218 -SSAESIIL-LNKGKIVEKGTHKDLLKL 243 (260)
T ss_dssp -TTCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred -HhCCEEEE-EECCEEEEECCHHHHHhc
Confidence 45999964 999999999999988754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=308.39 Aligned_cols=194 Identities=12% Similarity=0.118 Sum_probs=146.8
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh--ccCCCCCCCCceEEECceeCCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl--~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~~~-~--v---l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~~~~ 71 (250)
T 2d2e_A 3 QLEIRDLWASIDGE-T--I---LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGENILE 71 (250)
T ss_dssp EEEEEEEEEEETTE-E--E---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEECTT
T ss_pred eEEEEeEEEEECCE-E--E---EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEECCC
Confidence 69999999999753 2 4 7779999999999999999999999999999998 78 999999999999752
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC-cccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 225 (346)
.. .....+..++|++|++..+.++ +.+|+.+...... + .........+++.++++.+++. +
T Consensus 72 ~~---~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~--------~~~~~~~~~~~~~~~l~~~gl~~~----- 134 (250)
T 2d2e_A 72 LS---PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL-G--------REVGVAEFWTKVKKALELLDWDES----- 134 (250)
T ss_dssp SC---HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH-T--------SCCCHHHHHHHHHHHHHHHTCCGG-----
T ss_pred CC---HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc-c--------ccCCHHHHHHHHHHHHHHcCCChh-----
Confidence 11 1111123467888887766655 6666654321100 0 0011234456788999999995 5
Q ss_pred cceeeeeechhhhcccCCCC-CCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGD-SDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~-LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH- 278 (346)
..++++.+ ||||||||++||||| ||||++||. |+|||+|||
T Consensus 135 ------------~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 202 (250)
T 2d2e_A 135 ------------YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202 (250)
T ss_dssp ------------GGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred ------------HhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 46888999 999999999999999 999999984 789999999
Q ss_pred -hhhhcc-ccEEEEEecCCeEeecCCcc
Q 019066 279 -GDLLSL-TDRARIRTYLGELLGIPPAK 304 (346)
Q Consensus 279 -~~~~~~-aDri~v~l~~G~iv~~g~~~ 304 (346)
+.+..+ ||++++ |++|++++.|+++
T Consensus 203 ~~~~~~~~~d~v~~-l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 203 QRILNYIQPDKVHV-MMDGRVVATGGPE 229 (250)
T ss_dssp SGGGGTSCCSEEEE-EETTEEEEEESHH
T ss_pred HHHHHHhcCCEEEE-EECCEEEEEeCHH
Confidence 567777 599964 9999999998875
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-42 Score=319.80 Aligned_cols=196 Identities=10% Similarity=0.085 Sum_probs=144.0
Q ss_pred CCcEEEeeeEEEeCCC--CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 68 GSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~--~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
..+|+++||+++|+++ .. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~--v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i 83 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQ--V---LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPL 83 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSC--C---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEG
T ss_pred CceEEEEEEEEEeCCCCCce--e---eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEc
Confidence 3579999999999752 22 3 777999999999999999999999999999999999 9999999999987
Q ss_pred CCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHH-----HHHHHHHHHHHc--CC
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS-----LRNRMRCKAHKI--GC 218 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l 218 (346)
... .. ...++.++|++|++..+.. ++.+|+.++.... ..... ....+.++++.+ ++
T Consensus 84 ~~~---~~-~~~~~~i~~v~Q~~~l~~~-----------tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl 146 (271)
T 2ixe_A 84 VQY---DH-HYLHTQVAAVGQEPLLFGR-----------SFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGY 146 (271)
T ss_dssp GGB---CH-HHHHHHEEEECSSCCCCSS-----------BHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGG
T ss_pred ccC---CH-HHHhccEEEEecCCccccc-----------cHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcch
Confidence 510 00 0112345677776554432 4455555432110 01011 111233445555 44
Q ss_pred CcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------Cce
Q 019066 219 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKP 272 (346)
Q Consensus 219 ~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~t 272 (346)
.. ..++++.+||||||||++||||| ||||++||. |+|
T Consensus 147 ~~-----------------~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~t 209 (271)
T 2ixe_A 147 DT-----------------EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT 209 (271)
T ss_dssp GS-----------------BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSE
T ss_pred hh-----------------hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCE
Confidence 43 34667889999999999999999 999999873 789
Q ss_pred EEEEec--hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 273 VVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 273 viiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+|+||| +.+. .||++++ |++|++++.|++++++..
T Consensus 210 viivtHd~~~~~-~~d~v~~-l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 210 VLLITQQLSLAE-RAHHILF-LKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp EEEECSCHHHHT-TCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred EEEEeCCHHHHH-hCCEEEE-EECCEEEEECCHHHHHhC
Confidence 999999 4455 5999964 999999999999988754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=311.03 Aligned_cols=204 Identities=13% Similarity=0.081 Sum_probs=153.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh--ccCCCCCCCCceEEECceeC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl--~~~~~~~p~~G~I~~~g~~i 145 (346)
.++|+++||+++|++. . + |+||||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|+++
T Consensus 18 ~~~l~~~~l~~~y~~~-~--v---l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~i 86 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDK-A--I---LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDL 86 (267)
T ss_dssp --CEEEEEEEEEETTE-E--E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEEG
T ss_pred CceEEEEeEEEEECCE-E--E---EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEEC
Confidence 4579999999999652 2 4 7779999999999999999999999999999999 57 8999999999987
Q ss_pred CCcccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 224 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 224 (346)
.... .....++.++|++|++..+..+ +.+++.+....... ..+. ......+.++++.++++.+++...
T Consensus 87 ~~~~---~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~l~~~gl~~~--- 155 (267)
T 2zu0_C 87 LALS---PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS--YRGQ---ETLDRFDFQDLMEEKIALLKMPED--- 155 (267)
T ss_dssp GGSC---HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHH--GGGC---CCCCHHHHHHHHHHHHHHTTCCTT---
T ss_pred CcCC---HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhh--hhcc---ccCCHHHHHHHHHHHHHHcCCChh---
Confidence 5111 1111123467888887776665 66666542211100 0010 011233446788999999999642
Q ss_pred ccceeeeeechhhhcccCCC-CCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec
Q 019066 225 KVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~-~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH 278 (346)
..++++. +||||||||++||||| ||||++||. |+|||+|||
T Consensus 156 -------------~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH 222 (267)
T 2zu0_C 156 -------------LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222 (267)
T ss_dssp -------------TTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECS
T ss_pred -------------HhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 3577887 5999999999999999 999999984 789999999
Q ss_pred --hhhhcc-ccEEEEEecCCeEeecCCccccc
Q 019066 279 --GDLLSL-TDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 279 --~~~~~~-aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
+.+..+ |||+++ |++|++++.|+++++.
T Consensus 223 d~~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 223 YQRILDYIKPDYVHV-LYQGRIVKSGDFTLVK 253 (267)
T ss_dssp SGGGGGTSCCSEEEE-EETTEEEEEECTTHHH
T ss_pred CHHHHHhhcCCEEEE-EECCEEEEEcCHHHHh
Confidence 456665 899964 9999999999887664
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=300.58 Aligned_cols=182 Identities=14% Similarity=0.134 Sum_probs=146.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++|+++.. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+
T Consensus 4 ~l~i~~l~~~y~~~~~--v---l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~--------- 64 (253)
T 2nq2_C 4 ALSVENLGFYYQAENF--L---FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEV--------- 64 (253)
T ss_dssp EEEEEEEEEEETTTTE--E---EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEE---------
T ss_pred eEEEeeEEEEeCCCCe--E---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEE---------
Confidence 6999999999972233 3 777999999999999999999999999999999999 99999982
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhc-cC--CChHHHHHHHHHHHHHcCCCcccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVI-RR--SDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~-~~--~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
++.++|++|+...+..+ |.+|+. ++.... .. ......++++.++++.+++.+
T Consensus 65 --------~~~i~~v~q~~~~~~~~tv~enl~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 120 (253)
T 2nq2_C 65 --------YQSIGFVPQFFSSPFAYSVLDIVL-----------MGRSTHINTFAKPKSHDYQVAMQALDYLNLTH----- 120 (253)
T ss_dssp --------CSCEEEECSCCCCSSCCBHHHHHH-----------GGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-----
T ss_pred --------eccEEEEcCCCccCCCCCHHHHHH-----------HhhhhhcccccCCCHHHHHHHHHHHHHcCChH-----
Confidence 12457888877655333 555544 332111 00 112344677899999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec-
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH- 278 (346)
.+++++.+||||||||++||||| ||||++||. |+|+|++||
T Consensus 121 ------------~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 121 ------------LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp ------------GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred ------------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 56889999999999999999999 999999983 789999999
Q ss_pred -hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 279 -GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 279 -~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+.+.++||++++ |++|+ ++.|++++++.
T Consensus 189 ~~~~~~~~d~v~~-l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 189 PNQVVAIANKTLL-LNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHHCSEEEE-EETTE-EEEEEHHHHCC
T ss_pred HHHHHHhCCEEEE-EeCCe-EecCCHHHHhC
Confidence 567789999964 99999 99998888753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=367.21 Aligned_cols=225 Identities=11% Similarity=0.102 Sum_probs=175.4
Q ss_pred hhhHHHHHHhhhhhhhhcc---------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 118 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTL 118 (346)
.+..++.++++.+++..+. ....|+++||+|+|++.....+ |+||||+|++||++|||||||||||||
T Consensus 356 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~ivG~sGsGKSTl 432 (1284)
T 3g5u_A 356 GAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVALVGNSGCGKSTT 432 (1284)
T ss_dssp HHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc---eecceEEEcCCCEEEEECCCCCCHHHH
Confidence 3456788888776553221 1235999999999975422224 777999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc
Q 019066 119 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 198 (346)
Q Consensus 119 l~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~ 198 (346)
+++|+|+++ |++|+|.++|+++.... . ...|+.+++++|++..+.+ ++.+|+.++..
T Consensus 433 ~~ll~g~~~-----~~~G~i~i~g~~i~~~~---~-~~~r~~i~~v~Q~~~l~~~-----------ti~eNi~~g~~--- 489 (1284)
T 3g5u_A 433 VQLMQRLYD-----PLDGMVSIDGQDIRTIN---V-RYLREIIGVVSQEPVLFAT-----------TIAENIRYGRE--- 489 (1284)
T ss_dssp HHHTTTSSC-----CSEEEEEETTEEGGGSC---H-HHHHHHEEEECSSCCCCSS-----------CHHHHHHHHCS---
T ss_pred HHHHhCCCC-----CCCeEEEECCEEHHhCC---H-HHHHhheEEEcCCCccCCc-----------cHHHHHhcCCC---
Confidence 999999999 99999999999986110 0 0113345566666555444 45555554432
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC
Q 019066 199 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 269 (346)
...++++.++++.+++.+++..+|+|++|.|||+ +.+||||||||++||||| |||||+||.
T Consensus 490 ----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~------g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~ 559 (1284)
T 3g5u_A 490 ----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGER------GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559 (1284)
T ss_dssp ----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSS------SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCH
T ss_pred ----CCCHHHHHHHHHHhCcHHHHHhccccccccccCC------CCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 1123567888999999999999999999999998 459999999999999999 999999984
Q ss_pred ---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 ---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 ---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
|+|+|+||| ..+.. ||+|++ |++|+|++.|++++++...
T Consensus 560 ~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~v-l~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 560 ESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAG-FDGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEE-CSSSCCCCEECHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEE-EECCEEEEECCHHHHHhCC
Confidence 899999999 45554 999965 9999999999999988653
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-40 Score=303.00 Aligned_cols=185 Identities=13% Similarity=0.130 Sum_probs=146.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++ . + |+|+||+|++||+++|+||||||||||+|+|+|+++ |+ |+|.++|+++....
T Consensus 4 ~l~~~~l~~~----~---v---l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~~~~ 67 (249)
T 2qi9_C 4 VMQLQDVAES----T---R---LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLEAWS 67 (249)
T ss_dssp EEEEEEEEET----T---T---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGGGSC
T ss_pred EEEEEceEEE----E---E---EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECCcCC
Confidence 6999999986 2 3 788999999999999999999999999999999999 99 99999999874100
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
... .++.++|++|+...+..+ ++.+|+.++... .. . ++++.++++.+++.+
T Consensus 68 ---~~~-~~~~i~~v~q~~~~~~~~----------tv~e~l~~~~~~--~~--~--~~~~~~~l~~~~l~~--------- 118 (249)
T 2qi9_C 68 ---ATK-LALHRAYLSQQQTPPFAT----------PVWHYLTLHQHD--KT--R--TELLNDVAGALALDD--------- 118 (249)
T ss_dssp ---HHH-HHHHEEEECSCCCCCTTC----------BHHHHHHTTCSS--TT--C--HHHHHHHHHHTTCGG---------
T ss_pred ---HHH-HhceEEEECCCCccCCCC----------cHHHHHHHhhcc--CC--c--HHHHHHHHHHcCChh---------
Confidence 000 122456666665443322 455555543211 01 1 567889999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc----------------CccccCCCC----------------CceEEEEe
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tviiiT 277 (346)
.+++++.+||||||||++||||| ||||++||. |+|+|++|
T Consensus 119 --------~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 190 (249)
T 2qi9_C 119 --------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSS 190 (249)
T ss_dssp --------GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 56888999999999999999998 799999984 78999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCcccccc
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
| +.+..+||++++ |++|++++.|++++++.
T Consensus 191 Hd~~~~~~~~d~v~~-l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 191 HDLNHTLRHAHRAWL-LKGGKMLASGRREEVLT 222 (249)
T ss_dssp SCHHHHHHHCSEEEE-EETTEEEEEEEHHHHSC
T ss_pred CCHHHHHHhCCEEEE-EECCEEEEeCCHHHHhc
Confidence 9 567789999964 99999999999888764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=297.31 Aligned_cols=187 Identities=15% Similarity=0.131 Sum_probs=144.4
Q ss_pred CcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 69 SLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.+|+++||+++|+++ .. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 5 ~~l~~~~l~~~y~~~~~~--i---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~---- 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTP--V---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR---- 70 (229)
T ss_dssp EEEEEEEEEECSSTTSCC--S---EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECSC----
T ss_pred ceEEEEEEEEEeCCCCce--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECCE----
Confidence 469999999999642 33 4 777999999999999999999999999999999999 99999999872
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
++|++|++..+...|.+| +.++.. . .. .+..++++.+++.+.+..+|.
T Consensus 71 -------------i~~v~q~~~~~~~tv~en-----------l~~~~~----~-~~---~~~~~~~~~~~l~~~~~~~~~ 118 (229)
T 2pze_A 71 -------------ISFCSQFSWIMPGTIKEN-----------IIFGVS----Y-DE---YRYRSVIKACQLEEDISKFAE 118 (229)
T ss_dssp -------------EEEECSSCCCCSBCHHHH-----------HHTTSC----C-CH---HHHHHHHHHTTCHHHHTTSTT
T ss_pred -------------EEEEecCCcccCCCHHHH-----------hhccCC----c-Ch---HHHHHHHHHhCcHHHHHhCcc
Confidence 367888765554334444 443321 0 11 123445666677665555555
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
+.++.+++. +.+||||||||++||||| ||||++||. ++|+|++|| +.
T Consensus 119 ~~~~~~~~~------~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~ 192 (229)
T 2pze_A 119 KDNIVLGEG------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 192 (229)
T ss_dssp GGGSCBCTT------CTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred cccccccCC------CCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH
Confidence 555555443 679999999999999999 999999873 789999999 44
Q ss_pred hhccccEEEEEecCCeEeecCCccccccC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+. .||++++ |++|++++.|++++++..
T Consensus 193 ~~-~~d~v~~-l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 193 LK-KADKILI-LHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp HH-HCSEEEE-EETTEEEEEECHHHHHTC
T ss_pred HH-hCCEEEE-EECCEEEEECCHHHHHhc
Confidence 54 5999964 999999999999988764
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=298.56 Aligned_cols=185 Identities=14% Similarity=0.134 Sum_probs=147.2
Q ss_pred cEEEeeeEEEeCCC---CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 70 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~---~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
||+++||+++|+++ .. + |+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++.
T Consensus 1 ml~~~~l~~~y~~~~~~~~--i---l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF--S---LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVR 68 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE--E---EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGG
T ss_pred CEEEEEEEEEeCCCCccce--e---EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECc
Confidence 58999999999651 22 4 777999999 9999999999999999999999987 47899999999875
Q ss_pred CcccccccccCCCCcc-ceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC-ccccc
Q 019066 147 GTYFLQEYTIPRGSNS-FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE-PSVIR 224 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~-~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~ 224 (346)
. ... ++.++ |++|++.. ...+.+|+.++. ... ...++++.++++.+++. +
T Consensus 69 ~------~~~-~~~i~~~v~Q~~~l-~~tv~enl~~~~-----------~~~-----~~~~~~~~~~l~~~gl~~~---- 120 (263)
T 2pjz_A 69 K------IRN-YIRYSTNLPEAYEI-GVTVNDIVYLYE-----------ELK-----GLDRDLFLEMLKALKLGEE---- 120 (263)
T ss_dssp G------CSC-CTTEEECCGGGSCT-TSBHHHHHHHHH-----------HHT-----CCCHHHHHHHHHHTTCCGG----
T ss_pred c------hHH-hhheEEEeCCCCcc-CCcHHHHHHHhh-----------hhc-----chHHHHHHHHHHHcCCChh----
Confidence 1 111 44667 77777654 223555554432 111 11245688899999998 6
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hh
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GD 280 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~ 280 (346)
.+++++.+||||||||++||||| ||||++||. ..|+|++|| +.
T Consensus 121 -------------~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~ 187 (263)
T 2pjz_A 121 -------------ILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDM 187 (263)
T ss_dssp -------------GGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGG
T ss_pred -------------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHH
Confidence 46889999999999999999999 999999984 229999999 56
Q ss_pred hhcccc-EEEEEecCCeEeecCCcccccc
Q 019066 281 LLSLTD-RARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 281 ~~~~aD-ri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+..+|| ++++ |++|++++.|++++++.
T Consensus 188 ~~~~~d~~i~~-l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 188 LNLYKEYKAYF-LVGNRLQGPISVSELLE 215 (263)
T ss_dssp GGGCTTSEEEE-EETTEEEEEEEHHHHHT
T ss_pred HHHhcCceEEE-EECCEEEEecCHHHHHh
Confidence 788999 9964 99999999999988874
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=292.43 Aligned_cols=175 Identities=14% Similarity=0.207 Sum_probs=141.6
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..+|+++||+++|++ . + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 8 ~~~l~~~~ls~~y~~--~--i---l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~- 74 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--P--V---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPIT- 74 (214)
T ss_dssp -CEEEEEEEEEESSS--E--E---EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG-
T ss_pred CceEEEEEEEEEeCC--e--E---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEhh-
Confidence 457999999999975 3 3 777999999999999999999999999999999999 99999999998863
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. .++.++|++|++..+..+ |.+|+.++.. .... . .. ++++.++++.+++.+
T Consensus 75 -----~---~~~~i~~v~q~~~~~~~~tv~enl~~~~~-----------~~~~-~-~~-~~~~~~~l~~~gl~~------ 126 (214)
T 1sgw_A 75 -----K---VKGKIFFLPEEIIVPRKISVEDYLKAVAS-----------LYGV-K-VN-KNEIMDALESVEVLD------ 126 (214)
T ss_dssp -----G---GGGGEEEECSSCCCCTTSBHHHHHHHHHH-----------HTTC-C-CC-HHHHHHHHHHTTCCC------
T ss_pred -----h---hcCcEEEEeCCCcCCCCCCHHHHHHHHHH-----------hcCC-c-hH-HHHHHHHHHHcCCCc------
Confidence 1 134578888887666554 6666654321 1110 1 12 467888999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--h
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--G 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~ 279 (346)
. ++++.+||||||||++||||| ||||++||+ |+|||++|| +
T Consensus 127 -----------~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~ 194 (214)
T 1sgw_A 127 -----------L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL 194 (214)
T ss_dssp -----------T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC
T ss_pred -----------C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6 778999999999999999999 999999995 789999999 5
Q ss_pred hhhccccEEEEEecCCeE
Q 019066 280 DLLSLTDRARIRTYLGEL 297 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~i 297 (346)
.+..+||++ + +..|+|
T Consensus 195 ~~~~~~d~v-~-~~~~~~ 210 (214)
T 1sgw_A 195 SYCDVNENL-H-KYSTKI 210 (214)
T ss_dssp TTSSEEEEG-G-GGBC--
T ss_pred HHHHhCCEE-E-EeCCcc
Confidence 788899999 4 777776
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=296.59 Aligned_cols=186 Identities=13% Similarity=0.164 Sum_probs=137.8
Q ss_pred cEEEeeeEEEeCC-CCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~-~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
+|+++||+++|++ +.. + |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 3 ~l~~~~l~~~y~~~~~~--v---l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~----- 67 (237)
T 2cbz_A 3 SITVRNATFTWARSDPP--T---LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKGS----- 67 (237)
T ss_dssp CEEEEEEEEESCTTSCC--S---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECSC-----
T ss_pred eEEEEEEEEEeCCCCCc--e---eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECCE-----
Confidence 5999999999974 223 4 777999999999999999999999999999999999 99999999882
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
++|++|++..+...|. +|+.++... ... ...++++.+++.+.+..+|.|
T Consensus 68 ------------i~~v~Q~~~~~~~tv~-----------enl~~~~~~----~~~----~~~~~~~~~~l~~~~~~~~~~ 116 (237)
T 2cbz_A 68 ------------VAYVPQQAWIQNDSLR-----------ENILFGCQL----EEP----YYRSVIQACALLPDLEILPSG 116 (237)
T ss_dssp ------------EEEECSSCCCCSEEHH-----------HHHHTTSCC----CTT----HHHHHHHHTTCHHHHTTSTTG
T ss_pred ------------EEEEcCCCcCCCcCHH-----------HHhhCcccc----CHH----HHHHHHHHHhhHHHHHhcccc
Confidence 3678887643322244 444443210 111 122334444443323223334
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC------------------CceEEEEec--h
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD------------------DKPVVVVTH--G 279 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~------------------g~tviiiTH--~ 279 (346)
+++.+ ++++.+||||||||++||||| ||||++||+ |+|+|+||| +
T Consensus 117 ~~~~~------~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~ 190 (237)
T 2cbz_A 117 DRTEI------GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMS 190 (237)
T ss_dssp GGSEE------STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCST
T ss_pred ccccc------cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChH
Confidence 44433 455889999999999999999 999999762 689999999 4
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
.+ ..||++++ |++|++++.|++++++..
T Consensus 191 ~~-~~~d~v~~-l~~G~i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 191 YL-PQVDVIIV-MSGGKISEMGSYQELLAR 218 (237)
T ss_dssp TG-GGSSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HH-HhCCEEEE-EeCCEEEEeCCHHHHhhc
Confidence 44 46999964 999999999999888654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=359.78 Aligned_cols=227 Identities=11% Similarity=0.109 Sum_probs=177.0
Q ss_pred hhhHHHHHHhhhhhhhhcc---------CCCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHH
Q 019066 48 RRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSL 118 (346)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTL 118 (346)
....++.++++.+++.... ....|+++||+|+|++.....+ |+|+||+|++||++||+||||||||||
T Consensus 999 ~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~---l~~vsl~i~~Ge~v~ivG~sGsGKSTl 1075 (1284)
T 3g5u_A 999 VSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV---LQGLSLEVKKGQTLALVGSSGCGKSTV 1075 (1284)
T ss_dssp HHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS---BSSCCEEECSSSEEEEECSSSTTHHHH
T ss_pred HHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee---ecceeEEEcCCCEEEEECCCCCCHHHH
Confidence 3456677887766543221 1235999999999975432225 666999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhcc
Q 019066 119 VNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIR 198 (346)
Q Consensus 119 l~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~ 198 (346)
+++|.|+++ |++|+|.++|+++.... . ...|+.+++++|++..+.+ ++.+|+.++...
T Consensus 1076 ~~~l~g~~~-----p~~G~I~i~g~~i~~~~---~-~~~r~~i~~v~Q~~~l~~~-----------ti~eNi~~~~~~-- 1133 (1284)
T 3g5u_A 1076 VQLLERFYD-----PMAGSVFLDGKEIKQLN---V-QWLRAQLGIVSQEPILFDC-----------SIAENIAYGDNS-- 1133 (1284)
T ss_dssp HHHHTTSSC-----CSEEEEESSSSCTTSSC---H-HHHTTSCEEEESSCCCCSS-----------BHHHHHTCCCSS--
T ss_pred HHHHhcCcC-----CCCCEEEECCEEcccCC---H-HHHHhceEEECCCCccccc-----------cHHHHHhccCCC--
Confidence 999999999 99999999999986211 1 1124567777777655443 455555554321
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC
Q 019066 199 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD 269 (346)
Q Consensus 199 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~ 269 (346)
....++++.++++.+++.+.+..+|+||+|.|||+| .+||||||||++||||| ||||++||.
T Consensus 1134 ---~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G------~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1134 ---RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG------TQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204 (1284)
T ss_dssp ---CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS------CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCH
T ss_pred ---CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC------CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 011235677889999999999999999999999984 59999999999999999 999999983
Q ss_pred ---------------CceEEEEec--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 270 ---------------DKPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 270 ---------------g~tviiiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
|+|+|+||| +.+ ..||||++ |++|+|++.|++++++...
T Consensus 1205 ~~~~~i~~~l~~~~~~~tvi~isH~l~~i-~~~dri~v-l~~G~i~~~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1205 ESEKVVQEALDKAREGRTCIVIAHRLSTI-QNADLIVV-IQNGKVKEHGTHQQLLAQK 1260 (1284)
T ss_dssp HHHHHHHHHHHHHSSSSCEEEECSCTTGG-GSCSEEEE-EETBEEEEEECHHHHHHSC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecCHHHH-HcCCEEEE-EECCEEEEECCHHHHHhCC
Confidence 899999999 455 45999965 9999999999999998763
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=289.35 Aligned_cols=183 Identities=15% Similarity=0.112 Sum_probs=129.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++|+++||++.+ . . + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 38 ~~~l~~~~l~~~~--~-~--v---l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~---- 100 (290)
T 2bbs_A 38 DDSLSFSNFSLLG--T-P--V---LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSGR---- 100 (290)
T ss_dssp ------------C--C-C--S---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEECCSC----
T ss_pred CceEEEEEEEEcC--c-e--E---EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCE----
Confidence 3579999999864 2 2 3 777999999999999999999999999999999999 99999999872
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
++|++|+...+...|.+| +. +.. .. . .++.++++.+++.+.+..+|+
T Consensus 101 -------------i~~v~Q~~~l~~~tv~en-----------l~-~~~----~~-~---~~~~~~~~~~~l~~~l~~~~~ 147 (290)
T 2bbs_A 101 -------------ISFCSQNSWIMPGTIKEN-----------II-GVS----YD-E---YRYRSVIKACQLEEDISKFAE 147 (290)
T ss_dssp -------------EEEECSSCCCCSSBHHHH-----------HH-TTC----CC-H---HHHHHHHHHTTCHHHHHTSTT
T ss_pred -------------EEEEeCCCccCcccHHHH-----------hh-Ccc----cc-h---HHHHHHHHHhChHHHHHhccc
Confidence 367888765544334444 43 111 01 1 223445666777665555666
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GD 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~ 280 (346)
++++.+++. +.+||||||||++||||| ||||++||. |+|+|+||| +.
T Consensus 148 ~~~~~~~~~------~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~ 221 (290)
T 2bbs_A 148 KDNIVLGEG------GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH 221 (290)
T ss_dssp GGGCBC----------CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH
T ss_pred cccchhcCc------cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHH
Confidence 666655544 679999999999999999 999999873 789999999 44
Q ss_pred hhccccEEEEEecCCeEeecCCcccccc
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFD 308 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~ 308 (346)
+. .||+++ +|++|++++.|++++++.
T Consensus 222 ~~-~~d~i~-~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 222 LK-KADKIL-ILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HH-HSSEEE-EEETTEEEEEECHHHHHH
T ss_pred HH-cCCEEE-EEECCeEEEeCCHHHHhh
Confidence 54 599996 499999999999988864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-32 Score=281.98 Aligned_cols=178 Identities=15% Similarity=0.141 Sum_probs=142.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++|+++.|++. . |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 355 ~~~l~~~~l~~~~~~~--~-----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~------ 416 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF--K-----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEWD------ 416 (607)
T ss_dssp CEEEEECCEEEECSSC--E-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCCC------
T ss_pred ceEEEEeceEEEecce--E-----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEEe------
Confidence 3579999999999652 2 777999999999999999999999999999999999 999999761
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
..++|++|+......+ |.+++...... .....+++.++++.+++.+
T Consensus 417 -----------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~----------------~~~~~~~~~~~l~~~~l~~------ 463 (607)
T 3bk7_A 417 -----------LTVAYKPQYIKAEYEGTVYELLSKIDSS----------------KLNSNFYKTELLKPLGIID------ 463 (607)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHHH----------------HHHCHHHHHHTHHHHTCTT------
T ss_pred -----------eEEEEEecCccCCCCCcHHHHHHhhhcc----------------CCCHHHHHHHHHHHcCCch------
Confidence 1357888886543333 54433221000 0011356788999999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+|||||||||+||||| ||||++||. |.|+|+|||
T Consensus 464 -----------~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 532 (607)
T 3bk7_A 464 -----------LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532 (607)
T ss_dssp -----------TTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46899999999999999999999 999999983 789999999
Q ss_pred hhhhccccEEEEEecC--CeEeecCCcccccc
Q 019066 279 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 308 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 308 (346)
+++..+|||+++ |++ |+++..|++++++.
T Consensus 533 ~~~~~~adrv~v-l~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 533 LMIDYVSDRLIV-FEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEE-EcCCcceEEecCCHHHHHh
Confidence 578889999965 875 78888899887764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-32 Score=279.34 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=140.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++|+++.|++ . . |+++||+|++||++||+||||||||||+|+|+|+++ |++|+|.+.
T Consensus 285 ~~~l~~~~l~~~~~~--~--~---l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~~------ 346 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS--F--R---LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEWD------ 346 (538)
T ss_dssp CEEEEECCEEEEETT--E--E---EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCCC------
T ss_pred CeEEEEeeEEEEECC--E--E---EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEEC------
Confidence 457999999999965 2 2 777999999999999999999999999999999999 999999751
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
..++|++|+......+ |.+++...... . ....+++.++++.+++.+
T Consensus 347 -----------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~---------~-------~~~~~~~~~~l~~~~l~~------ 393 (538)
T 1yqt_A 347 -----------LTVAYKPQYIKADYEGTVYELLSKIDAS---------K-------LNSNFYKTELLKPLGIID------ 393 (538)
T ss_dssp -----------CCEEEECSSCCCCCSSBHHHHHHHHHHH---------H-------HTCHHHHHHTTTTTTCGG------
T ss_pred -----------ceEEEEecCCcCCCCCcHHHHHHhhhcc---------C-------CCHHHHHHHHHHHcCChh------
Confidence 1357888876543332 43333211000 0 001346778899999976
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+||||||||++||||| ||||++||. |.|||+|||
T Consensus 394 -----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~ 462 (538)
T 1yqt_A 394 -----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 462 (538)
T ss_dssp -----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46889999999999999999999 999999983 889999999
Q ss_pred hhhhccccEEEEEecC--CeEeecCCcccccc
Q 019066 279 GDLLSLTDRARIRTYL--GELLGIPPAKQIFD 308 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~--G~iv~~g~~~~l~~ 308 (346)
+++..+||||++ |++ |+++..|++++++.
T Consensus 463 ~~~~~~~drv~v-l~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 463 LMIDYVSDRLMV-FEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCEEHHH
T ss_pred HHHHHhCCEEEE-EeCCcceEeecCCHHHHHh
Confidence 578889999965 885 78888899887753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-32 Score=279.72 Aligned_cols=176 Identities=10% Similarity=0.064 Sum_probs=135.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++|+++.|++ . . |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++..+
T Consensus 267 ~~~l~~~~l~~~~~~--~--~---l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~~i-- 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD--F--Q---LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQIL-- 332 (538)
T ss_dssp CEEEEECCEEEEETT--E--E---EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCCCE--
T ss_pred cceEEEcceEEEECC--E--E---EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCeee--
Confidence 457999999999975 2 2 666899999999999999999999999999999999 9999999876544
Q ss_pred cccccccccCCCCccceeecccccc-cchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~-~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
++++|+..... ..|.+++.... .. ... .....+.++++.+++.+
T Consensus 333 --------------~~~~q~~~~~~~~tv~~~l~~~~-----------~~--~~~--~~~~~~~~~l~~~~l~~------ 377 (538)
T 3ozx_A 333 --------------SYKPQRIFPNYDGTVQQYLENAS-----------KD--ALS--TSSWFFEEVTKRLNLHR------ 377 (538)
T ss_dssp --------------EEECSSCCCCCSSBHHHHHHHHC-----------SS--TTC--TTSHHHHHTTTTTTGGG------
T ss_pred --------------EeechhcccccCCCHHHHHHHhh-----------hh--ccc--hhHHHHHHHHHHcCCHH------
Confidence 46666544322 23555543210 00 000 11245678889999987
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH-- 278 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH-- 278 (346)
..++++.+|||||||||+||||| ||||++||. |.|||+|||
T Consensus 378 -----------~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 378 -----------LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp -----------CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred -----------HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46899999999999999999999 999999983 789999999
Q ss_pred hhhhccccEEEEEecC--CeEeecCCcc
Q 019066 279 GDLLSLTDRARIRTYL--GELLGIPPAK 304 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~--G~iv~~g~~~ 304 (346)
+.+..+||||++ |++ |.+...+++.
T Consensus 447 ~~~~~~aDri~v-l~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 447 SIHDYIADRIIV-FKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHCSEEEE-EEEETTTEEEECCCE
T ss_pred HHHHHhCCEEEE-EeCCcceeccCCChH
Confidence 578889999965 875 4444445443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=283.83 Aligned_cols=208 Identities=16% Similarity=0.193 Sum_probs=133.4
Q ss_pred CCcEEEeeeEEEeCCC-CceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 68 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~-~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++|+++||+|+|++. .. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|. ..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~--i---L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~ 737 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKP--Q---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CR 737 (986)
T ss_dssp SEEEEEEEEEECCTTCSSC--S---EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CC
T ss_pred CceEEEEeeEEEeCCCCce--e---eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cc
Confidence 4589999999999753 23 3 777999999999999999999999999999999999 99999999863 11
Q ss_pred Ccccccccc---------------------------cCCCCccceeec----------------------------cccc
Q 019066 147 GTYFLQEYT---------------------------IPRGSNSFSLYD----------------------------TRSL 171 (346)
Q Consensus 147 ~~~~~~~~~---------------------------~~r~~i~~~~~d----------------------------~~~~ 171 (346)
..+..+... ..+....+...+ ...+
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 111111100 000000000000 0000
Q ss_pred c-cc-hhhchHhhH-----HHHHhhhhcchhh------------------ccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 172 S-DD-ASDNINMIK-----LWIMEGVRHGELV------------------IRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 172 ~-~~-v~qn~~~~~-----~~v~~~i~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
. .+ +.+|+.+.. .++.+|+.++... .........++++.++++.+||....
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~---- 893 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI---- 893 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH----
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh----
Confidence 0 00 112221100 0111221111000 00000111246788999999997521
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhh
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~ 282 (346)
..++++.+||||||||++||||| ||||++||. +.|||+||| +++.
T Consensus 894 -----------~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~ 962 (986)
T 2iw3_A 894 -----------VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTK 962 (986)
T ss_dssp -----------HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHT
T ss_pred -----------hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHH
Confidence 14778999999999999999999 999999984 779999999 5788
Q ss_pred ccccEEEEEecCCeEeecCC
Q 019066 283 SLTDRARIRTYLGELLGIPP 302 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~ 302 (346)
.+||++++ |++|+++..|+
T Consensus 963 ~l~DrViv-L~~G~Iv~~G~ 981 (986)
T 2iw3_A 963 NLTEEVWA-VKDGRMTPSGH 981 (986)
T ss_dssp TTCCEEEC-CBTTBCCC---
T ss_pred HhCCEEEE-EECCEEEEeCC
Confidence 89999975 99999998774
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=269.97 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=134.4
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCC-----cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~G-----e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
++++++|++... + ++++||++.+| |+++|+||||||||||+++|+|+++ |++|+. +.
T Consensus 350 ~~~~~~y~~~~~--~---l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~------~~-- 411 (608)
T 3j16_B 350 ASRAFSYPSLKK--T---QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQD------IP-- 411 (608)
T ss_dssp SSSCCEECCEEE--E---CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCC------CC--
T ss_pred cceeEEecCccc--c---cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcC------cc--
Confidence 778889975433 4 56699999999 7899999999999999999999999 999862 11
Q ss_pred ccccccccCCCCccceeecccccc-cchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLS-DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~-~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+..+++++|+..... ..|.++.. .... .. ....+.+.++++.+++.+
T Consensus 412 ---------~~~i~~~~q~~~~~~~~tv~e~~~-----------~~~~--~~---~~~~~~~~~~l~~l~l~~------- 459 (608)
T 3j16_B 412 ---------KLNVSMKPQKIAPKFPGTVRQLFF-----------KKIR--GQ---FLNPQFQTDVVKPLRIDD------- 459 (608)
T ss_dssp ---------SCCEEEECSSCCCCCCSBHHHHHH-----------HHCS--ST---TTSHHHHHHTHHHHTSTT-------
T ss_pred ---------CCcEEEecccccccCCccHHHHHH-----------HHhh--cc---cccHHHHHHHHHHcCChh-------
Confidence 123467777654332 23444321 1000 00 011245678899999987
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
..++++.+|||||||||+||||| ||||++||. |.|+|+||| +
T Consensus 460 ----------~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~ 529 (608)
T 3j16_B 460 ----------IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529 (608)
T ss_dssp ----------TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred ----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 56899999999999999999999 999999983 899999999 5
Q ss_pred hhhccccEEEEEecC--CeEeecCCccccccC
Q 019066 280 DLLSLTDRARIRTYL--GELLGIPPAKQIFDI 309 (346)
Q Consensus 280 ~~~~~aDri~v~l~~--G~iv~~g~~~~l~~~ 309 (346)
.+..+||||++ |++ |+++..|+|++++..
T Consensus 530 ~~~~~aDrviv-l~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 530 MATYLADKVIV-FEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHCSEEEE-CEEETTTEEECCCCEEHHHH
T ss_pred HHHHhCCEEEE-EeCCCCeEEecCChHHHhhh
Confidence 78889999965 986 899999999988753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-31 Score=273.69 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=125.2
Q ss_pred cEEE--------eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE---
Q 019066 70 LTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--- 138 (346)
Q Consensus 70 ~l~~--------~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I--- 138 (346)
+|++ +||+++|++... + |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~--~---l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~~~ 151 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAF--V---LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDNDS 151 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCC--E---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTCCC
T ss_pred eEEEecCCccccCCeEEEECCCCe--e---eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCccccc
Confidence 5888 999999976432 4 66799 999999999999999999999999999999 999985
Q ss_pred ------EECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHH
Q 019066 139 ------TYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCK 212 (346)
Q Consensus 139 ------~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 212 (346)
.++|.++.. . .......+..+++++|.... .+.++..++.+++... ...+++.++
T Consensus 152 ~~~~~~~~~G~~~~~-~-~~~~~~~~~~i~~~~q~~~~-------~~~~~~~tv~e~l~~~----------~~~~~~~~~ 212 (607)
T 3bk7_A 152 WDNVIRAFRGNELQN-Y-FERLKNGEIRPVVKPQYVDL-------LPKAVKGKVRELLKKV----------DEVGKFEEV 212 (607)
T ss_dssp HHHHHHHTTTSTHHH-H-HHHHHHTSCCCEEECSCGGG-------GGGTCCSBHHHHHHHT----------CCSSCHHHH
T ss_pred cchhhheeCCEehhh-h-hhhhhhhhcceEEeechhhh-------chhhccccHHHHhhhh----------HHHHHHHHH
Confidence 334433310 0 00000011122333332211 1111111344444210 012457789
Q ss_pred HHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC--------------
Q 019066 213 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------- 269 (346)
Q Consensus 213 l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------- 269 (346)
++.+||.+ .+++++.+||||||||++||||| ||||++||.
T Consensus 213 L~~lgL~~-----------------~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~ 275 (607)
T 3bk7_A 213 VKELELEN-----------------VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA 275 (607)
T ss_dssp HHHTTCTT-----------------GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCc-----------------hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 99999987 56899999999999999999999 999999984
Q ss_pred --CceEEEEec--hhhhccccEEEEEecCC
Q 019066 270 --DKPVVVVTH--GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 270 --g~tviiiTH--~~~~~~aDri~v~l~~G 295 (346)
|.|||+||| +.+..+||||++ |+++
T Consensus 276 ~~g~tvIivsHdl~~~~~~adri~v-l~~~ 304 (607)
T 3bk7_A 276 NEGKAVLVVEHDLAVLDYLSDVIHV-VYGE 304 (607)
T ss_dssp HTTCEEEEECSCHHHHHHHCSEEEE-EESC
T ss_pred hcCCEEEEEecChHHHHhhCCEEEE-ECCC
Confidence 899999999 567889999964 8754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-31 Score=270.60 Aligned_cols=177 Identities=15% Similarity=0.154 Sum_probs=121.7
Q ss_pred EEE-eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE---------EE
Q 019066 71 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 140 (346)
Q Consensus 71 l~~-~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I---------~~ 140 (346)
.++ +||+|+|++... + |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~~--~---l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAF--V---LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTCC--E---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCccc--c---ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 466 699999976432 4 66699 999999999999999999999999999999 999985 23
Q ss_pred CceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 141 NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 141 ~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
+|.++.. ........+..+++++|....... +...++.+++.. ....+++.++++.+|+..
T Consensus 90 ~g~~~~~--~~~~~~~~~~~~~~~~q~~~~~~~-------~~~~~v~e~~~~----------~~~~~~~~~~l~~lgl~~ 150 (538)
T 1yqt_A 90 RGNELQN--YFEKLKNGEIRPVVKPQYVDLIPK-------AVKGKVIELLKK----------ADETGKLEEVVKALELEN 150 (538)
T ss_dssp TTSTHHH--HHHHHHTTSCCCEEECSCGGGSGG-------GCCSBHHHHHHH----------HCSSSCHHHHHHHTTCTT
T ss_pred CCccHHH--HHHHHHHHhhhhhhhhhhhhhcch-------hhhccHHHHHhh----------hhHHHHHHHHHHHcCCCh
Confidence 4433210 000000011123344443221111 000122233221 111245778999999987
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
..++++.+|||||||||+||||| ||||++||. |.|||+
T Consensus 151 -----------------~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~ 213 (538)
T 1yqt_A 151 -----------------VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLV 213 (538)
T ss_dssp -----------------TTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -----------------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 46889999999999999999999 999999984 899999
Q ss_pred Eec--hhhhccccEEEEEecCC
Q 019066 276 VTH--GDLLSLTDRARIRTYLG 295 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G 295 (346)
||| +.+..+||||++ |++|
T Consensus 214 vsHd~~~~~~~~dri~v-l~~~ 234 (538)
T 1yqt_A 214 VEHDLAVLDYLSDIIHV-VYGE 234 (538)
T ss_dssp ECSCHHHHHHHCSEEEE-EEEE
T ss_pred EeCCHHHHHHhCCEEEE-EcCc
Confidence 999 578889999964 8754
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-30 Score=266.10 Aligned_cols=190 Identities=16% Similarity=0.213 Sum_probs=111.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHH---------------------HHHhhhccCCCCCCCC-------ceEEECce
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFASER-------AQVTYNSS 143 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl---------------------~~L~gl~~~~~~~p~~-------G~I~~~g~ 143 (346)
|+||||+|++||++||+||||||||||+ +++.++.. |+. |.|.++|.
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-----~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-----PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------CCCSEEESCCCEEEESSC
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----CCccceeccccceEecCc
Confidence 6669999999999999999999999998 88888888 774 44555554
Q ss_pred eCCCcccccccccCCCCccceeeccccc------ccchhh--chHhhH-HHHHhhhhcchhhc-cCCChHHHH------H
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTRSL------SDDASD--NINMIK-LWIMEGVRHGELVI-RRSDSSSLR------N 207 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~~~------~~~v~q--n~~~~~-~~v~~~i~~~~~~~-~~~~~~~~~------~ 207 (346)
+.. ...+..+++++|....+ .+.+++ +...+. .++.+|+.+..... ........+ .
T Consensus 109 ~~~--------~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (670)
T 3ux8_A 109 TTS--------RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIR 180 (670)
T ss_dssp C-------------CCBHHHHTTCC-------------------------CC--------------------------CH
T ss_pred hhh--------ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHH
Confidence 432 11233445555433221 011111 111111 24555554421100 000000000 1
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC-------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~------- 269 (346)
....+++.+||.+. .+++++.+||||||||++||||| ||||++||+
T Consensus 181 ~~~~~l~~~gL~~~----------------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~ 244 (670)
T 3ux8_A 181 DRLGFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLI 244 (670)
T ss_dssp HHHHHHHHTTCTTC----------------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHH
T ss_pred HHHHHHHHcCCchh----------------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHH
Confidence 12245888999763 25889999999999999999998 999999985
Q ss_pred ---------CceEEEEech-hhhccccEEEEEe------cCCeEeecCCccccccCCC
Q 019066 270 ---------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 270 ---------g~tviiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 311 (346)
|.|||+|||+ .+...|||+++ | ++|++++.|++++++..+.
T Consensus 245 ~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~-l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 245 ATLKSMRDLGNTLIVVEHDEDTMLAADYLID-IGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHCSEEEE-ECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHhhCCEEEE-ecccccccCCEEEEecCHHHHhcCch
Confidence 8999999993 34456999965 8 8999999999999987754
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=255.23 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=79.5
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC-----
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 269 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 269 (346)
+++.+++..+++... .+++++.+|||||||||+||||| ||||++||.
T Consensus 521 ~~~~~~l~~~~l~~~----------------~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~ 584 (670)
T 3ux8_A 521 KRKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 584 (670)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCchh----------------hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 456778889999752 25788999999999999999998 999999984
Q ss_pred -----------CceEEEEech-hhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHHHH
Q 019066 270 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELIIV 322 (346)
Q Consensus 270 -----------g~tviiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~ 322 (346)
|.|||+|||+ .+...||||++ | ++|+|++.|+++++...+. .++..++...
T Consensus 585 i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~-l~~~~g~~~G~i~~~g~~~~~~~~~~-~~~~~~~~~~ 653 (670)
T 3ux8_A 585 LLDVLHRLVDNGDTVLVIEHNLDVIKTADYIID-LGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLKPI 653 (670)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-EESSSGGGCCEEEEEECHHHHHTCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEE-ecCCcCCCCCEEEEecCHHHHHhCCc-cHHHHHHHHh
Confidence 8999999993 33456999965 9 8999999999999976543 4556665543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-28 Score=259.63 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=128.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|...|++++|++.. + |+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+..
T Consensus 435 ~L~~~~ls~~yg~~~---i---L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-----------G~i--~g~~~~--- 492 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI---L---LNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------GQV--DGFPTQ--- 492 (986)
T ss_dssp EEEEEEEEEEETTEE---E---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-----------TCS--TTCCCT---
T ss_pred eeEEeeEEEEECCEE---e---EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-----------CCc--CCCccc---
Confidence 477779999997532 4 777999999999999999999999999999995 111 222211
Q ss_pred cccccccCCCCccceeecc-cccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDT-RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~-~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++|++|+. ..+..+ ++.+++.+. ... . ++++.++++.+|+...
T Consensus 493 -------~~~~~~~v~q~~~~~~~~l----------tv~e~l~~~---~~~---~--~~~v~~~L~~lgL~~~------- 540 (986)
T 2iw3_A 493 -------EECRTVYVEHDIDGTHSDT----------SVLDFVFES---GVG---T--KEAIKDKLIEFGFTDE------- 540 (986)
T ss_dssp -------TTSCEEETTCCCCCCCTTS----------BHHHHHHTT---CSS---C--HHHHHHHHHHTTCCHH-------
T ss_pred -------cceeEEEEcccccccccCC----------cHHHHHHHh---hcC---H--HHHHHHHHHHcCCChh-------
Confidence 000123444442 112111 333444320 001 1 5678899999999632
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-------------CceEEEEec--hhhhcc
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-------------DKPVVVVTH--GDLLSL 284 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-------------g~tviiiTH--~~~~~~ 284 (346)
..++++.+||||||||++||||| ||||++||. |.|+|+||| +.+..+
T Consensus 541 ---------~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~ 611 (986)
T 2iw3_A 541 ---------MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNV 611 (986)
T ss_dssp ---------HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHH
T ss_pred ---------hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHh
Confidence 46889999999999999999999 999999984 899999999 578889
Q ss_pred ccEEEEEecCCeEe-ecCCcccccc
Q 019066 285 TDRARIRTYLGELL-GIPPAKQIFD 308 (346)
Q Consensus 285 aDri~v~l~~G~iv-~~g~~~~l~~ 308 (346)
||++++ |++|+++ ..|++++++.
T Consensus 612 adrii~-L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 612 CEYIIN-YEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CSEEEE-EETTEEEEEESCHHHHHH
T ss_pred CCEEEE-EECCeeecCCCCHHHHHh
Confidence 999965 9999997 5798887754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-29 Score=255.26 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=115.1
Q ss_pred eeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE-----------ECce
Q 019066 75 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNSS 143 (346)
Q Consensus 75 ~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~-----------~~g~ 143 (346)
|++++|+.... . |++++ .+++||++||+||||||||||+|+|+|+++ |++|+|. +.|.
T Consensus 82 ~~~~~Y~~~~~--~---l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~~~~~~~~~~g~ 150 (608)
T 3j16_B 82 HVTHRYSANSF--K---LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPEWQEIIKYFRGS 150 (608)
T ss_dssp TEEEECSTTSC--E---EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSCHHHHHHHTTTS
T ss_pred CeEEEECCCce--e---ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccchhhhhheecCh
Confidence 56788876544 2 45466 689999999999999999999999999999 9999873 1111
Q ss_pred eCCCcccccccccCCCCccceeecccccccchhhchHhhH---HHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 144 VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK---LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 144 ~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~---~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
++.. +.. ......+..... ..++.+.+.... .++.+++.. . .....+++.++++.+++.+
T Consensus 151 ~~~~-~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~l~~-----~---~~~~~~~~~~~l~~~gl~~ 213 (608)
T 3j16_B 151 ELQN-YFT---KMLEDDIKAIIK-----PQYVDNIPRAIKGPVQKVGELLKL-----R---MEKSPEDVKRYIKILQLEN 213 (608)
T ss_dssp THHH-HHH---HHHHTSCCCEEE-----CCCTTTHHHHCSSSSSHHHHHHHH-----H---CCSCHHHHHHHHHHHTCTG
T ss_pred hhhh-hhh---HHHHHhhhhhhc-----hhhhhhhhhhhcchhhHHHHHHhh-----h---hhhHHHHHHHHHHHcCCcc
Confidence 1100 000 000000000000 000000000000 011111110 0 0112367889999999987
Q ss_pred ccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEE
Q 019066 221 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVV 275 (346)
Q Consensus 221 ~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvii 275 (346)
.+++++.+||||||||++||||| ||||++||. |.|||+
T Consensus 214 -----------------~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~ 276 (608)
T 3j16_B 214 -----------------VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276 (608)
T ss_dssp -----------------GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEE
T ss_pred -----------------hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 56999999999999999999999 999999984 899999
Q ss_pred Eec--hhhhccccEEEEEecCCe
Q 019066 276 VTH--GDLLSLTDRARIRTYLGE 296 (346)
Q Consensus 276 iTH--~~~~~~aDri~v~l~~G~ 296 (346)
||| +.+..+||||++ |++|.
T Consensus 277 vtHdl~~~~~~~drv~v-l~~~~ 298 (608)
T 3j16_B 277 VEHDLSVLDYLSDFVCI-IYGVP 298 (608)
T ss_dssp ECSCHHHHHHHCSEEEE-EESCT
T ss_pred EeCCHHHHHHhCCEEEE-EeCCc
Confidence 999 578889999965 87765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-28 Score=249.23 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=116.2
Q ss_pred eeeEEEeCCCCceecccCceeeeEEec-CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE-----------EEC
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVP-KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 141 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~-~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I-----------~~~ 141 (346)
++.+.+|+.+. ++...|.+. +||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 35677897655 333555555 999999999999999999999999999 999998 455
Q ss_pred ceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
|+++.. +. +........+...+ .++.+...++..++.+++. ....++++.++++.+++..
T Consensus 71 g~~i~~-~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~l~----------~~~~~~~~~~~l~~l~l~~- 130 (538)
T 3ozx_A 71 GKEIYN-YF-KELYSNELKIVHKI-------QYVEYASKFLKGTVNEILT----------KIDERGKKDEVKELLNMTN- 130 (538)
T ss_dssp TSTTHH-HH-HHHHTTCCCEEEEC-------SCTTGGGTTCCSBHHHHHH----------HHCCSSCHHHHHHHTTCGG-
T ss_pred CeeHHH-HH-HHHhhcccchhhcc-------chhhhhhhhccCcHHHHhh----------cchhHHHHHHHHHHcCCch-
Confidence 555420 00 00000000000111 1111111111112222211 0111235678899999987
Q ss_pred cccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEe
Q 019066 222 VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVT 277 (346)
Q Consensus 222 ~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiT 277 (346)
..++++.+|||||||||+||||| ||||++||. |+|||+||
T Consensus 131 ----------------~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vs 194 (538)
T 3ozx_A 131 ----------------LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVD 194 (538)
T ss_dssp ----------------GTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred ----------------hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 56889999999999999999999 999999984 89999999
Q ss_pred c--hhhhccccEEEEEecCCe
Q 019066 278 H--GDLLSLTDRARIRTYLGE 296 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~ 296 (346)
| +.+..+||+|++ |++|.
T Consensus 195 Hdl~~~~~~~d~i~v-l~~~~ 214 (538)
T 3ozx_A 195 HDLIVLDYLTDLIHI-IYGES 214 (538)
T ss_dssp SCHHHHHHHCSEEEE-EEEET
T ss_pred eChHHHHhhCCEEEE-ecCCc
Confidence 9 578889999965 87653
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-26 Score=240.51 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=80.4
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC-----
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 269 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 269 (346)
+++.++++.++|... .+++++.+||||||||++|||+| ||||++||.
T Consensus 708 ~~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 771 (842)
T 2vf7_A 708 FRALDTLREVGLGYL----------------RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVER 771 (842)
T ss_dssp HHHHHHHHHTTCTTS----------------BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcc----------------cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHH
Confidence 567899999999762 14788999999999999999998 999999973
Q ss_pred -----------CceEEEEec--hhhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 019066 270 -----------DKPVVVVTH--GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 270 -----------g~tviiiTH--~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|.|||+||| +.+ ..||||++ | ++|+|++.|++++++..+. .++..++.
T Consensus 772 l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~-L~p~~g~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 838 (842)
T 2vf7_A 772 LQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLD-IGPGAGEDGGRLVAQGTPAEVAQAAG-SVTAPYLR 838 (842)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEE-ECSSSGGGCCSEEEEECHHHHTTCTT-CSSHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEE-ECCCCCCCCCEEEEEcCHHHHHhCch-hHHHHHHH
Confidence 899999999 455 78999965 9 7999999999999988765 45666654
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-26 Score=245.12 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC----
Q 019066 206 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD---- 269 (346)
Q Consensus 206 ~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~---- 269 (346)
..++.++|+.+||... .+++++.+||||||||++||||| ||||++||.
T Consensus 782 ~~~~~~~L~~vGL~~~----------------~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~ 845 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYV----------------KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVR 845 (916)
T ss_dssp HHHHHHHHHHTTGGGS----------------BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHHHHcCCchh----------------hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHH
Confidence 3567789999999752 25788999999999999999998 999999983
Q ss_pred ------------CceEEEEech-hhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 019066 270 ------------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 270 ------------g~tviiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|.|||+|||+ .+...||+|++ | ++|+|++.|++++++..+ ++|+..++.
T Consensus 846 ~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIiv-Lgp~gg~~~G~Iv~~Gtpeel~~~~-~syt~~~l~ 913 (916)
T 3pih_A 846 KLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIID-LGPEGGKEGGYIVATGTPEEIAKNP-HSYTGRFLK 913 (916)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-EESSSGGGCCEEEEEESHHHHHSCT-TCHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE-ecCCCCCCCCEEEEEcCHHHHHhCC-chHHHHHHH
Confidence 8999999993 33345999965 9 999999999999999886 577777764
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-30 Score=254.84 Aligned_cols=177 Identities=11% Similarity=-0.021 Sum_probs=131.1
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-e-EEECceeC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSSVG 145 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~-I~~~g~~i 145 (346)
.++++++||++.|+ + +||++++|++++|+||||||||||+|+|+|++. |++| + |+++| +.
T Consensus 116 ~~mi~~~nl~~~y~---------~---vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg-~~ 177 (460)
T 2npi_A 116 HTMKYIYNLHFMLE---------K---IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINL-DP 177 (460)
T ss_dssp CTHHHHHHHHHHHH---------H---HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEEC-CT
T ss_pred cchhhhhhhhehhh---------c---CceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcC-Cc
Confidence 56899999998884 2 899999999999999999999999999999999 9999 9 99987 21
Q ss_pred CCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 146 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 146 ~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
++.+++++|+...+.-. . ..++.+|+ ++....... ...+++.++++.+|+.+
T Consensus 178 ------------~~~i~~vpq~~~l~~~~--~-----~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~----- 229 (460)
T 2npi_A 178 ------------QQPIFTVPGCISATPIS--D-----ILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLER----- 229 (460)
T ss_dssp ------------TSCSSSCSSCCEEEECC--S-----CCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSS-----
T ss_pred ------------cCCeeeeccchhhcccc--c-----ccchhhhh-cccccccCc---chHHHHHHHHHHhCCCc-----
Confidence 33567788876432110 0 00222333 322110000 01233455677788876
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHh--c-------------Cc-cccCCCC------------CceEEEEe
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT--F-------------NC-PYLSFRD------------DKPVVVVT 277 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArA--L-------------DE-Pts~Ld~------------g~tviiiT 277 (346)
..+ +.+||||||||++|||| | || ||++||. +.|+|+||
T Consensus 230 ------------~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVt 295 (460)
T 2npi_A 230 ------------INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVL 295 (460)
T ss_dssp ------------GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEE
T ss_pred ------------ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEE
Confidence 233 77999999999999999 4 99 9999985 88999999
Q ss_pred c--h------hhhccccE-----EEEEec-CCeEeecCCcccc
Q 019066 278 H--G------DLLSLTDR-----ARIRTY-LGELLGIPPAKQI 306 (346)
Q Consensus 278 H--~------~~~~~aDr-----i~v~l~-~G~iv~~g~~~~l 306 (346)
| + .+.++||| |+ +|+ +|+++ .|+++++
T Consensus 296 h~~~~~l~~~~~~~~~dr~~~~~vi-~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 296 CSETDPLWEKVKKTFGPELGNNNIF-FIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CCSSCTHHHHHHHHHHHHHCGGGEE-EECCCTTCC-CCCHHHH
T ss_pred ccCchhhhHHHHHHhcccccCCEEE-EEeCCCcEE-ECCHHHH
Confidence 9 5 55689999 96 498 99999 8887655
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-25 Score=234.35 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=78.6
Q ss_pred HHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc------------CccccCCCC-----
Q 019066 207 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF------------NCPYLSFRD----- 269 (346)
Q Consensus 207 ~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL------------DEPts~Ld~----- 269 (346)
.++.++++.++|... .+++++.+||||||||++|||+| ||||++||.
T Consensus 823 ~~~~~~L~~~gL~~~----------------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~ 886 (972)
T 2r6f_A 823 KRKLETLYDVGLGYM----------------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIAR 886 (972)
T ss_dssp HHHHHHHHHTTCSSS----------------BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCcc----------------cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHH
Confidence 345788999999762 24788999999999999999998 999999983
Q ss_pred -----------CceEEEEech-hhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHHH
Q 019066 270 -----------DKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 270 -----------g~tviiiTH~-~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
|.|||+|||+ .....||||++ | ++|+|++.|++++++..+. .++..++.
T Consensus 887 l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIiv-L~p~gG~~~G~Iv~~g~~~el~~~~~-~~t~~~l~ 953 (972)
T 2r6f_A 887 LLDVLHRLVDNGDTVLVIEHNLDVIKTADYIID-LGPEGGDRGGQIVAVGTPEEVAEVKE-SHTGRYLK 953 (972)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE-ECSSSTTSCCSEEEEESHHHHHTCTT-CHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE-EcCCCCCCCCEEEEecCHHHHHhCch-hHHHHHHH
Confidence 8999999992 33457999965 9 7999999999999987654 45555554
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-23 Score=202.03 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHhc-----------CccccCCCC---------------CceEEEEec-hhhhccccEEEEEe----cC
Q 019066 246 SDVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIRT----YL 294 (346)
Q Consensus 246 LSgGqrQRv~IArAL-----------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~l----~~ 294 (346)
||||||||++||++| ||||++||. |.|||+||| ..+...||++++ | ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~-l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK-VEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE-EEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE-EEEeccC
Confidence 699999999999988 999999983 799999999 455578999965 9 89
Q ss_pred CeEeec
Q 019066 295 GELLGI 300 (346)
Q Consensus 295 G~iv~~ 300 (346)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998875
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-25 Score=213.10 Aligned_cols=175 Identities=13% Similarity=0.057 Sum_probs=116.3
Q ss_pred hHHHHHHhhhhhhhhccC------CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 50 DAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
..++.++++.+++..... ..+|+++||+|.|+ .. + |+++||+|++|++++|+||||||||||+++|+
T Consensus 75 ~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~--~~--v---L~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 75 ALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF--IN--A---LKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp HSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--HH--H---HHHHHHTCTTCSEEEEECSSSSSHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--hh--h---hccceEEecCCCEEEEECCCCCcHHHHHHHHh
Confidence 345677776654432211 12589999999997 22 4 67799999999999999999999999999999
Q ss_pred hhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHh-hhhcchhhccCCCh
Q 019066 124 KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIME-GVRHGELVIRRSDS 202 (346)
Q Consensus 124 gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~-~i~~~~~~~~~~~~ 202 (346)
|++ +|+|.. +++|+...+ ..++.+ |+.+.... .
T Consensus 148 gl~--------~G~I~~----------------------~v~q~~~lf-----------~~ti~~~ni~~~~~~-----~ 181 (305)
T 2v9p_A 148 HFL--------GGSVLS----------------------FANHKSHFW-----------LASLADTRAALVDDA-----T 181 (305)
T ss_dssp HHH--------TCEEEC----------------------GGGTTSGGG-----------GGGGTTCSCEEEEEE-----C
T ss_pred hhc--------CceEEE----------------------EecCccccc-----------cccHHHHhhccCccc-----c
Confidence 998 388843 233333222 223333 44443210 1
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc--Ccc---ccCCCC--CceEEE
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF--NCP---YLSFRD--DKPVVV 275 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL--DEP---ts~Ld~--g~tvii 275 (346)
. .+.+.++.+ ++. | ++ +..|||||||| |||| +-| |++||. ...+..
T Consensus 182 ~----~~~~~i~~~-L~~-------g----------ld--g~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~~ 234 (305)
T 2v9p_A 182 H----ACWRYFDTY-LRN-------A----------LD--GYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYLY 234 (305)
T ss_dssp H----HHHHHHHHT-TTG-------G----------GG--TCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGGG
T ss_pred H----HHHHHHHHH-hHc-------c----------CC--ccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHHH
Confidence 1 334445543 333 2 23 67999999999 9998 555 999995 222334
Q ss_pred Eec-hhhhccccEEEEEecCCeEeecCCcccc
Q 019066 276 VTH-GDLLSLTDRARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 276 iTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l 306 (346)
+|| ..+...||+| + |++|++++.|+++++
T Consensus 235 ltH~~~~~~~aD~i-v-l~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 LHSRVQTFRFEQPC-T-DESGEQPFNITDADW 264 (305)
T ss_dssp GTTTEEEEECCCCC-C-CC---CCCCCCHHHH
T ss_pred HhCCHHHHHhCCEE-E-EeCCEEEEeCCHHHH
Confidence 589 3456789999 7 999999999999876
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=185.44 Aligned_cols=73 Identities=11% Similarity=-0.052 Sum_probs=54.5
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEE
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVV 276 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviii 276 (346)
++.|+++.++..+..+.++.+||+|||||++||||| ||||++||+ +.|+|++
T Consensus 199 l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~ 278 (322)
T 1e69_A 199 LDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI 278 (322)
T ss_dssp -----CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred ccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 344666666655566778899999999999999975 999999984 7899999
Q ss_pred ec-hhhhccccEE-EEEecCCeE
Q 019066 277 TH-GDLLSLTDRA-RIRTYLGEL 297 (346)
Q Consensus 277 TH-~~~~~~aDri-~v~l~~G~i 297 (346)
|| ..+..+||++ .++|.+|..
T Consensus 279 tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 279 THNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CCCTTGGGGCSEEEEEEESSSCE
T ss_pred ECCHHHHhhCceEEEEEEeCCEE
Confidence 99 5567789986 224777754
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.4e-21 Score=164.55 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=28.1
Q ss_pred eeeEEecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 94 LSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 94 ~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
||||+|++||+++|+||||||||||+|++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 499999999999999999999999999854
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=176.07 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=51.6
Q ss_pred cccCCCCCCHHHHHHHHHHHhc---------------CccccCCCC----------------CceEEEEec-hhhhcccc
Q 019066 239 LKSMEGDSDVEKQYNQIVATTF---------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTD 286 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArAL---------------DEPts~Ld~----------------g~tviiiTH-~~~~~~aD 286 (346)
+++++.+||||||||++||||| ||||++||+ |.|||+||| ......||
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFD 352 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCS
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCC
Confidence 3678999999999999998886 999999984 799999999 33467799
Q ss_pred EEEEEecCCeEee
Q 019066 287 RARIRTYLGELLG 299 (346)
Q Consensus 287 ri~v~l~~G~iv~ 299 (346)
++++ |++|++++
T Consensus 353 ~~~~-l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLR-ITGGVVVN 364 (365)
T ss_dssp CEEE-EETTEEC-
T ss_pred EEEE-EECCEEEe
Confidence 9964 99999975
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-22 Score=199.20 Aligned_cols=187 Identities=11% Similarity=0.023 Sum_probs=122.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce---e
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---V 144 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~---~ 144 (346)
.++++++++++.|+.+.. + |+++ |+|.+||+++|+||||||||||+++|+|+.+ |+.|.|.++|+ +
T Consensus 129 ~~~l~~~~v~~~~~tg~~--v---ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~e 197 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVR--A---INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGRE 197 (438)
T ss_dssp CCTTTSCCCCSBCCCSCH--H---HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHH
T ss_pred CCceEEeccceecCCCce--E---Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecHH
Confidence 357999999999974333 5 6669 9999999999999999999999999999999 99999999997 4
Q ss_pred CCCcccc-cccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccc
Q 019066 145 GDGTYFL-QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 223 (346)
Q Consensus 145 i~~~~~~-~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 223 (346)
+...... ......++.+++++|+.. ..+...++.+|+.+... ....-+ ..+
T Consensus 198 v~~~~~~~~~~~~l~r~i~~v~q~~~---------~~~~~~~v~~~~~~~ae----------------~~~~~~--~~v- 249 (438)
T 2dpy_A 198 VKDFIENILGPDGRARSVVIAAPADV---------SPLLRMQGAAYATRIAE----------------DFRDRG--QHV- 249 (438)
T ss_dssp HHHHHHTTTHHHHHHTEEEEEECTTS---------CHHHHHHHHHHHHHHHH----------------HHHTTT--CEE-
T ss_pred HHHHHHhhccccccCceEEEEECCCC---------CHHHHHHHHHHHHHHHH----------------HHHhCC--CCH-
Confidence 4200000 000001223344444211 11122245444432111 111101 111
Q ss_pred cccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhcCcc--ccCCCC--------------------Cc-----eEEEE
Q 019066 224 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP--YLSFRD--------------------DK-----PVVVV 276 (346)
Q Consensus 224 ~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArALDEP--ts~Ld~--------------------g~-----tviii 276 (346)
..+++ ....||+|| ||++|| +.|| |++||+ |. |++++
T Consensus 250 ------~~~ld-------~l~~lS~g~-qrvslA--l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~ 313 (438)
T 2dpy_A 250 ------LLIMD-------SLTRYAMAQ-REIALA--IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTE 313 (438)
T ss_dssp ------EEEEE-------CHHHHHHHH-HHHHHH--TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECS
T ss_pred ------HHHHH-------hHHHHHHHH-HHHHHH--hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEe
Confidence 11111 145799999 999999 7566 788763 32 89999
Q ss_pred echhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 277 THGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 277 TH~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
||+.-..+||+++ +|.+|+|+.++++.++...|
T Consensus 314 tHdl~~~iad~v~-~l~dG~Ivl~~~~~~~~~~P 346 (438)
T 2dpy_A 314 GDDQQDPIADSAR-AILDGHIVLSRRLAEAGHYP 346 (438)
T ss_dssp SSCSCCHHHHHHH-HHSSEEEEECHHHHHTTCSS
T ss_pred CCCccchhhceEE-EEeCcEEEEeCCHHHccCCC
Confidence 9954377899996 49999999999988887654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-21 Score=180.94 Aligned_cols=159 Identities=12% Similarity=0.104 Sum_probs=105.1
Q ss_pred eeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccc-ccc-CCCCccceeecccc
Q 019066 93 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE-YTI-PRGSNSFSLYDTRS 170 (346)
Q Consensus 93 ~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~-~~~-~r~~i~~~~~d~~~ 170 (346)
+.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.|+......+. ..+ .+..+++++|+...
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~ 165 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 165 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--C
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCc
Confidence 34899999999999999999999999999999999 999999999988742100000 001 01234455444320
Q ss_pred cccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHH
Q 019066 171 LSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 249 (346)
Q Consensus 171 ~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgG 249 (346)
+.+. ++.+++.++... ... ..+++.+|+.+ ..++++.+||
T Consensus 166 ----------~~~~~~v~e~l~~~~~~--~~d--------~~lldt~gl~~-----------------~~~~~~~eLS-- 206 (302)
T 3b9q_A 166 ----------AKAATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI-- 206 (302)
T ss_dssp ----------CCHHHHHHHHHHHHHHT--TCS--------EEEECCCCCSS-----------------CCHHHHHHHH--
T ss_pred ----------cCHHHHHHHHHHHHHHc--CCc--------chHHhcCCCCc-----------------chhHHHHHHH--
Confidence 2222 455555432210 000 12344455544 3456677899
Q ss_pred HHHHHHHHHhc-----------CccccCCCC-----------CceEEEEec-hh----------hhccccEEEEEecCCe
Q 019066 250 KQYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-GD----------LLSLTDRARIRTYLGE 296 (346)
Q Consensus 250 qrQRv~IArAL-----------DEPts~Ld~-----------g~tviiiTH-~~----------~~~~aDri~v~l~~G~ 296 (346)
+||++||||| | ||+++|. |.|+|++|| +. +..+++.|. ++..|+
T Consensus 207 -kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~-~i~~Ge 283 (302)
T 3b9q_A 207 -ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVGE 283 (302)
T ss_dssp -HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEE-EEECSS
T ss_pred -HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEE-EEeCCC
Confidence 9999999998 8 9999884 899999999 32 334566775 488886
Q ss_pred Ee
Q 019066 297 LL 298 (346)
Q Consensus 297 iv 298 (346)
.+
T Consensus 284 ~~ 285 (302)
T 3b9q_A 284 AV 285 (302)
T ss_dssp SG
T ss_pred Ch
Confidence 54
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-21 Score=189.54 Aligned_cols=139 Identities=13% Similarity=0.060 Sum_probs=101.1
Q ss_pred ceeeeEEecCCc--------------------EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 92 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 92 L~~isl~i~~Ge--------------------~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
|++|||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.++.
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC---------
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeecc-----
Confidence 666999999999 999999999999999999999999 99999999987653
Q ss_pred cccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
+ .++++++. .+..+ +.+++.+. .. +.++.++++.+++.+.
T Consensus 109 ------~--~~~v~q~~-~~~~ltv~D~~g~~-----------~~----------~~~~~~~L~~~~L~~~--------- 149 (413)
T 1tq4_A 109 ------M--ERHPYKHP-NIPNVVFWDLPGIG-----------ST----------NFPPDTYLEKMKFYEY--------- 149 (413)
T ss_dssp ------C--CCEEEECS-SCTTEEEEECCCGG-----------GS----------SCCHHHHHHHTTGGGC---------
T ss_pred ------e--eEEecccc-ccCCeeehHhhccc-----------ch----------HHHHHHHHHHcCCCcc---------
Confidence 1 14566653 22233 44444321 10 1246678888888651
Q ss_pred eeechhhhcccCCCCCCHH--HHHHHHHHHhc-------------------CccccCCCC--------------------
Q 019066 231 FVVDGLAVLKSMEGDSDVE--KQYNQIVATTF-------------------NCPYLSFRD-------------------- 269 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgG--qrQRv~IArAL-------------------DEPts~Ld~-------------------- 269 (346)
+..+. ||+| |+||++||+|| ||||++||+
T Consensus 150 ---------~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 150 ---------DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp ---------SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 22233 9999 99999999998 999999874
Q ss_pred -C----ceEEEEec--h--hhhccccEEE
Q 019066 270 -D----KPVVVVTH--G--DLLSLTDRAR 289 (346)
Q Consensus 270 -g----~tviiiTH--~--~~~~~aDri~ 289 (346)
| .+++++|| . .+..+||++.
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 1 35778898 3 3788888883
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-21 Score=171.07 Aligned_cols=60 Identities=18% Similarity=0.105 Sum_probs=43.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
|++| ++||+++|+||||||||||+++|+|+ + |++|+|. +.++. . .....++.++|++|+.
T Consensus 16 l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~--~~~~~---~--~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 16 VDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVS--RIILT---R--PAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCS--EEEEE---E--CSCCTTCCCCSSCC--
T ss_pred HHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeee--eEEec---C--CchhhhcceEEecCCH
Confidence 5555 89999999999999999999999999 9 9999994 22221 0 0011244567777765
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-21 Score=173.35 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=33.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++.
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~~~ 58 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVSCT 58 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCCEE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eeccc
Confidence 77799999999999999999999999999999977 5 88998 76653
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-21 Score=184.15 Aligned_cols=190 Identities=10% Similarity=-0.008 Sum_probs=116.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
.++++++++++.|+.+. .+ |+++ |+|.+||+++|+||||||||||+++|+|+.+ |+.|.|.+.|++..
T Consensus 43 ~~~i~~~~l~~~~~tg~--~a---ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~~~- 110 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGV--RA---IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGERGR- 110 (347)
T ss_dssp SCSTTCCCCCSEECCSC--HH---HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHH-
T ss_pred CCCeeecccceecCCCC--EE---EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEecccHH-
Confidence 35799999999997443 25 5669 9999999999999999999999999999999 99999999886521
Q ss_pred cccccccccCCCCccceeecc--cccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDT--RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~--~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
+.. ..+++ +... .....++++... +. ..++..++..+.+.....+
T Consensus 111 -----ev~---~~i~~-~~~~~~~~~v~~~~~~~~--------------------~~---~~r~~~~~~~~~~ae~~~~- 157 (347)
T 2obl_A 111 -----EVN---EFLAL-LPQSTLSKCVLVVTTSDR--------------------PA---LERMKAAFTATTIAEYFRD- 157 (347)
T ss_dssp -----HHH---HHHTT-SCHHHHTTEEEEEECTTS--------------------CH---HHHHHHHHHHHHHHHHHHT-
T ss_pred -----HHH---HHHHh-hhhhhhhceEEEEECCCC--------------------CH---HHHHHHHHHHHHHHHHHHh-
Confidence 000 00001 0000 000001111100 00 0011111111111000000
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhcCcc-ccCCCC------------------Cc-----eEEEEechhh
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCP-YLSFRD------------------DK-----PVVVVTHGDL 281 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArALDEP-ts~Ld~------------------g~-----tviiiTH~~~ 281 (346)
.|.+..+ +-+.+..||+|| ||+++| +-+.| |+|||+ |. ||+++||+.-
T Consensus 158 -~~~~vl~-----~ld~~~~lS~g~-r~v~la-l~~p~~t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~ 229 (347)
T 2obl_A 158 -QGKNVLL-----MMDSVTRYARAA-RDVGLA-SGEPDVRGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN 229 (347)
T ss_dssp -TTCEEEE-----EEETHHHHHHHH-HHHHHH-TTCCCCBTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC
T ss_pred -ccccHHH-----HHhhHHHHHHHH-HHHHHH-cCCCCcccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC
Confidence 0000000 113466899999 899999 33666 578652 55 8999999544
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCC
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~ 311 (346)
..+||++.+ +.+|+|+.+++..++...|.
T Consensus 230 ~~i~d~v~~-i~dG~Ivl~~~l~~~~~~Pa 258 (347)
T 2obl_A 230 DPIGDEVRS-ILDGHIVLTRELAEENHFPA 258 (347)
T ss_dssp CHHHHHHHH-HCSEEEEBCHHHHTTTCSSC
T ss_pred ChhhhheEE-eeCcEEEEeCCHHHcCCCCC
Confidence 778999965 99999999999888765553
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-20 Score=174.61 Aligned_cols=127 Identities=14% Similarity=0.092 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccc-hhhchHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMI 182 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~ 182 (346)
.++|+||||||||||+|+|+|++. |++|+|.++|+++.. ...++.+++++|+...+..+ |.+++.+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i~~-------~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKIPK-------TVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCC-------CCSCCEEEESCC----CCEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcccCc-------ceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 589999999999999999999999 999999999987641 12234567888876655554 56665432
Q ss_pred HHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc--
Q 019066 183 KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-- 260 (346)
Q Consensus 183 ~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-- 260 (346)
..... ....+.+.+.+. .. +.+.++.+|||||+||++||||+
T Consensus 72 -----------~~~~~----~~~~~~i~~~~~----~~-----------------~~~~~~~~LS~G~~qrv~iaRal~~ 115 (270)
T 3sop_A 72 -----------DQINN----ENCWEPIEKYIN----EQ-----------------YEKFLKEEVNIARKKRIPDTRVHCC 115 (270)
T ss_dssp -----------CCSBC----TTCSHHHHHHHH----HH-----------------HHHHHHHHSCTTCCSSCCCCSCCEE
T ss_pred -----------hhccc----HHHHHHHHHHHH----HH-----------------HHhhhHHhcCcccchhhhhheeeee
Confidence 11111 111122222222 11 23555779999999999999998
Q ss_pred ----CccccCCCC-----------CceEEEEec
Q 019066 261 ----NCPYLSFRD-----------DKPVVVVTH 278 (346)
Q Consensus 261 ----DEPts~Ld~-----------g~tviiiTH 278 (346)
|||+.+|++ ..++|+|.|
T Consensus 116 lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~ 148 (270)
T 3sop_A 116 LYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIA 148 (270)
T ss_dssp EEEECCCSSSCCHHHHHHHHHHHTTSEEEEEET
T ss_pred eEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEe
Confidence 999999863 577777777
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-20 Score=164.30 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.| .+|++||+++|+||||||||||+|+|+|+++
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 666 7999999999999999999999999999985
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-21 Score=195.62 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=53.1
Q ss_pred CcEEEeeeEEEeCCCCceecccCceeeeE-EecCCcEEEEEcCCCCCHHHHHHH--HhhhccCCCCCCCCceEEECceeC
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~~isl-~i~~Ge~iaIvGpnGsGKSTLl~~--L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
++++.+++.+.+++ .. + |++||| .|++|++++|+||||||||||+++ ++|+++ |++|.|+++|.+.
T Consensus 11 ~~~~~~~~~~~~~g-~~--~---Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 11 NNSEHQAIAKMRTM-IE--G---FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEET 79 (525)
T ss_dssp ---CCSSCCEECCC-CT--T---HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSC
T ss_pred CCccccccccccCC-ch--h---HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeCC
Confidence 34666777654433 22 5 666999 999999999999999999999999 789999 8999999999773
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-20 Score=179.64 Aligned_cols=158 Identities=11% Similarity=0.107 Sum_probs=104.7
Q ss_pred eeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccccccc-cc-CCCCccceeeccc-c
Q 019066 94 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEY-TI-PRGSNSFSLYDTR-S 170 (346)
Q Consensus 94 ~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~-~~-~r~~i~~~~~d~~-~ 170 (346)
.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.|+......+.. .+ .+..+++++|+.. .
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~ 223 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 223 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccccc
Confidence 4899999999999999999999999999999999 9999999999887421000000 01 1223455555432 2
Q ss_pred cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 171 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 171 ~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
+ ...++.+++.++... ..+ ..+++.+|+.+ ..++++.+||
T Consensus 224 ~----------p~~tv~e~l~~~~~~--~~d--------~~lldt~Gl~~-----------------~~~~~~~eLS--- 263 (359)
T 2og2_A 224 K----------AATVLSKAVKRGKEE--GYD--------VVLCDTSGRLH-----------------TNYSLMEELI--- 263 (359)
T ss_dssp C----------HHHHHHHHHHHHHHT--TCS--------EEEEECCCCSS-----------------CCHHHHHHHH---
T ss_pred C----------hhhhHHHHHHHHHhC--CCH--------HHHHHhcCCCh-----------------hhhhHHHHHH---
Confidence 2 122455555432210 000 01234445544 3456677899
Q ss_pred HHHHHHHHhc-----------CccccCCCC-----------CceEEEEec-hh----------hhccccEEEEEecCCeE
Q 019066 251 QYNQIVATTF-----------NCPYLSFRD-----------DKPVVVVTH-GD----------LLSLTDRARIRTYLGEL 297 (346)
Q Consensus 251 rQRv~IArAL-----------DEPts~Ld~-----------g~tviiiTH-~~----------~~~~aDri~v~l~~G~i 297 (346)
+||++||||| | ||+++|. +.|+|++|| +. +..+++.|. ++..|+.
T Consensus 264 kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~-~ig~Ge~ 341 (359)
T 2og2_A 264 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVK-FIGVGEA 341 (359)
T ss_dssp HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEE-EEECSSS
T ss_pred HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEE-EEeCCCC
Confidence 9999999998 8 9999884 899999999 32 334567785 4777764
Q ss_pred e
Q 019066 298 L 298 (346)
Q Consensus 298 v 298 (346)
+
T Consensus 342 ~ 342 (359)
T 2og2_A 342 V 342 (359)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-20 Score=177.84 Aligned_cols=172 Identities=10% Similarity=-0.083 Sum_probs=113.3
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEE-----------------------ecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYD-----------------------VPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~-----------------------i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
...|++++|++.|.. + +++++|. +++|+++||+||||||||||+++|+|
T Consensus 41 ~~~i~~~~v~~~y~p-----~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 41 GEQIDLLEVEEVYLP-----L---ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp TCCCCHHHHHHTHHH-----H---HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeehhhhhhh-----H---HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 346999999999942 2 3445553 89999999999999999999999999
Q ss_pred hccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHH
Q 019066 125 VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS 204 (346)
Q Consensus 125 l~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~ 204 (346)
+++ |+.|. +.+++++|+...+. .++.+|+.+... ...+...
T Consensus 113 ll~-----~~~G~---------------------~~v~~v~qd~~~~~-----------~t~~e~~~~~~~--~g~~~~~ 153 (312)
T 3aez_A 113 LLA-----RWDHH---------------------PRVDLVTTDGFLYP-----------NAELQRRNLMHR--KGFPESY 153 (312)
T ss_dssp HHH-----TSTTC---------------------CCEEEEEGGGGBCC-----------HHHHHHTTCTTC--TTSGGGB
T ss_pred hcc-----ccCCC---------------------CeEEEEecCccCCc-----------ccHHHHHHHHHh--cCCChHH
Confidence 999 86553 12356666654332 234444433110 0111222
Q ss_pred HHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCC---C---
Q 019066 205 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFR---D--- 269 (346)
Q Consensus 205 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld---~--- 269 (346)
..+.+.++++.++ .. ..+.++.+|||||+||+++|||+ |||++.+| .
T Consensus 154 d~~~~~~~L~~l~-~~-----------------~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~ 215 (312)
T 3aez_A 154 NRRALMRFVTSVK-SG-----------------SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVS 215 (312)
T ss_dssp CHHHHHHHHHHHH-TT-----------------CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGG
T ss_pred HHHHHHHHHHHhC-CC-----------------cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHH
Confidence 3456777788877 33 22455679999999999999998 99999975 1
Q ss_pred ---CceEEEEec--h-hhhccccEEEEEecCCeEeecCCccccccC
Q 019066 270 ---DKPVVVVTH--G-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 270 ---g~tviiiTH--~-~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+.+ |+|+| + ...++++|.. .+.+++ ..+++.++.+
T Consensus 216 ~~~D~~-I~V~a~~~~~~~R~i~R~~-~~rd~~---~r~~~~~~~~ 256 (312)
T 3aez_A 216 DLFDFS-LYVDARIEDIEQWYVSRFL-AMRTTA---FADPESHFHH 256 (312)
T ss_dssp GGCSEE-EEEEECHHHHHHHHHHHHH-HHTTTG---GGSTTSTTGG
T ss_pred HhcCcE-EEEECCHHHHHHHHHHHHH-HHHhcc---ccCcchhhhc
Confidence 444 55566 3 2456677773 366655 2345555543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-18 Score=150.84 Aligned_cols=49 Identities=8% Similarity=-0.051 Sum_probs=40.8
Q ss_pred cccCCCCCCHHHHHHHHHHHh-----c---------Cc--cccCCCC-------------CceEEEEec-----hhhhcc
Q 019066 239 LKSMEGDSDVEKQYNQIVATT-----F---------NC--PYLSFRD-------------DKPVVVVTH-----GDLLSL 284 (346)
Q Consensus 239 ~~~~~~~LSgGqrQRv~IArA-----L---------DE--Pts~Ld~-------------g~tviiiTH-----~~~~~~ 284 (346)
.++++.+||||||||++|||| | || ||++||+ +.|+|++|| +.+..+
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHH
Confidence 467788999999999999996 6 99 9999873 677999996 356677
Q ss_pred ccE
Q 019066 285 TDR 287 (346)
Q Consensus 285 aDr 287 (346)
|+|
T Consensus 150 ~~r 152 (178)
T 1ye8_A 150 RRL 152 (178)
T ss_dssp HTC
T ss_pred Hhc
Confidence 776
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-18 Score=164.59 Aligned_cols=48 Identities=15% Similarity=0.325 Sum_probs=45.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|.+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~~ 208 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESSC
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCee
Confidence 666999999999999999999999999999999999 999999998754
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=150.28 Aligned_cols=63 Identities=8% Similarity=-0.052 Sum_probs=54.9
Q ss_pred ccCCC-CCCHHHHHHHHHHHhc------------------CccccCCCC-------------CceEEEEec-hhhhcccc
Q 019066 240 KSMEG-DSDVEKQYNQIVATTF------------------NCPYLSFRD-------------DKPVVVVTH-GDLLSLTD 286 (346)
Q Consensus 240 ~~~~~-~LSgGqrQRv~IArAL------------------DEPts~Ld~-------------g~tviiiTH-~~~~~~aD 286 (346)
++++. .||||||||++||++| ||||++||+ +.|+|++|| +. .||
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~~~---~~~ 335 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTELAP---GAA 335 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSCCT---TCS
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEeccc---cCC
Confidence 34566 7999999999999998 999999994 578999999 33 899
Q ss_pred EEEEEecCCeEeecCCcccc
Q 019066 287 RARIRTYLGELLGIPPAKQI 306 (346)
Q Consensus 287 ri~v~l~~G~iv~~g~~~~l 306 (346)
+++ +|++|+++..|+++++
T Consensus 336 ~i~-~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTL-RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEE-EEETTEEEECCCTTTS
T ss_pred EEE-EEECCEEEecCCHHHH
Confidence 996 4999999999999877
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-16 Score=161.12 Aligned_cols=143 Identities=13% Similarity=0.159 Sum_probs=95.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceee-eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCce--EEECceeCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ--VTYNSSVGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~i-sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~--I~~~g~~i~ 146 (346)
.+++++++..|++ |+.+ +..|++|++++|+||||||||||+++++|+.. +. |. +++.
T Consensus 257 ~~~~~~l~~g~~~---------ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-----~~-G~~vi~~~----- 316 (525)
T 1tf7_A 257 RSSNVRVSSGVVR---------LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC-----AN-KERAILFA----- 316 (525)
T ss_dssp CCCCCEECCSCHH---------HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-----TT-TCCEEEEE-----
T ss_pred ccccceeecChHH---------HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----hC-CCCEEEEE-----
Confidence 4566777655432 2222 55899999999999999999999999999998 64 53 2322
Q ss_pred CcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 147 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 147 ~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
+++... .+.... .. ++ .+ +.+ +...|+..
T Consensus 317 ------------------~ee~~~---------~l~~~~--~~--~g------~~-------~~~-~~~~g~~~------ 345 (525)
T 1tf7_A 317 ------------------YEESRA---------QLLRNA--YS--WG------MD-------FEE-MERQNLLK------ 345 (525)
T ss_dssp ------------------SSSCHH---------HHHHHH--HT--TS------CC-------HHH-HHHTTSEE------
T ss_pred ------------------EeCCHH---------HHHHHH--HH--cC------CC-------HHH-HHhCCCEE------
Confidence 222100 000000 00 00 01 011 22344433
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------------CceEEEE
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------------DKPVVVV 276 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------------g~tviii 276 (346)
+.+.++.+|||||+||+++|+++ | ||++||. |+|+|++
T Consensus 346 -----------~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilv 413 (525)
T 1tf7_A 346 -----------IVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFT 413 (525)
T ss_dssp -----------ECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -----------EEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34677889999999999999998 9 9999763 8999999
Q ss_pred echh------------hhccccEEEEEecCCe
Q 019066 277 THGD------------LLSLTDRARIRTYLGE 296 (346)
Q Consensus 277 TH~~------------~~~~aDri~v~l~~G~ 296 (346)
||+. +..+||+|++ |++|+
T Consensus 414 sh~~~~~~~~~~~~~~l~~~~D~vi~-L~~ge 444 (525)
T 1tf7_A 414 NTSDQFMGAHSITDSHISTITDTIIL-LQYVE 444 (525)
T ss_dssp EECSSSSCCCSSCSSCCTTTCSEEEE-EEEEE
T ss_pred ECcccccCcccccCcccceeeeEEEE-EEEEE
Confidence 9943 4578999964 98887
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-16 Score=147.30 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=42.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEEECce
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSS 143 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~~~g~ 143 (346)
|+++++.|++|++++|+||||||||||++.|++... +++| .|.+.+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~~ 72 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAML 72 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEES
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEeC
Confidence 777999999999999999999999999999999998 8878 7766543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-16 Score=166.41 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=77.8
Q ss_pred HHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC-------
Q 019066 208 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD------- 269 (346)
Q Consensus 208 ~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~------- 269 (346)
+..++|..+||... .+++++.+|||||+||++||||| ||||++||+
T Consensus 443 ~~~~~L~~vgL~~l----------------~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~ 506 (916)
T 3pih_A 443 KRLEFLVDVGLEYL----------------TLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLI 506 (916)
T ss_dssp HHHHHHHTTTCTTC----------------BTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHH
T ss_pred HHHHHHHHcCCccc----------------cccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHH
Confidence 44567888999752 25888999999999999999999 999999984
Q ss_pred ---------CceEEEEec-hhhhccccEEEEEe------cCCeEeecCCccccccCCCCCChHHHH
Q 019066 270 ---------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 270 ---------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
|.|||+||| ..+...||+|++ | ++|+++..|++++++..+....+..++
T Consensus 507 ~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~-lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~l 571 (916)
T 3pih_A 507 KTLKKLRDLGNTVIVVEHDEEVIRNADHIID-IGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYL 571 (916)
T ss_dssp HHHHHTTTTTCEEEEECCCHHHHHTCSEEEE-EESSSGGGCSEEEEEECHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE-EcCCcccCCCEEEEeechhhhhcCchhcchhhhh
Confidence 899999999 333445999964 9 999999999999999887655544443
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-16 Score=168.48 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=90.5
Q ss_pred CcEEEee-----eEEEeCCCCceecccCceeeeEEecC-------CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc
Q 019066 69 SLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 136 (346)
Q Consensus 69 ~~l~~~~-----l~~~y~~~~~~~~l~~L~~isl~i~~-------Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G 136 (346)
++|+++| |++.|.++.. + ++|++|++++ |++++|+||||||||||+|+| |++. +-
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~--v---~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-----~~-- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDF--I---PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-----VM-- 815 (1022)
T ss_dssp CCEEEEEECCCC------CCCC--C---CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-----HH--
T ss_pred ceEEEEeccccEEEEEecCCce--E---eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-----HH--
Confidence 4799999 9999944333 3 7789999987 999999999999999999999 9987 41
Q ss_pred eEEECceeCCCcccccccccCCCCcc-ceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHH
Q 019066 137 QVTYNSSVGDGTYFLQEYTIPRGSNS-FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 215 (346)
Q Consensus 137 ~I~~~g~~i~~~~~~~~~~~~r~~i~-~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (346)
. +++ |++++...+ .+.+++ .. .
T Consensus 816 ---------a-------------qiG~~Vpq~~~~l--~v~d~I-----------~~----------------------r 838 (1022)
T 2o8b_B 816 ---------A-------------QMGCYVPAEVCRL--TPIDRV-----------FT----------------------R 838 (1022)
T ss_dssp ---------H-------------TTTCCEESSEEEE--CCCSBE-----------EE----------------------E
T ss_pred ---------h-------------heeEEeccCcCCC--CHHHHH-----------HH----------------------H
Confidence 0 113 666654211 122222 10 1
Q ss_pred cCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------
Q 019066 216 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------- 269 (346)
Q Consensus 216 ~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------- 269 (346)
+|+.+. ..+..+++|+++++ +++|+++ |||++|+|.
T Consensus 839 ig~~d~-----------------~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~ 900 (1022)
T 2o8b_B 839 LGASDR-----------------IMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET 900 (1022)
T ss_dssp CC--------------------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHH-----------------HhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc
Confidence 122221 12223467777665 8888887 999999762
Q ss_pred -CceEEEEec--hhhhccccEEEEEecCCeEe--ecCCc
Q 019066 270 -DKPVVVVTH--GDLLSLTDRARIRTYLGELL--GIPPA 303 (346)
Q Consensus 270 -g~tviiiTH--~~~~~~aDri~v~l~~G~iv--~~g~~ 303 (346)
|.++|++|| +.+..+||++.+ + +|++. ..|.+
T Consensus 901 ~g~~vl~~TH~~el~~~~~d~~~v-~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 901 IKCRTLFSTHYHSLVEDYSQNVAV-R-LGHMACMVENEC 937 (1022)
T ss_dssp SCCEEEEECCCHHHHHHTSSCSSE-E-EEEEEEC-----
T ss_pred CCCEEEEEeCCHHHHHHhCCccee-e-cCeEEEEEecCc
Confidence 789999999 567778999954 4 58877 44443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-17 Score=158.39 Aligned_cols=144 Identities=11% Similarity=0.098 Sum_probs=64.9
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh-ccCCCCCCCCceEEECceeCCCccccc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSSVGDGTYFLQ 152 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl-~~~~~~~p~~G~I~~~g~~i~~~~~~~ 152 (346)
+||++.|++.. + +++++|+| +|+||||||||||+++|.|. .. |++| |.++|.++..
T Consensus 2 ~~l~~~~~~~~---~---l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~~~~----- 58 (301)
T 2qnr_A 2 SNLPNQVHRKS---V---KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEKIER----- 58 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECCEE---E---EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcccCC-----
Confidence 47899997643 4 66699998 99999999999999999997 66 8889 8888876541
Q ss_pred ccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeee
Q 019066 153 EYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIF 231 (346)
Q Consensus 153 ~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 231 (346)
....+.++++++.......+ +.+++.+.... .+ ....+..+..+. +
T Consensus 59 --t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~--~~------------~e~~~~l~~~l~------~----------- 105 (301)
T 2qnr_A 59 --TVQIEASTVEIEERGVKLRLTVVDTPGYGDAI--NC------------RDCFKTIISYID------E----------- 105 (301)
T ss_dssp --------CEEEEC---CCEEEEEEEEC-------------------------CTTHHHHHH------H-----------
T ss_pred --cceEeeEEEEecCCCcccCcchhhhhhhhhhc--Cc------------HHHHHHHHHHHH------H-----------
Confidence 11122345666654433344 55555432110 00 000000111111 1
Q ss_pred eechhhhcccCCCCCCHHHHHHHHHHHhc-----CccccC-CCC-------------CceEEEEech
Q 019066 232 VVDGLAVLKSMEGDSDVEKQYNQIVATTF-----NCPYLS-FRD-------------DKPVVVVTHG 279 (346)
Q Consensus 232 ~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----DEPts~-Ld~-------------g~tviiiTH~ 279 (346)
..+++..++|||||||+.+|||+ ||||++ ||+ +.++|+.+|+
T Consensus 106 ------~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~D 166 (301)
T 2qnr_A 106 ------QFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKAD 166 (301)
T ss_dssp ------HHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGG
T ss_pred ------HHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 23456779999999999999976 999985 763 5677777884
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.57 E-value=7.9e-14 Score=133.66 Aligned_cols=55 Identities=11% Similarity=0.015 Sum_probs=45.4
Q ss_pred hcccCCCCCCHHHHH------HHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhhccc
Q 019066 238 VLKSMEGDSDVEKQY------NQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLT 285 (346)
Q Consensus 238 ~~~~~~~~LSgGqrQ------Rv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~~~a 285 (346)
..++++.+||||||| |+++|+|| ||||++||+ +.|+|+||| ..+...|
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~ 320 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAA 320 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGC
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhC
Confidence 457889999999999 55666666 999999984 679999999 5677889
Q ss_pred cEEEEEec
Q 019066 286 DRARIRTY 293 (346)
Q Consensus 286 Dri~v~l~ 293 (346)
|++++ |.
T Consensus 321 d~~~~-l~ 327 (339)
T 3qkt_A 321 DHVIR-IS 327 (339)
T ss_dssp SEEEE-EE
T ss_pred CEEEE-EE
Confidence 99964 64
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-17 Score=159.78 Aligned_cols=182 Identities=10% Similarity=0.024 Sum_probs=103.1
Q ss_pred ceeeeEEecC--CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC----ceEEECc----eeCCCcccccccccCCCCc
Q 019066 92 MTLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYNS----SVGDGTYFLQEYTIPRGSN 161 (346)
Q Consensus 92 L~~isl~i~~--Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~----G~I~~~g----~~i~~~~~~~~~~~~r~~i 161 (346)
.+.|+++|.+ |+.++|+||||||||||+++|+|+++ |++ |+|++++ .++.
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~~~~~--------------- 217 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGGDEQA--------------- 217 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSSCTTS---------------
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCCCccc---------------
Confidence 3459999999 99999999999999999999999999 888 8887643 2211
Q ss_pred cceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce--eeeee-chhhh
Q 019066 162 SFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF--VIFVV-DGLAV 238 (346)
Q Consensus 162 ~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~~~v-~e~~~ 238 (346)
+...+. ..+.+++|+..++..++.+|+.+... ......+...+........+...+.+ ++.++ ||...
T Consensus 218 -~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~ 288 (365)
T 1lw7_A 218 -MQYSDY-PQMALGHQRYIDYAVRHSHKIAFIDT-------DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT 288 (365)
T ss_dssp -SCTTTH-HHHHHHHHHHHHHHHHHCSSEEEESS-------CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCC
T ss_pred -CChhHH-HHHHHHHHHHHHHHHhccCCEEEEeC-------CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence 111111 11334566665555677777765321 11111222222222222222222221 33322 54210
Q ss_pred -cccCCCCCCHHHHHHHHHHHhcCccccCCCCCceEEEEec-hhhhccccEEEEEecCCeEeecCCccccc
Q 019066 239 -LKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 307 (346)
Q Consensus 239 -~~~~~~~LSgGqrQRv~IArALDEPts~Ld~g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~l~ 307 (346)
.......+|+||+||.+|+|+|.+-.. ..+.++|+++| ....++++++.+ +++ ++..++++++.
T Consensus 289 p~~~~g~~~sld~~~r~~l~~~l~~l~~--~~~~~ililde~~~~~r~~~~i~~-i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 289 EWVDDGLRSLGSQKQRQQFQQLLKKLLD--KYKVPYIEIESPSYLDRYNQVKAV-IEK--VLNEEEISELQ 354 (365)
T ss_dssp C-----------CCSHHHHHHHHHHHHH--GGGCCCEEEECSSHHHHHHHHHHH-HHH--HTSCCCCSSCC
T ss_pred CcccCCCcCCccHHHHHHHHHHHHHHHH--HcCCCEEEeCCCCHHHHHHHHHHH-HHH--HhcccchhHhh
Confidence 001123689999999999999832211 01567999999 677788888854 643 56666666653
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-15 Score=151.37 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=46.7
Q ss_pred ccCCCCC-CHHHHHHHHHHHhc-----------CccccCCCC---------------CceEEEEec-hhhhccccEEEEE
Q 019066 240 KSMEGDS-DVEKQYNQIVATTF-----------NCPYLSFRD---------------DKPVVVVTH-GDLLSLTDRARIR 291 (346)
Q Consensus 240 ~~~~~~L-SgGqrQRv~IArAL-----------DEPts~Ld~---------------g~tviiiTH-~~~~~~aDri~v~ 291 (346)
.+++..| ||||+||++||||| ||||++||. |.|||+||| ..+...||++++
T Consensus 391 ~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~- 469 (517)
T 4ad8_A 391 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK- 469 (517)
T ss_dssp CCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEE-
T ss_pred cccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE-
Confidence 4667788 99999999999998 999999985 889999999 344456999965
Q ss_pred ecCCe
Q 019066 292 TYLGE 296 (346)
Q Consensus 292 l~~G~ 296 (346)
|+++.
T Consensus 470 ~~~~~ 474 (517)
T 4ad8_A 470 VEKQV 474 (517)
T ss_dssp EECCE
T ss_pred Eeccc
Confidence 86553
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-16 Score=144.12 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=50.8
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-CceEEECceeCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-~G~I~~~g~~i~ 146 (346)
++++++|++. . + |+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.++.
T Consensus 5 ~~~l~~l~~~----~---v---l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 5 IPEFKKLGLP----D---K---VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIE 65 (261)
T ss_dssp -CCGGGSSCC----T---H---HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEESSCC
T ss_pred CCChHHCCCH----H---H---HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCCcce
Confidence 4677777753 1 3 66798 89999999999999999999999999999 88 999999987763
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-16 Score=150.73 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.|+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCC
Confidence 799999999999999999999999999 99999999999875
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-15 Score=163.36 Aligned_cols=62 Identities=8% Similarity=-0.032 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHhc-----------CccccCCCC------------------CceEEEEec-hhhhccccEEEEEecC
Q 019066 245 DSDVEKQYNQIVATTF-----------NCPYLSFRD------------------DKPVVVVTH-GDLLSLTDRARIRTYL 294 (346)
Q Consensus 245 ~LSgGqrQRv~IArAL-----------DEPts~Ld~------------------g~tviiiTH-~~~~~~aDri~v~l~~ 294 (346)
.+|+++.++..+|+++ |||++|+|. |.++|++|| ..+..+||++.. +.+
T Consensus 721 ~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~-v~n 799 (934)
T 3thx_A 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT-VNN 799 (934)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTT-EEE
T ss_pred hHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccce-eEe
Confidence 4555555555555555 999999873 799999999 567789999964 999
Q ss_pred CeEeecCCccccc
Q 019066 295 GELLGIPPAKQIF 307 (346)
Q Consensus 295 G~iv~~g~~~~l~ 307 (346)
|++...++.+++.
T Consensus 800 g~v~~~~~~~~l~ 812 (934)
T 3thx_A 800 LHVTALTTEETLT 812 (934)
T ss_dssp EEEEEEEETTEEE
T ss_pred eEEEEEecCCcEE
Confidence 9999887776653
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-17 Score=144.29 Aligned_cols=112 Identities=16% Similarity=-0.005 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC---CceEEECceeCCCcccccccccCCCCccceeecccccccchhhch
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 179 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~ 179 (346)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.++..........+..+.+++. ..++.|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~-------~~~~~~~~ 70 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGAD-------VVIASPVK 70 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------------CHHHHHHHHTCE-------EEEECSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccccCCccchhHHHHHhcCCc-------eEEECCCc
Confidence 5899999999999999999999999 87 899999998854100000000000112211 01223332
Q ss_pred HhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccc-ccceeeeeechhhhcccCCCCCCHHHHHHHHHHH
Q 019066 180 NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIR-KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVAT 258 (346)
Q Consensus 180 ~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IAr 258 (346)
.++ + . . ...+. .+++.+.+.. +| ||+|+|+|. |||||+||++|||
T Consensus 71 ~~~---i----~-------~-~~~~~---------~a~l~~~i~~~l~-g~dt~i~Eg---------lSgGq~qri~lAR 116 (171)
T 2f1r_A 71 LAF---I----R-------R-VSEEE---------GNDLDWIYERYLS-DYDLVITEG---------FSKAGKDRIVVVK 116 (171)
T ss_dssp EEE---E----E-------E-CCHHH---------HTCHHHHHHHHTT-TCSEEEEES---------CGGGCCCEEEECS
T ss_pred EEE---E----e-------c-CChhh---------hhCHHHHHHhhCC-CCCEEEECC---------cCCCCCcEEEEEe
Confidence 221 0 0 0 00110 3455555666 77 899999984 8999999999999
Q ss_pred hc
Q 019066 259 TF 260 (346)
Q Consensus 259 AL 260 (346)
|+
T Consensus 117 al 118 (171)
T 2f1r_A 117 KP 118 (171)
T ss_dssp SG
T ss_pred cc
Confidence 98
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-15 Score=133.61 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=35.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
+|+++|++|.|+. . + +++ |++.+|+.++|+|+||||||||+|.|+|........|+.|.+.+
T Consensus 3 ~l~~~~~~~~~~~--~--~---l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMSA--P--D---IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEEE--S--S---GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheeec--C--C---HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 5899999999963 2 2 666 89999999999999999999999999998710001177887765
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-14 Score=152.97 Aligned_cols=90 Identities=18% Similarity=0.272 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC---
Q 019066 204 SLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD--- 269 (346)
Q Consensus 204 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~--- 269 (346)
+..+++ ++|..+||... .+++++.+|||||+||++||++| ||||++||+
T Consensus 480 ei~~Rl-~~L~~vGL~~l----------------~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~ 542 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYL----------------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 542 (972)
T ss_dssp HHHHHH-HHHHHHTCTTS----------------BSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGH
T ss_pred HHHHHH-HHhhhCCCCcc----------------ccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHH
Confidence 445555 56899999752 25889999999999999999998 999999984
Q ss_pred -------------CceEEEEec-hhhhccccEEEEEe------cCCeEeecCCccccccCCC
Q 019066 270 -------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 270 -------------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 311 (346)
|.|||+|+| ......||||++ | ++|++++.|++++++..+.
T Consensus 543 ~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~-LgpgaG~~gG~iv~~G~~~e~~~~~~ 603 (972)
T 2r6f_A 543 DRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLID-IGPGAGIHGGEVVAAGTPEEVMNDPN 603 (972)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEE-ECSSSGGGCCSEEEEECTTTTTTCTT
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEE-eCCCccCCCCEEEEecCHHHHHhhhH
Confidence 899999999 334457999964 8 8999999999999987654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-14 Score=154.08 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-----------CccccCCCC--
Q 019066 203 SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-----------NCPYLSFRD-- 269 (346)
Q Consensus 203 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-----------DEPts~Ld~-- 269 (346)
.+..+++. .|..+||... .+++++.+|||||+|||+||++| ||||++||+
T Consensus 354 ~ei~~rl~-~L~~vGL~~l----------------~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~ 416 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYL----------------GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPAD 416 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTS----------------BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGG
T ss_pred HHHHHHHH-HHHhCCCCcC----------------CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHH
Confidence 34556665 6889999852 15889999999999999999999 999999974
Q ss_pred --------------CceEEEEec-hhhhccccEEEEEe------cCCeEeecCCccccccCCC
Q 019066 270 --------------DKPVVVVTH-GDLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 311 (346)
Q Consensus 270 --------------g~tviiiTH-~~~~~~aDri~v~l------~~G~iv~~g~~~~l~~~~~ 311 (346)
|.|||+|+| ..+...||+|++ | ++|+++..|+++++...+.
T Consensus 417 ~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~-lgpgaG~~~G~iv~~g~~~~~~~~~~ 478 (842)
T 2vf7_A 417 TEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD-VGPEAGEKGGEILYSGPPEGLKHVPE 478 (842)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE-ECSSSGGGCCSEEEEECGGGGGGCTT
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE-eCCCcccCCCEEEEecCHHHHHhchH
Confidence 899999999 345567999965 9 8999999999999987654
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=135.33 Aligned_cols=55 Identities=11% Similarity=-0.010 Sum_probs=45.5
Q ss_pred hcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC----------------CceEEEEec-hhhhccccE
Q 019066 238 VLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDR 287 (346)
Q Consensus 238 ~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDr 287 (346)
...+++..||||||||++||++| |||+++||+ +.++|+||| ......||+
T Consensus 326 ~~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~ 405 (430)
T 1w1w_A 326 KRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDA 405 (430)
T ss_dssp CCCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSE
T ss_pred ccccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCE
Confidence 34456678999999999999998 999999984 579999999 556678999
Q ss_pred EEEEec
Q 019066 288 ARIRTY 293 (346)
Q Consensus 288 i~v~l~ 293 (346)
+++ +.
T Consensus 406 ~~~-~~ 410 (430)
T 1w1w_A 406 LVG-VY 410 (430)
T ss_dssp EEE-EE
T ss_pred EEE-EE
Confidence 965 53
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-15 Score=137.41 Aligned_cols=134 Identities=12% Similarity=0.002 Sum_probs=74.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+|+||++++|+++||+||||||||||+++|+|++. . +.++ . .++.+++++++. .+
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-----~----~~~~--~------------~~~~i~~v~~d~-~~ 70 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-----Q----NEVE--Q------------RQRKVVILSQDR-FY 70 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT-----G----GGSC--G------------GGCSEEEEEGGG-GB
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-----h----hccc--c------------cCCceEEEeCCc-Cc
Confidence 666999999999999999999999999999999873 1 1121 0 112345666663 22
Q ss_pred ccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 172 SDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 172 ~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
..+ +.++..+.. ....+. .+.....+.+.+.++.+ .+ ....++..||+||
T Consensus 71 ~~l~~~~~~~~~~----~~~~~~------~~~~~~~~~~~~~L~~l--~~-----------------~~~~~~~~ls~g~ 121 (245)
T 2jeo_A 71 KVLTAEQKAKALK----GQYNFD------HPDAFDNDLMHRTLKNI--VE-----------------GKTVEVPTYDFVT 121 (245)
T ss_dssp CCCCHHHHHHHHT----TCCCTT------SGGGBCHHHHHHHHHHH--HT-----------------TCCEEECCEETTT
T ss_pred cccCHhHhhhhhc----cCCCCC------CcccccHHHHHHHHHHH--HC-----------------CCCeecccccccc
Confidence 122 233222110 000000 00111123344455543 11 1245677999999
Q ss_pred HHHHHHHHhc---------CccccCCC------CCceEEEEech
Q 019066 251 QYNQIVATTF---------NCPYLSFR------DDKPVVVVTHG 279 (346)
Q Consensus 251 rQRv~IArAL---------DEPts~Ld------~g~tviiiTH~ 279 (346)
+||+++ +++ |||....+ .+.+|+++||+
T Consensus 122 ~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~ 164 (245)
T 2jeo_A 122 HSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDS 164 (245)
T ss_dssp TEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCH
T ss_pred cCccCc-eEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCH
Confidence 999987 344 88887755 48899999993
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-15 Score=130.03 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=63.5
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccc
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL 151 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~ 151 (346)
+.+++++.|++. . + ++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.++..
T Consensus 9 ~~~~~~~~~g~~-~--~---l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l------~~~G~V~~~g~~i~~---- 72 (158)
T 1htw_A 9 PDEFSMLRFGKK-F--A---EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI------GHQGNVKSPTYTLVE---- 72 (158)
T ss_dssp CSHHHHHHHHHH-H--H---HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT------TCCSCCCCCTTTCEE----
T ss_pred CCHHHHHHHHHH-H--H---HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC------CCCCeEEECCEeeee----
Confidence 345667777542 2 4 66699999999999999999999999999999998 468999999987641
Q ss_pred cccccCCCCccceeecccccccc-hhhchH
Q 019066 152 QEYTIPRGSNSFSLYDTRSLSDD-ASDNIN 180 (346)
Q Consensus 152 ~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~ 180 (346)
.+... .+++|....+ .+ +.+++.
T Consensus 73 -~~~~~----~~~~q~~~l~-~ltv~e~l~ 96 (158)
T 1htw_A 73 -EYNIA----GKMIYHFDLY-RLADPEELE 96 (158)
T ss_dssp -EEEET----TEEEEEEECT-TCSCTTHHH
T ss_pred -eccCC----Ccceeccccc-cCCcHHHHH
Confidence 11111 2566765555 44 566653
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-14 Score=125.28 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=34.9
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCC--CCCCCceEEECcee
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK--FASERAQVTYNSSV 144 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~--~~p~~G~I~~~g~~ 144 (346)
-|++|++++|+||||||||||+++|+|++.... .....+.+++++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 589999999999999999999999999766110 00033466666543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-15 Score=133.52 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=26.5
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|++++|+||||||||||+++|+|++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999999998
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-13 Score=147.78 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=33.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++||||++++|++++|+||||||||||+|+|+++.-
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~ 698 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI 698 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH
Confidence 677999999999999999999999999999987643
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-14 Score=128.85 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=42.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT 168 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~ 168 (346)
|++++|+||||||||||+++|+|+++ ++| |.++|.+.. .....++.+++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~------~~~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTE------EVRQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECC------EEETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecc------hhHhhhceEEEEEEec
Confidence 78999999999999999999999996 568 999987764 2222345667777765
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-14 Score=137.34 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=41.2
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
..++|++++|+||||||||||+++|+|+++ |++|+|.+.|.|+.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTF 168 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeeccc
Confidence 347899999999999999999999999999 99999999999875
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.38 E-value=7.4e-15 Score=146.78 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=45.7
Q ss_pred eeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 93 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 93 ~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+++||++++|++++|+|+||||||||+++|+|+++ +++|+|.++|.++.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDTF 332 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCTT
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCccc
Confidence 45999999999999999999999999999999999 99999999887764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-13 Score=132.31 Aligned_cols=122 Identities=11% Similarity=-0.007 Sum_probs=77.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEEC-ceeCCCcccccccccCCCCccceeecccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SSVGDGTYFLQEYTIPRGSNSFSLYDTRS 170 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~-g~~i~~~~~~~~~~~~r~~i~~~~~d~~~ 170 (346)
++++++. .+|++++|+||||||||||+|+|+|+... ++.|+|.++ |.... .-.+..+++++++...
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g~~--------tt~~~~i~~v~q~~~l 272 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLGQH--------TTTAARLYHFPHGGDV 272 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC---------------------CCCEEEECTTSCEE
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCCcc--------ceEEEEEEEECCCCEe
Confidence 5557775 48999999999999999999999998741 578999887 65432 0112233444444322
Q ss_pred cccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHH
Q 019066 171 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 250 (346)
Q Consensus 171 ~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGq 250 (346)
+ +.+ ++.++.. ...+..+..+.+.++++.+++.. +.++++.+|| ||
T Consensus 273 ~-----dtp-----gv~e~~l------~~l~~~e~~~~~~e~l~~~gl~~-----------------f~~~~~~~lS-G~ 318 (358)
T 2rcn_A 273 I-----DSP-----GVREFGL------WHLEPEQITQGFVEFHDYLGHCK-----------------YRDCKHDADP-GC 318 (358)
T ss_dssp E-----ECH-----HHHTCCC------CCCCHHHHHHTSGGGGGGTTCSS-----------------STTCCSSSCT-TC
T ss_pred c-----Ccc-----cHHHhhh------cCCCHHHHHHHHHHHHHHcCCch-----------------hcCCCcccCC-HH
Confidence 1 111 2323211 11234455677788899999987 5688999999 99
Q ss_pred HHHHHHHHhc
Q 019066 251 QYNQIVATTF 260 (346)
Q Consensus 251 rQRv~IArAL 260 (346)
+||++||+++
T Consensus 319 ~~r~ala~gl 328 (358)
T 2rcn_A 319 AIREAVENGA 328 (358)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 9999999998
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-14 Score=137.11 Aligned_cols=131 Identities=14% Similarity=0.032 Sum_probs=79.6
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE---CceeCCCcccccccccCCCCccceeeccccc--
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL-- 171 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~-- 171 (346)
|++.+|++++|+||||||||||+|+|. +++ |++|+|.+ +|+++.... +... ...+++++|.+...
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~~~--~~~~--~~~~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTTGV--RLIP--FGKGSFVGDTPGFSKV 229 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCCCE--EEEE--ETTTEEEESSCCCSSC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCceeeE--EEEE--cCCCcEEEECcCcCcC
Confidence 356789999999999999999999999 998 99999999 888765211 1111 12457787765321
Q ss_pred ---ccc-hhhchH-hhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCC
Q 019066 172 ---SDD-ASDNIN-MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 246 (346)
Q Consensus 172 ---~~~-v~qn~~-~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~L 246 (346)
..+ + +++. .++.. . ... ..........+...++.++++.++|.+. ..++++..|
T Consensus 230 ~l~~~lt~-e~l~~~f~~~-~-~~~--c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~l 288 (302)
T 2yv5_A 230 EATMFVKP-REVRNYFREF-L-RYQ--CKYPDCTHTNEPGCAVKEAVKNGEISCE----------------RYKSYLKII 288 (302)
T ss_dssp CGGGTSCG-GGGGGGCGGG-H-HHH--HHSTTCCSSSCTTCHHHHHHHTTSSCHH----------------HHHHHHHHT
T ss_pred cccccCCH-HHHHHHHHHH-H-Hcc--CCCCCCCCCCCCCCHHHHHHHcCCCCHH----------------HHHHHHHHH
Confidence 222 3 3331 11100 0 000 0000001122334678899999999853 358889999
Q ss_pred CHHHHHHHHHHH
Q 019066 247 DVEKQYNQIVAT 258 (346)
Q Consensus 247 SgGqrQRv~IAr 258 (346)
||.+++++.|||
T Consensus 289 s~~~~R~~~~~~ 300 (302)
T 2yv5_A 289 KVYLEEIKELCR 300 (302)
T ss_dssp TCCCTTHHHHSS
T ss_pred HHHHHHHHHHhc
Confidence 999899999987
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=116.48 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=41.9
Q ss_pred ceeeeE-EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl-~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
|+++.+ .+++|++++|+||||||||||++.|++... +..|.|.+.+.+
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~~ 60 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTTE 60 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEESS
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEcc
Confidence 555887 899999999999999999999999999988 778888876544
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.36 E-value=8.4e-15 Score=150.98 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=73.7
Q ss_pred cEEEeeeEEEeCCCCceecccCce-------eeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC-CCceEEEC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMT-------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQVTYN 141 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~-------~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p-~~G~I~~~ 141 (346)
.++++||++.|+.... ..++.++ +.+|+++. ++|+||||||||||+++|+|++. | ++|.|+++
T Consensus 10 ~i~~~~l~~~~~~~~r-~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEEKVR-PCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGIVTRC 80 (608)
T ss_dssp ----------CHHHHH-HHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------CCCS
T ss_pred hhhhhhhhHHHHHHHH-HHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCeEEEc
Confidence 5899999999964321 1211100 12466654 99999999999999999999998 8 79999999
Q ss_pred ceeCCCcccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcc
Q 019066 142 SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 221 (346)
Q Consensus 142 g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 221 (346)
|.++...... .....++.++|++|+...+... ++.+|+.+........ ..++...
T Consensus 81 g~~i~~~~~~-~~~~~~~~i~~v~Q~~~l~~~~----------tv~e~i~~~~~~~~~~--------------~~~~s~~ 135 (608)
T 3szr_A 81 PLVLKLKKLV-NEDKWRGKVSYQDYEIEISDAS----------EVEKEINKAQNAIAGE--------------GMGISHE 135 (608)
T ss_dssp CEEEEEEECS-SSSCCEEEESCC---CCCCCHH----------HHHTTHHHHHHHHHCS--------------SSCCCSC
T ss_pred CEEEEEecCC-ccccceeEEeeecccccCCCHH----------HHHHHHHHHHHHhcCC--------------ccccchH
Confidence 9986311000 0111133455666554433222 4444443321110000 0011110
Q ss_pred cc----cccc-eeeeeechhhhcccCCCCCCHH-HHHHHHHHHhc-CccccCCCCCceEEEEec
Q 019066 222 VI----RKVN-FVIFVVDGLAVLKSMEGDSDVE-KQYNQIVATTF-NCPYLSFRDDKPVVVVTH 278 (346)
Q Consensus 222 ~~----~~~~-~~~~~v~e~~~~~~~~~~LSgG-qrQRv~IArAL-DEPts~Ld~g~tviiiTH 278 (346)
.. ..|+ --.+++||+|+.......|+.+ ++|...+++.+ .+|. +.+++++||
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~-----~iil~vvt~ 194 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE-----TISLVVVPS 194 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSS-----CCEEEEEES
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCC-----CCceEEEec
Confidence 00 0000 1147888888766656666654 55666777764 3332 345666666
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-12 Score=109.66 Aligned_cols=87 Identities=11% Similarity=-0.078 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHc-CCCcccccccc---eeeeeechhhhcccCCCCCCHHHHHHHHHH------Hhc---------Ccccc
Q 019066 205 LRNRMRCKAHKI-GCEPSVIRKVN---FVIFVVDGLAVLKSMEGDSDVEKQYNQIVA------TTF---------NCPYL 265 (346)
Q Consensus 205 ~~~~~~~~l~~~-~l~~~~~~~~~---~~~~~v~e~~~~~~~~~~LSgGqrQRv~IA------rAL---------DEPts 265 (346)
..+.+.+.+..+ +-.-....+.+ +|++.+-.. ..++++.+||||||||++|| ||| ||||+
T Consensus 14 i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~ 92 (148)
T 1f2t_B 14 IGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWE-GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTP 92 (148)
T ss_dssp HHHHHHHHHHHHTTTSCCEEEEEETTSSEEEEEEET-TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSC
T ss_pred HHHHHHHHHHHhhCCcchhHHhhhhcCceEEEeccc-cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCc
Confidence 344555666666 32222222333 788877444 34788999999999999886 777 99999
Q ss_pred CCCC----------------CceEEEEec-hhhhccccEEEEEec
Q 019066 266 SFRD----------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 266 ~Ld~----------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
+||. |.|+|+||| ..+..+||++++ |+
T Consensus 93 ~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~-l~ 136 (148)
T 1f2t_B 93 YLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR-IS 136 (148)
T ss_dssp TTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE-EE
T ss_pred cCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEE-EE
Confidence 9984 789999999 556788999964 73
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-14 Score=139.63 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=36.9
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+|+++||++.|++.. + ++++||+| +|+|+||||||||+|+|+|+..
T Consensus 9 ~~~l~~~~l~~~y~~~~---v---l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKS---V---KRGFEFTL------MVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp ------CCCCCCTTTTT---C---C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC
T ss_pred cCcEEEEecceeECCEE---E---ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC
Confidence 34699999999997643 4 66699998 9999999999999999999987
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.2e-14 Score=133.54 Aligned_cols=122 Identities=12% Similarity=-0.040 Sum_probs=77.4
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE---CceeCCCcccccccccCCCCccceeecccc-cc
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRS-LS 172 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~-~~ 172 (346)
|++.+|++++|+||||||||||+|+|+|+.+ |++|+|.+ +|+++.... +. ...+.+++++|.+.. ..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~~~--~~--~~~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTTTA--QL--LKFDFGGYVVDTPGFANL 234 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCCSC--CE--EECTTSCEEESSCSSTTC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCceeee--EE--EEcCCCCEEEECcCCCcc
Confidence 5677899999999999999999999999999 99999999 898875211 11 112356888888743 23
Q ss_pred cchhhc----hHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCC
Q 019066 173 DDASDN----INMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 247 (346)
Q Consensus 173 ~~v~qn----~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LS 247 (346)
++++++ ..+++. ++ +|+.++...+ ..+...++.++|+.++|+.. .+++++++||
T Consensus 235 ~~~~~~~~~~~~l~~~~~~-~n~~~~~~~~----~~e~~~~v~~~l~~~~L~~~----------------~~~~~~~~ls 293 (301)
T 1u0l_A 235 EINDIEPEELKHYFKEFGD-KQCFFSDCNH----VDEPECGVKEAVENGEIAES----------------RYENYVKMFY 293 (301)
T ss_dssp CCCSSCHHHHGGGSTTSSS-CCCSSTTCCS----SSCSSCHHHHHHHHTSSCHH----------------HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhccc-ccCcCCCCcC----CCCCCcHHHHHHHcCCCCHH----------------HHHHHHHHHH
Confidence 444443 345554 56 8887753221 12334678899999999632 4678888888
Q ss_pred H
Q 019066 248 V 248 (346)
Q Consensus 248 g 248 (346)
+
T Consensus 294 e 294 (301)
T 1u0l_A 294 E 294 (301)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-13 Score=140.46 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=30.8
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|+||+ |++++|+||||||||||+|+|+|+..
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 6779999 99999999999999999999999863
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-14 Score=133.83 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=84.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc--------cCCCCCCCCceEEECceeCCCcccccccccCCCCccceee-ccccccc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF--------ENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY-DTRSLSD 173 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~--------~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~-d~~~~~~ 173 (346)
++++|+|+||||||||+|.|.|+. . ++.|+|.+||.++.... .+-..+...++..... +.+...+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-----~d~G~i~idg~~l~~~~-~~~~el~~gCicc~~~~~~~~~l~ 78 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-----NEFGEVSVDDQLIGDRA-TQIKTLTNGCICCSRSNELEDALL 78 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-----SSCCSCCEEEEEECTTS-CEEEEETTSCEEECTTSCHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-----ecCcccCccHHHHhCCC-CCEEEECCCceEEcccHHHHHHHH
Confidence 689999999999999999999987 5 89999999998875210 0001111111111110 1111111
Q ss_pred ch---hhchHhh-HHHHHhhhhcchhhccCCChHHHHHHH---HHHHHHcCCCcccccccceeeeeechhhhcccCCCCC
Q 019066 174 DA---SDNINMI-KLWIMEGVRHGELVIRRSDSSSLRNRM---RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 246 (346)
Q Consensus 174 ~v---~qn~~~~-~~~v~~~i~~~~~~~~~~~~~~~~~~~---~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~L 246 (346)
.+ +|+..+. ..++.+++.++. ........ .+.-+.. ..+++.++||...+.++.. +|
T Consensus 79 ~l~~~~q~~~~~~~~~v~E~~~l~~-------p~~~~~~~~~~~~~~~~~--------~l~~~l~~vd~~~~~~~~~-~l 142 (318)
T 1nij_A 79 DLLDNLDKGNIQFDRLVIECTGMAD-------PGPIIQTFFSHEVLCQRY--------LLDGVIALVDAVHADEQMN-QF 142 (318)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTCC-------HHHHHHHHHHSHHHHHHE--------EEEEEEEEEETTTHHHHHH-HC
T ss_pred HHHhHHhcCCCCCCEEEEeCCCCCC-------HHHHHHHHhcCccccCeE--------EECCEEEEEEHHHHHHHHh-hc
Confidence 11 1221110 012222222110 01100000 0111111 2245678888776655544 89
Q ss_pred CHHHHHHHHHHHhc-------CccccC-------CCCCceEEEEec
Q 019066 247 DVEKQYNQIVATTF-------NCPYLS-------FRDDKPVVVVTH 278 (346)
Q Consensus 247 SgGqrQRv~IArAL-------DEPts~-------Ld~g~tviiiTH 278 (346)
|+||+||+..++++ ||| .. +.++.||+++||
T Consensus 143 s~g~~Q~~~ad~ill~k~dl~de~-~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 143 TIAQSQVGYADRILLTKTDVAGEA-EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp HHHHHHHHTCSEEEEECTTTCSCT-HHHHHHHHHHCSSSCEEECCS
T ss_pred hHHHHHHHhCCEEEEECcccCCHH-HHHHHHHHHhCCCCeEEEecc
Confidence 99999999998888 787 22 335899999999
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.4e-15 Score=145.79 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=48.8
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++++++++.|+... + |+++ + ..+|++++|+||||||||||+++|+|++. |++|+|.+.+.++.
T Consensus 144 ~~l~~Lg~~~~~~~---~---L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 144 LDLHSLGMTAHNHD---N---FRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIE 206 (418)
T ss_dssp CCGGGSCCCHHHHH---H---HHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCC
T ss_pred CCHHHcCCCHHHHH---H---HHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccch
Confidence 45555555553211 2 4446 4 37999999999999999999999999999 89999999987764
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.3e-14 Score=135.40 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=44.6
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-CceEEECceeCCCcccccccccCCCCccceee
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLY 166 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~ 166 (346)
+++|++++|+||||||||||+++|+|+++ |+ +|+|.+.+.++. + ..+..+++++|
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~e-------~-~~~~~~~~v~Q 188 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIE-------Y-VFKHKKSIVNQ 188 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSCC-------S-CCCCSSSEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccHh-------h-hhccCceEEEe
Confidence 78999999999999999999999999999 87 899988775543 1 12334567776
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-12 Score=124.94 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=41.1
Q ss_pred ceee-eEEecCCcEEEEEcCCCCCHHHHHHHHhhhc--cCCCCCCCC----ce-EEECcee
Q 019066 92 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASER----AQ-VTYNSSV 144 (346)
Q Consensus 92 L~~i-sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~--~~~~~~p~~----G~-I~~~g~~ 144 (346)
|+.+ ++.|++|++++|+||||||||||++.|++.. + |++ |. |++++.+
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~-----~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP-----PEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTSCSCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-----hhcCCCCCeEEEEeCCC
Confidence 4445 7899999999999999999999999999998 5 666 67 8888755
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-12 Score=135.56 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=32.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++|+ ++|++++|+||||||||||+|+|+|+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 7779999 9999999999999999999999999864
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-13 Score=130.48 Aligned_cols=91 Identities=10% Similarity=0.039 Sum_probs=69.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++++++.|+... + |+++||++.+|++++|+||||||||||+|+|+|++. |++|+|.+.|.++....
T Consensus 29 ~ie~~~~~~~~~~~~---~---l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~~~~~ 97 (337)
T 2qm8_A 29 LAESRRADHRAAVRD---L---IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDPSSTR 97 (337)
T ss_dssp HHTCSSHHHHHHHHH---H---HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECGGGGS
T ss_pred HHeeCCcccccChHH---H---HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcCcccc
Confidence 588999999996422 4 667999999999999999999999999999999999 99999999998874211
Q ss_pred cccccccCCCCccceeeccccc
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
......-.++.+++++|+...+
T Consensus 98 ~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 98 TGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp SCCCSSCCGGGSTTGGGCTTEE
T ss_pred cccchHHHhhhheeeccCcccc
Confidence 0000111234567777766554
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-12 Score=122.62 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=43.9
Q ss_pred eeeEEEeCCCCceecccCceeeeE-------EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCC-CceEEECc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNS 142 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl-------~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~-~G~I~~~g 142 (346)
..++++|-.... .. |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+
T Consensus 92 ~~~~iR~~~~~~-~~---l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~e 159 (356)
T 3jvv_A 92 AGAVFRTIPSKV-LT---MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTIE 159 (356)
T ss_dssp EEEEEEEECCSC-CC---TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEEE
T ss_pred cEEEEEECCCCC-CC---HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEcc
Confidence 355666633221 13 444665 778999999999999999999999999998 77 56665443
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-13 Score=119.37 Aligned_cols=41 Identities=29% Similarity=0.352 Sum_probs=36.0
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.+++|++++|+||||||||||+++|++.+ +.|.|.++|.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~-------~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP-------GVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS-------SSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc-------CCCeEEEcccch
Confidence 47899999999999999999999999963 479999998765
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3.4e-11 Score=111.80 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=27.7
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|++++|+||||||||||++.|++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999999999765
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=9.1e-12 Score=124.52 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=46.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCEEcc
Confidence 7779999999 9999999999999999999999999 99999999998875
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-11 Score=105.38 Aligned_cols=66 Identities=9% Similarity=-0.057 Sum_probs=57.8
Q ss_pred ccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEE
Q 019066 225 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVV 276 (346)
Q Consensus 225 ~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviii 276 (346)
+..|++..+...+...+.+..||||||||++|||+| ||||++||+ +.++|+|
T Consensus 44 ~~~gl~i~~~~~~~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivi 123 (173)
T 3kta_B 44 FSGGLEIEAKPAGKDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVI 123 (173)
T ss_dssp GGSCEEEEEETTSSSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred cccCceEEecCCCccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEE
Confidence 446888999888888888999999999999999998 999999984 6789999
Q ss_pred ec-hhhhccccEEEE
Q 019066 277 TH-GDLLSLTDRARI 290 (346)
Q Consensus 277 TH-~~~~~~aDri~v 290 (346)
|| ..+...||+++.
T Consensus 124 th~~~~~~~ad~i~~ 138 (173)
T 3kta_B 124 TLRDVMMANADKIIG 138 (173)
T ss_dssp CSCHHHHTTCSEEEE
T ss_pred EecHHHHHhCCEEEE
Confidence 99 667788999964
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-12 Score=125.25 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=53.6
Q ss_pred EEeeeEEE---eCCCCceecc------cCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 72 DAKNKILS---YTPGAWIENV------GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 72 ~~~~l~~~---y~~~~~~~~l------~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
+|++++|+ |++... .++ +-++++||+|++|++++|+||||||||||+++|+|+++ |++|.|.++|
T Consensus 137 ~f~~v~f~~~~Y~~~~~-~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~ 210 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQ-ELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIED 210 (361)
T ss_dssp TTSCCCCSCSCCCHHHH-HHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEES
T ss_pred CcCccccccccccchhH-HHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECC
Confidence 78888888 753111 121 00266999999999999999999999999999999999 9999999987
Q ss_pred e
Q 019066 143 S 143 (346)
Q Consensus 143 ~ 143 (346)
.
T Consensus 211 ~ 211 (361)
T 2gza_A 211 V 211 (361)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-12 Score=128.88 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=39.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcE--EEEEcCCCCCHHHHHHHHhhhc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~--iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.|++++ ++.|++. . |+++||+|++|++ ++|+||||||||||+|+|+|+.
T Consensus 16 ~l~~~~-~~~y~~~--~-----L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-----DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC----C-----HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECCe--e-----cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 477888 8889652 1 5569999999999 9999999999999999999985
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=101.76 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=34.8
Q ss_pred ceeeeE-EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 92 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 92 L~~isl-~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
|+.+.. .+++|++++|+||||||||||++.|++ . +..+.++++.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~i~~ 53 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAYVDT 53 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEEEES
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEEEEC
Confidence 444654 689999999999999999999999999 4 4445555543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-13 Score=132.09 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=52.4
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCC-------cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~G-------e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
+++.++++..|+... + ++++++.|.+| +.++|+||||||||||+++|++.+... +.+++|.+..++
T Consensus 18 ~lr~~~l~~~~g~~~---~---~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-~~~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQEN---V---KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCHH---H---HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-EEEEETTTCCSH
T ss_pred HcCCccHHHccCcHH---H---HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-EEEEechHhcCH
Confidence 467778888786533 3 66699999877 899999999999999999999998210 006778777666
Q ss_pred eeC
Q 019066 143 SVG 145 (346)
Q Consensus 143 ~~i 145 (346)
.++
T Consensus 91 ~~l 93 (334)
T 1in4_A 91 GDM 93 (334)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.07 E-value=8.4e-13 Score=115.17 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
|++++|+||||||||||+++|++ +.+|.++++|.++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccch
Confidence 68999999999999999999986 3568999998765
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.8e-12 Score=118.79 Aligned_cols=109 Identities=12% Similarity=0.062 Sum_probs=54.0
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE---CceeCCCcccccccccCCCCccceeecccccc-
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS- 172 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~---~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~- 172 (346)
+++.+|++++|+||||||||||+|+|.|+.+ +..|+|.+ +|+.+... .+.... ..+++++.+....
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt~~--~~~~~~---~~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTTRH--VELIHT---SGGLVADTPGFSSL 237 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------CCC--CCEEEE---TTEEEESSCSCSSC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcccccH--HHHhhc---CCEEEecCCCcccc
Confidence 7788999999999999999999999999999 99999998 78776421 111111 1467777654322
Q ss_pred ---cc-hhhchH-hhHHH--HHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCc
Q 019066 173 ---DD-ASDNIN-MIKLW--IMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 220 (346)
Q Consensus 173 ---~~-v~qn~~-~~~~~--v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 220 (346)
.+ + +++. .++.. ......|. ......+....+.++++.++|.+
T Consensus 238 ~l~~lt~-e~l~~~f~~~~~~~~~C~f~----~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 238 EFTDIEE-EELGYTFPDIREKSSSCKFR----GCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp CCTTCCH-HHHGGGSHHHHHHGGGCSST----TCCSSSCSSCHHHHHHHHTSSCH
T ss_pred ccccCCH-HHHHHHHHHHHHHhhhcccc----CCCCccCHHHHHHHHHHhCCChH
Confidence 22 3 4442 22211 10111111 00111223456888999999986
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.01 E-value=9.3e-12 Score=116.97 Aligned_cols=126 Identities=15% Similarity=0.028 Sum_probs=69.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeecccccccchhhch
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 179 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~ 179 (346)
.++.+++|+|++|||||||++.|.+++. +. | .... .+.++.+|...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~-----~~-g------~~~~-------------~~~iv~~D~f~~~~------ 77 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM-----EK-Y------GGEK-------------SIGYASIDDFYLTH------ 77 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HH-H------GGGS-------------CEEEEEGGGGBCCH------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh-----hc-C------CCCc-------------eEEEeccccccCCh------
Confidence 4678999999999999999999999998 53 2 0000 11233455433322
Q ss_pred HhhHHHHHhhhhcch-----hhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHH
Q 019066 180 NMIKLWIMEGVRHGE-----LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 254 (346)
Q Consensus 180 ~~~~~~v~~~i~~~~-----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv 254 (346)
+..+|+.++. ......+.....+.+.+.++.+ ++|++|..++......+...+||||+||+
T Consensus 78 -----~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l---------~~g~~t~~~~~v~~p~y~~~~sgGq~~R~ 143 (290)
T 1odf_A 78 -----EDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTI---------FNNNEHPDQDTVVLPKYDKSQFKGEGDRC 143 (290)
T ss_dssp -----HHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHH---------TC------CCEEEECCEETTHHHHTCEEC
T ss_pred -----HHHHHHhccccccchhhhccCcchhHHHHHHHHHHHh---------hccCccccCcceeeccCccccCCcccccc
Confidence 2223332221 1011111111223344444443 34444443332234556779999999999
Q ss_pred HHHH--hc-------CccccCCCCC
Q 019066 255 IVAT--TF-------NCPYLSFRDD 270 (346)
Q Consensus 255 ~IAr--AL-------DEPts~Ld~g 270 (346)
++|+ ++ ||+++++|+.
T Consensus 144 ~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 144 PTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SSCEEEESSCSEEEEEESSTTCCCC
T ss_pred ccccceEcCCCEEEEeCccccCCcc
Confidence 9973 33 9999998863
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-12 Score=122.02 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=41.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+++++|++++| ++|+||||||||||+++|+|.+. + |.|.++|.++.
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPELL 81 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTTTC
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHHHH
Confidence 66699999999 99999999999999999999987 5 78999987764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-10 Score=102.76 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=35.9
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhh--hccCCCCCCCCceEEECcee
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~g--l~~~~~~~p~~G~I~~~g~~ 144 (346)
-|++|++++|+||||||||||++.|++ +.++.......|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 489999999999999999999999999 45400000156788888765
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.7e-10 Score=97.42 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=32.4
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
|+++.+|++++|+||||||||||+++|+|++ | .+.+.+.++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~------~---~~~~~~~~~~ 42 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL------A---EIKISISHTT 42 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS------S---SEEECCCEEC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC------C---CeEEeceecc
Confidence 5788999999999999999999999999996 4 3666665543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-11 Score=114.29 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=56.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEe-------------------cCCcEEEEEcCCCCCHHHHHHHHhhhccC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFEN 128 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i-------------------~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~ 128 (346)
..+|+++||++.|. . + +++++|.+ .+|+++||+||||||||||+++|+|++..
T Consensus 35 ~~~i~~~~v~~~y~---~--~---~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL---P--L---SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp CTTCCHHHHHHTHH---H--H---HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccccchHhHHHHHH---H--H---HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44699999999993 2 3 66699988 99999999999999999999999998751
Q ss_pred CCCCCCCceEEE---CceeC
Q 019066 129 DKFASERAQVTY---NSSVG 145 (346)
Q Consensus 129 ~~~~p~~G~I~~---~g~~i 145 (346)
. |++|+|.+ ||...
T Consensus 107 ~---~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 107 W---PEHRRVELITTDGFLH 123 (308)
T ss_dssp S---TTCCCEEEEEGGGGBC
T ss_pred C---CCCCeEEEEecCCccC
Confidence 1 57899999 77653
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.9e-11 Score=108.22 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=41.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++. |++|+|.++|.++.
T Consensus 9 ~l~l~~~~~~~~~-------------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~~~~ 66 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNTTEA 66 (227)
T ss_dssp EEEEEEETTEEEE-------------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC--------
T ss_pred EEEEEeeecccCC-------------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCEEcc
Confidence 4788887665521 445556 8999999999999999999999999 99999999998873
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-10 Score=101.85 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=35.5
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC--CCceEEECceeC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSSVG 145 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p--~~G~I~~~g~~i 145 (346)
-.-..++|++++|+||||||||||+++|+|+++ | ..|.|.+.+.+.
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-----p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-----LYDTQVSVSHTTRQP 56 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSC-----TTTEEECCCEECSCC
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-----CCceEEEEEecCCCC
Confidence 344679999999999999999999999999997 6 578888776543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-10 Score=109.90 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=32.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-++++|+++.|+.++|+|+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999999999999999984
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-10 Score=102.64 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHh-hhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~-gl~~ 127 (346)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 56699999999999999999999999999999 9985
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-11 Score=111.10 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHh---hhccCCCCCCCCceEEECcee
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~---gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++++++|+||||||||||+++|+ |+.. ++.|+|.++|.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~ 67 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIK 67 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHh
Confidence 47899999999999999999999 9988 899999887754
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-10 Score=104.41 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=35.0
Q ss_pred CCcEEEeee-EEEeCCCCceecccCceeeeEEecC---CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 68 GSLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 68 ~~~l~~~~l-~~~y~~~~~~~~l~~L~~isl~i~~---Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+++|| +|+|++... + |+++||+|.+ |++++|+|++||||||+.++|++.+.
T Consensus 15 ~~~l~~~~~~~~~~~~~~~--~---l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQ--I---LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -----------------CH--H---HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEcceeeEEecCcch--h---hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 347999999 999933333 4 6779999999 99999999999999999999999765
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.3e-09 Score=101.33 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=42.0
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++|+.++|++++|+|||||||||+++.|++.+. +..|+|.+.+.|..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAADTF 143 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECTT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEccccc
Confidence 567778999999999999999999999999999 88889998877653
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6e-09 Score=102.00 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=33.8
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHH--hhhccCCCCCCCC-----ceEEECcee
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRI--SKVFENDKFASER-----AQVTYNSSV 144 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L--~gl~~~~~~~p~~-----G~I~~~g~~ 144 (346)
-|++|++++|+||||||||||++.| .++.+ ++. +.+++++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p-----~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP-----LDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC-----cccCCCCCcEEEEeCCC
Confidence 5899999999999999999999944 56665 433 378888765
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-09 Score=93.63 Aligned_cols=42 Identities=26% Similarity=0.327 Sum_probs=36.7
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCC---CCceEEECceeC
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS---ERAQVTYNSSVG 145 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p---~~G~I~~~g~~i 145 (346)
.++|++++|+||||||||||+++|+|+++ | +.|.|.++|..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-----~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-----AQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-----HTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCceEEEecCCCcC
Confidence 57899999999999999999999999998 5 467888777654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-09 Score=108.79 Aligned_cols=47 Identities=26% Similarity=0.322 Sum_probs=40.9
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhh--hccCCCCCCCCceEEECceeCC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g--l~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+++++.++..++|.|++||||||++|+|.. ++. .+.|++.+.+.|.+
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK 208 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPK 208 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCS
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCc
Confidence 889999999999999999999999999876 555 66788888877765
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.5e-09 Score=106.82 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=44.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
+++++|.+++|+.++|+||||||||||+++|+|+++ |++|.|.+.|.+
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~ 297 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcc
Confidence 455999999999999999999999999999999999 999999998865
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.7e-09 Score=93.96 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=44.5
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE--EECceeCC
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSSVGD 146 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I--~~~g~~i~ 146 (346)
+|++..++.-. + .+.+++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~~~---~---~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECSVE---K---VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CCCC---H---HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHHHHT
T ss_pred CCCcccccccC---H---HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCchhh
Confidence 45666554432 3 455888889999999999999999999999999986 45877 88887764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.64 E-value=3e-08 Score=85.39 Aligned_cols=40 Identities=25% Similarity=0.260 Sum_probs=35.3
Q ss_pred eeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE
Q 019066 93 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 138 (346)
Q Consensus 93 ~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I 138 (346)
++++|++.+| +++|+||||||||||+++|.+++. +..|..
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~-----~~~~~~ 57 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG-----GLSAKA 57 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT-----CCCTGG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc-----CCcccc
Confidence 5599999999 999999999999999999999987 655543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=6.4e-08 Score=93.53 Aligned_cols=83 Identities=11% Similarity=0.044 Sum_probs=56.5
Q ss_pred HHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHHHHHH------HHHhc----------CccccCCCC---
Q 019066 209 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI------VATTF----------NCPYLSFRD--- 269 (346)
Q Consensus 209 ~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~------IArAL----------DEPts~Ld~--- 269 (346)
+.+.++.+++.......-+.+++.+...+ .+.++..|||||+||++ +|++| ||||++||.
T Consensus 245 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 245 LNEAFSEFDLPYSFVELTKDFEVRVHAPN-GVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHTTCSCSCEEECTTCCEEEEETT-EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHhcCcceEEEEccceeEEEEcCC-CccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 34556666554421122234666665543 23567789999999984 45654 999999984
Q ss_pred ------------CceEEEEec-hhhhccccEEEEEec
Q 019066 270 ------------DKPVVVVTH-GDLLSLTDRARIRTY 293 (346)
Q Consensus 270 ------------g~tviiiTH-~~~~~~aDri~v~l~ 293 (346)
+.+||+||| ..+..+||++++ |+
T Consensus 324 ~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~-l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN-VK 359 (371)
T ss_dssp HHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE-EE
T ss_pred HHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE-EE
Confidence 468999999 457788999965 65
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-08 Score=89.96 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999985
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.3e-08 Score=89.75 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=51.4
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+.++++++.|+.. .++++|+ +|++++|+|+|||||||++..|++++. +..|+|.+.+.|+.
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECCSS
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCCcc
Confidence 5677888888542 2348888 999999999999999999999999999 88899999887754
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.3e-08 Score=90.77 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh-hccCCCCCCCCceEEECceeCC
Q 019066 104 SLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g-l~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.+.|+||+|+|||||+++|++ ++. ++.|.+.++|.+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQFV 76 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC-----TTCCC---------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEecceeec
Confidence 489999999999999999999 788 89999999987653
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.3e-08 Score=85.17 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.3
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4789999999999999999999999999997
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.8e-08 Score=90.04 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=38.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHh---hhccCCCCCCCCceEE--------ECceeCC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT--------YNSSVGD 146 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~---gl~~~~~~~p~~G~I~--------~~g~~i~ 146 (346)
++|++++|+|||||||||++++|+ |++. +++|.++ .+|.++.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~r~~~~~~~~~g~~~~ 77 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIYRVLALAALHHQVDIS 77 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHHHHHHHHHHHTTCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCceehHhHHHHHHcCCCcc
Confidence 789999999999999999999999 9988 9999998 8887763
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-07 Score=83.15 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=25.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++||||++.+|++++|+|++||||||+.+.|++.+.
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 666999999999999999999999999999998774
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-07 Score=82.11 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=26.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|++++|+||||||||||+++|.+.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999986
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-07 Score=82.55 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=32.9
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.++.++|++++|+||||||||||+++|++.+ |.+.++|.++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~~ 64 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEADAFH 64 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGGGGS
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEcccccc
Confidence 4667899999999999999999999999976 66888886653
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.39 E-value=7.5e-07 Score=88.31 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=39.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEEECcee
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV 144 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~~~g~~ 144 (346)
|+++..-+++|+++.|.|++|+|||||+..|++... +..| .|.+.+.+
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVAIFSLE 241 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEEEEESS
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEEEEECC
Confidence 566887899999999999999999999999999876 5445 56665433
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-07 Score=89.40 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=45.5
Q ss_pred eeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 93 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 93 ~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++++|++++|++++|+|+|||||||++..|++.+. +..|+|.+.+.|+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~D~~ 144 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAADTF 144 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCCCc
Confidence 56999999999999999999999999999999999 88899999888864
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-07 Score=82.43 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=38.2
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
..++|++++|+|+||||||||+++|.+++. +..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEeccCc
Confidence 457899999999999999999999999998 8889988876654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.1e-07 Score=77.40 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc--eEEECceeC
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 145 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G--~I~~~g~~i 145 (346)
+|+.++|+||||||||||+++|++.+. + +| .+++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-----E-AGKNAAYIDAASM 75 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-----T-TTCCEEEEETTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-----h-cCCcEEEEcHHHh
Confidence 899999999999999999999999998 6 47 677766554
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-07 Score=80.64 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=32.5
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 136 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G 136 (346)
+|++++|+.++|+||||||||||+++|++.+. +.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 56778899999999999999999999999997 6665
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-07 Score=91.58 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=34.6
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE-EECce
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNSS 143 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I-~~~g~ 143 (346)
+++|+++.|.||+|||||||+..++.... +..|.+ ++++.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVAAFIDAE 98 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEEEESS
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeEEEEecc
Confidence 78999999999999999999999999987 666766 55543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=8.7e-07 Score=76.87 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCC------CCceEEECceeC
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 145 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p------~~G~I~~~g~~i 145 (346)
.++|+|+||||||||++.++|........| +.|.|.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 689999999999999999999875211112 468899998765
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.9e-07 Score=83.59 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=47.5
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.+++++.+.|.... + ++++++++++| ++|+||||||||||+++|++... .|.|.+++.++
T Consensus 26 ~~l~~l~~~~~~~~---~---~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~ 85 (254)
T 1ixz_A 26 EELKEIVEFLKNPS---R---FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 85 (254)
T ss_dssp HHHHHHHHHHHCHH---H---HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHHHHHHHHHCHH---H---HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHH
Confidence 34556666664322 3 66699999999 99999999999999999999875 58888888665
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=4e-07 Score=81.86 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=35.6
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
-+.+.++|++++|+|+||||||||+++|+++ .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence 3445689999999999999999999999986 37788888764
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.18 E-value=4e-07 Score=92.54 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=38.5
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEE-ECceeC
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVT-YNSSVG 145 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~-~~g~~i 145 (346)
.+++|++++|+|+||||||||+++|++.+. |++| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCcHH
Confidence 578999999999999999999999999999 8886 684 888665
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.17 E-value=4.5e-06 Score=80.51 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCC------CCCCCceEEECceeC
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDK------FASERAQVTYNSSVG 145 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~------~~p~~G~I~~~g~~i 145 (346)
+++|+|++|||||||+|.|.|...... ..++.|.|.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 399999999999999999998754100 003567888877553
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.17 E-value=3.6e-07 Score=84.35 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=47.3
Q ss_pred EEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 72 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 72 ~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
+++++.+.|.... + +++++|++++| ++|+||||||||||+++|++... .|.|.+++.++
T Consensus 51 ~l~~l~~~~~~~~---~---l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~ 109 (278)
T 1iy2_A 51 ELKEIVEFLKNPS---R---FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDF 109 (278)
T ss_dssp HHHHHHHHHHCHH---H---HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHH
T ss_pred HHHHHHHHHHCHH---H---HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHH
Confidence 4556666664422 3 66699999999 99999999999999999999875 58899888765
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5e-07 Score=87.67 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=33.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|+++++.+++|++++|+||||||||||+++|++.+.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 566999999999999999999999999999998654
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.15 E-value=4.1e-07 Score=88.21 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=48.0
Q ss_pred CcEEEeeeEEEeCCCCceecccCce--------------eeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 69 SLTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 69 ~~l~~~~l~~~y~~~~~~~~l~~L~--------------~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.-+.|+||++.|+..... |+ |+.+.|.+|+.++|+||+|||||||++.|++...
T Consensus 132 ~ri~Fe~ltp~yP~er~~-----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 132 NKILFENLTPLHANSRLR-----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TSCCTTTSCEESCCSBCC-----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccc-----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 458999999999876543 66 7999999999999999999999999999999874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.1e-07 Score=86.41 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=44.3
Q ss_pred eeeEEEeCCCCceecccCceeeeEEecCCc------EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 74 KNKILSYTPGAWIENVGGMTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 74 ~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge------~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
+.+++.|++.. + |++++..+.+++ ++||+||||||||||+++|.+++... |+.|.|.+-+
T Consensus 64 rll~~~~~~~~---~---l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~---~~~~~v~~i~ 129 (321)
T 3tqc_A 64 RLLSFYVTARQ---T---LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW---PDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHHH---H---HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS---TTCCCEEEEE
T ss_pred HHHHHhhcchH---H---HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc---CCCCeEEEEe
Confidence 34555565433 3 666888888887 99999999999999999999998721 3566655433
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-06 Score=77.68 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999999999987
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-06 Score=74.17 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=31.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 578999999999999999999999875 5567777554
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-06 Score=74.94 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCC------CCceEEECceeC
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSVG 145 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p------~~G~I~~~g~~i 145 (346)
.++|+|+||||||||++.|+|........| ..|.|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 589999999999999999999753111113 357888988765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.6e-06 Score=84.53 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=36.4
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhh------------hccCCCCCCCCceEEECcee
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISK------------VFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~g------------l~~~~~~~p~~G~I~~~g~~ 144 (346)
.+++|..++|+|+||||||||+|+|.| ... |+.|.|.+.|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~-----p~~G~v~v~~~r 69 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID-----PEEAKVAVPDER 69 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC-----TTEEEEEECCHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec-----ceeeeeeeCCcc
Confidence 457899999999999999999999999 334 889999998743
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.9e-06 Score=76.22 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=27.1
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|+...+|++++|+||||||||||++.|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45556899999999999999999999999875
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-06 Score=83.42 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=53.3
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
+++.+++.+.|+... + ++++++.+.+|.+++|+|++|+|||||++.|++.+. +..++|.+-+.+.
T Consensus 30 ~ie~~~~~~~~~~~~---~---~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQALSTQ---L---LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHHHHH---H---HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECC
T ss_pred HhhcCCchhhhHHHH---H---HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEeecC
Confidence 466777777665322 3 566999999999999999999999999999999998 7788888776665
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1e-06 Score=78.21 Aligned_cols=37 Identities=16% Similarity=0.375 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
+.+++|+||+||||||++++|++.+.-.. ++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~--~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHL--LDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc--ccCcceee
Confidence 56899999999999999999998872100 77888876
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.5e-06 Score=79.01 Aligned_cols=41 Identities=15% Similarity=0.404 Sum_probs=35.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc-eEEECceeC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVG 145 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G-~I~~~g~~i 145 (346)
.+|++++|+|||||||||+++.|++.+. +++| +|.+-+.|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcCCEEEEEecCc
Confidence 5799999999999999999999999998 7778 777765553
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.95 E-value=4e-06 Score=71.10 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999886
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4.9e-06 Score=71.27 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=33.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc--eEEECceeC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 145 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G--~I~~~g~~i 145 (346)
.+|++++|+|++||||||++++|.+.+. + .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECChHH
Confidence 4789999999999999999999999987 5 56 666776554
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.7e-06 Score=79.86 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=36.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
+++.+++|+|++|||||||+|.|.|.+. ++.|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEeecCC
Confidence 4578999999999999999999999998 88899888776653
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.88 E-value=8.5e-06 Score=73.37 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.9
Q ss_pred ceeeeEEec---CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 92 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 92 L~~isl~i~---~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
|.++||.+. +|.+++|.|++||||||+++.|...+. + .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCcee
Confidence 666888887 999999999999999999999999998 6 556644
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=5.5e-06 Score=72.65 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=29.0
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+-=++++|++++|+|++|||||||++.|.+.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 334678899999999999999999999999873
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=8.2e-06 Score=68.58 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+++.++++.+| +.+|+||||||||||+.+|.-.+
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 34466677666 99999999999999999998544
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=3.6e-06 Score=87.39 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=35.1
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
|++++++..++|+|++|+|||||++.|++..... +..|+| .+|..+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCccc
Confidence 5678899999999999999999999999877511 367887 566554
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.4e-06 Score=86.58 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=43.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCC-ceEEECceeC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSSVG 145 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~-G~I~~~g~~i 145 (346)
++++++.+.+|+.++|+||||||||||+++|++++. +.. |.+.+++...
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNPE 99 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCTT
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCcc
Confidence 566999999999999999999999999999999998 666 7888877554
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=7.6e-06 Score=72.23 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=38.6
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc--eEEECceeC
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSSVG 145 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G--~I~~~g~~i 145 (346)
+.+++|.+++|+|++||||||+.+.|.+.+. |..| .+.+++..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECChHH
Confidence 5568899999999999999999999999998 7888 888886554
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=79.04 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=48.7
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.+++++.|+.. -++++|+ ++++++|+|++||||||++..|++.+. +..++|.+.+.|+.
T Consensus 79 ~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 79 YEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECCSS
T ss_pred HHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEeecccc
Confidence 45677777542 1238887 899999999999999999999999999 88899999887764
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.77 E-value=5.8e-06 Score=83.88 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=40.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECce
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 143 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~ 143 (346)
++++++++ +|+.++|+||||||||||+++|++.+. +..|.|.+.|.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 45588888 899999999999999999999999998 77788877663
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.7e-06 Score=80.59 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=38.7
Q ss_pred EeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh--hccCCCCCCCCceEEECc
Q 019066 73 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNS 142 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g--l~~~~~~~p~~G~I~~~g 142 (346)
++++...|+......+ |++++++++ .++|+|++|||||||++.|.| +++ +.+|.+.-..
T Consensus 11 l~~~~~~~~~~~~~~~---l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-----~~~~~vT~~p 71 (360)
T 3t34_A 11 IQRACTALGDHGDSSA---LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-----RGSGIVTRRP 71 (360)
T ss_dssp TTTTTTSCSSCCSSCC---C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-----CCSSSCCCSC
T ss_pred HHHHHHhhCccccccc---cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-----CCCCcccCcc
Confidence 3455555653221124 666999998 999999999999999999999 666 5556554333
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=3.8e-05 Score=67.75 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.6
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+.+.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 34466777776 99999999999999999997544
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.71 E-value=9.9e-06 Score=75.99 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=48.8
Q ss_pred EeeeEEEeCCCCceecccCcee-eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 73 AKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 73 ~~~l~~~y~~~~~~~~l~~L~~-isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
.+++.+.|++. .++ ++|+++ |++++++|++|+||||++..|++.+. +..++|.+.+.|..
T Consensus 77 ~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 77 YDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVGADVY 137 (297)
T ss_dssp HHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEECCCS
T ss_pred HHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEecCCC
Confidence 45666667542 334 778876 99999999999999999999999998 88889998887764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=8e-06 Score=71.09 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=36.9
Q ss_pred EEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh----ccCCCCCCCCceEEECcee
Q 019066 77 ILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV----FENDKFASERAQVTYNSSV 144 (346)
Q Consensus 77 ~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl----~~~~~~~p~~G~I~~~g~~ 144 (346)
++.|++-.. + ++++||..++. .++|+|++|||||||++.+.+- +.+.. .++.+.+.++|..
T Consensus 6 ~~~~~~~~~--~---l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~-~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSGFSS--V---LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTL-HPTSEELTIAGMT 70 (198)
T ss_dssp -------CH--H---HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCC-CCSCEEEEETTEE
T ss_pred HHHHHHHHH--H---HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCC-CceeEEEEECCEE
Confidence 345655433 4 66699998887 5899999999999999999862 21011 1345666666543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=3.2e-05 Score=66.70 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.8
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++++++.++. .++|+|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 56699998887 789999999999999999987
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.65 E-value=3.4e-05 Score=68.69 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=32.8
Q ss_pred ceee-eEEecCCcEEEEEcCCCCCHHHHHHHH-hhhccCCCCCCCCceEEECc
Q 019066 92 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRI-SKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 92 L~~i-sl~i~~Ge~iaIvGpnGsGKSTLl~~L-~gl~~~~~~~p~~G~I~~~g 142 (346)
|+.+ .--+++|++++|+||||||||||+..+ ....+ ...+.++++.
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----~~~~v~~~~~ 59 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK-----MGEPGIYVAL 59 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEES
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEc
Confidence 4445 557899999999999999999995544 55555 4444455544
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.63 E-value=3.8e-05 Score=65.19 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.62 E-value=2.8e-05 Score=66.86 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=34.3
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceE-EECce
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-TYNSS 143 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I-~~~g~ 143 (346)
+...+|.++.|+|++||||||+.+.|+..+. +..+.+ .+++.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~~~~~d 50 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVEVLDGD 50 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEeeHH
Confidence 4456899999999999999999999999988 666665 45443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=3e-05 Score=66.85 Aligned_cols=31 Identities=29% Similarity=0.576 Sum_probs=26.8
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+||+..+|..++|+|++||||||+.+.|+..
T Consensus 3 ~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999999876
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.54 E-value=2.8e-05 Score=78.07 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=39.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++++++.+++| +.|+||+|||||||+++|++... .+.+.+++.++.
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~ 101 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFV 101 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGT
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHH
Confidence 56699999999 99999999999999999999875 477888887653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.54 E-value=4e-05 Score=67.16 Aligned_cols=30 Identities=27% Similarity=0.659 Sum_probs=26.3
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...+|.+++|+||||||||||.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346889999999999999999999998774
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=4.5e-05 Score=66.62 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++|+|++||||||+.++|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00013 Score=70.28 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=28.2
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++..+++.+| +.+|+|||||||||++.+|.=
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 55688888886 999999999999999999974
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=9.1e-06 Score=78.22 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=34.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.++|++..|+... + +++++|.| +|+|++|+|||||++.|.+...
T Consensus 17 ~v~~~~l~~~~~~k~---~---~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQVHRKS---V---KKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHHHTHH---H---HHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHhCCee---e---cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 588999998886533 3 55588877 9999999999999999987654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=8.5e-05 Score=73.10 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccC----CC---CCCCCceEEECceeC
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFEN----DK---FASERAQVTYNSSVG 145 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~----~~---~~p~~G~I~~~g~~i 145 (346)
.++|+|+||||||||+|.|.|.... .+ ..+..|.+.++|+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 7999999999999999999997530 00 014568899998764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.43 E-value=8.4e-05 Score=63.15 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.|.+-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.41 E-value=7.1e-05 Score=65.12 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00012 Score=61.29 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00025 Score=67.65 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=31.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|+.+.--+++|+.+.|.|++|+|||||+..++....
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 555665789999999999999999999998887665
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=63.43 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
.+++|+|+||||||||++.|.+.+.... ..-|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCCc
Confidence 5899999999999999999999876111 123666666543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=9.7e-05 Score=71.93 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=33.1
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccC------CCCCCCCceEEECce
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFEN------DKFASERAQVTYNSS 143 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~------~~~~p~~G~I~~~g~ 143 (346)
.+..|..++|||++|+|||||+|+|.|.... ....|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999987210 001167788887664
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.34 E-value=7.8e-06 Score=77.46 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=36.8
Q ss_pred ceeeeEEecCCcE--EEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 92 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 92 L~~isl~i~~Ge~--iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
++.++..|+.|++ +.|.||+|+||||+++++++.+. +..+.+.+
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~-----~~~~~~~~ 79 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY-----GKNYSNMV 79 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH-----TTSHHHHE
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc-----CCCccceE
Confidence 5558899999998 99999999999999999999886 55554333
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.31 E-value=7.2e-05 Score=69.99 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++.+++|+|++|||||||+|.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999864
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00013 Score=63.46 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+++|+|++||||||+.+.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00016 Score=65.35 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=30.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
++++++.+++| +.|+||+|+|||||+++|++.+. .. -+.+++.++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~-----~~--~~~i~~~~~ 81 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK-----VP--FFTISGSDF 81 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT-----CC--EEEECSCSS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC-----CC--EEEEeHHHH
Confidence 34456666666 88999999999999999999875 22 355655443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=5.3e-05 Score=72.72 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=32.4
Q ss_pred ceeeeEEecCCcE--EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~--iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4558899999999 99999999999999999998764
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00032 Score=73.95 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=25.8
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+..|+.+.|+||+||||||++.++.....
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 356789999999999999999999876654
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00016 Score=61.77 Aligned_cols=27 Identities=22% Similarity=0.613 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00047 Score=58.97 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc----eEEECcee
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA----QVTYNSSV 144 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G----~I~~~g~~ 144 (346)
.++|+|++|||||||++.+.+-.-.....|+.+ .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 589999999999999976655321111226655 44555543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=61.68 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++|||||||++.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999653
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00022 Score=59.72 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|++||||||+.+.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987764
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00024 Score=63.55 Aligned_cols=29 Identities=41% Similarity=0.565 Sum_probs=24.8
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34688999999999999999999999754
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00022 Score=64.78 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=33.7
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
...++.++.|+|++||||||+.+.|...+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-------TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-------CCcEEEecHHH
Confidence 456788999999999999999999998775 25677777554
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00035 Score=59.11 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998775
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00014 Score=63.52 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00032 Score=69.05 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=36.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++.+++++|++||||||++..|+..+. +..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecCcc
Confidence 578999999999999999999999998 88888988766653
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00034 Score=63.20 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00042 Score=61.94 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++|+|||||+|.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 589999999999999999999765
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00042 Score=66.27 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=30.1
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
-+++|+++.|.||+|||||||+..++.... ...|.+.|
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~-----~~g~~vly 94 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ-----AAGGIAAF 94 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH-----hCCCeEEE
Confidence 478999999999999999999888876654 34455544
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00043 Score=58.95 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|.+++|.|++||||||+.+.|...+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999988664
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00041 Score=57.83 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 019066 104 SLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L 122 (346)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00045 Score=59.48 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00048 Score=58.90 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++.++.|+|++||||||+.+.|..-+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999987553
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00046 Score=64.85 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=29.7
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
|+.+.--+++|+++.|.|++|+|||||+..++.-.
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55566669999999999999999999988887544
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.001 Score=57.44 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997654
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00062 Score=59.85 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
.+-+++|+|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0012 Score=54.56 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00038 Score=59.22 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+.++.|+|++||||||+.+.|+..+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999986553
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00061 Score=58.04 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+..+.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00057 Score=59.59 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|+||||||||||++.|..-++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999876553
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00052 Score=58.21 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988764
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00071 Score=65.23 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
.+..++|+|++|||||||++.|...+. ...+.|.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEEe
Confidence 567899999999999999999999887 6777777753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0018 Score=53.26 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998654
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00087 Score=64.48 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc------CCCCCCCCceEEECc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE------NDKFASERAQVTYNS 142 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~------~~~~~p~~G~I~~~g 142 (346)
|-.++|||.+|+|||||+|.|.+-.. .....|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 001126778888766
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0016 Score=56.67 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999887643
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0019 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998765
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00061 Score=61.96 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+||+|||||||.+.|+.-+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999988654
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00075 Score=58.29 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+|-+++|.|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998765
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00071 Score=58.29 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999874
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00066 Score=63.12 Aligned_cols=42 Identities=19% Similarity=0.435 Sum_probs=32.8
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++.+.++..+.|.||+|||||||+++|++... .+-+.+++.+
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-------~~~i~v~~~~ 84 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISIKGPE 84 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-------CEEEEECHHH
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-------CCEEEEEhHH
Confidence 34567888999999999999999999998764 3455665543
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.002 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.002 Score=55.56 Aligned_cols=23 Identities=52% Similarity=0.663 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00085 Score=57.02 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00067 Score=62.01 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++|||||||+|.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00086 Score=57.59 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3799999999999999999999876
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00078 Score=56.75 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++.|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00083 Score=57.52 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677999999999999999999987654
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0009 Score=57.91 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.+++|.|+.||||||+.+.|..-+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998876
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00093 Score=58.03 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|.+++|.|+.||||||+.+.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999987654
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0025 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998744
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00092 Score=57.79 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988664
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00099 Score=56.71 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998864
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0012 Score=60.82 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEE
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 139 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~ 139 (346)
..+.|+||+|+||||++++|++.+. ...+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~~ 79 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-----DTEEAMI 79 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-----CCCcceE
Confidence 5899999999999999999999987 6656443
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=57.76 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.3
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+|-+++|.|+.||||||+.+.|...+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999997664
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0032 Score=52.77 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0022 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.001 Score=56.61 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0012 Score=56.32 Aligned_cols=26 Identities=23% Similarity=0.509 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.+++|+|++||||||+.+.|+.-+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999986553
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=54.51 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0021 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|||||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0022 Score=60.38 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=28.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++..+++ .|.-++|+|+||+|||||...|.+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 44588888 788999999999999999999887
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0011 Score=61.57 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=28.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g 142 (346)
..+..+.|.||+||||||+.+.|..-++ .+.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~-------~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ-------GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT-------TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Confidence 4567899999999999999999987553 24566654
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=53.91 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0012 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998653
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0013 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999987643
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0025 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998643
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.003 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=54.16 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|||||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0011 Score=54.72 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999987543
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0039 Score=53.74 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
=.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0038 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0015 Score=54.59 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988754
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0011 Score=56.15 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.++.|.|++||||||+.+.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999987654
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0011 Score=56.89 Aligned_cols=30 Identities=27% Similarity=0.564 Sum_probs=25.6
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++.+.+++|+|+.||||||+.+.|...+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345677999999999999999999987664
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0014 Score=54.06 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0013 Score=60.54 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|||||||+|.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999998644
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0042 Score=52.55 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998754
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=54.30 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0018 Score=53.99 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+.-.++|+|++|||||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999874
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=55.82 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
--.++|+|+.|+|||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999875
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=55.51 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998764
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0017 Score=57.10 Aligned_cols=28 Identities=29% Similarity=0.660 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|-+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999988664
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=54.65 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|||||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0011 Score=59.15 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=23.1
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
.+..|+.++|+||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 356789999999999999998887654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00077 Score=67.16 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=29.3
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 45578888888 88999999999999999998664
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0036 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.-.++|+|+.|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=54.95 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0034 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998644
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0018 Score=53.28 Aligned_cols=22 Identities=50% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=57.44 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++.+++|+|+.||||||+.+.|+.-+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999986553
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=56.64 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999976553
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0019 Score=54.18 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0028 Score=54.77 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+.|.||+|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998876
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.002 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999763
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0017 Score=54.87 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47999999999999999998753
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0017 Score=54.44 Aligned_cols=25 Identities=12% Similarity=0.569 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|+|++||||||+.+.|...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0032 Score=59.79 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=26.0
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998875
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0019 Score=54.96 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|.|+.||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0022 Score=55.50 Aligned_cols=28 Identities=25% Similarity=0.555 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+-+++|+|+.||||||+.+.|...+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999987664
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0021 Score=52.86 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999764
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0024 Score=56.00 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998776
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0053 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0016 Score=59.59 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||+|.|.+-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=53.60 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0018 Score=56.99 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987664
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0022 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998643
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.004 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998643
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|.|++||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988654
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0024 Score=55.18 Aligned_cols=28 Identities=18% Similarity=0.523 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
....+++|.|+.||||||+.+.|+.-+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3446899999999999999999986553
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0044 Score=52.97 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0014 Score=55.14 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+.-.++|+|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999874
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0023 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0023 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|+.|+|||||++.+.+-+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999999999998765
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0019 Score=54.94 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987654
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0023 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998744
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.002 Score=58.66 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|||||||+|.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0038 Score=58.70 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=26.2
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-+++|+++.|.||+|||||||+..++.-.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 47899999999999999999999888754
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0022 Score=56.15 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999976553
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0023 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0021 Score=54.56 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+++|+|+.||||||+.+.|...+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987653
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0042 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0025 Score=53.30 Aligned_cols=23 Identities=52% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0023 Score=60.25 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=25.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999886
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0024 Score=57.66 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-+++|.|++||||||+.+.|...+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999987554
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=59.80 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+++|+|++|+|||||+|.|.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0048 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0044 Score=53.27 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
=.++|+|+.|+|||||++.+.+-..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC
Confidence 4689999999999999999987543
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0023 Score=57.71 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|++|||||||++.|.+-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0025 Score=53.66 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0047 Score=51.71 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0025 Score=55.57 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-+++|+|+.||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998764
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0026 Score=55.34 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.|.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0047 Score=52.46 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999874
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0061 Score=53.41 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0028 Score=53.83 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0025 Score=59.51 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++| +++|+|+.|+|||||+|.|.|-.
T Consensus 9 ~~g-~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVG-YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCC-EEEEECCCCCcHHHHHHHHhCCC
Confidence 344 89999999999999999999853
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0022 Score=61.15 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
..-.++|+|++|+|||||++.|.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44589999999999999999998864
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0028 Score=53.79 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0027 Score=54.17 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=53.49 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++.-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578999999999999999998754
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0016 Score=60.54 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++-+++|.|++||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999988654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0057 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0032 Score=53.47 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|||||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0021 Score=63.76 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=28.2
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.+-+|+.++|+|++|+|||||++.|..-..
T Consensus 146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 6677999999999999999999999988765
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0028 Score=58.15 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|.+|||||||+|.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0049 Score=58.27 Aligned_cols=27 Identities=19% Similarity=0.472 Sum_probs=24.5
Q ss_pred CCc--EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTT--SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge--~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+. .+.|.||+|+|||||++.+.+.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 445 899999999999999999999887
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.003 Score=57.49 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|||||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0034 Score=56.51 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++-+++|+||+||||||+.+.|+.-+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 556899999999999999999986553
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0034 Score=57.06 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 466899999999999999999998754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0032 Score=54.09 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0033 Score=57.69 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++..+.|.||+|+|||||+++|++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999998764
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0027 Score=61.13 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|||++|||||||+|.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999874
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0032 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0015 Score=56.96 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|++|||||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998864
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0081 Score=51.87 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0033 Score=54.85 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.++|+|+.|||||||++.|.+-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999987654
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0026 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998765
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0032 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.03 E-value=0.004 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0063 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0035 Score=53.06 Aligned_cols=23 Identities=17% Similarity=0.520 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
.-.++|+|+.|||||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0033 Score=58.01 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
.-+++|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0033 Score=58.23 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|||||||+|.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0032 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0038 Score=53.09 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0042 Score=51.97 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3446789999999999999999988775
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0039 Score=53.33 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999874
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0032 Score=53.79 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0074 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999988764
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0037 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.709 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987553
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0038 Score=53.55 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
--.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998643
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0032 Score=53.12 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0038 Score=54.87 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|-++.|+|+.||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987664
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0035 Score=58.44 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..+.|.||+|+|||||++.|+..+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 45799999999999999999999875
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0039 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0037 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0039 Score=56.60 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.|.+-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0039 Score=56.81 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++++|++|+|||||+|.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0033 Score=52.57 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0041 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|+.||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999999999999999987553
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0042 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+-+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999988653
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0046 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998643
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0044 Score=56.71 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.++|+|.+|+|||||+|.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999998664
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0045 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0045 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0048 Score=58.75 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999988664
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0052 Score=55.92 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=24.7
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.++..+.|.||+|+|||||++.|+..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34556799999999999999999988765
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0031 Score=52.97 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=9.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0044 Score=56.77 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|..|+|||||+|.|.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0057 Score=58.15 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.++.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 556899999999999999999987664
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0052 Score=52.24 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0051 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999999888544
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0046 Score=52.95 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999999864
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0062 Score=54.10 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+..+.|+|+.||||||+.+.|+.-+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987664
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0054 Score=56.41 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0028 Score=62.30 Aligned_cols=43 Identities=16% Similarity=0.374 Sum_probs=32.6
Q ss_pred EEecCC--cEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 97 YDVPKT--TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 97 l~i~~G--e~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
|.+.++ .+++|+|++|+||||++..|++.+. ....+|.+-..|
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~-----~~G~kVllv~~D 136 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ-----KRGLKPALIAAD 136 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH-----HHHCCEEEECCS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEecc
Confidence 444434 5999999999999999999999887 444456654444
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0056 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.++|+|+.|||||||++.+..-..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999987643
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0061 Score=54.01 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-+|-+++|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999998876
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.006 Score=55.02 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998876
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0029 Score=54.95 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|||||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998853
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0054 Score=51.29 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
....+.|.||+|+|||||++.+...+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999998775
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0048 Score=60.80 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||+|.|.|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998854
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0091 Score=52.65 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=26.4
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
++..-+++ .|..++|+||+|||||||...|+.-
T Consensus 25 lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 25 MHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34466665 5778999999999999999988753
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0064 Score=53.56 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0074 Score=53.94 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...-+.|.||+|+|||||++.|+..+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 334588999999999999999998664
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0067 Score=52.31 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999999764
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0053 Score=55.04 Aligned_cols=28 Identities=14% Similarity=0.327 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|-++.|.|+.||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999988775
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0045 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+.-.++|+|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 344699999999999999999854
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.011 Score=52.62 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|.++.|-|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999999887
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.007 Score=57.18 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..++|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999988664
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0068 Score=59.09 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=24.7
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+.=.+..++.|+|++||||||+.+.|..-+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334567899999999999999999987543
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.007 Score=52.30 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
=.++|+|+.|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999988753
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0077 Score=56.75 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.+++|+||+|||||||...|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 35789999999999999999986553
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0021 Score=58.04 Aligned_cols=31 Identities=32% Similarity=0.608 Sum_probs=25.3
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+..+.| +.|.||+|+|||||+++|+....
T Consensus 39 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 39 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 44555566 78999999999999999998664
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.014 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998764
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0078 Score=53.35 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.++.|-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998886
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0032 Score=53.89 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=4.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998875
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0086 Score=53.40 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.+++|.|+.||||||+++.|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998774
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0079 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|.||+|+|||||++.+...+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999988775
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0078 Score=53.60 Aligned_cols=32 Identities=25% Similarity=0.561 Sum_probs=26.3
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+-.+++..++.|+||.||||+|..+.|+.-|.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 34456777899999999999999999987664
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.01 Score=56.86 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.9
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|.++.|.|++|||||||...++.-..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988876554
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0089 Score=55.82 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=25.1
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-+++|+++.|.||+|||||||+..++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999888753
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.009 Score=53.42 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|-+++|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999998776
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0066 Score=54.97 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++-+++|.|+.||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5778999999999999999999987764
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.012 Score=57.93 Aligned_cols=39 Identities=33% Similarity=0.521 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
++.+++++|++||||||++..|+..+. ...-+|.+-..|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~-----~~G~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ-----KRGYKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH-----HCCCeEEEEeCC
Confidence 467999999999999999999999887 444455543333
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.011 Score=54.65 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+-.++|+|.+|+|||||+|.|.|-..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34799999999999999999998653
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.018 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|||.+|+|||||++.+..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 589999999999999998753
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.012 Score=48.40 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+.-+.|.||+|+|||++.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3456789999999999999999988654
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.014 Score=55.58 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999998875
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.013 Score=51.61 Aligned_cols=25 Identities=32% Similarity=0.660 Sum_probs=22.4
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
+++|+++.|.|++|+|||||+--++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7999999999999999999976543
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...++|+||+|||||||...|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35789999999999999999987654
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.013 Score=53.84 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++..+.|.||+|+|||||++.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455799999999999999999998775
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.01 Score=58.27 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..+.|.||+|+|||||+++|++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998774
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.013 Score=51.63 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.|+||.||||+|..+.|+.-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999997765
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=55.24 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=25.8
Q ss_pred eeEEecCC--cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 95 SDYDVPKT--TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 95 isl~i~~G--e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.-.+..| ..+.|.||+|+||||+++.+++.+.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44444444 3499999999999999999998764
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.018 Score=49.57 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCCHHHHH-HHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLV-NRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl-~~L~gl~~ 127 (346)
+|.++.|.||.||||||++ +++..+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999997 55555443
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.012 Score=56.37 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++..++++|.+|+|||||+|.|.+-.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~ 186 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEA 186 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhc
Confidence 56689999999999999999999874
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.96 E-value=0.0094 Score=51.94 Aligned_cols=23 Identities=39% Similarity=0.839 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHH-Hhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNR-ISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~-L~gl~ 126 (346)
.++|+|+.|||||||++. +.+-+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999998 55554
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.014 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|.||.|+|||||++.+...+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999988664
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.011 Score=57.72 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||+|.|.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998854
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.014 Score=54.31 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998765
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.024 Score=53.39 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|..+.|.||+|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466899999999999999999999886
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.0034 Score=53.92 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|||||||++.+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998763
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.013 Score=56.24 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++..++++|.+|+|||||+|.|.+-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999875
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.013 Score=54.98 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+..+.|.||+|+|||||++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4556899999999999999999998775
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.011 Score=58.55 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+.|-.++|+|++|+|||||+|.|.+-.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 345569999999999999999999864
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.0053 Score=52.81 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~g 124 (346)
-.++|+|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4689999999999999988875
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.016 Score=56.30 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999987664
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.017 Score=54.92 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=25.3
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+.++++---.++|+|.++||||||++.|.+-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 5555555556999999999999999998864
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.011 Score=56.16 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.017 Score=54.84 Aligned_cols=27 Identities=37% Similarity=0.819 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++..+.|.||+|+||||+.++|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345689999999999999999998764
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.015 Score=56.35 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|.+++|||||+|.|.+-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999998854
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.026 Score=48.62 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.6
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
.-+++ .|.-+.|.|+||+|||||.-.|..
T Consensus 10 s~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 55554 677899999999999999887754
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.019 Score=50.79 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.8
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++...+.|.||.|+||||+..+|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 66666799999999999999999999876
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.019 Score=52.45 Aligned_cols=26 Identities=35% Similarity=0.788 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..+.|.||+|+|||||++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998875
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.021 Score=53.58 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.+..-+.|.||.|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 344568999999999999999999876
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.024 Score=49.79 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|.+|+|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998775
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.023 Score=52.49 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.+.|.||+|+|||+|.++|+.-+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578889999999999999998774
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.02 Score=51.76 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+...+.|.||+|+|||||++.|+....
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344689999999999999999988654
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.015 Score=57.33 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=26.2
Q ss_pred eeEEecCCc--EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 95 SDYDVPKTT--SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 95 isl~i~~Ge--~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.-.|..|. .+.|.||+|+|||||+++|+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 334444554 489999999999999999998875
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.019 Score=58.15 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|+|..|+|||||+|.|.|-.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999854
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.35 E-value=0.027 Score=54.06 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.6
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+++|.++.|.||.|||||||+..++.-.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 6899999999999999999987776544
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.026 Score=52.66 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988653
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.023 Score=57.03 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|-++.|+|.+||||||+.+.|+.-+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5778999999999999999999999886
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.019 Score=58.55 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-+++|+|+.|+|||||+|.|.|-.
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 578999999999999999999864
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.21 E-value=0.028 Score=52.48 Aligned_cols=27 Identities=37% Similarity=0.630 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..-+.|.||+|+|||+|++.|+....
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 344689999999999999999987654
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.027 Score=50.58 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.+||+|+.||||||+.+.|+.-+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987654
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.028 Score=53.31 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+...+.|.||+|+|||||++.|+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456799999999999999999987654
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.037 Score=49.72 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+..+.|.||+|+|||+|++.|.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 345789999999999999999998765
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.026 Score=55.33 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=30.0
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444554589999999999999999999988887654
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.026 Score=55.16 Aligned_cols=23 Identities=43% Similarity=0.457 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|.+|+|||||+|.|.|-.
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.026 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++++|+.|+|||||++.|.+...
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 689999999999999999998543
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.028 Score=57.14 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|-++.|.|.+||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999998775
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.027 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|||.+++|||||+|.|.|-
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.029 Score=53.42 Aligned_cols=26 Identities=38% Similarity=0.805 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...+.|.||+|+|||||.+.|+..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999998774
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.028 Score=58.44 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++=.++|+|+.|+|||||+|.|.|-.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456679999999999999999999853
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.031 Score=52.66 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..+.|.||.|+|||||++.+...+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 346 | ||||
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 6e-04 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.001 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 0.002 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 0.004 |
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 6e-04
Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 23/170 (13%)
Query: 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYT 155
D DV T +L+IG G GKSSL+ R F +D F E A + ++ +
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLR----FTDDTFDPELAATIGV------DFKVKTIS 50
Query: 156 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 215
+ +++DT + + + R + VI D + ++
Sbjct: 51 VDGNKAKLAIWDTAGQERFRT----LTPSYY----RGAQGVILVYDVTRRDTFVKLDNWL 102
Query: 216 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL 265
E R + L K + + +V++ A + ++
Sbjct: 103 NELETYCTRNDIVNM-----LVGNKIDKENREVDRNEGLKFARKHSMLFI 147
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (86), Expect = 0.001
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 95 SDYD-VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE 153
S+YD + K LLLIG G GKS L+ R F +D + ++ Y S++G + ++
Sbjct: 1 SEYDYLFK---LLLIGNSGVGKSCLLLR----FSDDTYTND-----YISTIGV-DFKIKT 47
Query: 154 YTIPRGSNSFSLYDT 168
+ + ++DT
Sbjct: 48 VELDGKTVKLQIWDT 62
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 36.7 bits (84), Expect = 0.002
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 16/142 (11%)
Query: 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 159
+ ++L++G G GKSS VN I + S + R
Sbjct: 30 VNSLTILVMGKGGVGKSSTVNSIIG--------ERVVSI---SPFQSEGPRPVMVSRSRA 78
Query: 160 SNSFSLYDTRSLSDDASDN---INMIKLWIMEGVRHGELVIRRSDSSSLRN--RMRCKAH 214
+ ++ DT L + N +N+IK ++++ L + R D+ + N ++ KA
Sbjct: 79 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAI 138
Query: 215 KIGCEPSVIRKVNFVIFVVDGL 236
+ K +
Sbjct: 139 TDSFGKGIWNKAIVALTHAQFS 160
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 36.1 bits (83), Expect = 0.004
Identities = 36/224 (16%), Positives = 79/224 (35%), Gaps = 20/224 (8%)
Query: 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYT 155
+V ++L+GP G GK++ + I+ + E + ++
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 156 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 215
I S++LY ++ D+ + + + K+ E + V + L NR
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK------ 136
Query: 216 IGCEPSVI-----RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 270
P + ++V +V V E S+++ + + L +
Sbjct: 137 ----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM--RAELKKLQRQLG 190
Query: 271 KPVVVVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPES 312
+ VTH + +++ DR G L + +++D P +
Sbjct: 191 VTTIYVTHDQVEAMTMGDRI-AVMNRGVLQQVGSPDEVYDKPAN 233
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.44 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.22 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.8 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.56 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.84 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.69 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.65 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.6 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.59 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.5 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.49 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.48 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.42 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.39 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.34 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.3 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.3 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.27 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.24 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.23 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.22 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.21 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.19 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.16 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.15 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.12 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.12 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.1 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 97.09 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.07 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.04 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 97.0 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 97.0 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.99 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.96 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.94 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.94 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.92 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.91 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.91 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.91 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.9 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.9 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.87 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.86 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.86 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.8 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.79 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.78 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.77 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.75 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.73 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.73 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.73 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.66 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.65 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.65 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.63 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.62 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.59 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.59 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.57 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.53 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.53 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.49 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.47 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.46 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.45 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 96.44 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.44 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.42 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.42 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.41 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.4 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.37 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.35 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.35 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.35 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.33 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.33 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.33 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.29 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.29 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 96.28 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.26 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.22 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.19 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.13 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.13 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.13 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.12 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.12 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 96.11 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.1 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.09 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.08 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.06 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.06 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.04 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.04 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.03 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.03 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.03 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.03 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.02 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.02 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.0 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.95 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.92 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.88 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.86 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.86 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.86 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.86 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.85 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.84 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.83 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.83 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.83 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.82 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.81 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.81 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.78 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.77 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.74 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.74 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.74 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.72 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.71 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.7 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.68 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.68 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.67 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.67 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.66 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.66 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.66 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.65 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.62 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.6 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.58 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.57 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.57 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.53 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.51 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.51 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.51 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.5 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.49 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.48 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.43 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.4 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.39 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.36 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.35 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.33 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.33 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.31 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.26 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.24 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.22 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.2 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.19 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.19 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.15 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.14 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.12 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.05 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.04 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 95.04 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 95.01 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.0 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.99 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.99 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.92 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.84 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.81 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.7 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.66 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.63 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.61 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.58 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.57 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.55 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.53 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.49 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 94.46 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.43 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 94.4 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.32 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.17 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.03 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 93.81 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.74 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 93.73 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.73 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.65 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.56 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.53 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.5 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.28 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.26 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.25 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 93.1 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.08 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.76 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.42 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.26 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.24 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.23 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.03 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 91.82 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 91.63 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.47 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.36 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 91.3 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 90.67 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 90.57 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 90.38 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 90.37 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 90.36 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.98 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 89.42 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.93 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.87 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 88.67 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 88.19 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 88.1 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.85 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.65 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 87.07 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 86.96 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 86.67 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 86.52 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 86.29 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.89 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 85.64 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.15 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 85.03 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 84.98 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 84.59 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 84.1 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 83.85 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 83.22 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 82.28 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 82.26 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.88 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 81.54 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.6e-53 Score=385.53 Aligned_cols=210 Identities=12% Similarity=0.150 Sum_probs=174.7
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|++. .| |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++....
T Consensus 3 ~i~v~nl~k~yg~~---~a---l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~-----p~sG~I~~~g~~i~~~~ 71 (240)
T d1g2912 3 GVRLVDVWKVFGEV---TA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADPE 71 (240)
T ss_dssp EEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEGG
T ss_pred cEEEEeEEEEECCE---EE---EcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEEecccc
Confidence 58999999999763 35 666999999999999999999999999999999999 99999999999985221
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
........++.+++++|++..+..+ +|.+|+.++...+ ..+..+.++++.++++.+++.+
T Consensus 72 ~~~~~~~~~r~ig~v~Q~~~L~~~l----------tV~eni~~~~~~~-~~~~~e~~~~v~~~l~~~~l~~--------- 131 (240)
T d1g2912 72 KGIFVPPKDRDIAMVFQSYALYPHM----------TVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTE--------- 131 (240)
T ss_dssp GTEECCGGGSSEEEECSCCCCCTTS----------CHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGG---------
T ss_pred hhhhcccccccceecccchhhcchh----------hhhHhhhhhHHHc-CCCHHHHHHHHHHHHHHcCChh---------
Confidence 1122223355677887777666544 3444444443322 3456788899999999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
..+++|++|||||||||+||||| ||||++||+ |+|+|+||| +++
T Consensus 132 --------~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~ 203 (240)
T d1g2912 132 --------LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA 203 (240)
T ss_dssp --------GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH
T ss_pred --------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHH
Confidence 57999999999999999999999 999999985 999999999 678
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
.++||||++ |++|+|++.|++++++.+|.+++++.|+
T Consensus 204 ~~~~drv~v-m~~G~iv~~G~~~el~~~P~~~~~~~fi 240 (240)
T d1g2912 204 MTMGDRIAV-MNRGVLQQVGSPDEVYDKPANTFVAGFI 240 (240)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHHhC
Confidence 999999975 9999999999999999999999988763
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.5e-53 Score=385.88 Aligned_cols=207 Identities=15% Similarity=0.174 Sum_probs=170.8
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+..|+++||+|+|++. .| |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 4 M~~I~v~nlsk~yg~~---~a---l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~~ 72 (239)
T d1v43a3 4 MVEVKLENLTKRFGNF---TA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 72 (239)
T ss_dssp CCCEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred cCeEEEEEEEEEECCE---EE---EcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCCCEEEEcceeccc
Confidence 3459999999999763 35 677999999999999999999999999999999999 999999999999862
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
....++.++|++|++..+..+ +|.+|+.++.... ..++.+.++++.++++.++|.+
T Consensus 73 ------~~~~~r~ig~v~Q~~~l~~~l----------tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~------- 128 (239)
T d1v43a3 73 ------LPPKDRNISMVFQSYAVWPHM----------TVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEE------- 128 (239)
T ss_dssp ------SCGGGGTEEEEEC------CC----------CHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGG-------
T ss_pred ------CCcccceEEEEeechhhcccc----------hHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChh-------
Confidence 111234566666665444332 5666666654433 3456788899999999999988
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--G 279 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~ 279 (346)
+++++|++|||||||||+||||| ||||++||+ |+|+|+||| +
T Consensus 129 ----------~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~ 198 (239)
T d1v43a3 129 ----------LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 198 (239)
T ss_dssp ----------GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred ----------hhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 67999999999999999999999 999999995 999999999 6
Q ss_pred hhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
++.++||||++ |++|+|+++|++++++.+|.+++++.|+.
T Consensus 199 ~a~~~~dri~v-m~~G~iv~~G~~~el~~~P~~~~~~~~lg 238 (239)
T d1v43a3 199 EAMTMGDRIAV-MNRGQLLQIGSPTEVYLRPNSVFVATFIG 238 (239)
T ss_dssp HHHHHCSEEEE-EETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHHhhC
Confidence 78999999975 99999999999999999999999887753
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.3e-52 Score=382.53 Aligned_cols=211 Identities=14% Similarity=0.225 Sum_probs=175.5
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|+.+. +.| |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++....
T Consensus 3 ~i~v~nlsk~y~~g~-~~a---L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~-----p~~G~I~~~g~~i~~~~ 73 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGK-VVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLVASNG 73 (242)
T ss_dssp CEEEEEEEEEEGGGT-EEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEEEETT
T ss_pred EEEEEeEEEEECCCC-EEE---EeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC-----CCCceEEECCEEeecCc
Confidence 589999999996544 346 666999999999999999999999999999999999 99999999999985211
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
.......+++++|+||++.++..+ +|.+||.+++... ..++.+.++++.++++.++|.+
T Consensus 74 -~~~~~~~rr~ig~vfQ~~~L~p~l----------tv~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~--------- 132 (242)
T d1oxxk2 74 -KLIVPPEDRKIGMVFQTWALYPNL----------TAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHH--------- 132 (242)
T ss_dssp -EESSCGGGSCEEEEETTSCCCTTS----------CHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGG---------
T ss_pred -hhhcchhhccceEEeccccccccc----------cHHHHhhhhhHhh-cCCHHHHHHHHHHHHhhcChHh---------
Confidence 111111244566666665444322 6667777766533 3556788899999999999987
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhh
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~ 281 (346)
+++++|++|||||||||+||||| ||||++||+ |+|+|+||| +.+
T Consensus 133 --------~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~ 204 (242)
T d1oxxk2 133 --------VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI 204 (242)
T ss_dssp --------GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH
T ss_pred --------hhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHH
Confidence 57999999999999999999999 999999995 999999999 578
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
.++||||++ |++|+|++.|++++++.+|.+++++.|+
T Consensus 205 ~~~~dri~v-m~~G~iv~~g~~~el~~~P~~~~~~~fl 241 (242)
T d1oxxk2 205 FAIADRVGV-LVKGKLVQVGKPEDLYDNPVSIQVASLI 241 (242)
T ss_dssp HHHCSEEEE-EETTEEEEEECHHHHHHSCSSHHHHHHH
T ss_pred HHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 899999975 9999999999999999999999988876
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-52 Score=381.69 Aligned_cols=210 Identities=14% Similarity=0.157 Sum_probs=172.7
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
||+++||+++|+.+. .+.| |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 1 mi~v~nlsk~y~~~~~~~~a---l~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~-----p~sG~I~~~g~~i~~~ 72 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQELTTL 72 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEE---EEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEECTT
T ss_pred CEEEEeEEEEeCCCCeeEEE---eeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-----ccCCceEEcCeEeeeC
Confidence 689999999997653 2346 666999999999999999999999999999999999 9999999999998622
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
...+...+ |+.++|+||++..+..+ +|.+|+.+++... ..+.++.++++.++|+.+||.+
T Consensus 73 ~~~~~~~~-rr~ig~VfQ~~~l~~~~----------tv~eni~~~l~~~-~~~~~~~~~~v~~~L~~vgL~~-------- 132 (240)
T d3dhwc1 73 SESELTKA-RRQIGMIFQHFNLLSSR----------TVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGD-------- 132 (240)
T ss_dssp CHHHHHHH-HHHEEECCSSCCCCTTS----------BHHHHHHHHHHTT-TCCTTHHHHHHHHHHHHHSTTT--------
T ss_pred Chhhhhhh-hccccccccccccCCCc----------cHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCch--------
Confidence 21111111 23566666665444333 5555555554433 2456778899999999999988
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
.++++|++|||||||||+||||| ||||++||+ |+|+|+||| +.
T Consensus 133 ---------~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~ 203 (240)
T d3dhwc1 133 ---------KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDV 203 (240)
T ss_dssp ---------TTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHH
T ss_pred ---------hhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHH
Confidence 57999999999999999999999 999999995 999999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPEN 317 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~ 317 (346)
+..+||||++ |++|+|++.|++++++.+|.+++++.
T Consensus 204 ~~~~~dri~v-l~~G~iv~~G~~~ei~~~P~~~~t~~ 239 (240)
T d3dhwc1 204 VKRICDCVAV-ISNGELIEQDTVSEVFSHPKTPLAQK 239 (240)
T ss_dssp HHHHCSEEEE-EETTEEEEEEETTTTTCSSCCTTTTC
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhCCCChHHcC
Confidence 8899999965 99999999999999999999999864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-53 Score=382.50 Aligned_cols=203 Identities=12% Similarity=0.166 Sum_probs=141.6
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+++||+|+|++. .+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.
T Consensus 1 Iev~nv~k~yg~~---~~---l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~-----p~sG~I~i~g~~i~---- 65 (232)
T d2awna2 1 VQLQNVTKAWGEV---VV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMN---- 65 (232)
T ss_dssp EEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEESSSCCT----
T ss_pred CEEEEEEEEECCE---EE---EeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCCEEEECCEECC----
Confidence 6899999999763 35 677999999999999999999999999999999999 99999999999986
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|+||++..+..+ +|.+|+.++.... ..++++.++++.++++.++|.+
T Consensus 66 --~~~~~~r~ig~v~Q~~~l~~~~----------tv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~l~~---------- 122 (232)
T d2awna2 66 --DTPPAERGVGMVFQSYALYPHL----------SVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAH---------- 122 (232)
T ss_dssp --TSCGGGTCEEEECSSCCC--------------------------------CHHHHHHHHHHHHC--------------
T ss_pred --CCchhhceeeeeccccccccch----------hHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCChh----------
Confidence 2222234567777765544333 5556666554322 2345677889999999999988
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
+.+++|++||||||||++||||| ||||++||+ |+|+|+||| +.+.
T Consensus 123 -------~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~ 195 (232)
T d2awna2 123 -------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAM 195 (232)
T ss_dssp ------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHH
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 57999999999999999999999 999999985 999999999 6799
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
.+||||++ |++|+|+++|++++++.+|.+++++.|+
T Consensus 196 ~~~dri~v-m~~G~iv~~G~~~el~~~P~~~~v~~fl 231 (232)
T d2awna2 196 TLADKIVV-LDAGRVAQVGKPLELYHYPADRFVAGFI 231 (232)
T ss_dssp HHCSEEEE-EETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HhCCEEEE-EECCEEEEEeCHHHHHhCCCCHHHHHhc
Confidence 99999975 9999999999999999999998887764
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.3e-51 Score=373.29 Aligned_cols=199 Identities=14% Similarity=0.221 Sum_probs=167.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+|+|++ . + |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 1 mi~v~nlsk~y~~--~--a---L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~-----p~sG~I~~~G~~i~~-- 66 (229)
T d3d31a2 1 MIEIESLSRKWKN--F--S---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTD-- 66 (229)
T ss_dssp CEEEEEEEEECSS--C--E---EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTT--
T ss_pred CEEEEEEEEEeCC--E--E---EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCCCEEEEccEeccc--
Confidence 5899999999975 2 4 777999999999999999999999999999999999 999999999999862
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
....++.++|++|++..+..+ |.+|+.+ +....+. + .++++.++++.+++.+
T Consensus 67 ----~~~~~r~ig~v~Q~~~l~~~~tV~enl~~-----------~~~~~~~-~---~~~~~~~~l~~~~l~~-------- 119 (229)
T d3d31a2 67 ----LSPEKHDIAFVYQNYSLFPHMNVKKNLEF-----------GMRMKKI-K---DPKRVLDTARDLKIEH-------- 119 (229)
T ss_dssp ----SCHHHHTCEEECTTCCCCTTSCHHHHHHH-----------HHHHHCC-C---CHHHHHHHHHHTTCTT--------
T ss_pred ----cchhHhcceeeccccccCccccHHHHHHH-----------HHhhccc-c---HHHHHHHHHHHhcchh--------
Confidence 222244677877777666554 5555544 3322221 1 2357889999999988
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GD 280 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~ 280 (346)
++++++.+|||||||||+||||| ||||++||+ |+|+|+||| ++
T Consensus 120 ---------~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~ 190 (229)
T d3d31a2 120 ---------LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (229)
T ss_dssp ---------TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred ---------hHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHH
Confidence 57999999999999999999999 999999985 899999999 57
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
+.++||||++ |++|+|+++|++++++.+|.+++++.|+
T Consensus 191 ~~~~~drv~v-m~~G~iv~~g~~~el~~~P~~~~v~~fl 228 (229)
T d3d31a2 191 ARIMADRIAV-VMDGKLIQVGKPEEIFEKPVEGRVASFV 228 (229)
T ss_dssp HHHHCSEEEE-ESSSCEEEEECHHHHHSSCCTTHHHHHH
T ss_pred HHHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHhcc
Confidence 9999999975 9999999999999999999999887775
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-51 Score=379.52 Aligned_cols=212 Identities=17% Similarity=0.150 Sum_probs=172.9
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+|+|++. .+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|+++....
T Consensus 2 ~Lev~nl~k~yg~~---~a---l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~-----p~~G~I~~~G~~i~~~~ 70 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGH---EV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLVR 70 (258)
T ss_dssp CEEEEEEEEEETTE---EE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEEE
T ss_pred eEEEEEEEEEECCE---EE---EcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc-----CCCCCEEECCEEeccCC
Confidence 48999999999763 35 777999999999999999999999999999999999 99999999999985211
Q ss_pred cccc---------cccCCCCccceeecccccccchhhchHhhHH-HHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCC
Q 019066 150 FLQE---------YTIPRGSNSFSLYDTRSLSDDASDNINMIKL-WIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 219 (346)
Q Consensus 150 ~~~~---------~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 219 (346)
.... ....++.++++||+ +.+++. +|.+|+.++.......+..+.++++.++++.+++.
T Consensus 71 ~~~~~~~~~~~~~~~~~r~~ig~vfQ~-----------~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 139 (258)
T d1b0ua_ 71 DKDGQLKVADKNQLRLLRTRLTMVFQH-----------FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID 139 (258)
T ss_dssp CTTSSEEESCHHHHHHHHHHEEEECSS-----------CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC
T ss_pred ccchhcccccHhHHHHHhcceEEEEec-----------hhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCc
Confidence 1100 00112334455554 444443 56666666554444556778889999999999998
Q ss_pred cccccccceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEE
Q 019066 220 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVV 274 (346)
Q Consensus 220 ~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tvi 274 (346)
+.. .+++|++|||||||||+||||| ||||++||. |+|+|
T Consensus 140 ~~~----------------~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til 203 (258)
T d1b0ua_ 140 ERA----------------QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 203 (258)
T ss_dssp HHH----------------HTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred hhh----------------hccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceE
Confidence 732 4788999999999999999999 999999984 89999
Q ss_pred EEec--hhhhccccEEEEEecCCeEeecCCccccccCCCCCChHHHHH
Q 019066 275 VVTH--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELI 320 (346)
Q Consensus 275 iiTH--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~ 320 (346)
+||| +.+.++||||+| |++|+|+++|++++++.+|.+++++.|+.
T Consensus 204 ~vtHdl~~~~~~adri~v-m~~G~iv~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 204 VVTHEMGFARHVSSHVIF-LHQGKIEEEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp EECSCHHHHHHHCSEEEE-EETTEEEEEECHHHHHHSCCSHHHHHHHH
T ss_pred EEeCCHHHHHHhCCEEEE-EECCEEEEEcCHHHHHhCCCCHHHHHHHh
Confidence 9999 678899999975 99999999999999999999999998874
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=9.5e-51 Score=371.85 Aligned_cols=202 Identities=13% Similarity=0.152 Sum_probs=163.8
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
||+++||+|+|+++.. + |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|+++....
T Consensus 1 mle~knvsf~Y~~~~~--v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~~ 70 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQ--I---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNIS 70 (242)
T ss_dssp CEEEEEEEECSSSSSC--S---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTTS
T ss_pred CEEEEEEEEECCCCCc--e---eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC-----CCCCEEEECCEEecccc
Confidence 5899999999976554 3 788999999999999999999999999999999999 99999999999986110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
....|+.++|++|++..|.+ ++++|+.++.. .....+.+.++++.+++...+..+|+++
T Consensus 71 ----~~~~r~~i~~v~Q~~~lf~~-----------ti~eNi~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (242)
T d1mv5a_ 71 ----LENWRSQIGFVSQDSAIMAG-----------TIRENLTYGLE------GDYTDEDLWQVLDLAFARSFVENMPDQL 129 (242)
T ss_dssp ----CSCCTTTCCEECCSSCCCCE-----------EHHHHTTSCTT------SCSCHHHHHHHHHHHTCTTTTTSSTTGG
T ss_pred ----HHHHHhheEEEccccccCCc-----------chhhheecccc------cccchhhHHHHHHHHHhhhhhccCcccc
Confidence 11124456666666655544 44555544322 1122355667888899999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEech-hhhcc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLLSL 284 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH~-~~~~~ 284 (346)
+|.++++ +.+||||||||++||||| |||||+||. ++|+|+|||+ .....
T Consensus 130 ~~~i~~~------g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 203 (242)
T d1mv5a_ 130 NTEVGER------GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (242)
T ss_dssp GCEESTT------SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred cccccCC------CCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 9999988 458999999999999999 999999985 8999999993 33345
Q ss_pred ccEEEEEecCCeEeecCCccccccC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
||||++ |++|+|++.|++++++++
T Consensus 204 ~D~i~v-l~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 204 ADKIYF-IEKGQITGSGKHNELVAT 227 (242)
T ss_dssp CSEEEE-EETTEECCCSCHHHHHHH
T ss_pred CCEEEE-EECCEEEEECCHHHHHhC
Confidence 999964 999999999999999875
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.4e-51 Score=371.70 Aligned_cols=207 Identities=14% Similarity=0.131 Sum_probs=168.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|+|+||+|+|++.... + |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 2 I~~~nvsf~Y~~~~~~-v---L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~--- 69 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPV-I---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLAL--- 69 (241)
T ss_dssp EEEEEEEEESSTTSCE-E---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTT---
T ss_pred eEEEEEEEEeCCCCcc-e---EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC-----CCCCEEEECCEEecc---
Confidence 7999999999654431 4 777999999999999999999999999999999999 999999999999861
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
+.....+..+++|+|++.++..++.+|+.++.. ....+++.++++..++.+.+..+|+|++
T Consensus 70 ------------~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 130 (241)
T d2pmka1 70 ------------ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-------GMSVEKVIYAAKLAGAHDFISELREGYN 130 (241)
T ss_dssp ------------SCHHHHHHHEEEECSSCCCTTSBHHHHHCTTST-------TCCHHHHHHHHHHHTCHHHHTTSTTGGG
T ss_pred ------------cchhhhhceEEEEecccccCCccccccccccCc-------cccHHHHHHHHHHHhhHHHHHhhhcchh
Confidence 122222333344444444454566666665432 1224567788899999999999999999
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhhccc
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSLT 285 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~~~a 285 (346)
|.+++. +.+||||||||++||||| |||||+||. ++|+|+||| -...+.|
T Consensus 131 t~i~~~------g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~ 204 (241)
T d2pmka1 131 TIVGEQ------GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA 204 (241)
T ss_dssp SBCSTT------TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTS
T ss_pred hhcCCC------CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhC
Confidence 999988 559999999999999999 999999984 899999999 3444679
Q ss_pred cEEEEEecCCeEeecCCccccccCCCCCCh
Q 019066 286 DRARIRTYLGELLGIPPAKQIFDIPESSDP 315 (346)
Q Consensus 286 Dri~v~l~~G~iv~~g~~~~l~~~~~~~~~ 315 (346)
|||+ +|++|+|++.|++++++.+|...|.
T Consensus 205 D~i~-vl~~G~Iv~~G~~~ell~~~~~~y~ 233 (241)
T d2pmka1 205 DRII-VMEKGKIVEQGKHKELLSEPESLYS 233 (241)
T ss_dssp SEEE-EEETTEEEEEECHHHHHHSTTCHHH
T ss_pred CEEE-EEECCEEEEECCHHHHHhCCCCHHH
Confidence 9996 5999999999999999998876663
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.3e-49 Score=358.02 Aligned_cols=199 Identities=18% Similarity=0.155 Sum_probs=157.8
Q ss_pred cEEEeeeEEEeCCCC-ceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCc
Q 019066 70 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 148 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~-~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~ 148 (346)
||+++||+|+|+.+. .+.| |+||||+|++||++||+||||||||||+++|+|+++ |++|+|+++|+++...
T Consensus 1 mI~i~nlsk~y~~~~~~~~a---l~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~-----p~sG~I~~~g~~i~~~ 72 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEeEEEEeCCCCeeEEE---EeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC-----CCcceeEECCEEcCcC
Confidence 589999999997544 2346 666999999999999999999999999999999999 9999999999998632
Q ss_pred ccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhc--cCCChHHHHHHHHHHHHHcCCCccccccc
Q 019066 149 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVI--RRSDSSSLRNRMRCKAHKIGCEPSVIRKV 226 (346)
Q Consensus 149 ~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 226 (346)
...+...+.++.++|++|++..+..+ +|.+|+.++.... ...+..+..+++.++|+.++|.+.
T Consensus 73 ~~~~~~~~r~~~ig~v~Q~~~l~~~~----------tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----- 137 (230)
T d1l2ta_ 73 DDDELTKIRRDKIGFVFQQFNLIPLL----------TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER----- 137 (230)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCTTS----------CHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGG-----
T ss_pred ChhhcchhhcceEEEEecchhhCcCc----------cHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhh-----
Confidence 22222223344567777776555444 4445544443321 233456778889999999999863
Q ss_pred ceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech-
Q 019066 227 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG- 279 (346)
Q Consensus 227 ~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~- 279 (346)
+++++|++|||||||||+||||| ||||++||+ |+|+|+|||+
T Consensus 138 -----------~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~ 206 (230)
T d1l2ta_ 138 -----------FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (230)
T ss_dssp -----------GTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH
T ss_pred -----------hhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH
Confidence 36899999999999999999999 999999985 8999999993
Q ss_pred hhhccccEEEEEecCCeEeecCCc
Q 019066 280 DLLSLTDRARIRTYLGELLGIPPA 303 (346)
Q Consensus 280 ~~~~~aDri~v~l~~G~iv~~g~~ 303 (346)
.++++||||++ |++|+|+++|++
T Consensus 207 ~~a~~~drv~~-m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 207 NVARFGERIIY-LKDGEVEREEKL 229 (230)
T ss_dssp HHHTTSSEEEE-EETTEEEEEEEC
T ss_pred HHHHhCCEEEE-EECCEEEEeccC
Confidence 34579999964 999999999865
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-49 Score=366.97 Aligned_cols=205 Identities=10% Similarity=0.131 Sum_probs=165.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
..-|+|+||+|+|+++.. .+ |+||||+|++||++|||||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 11 ~g~I~~~nvsf~Y~~~~~-~~---L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~ 81 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGREV-PA---LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-----IDEGHILMDGHDLRE 81 (253)
T ss_dssp CCCEEEEEEEECSSSSSC-CS---EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEETTT
T ss_pred ceEEEEEEEEEEeCCCCC-ce---eeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC-----CCccEEEECCcccch
Confidence 345999999999976542 24 777999999999999999999999999999999999 999999999999862
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
.. ....|+.++|++|++..+.+.+. +|+.++.. ....++++.++++.+++.+++..+|+
T Consensus 82 ~~----~~~~r~~i~~v~Q~~~l~~~ti~-----------~n~~~~~~------~~~~~~~i~~a~~~~~l~~~i~~l~~ 140 (253)
T d3b60a1 82 YT----LASLRNQVALVSQNVHLFNDTVA-----------NNIAYART------EEYSREQIEEAARMAYAMDFINKMDN 140 (253)
T ss_dssp BC----HHHHHHTEEEECSSCCCCSSBHH-----------HHHHTTTT------SCCCHHHHHHHHHTTTCHHHHHHSTT
T ss_pred hh----hhhhhheEEEEeeccccCCcchh-----------hhhhhcCc------ccCCHHHHHHHHHHHhHHHHHHhccc
Confidence 11 01113345666666655544444 44444321 11234667888999999999999999
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEech-hhh
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTHG-DLL 282 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH~-~~~ 282 (346)
|++|.+++. +.+||||||||++||||| |||||+||. ++|+|+|||+ ...
T Consensus 141 gl~t~~~~~------~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 214 (253)
T d3b60a1 141 GLDTIIGEN------GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 214 (253)
T ss_dssp GGGSBCCTT------SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGT
T ss_pred cchhhhcCC------CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH
Confidence 999999987 669999999999999999 999999984 8999999993 344
Q ss_pred ccccEEEEEecCCeEeecCCccccccC
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
..||||+| |++|+|++.|++++++.+
T Consensus 215 ~~~D~v~v-l~~G~Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 215 EQADEIVV-VEDGIIVERGTHSELLAQ 240 (253)
T ss_dssp TTCSEEEE-EETTEEEEEECHHHHHHH
T ss_pred HhCCEEEE-EECCEEEEECCHHHHHhC
Confidence 67999964 999999999999999976
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9e-50 Score=367.20 Aligned_cols=207 Identities=12% Similarity=0.121 Sum_probs=162.2
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+..|+|+||+|+|++.....+ |+||||+|++||++|||||||||||||+++|+|+++ |++|+|+++|+++..
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~-----p~~G~I~i~g~~i~~ 80 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLV---LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-----PTGGQLLLDGKPLPQ 80 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGG
T ss_pred cceEEEEEEEEECCCCCCCEe---EeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-----CCcCEEEECCEecch
Confidence 345999999999976432235 777999999999999999999999999999999999 999999999999861
Q ss_pred cccccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 227 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 227 (346)
+.....+...++|+|++.++..++.+|+.++... ........++.+..++...+..+|+
T Consensus 81 ---------------~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~------~~~~~~~~~~~~~~~~~~~i~~l~~ 139 (251)
T d1jj7a_ 81 ---------------YEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQ------KPTMEEITAAAVKSGAHSFISGLPQ 139 (251)
T ss_dssp ---------------BCHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSS------CCCHHHHHHHHHHHTCHHHHHTSTT
T ss_pred ---------------hhhHHHHHHhhhccccccccCcchhhhhhhhhcc------cchHHHHHHHHHHHHHHHHHHhccc
Confidence 1122223333444444444444566666655321 1122345556677788888889999
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEech-h
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTHG-D 280 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH~-~ 280 (346)
|++|.+++. +.+||||||||++||||| |||||+||. ++|+|+|||+ .
T Consensus 140 g~~~~i~~~------~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~ 213 (251)
T d1jj7a_ 140 GYDTEVDEA------GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 213 (251)
T ss_dssp GGGCBCCSS------CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH
T ss_pred cchhhHhcc------CccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH
Confidence 999999876 669999999999999999 999999984 7899999993 3
Q ss_pred hhccccEEEEEecCCeEeecCCccccccCC
Q 019066 281 LLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 281 ~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
..+.||||++ |++|+|++.|+++++++++
T Consensus 214 ~~~~aDrI~v-l~~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 214 LVEQADHILF-LEGGAIREGGTHQQLMEKK 242 (251)
T ss_dssp HHHTCSEEEE-EETTEEEEEECHHHHHHHT
T ss_pred HHHhCCEEEE-EECCEEEEECCHHHHHhCC
Confidence 4456999964 9999999999999999763
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.2e-49 Score=366.75 Aligned_cols=203 Identities=12% Similarity=0.126 Sum_probs=165.1
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
-|+|+||+|+|+++.. .+ |+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 16 ~I~~~nvsf~Y~~~~~-~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-----p~~G~I~i~g~~i~~~~ 86 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEA-PI---LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIKDFL 86 (255)
T ss_dssp CEEEEEEEECSCSSSC-CS---EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGGGSC
T ss_pred EEEEEEEEEEeCCCCC-cc---eeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC-----ccccccccCCEEcccCC
Confidence 4999999999976542 14 777999999999999999999999999999999999 99999999999986110
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
. ...|+.++|++|++ .++..++++||.++.. ...++++.++++.+++.+++..+|+|+
T Consensus 87 ---~-~~lr~~i~~v~Q~~-----------~lf~~Ti~eNi~~g~~-------~~~~~~~~~al~~~~l~~~i~~lp~gl 144 (255)
T d2hyda1 87 ---T-GSLRNQIGLVQQDN-----------ILFSDTVKENILLGRP-------TATDEEVVEAAKMANAHDFIMNLPQGY 144 (255)
T ss_dssp ---H-HHHHHTEEEECSSC-----------CCCSSBHHHHHGGGCS-------SCCHHHHHHHHHHTTCHHHHHTSTTGG
T ss_pred ---H-HHhhheeeeeeccc-----------cCCCCCHHHHHhccCc-------CCCHHHHHHHHHHhCCHHHHHhccccc
Confidence 0 01133445555554 4444456666655432 112456788999999999999999999
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC---------------CceEEEEec-hhhhcc
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD---------------DKPVVVVTH-GDLLSL 284 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~---------------g~tviiiTH-~~~~~~ 284 (346)
+|.+++++ .+||||||||++||||| |||||+||. ++|+|+||| -.....
T Consensus 145 ~t~i~~~g------~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~ 218 (255)
T d2hyda1 145 DTEVGERG------VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 218 (255)
T ss_dssp GCBCCGGG------TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT
T ss_pred cchhcCCC------CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 99999984 48999999999999999 999999984 899999999 344567
Q ss_pred ccEEEEEecCCeEeecCCccccccCC
Q 019066 285 TDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 285 aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
||||+ +|++|+|++.|+++++++++
T Consensus 219 ~D~ii-~l~~G~iv~~G~~~eLl~~~ 243 (255)
T d2hyda1 219 ADKIV-VIENGHIVETGTHRELIAKQ 243 (255)
T ss_dssp CSEEE-EEETTEEEEEECHHHHHHTT
T ss_pred CCEEE-EEECCEEEEECCHHHHHhCC
Confidence 99996 59999999999999999864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.6e-46 Score=341.50 Aligned_cols=201 Identities=17% Similarity=0.222 Sum_probs=166.0
Q ss_pred EEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCccc
Q 019066 71 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 150 (346)
Q Consensus 71 l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~ 150 (346)
|++ ++.++|++. . + ||||++. +|+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 3 l~v-~~~k~~g~~--~-----~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~-----p~~G~I~~~G~~i~---- 63 (240)
T d2onka1 3 LKV-RAEKRLGNF--R-----L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADIT---- 63 (240)
T ss_dssp EEE-EEEEEETTE--E-----E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECT----
T ss_pred EEE-EEEEEECCE--E-----E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECC----
Confidence 678 578999762 1 4 5999995 68999999999999999999999999 99999999999986
Q ss_pred ccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceee
Q 019066 151 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVI 230 (346)
Q Consensus 151 ~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 230 (346)
.....++.++|++|++..+..+ +|.+|+.+++. ..++.+.++++.++++.+||.+
T Consensus 64 --~~~~~~r~ig~v~Q~~~l~~~l----------tV~enl~~~l~---~~~~~~~~~~v~~~l~~~gl~~---------- 118 (240)
T d2onka1 64 --PLPPERRGIGFVPQDYALFPHL----------SVYRNIAYGLR---NVERVERDRRVREMAEKLGIAH---------- 118 (240)
T ss_dssp --TSCTTTSCCBCCCSSCCCCTTS----------CHHHHHHTTCT---TSCHHHHHHHHHHHHHTTTCTT----------
T ss_pred --cCCHHHcCceeeccchhhcccc----------hhhHhhhhhhc---ccCHHHHHHHHHHHHHhcCcHh----------
Confidence 2222355677777776555433 55566666543 2345677889999999999988
Q ss_pred eeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC-----------------CceEEEEec--hhhh
Q 019066 231 FVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD-----------------DKPVVVVTH--GDLL 282 (346)
Q Consensus 231 ~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~-----------------g~tviiiTH--~~~~ 282 (346)
+++++|.+|||||||||+||||| ||||++||+ |+|+|+||| +++.
T Consensus 119 -------~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~ 191 (240)
T d2onka1 119 -------LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191 (240)
T ss_dssp -------TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHH
T ss_pred -------hhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 57999999999999999999999 999999995 899999999 6799
Q ss_pred ccccEEEEEecCCeEeecCCccccccCCCCCChHHHHHHHHH
Q 019066 283 SLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENELIIVDM 324 (346)
Q Consensus 283 ~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~~~~~~ 324 (346)
++||||++ |++|+|++.|+++++++.| +++++.++...+.
T Consensus 192 ~~adri~v-m~~G~ii~~G~~~el~~~~-~~~v~~fl~~~n~ 231 (240)
T d2onka1 192 MLADEVAV-MLNGRIVEKGKLKELFSAK-NGEVAEFLSARNL 231 (240)
T ss_dssp HHCSEEEE-EETTEEEEEECHHHHHHSC-CSSHHHHGGGHHH
T ss_pred HhCCEEEE-EECCEEEEEecHHHHhcCC-CHHHHHHhCcchh
Confidence 99999975 9999999999999999876 4677888765443
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-47 Score=350.32 Aligned_cols=198 Identities=15% Similarity=0.211 Sum_probs=158.0
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+.+|+++||+|+|++. ++ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 4 d~~Lev~~l~k~yg~~---~a---l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~-----p~~G~I~~~G~~i~~ 72 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGAI---HA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETTE---EE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred ceEEEEeeEEEEECCE---EE---EeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEeccccccc
Confidence 5589999999999763 35 677999999999999999999999999999999999 999999999999862
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHc-CCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~ 225 (346)
.. .....+..++|++|+...|..+ |.+|+ .++.... ......++.+.++++.+ ++.+
T Consensus 73 ~~---~~~~~r~gi~~~~q~~~l~~~ltv~en~-----------~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~----- 131 (240)
T d1ji0a_ 73 KP---AHVINRMGIALVPEGRRIFPELTVYENL-----------MMGAYNR--KDKEGIKRDLEWIFSLFPRLKE----- 131 (240)
T ss_dssp CC---HHHHHHTTEEEECSSCCCCTTSBHHHHH-----------HGGGTTC--CCSSHHHHHHHHHHHHCHHHHT-----
T ss_pred cc---HHHHHHhcccccCcccccCCcccHHHHH-----------HHHHHhc--CCHHHHHHHHHHHHHHhhChHH-----
Confidence 11 1112244567778777666554 55544 3333221 12344455566666665 5655
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
..++++++||||||||++||||| ||||++||+ |+|||+|||
T Consensus 132 ------------~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l 199 (240)
T d1ji0a_ 132 ------------RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199 (240)
T ss_dssp ------------TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred ------------HHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 46899999999999999999999 999999985 899999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
+.+.++||||+| |++|+|+++|++++++++|
T Consensus 200 ~~~~~~~drv~v-l~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 200 LGALKVAHYGYV-LETGQIVLEGKASELLDNE 230 (240)
T ss_dssp HHHHHHCSEEEE-EETTEEEEEEEHHHHHTCH
T ss_pred HHHHHhCCEEEE-EECCEEEEEcCHHHHhcCH
Confidence 678999999975 9999999999999998754
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.2e-47 Score=350.84 Aligned_cols=210 Identities=12% Similarity=0.132 Sum_probs=162.5
Q ss_pred CCcEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCC
Q 019066 68 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 147 (346)
Q Consensus 68 ~~~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~ 147 (346)
+.+|+++||+++|++. ++ |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|+++|+++..
T Consensus 2 M~iL~v~nlsk~yg~~---~a---L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~-----p~~G~I~~~g~~i~~ 70 (254)
T d1g6ha_ 2 MEILRTENIVKYFGEF---KA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 70 (254)
T ss_dssp CEEEEEEEEEEEETTE---EE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred cceEEEEEEEEEECCe---EE---EcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc-----CCCcEEEECCEeccc
Confidence 3479999999999763 35 677999999999999999999999999999999999 999999999999862
Q ss_pred cccccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcch-hhccCCChHHHHHHHHHHHHHcCCCcccccc
Q 019066 148 TYFLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 225 (346)
Q Consensus 148 ~~~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 225 (346)
.. .....+..+++++|++..+..+ |.+|+.+............. ............+++.++++.+++.+
T Consensus 71 ~~---~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 142 (254)
T d1g6ha_ 71 KE---PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH----- 142 (254)
T ss_dssp CC---HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-----
T ss_pred hh---HHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcch-----
Confidence 21 1122233567778877666555 66665442110000000000 01112234566678999999999987
Q ss_pred cceeeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--
Q 019066 226 VNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-- 278 (346)
Q Consensus 226 ~~~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-- 278 (346)
..++++.+|||||||||+||||| ||||++||+ |+|||+|||
T Consensus 143 ------------~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl 210 (254)
T d1g6ha_ 143 ------------LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 210 (254)
T ss_dssp ------------GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred ------------hccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 56889999999999999999999 999999984 999999999
Q ss_pred hhhhccccEEEEEecCCeEeecCCccccccC
Q 019066 279 GDLLSLTDRARIRTYLGELLGIPPAKQIFDI 309 (346)
Q Consensus 279 ~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~ 309 (346)
+++.++||||+| |++|+|+++|+++|++.+
T Consensus 211 ~~~~~~~Drv~v-m~~G~iv~~g~~~e~~~~ 240 (254)
T d1g6ha_ 211 DIVLNYIDHLYV-MFNGQIIAEGRGEEEIKN 240 (254)
T ss_dssp STTGGGCSEEEE-EETTEEEEEEESHHHHHH
T ss_pred HHHHHhCCEEEE-EeCCEEEEEecHHHHhhc
Confidence 689999999975 999999999999886543
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.4e-46 Score=340.55 Aligned_cols=204 Identities=14% Similarity=0.138 Sum_probs=171.2
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+++|++.. + |+||||+|++||++||+||||||||||+|+|+|+++ |++|+|.++|+++...
T Consensus 2 aI~v~nl~k~yg~~~---v---l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~-----p~~G~i~i~G~~i~~~- 69 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKE---I---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVVEE- 69 (238)
T ss_dssp CEEEEEEEEEETTEE---E---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTC-
T ss_pred CEEEEeEEEEECCEE---E---EccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECcEecccC-
Confidence 489999999998743 4 777999999999999999999999999999999999 9999999999998521
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
... .++.++|++|+...+..+ +.||+.++... ...+..+.++++.++++.+++.+
T Consensus 70 ---~~~-~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~------------~~~~~~~~~~~~~~~l~~~~l~~-------- 125 (238)
T d1vpla_ 70 ---PHE-VRKLISYLPEEAGAYRNMQGIEYLRFVAGF------------YASSSSEIEEMVERATEIAGLGE-------- 125 (238)
T ss_dssp ---HHH-HHTTEEEECTTCCCCTTSBHHHHHHHHHHH------------HCCCHHHHHHHHHHHHHHHCCGG--------
T ss_pred ---hHH-HHhhEeEeeeccccCCCccHHHHHHHHHHh------------cCCCHHHHHHHHHHHHHhCCCHH--------
Confidence 111 245688999987777666 77776654422 12345667788999999999988
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEec--hhh
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH--GDL 281 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH--~~~ 281 (346)
..++++.+||||||||++||||| ||||++||+ |+|||++|| +++
T Consensus 126 ---------~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~ 196 (238)
T d1vpla_ 126 ---------KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEV 196 (238)
T ss_dssp ---------GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred ---------HHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 56889999999999999999999 999999984 899999999 689
Q ss_pred hccccEEEEEecCCeEeecCCccccccCCCCCChHHHH
Q 019066 282 LSLTDRARIRTYLGELLGIPPAKQIFDIPESSDPENEL 319 (346)
Q Consensus 282 ~~~aDri~v~l~~G~iv~~g~~~~l~~~~~~~~~~~~~ 319 (346)
..+||||++ |++|+|++.|+++++..++.....+..+
T Consensus 197 ~~~~drv~v-l~~G~iv~~g~~~el~~~~~~~~~~~~f 233 (238)
T d1vpla_ 197 EFLCDRIAL-IHNGTIVETGTVEELKERYKAQNIEEVF 233 (238)
T ss_dssp TTTCSEEEE-EETTEEEEEEEHHHHHHHTTCSSHHHHH
T ss_pred HHhCCEEEE-EECCEEEEEcCHHHHHhccCCchHHHHH
Confidence 999999965 9999999999999998877766655443
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.3e-42 Score=318.67 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=141.5
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcccccccccCCCCccceeeccccc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 171 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~~~r~~i~~~~~d~~~~ 171 (346)
|+||||+|++||++||+||||||||||+++|+|+++ |++|.|.++|+ ++|++|+...+
T Consensus 52 L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~-----------------i~~v~Q~~~l~ 109 (281)
T d1r0wa_ 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-----ASEGIIKHSGR-----------------VSFCSQFSWIM 109 (281)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEECCSC-----------------EEEECSSCCCC
T ss_pred EeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc-----CCCcEEEECCE-----------------EEEEecccccc
Confidence 888999999999999999999999999999999999 99999999883 25777776665
Q ss_pred ccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccceeeeeechhhhcccCCCCCCHHHH
Q 019066 172 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 251 (346)
Q Consensus 172 ~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~e~~~~~~~~~~LSgGqr 251 (346)
.+.|.+ |+.++.. ....+..++++.+.+..++..+++++++++++. +.+||||||
T Consensus 110 ~~tv~e-----------ni~~~~~--------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~------~~~LSgGqk 164 (281)
T d1r0wa_ 110 PGTIKE-----------NIIFGVS--------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG------GVTLSGGQR 164 (281)
T ss_dssp SEEHHH-----------HHTTTSC--------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT------CTTSCHHHH
T ss_pred Cceeec-----------ccccccc--------ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhh------ccCCCHHHH
Confidence 554444 4444321 012345667788888888889999999999987 458999999
Q ss_pred HHHHHHHhc---------CccccCCCC----------------CceEEEEec-hhhhccccEEEEEecCCeEeecCCccc
Q 019066 252 YNQIVATTF---------NCPYLSFRD----------------DKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQ 305 (346)
Q Consensus 252 QRv~IArAL---------DEPts~Ld~----------------g~tviiiTH-~~~~~~aDri~v~l~~G~iv~~g~~~~ 305 (346)
||++||||| ||||++||. ++|+|+||| -...+.||||++ |++|+|++.|++++
T Consensus 165 QRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~v-l~~G~i~~~Gt~~e 243 (281)
T d1r0wa_ 165 ARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI-LHQGSSYFYGTFSE 243 (281)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEE-EETTEEEEEECHHH
T ss_pred HHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEE-EECCEEEEECCHHH
Confidence 999999999 999999883 889999999 344567999965 99999999999999
Q ss_pred ccc
Q 019066 306 IFD 308 (346)
Q Consensus 306 l~~ 308 (346)
++.
T Consensus 244 L~~ 246 (281)
T d1r0wa_ 244 LQS 246 (281)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-41 Score=308.13 Aligned_cols=187 Identities=14% Similarity=0.147 Sum_probs=142.8
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
+|+++||+++| + |++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++....
T Consensus 3 il~~~dv~~~~-------~---l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~------~~~G~I~~~g~~i~~~~ 66 (231)
T d1l7vc_ 3 VMQLQDVAEST-------R---LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT------SGKGSIQFAGQPLEAWS 66 (231)
T ss_dssp EEEEEEECCTT-------T---SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC------CCSSEEEESSSBGGGSC
T ss_pred EEEEECcccCc-------e---ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC------CCceEEEECCEECCcCC
Confidence 68999998655 3 67799999999999999999999999999999965 67899999999875211
Q ss_pred cccccccCCCCccceeecccccccchhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCccccccccee
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFV 229 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 229 (346)
... + +...+++++........ ++.+++.++.. .....+.+.++++.+++.+
T Consensus 67 -~~~--~-~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~------~~~~~~~~~~~~~~~~l~~--------- 117 (231)
T d1l7vc_ 67 -ATK--L-ALHRAYLSQQQTPPFAT----------PVWHYLTLHQH------DKTRTELLNDVAGALALDD--------- 117 (231)
T ss_dssp -HHH--H-HHHEEEECSCCCCCSSC----------BHHHHHHHHCS------CTTCHHHHHHHHHHTTCTT---------
T ss_pred -HHH--H-HhhceeeeccccCCccc----------cHHHHhhhccc------hhhHHHHHHHHHHhcCCHh---------
Confidence 111 1 11224554443222111 12222222111 1233467888999999988
Q ss_pred eeeechhhhcccCCCCCCHHHHHHHHHHHhc----------------CccccCCCC----------------CceEEEEe
Q 019066 230 IFVVDGLAVLKSMEGDSDVEKQYNQIVATTF----------------NCPYLSFRD----------------DKPVVVVT 277 (346)
Q Consensus 230 ~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL----------------DEPts~Ld~----------------g~tviiiT 277 (346)
.+++++.+||||||||++||||| ||||++||. |+|||++|
T Consensus 118 --------~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vt 189 (231)
T d1l7vc_ 118 --------KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSS 189 (231)
T ss_dssp --------TTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred --------HhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 56889999999999999999974 999999984 99999999
Q ss_pred c--hhhhccccEEEEEecCCeEeecCCccccccCC
Q 019066 278 H--GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 310 (346)
Q Consensus 278 H--~~~~~~aDri~v~l~~G~iv~~g~~~~l~~~~ 310 (346)
| +.+.++|||+++ |++|+|++.|++++++.+|
T Consensus 190 Hdl~~~~~~~dri~v-l~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 190 HDLNHTLRHAHRAWL-LKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp CCHHHHHHHCSBCCB-EETTEECCCSBHHHHSCHH
T ss_pred CCHHHHHHHCCEEEE-EECCEEEEECCHHHHhCCh
Confidence 9 679999999975 9999999999999998754
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.8e-36 Score=269.35 Aligned_cols=170 Identities=15% Similarity=0.184 Sum_probs=124.6
Q ss_pred cEEEeeeEEEeCCCCceecccCceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCCCcc
Q 019066 70 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 149 (346)
Q Consensus 70 ~l~~~~l~~~y~~~~~~~~l~~L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~~~~ 149 (346)
.|+++||+++|+. . + |+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.
T Consensus 2 ~lev~~ls~~y~~--~--v---l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~-----p~~G~I~~~g~~i~--- 66 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK--P--V---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPIT--- 66 (200)
T ss_dssp EEEEEEEEEESSS--E--E---EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGG---
T ss_pred eEEEEEEEEEeCC--e--E---EeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc-----cCCCEEEECCEehh---
Confidence 4899999999953 3 3 777999999999999999999999999999999999 99999999999985
Q ss_pred cccccccCCCCccceeecccccccc-hhhchHhhHHHHHhhhhcchhhccCCChHHHHHHHHHHHHHcCCCcccccccce
Q 019066 150 FLQEYTIPRGSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 228 (346)
Q Consensus 150 ~~~~~~~~r~~i~~~~~d~~~~~~~-v~qn~~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 228 (346)
. .+..++|++++...+..+ +.+++..... .... ...++++.++++.+++.+
T Consensus 67 ---~---~~~~i~~~~~~~~~~~~~t~~~~l~~~~~-----------~~~~---~~~~~~~~~~l~~~~~~~-------- 118 (200)
T d1sgwa_ 67 ---K---VKGKIFFLPEEIIVPRKISVEDYLKAVAS-----------LYGV---KVNKNEIMDALESVEVLD-------- 118 (200)
T ss_dssp ---G---GGGGEEEECSSCCCCTTSBHHHHHHHHHH-----------HTTC---CCCHHHHHHHHHHTTCCC--------
T ss_pred ---H---hcCcEEEEeecccCCCCcCHHHHHHHHHH-----------hcCC---ccCHHHHHHHHHHcCCcc--------
Confidence 1 122456777765544433 4444332221 1111 111345677888888765
Q ss_pred eeeeechhhhcccCCCCCCHHHHHHHHHHHhc---------CccccCCCC----------------CceEEEEechhhhc
Q 019066 229 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF---------NCPYLSFRD----------------DKPVVVVTHGDLLS 283 (346)
Q Consensus 229 ~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL---------DEPts~Ld~----------------g~tviiiTH~~~~~ 283 (346)
+++++.+||||||||++||||| ||||++||. +.++|+++|+. ..
T Consensus 119 ----------~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~-l~ 187 (200)
T d1sgwa_ 119 ----------LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-LS 187 (200)
T ss_dssp ----------TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC-CT
T ss_pred ----------cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech-hh
Confidence 2556789999999999999999 999999995 33333444432 35
Q ss_pred cccEEEEEecC
Q 019066 284 LTDRARIRTYL 294 (346)
Q Consensus 284 ~aDri~v~l~~ 294 (346)
+||++.+ |++
T Consensus 188 ~~D~~~~-l~~ 197 (200)
T d1sgwa_ 188 YCDVNEN-LHK 197 (200)
T ss_dssp TSSEEEE-GGG
T ss_pred hcchhhh-eee
Confidence 7999964 754
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.44 E-value=2.1e-15 Score=127.73 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeC
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG 145 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i 145 (346)
.++|+||||||||||+++|+|.++ ++.|.+.+.+.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~-----~~~g~~~~~~~~~ 38 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRD 38 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC-----CCcceEEECCcch
Confidence 489999999999999999999999 9999999987664
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.80 E-value=2e-08 Score=91.19 Aligned_cols=68 Identities=12% Similarity=-0.039 Sum_probs=46.9
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC---------------CceEEEEec-
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD---------------DKPVVVVTH- 278 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~---------------g~tviiiTH- 278 (346)
+++..+...+........+|+|||+...++..+ |||-++|++ +.-+|++||
T Consensus 202 ~i~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHs 281 (308)
T d1e69a_ 202 GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN 281 (308)
T ss_dssp --CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred hhhhhhhccccccchhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECC
Confidence 343333333333344668999999998887764 999999864 778999999
Q ss_pred hhhhccccEEEE-EecCC
Q 019066 279 GDLLSLTDRARI-RTYLG 295 (346)
Q Consensus 279 ~~~~~~aDri~v-~l~~G 295 (346)
..+.+.+|++.. .+.+|
T Consensus 282 p~~~~~~d~~~~v~~~~g 299 (308)
T d1e69a_ 282 KIVMEAADLLHGVTMVNG 299 (308)
T ss_dssp TTGGGGCSEEEEEEESSS
T ss_pred HHHHHhcccEEEEEEeCC
Confidence 666677898854 35555
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=6.7e-07 Score=74.42 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=30.1
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+++.+|++.+| +++|+|||||||||++.+|.-++
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 66688888887 99999999999999999998655
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=9.2e-06 Score=66.05 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|++|||||||++.|..-+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998776
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.65 E-value=1.7e-05 Score=73.80 Aligned_cols=63 Identities=8% Similarity=-0.082 Sum_probs=46.8
Q ss_pred eeeeeechhhhcccCCCCCCHHHHHHHHHHHhc-------------CccccCCCC----------------CceEEEEec
Q 019066 228 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTF-------------NCPYLSFRD----------------DKPVVVVTH 278 (346)
Q Consensus 228 ~~~~~v~e~~~~~~~~~~LSgGqrQRv~IArAL-------------DEPts~Ld~----------------g~tviiiTH 278 (346)
|+...|...+........||||||.++++|-.+ |||+++||+ +.-+|+|||
T Consensus 315 ~i~i~~~~~~~~~~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH 394 (427)
T d1w1wa_ 315 GIKYHATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 394 (427)
T ss_dssp --CEEEECTTCCCCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECS
T ss_pred CceEEEEeccchhhhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 445555545444455578999999998887653 999999984 456999999
Q ss_pred -hhhhccccEEEE
Q 019066 279 -GDLLSLTDRARI 290 (346)
Q Consensus 279 -~~~~~~aDri~v 290 (346)
..++..||+++.
T Consensus 395 ~~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 395 KNTMFEKSDALVG 407 (427)
T ss_dssp CHHHHTTCSEEEE
T ss_pred CHHHHHhcccEEE
Confidence 788888999854
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.60 E-value=1.4e-05 Score=69.72 Aligned_cols=35 Identities=31% Similarity=0.360 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
+|.+.+++|+||+|||||+|.|.+-.. ...|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~-----~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC-----CC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh-----hhccCccc
Confidence 689999999999999999999988665 45577653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=1.6e-05 Score=66.47 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|.++.|+||||||||||++.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999987664
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.50 E-value=2.3e-05 Score=63.97 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.|.++.|.||+||||||+.+.|..-+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999987654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=1.7e-05 Score=64.73 Aligned_cols=32 Identities=34% Similarity=0.624 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
.+.|+||+|||||||++.++..+. ...+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~-----~~~~~v~~ 34 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK-----SSGVPVDG 34 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-----HTTCCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-----HCCCEEEE
Confidence 588999999999999999999997 55444443
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.48 E-value=2.9e-05 Score=63.24 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=25.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+|-++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999998775
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.42 E-value=3.7e-05 Score=62.97 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|+|++|||||||++.|...+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999998888776
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=4.2e-05 Score=62.20 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.+.++.|+||+||||||+.+.|+.-+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5678999999999999999999998764
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.34 E-value=1.6e-05 Score=69.70 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
+|.+.+++|+||+|||||+|.|.+-.. ...|+|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~-----~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH-----hhhccccc
Confidence 578999999999999999999998765 55677763
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.30 E-value=4.6e-05 Score=62.07 Aligned_cols=25 Identities=40% Similarity=0.751 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..|+|+||+|||||||++.|+.-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998764
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.30 E-value=6e-05 Score=61.30 Aligned_cols=28 Identities=32% Similarity=0.670 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|-.++|.||+||||||+.+.|+--+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5677899999999999999999987664
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.27 E-value=8.3e-05 Score=59.93 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++.|.||+||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998775
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=8.2e-05 Score=63.75 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.++.|+||||||||||++.|.--++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999877654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.23 E-value=8.8e-05 Score=60.09 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999999885
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.22 E-value=9e-05 Score=60.49 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|.|++||||||+++.|+..+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998876
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.21 E-value=7.5e-05 Score=61.84 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++||-|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999998776
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=8.2e-05 Score=59.19 Aligned_cols=24 Identities=29% Similarity=0.762 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|+||+||||||+.+.|+--+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999988765
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.16 E-value=9.9e-05 Score=58.82 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.15 E-value=8.7e-05 Score=62.14 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||+|.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999853
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=0.00013 Score=67.70 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=23.2
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
++++.++.+.+|+|||||||||++.+|.
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3444555599999999999999999985
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.12 E-value=0.0001 Score=59.62 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+||+||||||+.+.|+--+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999987654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=6.5e-05 Score=62.25 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|-++.|+|++||||||+.+.|+..+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999988765
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.09 E-value=0.0001 Score=60.64 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|+|||||+|.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.07 E-value=0.00013 Score=59.66 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+++|+|+.|||||||+|.|.|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998854
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00014 Score=59.49 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+|+|+|.+|+|||||+|.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.00 E-value=0.0001 Score=61.01 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhhhc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+||+|++++|||||+|.|.|-.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999997743
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.00 E-value=0.00016 Score=60.57 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+++|+|++|||||||+|.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.99 E-value=0.00017 Score=59.36 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+++|+|++|+|||||+|.|.|-.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.96 E-value=0.0002 Score=56.87 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998743
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.94 E-value=0.00029 Score=60.25 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|+|+.|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 689999999999999999987654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.00021 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
|=.++|+|+.|+|||||+|.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998764
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.92 E-value=0.00023 Score=56.65 Aligned_cols=23 Identities=17% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|||||||++.+.+-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.91 E-value=0.00022 Score=58.83 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
+=.+||+|++|+|||||+|.|.|-
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 336899999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.00022 Score=60.47 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++||-|++|||||||.+.|.-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987765
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.00022 Score=59.61 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|+||||||||||++.|..-++
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999876654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.90 E-value=0.00023 Score=56.91 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|.+|||||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987643
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.90 E-value=0.00016 Score=58.90 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
-.++|||++|||||||++.|.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999997754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.87 E-value=0.00028 Score=58.77 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+.|+||||+|||||++.|..-++
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 4689999999999999999886554
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.86 E-value=0.00027 Score=58.90 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+-.+++|+||.||||||+.+.|+--|.
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 345899999999999999999987653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.86 E-value=0.0003 Score=58.53 Aligned_cols=27 Identities=37% Similarity=0.767 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++|-.+.|+||.||||||+.+.|+--+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 567789999999999999999998544
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.80 E-value=0.00029 Score=59.12 Aligned_cols=23 Identities=35% Similarity=0.729 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|+||||||||||++.|...++
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 77999999999999999877654
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.79 E-value=0.00018 Score=59.28 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhhc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+||+|.+|+|||||+|.|.|-.
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998753
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00039 Score=57.39 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=25.0
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
|++|+++.|.||+|||||||+.-++.-.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999988776544
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.00028 Score=58.95 Aligned_cols=28 Identities=18% Similarity=0.523 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++-.++.|+||.||||||+.+.|+.-|.
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999988664
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.75 E-value=0.0003 Score=57.57 Aligned_cols=25 Identities=12% Similarity=0.569 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.+.|+|++||||||+.+.|+--+.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577999999999999999987664
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.73 E-value=0.00034 Score=56.94 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|+|++||||||+.+.|+.-+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78899999999999999988774
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.73 E-value=0.00036 Score=56.99 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.|.|++||||||+++.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999999886
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.00019 Score=58.64 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
=.++|+|++++|||||+|.|.+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998854
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.66 E-value=0.0004 Score=58.06 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=25.2
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++++.++.|+||.||||||+.+.|+.-|.
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999999987654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.65 E-value=0.00037 Score=57.93 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.|+||.||||||+.+.|+--+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999986664
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.65 E-value=0.00041 Score=61.13 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|.+|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999854
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.63 E-value=0.00045 Score=63.15 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=28.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEE
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY 140 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~ 140 (346)
+.+..+.|.|+.|||||||++.|.+..+ +..=-|.+
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~-----~~~rivti 199 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISI 199 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEE
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhcc-----cccceeec
Confidence 3345589999999999999999999987 65444444
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.62 E-value=0.00046 Score=56.17 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|+|++||||||+.+.|+.-+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67889999999999999997775
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.59 E-value=0.00052 Score=56.16 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|+||.||||||+.+.|+--+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999977664
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.59 E-value=0.00051 Score=55.43 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|+.|||||||++.|.+-..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 488999999999999999987543
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.00056 Score=56.83 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.|+||.||||||..+.|+--|.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987553
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.53 E-value=0.00061 Score=56.78 Aligned_cols=24 Identities=13% Similarity=0.499 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++++|.+|||||||.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.00077 Score=61.17 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++||-|++|||||||.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 899999999999999999999885
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.49 E-value=0.00019 Score=57.62 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|++|+|||||+|.|.|-.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999854
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.47 E-value=0.00063 Score=56.17 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhhc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+||||+.+||||||+|.|.+.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999998754
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.46 E-value=0.00065 Score=56.39 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998753
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.45 E-value=0.00072 Score=55.71 Aligned_cols=24 Identities=29% Similarity=0.657 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|+||.||||||+.+.|+--|.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999997664
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.44 E-value=0.0021 Score=53.43 Aligned_cols=20 Identities=60% Similarity=0.845 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 019066 105 LLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~g 124 (346)
++|+|+.|||||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999998764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.44 E-value=0.00061 Score=56.64 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.-+|+|-|+.||||||+++.|...+.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445899999999999999999987664
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.42 E-value=0.00075 Score=57.07 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|-||+||||||+.+.|+--|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999997664
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.42 E-value=0.00069 Score=58.74 Aligned_cols=25 Identities=44% Similarity=0.527 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+.|.||+|||||||.+.|++-+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999999875
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.41 E-value=0.00078 Score=54.65 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.=.++|+|..|||||||++.|.+-
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998874
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.40 E-value=0.00088 Score=55.27 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
++-+.+.++|++||||||+.+-+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 556799999999999999998764
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.00086 Score=56.33 Aligned_cols=24 Identities=25% Similarity=0.639 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++|.||.||||||+.+.|+--|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999986654
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.35 E-value=0.00089 Score=56.18 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|+.|||||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.0027 Score=51.17 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999764
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.0012 Score=57.39 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=22.9
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
++++ +.+.++.|.|||.|||||++|.++=
T Consensus 35 i~l~-~~~~~~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 35 LNLS-PQRRMLIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp EEEC-SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEC-CCceEEEEeccCchhhHHHHHHHHH
Confidence 4444 2346899999999999999999853
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.0009 Score=61.20 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.-++||.||.|||||||++.|...+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998776
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.0009 Score=54.88 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|+||.||||||..+.|+--+.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999986654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.33 E-value=0.0014 Score=56.04 Aligned_cols=27 Identities=22% Similarity=0.635 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.+++++||+||||||.+==|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999998777777665
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.29 E-value=0.001 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|+||.||||||+.+.|+--+.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999987664
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.29 E-value=0.0011 Score=53.61 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|++|||||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998865
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.28 E-value=0.0031 Score=50.97 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|..|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997664
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.00081 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.+++|-|+-||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998775
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.0012 Score=53.59 Aligned_cols=21 Identities=33% Similarity=0.730 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|+.|||||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 378999999999999998875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0012 Score=53.32 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|++|||||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999987753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.13 E-value=0.0013 Score=55.57 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 019066 104 SLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~ 123 (346)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999874
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.13 E-value=0.0014 Score=55.46 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=23.5
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++|.++.|.||+|||||||..-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999999977653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.13 E-value=0.0014 Score=53.13 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 019066 105 LLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~g 124 (346)
++++|+.|||||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 89999999999999998765
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.12 E-value=0.0017 Score=56.08 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=22.4
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
|+++.+ +++.|.|||.+||||++|.+.=
T Consensus 30 di~~~~-~~~iiTGpN~~GKSt~lk~i~l 57 (224)
T d1ewqa2 30 DLEMAH-ELVLITGPNMAGKSTFLRQTAL 57 (224)
T ss_dssp EEEESS-CEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEeCC-cEEEEECCCccccchhhhhhHH
Confidence 444443 5899999999999999998763
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=96.12 E-value=0.0012 Score=53.70 Aligned_cols=21 Identities=29% Similarity=0.708 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|+.|||||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998865
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0044 Score=50.06 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|+.|+|||||++.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.10 E-value=0.0014 Score=61.53 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+||+|.+|+|||||+|.|.|...
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 389999999999999999999653
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.09 E-value=0.0016 Score=55.42 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=32.7
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
++|-++-|.|.+|||||||.+.|..-+... ...-.+.++|..+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~---~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh---cCceEEEEcchHHH
Confidence 688899999999999999999998654300 11235678887664
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.08 E-value=0.0014 Score=59.21 Aligned_cols=25 Identities=36% Similarity=0.818 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.-+.++||+|||||+|.++|+..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 3567899999999999999999875
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.06 E-value=0.0016 Score=54.38 Aligned_cols=25 Identities=40% Similarity=0.692 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.++|+||.||||||+.+.|+--|.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHC
Confidence 4688999999999999999987654
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.06 E-value=0.0016 Score=53.52 Aligned_cols=24 Identities=33% Similarity=0.735 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|+||.||||||+.+.|+--+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 477999999999999999987653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.04 E-value=0.0017 Score=52.37 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|++|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.0033 Score=50.74 Aligned_cols=21 Identities=48% Similarity=0.653 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0016 Score=54.81 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.+|+|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999998765
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.0017 Score=55.16 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=25.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++|-+|+|-|+-||||||+++.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999988775
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.03 E-value=0.0018 Score=55.76 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-.+.|.||+|+||||++++|+.-+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999998765
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.03 E-value=0.0016 Score=55.91 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++||+|..+||||||++.|.+-.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhc
Confidence 59999999999999999998764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0035 Score=50.74 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|.+|||||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997754
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.02 E-value=0.0018 Score=55.39 Aligned_cols=24 Identities=38% Similarity=0.689 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|.||+|+||||+.++|+.-+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 378999999999999999998887
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0018 Score=52.88 Aligned_cols=21 Identities=43% Similarity=0.838 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|+.|||||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998755
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.95 E-value=0.0017 Score=55.30 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|.||+|+||||++++|+.-+.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 378999999999999999998664
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.92 E-value=0.0019 Score=55.40 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.++.|.||.|+|||||++.++.-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 456899999999999999998766543
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0021 Score=52.83 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 019066 105 LLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~g 124 (346)
++|+|+.|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 88999999999999998864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.86 E-value=0.0019 Score=55.27 Aligned_cols=23 Identities=43% Similarity=0.756 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.+.||.|+||||+.+++++-+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999775
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0022 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|++|||||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 378999999999999998764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.86 E-value=0.0022 Score=52.59 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|.+|||||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0023 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988653
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.85 E-value=0.001 Score=59.66 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999998886
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.002 Score=54.71 Aligned_cols=22 Identities=36% Similarity=0.744 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhhc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+.|.||+|+||||++++++.-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999865
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0022 Score=51.95 Aligned_cols=21 Identities=43% Similarity=0.816 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|+.|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.0023 Score=51.60 Aligned_cols=21 Identities=48% Similarity=0.763 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++++|.+|||||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0028 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.721 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++++||+|+||||.+==|+..+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999988777776665
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0023 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.651 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|..|||||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0025 Score=54.22 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.9
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
|++|.++.|.||+|||||||.-.++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999999887764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.81 E-value=0.0037 Score=53.49 Aligned_cols=25 Identities=20% Similarity=0.534 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..+.|.||.|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 3789999999999999999999886
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0026 Score=51.54 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++|+|..|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 378999999999999999987643
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.0025 Score=53.82 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 019066 104 SLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~ 123 (346)
++||+|..||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 78999999999999999875
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.74 E-value=0.0027 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.4
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
+++|.++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999999977553
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.74 E-value=0.0031 Score=51.44 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=27.1
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..++|.+++|-|+=|||||||.|.++.-+.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 457999999999999999999999998775
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.74 E-value=0.0027 Score=51.19 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.72 E-value=0.0028 Score=53.94 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.+|+|=|+-||||||+++.|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999998776
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.71 E-value=0.0028 Score=51.05 Aligned_cols=21 Identities=33% Similarity=0.700 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988765
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.70 E-value=0.0033 Score=51.78 Aligned_cols=30 Identities=23% Similarity=0.576 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 136 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G 136 (346)
.+.|+|.+|+|||||++.+. +.+.. .||-|
T Consensus 4 KivllG~~~vGKTsll~r~~-f~~~~--~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR-IIHGQ--DPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHSC--CCCSS
T ss_pred EEEEECCCCCCHHHHHHHHh-cCCCC--CCeee
Confidence 57899999999999999994 43322 27877
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.68 E-value=0.0031 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.7
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
+++|+++.|.|++|+|||||+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999997543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.68 E-value=0.003 Score=50.62 Aligned_cols=20 Identities=30% Similarity=0.604 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 019066 105 LLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~g 124 (346)
++|+|..|+|||||++.+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0031 Score=55.42 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-+.|.||+|||||+|++.|+..+.
T Consensus 47 ~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEeeCCCCCCccHHHHHHHHHcC
Confidence 478999999999999999998775
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0057 Score=49.68 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++|+|.+|+|||||++.+..-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999887653
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.0034 Score=50.96 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 019066 105 LLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~g 124 (346)
++|+|++|||||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.66 E-value=0.0029 Score=54.16 Aligned_cols=28 Identities=21% Similarity=0.567 Sum_probs=21.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+--+++++||+|+||||.+==|+-.+.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999987655555554
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.66 E-value=0.0032 Score=53.07 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.7
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
+++|+++.|.|++|+|||||+--++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 79999999999999999999877764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.65 E-value=0.0035 Score=53.41 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...+++++||+|+||||.+--|+..+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345889999999999988877777665
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.0032 Score=50.74 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|..|||||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.60 E-value=0.0034 Score=53.47 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.5
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+++|.++.|.|++|||||||+.-++--.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987766544
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.58 E-value=0.002 Score=52.75 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-.++|+|++|||||||++.+.+-
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999988654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.57 E-value=0.0029 Score=55.16 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-+.|.||.|||||+|.+.|+.-..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 478999999999999999998765
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.57 E-value=0.0039 Score=56.65 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.-+++|.||.|||||||+..|...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence 345799999999999999999997664
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0035 Score=51.08 Aligned_cols=21 Identities=48% Similarity=0.797 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.51 E-value=0.0037 Score=54.59 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=26.9
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHhh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~g 124 (346)
|+++..=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 444544479999999999999999999877764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0036 Score=50.92 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 37899999999999999998754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0035 Score=50.92 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|..|+|||||++.+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.50 E-value=0.0032 Score=53.80 Aligned_cols=27 Identities=19% Similarity=0.552 Sum_probs=17.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.-.+++++||+|+||||.+==|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446899999999999988766666665
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0037 Score=51.23 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0036 Score=50.72 Aligned_cols=20 Identities=40% Similarity=0.770 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 019066 105 LLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~g 124 (346)
++|+|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.43 E-value=0.0049 Score=57.56 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.-.+.|.||+||||||++.++.....
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 455899999999999999999998765
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.0042 Score=50.18 Aligned_cols=21 Identities=52% Similarity=0.713 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++++|..|+|||||++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998874
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.39 E-value=0.0038 Score=51.91 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998775
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.36 E-value=0.0092 Score=48.16 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++++|..|||||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.35 E-value=0.0042 Score=54.65 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++..-+.|.||+|||||+|+++|++.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 3344488999999999999999999876
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.004 Score=52.75 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|.||+|+||||++++++.-+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 67899999999999999987654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.33 E-value=0.0053 Score=49.97 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCce
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ 137 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~ 137 (346)
.+.|||..|+|||||++-+..-.- |+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~-----~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHE-----AGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHS-----CCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC-----CCccE
Confidence 478999999999999998876655 66664
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.31 E-value=0.003 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.+.|+|++|+|||||++.+..-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998643
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.26 E-value=0.0043 Score=54.09 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|.||.|||||+|++.|+..+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 78999999999999999998664
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0031 Score=51.15 Aligned_cols=21 Identities=38% Similarity=0.721 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|+.|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.22 E-value=0.0044 Score=58.75 Aligned_cols=24 Identities=38% Similarity=0.851 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-+.+|||+|||||-|.+.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999886
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.20 E-value=0.0083 Score=49.71 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=24.8
Q ss_pred ceeeeEEecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 92 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 92 L~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
++..-+++ .|.-+.|.|+||+|||||.-.|.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 44466676 77889999999999999986654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.0053 Score=49.51 Aligned_cols=20 Identities=35% Similarity=0.743 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 019066 105 LLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~g 124 (346)
++|+|+.|+|||||++.+..
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.19 E-value=0.0054 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|..|+|||||++.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998754
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.15 E-value=0.0032 Score=51.11 Aligned_cols=20 Identities=50% Similarity=0.810 Sum_probs=8.6
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 019066 105 LLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~g 124 (346)
++|+|..|||||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999987764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.14 E-value=0.005 Score=51.14 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+||+|...+|||||++.|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998653
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0058 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|..|+|||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999998754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0063 Score=49.82 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.++++|..|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999977653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.006 Score=50.10 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999988653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.0052 Score=54.88 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=28.3
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
=+.|-+|+..+|+|++|+|||||+..|+.-..
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 36788999999999999999999999987554
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.01 E-value=0.012 Score=47.91 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|.+|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999986644
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.0047 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhhhc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+.|.||.|+||||+++.++.-+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 7899999999999999998765
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.99 E-value=0.0061 Score=54.40 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++||-|+.|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 89999999999999998886554
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.99 E-value=0.0057 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|.||.|+||||++++|+.-+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHhh
Confidence 67999999999999999998654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.92 E-value=0.0062 Score=53.21 Aligned_cols=29 Identities=28% Similarity=0.581 Sum_probs=24.1
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+..+.| +.|.||+|||||+|++.++....
T Consensus 35 ~~~~~g--iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 35 VKPPRG--ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCce--eEEecCCCCCchHHHHHHHHHhC
Confidence 334555 78999999999999999999765
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0071 Score=49.82 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|+.|+|||||++.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.81 E-value=0.0047 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
++.|.||.|+||||+++.++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHH
Confidence 466779999999999999998774
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.70 E-value=0.0065 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.++++|.-.||||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999954
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.66 E-value=0.007 Score=53.69 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
=-+++|+||-++|||||+|.|.|..
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEEECCCCCCHHHHHHHHcCCC
Confidence 3589999999999999999999854
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.0091 Score=53.78 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|...+.++||+|+|||.|.+.|+..+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 344688999999999999999999875
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.61 E-value=0.012 Score=47.83 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 136 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G 136 (346)
.+.|+|..|+|||||++.+..-.-. +.||-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGS--GVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSS--CCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCceee
Confidence 4789999999999999998665432 337766
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.58 E-value=0.0092 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++||.|+-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.57 E-value=0.0078 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
.+++||.-.||||||+|+|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.55 E-value=0.0078 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-+||||...||||||+|+|.|.-.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---
T ss_pred cEeEECCCCCCHHHHHHHHHCCCC
Confidence 389999999999999999988643
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.012 Score=51.73 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=31.5
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECcee
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV 144 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~ 144 (346)
=|++|.++-|.||+|||||||+-.++..... +..--+++|.+.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~----~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR----EGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHc----CCCEEEEEcccc
Confidence 3789999999999999999998777766551 333345666543
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.49 E-value=0.011 Score=48.92 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=22.7
Q ss_pred eeeeEEecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 93 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 93 ~~isl~i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
+..-+++ .|.=+.|.|+||+|||||.-.|.
T Consensus 6 H~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 6 HGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 3355554 56789999999999999886544
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.011 Score=51.14 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
.+|+++.|.|++|+|||||+-.|+--
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46999999999999999999777643
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.43 E-value=0.01 Score=54.55 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=27.8
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.++++..+.+.||.|+|||||.++|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 458888999999999999999999999987
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.40 E-value=0.01 Score=50.37 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 136 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G 136 (346)
.+.|+|.+|+|||||++-+..-.. .||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~----~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHV----VLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC----CCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc----CCCCC
Confidence 578999999999999998753221 27766
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.32 E-value=0.0065 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.666 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-+.|+||.|+|||||++.+.++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCC
Confidence 589999999999999999999986
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.17 E-value=0.012 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-+||+|..++|||||++.|...
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999644
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.03 E-value=0.013 Score=51.97 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhccC-CCC------CCCCceEEECc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFEN-DKF------ASERAQVTYNS 142 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~~-~~~------~p~~G~I~~~g 142 (346)
-.+||||...||||||+|+|.+--.. ... .|.-|.|.+..
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 35999999999999999999975321 111 24568777654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=93.81 E-value=0.027 Score=50.89 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=30.7
Q ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCceEEECceeCC
Q 019066 97 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 146 (346)
Q Consensus 97 l~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~I~~~g~~i~ 146 (346)
...++| ++.++||.|||||.|.+.|++-.. ..-.-+.++|.++.
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~-----~~~~~~~~~~~~~~ 162 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPL 162 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHH-----TTSCCEEEEBSCSS
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhc-----CCCCeEEEEhhHhh
Confidence 345555 667789999999999999999864 22223556665543
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.74 E-value=0.022 Score=50.20 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=31.2
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhccCCCCCCCCce-EEECcee
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQ-VTYNSSV 144 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~~~~~~p~~G~-I~~~g~~ 144 (346)
=++.|.++-|.||+|||||||+-.++.... ...|. |++|.+.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q-----~~g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ-----AAGGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH-----HTTCEEEEEESSC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh-----cCCCEEEEEECCc
Confidence 478999999999999999999766666554 33444 5555543
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.73 E-value=0.023 Score=50.19 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=26.3
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
=+.+-+|+.++|+|++|+|||||+..|+.-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 467899999999999999999997777654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.73 E-value=0.015 Score=51.25 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhh
Q 019066 104 SLLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~g 124 (346)
.++|+|+.|||||||+..|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 489999999999999999943
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.018 Score=48.70 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+++|=|+-||||||+++.|.--+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999998775
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.56 E-value=0.023 Score=49.97 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=26.4
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|+.|.++-|.||+|||||||+-.++....
T Consensus 54 ip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 54 IPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 68999999999999999999988887765
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.53 E-value=0.029 Score=45.88 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=21.1
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHH
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L 122 (346)
.-+++ .|.=+.|.|+||+|||||.-.+
T Consensus 9 ~~v~~-~g~gvli~G~sg~GKS~la~~l 35 (169)
T d1ko7a2 9 VLVDV-YGVGVLITGDSGIGKSETALEL 35 (169)
T ss_dssp EEEEE-TTEEEEEEESTTSSHHHHHHHH
T ss_pred EEEEE-CCEEEEEEeCCCCCHHHHHHHH
Confidence 44444 6778999999999999987544
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.50 E-value=0.019 Score=52.98 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCHHHHHHH-HhhhccCCCCCCCCceEEECc
Q 019066 103 TSLLLIGPKGSGKSSLVNR-ISKVFENDKFASERAQVTYNS 142 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~-L~gl~~~~~~~p~~G~I~~~g 142 (346)
..+.|+|++|||||++++. |..++. ...+-|.+|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~-----~g~~~iiiD~ 86 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLL-----RGDRMVIVDP 86 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH-----TTCEEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHh-----CCCCEEEEeC
Confidence 4689999999999999864 445554 3334555553
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.28 E-value=0.02 Score=50.70 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 019066 104 SLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~ 123 (346)
.+||+|+.|||||||+..|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999995
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.26 E-value=0.025 Score=47.13 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.=-+||+|.-.+|||||++.|.+...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 3444589999999999999999988654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.25 E-value=0.023 Score=49.87 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhccC------CCCCCCCceEEECc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFEN------DKFASERAQVTYNS 142 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~~------~~~~p~~G~I~~~g 142 (346)
.+||||-..+|||||+++|.+.-.. ....|.-|.|.+..
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d 48 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence 5899999999999999999965431 11125568877654
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=93.10 E-value=0.023 Score=52.15 Aligned_cols=29 Identities=38% Similarity=0.814 Sum_probs=23.8
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++++ .+.++||+|||||-|.|.|+.+..
T Consensus 65 ~~p~~-niLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 65 ELSKS-NILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp TCCCC-CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cCCCc-ceeeeCCCCccHHHHHHHHHhhcc
Confidence 34556 467789999999999999998875
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=93.08 E-value=0.024 Score=47.38 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-+||+|.-++|||||++.|.+...
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~~ 28 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKILA 28 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHH
Confidence 379999999999999999987653
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.024 Score=48.24 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhh
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl 125 (346)
-++.|.|.=|||||||++-+..-
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEeeCCCCCHHHHHHHHHhc
Confidence 36889999999999999988763
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=0.032 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|.||+|+||||+.++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHhc
Confidence 467899999999999999988765
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.26 E-value=0.039 Score=48.28 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhhh
Q 019066 102 TTSLLLIGPKGSGKSSLVNRISKV 125 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L~gl 125 (346)
..+++|+|.-|.|||||.+.+..-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988653
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.24 E-value=0.036 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.|.||.|+||||+.+.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHhcc
Confidence 488999999999999999998764
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.23 E-value=0.036 Score=49.73 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
|.-.+.++||+|+|||.|.+.|+..+-
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchHHHHHHHHHHHhc
Confidence 344688999999999999999999763
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.03 E-value=0.038 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+.|.||+|||||-|+++++.-..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~~ 61 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEAK 61 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 68999999999999999987664
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=91.82 E-value=0.031 Score=42.36 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=20.8
Q ss_pred ecCCcEEEEEcCCCCCHHHHH-HHHhhhc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLV-NRISKVF 126 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl-~~L~gl~ 126 (346)
+++|+.+.|..|+|||||..+ ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 468999999999999999544 4444443
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=91.63 E-value=0.044 Score=48.33 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=26.8
Q ss_pred eEEecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 96 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 96 sl~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
=+.|-+|+.++|+|++|+|||+|+..+.....
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~ 92 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQ 92 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhc
Confidence 46889999999999999999999976554443
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.47 E-value=0.048 Score=47.85 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 103 TSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 103 e~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.-+.||||+|+|||++++-++..+.
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHHH
Confidence 3578999999999999999998765
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.36 E-value=0.09 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|.|=|+-||||||+++.|..-+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCccCCHHHHHHHHHHHhc
Confidence 578889999999999999999886
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.30 E-value=0.055 Score=45.22 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
-+.||||+|+|||+++.-|+.-..
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 478999999999999999998765
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.67 E-value=0.045 Score=48.49 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=24.9
Q ss_pred eeEEecCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 95 SDYDVPKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 95 isl~i~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
.=+.+-+|+.++|+|++|+|||+|+.-+.
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 35788999999999999999999976544
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.57 E-value=0.063 Score=45.34 Aligned_cols=20 Identities=45% Similarity=0.732 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 019066 104 SLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~ 123 (346)
-++++|..++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 48999999999999998884
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=90.38 E-value=0.078 Score=44.51 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=26.9
Q ss_pred ecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+++--++.|.||.++|||+++.+|+.++.
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 57778999999999999999999999986
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=90.37 E-value=0.086 Score=45.91 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+-.++|||-..+|||||+|.|.|-..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEEecCccchhhhhhhhhccce
Confidence 445699999999999999999999654
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=90.36 E-value=0.08 Score=44.90 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHhh
Q 019066 105 LLLIGPKGSGKSSLVNRISK 124 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~g 124 (346)
++++|...+|||||+..|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999954
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.98 E-value=0.085 Score=47.60 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
+|+|=|+-||||||+++.|...+.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999998876
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.42 E-value=0.15 Score=39.20 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
++|=++.+.|-+|||||||.+.|.--+
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l 30 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTF 30 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 577789999999999999999995544
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.93 E-value=0.089 Score=47.44 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.|+|=|+-||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 488999999999999999987664
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.87 E-value=0.12 Score=45.00 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=26.4
Q ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 98 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 98 ~i~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..++--++.|.||.++|||||+++|..++.
T Consensus 100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg 129 (267)
T d1u0ja_ 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 346667999999999999999999999984
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=88.67 E-value=0.098 Score=40.00 Aligned_cols=21 Identities=38% Similarity=0.412 Sum_probs=16.7
Q ss_pred CCcEEEEEcCCCCCHHHHHHH
Q 019066 101 KTTSLLLIGPKGSGKSSLVNR 121 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~ 121 (346)
.-+...|.+|+|||||+++-.
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~ 27 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPA 27 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHH
Confidence 346678899999999997643
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.19 E-value=0.12 Score=44.21 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 019066 104 SLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 104 ~iaIvGpnGsGKSTLl~~L~ 123 (346)
-++|+|..++|||||+..|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999998885
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=88.10 E-value=0.092 Score=45.43 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=21.7
Q ss_pred ecCCcEEEEEcCCCCCHHH--HHHHHhhhcc
Q 019066 99 VPKTTSLLLIGPKGSGKSS--LVNRISKVFE 127 (346)
Q Consensus 99 i~~Ge~iaIvGpnGsGKST--Ll~~L~gl~~ 127 (346)
+.+|+.+.|.+|+|||||+ |..++....+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~ 36 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK 36 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999996 3355544443
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=87.85 E-value=0.12 Score=46.08 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=17.9
Q ss_pred cCCcEEEEEcCCCCCHHHHH
Q 019066 100 PKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl 119 (346)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 56899999999999999965
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=87.65 E-value=0.12 Score=46.16 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=17.6
Q ss_pred cCCcEEEEEcCCCCCHHHHH
Q 019066 100 PKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl 119 (346)
+.|++..+.|.||+|||||-
T Consensus 12 ~~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 12 KEGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TTCCEEEEEECTTSCHHHHT
T ss_pred CCCCEEEEEccCCCCccccc
Confidence 35889999999999999964
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.07 E-value=0.11 Score=44.53 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 019066 105 LLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~ 123 (346)
++|+|..++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHHH
Confidence 8999999999999999883
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=86.96 E-value=0.13 Score=44.97 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=16.7
Q ss_pred EEEEEcCCCCCHHHH-HHHHhhhc
Q 019066 104 SLLLIGPKGSGKSSL-VNRISKVF 126 (346)
Q Consensus 104 ~iaIvGpnGsGKSTL-l~~L~gl~ 126 (346)
.+.|.|+.||||||. +..+..++
T Consensus 26 ~~lV~g~aGSGKTt~l~~ri~~ll 49 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVLTHRIAYLM 49 (318)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEecCCccHHHHHHHHHHHHH
Confidence 577999999999965 44444444
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.67 E-value=0.12 Score=46.65 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 019066 105 LLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~ 123 (346)
+||+|+.|+|||||+..|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999995
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.52 E-value=0.14 Score=43.07 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=18.4
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHh
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRIS 123 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~ 123 (346)
-.|+-+.|+.|+|+|||+..-+..
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHHHH
Confidence 356778899999999997654433
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=86.29 E-value=0.15 Score=43.89 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHH-HHHHhhhcc
Q 019066 104 SLLLIGPKGSGKSSL-VNRISKVFE 127 (346)
Q Consensus 104 ~iaIvGpnGsGKSTL-l~~L~gl~~ 127 (346)
-+.|+|+.||||||. +..+.-++.
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ll~ 40 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAHLIR 40 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHHHHH
Confidence 478999999999964 555555543
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.89 E-value=0.19 Score=45.02 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=18.1
Q ss_pred cCCcEEEEEcCCCCCHHHHH
Q 019066 100 PKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl 119 (346)
+.|++..+.|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 47888999999999999987
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=85.64 E-value=0.22 Score=49.08 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+..+.+.|.|+||||||+-.|.|+..+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999887765
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.15 E-value=0.19 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhhhcc
Q 019066 105 LLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 105 iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
..||||+|+|||+++.-|+.-..
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i~ 68 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRIV 68 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHHHHH
Confidence 68899999999999998776443
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=85.03 E-value=0.31 Score=38.06 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHH-HHHHHhhhcc
Q 019066 102 TTSLLLIGPKGSGKSS-LVNRISKVFE 127 (346)
Q Consensus 102 Ge~iaIvGpnGsGKST-Ll~~L~gl~~ 127 (346)
|.+..|+||=.||||| |++.+.....
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~~~ 28 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRLEY 28 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHHHH
Confidence 6778899999999999 7777766553
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=84.98 E-value=0.25 Score=48.96 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+.+.+.|.|+||||||.-.|.|+..+-
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999999988764
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=84.59 E-value=0.38 Score=43.50 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=17.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHH
Q 019066 102 TTSLLLIGPKGSGKSSLVNRI 122 (346)
Q Consensus 102 Ge~iaIvGpnGsGKSTLl~~L 122 (346)
+.+..|.||.|+||||++..+
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHH
Confidence 569999999999999987543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=84.10 E-value=0.26 Score=42.13 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...-+.|.||.|+||+++.+.|...-.
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~ 48 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKLSD 48 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 345689999999999999999976543
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=83.85 E-value=0.3 Score=48.34 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=24.0
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVF 126 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~ 126 (346)
+..+.+.|-|+||||||+-.|.|+..+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999988776
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=83.22 E-value=0.32 Score=48.81 Aligned_cols=28 Identities=29% Similarity=0.565 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...+.+.|.|+||||||+-.+.|+..+-
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL~ 148 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYFA 148 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999998887763
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.28 E-value=0.35 Score=39.89 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 101 KTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 101 ~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
.+-.+.|.||+|+||||+.+.++....
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~ 40 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVE 40 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 455789999999999999999998765
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.26 E-value=0.18 Score=41.25 Aligned_cols=20 Identities=35% Similarity=0.443 Sum_probs=16.2
Q ss_pred cCCcEEEEEcCCCCCHHHHH
Q 019066 100 PKTTSLLLIGPKGSGKSSLV 119 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl 119 (346)
..|.-+.|..|+|||||+..
T Consensus 38 ~~~~~~il~apTGsGKT~~a 57 (202)
T d2p6ra3 38 FSGKNLLLAMPTAAGKTLLA 57 (202)
T ss_dssp TTCSCEEEECSSHHHHHHHH
T ss_pred HcCCCEEEEcCCCCchhHHH
Confidence 34667889999999999863
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=81.88 E-value=0.4 Score=47.57 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=24.6
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...+.+.|.|+||||||+-.+.|+..+-
T Consensus 92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~ 119 (730)
T d1w7ja2 92 ERNQSIIVSGESGAGKTVSAKYAMRYFA 119 (730)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999988763
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=81.54 E-value=0.35 Score=48.46 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCCHHHHHHHHhhhcc
Q 019066 100 PKTTSLLLIGPKGSGKSSLVNRISKVFE 127 (346)
Q Consensus 100 ~~Ge~iaIvGpnGsGKSTLl~~L~gl~~ 127 (346)
...+.+.|-|+||||||.-.|.|+..+-
T Consensus 119 ~~nQ~IiisGESGaGKTe~~K~il~yL~ 146 (789)
T d1kk8a2 119 RENQSCLITGESGAGKTENTKKVIMYLA 146 (789)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4569999999999999999888888764
|