Citrus Sinensis ID: 019077

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MMAAALLNGSRCSSGFRCQNFAKEPTTSLPKTRPFPMPLKAFSSKGSSTSTSAKLKSSLMPSLFGGGSVIKKKEINVLSPDITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGKLSCLYHNDY
Secondary Structure (PSIPRED)
cccHHHcccccccccEEEcccccccccccccccccccccccccccccccccHHHHccccccccccccEEEEccccEEEcccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccHHHHHHccccccccccccEEEEEEEccccccccccccccEEEEEEEEEccccEEEEEEEccccccccEEccEEEEcccccHHHHHHHHHHHccccEEEEEEEEEEEEEccccccEEEEEEEEEEEcccEEEccccccccEEEEEcHHHHcccccccccHHHHHHHHHHHHHHccccccEEEEEccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccccccccEEccccccccccccccccccccccccccccccccccHccHHcccHHHccccccccccccEEcccccccccccccEccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHcccEEEcccccEEEEEEEcccccccccccccEEEEEEEEEEEcccEEEEEEEcccccccccEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccEEEEEEEccccccccccHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHccccccccEEccccccccEEEEEEccc
Coil and Loop (DISEMBL)
mmaaallngsrcssgfrcqnfakepttslpktrpfpmplkafsskgsststsaklksslmpslfgggsvikkkeinvlspditapifvpefldpfddeydgviinpenlpssANAFVSALRASLSnwklkgkkgVWLKILSKQadlvpiaiqegfsyhhaepgyvMLTYwipvepcmlpgspshqigvggfvmndKREVLVVKekcprscsgmwkiptgyinksedLFSGAVREvkeetgvdTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAkwmpleefvkqpfyleddmsRKVIDICIKAYDDRFNGFIAHELASKldgklsclyhndy
Flexible Loop (DISEMBL)
mmaaallngsrcssgfrcqnfakepttslpktrpfPMPLKAFSSKGSSTSTSAKLKSSLMPSLFGGGSVIKKKEINVLSPDITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKekcprscsgmwkiptgyinkseDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHElaskldgklsclyhndy
Low Complexity Region (SEG)
MMAAALLNGSRCSSGFRCQNFAKEPTTSLPKTRPFPMPlkafsskgsststsaklkssLMPSLFGGGSVIKKKEINVLSPDITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNwklkgkkgvwlkILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGKLSCLYHNDY
Disordered region (IsUnstruct)
**************************************************************LFGGGSVIKKKEINVLSPDITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGKLSCLY****
Disordered Region (DISOPRED)
**********RCSSGFRCQNFAKEPTTSLPKTRPFPMPLKAFS*********************************************PEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGKLSCLYHNDY
Disordered Region (DISEMBL)
***********CSSGFRCQNFAKEPTTSLPKTRPFPMPLKAF**************SSLMPSLFGGGSVIKKKEINVLSPDITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGKLSCLYHNDY
Disordered Region (DISPRO)
*********SRCSSGFRCQNFAKEPTTSLPKTRPFPMPLKA***************SSLMPSLFGGGSVIKKKEINVLSPDITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGKLSCLYHNDY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMAAALLNGSRCSSGFRCQNFAKEPTTSLPKTRPFPMPLKAFSSKGSSTSTSAKLKSSLMPSLFGGGSVIKKKEINVLSPDITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGKLSCLYHNDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
Q8L7W2	369	Nudix hydrolase 8 OS=Arab	yes	no	0.849	0.796	0.563	7e-92
Q94B74	278	Nudix hydrolase 2 OS=Arab	no	no	0.676	0.841	0.495	2e-63
Q6NPD7	277	Nudix hydrolase 10 OS=Ara	no	no	0.708	0.884	0.450	5e-58
Q9SJC6	302	Nudix hydrolase 5 OS=Arab	no	no	0.693	0.794	0.428	2e-54
Q9SU14	282	Nudix hydrolase 7 OS=Arab	no	no	0.728	0.893	0.420	5e-53
Q9SJC4	283	Nudix hydrolase 6 OS=Arab	no	no	0.728	0.890	0.441	4e-52
P53370	316	Nucleoside diphosphate-li	yes	no	0.708	0.775	0.329	2e-32
P70563	313	Nucleoside diphosphate-li	yes	no	0.705	0.779	0.319	3e-30
Q8CH40	313	Nucleoside diphosphate-li	yes	no	0.803	0.888	0.301	2e-29
P13420	217	Nucleoside diphosphate-li	N/A	no	0.505	0.806	0.376	3e-28

>sp|Q8L7W2|NUDT8_ARATH Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2

 Score =  337 bits (864), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 220/307 (71%), Gaps = 13/307 (4%)

Query: 48  STSTSAKLKSSLMPSLFGGGSV-------IKKKEINVLSPDI-TAPIFVPEFLDPFDDEY 99
           + S+S+  KS     ++GGGS+        K   +N+ S  + ++ +     LD +DDEY
Sbjct: 47  AISSSSNTKSQF---VYGGGSIAATSDSGYKMNGVNLKSRTLMSSAVKERSLLDAYDDEY 103

Query: 100 DGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHH 159
            GVI++   LPS+  AF S LRASLS+W+ KGKKGVWLK+  +Q++LVPIAI+EGF YHH
Sbjct: 104 GGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKLPVEQSELVPIAIKEGFEYHH 163

Query: 160 AEPGYVMLTYWIPVE-PCMLPGSPSHQIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP 217
           AE GYVMLTYWIP E P MLP + SHQ+GVGGFV+N  +EVLVV+EK C  S +G+WK+P
Sbjct: 164 AEKGYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGLWKLP 223

Query: 218 TGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEI 277
           TG+IN+SE++FSGAVREVKEETGVDT F E++AFRH H VAFEKSDL F+CML+PLS +I
Sbjct: 224 TGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRHAHNVAFEKSDLFFICMLRPLSDKI 283

Query: 278 TIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGK 337
            I   EI+AAKWMPL EFV+QP    D M ++VI+IC      R+ G   H L S  DGK
Sbjct: 284 IIDALEIKAAKWMPLAEFVEQPMIRGDKMFKRVIEICEARLSHRYCGLSPHRLVSTFDGK 343

Query: 338 LSCLYHN 344
            S LY+N
Sbjct: 344 PSSLYYN 350

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q94B74|NUDT2_ARATH Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1

 Score =  243 bits (620), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 155/236 (65%), Gaps = 2/236 (0%)

Query: 91  FLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIA 150
            L    D+Y GV+    + P   + F + LR+SLS W L+GKKGVW+K+  +   L   A
Sbjct: 19  LLPSVQDKYGGVMTEMTH-PMDPSLFSTLLRSSLSTWTLQGKKGVWIKLPKQLIGLAETA 77

Query: 151 IQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPR-S 209
           ++EGF +HHAE  Y+ML YWIP E   LP + SH++G+G FV+N  +EVLVV+EK  R  
Sbjct: 78  VKEGFWFHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVINHNKEVLVVQEKTGRFQ 137

Query: 210 CSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCM 269
             G+WK PTG +N+ ED+  G+VREVKEETGVDT F +++AFR  H   F KSDL FVCM
Sbjct: 138 GQGIWKFPTGVVNEGEDIHDGSVREVKEETGVDTEFDQILAFRQTHKAFFGKSDLFFVCM 197

Query: 270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGF 325
           LKPLS EI   E EI+AA+WMP EE++ QPF    ++ R + DIC    +  + GF
Sbjct: 198 LKPLSLEINAQESEIEAAQWMPWEEYINQPFVQNYELLRYMTDICSAKTNGDYEGF 253

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q6NPD7|NUD10_ARATH Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT10 PE=1 SV=1

 Score =  224 bits (572), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 114/253 (45%), Positives = 159/253 (62%), Gaps = 8/253 (3%)

Query: 94  PF-DDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQ 152
           PF DD+Y GVI+  +  P     FV+ALR S   W+L+GKKGVWL +     +LV  A++
Sbjct: 21  PFVDDDYGGVIVEMKT-PMDTKNFVAALRDSFEQWRLQGKKGVWLNLPLSHVNLVEPAVK 79

Query: 153 EGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSC-S 211
           EGF YHHAEP Y+ML YWIP     +P + SH++ VG  V+N  +E     EK    C S
Sbjct: 80  EGFRYHHAEPTYLMLVYWIPEAESTIPLNASHRVRVGAVVLNHNKE-----EKYGSLCGS 134

Query: 212 GMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLK 271
           G+WKIPTG +++ E++F+ A+REVKEETG+DT FLE++AF   H   F KSDL FVC+L+
Sbjct: 135 GIWKIPTGVVDEGEEIFAAAIREVKEETGIDTEFLEILAFCQTHESFFAKSDLFFVCLLR 194

Query: 272 PLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELA 331
           P SF+I   + EI+AA+WM  E+   QP   ++D+ + +  IC    +  ++GF    + 
Sbjct: 195 PTSFDIQKQDLEIEAAQWMRFEDSASQPITHKNDLFKDIHHICSMKMEKSYSGFSKKPIT 254

Query: 332 SKLDGKLSCLYHN 344
           +  D KL  LY N
Sbjct: 255 TFFDDKLGYLYLN 267

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9SJC6|NUDT5_ARATH Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5 PE=2 SV=3

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/245 (42%), Positives = 161/245 (65%), Gaps = 5/245 (2%)

Query: 87  FVPEFLDPFDDEYDGVIINPENLPS-SANAFVSALRASLSNWKLKGKKGVWLKILSKQAD 145
           F    LD  +D + G ++N   + S +   F S L  SL  WK +GKKG+W+K+ S+ + 
Sbjct: 25  FEISLLDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIWIKLPSELSS 84

Query: 146 LVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEK 205
           LV  AI++GF+YHHAE  YVMLT+W+P  P  LP + SH+IG+G FV+N   E+LVV+E 
Sbjct: 85  LVDTAIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKNGEMLVVQEN 144

Query: 206 CPR-SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE-KSD 263
                   +WK+PTG I + E +++GAVREVKEET +D  F+E+++F   H   ++ K+D
Sbjct: 145 SGYFKDKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFVEVLSFMESHQAVWQRKTD 204

Query: 264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE--DDMSRKVIDICIKAYDDR 321
           + FVC L+  +FEI   + EI AAKWMP+EE+V QP++ +  ++M + + +IC+K   ++
Sbjct: 205 IFFVCELEARTFEIQKQDSEIHAAKWMPVEEYVNQPYHNKEGNEMFKLIANICLKRSREK 264

Query: 322 FNGFI 326
           + GF+
Sbjct: 265 YTGFV 269

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SU14|NUDT7_ARATH Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1

 Score =  208 bits (529), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 164/257 (63%), Gaps = 5/257 (1%)

Query: 91  FLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIA 150
            L+   D YDGV +     P  +  F  +LRASLS+W+ +GKKG+W+K+    A+LV  A
Sbjct: 10  LLEGETDNYDGVTVTMVE-PMDSEVFTESLRASLSHWREEGKKGIWIKLPLGLANLVEAA 68

Query: 151 IQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMN-DKREVLVVKEKCP-R 208
           + EGF YHHAEP Y+ML  WI   P  +P + SH +G G  V+N + +EVLVV+E+    
Sbjct: 69  VSEGFRYHHAEPEYLMLVSWISETPDTIPANASHVVGAGALVINKNTKEVLVVQERSGFF 128

Query: 209 SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVH-LVAFEKSDLLFV 267
               +WK+PTG IN+ ED+++G  REV+EETG+   F+E++AFR  H  +  +K+D+ F+
Sbjct: 129 KDKNVWKLPTGVINEGEDIWTGVAREVEEETGIIADFVEVLAFRQSHKAILKKKTDMFFL 188

Query: 268 CMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIA 327
           C+L P S++IT  + EI  AKWMP++E+V QP+  +++M + + +IC K  ++ + GF A
Sbjct: 189 CVLSPRSYDITEQKSEILQAKWMPIQEYVDQPWNKKNEMFKFMANICQKKCEEEYLGF-A 247

Query: 328 HELASKLDGKLSCLYHN 344
               +   GK S +Y N
Sbjct: 248 IVPTTTSSGKESFIYCN 264

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use both NADH and ADP-ribose as substrates, but not 8-oxo-dGTP, cyclic ADP-ribose, GDP-manose, UDP-glucose, ATP, or GTP. Exerts negative control of EDS1 signaling.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9SJC4|NUDT6_ARATH Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6 PE=1 SV=1

 Score =  205 bits (521), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 114/258 (44%), Positives = 159/258 (61%), Gaps = 6/258 (2%)

Query: 91  FLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIA 150
            L    D Y GV +N    P +   FV  LRASL  W  +G KG+WLK+     +L+  A
Sbjct: 10  LLQGVPDNYGGVKVNLTE-PMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDNLIAPA 68

Query: 151 IQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDK-REVLVVKE-KCPR 208
             EGF  HHAE  Y MLT WI   P  LP + SH+IGVG FV+N K +EVLVV+E     
Sbjct: 69  KAEGFVCHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHF 128

Query: 209 SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE-KSDLLFV 267
             +G+WK+PTG + + E+++ GA+REV+EETG+ T F+E++AFR  H    E K+D+ F+
Sbjct: 129 KGTGVWKLPTGVVKEGENIWEGALREVEEETGIKTKFVEVLAFRESHQAFLEIKTDIFFL 188

Query: 268 CMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDD-RFNGFI 326
           C L+P +FEI   + EI AAKWMP+EE+V QP+  + ++ R + +IC+K   +  + GF 
Sbjct: 189 CELEPTTFEIKKQDSEILAAKWMPIEEYVNQPWNQKKELFRFMANICLKRLQEMEYMGF- 247

Query: 327 AHELASKLDGKLSCLYHN 344
           +  L +   GK S LY N
Sbjct: 248 SKVLTTTSSGKESYLYCN 265

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives. In vitro, it can use both NADH and ADP-ribose as substrates; however the relevance of such substrates in vivo is unclear.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P53370|NUDT6_HUMAN Nucleoside diphosphate-linked moiety X motif 6 OS=Homo sapiens GN=NUDT6 PE=1 SV=2

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 128/258 (49%), Gaps = 13/258 (5%)

Query: 97  DEYDGVIINPENLPS----SANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQ 152
           D + G+ +    L +     A AF   L+A++  W+ +G+  VWL I   Q+  +  A  
Sbjct: 51  DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAAS 110

Query: 153 EGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDK-REVLVVKEKCPRSCS 211
            GF +HHAE     LT W+   P  LPG  SHQ+GV G V ++  R++LVV+++      
Sbjct: 111 LGFCFHHAESDSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQDR--NKLK 168

Query: 212 GMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV--AFEKSDLLFVCM 269
            MWK P G     ED+   AVREV EETG+ + F  +++ R  H    AF KSD+  +C 
Sbjct: 169 NMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICR 228

Query: 270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFN--GFIA 327
           LKP SF I   ++E    +WM L +  K        ++ +V  + +  Y + F+      
Sbjct: 229 LKPYSFTINFCQEECLRCEWMDLNDLAKTEN--TTPITSRVARLLLYGYREGFDKIDLTV 286

Query: 328 HELASKLDGKLSCLYHND 345
            EL +   G    LYH +
Sbjct: 287 EELPAVYTGLFYKLYHKE 304

May contribute to the regulation of cell proliferation.

Homo sapiens (taxid: 9606)

>sp|P70563|NUDT6_RAT Nucleoside diphosphate-linked moiety X motif 6 OS=Rattus norvegicus GN=Nudt6 PE=1 SV=1

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 125/257 (48%), Gaps = 13/257 (5%)

Query: 97  DEYDGVIINPENLPS----SANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQ 152
           D + G+ ++     +     A AF   L+A++  W+ +G+   WL I   Q+  +  A  
Sbjct: 48  DRFGGISVHLSRHRTLHRLDAAAFRRLLQAAIQQWRAEGRIAAWLHIPILQSHFIAPAAS 107

Query: 153 EGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMN-DKREVLVVKEKCPRSCS 211
            GF +HHAEP    LT W+   P  LPG  +HQ+GV G V +   R+VLVV+++      
Sbjct: 108 LGFCFHHAEPHLSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQDR--NKLK 165

Query: 212 GMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV--AFEKSDLLFVCM 269
            MWK P G     ED+   AVREV EETGV + F  +++ R  H    AF  SD+  +C 
Sbjct: 166 NMWKFPGGLSEPGEDIGDTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLICR 225

Query: 270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFN--GFIA 327
           L+P SF I   ++E    +WM LE   +        ++ +V  + +  + + F+      
Sbjct: 226 LQPRSFTINFCQQECLKCEWMDLESLARTKH--TTPITSRVARLLLYGHREGFDKIDLSM 283

Query: 328 HELASKLDGKLSCLYHN 344
            EL +   G    LYH 
Sbjct: 284 EELPAVYTGLFYKLYHR 300

May contribute to the regulation of cell proliferation.

Rattus norvegicus (taxid: 10116)

>sp|Q8CH40|NUDT6_MOUSE Nucleoside diphosphate-linked moiety X motif 6 OS=Mus musculus GN=Nudt6 PE=2 SV=1

 Score =  130 bits (326), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 135/292 (46%), Gaps = 14/292 (4%)

Query: 63  LFGGGSVIKKKEINVLSPDITAPIFVPEFLDPFDDEYDGVIINPENLPS----SANAFVS 118
           L+ GG+ ++       S  +  P      L    D + GV ++     +     A AF  
Sbjct: 15  LYAGGARLRPGR-RTASGGLETPGSCGAELQGELDRFGGVSVHLSRHHTLHGLDAAAFRR 73

Query: 119 ALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCML 178
            L+A++  W+  G+   WL I   Q+  +  A   GF +HHA+P    LT W+   P  L
Sbjct: 74  LLQAAIQQWRSDGRIAAWLHIPILQSHFIAPAASLGFCFHHAKPHSSTLTLWLGEGPSRL 133

Query: 179 PGSPSHQIGVGGFVMN-DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKE 237
           PG  +HQ+GV G V +   R+VLVV+++       MWK P G     ED+   AVREV E
Sbjct: 134 PGYATHQVGVAGAVFDVSTRKVLVVQDR--NKLKNMWKFPGGLSEPGEDIADTAVREVFE 191

Query: 238 ETGVDTIFLEMVAFRHVHLV--AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEF 295
           ETGV + F  +++ R  H    AF  SD+  VC L+P SF I   ++E    +W+ LE  
Sbjct: 192 ETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLVCRLQPRSFTINFCQQECLKCEWIDLENL 251

Query: 296 VKQPFYLEDDMSRKVIDICIKAYDDRFN--GFIAHELASKLDGKLSCLYHND 345
            +        ++ +V  + +    + F+       EL +   G    LYH +
Sbjct: 252 ARTKH--TTPITSRVARLLLYGLREGFDKIDLSMEELPAVYTGLFYKLYHRE 301

May contribute to the regulation of cell proliferation.

Mus musculus (taxid: 10090)

>sp|P13420|NUDT6_XENLA Nucleoside diphosphate-linked moiety X motif 6 OS=Xenopus laevis GN=nudt6 PE=1 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/186 (37%), Positives = 106/186 (56%), Gaps = 11/186 (5%)

Query: 143 QADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMN-DKREVLV 201
           Q+ L+ IA  EGF++HHAE     LT W+   P  LPG  +HQ+GV G V++ D  +VLV
Sbjct: 2   QSRLISIAASEGFTFHHAERNESTLTLWLKDGPSKLPGYATHQVGVAGAVLDEDNGKVLV 61

Query: 202 VKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFR--HVHLVAF 259
           V+++        WK P G  ++ ED+ + AVREV EETG+ + F  +++ R  H H  AF
Sbjct: 62  VQDR--NKTVNAWKFPGGLSDQGEDIGATAVREVLEETGIHSEFKSLLSIRQQHNHPGAF 119

Query: 260 EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDD--MSRKVIDICIKA 317
            KSDL  +C LKPLS+ I    +E    +WM L+E      Y  +   ++ +V  + +  
Sbjct: 120 GKSDLYIICRLKPLSYTINFCHQECLKCEWMDLQELA----YCSNTTIITSRVAKLLLYG 175

Query: 318 YDDRFN 323
           Y++ F+
Sbjct: 176 YNEGFH 181

May contribute to the regulation of cell proliferation.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
225445039	346	PREDICTED: nudix hydrolase 8-like [Vitis	0.956	0.956	0.711	1e-136
255546261	343	mutt domain protein, putative [Ricinus c	0.820	0.827	0.719	1e-122
224122502	281	predicted protein [Populus trichocarpa]	0.794	0.978	0.740	1e-120
297738728	221	unnamed protein product [Vitis vinifera]	0.627	0.981	0.815	1e-105
255581321	368	mutt domain protein, putative [Ricinus c	0.736	0.692	0.621	1e-93
356540550	363	PREDICTED: nudix hydrolase 8-like [Glyci	0.731	0.696	0.618	6e-92
357476761	357	Nudix hydrolase [Medicago truncatula] gi	0.731	0.708	0.610	2e-90
297794491	364	predicted protein [Arabidopsis lyrata su	0.893	0.848	0.556	3e-90
21593371	371	mutT domain protein-like [Arabidopsis th	0.849	0.792	0.563	4e-90
18422772	369	nudix hydrolase 8 [Arabidopsis thaliana]	0.849	0.796	0.563	5e-90

>gi|225445039|ref|XP_002280214.1| PREDICTED: nudix hydrolase 8-like [Vitis vinifera]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/333 (71%), Positives = 281/333 (84%), Gaps = 2/333 (0%)

Query: 14  SGFRCQNFAKEPTTSLPKTRPFPMPLKAFSSKGSSTS-TSAKLKSSLMPSLFGGGSVIKK 72
           SG  CQ+++++P  S  ++  F    + F  K       S++  SS +PSL  GG V+++
Sbjct: 11  SGLYCQSYSEKPRVSWRESCSFQGLSRGFWRKTLPLEVNSSEPNSSSIPSL-RGGYVLRR 69

Query: 73  KEINVLSPDITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGK 132
           K I VLSP I++P    EFLD ++DEYDGV+INPENLPSSANAF SALRAS+SNW+LKGK
Sbjct: 70  KGIQVLSPHISSPSVPVEFLDAWEDEYDGVVINPENLPSSANAFASALRASMSNWELKGK 129

Query: 133 KGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFV 192
           +G+WLKIL +QADLVPIAIQEGF++HHAEPGYVMLTYW+P EPC+LP SPSHQIG+GGFV
Sbjct: 130 RGIWLKILLEQADLVPIAIQEGFNFHHAEPGYVMLTYWLPNEPCLLPASPSHQIGIGGFV 189

Query: 193 MNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFR 252
           MN KREVLVVKEKCP SCSG+WK+PTGYINKSE++FSGAVREVKEETG+DTIFLEMVAFR
Sbjct: 190 MNHKREVLVVKEKCPCSCSGVWKLPTGYINKSEEIFSGAVREVKEETGIDTIFLEMVAFR 249

Query: 253 HVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVID 312
           H HLVAFE+SDLLFVCMLKPL+FEIT+ EKEIQAAKWMPL+EFV QPFY ED MSRKVID
Sbjct: 250 HAHLVAFEQSDLLFVCMLKPLTFEITVDEKEIQAAKWMPLDEFVSQPFYKEDHMSRKVID 309

Query: 313 ICIKAYDDRFNGFIAHELASKLDGKLSCLYHND 345
           ICI  YD+R+NGFIAH++ SKLD KLS LY+N+
Sbjct: 310 ICISKYDNRYNGFIAHQMTSKLDRKLSYLYYNE 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546261|ref|XP_002514190.1| mutt domain protein, putative [Ricinus communis] gi|223546646|gb|EEF48144.1| mutt domain protein, putative [Ricinus communis]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/285 (71%), Positives = 243/285 (85%), Gaps = 1/285 (0%)

Query: 61  PSLFGGGSVIKKKEINVLSPDITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSAL 120
           PSL GGG ++  + ++V SPD+++P    E LD  DDEY G +I+P +LPSSANAF ++L
Sbjct: 56  PSL-GGGHMLNNRRLHVTSPDVSSPGLKVEILDALDDEYGGCVIDPNSLPSSANAFATSL 114

Query: 121 RASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPG 180
           R SLSNWKL GKKG+WLKILS+QADL+PIAIQEGFSYHHAEPGY+MLTYWIPV PC+LPG
Sbjct: 115 RFSLSNWKLMGKKGIWLKILSEQADLIPIAIQEGFSYHHAEPGYIMLTYWIPVGPCLLPG 174

Query: 181 SPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETG 240
           SPSH IGVGGFV+NDKRE+L VKEKC  SCSG WK+PTGYINKSEDLFSGA+REVKEETG
Sbjct: 175 SPSHHIGVGGFVINDKREILAVKEKCSCSCSGFWKMPTGYINKSEDLFSGAIREVKEETG 234

Query: 241 VDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
           VDTIFL++VAFRH HLVAFEKSDLLF+C+LKPLS EITI E EI+ AKWM L+EF+KQPF
Sbjct: 235 VDTIFLKLVAFRHAHLVAFEKSDLLFMCLLKPLSDEITIDENEIEDAKWMGLDEFMKQPF 294

Query: 301 YLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGKLSCLYHND 345
           Y  D MSR+ I  C+ AY+D ++GF AH+L SKLDGKLS LY+++
Sbjct: 295 YQADHMSRRAIQACVAAYEDHYSGFTAHQLTSKLDGKLSYLYYDN 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122502|ref|XP_002330497.1| predicted protein [Populus trichocarpa] gi|222872431|gb|EEF09562.1| predicted protein [Populus trichocarpa]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/277 (74%), Positives = 240/277 (86%), Gaps = 2/277 (0%)

Query: 70  IKKKEINVLSPDITAPI--FVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNW 127
           + +  I+V+SPDI++P   F   FL+ FDDEYDGVII+P  LPSSANAF SALRA+LS W
Sbjct: 1   MNRGGIHVVSPDISSPSPGFAVGFLEAFDDEYDGVIIDPNKLPSSANAFASALRAALSKW 60

Query: 128 KLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIG 187
           KLKG+KG+WLKILS+Q DLVPIAI+EGF YHHAEPGYVMLTYWIP  PCMLP SPSHQIG
Sbjct: 61  KLKGRKGIWLKILSEQVDLVPIAIKEGFQYHHAEPGYVMLTYWIPDYPCMLPTSPSHQIG 120

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE 247
           VGGFV+NDK+EVL VKEKCP SCS +WK+PTGYINKSED+F GA+REVKEETGVDT FL+
Sbjct: 121 VGGFVINDKKEVLAVKEKCPCSCSNVWKMPTGYINKSEDIFCGAMREVKEETGVDTSFLK 180

Query: 248 MVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMS 307
           MVAFRH H++AFEKSD+LFVCML+PLS+EI I EKEIQAA WMPL+EFV QPFY ED MS
Sbjct: 181 MVAFRHAHMLAFEKSDILFVCMLRPLSYEIAIDEKEIQAAMWMPLDEFVGQPFYEEDHMS 240

Query: 308 RKVIDICIKAYDDRFNGFIAHELASKLDGKLSCLYHN 344
           RKVI+ C+ AY+DR++GF AH+L SKLDG+ S LY++
Sbjct: 241 RKVIEACVAAYEDRYSGFTAHQLTSKLDGQSSLLYYD 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738728|emb|CBI27973.3| unnamed protein product [Vitis vinifera]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 177/217 (81%), Positives = 202/217 (93%)

Query: 129 LKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGV 188
           ++GK+G+WLKIL +QADLVPIAIQEGF++HHAEPGYVMLTYW+P EPC+LP SPSHQIG+
Sbjct: 1   MQGKRGIWLKILLEQADLVPIAIQEGFNFHHAEPGYVMLTYWLPNEPCLLPASPSHQIGI 60

Query: 189 GGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEM 248
           GGFVMN KREVLVVKEKCP SCSG+WK+PTGYINKSE++FSGAVREVKEETG+DTIFLEM
Sbjct: 61  GGFVMNHKREVLVVKEKCPCSCSGVWKLPTGYINKSEEIFSGAVREVKEETGIDTIFLEM 120

Query: 249 VAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSR 308
           VAFRH HLVAFE+SDLLFVCMLKPL+FEIT+ EKEIQAAKWMPL+EFV QPFY ED MSR
Sbjct: 121 VAFRHAHLVAFEQSDLLFVCMLKPLTFEITVDEKEIQAAKWMPLDEFVSQPFYKEDHMSR 180

Query: 309 KVIDICIKAYDDRFNGFIAHELASKLDGKLSCLYHND 345
           KVIDICI  YD+R+NGFIAH++ SKLD KLS LY+N+
Sbjct: 181 KVIDICISKYDNRYNGFIAHQMTSKLDRKLSYLYYNE 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581321|ref|XP_002531471.1| mutt domain protein, putative [Ricinus communis] gi|223528925|gb|EEF30921.1| mutt domain protein, putative [Ricinus communis]

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 159/256 (62%), Positives = 205/256 (80%), Gaps = 1/256 (0%)

Query: 90  EFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPI 149
           + LD FDDEY GV+++   LP +++ F S+L  SLS+WK+ GKKG+WLK+  ++++LVPI
Sbjct: 101 KILDAFDDEYGGVVVDSNRLPKNSDDFASSLHLSLSHWKITGKKGIWLKLPLERSELVPI 160

Query: 150 AIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEK-CPR 208
           A++EGF YHHAEPGYVMLTYW+P  PCMLP + +HQ+GVGGFV+NDK EVLVV+E  C  
Sbjct: 161 AVKEGFQYHHAEPGYVMLTYWLPEGPCMLPANATHQVGVGGFVINDKNEVLVVQETFCAP 220

Query: 209 SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVC 268
           S  G+WKIPTG+I++SE++++GA+REVKEETG+DT FLE+VAFRH H +AF+KSDL FVC
Sbjct: 221 SFLGLWKIPTGFIHESEEIYTGAMREVKEETGIDTEFLEVVAFRHAHNLAFDKSDLFFVC 280

Query: 269 MLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAH 328
           MLKPLS +I + + EIQAAKWMPL EFVKQP    D M +K+IDICI     R+ G  AH
Sbjct: 281 MLKPLSTQIIVDDLEIQAAKWMPLVEFVKQPLIQGDSMFKKIIDICIARLGKRYCGLSAH 340

Query: 329 ELASKLDGKLSCLYHN 344
           +L SK DG+LSCLY+N
Sbjct: 341 KLVSKFDGRLSCLYYN 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540550|ref|XP_003538751.1| PREDICTED: nudix hydrolase 8-like [Glycine max]

 Score =  343 bits (881), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 157/254 (61%), Positives = 200/254 (78%), Gaps = 1/254 (0%)

Query: 92  LDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAI 151
           LD FDD Y+GV+I+ + LP + + F + LR SLS+WK  GKKG+WL++ S+Q+D VPIAI
Sbjct: 103 LDAFDDVYEGVVIDSDRLPDNPSTFAANLRFSLSHWKKMGKKGIWLRLPSEQSDFVPIAI 162

Query: 152 QEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEK-CPRSC 210
           +EGF YHHAEPGYVMLTYWIP  PCMLP + SHQ+GVGGFV+ND  EVLVV+EK C  + 
Sbjct: 163 KEGFRYHHAEPGYVMLTYWIPEGPCMLPANASHQVGVGGFVINDSSEVLVVQEKQCAPAN 222

Query: 211 SGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCML 270
            G WKIPTG++ +SE+L++GA+REVKEETG+DT F+E++AFRH   VAFEKSDL F+CML
Sbjct: 223 RGQWKIPTGFVLQSEELYAGAIREVKEETGIDTEFVEVIAFRHARNVAFEKSDLFFICML 282

Query: 271 KPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHEL 330
           +PLS EI + + EI+AAKWMPL EFV+QP   ED M +K+IDICI   + R+ G  AH++
Sbjct: 283 RPLSAEIIVDDPEIEAAKWMPLVEFVEQPLIQEDSMFKKIIDICIACLEKRYCGLNAHQM 342

Query: 331 ASKLDGKLSCLYHN 344
            SK DGK S LY+N
Sbjct: 343 VSKFDGKSSSLYYN 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476761|ref|XP_003608666.1| Nudix hydrolase [Medicago truncatula] gi|355509721|gb|AES90863.1| Nudix hydrolase [Medicago truncatula] gi|388508944|gb|AFK42538.1| unknown [Medicago truncatula]

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 155/254 (61%), Positives = 199/254 (78%), Gaps = 1/254 (0%)

Query: 92  LDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAI 151
           LD FDDEY G++I+P  LP +  AF S L  SLS+WK  GKKG+WLK+  +Q+DLVP+A+
Sbjct: 92  LDAFDDEYGGILIDPNRLPHNPYAFASMLCLSLSHWKRMGKKGIWLKLPIEQSDLVPVAV 151

Query: 152 QEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEK-CPRSC 210
           +EGF YHHAEPGYVMLTYWIP  PCMLP + SHQ+G+GGFV+N   EVLVV+EK C  + 
Sbjct: 152 KEGFQYHHAEPGYVMLTYWIPEGPCMLPANASHQVGIGGFVINQNNEVLVVQEKHCSPAT 211

Query: 211 SGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCML 270
            G+WKIPTG+I+++E++++GAVREVKEETG+DT F+E++AFRHVH VAFEKSDL F+CML
Sbjct: 212 LGLWKIPTGFIHEAEEIYTGAVREVKEETGIDTEFIEVIAFRHVHNVAFEKSDLFFICML 271

Query: 271 KPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHEL 330
           KPLS  IT+ + EI AAKWMPL EFV+QP   ED M +K++DI I     R+ G   H++
Sbjct: 272 KPLSSTITVDDLEIDAAKWMPLVEFVEQPLIQEDSMFKKIVDIFIARLGKRYCGLSTHQV 331

Query: 331 ASKLDGKLSCLYHN 344
            SK DGK++ LY+N
Sbjct: 332 VSKFDGKITSLYYN 345

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794491|ref|XP_002865130.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297310965|gb|EFH41389.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 181/325 (55%), Positives = 227/325 (69%), Gaps = 16/325 (4%)

Query: 33  RPF---PMPLKAFSSK--GSSTSTSAKLKSSLMPSLFGGG------SVIKKKEINVLSPD 81
           +PF   P+P K  SSK  G   + S+  KS    S++GG       S  K   +N+ S  
Sbjct: 25  QPFSGVPIPPKFCSSKVGGPKATLSSNTKSQ---SVYGGSIAATSDSGYKINGVNLKSRT 81

Query: 82  ITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILS 141
           + + +     LD +DDEY GVI++   LPS+  AF S LRASLS+W+ KGKKGVWLK+  
Sbjct: 82  LISSVKERLLLDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKLPL 141

Query: 142 KQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVE-PCMLPGSPSHQIGVGGFVMNDKREVL 200
           +Q++LVPIAI+EGF YHHAE  YVMLTYWIP E P MLP + SHQ+GVGGFV+N  +EVL
Sbjct: 142 EQSELVPIAIKEGFEYHHAEKRYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQHKEVL 201

Query: 201 VVKEK-CPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAF 259
           VV+EK C  S +G+WK+PTG+IN+SE++FSGAVREVKEETGVDT F E++AFRH H VAF
Sbjct: 202 VVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRHAHNVAF 261

Query: 260 EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYD 319
           EKSDL F+CML+PLS +I I   EI+AAKWMPL EFV+QP   ED M ++VI+IC     
Sbjct: 262 EKSDLFFICMLRPLSDKIIIDGLEIKAAKWMPLAEFVEQPMIREDKMFKRVIEICKARLR 321

Query: 320 DRFNGFIAHELASKLDGKLSCLYHN 344
            R+ G   H L S  DGK S LY+N
Sbjct: 322 HRYCGLSPHRLVSTFDGKPSSLYYN 346

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593371|gb|AAM65320.1| mutT domain protein-like [Arabidopsis thaliana]

 Score =  337 bits (865), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 220/307 (71%), Gaps = 13/307 (4%)

Query: 48  STSTSAKLKSSLMPSLFGGGSV-------IKKKEINVLSPDI-TAPIFVPEFLDPFDDEY 99
           + S+S+  KS     ++GGGS+        K   +N+ S  + ++ +     LD +DDEY
Sbjct: 49  AISSSSNTKSQF---VYGGGSIAATSDSGYKMNGVNLKSRTLMSSAVKERSLLDAYDDEY 105

Query: 100 DGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHH 159
            GVI++   LPS+  AF S LRASLS+W+ KGKKGVWLK+  +Q++LVPIAI+EGF YHH
Sbjct: 106 GGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKLPVEQSELVPIAIKEGFEYHH 165

Query: 160 AEPGYVMLTYWIPVE-PCMLPGSPSHQIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP 217
           AE GYVMLTYWIP E P MLP + SHQ+GVGGFV+N  +EVLVV+EK C  S +G+WK+P
Sbjct: 166 AEKGYVMLTYWIPKEEPSMLPANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGLWKLP 225

Query: 218 TGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEI 277
           TG+IN+SE++FSGAVREVKEETGVDT F E++AFRH H VAFEKSDL F+CML+PLS +I
Sbjct: 226 TGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRHAHNVAFEKSDLFFICMLRPLSDKI 285

Query: 278 TIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGK 337
            I   EI+AAKWMPL EFV+QP    D M ++VI+IC      R+ G   H L S  DGK
Sbjct: 286 IIDALEIKAAKWMPLAEFVEQPMIRGDKMFKRVIEICEARLSHRYCGLSPHRLVSTFDGK 345

Query: 338 LSCLYHN 344
            S LY+N
Sbjct: 346 PSSLYYN 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422772|ref|NP_568680.1| nudix hydrolase 8 [Arabidopsis thaliana] gi|68565908|sp|Q8L7W2.2|NUDT8_ARATH RecName: Full=Nudix hydrolase 8; Short=AtNUDT8 gi|332008107|gb|AED95490.1| nudix hydrolase 8 [Arabidopsis thaliana]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 173/307 (56%), Positives = 220/307 (71%), Gaps = 13/307 (4%)

Query: 48  STSTSAKLKSSLMPSLFGGGSV-------IKKKEINVLSPDI-TAPIFVPEFLDPFDDEY 99
           + S+S+  KS     ++GGGS+        K   +N+ S  + ++ +     LD +DDEY
Sbjct: 47  AISSSSNTKSQF---VYGGGSIAATSDSGYKMNGVNLKSRTLMSSAVKERSLLDAYDDEY 103

Query: 100 DGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHH 159
            GVI++   LPS+  AF S LRASLS+W+ KGKKGVWLK+  +Q++LVPIAI+EGF YHH
Sbjct: 104 GGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKLPVEQSELVPIAIKEGFEYHH 163

Query: 160 AEPGYVMLTYWIPVE-PCMLPGSPSHQIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP 217
           AE GYVMLTYWIP E P MLP + SHQ+GVGGFV+N  +EVLVV+EK C  S +G+WK+P
Sbjct: 164 AEKGYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGLWKLP 223

Query: 218 TGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEI 277
           TG+IN+SE++FSGAVREVKEETGVDT F E++AFRH H VAFEKSDL F+CML+PLS +I
Sbjct: 224 TGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRHAHNVAFEKSDLFFICMLRPLSDKI 283

Query: 278 TIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGK 337
            I   EI+AAKWMPL EFV+QP    D M ++VI+IC      R+ G   H L S  DGK
Sbjct: 284 IIDALEIKAAKWMPLAEFVEQPMIRGDKMFKRVIEICEARLSHRYCGLSPHRLVSTFDGK 343

Query: 338 LSCLYHN 344
            S LY+N
Sbjct: 344 PSSLYYN 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
TAIR|locus:2171544	369	NUDT8 "nudix hydrolase homolog	0.815	0.764	0.544	5.5e-77
TAIR|locus:2168993	278	NUDT2 "nudix hydrolase homolog	0.673	0.838	0.459	1.2e-51
TAIR|locus:2058364	302	NUDT5 "nudix hydrolase homolog	0.693	0.794	0.395	3.4e-45
TAIR|locus:2058334	283	NUDT6 "nudix hydrolase homolog	0.710	0.869	0.420	3.9e-44
DICTYBASE|DDB_G0281219	376	DDB_G0281219 "Nucleoside dipho	0.760	0.699	0.356	2.1e-38
FB|FBgn0030668	330	CG8128 [Drosophila melanogaste	0.578	0.606	0.373	1.3e-31
UNIPROTKB|F1NLN3	297	F1NLN3 "Uncharacterized protei	0.656	0.764	0.330	3.9e-28
UNIPROTKB|P53370	316	NUDT6 "Nucleoside diphosphate-	0.708	0.775	0.310	2.2e-27
UNIPROTKB|F1RQN4	314	NUDT6 "Uncharacterized protein	0.708	0.780	0.313	2.2e-27
UNIPROTKB|E2RC30	316	NUDT6 "Uncharacterized protein	0.702	0.768	0.312	5.7e-27

TAIR|locus:2171544 NUDT8 "nudix hydrolase homolog 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 159/292 (54%), Positives = 202/292 (69%)

Query:    63 LFGGGSVI-------KKKEINVLSPDI-TAPIFVPEFLDPFDDEYDGVIINPENLPSSAN 114
             ++GGGS+        K   +N+ S  + ++ +     LD +DDEY GVI++   LPS+  
Sbjct:    59 VYGGGSIAATSDSGYKMNGVNLKSRTLMSSAVKERSLLDAYDDEYGGVIVDHGKLPSNPY 118

Query:   115 AFVSALRASLSNXXXXXXXXXXXXILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVE 174
             AF S LRASLS+            +  +Q++LVPIAI+EGF YHHAE GYVMLTYWIP E
Sbjct:   119 AFASMLRASLSDWRRKGKKGVWLKLPVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEE 178

Query:   175 -PCMLPGSPSHQIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIPTGYINKSEDLFSGAV 232
              P MLP + SHQ+GVGGFV+N  +EVLVV+EK C  S +G+WK+PTG+IN+SE++FSGAV
Sbjct:   179 EPSMLPANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAV 238

Query:   233 REVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPL 292
             REVKEETGVDT F E++AFRH H VAFEKSDL F+CML+PLS +I I   EI+AAKWMPL
Sbjct:   239 REVKEETGVDTEFSEVIAFRHAHNVAFEKSDLFFICMLRPLSDKIIIDALEIKAAKWMPL 298

Query:   293 EEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGKLSCLYHN 344
              EFV+QP    D M ++VI+IC      R+ G   H L S  DGK S LY+N
Sbjct:   299 AEFVEQPMIRGDKMFKRVIEICEARLSHRYCGLSPHRLVSTFDGKPSSLYYN 350

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2168993 NUDT2 "nudix hydrolase homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 108/235 (45%), Positives = 144/235 (61%)

Query:    92 LDPFDDEYDGVIINPENLPSSANAFVSALRASLSNXXXXXXXXXXXXILSKQADLVPIAI 151
             L    D+Y GV+    + P   + F + LR+SLS             +  +   L   A+
Sbjct:    20 LPSVQDKYGGVMTEMTH-PMDPSLFSTLLRSSLSTWTLQGKKGVWIKLPKQLIGLAETAV 78

Query:   152 QEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPR-SC 210
             +EGF +HHAE  Y+ML YWIP E   LP + SH++G+G FV+N  +EVLVV+EK  R   
Sbjct:    79 KEGFWFHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVINHNKEVLVVQEKTGRFQG 138

Query:   211 SGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCML 270
              G+WK PTG +N+ ED+  G+VREVKEETGVDT F +++AFR  H   F KSDL FVCML
Sbjct:   139 QGIWKFPTGVVNEGEDIHDGSVREVKEETGVDTEFDQILAFRQTHKAFFGKSDLFFVCML 198

Query:   271 KPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGF 325
             KPLS EI   E EI+AA+WMP EE++ QPF    ++ R + DIC    +  + GF
Sbjct:   199 KPLSLEINAQESEIEAAQWMPWEEYINQPFVQNYELLRYMTDICSAKTNGDYEGF 253

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2058364 NUDT5 "nudix hydrolase homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 97/245 (39%), Positives = 150/245 (61%)

Query:    87 FVPEFLDPFDDEYDGVIINPENLPS-SANAFVSALRASLSNXXXXXXXXXXXXILSKQAD 145
             F    LD  +D + G ++N   + S +   F S L  SL              + S+ + 
Sbjct:    25 FEISLLDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIWIKLPSELSS 84

Query:   146 LVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEK 205
             LV  AI++GF+YHHAE  YVMLT+W+P  P  LP + SH+IG+G FV+N   E+LVV+E 
Sbjct:    85 LVDTAIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKNGEMLVVQEN 144

Query:   206 CPR-SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE-KSD 263
                     +WK+PTG I + E +++GAVREVKEET +D  F+E+++F   H   ++ K+D
Sbjct:   145 SGYFKDKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFVEVLSFMESHQAVWQRKTD 204

Query:   264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED--DMSRKVIDICIKAYDDR 321
             + FVC L+  +FEI   + EI AAKWMP+EE+V QP++ ++  +M + + +IC+K   ++
Sbjct:   205 IFFVCELEARTFEIQKQDSEIHAAKWMPVEEYVNQPYHNKEGNEMFKLIANICLKRSREK 264

Query:   322 FNGFI 326
             + GF+
Sbjct:   265 YTGFV 269

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2058334 NUDT6 "nudix hydrolase homolog 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 106/252 (42%), Positives = 149/252 (59%)

Query:    97 DEYDGVIINPENLPSSANAFVSALRASLSNXXXXXXXXXXXXILSKQADLVPIAIQEGFS 156
             D Y GV +N    P +   FV  LRASL              +     +L+  A  EGF 
Sbjct:    16 DNYGGVKVNLTE-PMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDNLIAPAKAEGFV 74

Query:   157 YHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDK-REVLVVKEKCPR-SCSGMW 214
              HHAE  Y MLT WI   P  LP + SH+IGVG FV+N K +EVLVV+E       +G+W
Sbjct:    75 CHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFKGTGVW 134

Query:   215 KIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE-KSDLLFVCMLKPL 273
             K+PTG + + E+++ GA+REV+EETG+ T F+E++AFR  H    E K+D+ F+C L+P 
Sbjct:   135 KLPTGVVKEGENIWEGALREVEEETGIKTKFVEVLAFRESHQAFLEIKTDIFFLCELEPT 194

Query:   274 SFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDD-RFNGFIAHELAS 332
             +FEI   + EI AAKWMP+EE+V QP+  + ++ R + +IC+K   +  + GF +  L +
Sbjct:   195 TFEIKKQDSEILAAKWMPIEEYVNQPWNQKKELFRFMANICLKRLQEMEYMGF-SKVLTT 253

Query:   333 KLDGKLSCLYHN 344
                GK S LY N
Sbjct:   254 TSSGKESYLYCN 265

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0051707 "response to other organism" evidence=IEP

GO:0035529 "NADH pyrophosphatase activity" evidence=IDA

GO:0080151 "positive regulation of salicylic acid mediated signaling pathway" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

DICTYBASE|DDB_G0281219 DDB_G0281219 "Nucleoside diphosphate-linked moiety X motif 6" [Dictyostelium discoideum (taxid:44689)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 101/283 (35%), Positives = 144/283 (50%)

Query:    71 KKKEINVLSPDITAPIFVPE-FLDPFDDEYDGVIIN-----PENL-PSSANAFVSALRAS 123
             KK E+N    D   P  + +  L    D +DG+I+      P+     S + F   ++ S
Sbjct:    93 KKIELNEKYND---PKLIEKGILAGIPDIFDGIIVKDTTQYPKGSGEDSVSKFKEIIKNS 149

Query:   124 LSNXXXXXXXXXXXXILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPV-EPCMLPGSP 182
             L              I    + L+P  ++ GFS+HH +  Y+MLT W+P+ EP  LP   
Sbjct:   150 LQFWTENKRRGIWIEIPETNSILIPTLVENGFSFHHCQSNYIMLTKWLPIGEPNKLPHYT 209

Query:   183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
             SH IG GG V+ND+ E+L++ EK        WKIP G  +  ED+   AVREV EETG+ 
Sbjct:   210 SHFIGCGGVVINDRNEILLITEK---QRPDKWKIPGGANDPGEDICETAVREVWEETGIR 266

Query:   243 TIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEF--VKQPF 300
             T F+ ++  R +H  AF + D+ F+C LKPLS EI     EI   KW P++EF  ++ PF
Sbjct:   267 TEFVSILGLRQLHNYAFNRGDIYFICALKPLSSEINSDPSEIAQCKWAPVKEFTEIETPF 326

Query:   301 YLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGKLSCLYH 343
              L+  +SR   D C   Y     G  A  +A+ L    S +YH
Sbjct:   327 PLQKSVSRLAYDYCFNGY----KGMKASAVANSLRAGNSFVYH 365

GO:0016787 "hydrolase activity" evidence=IEA

FB|FBgn0030668 CG8128 [Drosophila melanogaster (taxid:7227)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 77/206 (37%), Positives = 112/206 (54%)

Query:    97 DEYDGVIIN--PENLPSSANAFVSALRASLSNXXXXXXXXXXXXILSKQADLVPIAIQEG 154
             D + GV ++   EN+  S+  F   L  SL              +  +Q+D VPI  + G
Sbjct:    72 DRFAGVTVDGREENVDKSS--FRDKLTKSLDFWTTNKNRAIWFRVYKEQSDWVPILAENG 129

Query:   155 FSYHHAEPGYVMLTYWIPV-EPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGM 213
             F +HHA+ G V++  W+P  E   LP      +GVGG V+N++ EVLVV ++        
Sbjct:   130 FDFHHAKTGVVVMYRWLPEHESSNLPTYAHTLMGVGGLVINEQDEVLVVSDRFAM-IPNS 188

Query:   214 WKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPL 273
             WK+P GY+   E+L   A+REV EETG+ T F  +V+ RH H   F  SD+  V  LKPL
Sbjct:   189 WKLPGGYVEPRENLIDAAIREVAEETGIRTEFRSVVSLRHAHGGTFGCSDMYVVIALKPL 248

Query:   274 SFEITIYEKEIQAAKWMPLEEFVKQP 299
             + + T  E+EI   +WMP+ E++K P
Sbjct:   249 NLDFTRCEREIARIQWMPIAEYLKHP 274

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1NLN3 F1NLN3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 78/236 (33%), Positives = 120/236 (50%)

Query:   115 AFVSALRASLSNXXXXXXXXXXXXILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVE 174
             AF   LRAS++             +   Q+ L  +A  +GF++HHAE G   LT W+   
Sbjct:    57 AFGRWLRASVAQWQQEGRVAVWLHVPIFQSGLAAVAASQGFAFHHAESGSATLTRWLGEG 116

Query:   175 PCMLPGSPSHQIGVGGFVMNDKR-EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVR 233
             P  LP   SHQ+GV G V+++   +VLVV+++  ++ +G WK P G  N  ED+   AVR
Sbjct:   117 PSRLPAFASHQLGVAGAVLDENSGKVLVVQDR-NKTVNG-WKFPGGLSNPGEDIGDTAVR 174

Query:   234 EVKEETGVDTIFLEMVAFR--HVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMP 291
             EV EETG+ + F  +++ R  H H  AF KSD+  +C L+P SF I   ++E    +WM 
Sbjct:   175 EVFEETGIKSEFKSILSIRQQHKHPGAFGKSDMYIICRLQPSSFTINFCQQECLRCEWMD 234

Query:   292 LEEFVKQPFYLEDDMSRKVIDICIKAYDDRFN--GFIAHELASKLDGKLSCLYHND 345
             L+E  +        ++  V  + +  Y + F+       E  +   G    LYH +
Sbjct:   235 LDELARTKH--ATPITSNVAKLLLYGYREGFDKIDITMREFPAVYTGLFYKLYHRE 288

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|P53370 NUDT6 "Nucleoside diphosphate-linked moiety X motif 6" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 80/258 (31%), Positives = 121/258 (46%)

Query:    97 DEYDGVIINPENLPS----SANAFVSALRASLSNXXXXXXXXXXXXILSKQADLVPIAIQ 152
             D + G+ +    L +     A AF   L+A++              I   Q+  +  A  
Sbjct:    51 DRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAAS 110

Query:   153 EGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDK-REVLVVKEKCPRSCS 211
              GF +HHAE     LT W+   P  LPG  SHQ+GV G V ++  R++LVV+++      
Sbjct:   111 LGFCFHHAESDSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQDR--NKLK 168

Query:   212 GMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFR--HVHLVAFEKSDLLFVCM 269
              MWK P G     ED+   AVREV EETG+ + F  +++ R  H +  AF KSD+  +C 
Sbjct:   169 NMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICR 228

Query:   270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFN--GFIA 327
             LKP SF I   ++E    +WM L +  K        ++ +V  + +  Y + F+      
Sbjct:   229 LKPYSFTINFCQEECLRCEWMDLNDLAKTEN--TTPITSRVARLLLYGYREGFDKIDLTV 286

Query:   328 HELASKLDGKLSCLYHND 345
              EL +   G    LYH +
Sbjct:   287 EELPAVYTGLFYKLYHKE 304

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008083 "growth factor activity" evidence=TAS

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1RQN4 NUDT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 80/255 (31%), Positives = 122/255 (47%)

Query:    97 DEYDGVIINPENLPS-SANAFVSALRASLSNXXXXXXXXXXXXILSKQADLVPIAIQEGF 155
             D + GV +  + L      AF  AL+A++              I   Q+  +  A   GF
Sbjct:    52 DRFGGVSVKLDALDRLDTVAFQRALQAAIQKWRSEGRVAVWLHIPIFQSRFIAPAASLGF 111

Query:   156 SYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDK-REVLVVKEKCPRSCSGMW 214
              +HHAE     LT W+   P  LPG  +HQ+GV G V ++  +++LVV+++       MW
Sbjct:   112 CFHHAESDSSTLTLWLGKGPSRLPGYATHQVGVAGAVFDENTKKILVVQDR--NKLKNMW 169

Query:   215 KIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFR--HVHLVAFEKSDLLFVCMLKP 272
             K P G     ED+   AVREV EETG+ + F+ +++ R  H +  AF KSD+  +C LKP
Sbjct:   170 KFPGGLSEPGEDIGDTAVREVFEETGIKSEFMSLLSIRQQHTNPGAFGKSDMYIICRLKP 229

Query:   273 LSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFN--GFIAHEL 330
              SF I   + E    +WM L + VK        ++ +V  + +  Y + F+       EL
Sbjct:   230 RSFIINFCQHECLRCEWMDLSDLVKSEN--TTPITSRVARLLLYGYKEGFDKIDLTMEEL 287

Query:   331 ASKLDGKLSCLYHND 345
              +   G    LYH +
Sbjct:   288 PAVYTGLSYKLYHKE 302

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|E2RC30 NUDT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 80/256 (31%), Positives = 120/256 (46%)

Query:    97 DEYDGVIINPENLPS----SANAFVSALRASLSNXXXXXXXXXXXXILSKQADLVPIAIQ 152
             D + GV +    L +     A +F   L+A++              I   Q+  +  A  
Sbjct:    51 DRFGGVSVQLARLGALDRLDAASFRRGLQAAIQQWRSEGRIAVWLHIPILQSRFIAPAAS 110

Query:   153 EGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDK-REVLVVKEKCPRSCS 211
              GF +HHAE     LT W+   P  LPG  +HQ+GV G V ++  R++LVV+++      
Sbjct:   111 LGFCFHHAESDSSTLTLWLGEGPSRLPGYATHQLGVAGAVFDENTRKILVVQDR--NKLK 168

Query:   212 GMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV--AFEKSDLLFVCM 269
              MWK P G     ED+   AVREV EETG+ + F  +++ R  H    AF KSD+  +C 
Sbjct:   169 NMWKFPGGLSEPGEDIGDTAVREVFEETGIKSEFKSLLSIRQQHASPGAFGKSDMYIICR 228

Query:   270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFN--GFIA 327
             LKP SF I   + E    +WM L + +K        ++ +V  + +  Y + F+   F  
Sbjct:   229 LKPYSFTINFCQHECLRCEWMDLNDLIKTEN--TTPITSRVARLLLYGYREGFDKIDFTM 286

Query:   328 HELASKLDGKLSCLYH 343
              EL +   G    LYH
Sbjct:   287 EELPAVYTGLFYKLYH 302

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7W2	NUDT8_ARATH	3, ., 6, ., 1, ., -	0.5635	0.8497	0.7967	yes	no
Q8CH40	NUDT6_MOUSE	No assigned EC number	0.3013	0.8034	0.8881	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.766
3rd Layer	3.6.1.13	0.824
3rd Layer	3.6.1.22	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.145.139.1 hypothetical protein (253 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	346
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	2e-62
pfam00293	133	pfam00293, NUDIX, NUDIX domain	2e-21
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	2e-17
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	4e-12
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	4e-10
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	1e-09
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	2e-08
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	5e-08
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	2e-07
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	2e-07
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	3e-07
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	4e-07
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	6e-07
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	1e-06
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	2e-06
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	2e-06
cd04697	126	cd04697, Nudix_Hydrolase_38, Members of the Nudix	3e-06
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	6e-06
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	7e-06
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	8e-06
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	2e-05
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	2e-05
cd03675	134	cd03675, Nudix_Hydrolase_2, Contains a crystal str	3e-05
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	3e-05
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	3e-05
cd04672	123	cd04672, Nudix_Hydrolase_14, Members of the Nudix	4e-05
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	4e-05
PLN02791	770	PLN02791, PLN02791, Nudix hydrolase homolog	1e-04
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	2e-04
cd04692	144	cd04692, Nudix_Hydrolase_33, Members of the Nudix	4e-04
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	4e-04
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	6e-04
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	6e-04
cd04674	118	cd04674, Nudix_Hydrolase_16, Members of the Nudix	6e-04
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	6e-04
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	8e-04
cd03429	131	cd03429, NADH_pyrophosphatase, NADH pyrophosphatas	9e-04
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	0.001
cd04511	130	cd04511, Nudix_Hydrolase_4, Members of the Nudix h	0.002
cd04693	127	cd04693, Nudix_Hydrolase_34, Members of the Nudix	0.002
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	0.003
PRK05379	340	PRK05379, PRK05379, bifunctional nicotinamide mono	0.004

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score =  194 bits (495), Expect = 2e-62
 Identities = 72/131 (54%), Positives = 92/131 (70%), Gaps = 4/131 (3%)

Query: 184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT 243
           H +GVGG V+N+K EVLVV+E+        WK+P G ++  ED+F GAVREV EETG+DT
Sbjct: 1   HTVGVGGLVLNEKNEVLVVQER--NKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDT 58

Query: 244 IFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE 303
            F+ +V FRH H  AF KSDL F+C LKPLSF+I     EI AAKWMPLEE++ QP   E
Sbjct: 59  EFVSVVGFRHAHPGAFGKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE 118

Query: 304 DDMSRKVIDIC 314
             ++R ++DIC
Sbjct: 119 --VNRLILDIC 127

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 88.3 bits (219), Expect = 2e-21
 Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query: 184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT 243
            +  VG  ++N+  EVL+V+   P    G+W++P G +   E     AVRE++EETG+  
Sbjct: 1   RRRAVGVVLLNEDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRV 60

Query: 244 IFLEMVA---FRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
           + L ++    +        E    +F+  L     E    E E+   +W+PLEE ++   
Sbjct: 61  LLLLLLGVLEYPAPGRDGGEHVH-VFLAELLGGEPEPQPNEDEVSEVRWVPLEELLELLL 119

Query: 301 YLEDD 305
             E  
Sbjct: 120 AGEIR 124

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 77.2 bits (190), Expect = 2e-17
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD-TI 244
           + VG  ++++   VL+V+     S  G+W++P G +   E L   A+REV+EETG+D  +
Sbjct: 1   VAVGAVILDEDGRVLLVRRA--DSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDV 58

Query: 245 FLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIY-EKEIQAAKWMPLEEFVKQPFYLE 303
              +  +        E   ++FV + + +  E T+    EI   +W+ L+E         
Sbjct: 59  LRLLGVYEVESPDEGE-HAVVFVFLARLVGGEPTLLPPDEISEVRWVTLDELPALALSPA 117

Query: 304 D 304
            
Sbjct: 118 L 118

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 62.3 bits (152), Expect = 4e-12
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
           GV   V +D+  VL+++    RS +G+W +P G +   E     AVREV+EETG+D
Sbjct: 4   GVTAVVRDDEGRVLLIR----RSDNGLWALPGGAVEPGESPADTAVREVREETGLD 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCS-GMWKIPTGYINKSEDLFSGAVREVKEETGVDT 243
            + V   ++ D   +L++K       + G W++P G + + E       REV EETG+  
Sbjct: 1   VVAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV 60

Query: 244 IFLEMVAFRHVH-LVAFEKSDLL-FVCMLKPLSFEITIYEKEIQAAKWMPLEEF 295
                      H          L FVC     + +++    E +   W+ LEE 
Sbjct: 61  TPFLRYPSTVTHEDSGVYNVIYLVFVCEALSGAVKLS---DEHEEYAWVTLEEL 111

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
           V   ++N++ EVL+++E   RSC G W +P G +   E +     REVKEETG+D
Sbjct: 3   VAAVILNNQGEVLLIQE-AKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLD 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 17/127 (13%)

Query: 176 CMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREV 235
            +  G  +  + VG  ++ + R +LV +   P +  G W +P G++   E L   A RE+
Sbjct: 1   RLAMGYRTPLVAVGALIVRNGRILLVRRANEPGA--GYWALPGGFVEIGETLEEAARREL 58

Query: 236 KEETGVDTIFLEMVAF--------RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAA 287
           KEETG+    LE++A         R  H+         F    +P    +     +    
Sbjct: 59  KEETGLRVRVLELLAVFDDPGRDPRGHHVSFL-----FFAA--EPEGELLAGDGDDAAEV 111

Query: 288 KWMPLEE 294
            W PL+E
Sbjct: 112 GWFPLDE 118

Length = 145

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.7 bits (122), Expect = 5e-08
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
           ++GVG FV+N K +VL+ K K      G W +P G++   E     A REV EETG+   
Sbjct: 2   RVGVGVFVLNPKGKVLLGKRKGSHGA-GTWALPGGHLEFGESFEECAAREVLEETGLHIE 60

Query: 245 FLEMVAF 251
            ++ +  
Sbjct: 61  NVQFLTV 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
           + VG  V    R VL+V+   P   +G+W  P G +   E L   A+RE+ EETG++
Sbjct: 1   VAVGAVVFRGGR-VLLVRRANPPD-AGLWSFPGGKVELGETLEQAALRELLEETGLE 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 32/141 (22%)

Query: 191 FVMN-DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMV 249
           FV+N D+ +VL+          G W  P G+I+  E L   A+RE++EETG++ + L  +
Sbjct: 8   FVVNPDRGKVLLTH----HRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPL 63

Query: 250 AFR------------------HVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMP 291
           +                    H+HL      DL F+ +             E  A +W P
Sbjct: 64  SVLVDLDVHPIDGHPKRGVPGHLHL------DLRFLAVAPADDVAPPK-SDESDAVRWFP 116

Query: 292 LEEFVKQPFYLEDDMSRKVID 312
           L+E       L +D+ R V  
Sbjct: 117 LDEL--ASLELPEDVRRLVEK 135

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 9/112 (8%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
           +G    V +    VL+V+     +    W +P G + + E     A RE+ EE G+    
Sbjct: 1   LGARAVVTDADGRVLLVRH----TYGPGWYLPGGGLERGETFAEAARRELLEELGIR--- 53

Query: 246 LEMVAFRHV--HLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEF 295
           L +VA      +  A    D + V   +  +  +     EI  A++ P +  
Sbjct: 54  LAVVAELLGVYYHSASGSWDHVIVFRARADTQPVIRPSHEISEARFFPPDAL 105

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 194 NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH 253
           N++ E L++     ++  G W  P G++   ED    A+RE +EETG+    L +V    
Sbjct: 14  NNEIEYLLL-----QASYGHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFK 68

Query: 254 VHL----VAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRK 309
             L        K+   F+  L+P   E+ + E E Q  +W+P EE +K    L  +  + 
Sbjct: 69  ETLNYQVRGKLKTVTYFLAELRP-DVEVKLSE-EHQDYRWLPYEEALK---LLTYEDLKA 123

Query: 310 VID 312
           V+D
Sbjct: 124 VLD 126

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 198 EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV 257
            VL+++       +G W+  TG I   E     A REV EETG+D     +        +
Sbjct: 16  RVLLLRR--SDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPE--RLTLLDRGASI 71

Query: 258 AF-EKSDLLFVCMLKPLSFEITIYE-----KEIQAAKWMPLEEFVKQ 298
           AF E +D   V    P +F +          E  A +W+P EE    
Sbjct: 72  AFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAAL 118

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 46.3 bits (111), Expect = 1e-06
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 18/114 (15%)

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI--- 244
           V   +++D   +L+ +    +   G+W+ P G +   E      VRE++EE G++     
Sbjct: 4   VAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGE 63

Query: 245 FLEMVAF----RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEE 294
            L  V      + V L        +F+       +       E Q  +W+P EE
Sbjct: 64  LLATVEHDYPDKRVTL-------HVFLV----ELWSGEPQLLEHQELRWVPPEE 106

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL 246
           G G  ++N++ EVL+ K    RS +G W +P G +   E L   A RE+KEETG++   L
Sbjct: 9   GAGVILLNEQGEVLLQK----RSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEEL 64

Query: 247 E 247
           E
Sbjct: 65  E 65

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 189 GGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEM 248
           G  ++N++ +VL+V+EK      G+W IP+G +   E     AVRE  EETG+    +  
Sbjct: 17  GAVILNERNDVLLVQEK-GGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLR---VRP 72

Query: 249 VAFRHVHLVAFEKSDLL----FVCMLKPLSFEITIYEKEIQAAKWMPLEEF 295
           V F   +L  F+   L+    ++   +  +     +  EI  A +   E+ 
Sbjct: 73  VKFLGTYLGRFDDGVLVLRHVWLAEPEGQTLAPK-FTDEIAEASFFSREDV 122

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 15/115 (13%)

Query: 191 FVMNDKREVLV-----VKEKCPRSCSGMWKIPTG-YINKSEDLFSGAVREVKEETGVDTI 244
           FV N + ++ V      K+ CP    G W I  G  +   E     A RE++EE G+D +
Sbjct: 6   FVFNSEGKLCVHKRTLTKDWCP----GYWDIAFGGVVQAGESYLQNAQRELEEELGIDGV 61

Query: 245 -FLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ 298
               +  F +          +       PL  +    E+E++   W+ + E ++ 
Sbjct: 62  QLTPLGLFYYDTDGNRVWGKVFSCVYDGPLKLQ----EEEVEEITWLSINEILQF 112

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 21/122 (17%)

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD--TIF 245
           VG  +      +L+V+    R   G+W +P G +   E L     RE +EETG+    I 
Sbjct: 5   VGALIYAPDGRILLVRTTKWR---GLWGVPGGKVEWGETLEEALKREFREETGLKLRDIK 61

Query: 246 LEMVA--------FRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
             MV          +  H V F+     F         E+T  E EI   +W+  EE + 
Sbjct: 62  FAMVQEAIFSEEFHKPAHFVLFD-----FFARTDG--TEVTPNE-EIVEWEWVTPEEALD 113

Query: 298 QP 299
            P
Sbjct: 114 YP 115

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 211 SGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHV 254
            G W +P G++ K ED  + AVRE +EE GV T+  E +   H 
Sbjct: 25  DGQWALPAGHLEKGEDAVTAAVREAREEIGV-TLDPEDLRLAHT 67

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 187 GVGGFVMNDKREVLVVKEKCPR-SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
            VG  + N+  +V V      R    G W+ P G I++ ED    A+RE++EETG+D   
Sbjct: 5   NVGVVLFNEDGKVFV----GRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDS 60

Query: 246 LEMVA 250
           +E++A
Sbjct: 61  VEIIA 65

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 18/120 (15%)

Query: 185 QIGVGGFVMN---DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
            +  GG V        EVL++     R     W +P G +   E     AVREV+EETG+
Sbjct: 1   VLAAGGVVFRGSDGGIEVLLIH----RPRGDDWSLPKGKLEPGETPPEAAVREVEEETGI 56

Query: 242 DTIFLEMVAFRHVHLVAFEKSDLLFVC------MLKPLSFEITIY-EKEIQAAKWMPLEE 294
                + +            S    V       +++ L  E T   ++E+   +W+P +E
Sbjct: 57  RAEVGDPLGTIRYWF----SSSGKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDE 112

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 189 GGFVMNDKRE-VLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD-TIFL 246
           G  ++N+  + VL+VK    +S    W  P G INK ED    A+REV EETG D + ++
Sbjct: 5   GAIILNEDLDKVLLVKGWKSKS----WSFPKGKINKDEDDHDCAIREVYEETGFDISKYI 60

Query: 247 EMVAF--RHVHLVAFEKSDLLFVCMLKPLSFEI-TIYEKEIQAAKWMPLEE 294
           +   +    +      ++  L++    P          KEI   +W  +++
Sbjct: 61  DKDDYIELIIR----GQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKD 107

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 10/108 (9%)

Query: 192 VMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF 251
           V  D R +LV +E         +  P G++   E L   AVRE  EETG     +E  A 
Sbjct: 7   VERDGRFLLVEEETDGGLV---FNQPAGHLEPGESLIEAAVRETLEETGWH---VEPTAL 60

Query: 252 RHVHLVAFEKSDLLFV--CML-KPLSFEITI-YEKEIQAAKWMPLEEF 295
             ++      SD  ++      + L        +  I  A W+ LEE 
Sbjct: 61  LGIYQWTAPDSDTTYLRFAFAAELLEHLPDQPLDSGIVRAHWLTLEEI 108

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 134

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
           VG  ++N+  E+LVV+        G   +P G+++  E      +RE++EETG+
Sbjct: 4   VGVLILNEDGELLVVRRA-REPGKGTLDLPGGFVDPGESAEEALIREIREETGL 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 15/141 (10%)

Query: 191 FVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGA-VREVKEETGVDTIFLEMV 249
              +   EVL+ + +      G+W++P G +   E+L   A  RE++EETG+      + 
Sbjct: 18  VGRDGPGEVLLAQRRDDG---GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLE 74

Query: 250 AFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEK-----------EIQAAKWMPLEEFVKQ 298
                     + S +           E+                E++  +W+PL+E    
Sbjct: 75  LLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAAL 134

Query: 299 PFYLEDDMSRKVIDICIKAYD 319
               +         + +  + 
Sbjct: 135 VLAEDQVKRDAKKALLLLLFL 155

Length = 161

>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)

Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT 243
           ++ V   +  D + +L+V+EK      G+W +P G+ +         V+EVKEETG+D 
Sbjct: 2   KVDVRAAIFKDGK-ILLVREKSD----GLWSLPGGWADVGLSPAENVVKEVKEETGLDV 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 195 DKREVLVVK--EKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFR 252
               +L+    +K      G W +P G+    E      +RE+ EE G+      +  FR
Sbjct: 10  GDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFR 69

Query: 253 HVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
                +   ++ +FV  L      I   + E QA + M +EEF+ 
Sbjct: 70  VYPSASPPGTEHVFVVPLTAREDAILFGD-EGQALRLMTVEEFLA 113

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|215425 PLN02791, PLN02791, Nudix hydrolase homolog

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 11/116 (9%)

Query: 191 FVMNDKREVLVVKEKCPRSCSGMWKIPT-GYINKSEDLFSGAVREVKEETGVDT------ 243
           +  + +  +L  +  C  S  G W I + G+I+  +     A RE++EE G+        
Sbjct: 40  YSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFE 99

Query: 244 ---IFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFE-ITIYEKEIQAAKWMPLEEF 295
              +FL+         +  E +D+  V  L P+  E  T+ E E+ A K+M +EE+
Sbjct: 100 LLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEY 155

Length = 770

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 15/116 (12%)

Query: 190 GFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMV 249
            F+ +  + +L+ ++K P    G W  P G +   E     A+RE+KEETG+    L++V
Sbjct: 6   CFIKDPDKVLLLNRKKGPGW--GGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLV 63

Query: 250 AFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAA------KWMPLEEFVKQP 299
                     E+   +FV       F  T +E E           W  +++    P
Sbjct: 64  GIIKFPFPGEEERYGVFV-------FLATEFEGEPLKESEEGILDWFDIDDLPLLP 112

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 32/104 (30%)

Query: 212 GMWKIPT-GYINKSEDLFSGAVREVKEETGVD---------TIFLEMVA---------FR 252
           G+W I + G+I   E      +RE++EE G+D           F              F 
Sbjct: 33  GLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHIGKLIDREFH 92

Query: 253 HVHLVAFEKSDLLFVCMLK-PLSFEITIYEKEIQAAKWMPLEEF 295
           HV           ++  LK PL  E T+ ++E+     +PL+EF
Sbjct: 93  HV-----------YLYELKVPLE-EFTLQKEEVAGVVLIPLDEF 124

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 144

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 186 IGVGGFVMNDKREVLVVKE-KCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
           +G G  ++ D  ++L+VK  + P +  G W IP G ++  E +    VRE++EETG+ 
Sbjct: 3   VGCGAAILRDDGKLLLVKRLRAPEA--GHWGIPGGKVDWMEAVEDAVVREIEEETGLS 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 28/108 (25%)

Query: 195 DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFR-- 252
             R +LV K          W +P G I   E     A RE++EETG+  + L +  F   
Sbjct: 10  GGRVLLVRKSGS------RWALPGGKIEPGETPLQAARRELQEETGLQGLDL-LYLFHVD 62

Query: 253 ------HVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEE 294
                 HV + +   S        KP          EI   +W+ L+ 
Sbjct: 63  GGSTRHHVFVASVPPSA-----QPKPS--------NEIADCRWLSLDA 97

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
            G    +  D +  L++ +K      G W +P G I   E       REV EETG+ 
Sbjct: 1   FGAYAVIPRDGK--LLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLT 55

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 212 GMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
           G   +P G+I   E       RE+ EETGV 
Sbjct: 29  GKLALPGGFIELGETWQDAVARELLEETGVA 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 187 GVGGFVMNDKREVLVVKE-KCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETG 240
            V     +D  +V++V++ + P     + ++P G I+  ED    A RE++EETG
Sbjct: 4   AVAVLPYDDDGKVVLVRQYRPPVGGW-LLELPAGLIDPGEDPEEAARRELEEETG 57

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
           GV G + +D + +L  +     +  G   IP G+I   E      +REV+EE GVD +
Sbjct: 2   GVVGVLFSDDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPL 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|239521 cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

 Score = 38.7 bits (91), Expect = 9e-04
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 21/108 (19%)

Query: 199 VLVVK--EKC-----PRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF 251
           VLV+   ++      PR   GM+ +  G++   E L     REVKEE G+          
Sbjct: 5   VLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRV-------- 56

Query: 252 RHVHLVA-----FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEE 294
           +++  V      F  S L+     +  S EI + + E++ A+W   +E
Sbjct: 57  KNIRYVGSQPWPF-PSSLMLGFTAEADSGEIVVDDDELEDARWFSRDE 103

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer. Length = 131

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 212 GMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE 260
             W+  TG + + E     A+REVKEETG+D +  ++        + +E
Sbjct: 31  DFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYE 79

Length = 148

>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 207 PRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVA---FRHVHLVAFEKSD 263
           PR   G W +P G++   E    GA+RE  EE G       + A     H+  V      
Sbjct: 35  PRH--GFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVPHISQV-----Y 87

Query: 264 LLFVCMLKPLSFEITIYEKEIQAAKW--MPLEE 294
           + +   L  L F       E++      +P +E
Sbjct: 88  MFYRARLLDLDFAPGPESLEVRLFTEEEIPWDE 120

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 10/109 (9%)

Query: 192 VMNDKREVLVVKEKCPRSCS-----GMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL 246
           + N K E+L+ K    RS +     GMW +  G   ++ +  + A REVKEE G++  F 
Sbjct: 7   IFNSKGELLLQK----RSPNKDGWPGMWDLSVGGHVQAGETSTAAEREVKEELGLELDFS 62

Query: 247 EMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEF 295
           E+         A    D         +  ++ + ++E+   K++  +E 
Sbjct: 63  ELRPLFRYFFEAEGFDDYYLFYADVEIG-KLILQKEEVDEVKFVSKDEI 110

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score = 37.4 bits (88), Expect = 0.003
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGM-WKIPTGYINKSEDLFSGAVREVKEETGVDTIFL 246
           VG  ++N + +V   +    R   G  W+ P G I+  E       RE+ EE G+    +
Sbjct: 11  VGIILLNRQGQVFWGR----RIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDV 66

Query: 247 EMVA 250
           E++A
Sbjct: 67  EILA 70

Length = 156

>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 199 VLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
           VL+V+ +      G+W +P G++ + E L    +RE++EETG+ 
Sbjct: 216 VLLVRRR-AEPGKGLWALPGGFLEQDETLLDACLRELREETGLK 258

Length = 340

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	100.0
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.88
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.83
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.81
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.81
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.8
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.8
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.8
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.8
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.79
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.79
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.79
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.79
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.79
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.79
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.79
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.79
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.78
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.78
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.78
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.78
PLN02325	144	nudix hydrolase	99.78
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.78
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.78
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.78
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.77
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.77
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.77
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.77
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.77
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.77
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.76
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.76
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.76
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.76
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.75
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.75
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.75
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.74
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.74
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.74
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.74
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.74
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.73
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.73
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.73
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.72
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.72
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.72
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.72
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.72
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.71
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.71
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.7
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.7
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.69
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.69
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.68
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.68
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.67
PLN03143	291	nudix hydrolase; Provisional	99.65
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.64
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.64
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.64
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.63
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.63
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.6
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.59
PRK10707	190	putative NUDIX hydrolase; Provisional	99.59
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.58
PRK08999	312	hypothetical protein; Provisional	99.58
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.57
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.52
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.52
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.5
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.5
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.5
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.49
PLN02709	222	nudix hydrolase	99.48
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.41
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.41
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.4
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.27
PLN02791	770	Nudix hydrolase homolog	99.26
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.19
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.15
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.93
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	98.93
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.9
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.84
PLN02839	372	nudix hydrolase	98.69
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.37
KOG4195	275	consensus Transient receptor potential-related cha	97.78
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	97.67
PRK10880	350	adenine DNA glycosylase; Provisional	97.43
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.37
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.05
PRK13910	289	DNA glycosylase MutY; Provisional	95.44
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	94.92
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	94.91
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	94.44
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	93.85
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	93.47
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	90.18
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	85.1
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	82.96
COG4111	322	Uncharacterized conserved protein [General functio	80.59

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=7.3e-44  Score=332.30  Aligned_cols=265  Identities=45%  Similarity=0.797  Sum_probs=250.7

Q ss_pred             CCCCCCccccccCCccCCCCcEEeCCCCCCCChHHHHHHHHHHhHHhHhcCceeEEEEccccccCchHHHHhcccceecC
Q 019077           81 DITAPIFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHA  160 (346)
Q Consensus        81 ~~~~~~~~~~~~~~~~d~~~g~~v~~~~~~~~~~~f~~~l~~sl~~w~~~~~r~vw~~l~~~~~~l~~~a~~~gf~~H~~  160 (346)
                      ...++++..+.+.+..|+|+||+++....+-|...|.+.|++|+.+|+.+|++++|++++...+++++.|++.||.+||+
T Consensus        11 ~~~~~~~~~~~l~~~~D~~ggv~v~~~~~~~d~~~f~~~l~~Sl~~W~~~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hHa   90 (295)
T KOG0648|consen   11 RMDSMSVGSSLLAGLSDRYGGVVVDIVPEPMDEKLFIEELRASLQKWYLQGRKGIWLKLPEELARLVEEAAKYGFDYHHA   90 (295)
T ss_pred             CCCccccchhhhcccccccCCEEeecccCCCCHHHHHHHHHHHHHHHHHccCcccceechHHHHhHHHHHHhcCcEEecc
Confidence            45567888899999999999999999766669999999999999999999999999999999999999999999999999


Q ss_pred             CCceeEeeccccCCCCCCCCCCccceEEEEEEEeCCCeEEEEeec-CCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHh
Q 019077          161 EPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIPTGYINKSEDLFSGAVREVKEET  239 (346)
Q Consensus       161 ~~~~~~l~~wl~~~~~~lp~~~~~~v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EET  239 (346)
                      +..|+|++.|++..+.++|.++.|+++|+++|+|.+++||++++. +.....|.|++|+|.|++||++.++|+||++|||
T Consensus        91 e~~~~~l~~Wl~e~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeet  170 (295)
T KOG0648|consen   91 ESLYVMLTSWLREAPSTLPANASHRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEET  170 (295)
T ss_pred             cccceeeeeeeccccccCCCchhhheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHh
Confidence            999999999999999999999999999999999988999999986 5666889999999999999999999999999999


Q ss_pred             CCceeeeEEEEEEeeeccccc--eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHH
Q 019077          240 GVDTIFLEMVAFRHVHLVAFE--KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKA  317 (346)
Q Consensus       240 Gl~v~~~~ll~~~~~~~~~~~--~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~  317 (346)
                      |++.++.+++.+++.|...+.  ++++||+|.+++.+.+++.+..|+..++||+++++..+|..+...+++.+...|+++
T Consensus       171 gid~ef~eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~~~~~~m~~~~~~Ic~~~  250 (295)
T KOG0648|consen  171 GIDTEFVEVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPLVHPKGMFRLAAGICLNR  250 (295)
T ss_pred             CcchhhhhHHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhcccccccchhhHHHhhhhHHH
Confidence            999999999999999988777  899999999999999999999999999999999999999988777899999999999


Q ss_pred             hcCCCCCccccccccccccccccceecC
Q 019077          318 YDDRFNGFIAHELASKLDGKLSCLYHND  345 (346)
Q Consensus       318 ~~~~~~g~~~~~l~~~f~~~~~~~y~~~  345 (346)
                      +...|.|+....++.++..+..++|+|+
T Consensus       251 ~~~~~~~~~~~~l~~~~~~k~~~ly~~~  278 (295)
T KOG0648|consen  251 LEEFYLGLTAIVLTTTYTGKESYLYYNE  278 (295)
T ss_pred             HhhhcCCccceeccccccCccccccccc
Confidence            9999999999999999999999999985

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.88  E-value=4.8e-22  Score=166.31  Aligned_cols=126  Identities=56%  Similarity=0.988  Sum_probs=100.7

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD  263 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~  263 (346)
                      |.++|+++|+|++++|||++++..  .++.|.+|||++++||++.+||+||++||||+++.....++....+...+....
T Consensus         1 ~~~~~~~~v~~~~~~vLl~~r~~~--~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   78 (127)
T cd04670           1 HTVGVGGLVLNEKNEVLVVQERNK--TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSD   78 (127)
T ss_pred             CeeEEEEEEEcCCCeEEEEEccCC--CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCcee
Confidence            568899999998899999988743  579999999999999999999999999999999988887776555544455667


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHH
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDI  313 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~  313 (346)
                      ++|+|.+......+..+++|+.+++|++++++.+.++.+.  +.+.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~--~~~~~~~~  126 (127)
T cd04670          79 LYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSE--VNRLILDI  126 (127)
T ss_pred             EEEEEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHH--HHHHHHhh
Confidence            7788877544444556678899999999999988877653  44444443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.83  E-value=3.2e-20  Score=174.10  Aligned_cols=176  Identities=22%  Similarity=0.260  Sum_probs=125.5

Q ss_pred             CceeEEEEccccccCchHHHHhcccceecC--------CCceeEeeccccCCC-CCCCCCCccceEEEEEEEeCCCeEEE
Q 019077          131 GKKGVWLKILSKQADLVPIAIQEGFSYHHA--------EPGYVMLTYWIPVEP-CMLPGSPSHQIGVGGFVMNDKREVLV  201 (346)
Q Consensus       131 ~~r~vw~~l~~~~~~l~~~a~~~gf~~H~~--------~~~~~~l~~wl~~~~-~~lp~~~~~~v~V~avVin~~~~VLL  201 (346)
                      +.|.+ ..++..++.+...|. +...||..        .+....-.+|...|+ |....|+.+.++|.++|.+ +++|||
T Consensus        71 ~lr~~-~~~~~~~~~~~~~a~-~l~~w~~~~~fC~~CG~~~~~~~~~~~~~C~~c~~~~yp~~~paViv~V~~-~~~iLL  147 (256)
T PRK00241         71 SLRQL-LDLDDGLFQLLGRAV-QLAEFYRSHRFCGYCGHPMHPSKTEWAMLCPHCRERYYPRIAPCIIVAVRR-GDEILL  147 (256)
T ss_pred             hhhhh-ccCCHHHHHHHHHHH-HHHHHhhcCccccccCCCCeecCCceeEECCCCCCEECCCCCCEEEEEEEe-CCEEEE
Confidence            45555 566667777766666 55566654        112222234444444 7777888888887766654 589999


Q ss_pred             EeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEEEecCCccccCCc
Q 019077          202 VKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYE  281 (346)
Q Consensus       202 vrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~l~~~~~~i~~~~  281 (346)
                      +++.+.+  .|.|.+|||++|+||++++||+||++||||+++...++++.... ... ....+.|.+..  .++++.+++
T Consensus       148 ~rr~~~~--~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~-~~p-~~lm~~f~a~~--~~~~~~~~~  221 (256)
T PRK00241        148 ARHPRHR--NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQPW-PFP-HSLMLGFHADY--DSGEIVFDP  221 (256)
T ss_pred             EEccCCC--CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEee-cCC-CeEEEEEEEEe--cCCcccCCc
Confidence            9988553  68999999999999999999999999999999988888875422 221 22345555554  345677777


Q ss_pred             cccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHH
Q 019077          282 KEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKA  317 (346)
Q Consensus       282 ~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~  317 (346)
                      +|+.+++|+++++++.++..  ..+.+.+|+.+++.
T Consensus       222 ~Ei~~a~W~~~del~~lp~~--~sia~~li~~~~~~  255 (256)
T PRK00241        222 KEIADAQWFRYDELPLLPPS--GTIARRLIEDTVAL  255 (256)
T ss_pred             ccEEEEEEECHHHCcccCCc--hHHHHHHHHHHHHh
Confidence            89999999999999887643  34778888877653

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=3.1e-19  Score=148.85  Aligned_cols=111  Identities=21%  Similarity=0.340  Sum_probs=85.3

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc--cccee
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV--AFEKS  262 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~--~~~~~  262 (346)
                      +++|+++|++++++|||++|.+.. ..+.|.+|||++|+||++.+||+||++||||+++...++++.......  .....
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~~-~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   80 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRAP-EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWV   80 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCCC-CCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeEE
Confidence            578999999988999999997432 578999999999999999999999999999999988888775543322  11234


Q ss_pred             EEEEEEEEecCCccc-cCCccccceEEEEchhhhhcC
Q 019077          263 DLLFVCMLKPLSFEI-TIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i-~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      .++|++...  .+.. ..+++|+.+++|++++++.+.
T Consensus        81 ~~~f~~~~~--~~~~~~~~~~E~~~~~W~~~~~l~~~  115 (125)
T cd04679          81 APVYLAENF--SGEPRLMEPDKLLELGWFALDALPQP  115 (125)
T ss_pred             EEEEEEeec--CCccccCCCccccEEEEeCHHHCCch
Confidence            445666543  2222 234578999999999999763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.81  E-value=3.9e-19  Score=152.88  Aligned_cols=115  Identities=22%  Similarity=0.338  Sum_probs=87.3

Q ss_pred             ccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee--EEEEEEeeecc---
Q 019077          183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL--EMVAFRHVHLV---  257 (346)
Q Consensus       183 ~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~--~ll~~~~~~~~---  257 (346)
                      ++.++|+++|+|.+++|||+||.+. ..+|.|.+|||+|+.||++.+||+||++||||+++...  ++++.......   
T Consensus        10 ~p~v~v~~vI~~~~g~vLl~~R~~~-p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~   88 (144)
T cd03430          10 TPLVSIDLIVENEDGQYLLGKRTNR-PAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNF   88 (144)
T ss_pred             CCeEEEEEEEEeCCCeEEEEEccCC-CCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecccc
Confidence            3468999999999899999999853 36799999999999999999999999999999998766  66665432111   


Q ss_pred             ---cc--ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077          258 ---AF--EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       258 ---~~--~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                         ..  ....++|.|...  .+.+...++|+.+++|+++++++++..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~~~~~  134 (144)
T cd03430          89 FGDDFSTHYVVLGYVLKLS--SNELLLPDEQHSEYQWLTSDELLADDD  134 (144)
T ss_pred             ccCCCccEEEEEEEEEEEc--CCcccCCchhccEeEEecHHHHhcCCC
Confidence               11  123344555443  344455678999999999999987643

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.80  E-value=1e-18  Score=152.85  Aligned_cols=113  Identities=18%  Similarity=0.244  Sum_probs=84.5

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceee--eEEEEEEeeeccc----
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF--LEMVAFRHVHLVA----  258 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~--~~ll~~~~~~~~~----  258 (346)
                      .++|+++|++++++|||+||... ...|.|++|||+|++||++++||+||++||||+++..  .++++........    
T Consensus        17 ~~~v~~vI~~~~g~VLL~kR~~~-~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~   95 (159)
T PRK15434         17 LISLDFIVENSRGEFLLGKRTNR-PAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSG   95 (159)
T ss_pred             eEEEEEEEECCCCEEEEEEccCC-CCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCC
Confidence            46899999988899999999843 3679999999999999999999999999999998743  3555543222111    


Q ss_pred             --cc--eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077          259 --FE--KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       259 --~~--~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                        +.  ...++|.+..  ..+++.++++|+.+++|++++++..+..
T Consensus        96 ~~~~~~~i~~~f~~~~--~~g~~~~~~~E~~~~~W~~~~el~~~~~  139 (159)
T PRK15434         96 TDFTTHYVVLGFRLRV--AEEDLLLPDEQHDDYRWLTPDALLASDN  139 (159)
T ss_pred             CccceEEEEEEEEEEe--cCCcccCChHHeeEEEEEeHHHhhhccc
Confidence              11  2333444544  4556666677999999999999988644

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.80  E-value=5.9e-19  Score=151.91  Aligned_cols=117  Identities=26%  Similarity=0.366  Sum_probs=88.6

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEe-----eecc-
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH-----VHLV-  257 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~-----~~~~-  257 (346)
                      ++++|+++++|++++|||++|.+..   +.|.+|||++++||++.+||+||++||||+++....+++...     ..+. 
T Consensus         2 ~~~~v~~ii~~~~~~vLL~~r~~~~---~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~   78 (147)
T cd03671           2 YRPNVGVVLFNEDGKVFVGRRIDTP---GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPE   78 (147)
T ss_pred             CCceEEEEEEeCCCEEEEEEEcCCC---CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhh
Confidence            3478999999998999999998543   899999999999999999999999999999987777765421     1110 


Q ss_pred             ---------ccceeEEEEEEEEecCCccccCC---ccccceEEEEchhhhhcCCCCCc
Q 019077          258 ---------AFEKSDLLFVCMLKPLSFEITIY---EKEIQAAKWMPLEEFVKQPFYLE  303 (346)
Q Consensus       258 ---------~~~~~~~~fv~~l~~~~~~i~~~---~~Ei~~~~Wv~~eel~~l~~~~~  303 (346)
                               ..+...++|++.+......+..+   ++|+.+++|++++++.++..++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~  136 (147)
T cd03671          79 LKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFK  136 (147)
T ss_pred             hhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhh
Confidence                     01234466677665423344443   46999999999999999876653

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.80  E-value=8.3e-19  Score=145.80  Aligned_cols=113  Identities=19%  Similarity=0.287  Sum_probs=85.5

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc-c-----c
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV-A-----F  259 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~-~-----~  259 (346)
                      ++|.++|+++ ++|||+++.+.+ .++.|.+|||++|+||++.+||+||++||||+++....+++....... .     .
T Consensus         1 ~~~~~ii~~~-~~vLl~~~~~~~-~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   78 (128)
T cd04684           1 FGAYAVIPRD-GKLLLIQKNGGP-YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDA   78 (128)
T ss_pred             CeeEEEEEeC-CEEEEEEccCCC-CCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeec
Confidence            3677888876 899999998554 679999999999999999999999999999999988777765433211 1     1


Q ss_pred             ceeEEEEEEEEecCCccc--cCCccccceEEEEchhhhhcCCCCC
Q 019077          260 EKSDLLFVCMLKPLSFEI--TIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       260 ~~~~~~fv~~l~~~~~~i--~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      ....++|.|...  ....  ...++|..+++|++++++......+
T Consensus        79 ~~~~~~f~~~~~--~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~  121 (128)
T cd04684          79 HHLCVFYDARVV--GGALPVQEPGEDSHGAAWLPLDEAIERLLSP  121 (128)
T ss_pred             cEEEEEEEEEEe--cCccccCCCCCCceeeEEECHHHhhccCCCH
Confidence            234456666553  2222  3456788999999999998776654

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.80  E-value=6.7e-19  Score=151.41  Aligned_cols=126  Identities=21%  Similarity=0.258  Sum_probs=90.2

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCce--eeeEEEEEEee-------
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT--IFLEMVAFRHV-------  254 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v--~~~~ll~~~~~-------  254 (346)
                      +.++|+++++|++++|||++|..   .++.|.+|||++|+||++.+||+||++||||+++  ....++.....       
T Consensus         6 ~~~~v~~vi~~~~~~vLl~~r~~---~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   82 (148)
T PRK09438          6 RPVSVLVVIYTPDLGVLMLQRAD---DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFP   82 (148)
T ss_pred             CceEEEEEEEeCCCeEEEEEecC---CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccch
Confidence            56889999999999999998863   3579999999999999999999999999999998  43333321100       


Q ss_pred             ------eccccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHh
Q 019077          255 ------HLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAY  318 (346)
Q Consensus       255 ------~~~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~  318 (346)
                            .........++|.|...  . ...++.+|+.+++|++++++.++...+   ..+.+++.++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~f~~~~~--~-~~~~~~~E~~~~~W~~~~e~~~~~~~~---~~~~~l~~~~~~~  146 (148)
T PRK09438         83 HWRHRYAPGVTRNTEHWFCLALP--H-ERPVVLTEHLAYQWLDAREAAALTKSW---SNAEAIEQLVIRL  146 (148)
T ss_pred             hhhhccccccCCceeEEEEEecC--C-CCccccCcccceeeCCHHHHHHHhcCh---hHHHHHHHHHHHh
Confidence                  00111234556666542  2 222334599999999999999987665   3466666666554

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.79  E-value=8e-19  Score=148.54  Aligned_cols=118  Identities=23%  Similarity=0.155  Sum_probs=88.4

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL  264 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~  264 (346)
                      ..+|+++++++++++||+++.+.+..++.|.+|||++|.||++.+||+||++||||+++.....++..............
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   81 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERIH   81 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccEE
Confidence            46789999999999999998765556789999999999999999999999999999999766666543322221122334


Q ss_pred             EEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      +|++...........++.|+.+++|++++++.++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~  119 (137)
T cd03424          82 LFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLADG  119 (137)
T ss_pred             EEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence            55555532222145667889999999999998875543

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.79  E-value=9.4e-20  Score=169.97  Aligned_cols=161  Identities=22%  Similarity=0.287  Sum_probs=123.8

Q ss_pred             ceeEEEEccccccCchHHHHhcccceecC--------CCceeEeeccccCCC-CCCCCCCccceEEEEEEEeCCCeEEEE
Q 019077          132 KKGVWLKILSKQADLVPIAIQEGFSYHHA--------EPGYVMLTYWIPVEP-CMLPGSPSHQIGVGGFVMNDKREVLVV  202 (346)
Q Consensus       132 ~r~vw~~l~~~~~~l~~~a~~~gf~~H~~--------~~~~~~l~~wl~~~~-~~lp~~~~~~v~V~avVin~~~~VLLv  202 (346)
                      .|.+.-.++.....+...|+ +...||..        .+.+....+|...|+ |....||+..++|.++|++.+. +||.
T Consensus        83 lR~l~~~~~~~~~~~~~~a~-~l~~w~~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fPR~dP~vIv~v~~~~~-ilLa  160 (279)
T COG2816          83 LRSLLTELDEGLFGLAARAV-QLLEWYRSHRFCGRCGTKTYPREGGWARVCPKCGHEHFPRIDPCVIVAVIRGDE-ILLA  160 (279)
T ss_pred             HHHHhccCCHHHHHHHHHHH-HHHHHHhhCcCCCCCCCcCccccCceeeeCCCCCCccCCCCCCeEEEEEecCCc-eeec
Confidence            44444445555566666555 33444433        556666777777665 7888999999999888887655 8888


Q ss_pred             eecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEEEecCCccccCCcc
Q 019077          203 KEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEK  282 (346)
Q Consensus       203 rr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~l~~~~~~i~~~~~  282 (346)
                      ++.++.  +|++++.+|+||+|||+++|+.|||+||+||+++.+++++   +++++|.. .++..|.....+++|++|..
T Consensus       161 ~~~~h~--~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~---SQPWPfP~-SLMigf~aey~sgeI~~d~~  234 (279)
T COG2816         161 RHPRHF--PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVG---SQPWPFPH-SLMLGFMAEYDSGEITPDEG  234 (279)
T ss_pred             CCCCCC--CcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEe---ccCCCCch-hhhhhheeeeccccccCCcc
Confidence            888663  8999999999999999999999999999999999999888   56666663 34455555556788999999


Q ss_pred             ccceEEEEchhh-hhcCCC
Q 019077          283 EIQAAKWMPLEE-FVKQPF  300 (346)
Q Consensus       283 Ei~~~~Wv~~ee-l~~l~~  300 (346)
                      |+++++|++.+| ++.++-
T Consensus       235 Eleda~WFs~~evl~~L~~  253 (279)
T COG2816         235 ELEDARWFSRDEVLPALPP  253 (279)
T ss_pred             hhhhccccCHhHHhhhcCC
Confidence            999999999999 666653

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=6.8e-19  Score=145.05  Aligned_cols=108  Identities=19%  Similarity=0.287  Sum_probs=82.9

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCcee-eeEEEEEEeeeccccceeEEE
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI-FLEMVAFRHVHLVAFEKSDLL  265 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~-~~~ll~~~~~~~~~~~~~~~~  265 (346)
                      +|.++|+|++++|||+++..    .+.|.+|||++++||++++||+||++||||+.+. ....++.............++
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~----~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTY----GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVIV   77 (120)
T ss_pred             ceEEEEECCCCeEEEEEECC----CCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEEE
Confidence            57889999889999999873    3489999999999999999999999999999998 777776654433222333444


Q ss_pred             EEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077          266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                      |.|..  .......+++|+.+++|++++++++...
T Consensus        78 f~~~~--~~~~~~~~~~E~~~~~w~~~~~l~~~~~  110 (120)
T cd04680          78 FRARA--DTQPVIRPSHEISEARFFPPDALPEPTT  110 (120)
T ss_pred             EEecc--cCCCccCCcccEEEEEEECHHHCcccCC
Confidence            55543  3333345678999999999999988533

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.7e-18  Score=145.07  Aligned_cols=107  Identities=24%  Similarity=0.463  Sum_probs=81.7

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc----cccee
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV----AFEKS  262 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~----~~~~~  262 (346)
                      +|+++|++++++|||++|...+ .+|.|.+|||+++.||++.+||.||++||||+++....+++.......    .....
T Consensus         3 av~~~i~~~~~~vLL~~r~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T cd04681           3 AVGVLILNEDGELLVVRRAREP-GKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL   81 (130)
T ss_pred             eEEEEEEcCCCcEEEEEecCCC-CCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEE
Confidence            5788889988999999987443 578999999999999999999999999999999987777654321111    11223


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhh
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFV  296 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~  296 (346)
                      .++|+|.+.  ......+.+|+.+++|++++++.
T Consensus        82 ~~~~~~~~~--~~~~~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          82 DLFFVCQVD--DKPIVKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             EEEEEEEeC--CCCCcCChHHhheeEEecHHHCC
Confidence            446677653  33344556799999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=2.2e-18  Score=144.40  Aligned_cols=113  Identities=25%  Similarity=0.367  Sum_probs=87.4

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec--ccccee
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL--VAFEKS  262 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~--~~~~~~  262 (346)
                      +++|+++|+|++++|||++|... ...+.|.+|||++++||++.+||+||++||||+++...+.++......  ......
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~-~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   80 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGS-HGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYV   80 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCC-CCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEEE
Confidence            57899999999899999999843 367999999999999999999999999999999998877776543322  122245


Q ss_pred             EEEEEEEEecCCcccc-CCccccceEEEEchhhhhcC
Q 019077          263 DLLFVCMLKPLSFEIT-IYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~-~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      .++|.|.......... .+.+|+.+++|++++++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          81 TIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             EEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence            6677776643222222 14567889999999999987

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.79  E-value=2.1e-18  Score=150.32  Aligned_cols=127  Identities=22%  Similarity=0.256  Sum_probs=93.0

Q ss_pred             ccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEee--------
Q 019077          183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHV--------  254 (346)
Q Consensus       183 ~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~--------  254 (346)
                      .++++|+++|+|.+++|||+++.+   .++.|.+|||++++||++.+||.||++||||+++...++++....        
T Consensus         6 ~~~~~v~~~i~~~~g~vLL~~r~~---~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~   82 (156)
T PRK00714          6 GYRPNVGIILLNRQGQVFWGRRIG---QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPK   82 (156)
T ss_pred             CCCCeEEEEEEecCCEEEEEEEcC---CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcH
Confidence            456789999999999999999973   248999999999999999999999999999999887777664310        


Q ss_pred             ------eccccceeEEEEEEEEecCCccccC---CccccceEEEEchhhhhcCCCCCccHHHHHHHH
Q 019077          255 ------HLVAFEKSDLLFVCMLKPLSFEITI---YEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVID  312 (346)
Q Consensus       255 ------~~~~~~~~~~~fv~~l~~~~~~i~~---~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~  312 (346)
                            .....+...++|++........+.+   +++|+.+++|++++++.++..+....+++.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~~~  149 (156)
T PRK00714         83 RLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRVLK  149 (156)
T ss_pred             HHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHHHHHHHH
Confidence                  0001123456788876533334333   346899999999999998765544334444443

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=2.1e-18  Score=143.95  Aligned_cols=112  Identities=23%  Similarity=0.383  Sum_probs=82.8

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc-cc--ce
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV-AF--EK  261 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~-~~--~~  261 (346)
                      .++|+++|+|++++|||+|+..   +.|.|.+|||++++||++.+||+||++||||+++....++........ .+  ..
T Consensus         2 ~~~v~~~i~~~~~~iLL~r~~~---~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   78 (125)
T cd04696           2 LVTVGALIYAPDGRILLVRTTK---WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPA   78 (125)
T ss_pred             ccEEEEEEECCCCCEEEEEccC---CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCcc
Confidence            3678899999889999998752   468999999999999999999999999999999987776654322111 11  11


Q ss_pred             e--EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          262 S--DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       262 ~--~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      .  .+.|.+..  ....+.. ++|+.+++|++++++.++++.+
T Consensus        79 ~~~~~~~~~~~--~~~~~~~-~~e~~~~~W~~~~el~~~~~~~  118 (125)
T cd04696          79 HFVLFDFFART--DGTEVTP-NEEIVEWEWVTPEEALDYPLNS  118 (125)
T ss_pred             EEEEEEEEEEe--cCCcccC-CcccceeEEECHHHHhcCCCCH
Confidence            2  22233433  2333333 4689999999999999998765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.79  E-value=1.7e-18  Score=144.48  Aligned_cols=120  Identities=23%  Similarity=0.379  Sum_probs=87.6

Q ss_pred             eEEEEEEEeCC---CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc----c
Q 019077          186 IGVGGFVMNDK---REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV----A  258 (346)
Q Consensus       186 v~V~avVin~~---~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~----~  258 (346)
                      .++++++++.+   ++|||+++.+    .+.|.+|||++++||++.+||.||++||||+++.....++.......    .
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~----~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   77 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPR----GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKR   77 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCC----CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCC
Confidence            46788888865   8999999973    37999999999999999999999999999999988777665433222    1


Q ss_pred             cceeEEEEEEEEecCCccccC-CccccceEEEEchhhhhcCCCCCccHHHHHHHHHH
Q 019077          259 FEKSDLLFVCMLKPLSFEITI-YEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDIC  314 (346)
Q Consensus       259 ~~~~~~~fv~~l~~~~~~i~~-~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~  314 (346)
                      ......+|.+...  ...... +++|+.+++|++++++.++...+   ..+.+++.+
T Consensus        78 ~~~~~~~~~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~---~~~~~l~~~  129 (131)
T cd03673          78 VHKTVHWWLMRAL--GGEFTPQPDEEVDEVRWLPPDEARDRLSYP---NDRELLRAA  129 (131)
T ss_pred             cceEEEEEEEEEc--CCCcccCCCCcEEEEEEcCHHHHHHHcCCH---hHHHHHHHh
Confidence            2234445555442  334443 57789999999999999875543   234555544

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=2.8e-18  Score=141.60  Aligned_cols=113  Identities=27%  Similarity=0.471  Sum_probs=84.1

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc----cc-
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA----FE-  260 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~----~~-  260 (346)
                      ++|+++|+++ ++|||++|.+. .+++.|.+|||++++||++++||+||++||||+++.....++........    .. 
T Consensus         1 ~~v~~ii~~~-~~vLl~~r~~~-~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   78 (122)
T cd04673           1 VAVGAVVFRG-GRVLLVRRANP-PDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEF   78 (122)
T ss_pred             CcEEEEEEEC-CEEEEEEEcCC-CCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccce
Confidence            4677888875 79999999853 35789999999999999999999999999999998877777654433211    11 


Q ss_pred             -eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCc
Q 019077          261 -KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE  303 (346)
Q Consensus       261 -~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~  303 (346)
                       ...+.|.+..  ....+ ..++|+.+++|++++++.++++.+.
T Consensus        79 ~~~~~~~~~~~--~~~~~-~~~~E~~~~~w~~~~el~~~~~~~~  119 (122)
T cd04673          79 HYVLIDFLCRY--LGGEP-VAGDDALDARWVPLDELAALSLTES  119 (122)
T ss_pred             EEEEEEEEEEe--CCCcc-cCCcccceeEEECHHHHhhCcCCcc
Confidence             2223344443  33443 3467899999999999999987764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.78  E-value=2e-18  Score=147.33  Aligned_cols=117  Identities=16%  Similarity=0.262  Sum_probs=80.2

Q ss_pred             EEEEEEEeCCCeEEEEeec-CCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEe-----eeccccc
Q 019077          187 GVGGFVMNDKREVLVVKEK-CPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH-----VHLVAFE  260 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~-~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~-----~~~~~~~  260 (346)
                      .+.+.+++.+++|||+||. .+...+|.|.+|||++|+||++.+||+||++||||+++....+.....     .+....+
T Consensus         5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T PRK15472          5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADG   84 (141)
T ss_pred             eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCC
Confidence            3445555567899999987 344578999999999999999999999999999999876544321100     0111111


Q ss_pred             ----eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCcc
Q 019077          261 ----KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED  304 (346)
Q Consensus       261 ----~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~  304 (346)
                          ...+++++.+...+..+.+ ++|+.+++|++++++.++++.+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~l~~~~~~  131 (141)
T PRK15472         85 RKEEIYMIYLIFDCVSANRDVKI-NEEFQDYAWVKPEDLVHYDLNVAT  131 (141)
T ss_pred             CceeEEEEEEEEEeecCCCcccC-ChhhheEEEccHHHhccccccHHH
Confidence                1122233333333444443 578999999999999999887654

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.78  E-value=2.8e-18  Score=142.97  Aligned_cols=118  Identities=28%  Similarity=0.434  Sum_probs=91.8

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCC-CCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccc---c
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPR-SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAF---E  260 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~-~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~---~  260 (346)
                      +.+|+++|++.+++|||++|.+.. ..++.|.+|||++++||++.+||+||+.||||+++.....+..........   +
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~   81 (134)
T PF00293_consen    2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG   81 (134)
T ss_dssp             EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred             CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence            478999999998999999999543 367999999999999999999999999999999997666665443333222   2


Q ss_pred             eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          261 KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       261 ~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      ...++|++.+.........+..|+.+++|++++++.++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~  123 (134)
T PF00293_consen   82 EIVIFFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNG  123 (134)
T ss_dssp             EEEEEEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTT
T ss_pred             EEEEEEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCc
Confidence            455666666654333455555699999999999999987665

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=3.6e-18  Score=142.25  Aligned_cols=108  Identities=20%  Similarity=0.324  Sum_probs=83.0

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF  266 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f  266 (346)
                      .|+++|++++++|||++|...  ..+.|.+|||+||.||++.+||+||++||||+++....+++....    .+...++|
T Consensus         2 ~~~~ii~~~~~~vLL~~r~~~--~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f   75 (121)
T cd04669           2 RASIVIINDQGEILLIRRIKP--GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ----NGRTEHYF   75 (121)
T ss_pred             ceEEEEEeCCCEEEEEEEecC--CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee----CCcEEEEE
Confidence            367788888799999998743  358999999999999999999999999999999987777765443    12345677


Q ss_pred             EEEEecCCccccC---------CccccceEEEEchhhhhcCCCCC
Q 019077          267 VCMLKPLSFEITI---------YEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       267 v~~l~~~~~~i~~---------~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      .|...  ++.+..         ++.+..+++|++++++..+++.+
T Consensus        76 ~~~~~--~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~~~p  118 (121)
T cd04669          76 LARVI--SGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRP  118 (121)
T ss_pred             EEEEE--CCeecCCCchhhcccCCCCceEEEEEEHHHcccCCCCC
Confidence            77653  222211         13446679999999999998766

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.78  E-value=1.6e-18  Score=149.15  Aligned_cols=119  Identities=19%  Similarity=0.322  Sum_probs=87.1

Q ss_pred             CCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc--
Q 019077          180 GSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV--  257 (346)
Q Consensus       180 ~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~--  257 (346)
                      .+++++++|+++|+++ ++|||+||... .+.|.|.+|||++|.||++.+||+||++||||+++...++++.......  
T Consensus         4 ~~~~p~~~v~~vi~~~-~~vLL~rr~~~-~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~   81 (144)
T PLN02325          4 GEPIPRVAVVVFLLKG-NSVLLGRRRSS-IGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEE   81 (144)
T ss_pred             CCCCCeEEEEEEEEcC-CEEEEEEecCC-CCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecC
Confidence            4567789999888875 79999998843 2568999999999999999999999999999999998888876433221  


Q ss_pred             --ccceeEEEEEEEEecCCc-cccCCccccceEEEEchhhhhcCCC
Q 019077          258 --AFEKSDLLFVCMLKPLSF-EITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       258 --~~~~~~~~fv~~l~~~~~-~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                        ......++|.+....... ....+.+|..+++|+++++++...+
T Consensus        82 ~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~  127 (144)
T PLN02325         82 PKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLF  127 (144)
T ss_pred             CCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhh
Confidence              122344555555432211 1223345678899999999987433

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=4.2e-18  Score=141.19  Aligned_cols=112  Identities=26%  Similarity=0.421  Sum_probs=83.9

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEee--ec--ccc-
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHV--HL--VAF-  259 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~--~~--~~~-  259 (346)
                      +++|.++|+|+++++||++|..    .+.|.+|||++++||++.+||+||++||||+++...++++....  +.  ... 
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~----~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   77 (129)
T cd04676           2 LPGVTAVVRDDEGRVLLIRRSD----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNG   77 (129)
T ss_pred             cceEEEEEECCCCeEEEEEecC----CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCC
Confidence            4678888999889999999883    38999999999999999999999999999999887776543211  11  111 


Q ss_pred             ---ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          260 ---EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       260 ---~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                         ....++|.+...  +.....+..|..+++|++++++.+++++.
T Consensus        78 ~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~w~~~~el~~~~~~~  121 (129)
T cd04676          78 DVRQYLDITFRCRVV--GGELRVGDDESLDVAWFDPDGLPPLLMHP  121 (129)
T ss_pred             CcEEEEEEEEEEEee--CCeecCCCCceeEEEEEChhhCccccCCH
Confidence               223345555443  33333456788999999999999988775

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=3.3e-18  Score=141.41  Aligned_cols=111  Identities=25%  Similarity=0.354  Sum_probs=80.3

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCcee--eeEEEEEEeeecc-ccceeE
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI--FLEMVAFRHVHLV-AFEKSD  263 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~--~~~ll~~~~~~~~-~~~~~~  263 (346)
                      +|.++|++ +++|||++|.+.+..+|.|.+|||++++||++.+||+||++||||+.+.  ...+++..+.... ......
T Consensus         2 ~v~~vi~~-~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   80 (120)
T cd04683           2 AVYVLLRR-DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIG   80 (120)
T ss_pred             cEEEEEEE-CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEEE
Confidence            56677766 5899999998555568999999999999999999999999999999986  3444554333222 123445


Q ss_pred             EEEEEEEecCCccc-cCCccccceEEEEchhhhhcCCC
Q 019077          264 LLFVCMLKPLSFEI-TIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       264 ~~fv~~l~~~~~~i-~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                      ++|.+...  .+.. ..+++|+.+++|++++++.....
T Consensus        81 ~~f~~~~~--~~~~~~~~~~e~~~~~W~~~~~l~~~~~  116 (120)
T cd04683          81 LFFTVRRW--SGEPRNCEPDKCAELRWFPLDALPDDTV  116 (120)
T ss_pred             EEEEEEee--cCccccCCCCcEeeEEEEchHHCcchhc
Confidence            56666542  2222 23457889999999999976543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.78  E-value=7.1e-18  Score=142.56  Aligned_cols=122  Identities=24%  Similarity=0.333  Sum_probs=86.7

Q ss_pred             EEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEE
Q 019077          188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFV  267 (346)
Q Consensus       188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv  267 (346)
                      ..++|.++ ++|||++|.... ..+.|.+|||+++.||++.+||+||++||||+++...++++.............+.++
T Consensus         4 ~~~~i~~~-~~vLL~~r~~~~-~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (137)
T cd03427           4 TLCFIKDP-DKVLLLNRKKGP-GWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFV   81 (137)
T ss_pred             EEEEEEEC-CEEEEEEecCCC-CCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEE
Confidence            34555554 899999998543 6799999999999999999999999999999999888887765443332122233333


Q ss_pred             EEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077          268 CMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI  315 (346)
Q Consensus       268 ~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l  315 (346)
                      +.......... ++.|..+++|++++++.++++.+.+   +.+++.++
T Consensus        82 f~~~~~~~~~~-~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~  125 (137)
T cd03427          82 FLATEFEGEPL-KESEEGILDWFDIDDLPLLPMWPGD---REWLPLML  125 (137)
T ss_pred             EEECCcccccC-CCCccccceEEcHhhcccccCCCCc---HHHHHHHh
Confidence            33333333333 3556678999999999988776643   45555555

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=6e-18  Score=144.12  Aligned_cols=121  Identities=25%  Similarity=0.452  Sum_probs=85.7

Q ss_pred             eEEEEEEEeCC-CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEE------Eeeeccc
Q 019077          186 IGVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF------RHVHLVA  258 (346)
Q Consensus       186 v~V~avVin~~-~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~------~~~~~~~  258 (346)
                      .+|+++|+|++ ++|||++|.+    .|.|.+|||++|+||++.+||.||++||||+++......++      .......
T Consensus         3 ~~~~~~v~~~~~~~vLLv~r~~----~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   78 (138)
T cd03674           3 FTASAFVVNPDRGKVLLTHHRK----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHP   78 (138)
T ss_pred             EEEEEEEEeCCCCeEEEEEEcC----CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCC
Confidence            46788899987 9999999873    47899999999999999999999999999998765554321      1111110


Q ss_pred             ----cc--eeEEEEEEEEecCCcccc-CCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077          259 ----FE--KSDLLFVCMLKPLSFEIT-IYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI  315 (346)
Q Consensus       259 ----~~--~~~~~fv~~l~~~~~~i~-~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l  315 (346)
                          ..  ...+.|+|...  .+... .+++|+.+++|++++++..+++.+   ..+.+++.++
T Consensus        79 ~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~---~~~~~i~~~~  137 (138)
T cd03674          79 KRGVPGHLHLDLRFLAVAP--ADDVAPPKSDESDAVRWFPLDELASLELPE---DVRRLVEKAL  137 (138)
T ss_pred             CCCCCCcEEEEEEEEEEcc--CccccCCCCCcccccEEEcHHHhhhccCCH---HHHHHHHHHh
Confidence                11  13345666543  33333 257799999999999998776654   3456666554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.77  E-value=5.5e-18  Score=145.25  Aligned_cols=119  Identities=21%  Similarity=0.303  Sum_probs=87.3

Q ss_pred             CCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc-c
Q 019077          181 SPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA-F  259 (346)
Q Consensus       181 ~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~-~  259 (346)
                      ++....+|+++|+|.+++|||+++... ..++.|++|||++++||++++||+||++||||+++...+.++........ .
T Consensus         9 ~~~~~~av~~vv~~~~~~vLL~~r~~~-~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   87 (142)
T cd04700           9 VEVEARAAGAVILNERNDVLLVQEKGG-PKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGV   87 (142)
T ss_pred             cceeeeeEEEEEEeCCCcEEEEEEcCC-CCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCc
Confidence            345568899999998889999987633 35799999999999999999999999999999999887777644322111 1


Q ss_pred             ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          260 EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       260 ~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      ....++|++........+ ...+|+.+++|++++++.++...
T Consensus        88 ~~~~~~f~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~~~  128 (142)
T cd04700          88 LVLRHVWLAEPEGQTLAP-KFTDEIAEASFFSREDVAQLYAQ  128 (142)
T ss_pred             EEEEEEEEEEecCCcccc-CCCCCEEEEEEECHHHhhhcccc
Confidence            122345666553221122 23478999999999999887543

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=3.8e-18  Score=143.05  Aligned_cols=114  Identities=26%  Similarity=0.352  Sum_probs=84.0

Q ss_pred             CccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeee-cc---
Q 019077          182 PSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVH-LV---  257 (346)
Q Consensus       182 ~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~-~~---  257 (346)
                      |.+.++|++++++.+++|||++|..    .+.|.+|||+|++||++.+||+||++||||+++.....++..... ..   
T Consensus         4 ~~~~~~~~~~v~~~~~~vLL~~r~~----~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~   79 (132)
T cd04677           4 PLILVGAGVILLNEQGEVLLQKRSD----TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKP   79 (132)
T ss_pred             cccccceEEEEEeCCCCEEEEEecC----CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecC
Confidence            4456889999999889999999873    378999999999999999999999999999999887777543211 01   


Q ss_pred             cc----ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          258 AF----EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       258 ~~----~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      ..    ....+++++..  ....+..+.+|+.+++|++++++.++...
T Consensus        80 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~~~W~~~~e~~~~~~~  125 (132)
T cd04677          80 NGDDEQYIVTLYYVTKV--FGGKLVPDGDETLELKFFSLDELPELINP  125 (132)
T ss_pred             CCCcEEEEEEEEEEEec--cCCcccCCCCceeeEEEEChhHCccchhH
Confidence            01    12223343432  23344556788999999999999876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=6.9e-18  Score=140.58  Aligned_cols=111  Identities=23%  Similarity=0.428  Sum_probs=85.8

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc-----c
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA-----F  259 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~-----~  259 (346)
                      +++|.++|+++ ++|||+++++    .+.|.+|||++++||++.+||+||++||||+.+....++++.......     .
T Consensus         2 ~~~v~~~i~~~-~~vLL~~~~~----~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~   76 (123)
T cd04672           2 KVDVRAAIFKD-GKILLVREKS----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPY   76 (123)
T ss_pred             cceEEEEEEEC-CEEEEEEEcC----CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCce
Confidence            47888999986 8999999973    589999999999999999999999999999999777777765432221     1


Q ss_pred             ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCc
Q 019077          260 EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE  303 (346)
Q Consensus       260 ~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~  303 (346)
                      ....++|.|...  ...+... +|+.+++|++++++.+++++..
T Consensus        77 ~~~~~~f~~~~~--~~~~~~~-~E~~~~~W~~~~el~~l~~~~~  117 (123)
T cd04672          77 QVYKLFFLCEIL--GGEFKPN-IETSEVGFFALDDLPPLSEKRN  117 (123)
T ss_pred             EEEEEEEEEEec--CCcccCC-CceeeeEEECHHHCcccccCCc
Confidence            233456666653  3344443 7899999999999999887653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=3.2e-18  Score=142.41  Aligned_cols=113  Identities=21%  Similarity=0.261  Sum_probs=79.6

Q ss_pred             EEEEEEeCCCeEEEEeecC--CCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077          188 VGGFVMNDKREVLVVKEKC--PRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL  265 (346)
Q Consensus       188 V~avVin~~~~VLLvrr~~--~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~  265 (346)
                      |+++++.++++|||++|..  ...++|.|.+|||+++.||++++||+||++||||+++....+...............++
T Consensus         3 v~~~~~~~~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   82 (122)
T cd04682           3 VALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHV   82 (122)
T ss_pred             eEEEEEEcCCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccCCCCceEEE
Confidence            3344444459999999984  34578999999999999999999999999999999986433322221221122334455


Q ss_pred             EEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      |.+...... ....+.+|+.+++|++++++.+....
T Consensus        83 f~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~  117 (122)
T cd04682          83 FVVPLTARE-DAILFGDEGQALRLMTVEEFLAHEDA  117 (122)
T ss_pred             EEEEEecCC-CccccCchhheeecccHHHHhhcccc
Confidence            666553222 24466789999999999999876543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.77  E-value=8.4e-18  Score=141.74  Aligned_cols=126  Identities=21%  Similarity=0.266  Sum_probs=87.2

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccc--eeEE
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE--KSDL  264 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~--~~~~  264 (346)
                      +|++++. .++++||++|.+.  .++.|.+|||++++||++.+||.||++||||+++....+++.........+  ...+
T Consensus         2 ~v~~ii~-~~~~vLlv~r~~~--~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   78 (134)
T cd03675           2 TVAAVVE-RDGRFLLVEEETD--GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRF   78 (134)
T ss_pred             eEEEEEE-ECCEEEEEEEccC--CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEE
Confidence            4666655 4579999999854  568999999999999999999999999999999987777665433322112  2234


Q ss_pred             EEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077          265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~  316 (346)
                      +|++.+... ......++|+.++.|++++++.++........+.+.+..++.
T Consensus        79 ~f~~~~~~~-~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~  129 (134)
T cd03675          79 AFAAELLEH-LPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLA  129 (134)
T ss_pred             EEEEEECCC-CCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHh
Confidence            555655321 111233568999999999999988632222245666666553

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.76  E-value=1.4e-17  Score=140.44  Aligned_cols=124  Identities=19%  Similarity=0.281  Sum_probs=87.1

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF  266 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f  266 (346)
                      .+.++|++++++|||++|...+.+.|.|.||||++++||++.+|++||++||||+++....+++...+..........+|
T Consensus         5 ~~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   84 (135)
T PRK10546          5 DVVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHLHAW   84 (135)
T ss_pred             EEEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEEEEE
Confidence            34445556778999999986556789999999999999999999999999999999877666654332222222222333


Q ss_pred             EEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHH
Q 019077          267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKA  317 (346)
Q Consensus       267 v~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~  317 (346)
                      .+..  ..+.  +...|..+++|++++++.++++++.+   +++++.+++.
T Consensus        85 ~~~~--~~~~--~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~~  128 (135)
T PRK10546         85 HVPD--FHGE--LQAHEHQALVWCTPEEALRYPLAPAD---IPLLEAFMAL  128 (135)
T ss_pred             EEEE--ecCc--ccccccceeEEcCHHHcccCCCCcCc---HHHHHHHHHh
Confidence            3332  2222  22456788999999999999887754   5566665544

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.76  E-value=3.3e-18  Score=147.42  Aligned_cols=111  Identities=28%  Similarity=0.352  Sum_probs=75.9

Q ss_pred             eEEEEEEEeCC-CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077          186 IGVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL  264 (346)
Q Consensus       186 v~V~avVin~~-~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~  264 (346)
                      +.++++|+|++ ++|||+|+.+    .+.|+||||++|+||++.+||+||++||||+++......... ......+....
T Consensus         2 p~~gaii~~~~~~~vLLvr~~~----~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~-~~~~~~~~~~~   76 (145)
T cd03672           2 PVYGAIILNEDLDKVLLVKGWK----SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDY-IELIIRGQNVK   76 (145)
T ss_pred             CeeEEEEEeCCCCEEEEEEecC----CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceecccccee-eecccCCcEEE
Confidence            35788889865 7999999873    348999999999999999999999999999988653211111 11111122334


Q ss_pred             EEEEEEecCCccccC-CccccceEEEEchhhhhcCCCC
Q 019077          265 LFVCMLKPLSFEITI-YEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       265 ~fv~~l~~~~~~i~~-~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      +|++..........+ +++|+.+++|++++++.++...
T Consensus        77 ~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~  114 (145)
T cd03672          77 LYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK  114 (145)
T ss_pred             EEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence            444432211122222 3578999999999999887544

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1.2e-17  Score=139.81  Aligned_cols=109  Identities=24%  Similarity=0.419  Sum_probs=81.7

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF  266 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f  266 (346)
                      .|+++++|.+++|||++|.+.+ .++.|.+|||++|.||++.+||+||++||||+++...+++......   .....++|
T Consensus         2 ~~~~vv~~~~~~vLl~~r~~~~-~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~---~~~~~~~f   77 (123)
T cd04671           2 IVAAVILNNQGEVLLIQEAKRS-CRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQG---GSWFRFVF   77 (123)
T ss_pred             EEEEEEEcCCCEEEEEEecCCC-CCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEccC---CeEEEEEE
Confidence            4678888888999999998443 5789999999999999999999999999999999888877654321   12344555


Q ss_pred             EEEEecCCccccC---CccccceEEEEchhhhhcCCCCC
Q 019077          267 VCMLKPLSFEITI---YEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       267 v~~l~~~~~~i~~---~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      .|...  ++.+..   ++.|+.+++|++++++ .+++.+
T Consensus        78 ~a~~~--~g~~~~~~~~~~e~~~~~W~~~~el-~~~~~~  113 (123)
T cd04671          78 TGNIT--GGDLKTEKEADSESLQARWYSNKDL-PLPLRA  113 (123)
T ss_pred             EEEEe--CCeEccCCCCCcceEEEEEECHHHC-CCccch
Confidence            55543  333322   3457889999999999 444443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1.2e-17  Score=139.87  Aligned_cols=114  Identities=22%  Similarity=0.345  Sum_probs=81.5

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec--------c
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL--------V  257 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~--------~  257 (346)
                      ++|+++|++ +++|||+++.+.  ..+.|.+|||++++||++++||+||++||||+++...+++.+.....        .
T Consensus         2 ~~a~~iv~~-~~~vLl~~r~~~--~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~   78 (128)
T cd04687           2 NSAKAVIIK-NDKILLIKHHDD--GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPG   78 (128)
T ss_pred             cEEEEEEEE-CCEEEEEEEEcC--CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCC
Confidence            567788886 579999998743  35789999999999999999999999999999998766655433221        1


Q ss_pred             ccceeEEEEEEEEecCCc-ccc-CCccccceEEEEchhhhhcCCCCC
Q 019077          258 AFEKSDLLFVCMLKPLSF-EIT-IYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       258 ~~~~~~~~fv~~l~~~~~-~i~-~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      ......++|.|....... ... ..+.|..+++|++++++.++++.+
T Consensus        79 ~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~~p  125 (128)
T cd04687          79 HFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYP  125 (128)
T ss_pred             ceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcccccC
Confidence            123345566666532111 111 123455789999999999988765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.75  E-value=1.7e-17  Score=143.16  Aligned_cols=119  Identities=23%  Similarity=0.384  Sum_probs=86.4

Q ss_pred             CCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc-c
Q 019077          181 SPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA-F  259 (346)
Q Consensus       181 ~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~-~  259 (346)
                      +..+.++|++++...+ +|||++|...+ ..|.|.+|||+||.||++++||.||++||||+++...++++++...... .
T Consensus         6 ~~~p~~~v~~~i~~~~-~iLLvrR~~~p-~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r   83 (145)
T COG1051           6 YRTPLVAVGALIVRNG-RILLVRRANEP-GAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPR   83 (145)
T ss_pred             CCCcceeeeEEEEeCC-EEEEEEecCCC-CCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCc
Confidence            4556688888887654 99999999554 6789999999999999999999999999999999999999887666443 2


Q ss_pred             ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          260 EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       260 ~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      +.+..++++...........+.++...+.|+++++++.++.+
T Consensus        84 ~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~~~  125 (145)
T COG1051          84 GHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELPLP  125 (145)
T ss_pred             eeEEEEEEEEEecCCCcccCChhhHhhcceecHhHccccccc
Confidence            222222222222122222223347888999999999986443

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.75  E-value=1.4e-17  Score=140.83  Aligned_cols=106  Identities=24%  Similarity=0.347  Sum_probs=81.8

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF  266 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f  266 (346)
                      +|.+++++++++|||++|++.  ..|.|.+|||+++.||++.+||+||++||||+++.....++..... .. ....++|
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~~--~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~-~~-~~~~~~f   77 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRF--PPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWP-FP-SSLMLGF   77 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecCC--CCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCC-CC-ceEEEEE
Confidence            455667777799999999854  3689999999999999999999999999999999877777643221 11 2344556


Q ss_pred             EEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077          267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       267 v~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      ++...  ...+..+++|+.+++|++++++.++
T Consensus        78 ~~~~~--~~~~~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          78 TAEAD--SGEIVVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             EEEEc--CCcccCCchhhhccEeecHHHHhhc
Confidence            66553  3456667789999999999998874

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.75  E-value=3.7e-17  Score=135.87  Aligned_cols=121  Identities=17%  Similarity=0.271  Sum_probs=84.5

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF  266 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f  266 (346)
                      .+.++|++++++|||+||...+.++|.|.||||++++||++.+||.||++||||+++.....++...+..........+|
T Consensus         6 ~~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
T PRK10776          6 IAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITLWFW   85 (129)
T ss_pred             EEEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEEEEE
Confidence            34456677778999999986566789999999999999999999999999999998766555544322222222222334


Q ss_pred             EEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHH
Q 019077          267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDIC  314 (346)
Q Consensus       267 v~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~  314 (346)
                      .+...  ...  +...|..+++|++++++..++++...   +++++.+
T Consensus        86 ~~~~~--~~~--~~~~e~~~~~W~~~~~l~~~~~p~~~---~~~~~~~  126 (129)
T PRK10776         86 LVESW--EGE--PWGKEGQPGRWVSQVALNADEFPPAN---EPIIAKL  126 (129)
T ss_pred             EEEEE--CCc--cCCccCCccEEecHHHCccCCCCccc---HHHHHHH
Confidence            44322  122  22457788899999999998887643   4555443

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.9e-17  Score=137.06  Aligned_cols=106  Identities=25%  Similarity=0.312  Sum_probs=76.8

Q ss_pred             EEEEEEeCCCeEEEEeecCCC-CCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077          188 VGGFVMNDKREVLVVKEKCPR-SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF  266 (346)
Q Consensus       188 V~avVin~~~~VLLvrr~~~~-~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f  266 (346)
                      |+++++++ ++|||+||.+.. ..+|.|.+|||++|+||++.+||+||++||||+++.....+........ ......+|
T Consensus         3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~   80 (117)
T cd04691           3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTS-ELQLLHYY   80 (117)
T ss_pred             EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCC-CeEEEEEE
Confidence            45566665 899999998433 4789999999999999999999999999999999755555544332221 22334455


Q ss_pred             EEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077          267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       267 v~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      .+..  ..+.+  ..+|+.+++|+++++++.++
T Consensus        81 ~~~~--~~~~~--~~~E~~~~~W~~~~~l~~~~  109 (117)
T cd04691          81 VVTF--WQGEI--PAQEAAEVHWMTANDIVLAS  109 (117)
T ss_pred             EEEE--ecCCC--CcccccccEEcCHHHcchhh
Confidence            5543  23333  34789999999999998664

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=3.2e-17  Score=136.84  Aligned_cols=110  Identities=18%  Similarity=0.315  Sum_probs=82.3

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec----cccce
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL----VAFEK  261 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~----~~~~~  261 (346)
                      +.|.++|+++ ++|||+++..    .+.|.+|||++++||++.+||+||++||||+++.....++......    .....
T Consensus         2 ~~v~~vi~~~-~~vLl~~~~~----~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   76 (126)
T cd04688           2 VRAAAIIIHN-GKLLVQKNPD----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHE   76 (126)
T ss_pred             eEEEEEEEEC-CEEEEEEeCC----CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEE
Confidence            3566777765 4999998873    5799999999999999999999999999999998888776543211    11223


Q ss_pred             eEEEEEEEEecCCcccc-------CCccccceEEEEchhhhhcCCCCC
Q 019077          262 SDLLFVCMLKPLSFEIT-------IYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       262 ~~~~fv~~l~~~~~~i~-------~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      ..++|.|.+.  .+...       .++.|+.+++|++++++..+++.+
T Consensus        77 ~~~~f~~~~~--~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~p  122 (126)
T cd04688          77 IEFYYLVTLL--DESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYP  122 (126)
T ss_pred             EEEEEEEEeC--CCcccccccceeccCCCEEEEEEeeHHHcccCccCC
Confidence            4556666653  32322       245789999999999999887765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.3e-17  Score=139.78  Aligned_cols=111  Identities=23%  Similarity=0.391  Sum_probs=83.0

Q ss_pred             EEEEEEEeCCCeEEEEeecC-CCCCCCceee-eeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077          187 GVGGFVMNDKREVLVVKEKC-PRSCSGMWKI-PTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL  264 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~-~~~~~g~W~l-PGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~  264 (346)
                      ++.++++|.+++|||++|.. ....+|.|.+ |||++++||++.+||+||++||||+++.....++..............
T Consensus         2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~   81 (126)
T cd04697           2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGK   81 (126)
T ss_pred             eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEE
Confidence            46788999999999998883 3346899999 699999999999999999999999998766655543332222222233


Q ss_pred             EEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077          265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                      +|.+..   ...+.++++|+.+++|++++++.++..
T Consensus        82 ~f~~~~---~~~~~~~~~E~~~~~w~~~~el~~~~~  114 (126)
T cd04697          82 VFSCVY---DGPLKLQEEEVEEITWLSINEILQFKE  114 (126)
T ss_pred             EEEEEE---CCCCCCCHhHhhheEEcCHHHHHHHhh
Confidence            454443   234556778999999999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.4e-17  Score=138.53  Aligned_cols=113  Identities=25%  Similarity=0.391  Sum_probs=81.1

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCC-CCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc--ccee
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPR-SCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA--FEKS  262 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~-~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~--~~~~  262 (346)
                      ++|+++|.+++++|||++|...+ ..+|.|.+|||++++||++.+||+||++||||+++....++.....+...  ....
T Consensus         2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04699           2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI   81 (129)
T ss_pred             ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEE
Confidence            56778888877999999998443 35899999999999999999999999999999998877664333233222  1222


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      .++|.+..  ... ...+++|..+++|++++++..+.++
T Consensus        82 ~~~~~~~~--~~~-~~~~~~e~~~~~w~~~~el~~~~~~  117 (129)
T cd04699          82 YLVFVCEA--LSG-AVKLSDEHEEYAWVTLEELAILKAD  117 (129)
T ss_pred             EEEEEeee--cCC-cccCChhheEEEEecHHHhhhhhcc
Confidence            23333332  222 2234568889999999998766554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.74  E-value=1.5e-17  Score=144.97  Aligned_cols=112  Identities=21%  Similarity=0.247  Sum_probs=84.7

Q ss_pred             EEEEEEEeCC--CeEEEEeecCC-CCCCCceeeeeEEecCC-CCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccccee
Q 019077          187 GVGGFVMNDK--REVLVVKEKCP-RSCSGMWKIPTGYINKS-EDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKS  262 (346)
Q Consensus       187 ~V~avVin~~--~~VLLvrr~~~-~~~~g~W~lPGG~ve~G-Es~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~  262 (346)
                      +|.+++.+.+  ++|||+||... ..++|.|.+|||++|+| |++.+||+||++||||+++....+++.........+..
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~   83 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV   83 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence            4556666644  79999999843 34789999999999999 99999999999999999998877776543332222334


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      ...|++.... ...+.++++|+.+++|++++++.+..
T Consensus        84 v~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~  119 (157)
T cd03426          84 VTPVVGLVPP-PLPLVLNPDEVAEVFEVPLSFLLDPA  119 (157)
T ss_pred             EEEEEEEECC-CCCCCCCHHHhheeEEEcHHHHhCcC
Confidence            4556665532 23556677899999999999998864

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=6.2e-17  Score=136.27  Aligned_cols=113  Identities=20%  Similarity=0.281  Sum_probs=86.1

Q ss_pred             CCCCCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec
Q 019077          177 MLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL  256 (346)
Q Consensus       177 ~lp~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~  256 (346)
                      ....++++.++|+++++++ ++|||++|.... ..|.|.+|||++|+||++++||.||++||||+++....++++.... 
T Consensus         5 ~~~~~~~~~~~v~~ii~~~-~~vLL~kr~~~~-~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~~~-   81 (130)
T cd04511           5 GYIHYQNPKIIVGCVPEWE-GKVLLCRRAIEP-RHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYSVP-   81 (130)
T ss_pred             ccccCCCCcEEEEEEEecC-CEEEEEEecCCC-CCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEecC-
Confidence            3345566677888777765 899999997443 6789999999999999999999999999999999877777655332 


Q ss_pred             cccceeEEEEEEEEecCCccccCCccccceEEEEchhhhh
Q 019077          257 VAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFV  296 (346)
Q Consensus       257 ~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~  296 (346)
                       ......++|.+.+.  ...+. .+.|..+++|++++++.
T Consensus        82 -~~~~~~~~f~~~~~--~~~~~-~~~e~~~~~~~~~~~l~  117 (130)
T cd04511          82 -HISQVYMFYRARLL--DLDFA-PGPESLEVRLFTEEEIP  117 (130)
T ss_pred             -CceEEEEEEEEEEc--CCccc-CCcchhceEEECHHHCC
Confidence             22345566777663  33333 35678899999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>TIGR00586 mutt mutator mutT protein

Probab=99.73  E-value=1.1e-16  Score=133.20  Aligned_cols=115  Identities=14%  Similarity=0.143  Sum_probs=83.6

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL  265 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~  265 (346)
                      ..+.++|++++++|||++|...+.+.|.|+||||.+++||++.+|++||+.||||+++.....++...+..........+
T Consensus         5 ~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~~   84 (128)
T TIGR00586         5 QIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWFW   84 (128)
T ss_pred             EEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEEE
Confidence            34555666777899999998766789999999999999999999999999999999987666655433333222223334


Q ss_pred             EEEEEecCCccccCCccccceEEEEchhhhhcCCCCCcc
Q 019077          266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED  304 (346)
Q Consensus       266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~  304 (346)
                      |.+...  +...  ...+..+++|++++++.+++++...
T Consensus        85 ~~~~~~--~~~~--~~~~~~~~~W~~~~~l~~~~~p~~~  119 (128)
T TIGR00586        85 LLERWE--GGPP--GKEGQPEEWWVLVGLLADDFFPAAN  119 (128)
T ss_pred             EEEEEc--CCCc--CcccccccEEeCHHHCCccCCCCCC
Confidence            444432  2221  2345677899999999999888754

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=2.5e-17  Score=137.85  Aligned_cols=110  Identities=23%  Similarity=0.277  Sum_probs=78.3

Q ss_pred             EEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeEE--EEEEeeecccccee
Q 019077          187 GVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLEM--VAFRHVHLVAFEKS  262 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~l--l~~~~~~~~~~~~~  262 (346)
                      .|.+++++++++|||++|. .+...+|.|.+| ||++++||++ +||+||++||||+++....+  +........  +..
T Consensus         2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~--~~~   78 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE--GFD   78 (127)
T ss_pred             eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC--CeE
Confidence            4677889988999999988 333467999998 8999999999 99999999999999764333  222211111  222


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                      ..+ ++........+.++.+|+.+++|++++++.++..
T Consensus        79 ~~~-~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~  115 (127)
T cd04693          79 DYY-LFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIG  115 (127)
T ss_pred             EEE-EEEecCcccccccCHHHhhhEEEeCHHHHHHHHh
Confidence            222 2222223345556678999999999999987643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=5.1e-17  Score=136.96  Aligned_cols=114  Identities=21%  Similarity=0.284  Sum_probs=77.7

Q ss_pred             EEEEEE---eCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEE---EEeeeccccce
Q 019077          188 VGGFVM---NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVA---FRHVHLVAFEK  261 (346)
Q Consensus       188 V~avVi---n~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~---~~~~~~~~~~~  261 (346)
                      |++||+   +++++|||++|...  .+|.|.+|||++++||++.+||+||++||||+++.......   ...........
T Consensus         2 ~~~v~~~~~~~~~~vLl~~r~~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   79 (131)
T cd04695           2 VSGVLLRSLDKETKVLLLKRVKT--LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRIL   79 (131)
T ss_pred             ceEEEEEEcCCCCEEEEEEecCC--CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEE
Confidence            444554   35689999999854  57999999999999999999999999999999986543221   11111111112


Q ss_pred             eEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccH
Q 019077          262 SDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDD  305 (346)
Q Consensus       262 ~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~  305 (346)
                      ...+|++... ....+.+ ++|+.+++|++++++.++...+.++
T Consensus        80 ~~~~f~~~~~-~~~~~~~-~~E~~~~~W~~~~e~~~~~~~~~~~  121 (131)
T cd04695          80 MAPVFVGFVP-PHQEVVL-NHEHTEYRWCSFAEALELAPFPGQR  121 (131)
T ss_pred             EEEEEEEEec-CCCcccc-CchhcccEecCHHHHHHhcCChhHH
Confidence            2334444442 1222333 4789999999999999987766543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=5.6e-17  Score=135.95  Aligned_cols=112  Identities=24%  Similarity=0.259  Sum_probs=83.5

Q ss_pred             EEEEEEEeC--CCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEee---eccc---
Q 019077          187 GVGGFVMND--KREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHV---HLVA---  258 (346)
Q Consensus       187 ~V~avVin~--~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~---~~~~---  258 (346)
                      .|.+++++.  +++|||++|...  ++|.|.+|||+++.||++.+||+||++||||+.+....++.....   ....   
T Consensus         3 ~~~v~~~~~~~~~~vLL~~r~~~--~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~   80 (129)
T cd04664           3 SVLVVPYRLTGEGRVLLLRRSDK--YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNG   80 (129)
T ss_pred             EEEEEEEEeCCCCEEEEEEeCCC--CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCc
Confidence            466788887  899999999854  679999999999999999999999999999999876666554321   1111   


Q ss_pred             cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          259 FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       259 ~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      .....++|++.+..  ......++|+.+++|++++++.++...+
T Consensus        81 ~~~~~~~f~~~~~~--~~~~~~~~E~~~~~W~~~~e~~~~~~~~  122 (129)
T cd04664          81 RVWTEHPFAFHLPS--DAVVTLDWEHDAFEWVPPEEAAALLLWE  122 (129)
T ss_pred             eEEEEeEEEEEcCC--CCcccCCccccccEecCHHHHHHHHcCh
Confidence            12344566666532  2223346789999999999999886654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.72  E-value=1.4e-16  Score=130.81  Aligned_cols=113  Identities=25%  Similarity=0.375  Sum_probs=83.7

Q ss_pred             EEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEE
Q 019077          188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFV  267 (346)
Q Consensus       188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv  267 (346)
                      +.+++.++++++||++|.+.+..+|.|.+|||+++.||++.++|.||++||||+++.....++...+..........+|.
T Consensus         4 ~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (124)
T cd03425           4 VAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFL   83 (124)
T ss_pred             EEEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEE
Confidence            34555676699999999855567999999999999999999999999999999998776666544333322233334444


Q ss_pred             EEEecCCccccCCccccceEEEEchhhhhcCCCCCcc
Q 019077          268 CMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED  304 (346)
Q Consensus       268 ~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~  304 (346)
                      +...  ...+  ...|..+++|++++++.+++++..+
T Consensus        84 ~~~~--~~~~--~~~e~~~~~W~~~~el~~~~~~~~~  116 (124)
T cd03425          84 VELW--SGEP--QLLEHQELRWVPPEELDDLDFPPAD  116 (124)
T ss_pred             Eeee--CCCc--ccccCceEEEeeHHHcccCCCCccc
Confidence            4332  2222  2457789999999999999988755

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=8.7e-17  Score=134.05  Aligned_cols=108  Identities=15%  Similarity=0.186  Sum_probs=77.0

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc----cce
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA----FEK  261 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~----~~~  261 (346)
                      +.|.++|++ +++|||+++.    ..+.|.+|||++|+||++.+||+||++||||+++....+++........    ...
T Consensus         2 ~~~~~vi~~-~~~vLlv~~~----~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~   76 (125)
T cd04689           2 LRARAIVRA-GNKVLLARVI----GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHE   76 (125)
T ss_pred             eEEEEEEEe-CCEEEEEEec----CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEE
Confidence            467777775 6799999987    3478999999999999999999999999999999887777654332211    112


Q ss_pred             eEEEEEEEEecCCcc-ccCCccccceEEEEchhhhhcC
Q 019077          262 SDLLFVCMLKPLSFE-ITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       262 ~~~~fv~~l~~~~~~-i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      ..++|.+........ ....++|+.+++|++++++...
T Consensus        77 ~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  114 (125)
T cd04689          77 INHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSLY  114 (125)
T ss_pred             EEEEEEEEcccccccCCccCccceEEEEEccHHHcccC
Confidence            334555544321111 1223567899999999997644

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=9.2e-17  Score=132.20  Aligned_cols=107  Identities=20%  Similarity=0.337  Sum_probs=78.9

Q ss_pred             EEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceee--eEEEEEEeeecccc---cee
Q 019077          188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF--LEMVAFRHVHLVAF---EKS  262 (346)
Q Consensus       188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~--~~ll~~~~~~~~~~---~~~  262 (346)
                      +.+++++.++++||++++    ..+.|.+|||++++||++++||+||++||||+++..  ...++.........   ...
T Consensus         3 ~~~~v~~~~~~vLl~~r~----~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (118)
T cd04690           3 AAALILVRDGRVLLVRKR----GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVR   78 (118)
T ss_pred             EEEEEEecCCeEEEEEEC----CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEE
Confidence            566777888899999987    357899999999999999999999999999999877  66665443322111   123


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      ..+|.+...  . .+. ...|+.+++|++++++...++.+
T Consensus        79 ~~~f~~~~~--~-~~~-~~~e~~~~~W~~~~e~~~~~~~~  114 (118)
T cd04690          79 ATVYVAELT--G-EPV-PAAEIEEIRWVDYDDPADDRLAP  114 (118)
T ss_pred             EEEEEEccc--C-CcC-CCchhhccEEecHHHccccccCc
Confidence            345555442  2 332 35689999999999997766654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.71  E-value=1e-16  Score=143.03  Aligned_cols=129  Identities=19%  Similarity=0.235  Sum_probs=87.8

Q ss_pred             eEEEEEEEeCCCeEEEEeecC-CCCCCCce-eeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077          186 IGVGGFVMNDKREVLVVKEKC-PRSCSGMW-KIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD  263 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~-~~~~~g~W-~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~  263 (346)
                      .++.++|+|++++|||++|.. +...+|.| .+|||++++||++.+||+||++||||+.+.....++.............
T Consensus        38 ~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~  117 (180)
T PRK15393         38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWG  117 (180)
T ss_pred             EEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEE
Confidence            556778888889999999873 33356776 5899999999999999999999999998765555543322222112222


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEchhhhhcC--CCCCccHHHHHHHHHHHHHhcC
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ--PFYLEDDMSRKVIDICIKAYDD  320 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l--~~~~~~~~~~~ii~~~l~~~~~  320 (346)
                      .+|.+..   .+...++++|+.+++|++++++.++  .+.+.  . ...+..++....+
T Consensus       118 ~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~--~-~~~l~~~l~~~~~  170 (180)
T PRK15393        118 ALFSCVS---HGPFALQEEEVSEVCWMTPEEITARCDEFTPD--S-LKALALWLTRNAK  170 (180)
T ss_pred             EEEEEEe---CCCCCCChHHeeEEEECCHHHHhhhhhhcCcc--H-HHHHHHHHHhhcc
Confidence            3444433   3455667789999999999999987  34332  2 3445555544443

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.71  E-value=8.3e-17  Score=134.68  Aligned_cols=119  Identities=28%  Similarity=0.416  Sum_probs=85.2

Q ss_pred             eEEEEEEEeCC---CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEE-eeec---cc
Q 019077          186 IGVGGFVMNDK---REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFR-HVHL---VA  258 (346)
Q Consensus       186 v~V~avVin~~---~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~-~~~~---~~  258 (346)
                      .++++|+++.+   .+|||++++.     +.|.+|||++++||++.+||+||++||||+++....+++.. ....   ..
T Consensus         3 ~~~g~vi~~~~~~~~~vLl~~~~~-----~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   77 (130)
T cd03428           3 RSAGAIIYRRLNNEIEYLLLQASY-----GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRG   77 (130)
T ss_pred             eEEEEEEEEecCCCceEEEEEccC-----CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccC
Confidence            45777777744   3799999883     89999999999999999999999999999999876664211 1111   11


Q ss_pred             cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHH
Q 019077          259 FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDIC  314 (346)
Q Consensus       259 ~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~  314 (346)
                      ......+|++.... ...+..+ +|+.+++|++++++.++....   -++.+++++
T Consensus        78 ~~~~~~~f~~~~~~-~~~~~~~-~E~~~~~W~~~~e~~~~~~~~---~~~~~~~~~  128 (130)
T cd03428          78 KLKTVTYFLAELRP-DVEVKLS-EEHQDYRWLPYEEALKLLTYE---DLKAVLDKA  128 (130)
T ss_pred             cceEEEEEEEEeCC-CCccccc-cceeeEEeecHHHHHHHcCch---hHHHHHHHh
Confidence            23455667776542 3344444 789999999999999886544   245565554

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.7e-16  Score=130.01  Aligned_cols=103  Identities=21%  Similarity=0.320  Sum_probs=76.5

Q ss_pred             EEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEE
Q 019077          190 GFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCM  269 (346)
Q Consensus       190 avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~  269 (346)
                      ++|...+++|||++|.     .|.|.+|||++++||++.+||.||++||||+++.....+.....    ......+|.+.
T Consensus         4 ~~i~~~~~~vLlv~r~-----~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~----~~~~~~~f~~~   74 (112)
T cd04667           4 TVICRRGGRVLLVRKS-----GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG----GSTRHHVFVAS   74 (112)
T ss_pred             EEEEecCCEEEEEEcC-----CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC----CCEEEEEEEEE
Confidence            3444556899999986     28999999999999999999999999999999876665554321    12234556665


Q ss_pred             EecCCccccCCccccceEEEEchhhhhcCCCCCc
Q 019077          270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE  303 (346)
Q Consensus       270 l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~  303 (346)
                      +.  .......++|+.+++|++++++.++..+..
T Consensus        75 ~~--~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  106 (112)
T cd04667          75 VP--PSAQPKPSNEIADCRWLSLDALGDLNASAA  106 (112)
T ss_pred             cC--CcCCCCCchheeEEEEecHHHhhhcccchh
Confidence            43  222333467899999999999999877653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.8e-16  Score=133.89  Aligned_cols=107  Identities=21%  Similarity=0.386  Sum_probs=75.6

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCce-eeeEEEEEEee-e--cc----c
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT-IFLEMVAFRHV-H--LV----A  258 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v-~~~~ll~~~~~-~--~~----~  258 (346)
                      +|+++|+++ ++|||+++.+    .+.|.||||+||+||++.+||+||++||||+.+ .....++.... .  ..    .
T Consensus         2 ~~~~ii~~~-~~vLLv~~~~----~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~   76 (131)
T cd04686           2 AVRAIILQG-DKILLLYTKR----YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADI   76 (131)
T ss_pred             cEEEEEEEC-CEEEEEEEcC----CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCce
Confidence            467788874 7999999873    368999999999999999999999999999987 44555554321 1  11    1


Q ss_pred             cceeEEEEEEEEecCCccccCCcccc---ceEEEEchhhhhcC
Q 019077          259 FEKSDLLFVCMLKPLSFEITIYEKEI---QAAKWMPLEEFVKQ  298 (346)
Q Consensus       259 ~~~~~~~fv~~l~~~~~~i~~~~~Ei---~~~~Wv~~eel~~l  298 (346)
                      +....++|+|.+.........+..|.   .+++|++++++.+-
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~  119 (131)
T cd04686          77 FHMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH  119 (131)
T ss_pred             eEEEEEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence            22345678887653333333433333   36899999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=1.6e-16  Score=136.21  Aligned_cols=113  Identities=22%  Similarity=0.351  Sum_probs=81.3

Q ss_pred             eEEEEEEEeCC---CeEEEEeecC-CCCCCCceee-eeEEecCCCCHHHHHHHHHHHHhCCceee--eEEEEEEeeecc-
Q 019077          186 IGVGGFVMNDK---REVLVVKEKC-PRSCSGMWKI-PTGYINKSEDLFSGAVREVKEETGVDTIF--LEMVAFRHVHLV-  257 (346)
Q Consensus       186 v~V~avVin~~---~~VLLvrr~~-~~~~~g~W~l-PGG~ve~GEs~~eAA~REv~EETGl~v~~--~~ll~~~~~~~~-  257 (346)
                      .+|.++|+|.+   ++||+++|.. ....+|.|.+ |||++++||++.+||+||++||||+.+..  ...++....... 
T Consensus         3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~   82 (144)
T cd04692           3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDH   82 (144)
T ss_pred             eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccc
Confidence            35778889876   8999999983 3457899999 59999999999999999999999998753  333443322211 


Q ss_pred             --c--cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077          258 --A--FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       258 --~--~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                        .  ......+|++........+.++++|+.+++|++++++.++
T Consensus        83 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  127 (144)
T cd04692          83 IGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAEL  127 (144)
T ss_pred             cCCCccceEEEEEEEeccCChhhcCCChhHhheEEEECHHHHHHH
Confidence              0  1123456666553222345566789999999999999765

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.69  E-value=5.3e-16  Score=138.84  Aligned_cols=115  Identities=18%  Similarity=0.107  Sum_probs=86.9

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL  265 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~  265 (346)
                      .+|.++.++++++|||+++.+.+.....|+||||.+|+||++++||+||++||||+++.....++.....+.......++
T Consensus        48 ~~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~  127 (185)
T PRK11762         48 GAVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNI  127 (185)
T ss_pred             CEEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEE
Confidence            34666667778899999998777788899999999999999999999999999999999988887665544444444445


Q ss_pred             EEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      |++.... ......++.|..++.|++++++.++...
T Consensus       128 f~a~~~~-~~~~~~~e~E~i~~~~~~~~e~~~~~~~  162 (185)
T PRK11762        128 VLAEDLY-PERLEGDEPEPLEVVRWPLADLDELLAR  162 (185)
T ss_pred             EEEEccc-cccCCCCCCceeEEEEEcHHHHHHHHHc
Confidence            5554321 1122335667778999999999876443

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=3.1e-16  Score=134.94  Aligned_cols=113  Identities=17%  Similarity=0.288  Sum_probs=80.3

Q ss_pred             eEEEEEEEeCCCeEEEEeecC-CCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee----EEEEEEeeecc---
Q 019077          186 IGVGGFVMNDKREVLVVKEKC-PRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL----EMVAFRHVHLV---  257 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~-~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~----~ll~~~~~~~~---  257 (346)
                      ++|.++|+|.+++|||++|.. ...++|.|.+|||++++||++.+||+||++||||+.+...    ++++.......   
T Consensus         2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~   81 (143)
T cd04694           2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL   81 (143)
T ss_pred             cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence            467888899999999999983 3357899999999999999999999999999999988753    45543321111   


Q ss_pred             ---c--cceeEEEEEEEEecC----CccccCCccccceEEEEchhhhhcC
Q 019077          258 ---A--FEKSDLLFVCMLKPL----SFEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       258 ---~--~~~~~~~fv~~l~~~----~~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                         .  ......++++.....    ...+.++++|+.+++|++++++.++
T Consensus        82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~  131 (143)
T cd04694          82 SRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV  131 (143)
T ss_pred             CCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHH
Confidence               1  122333333322211    1134456689999999999998764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=4e-16  Score=130.55  Aligned_cols=108  Identities=22%  Similarity=0.181  Sum_probs=78.0

Q ss_pred             EEEEEEeCC---CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee-EEEEEEeeeccc----c
Q 019077          188 VGGFVMNDK---REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL-EMVAFRHVHLVA----F  259 (346)
Q Consensus       188 V~avVin~~---~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~-~ll~~~~~~~~~----~  259 (346)
                      +++|+++.+   ++|||+++.+    .+.|.+|||+||.||++.+||+||++||||+++... ..++........    .
T Consensus         3 ~g~v~~~~~~~~~~vLLv~~~~----~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~   78 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSRR----TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPP   78 (122)
T ss_pred             EEEEEEEEcCCceEEEEEEecC----CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCc
Confidence            566666643   7899999873    289999999999999999999999999999998777 777655433222    1


Q ss_pred             ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          260 EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       260 ~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      .....+|.+....  ......+.|+.+++|++++++.++...
T Consensus        79 ~~~~~~f~~~~~~--~~~~~~~~e~~~~~W~~~~ea~~~~~~  118 (122)
T cd04666          79 RCEVAVFPLEVTE--ELDEWPEMHQRKRKWFSPEEAALLVEE  118 (122)
T ss_pred             eEEEEEEEEEEec--cccCCcccCceEEEEecHHHHHHhcCC
Confidence            2344555555432  222223456789999999999877544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.67  E-value=3.6e-16  Score=137.31  Aligned_cols=114  Identities=18%  Similarity=0.259  Sum_probs=83.0

Q ss_pred             ceEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeEEE-EEE-eeecccc-
Q 019077          185 QIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLEMV-AFR-HVHLVAF-  259 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~ll-~~~-~~~~~~~-  259 (346)
                      ..+|+++|+|++++|||++|. .....+|.|.+| ||++++||++++||+||++||||+.+....++ ... +...... 
T Consensus        30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  109 (165)
T cd02885          30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGG  109 (165)
T ss_pred             eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCC
Confidence            466778889999999999998 334578999997 89999999999999999999999998776664 221 1111111 


Q ss_pred             ---ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          260 ---EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       260 ---~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                         .....+|.+...   ....++.+|+.+++|++++++.++...
T Consensus       110 ~~~~~i~~~f~~~~~---~~~~~~~~Ev~~~~w~~~~el~~~~~~  151 (165)
T cd02885         110 LVEHEIDHVFFARAD---VTLIPNPDEVSEYRWVSLEDLKELVAA  151 (165)
T ss_pred             ceeeEEEEEEEEEeC---CCCCCCccceeEEEEECHHHHHHHHHh
Confidence               112334444432   234456789999999999999886543

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>PLN03143 nudix hydrolase; Provisional

Probab=99.65  E-value=1.5e-15  Score=144.24  Aligned_cols=222  Identities=17%  Similarity=0.170  Sum_probs=124.8

Q ss_pred             cccceeeccccccCccccccCCccceeeccccccCCCCCCC-CccccccCCccCCCCcEEeCCCCCCCChHHHHHHHHHH
Q 019077           45 KGSSTSTSAKLKSSLMPSLFGGGSVIKKKEINVLSPDITAP-IFVPEFLDPFDDEYDGVIINPENLPSSANAFVSALRAS  123 (346)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~g~~v~~~~~~~~~~~f~~~l~~s  123 (346)
                      +..+.++|++.++++++++                 ++++. ++++.+...              +..+.++|.+.+...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~   64 (291)
T PLN03143         16 MAHKEASSSSSSSPLTHSI-----------------TLPGQPGQPVLVVAA--------------PGISSSDFRKAIDSS   64 (291)
T ss_pred             cceehhccCCCCCCceeEE-----------------EccCCCCCceeEecC--------------CCCCHHHHHhHhcCh
Confidence            5556677788888999999                 88877 666655544              334667887776665


Q ss_pred             h-HHhHhcCceeEEEEccccccCchHHHHhcccceecCCCceeEeeccccC--CCCCCCCCCc-cceEEEEEEE-eCCCe
Q 019077          124 L-SNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPV--EPCMLPGSPS-HQIGVGGFVM-NDKRE  198 (346)
Q Consensus       124 l-~~w~~~~~r~vw~~l~~~~~~l~~~a~~~gf~~H~~~~~~~~l~~wl~~--~~~~lp~~~~-~~v~V~avVi-n~~~~  198 (346)
                      + ++|...=....-+. ....-.+-...+ ++..|....-+|+.+..-.-+  ....++..-. +..+|+++++ +.+++
T Consensus        65 ~~~~w~~~~~~~~~~~-~~~~~~~~~~~~-~~vd~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge  142 (291)
T PLN03143         65 LFRQWLKNLQSESGIL-AYGSMSLKQVLI-QGVDMFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGE  142 (291)
T ss_pred             HHHHHHHHhhhccccc-cCCCceeEEEEE-EEEecccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCC
Confidence            5 77754321110000 001111111112 222222334445444322111  1122332222 1235555554 44444


Q ss_pred             --EEEEeecCCCCCCCceeeeeEEecCC-CCHHHHHHHHHHHHhCCceeeeEEEEE-----------EeeeccccceeEE
Q 019077          199 --VLVVKEKCPRSCSGMWKIPTGYINKS-EDLFSGAVREVKEETGVDTIFLEMVAF-----------RHVHLVAFEKSDL  264 (346)
Q Consensus       199 --VLLvrr~~~~~~~g~W~lPGG~ve~G-Es~~eAA~REv~EETGl~v~~~~ll~~-----------~~~~~~~~~~~~~  264 (346)
                        |+|+++.+.+.+...|++|||.+|++ |++.+||+||++||||+.+...++...           .+..+........
T Consensus       143 ~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~  222 (291)
T PLN03143        143 TYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEIS  222 (291)
T ss_pred             EEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEE
Confidence              99999998777788999999999984 899999999999999998653333221           1122222222334


Q ss_pred             EEEEEEecCCc---------cccCCccccceEEEEchhhhhcCC
Q 019077          265 LFVCMLKPLSF---------EITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       265 ~fv~~l~~~~~---------~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      +|++.......         .-..++.|..++.|++++++..+.
T Consensus       223 Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~  266 (291)
T PLN03143        223 LFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMT  266 (291)
T ss_pred             EEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHH
Confidence            45543321111         011245677889999999988875

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.64  E-value=1e-15  Score=133.64  Aligned_cols=113  Identities=16%  Similarity=0.239  Sum_probs=80.6

Q ss_pred             ceEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeE--EEEEEee-ecccc
Q 019077          185 QIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLE--MVAFRHV-HLVAF  259 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~--ll~~~~~-~~~~~  259 (346)
                      ..+|+++|+|.+++|||+||. .+...+|.|.+| ||+++.||  .+||+||++|||||++...+  .+..... .....
T Consensus        27 h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~  104 (158)
T TIGR02150        27 HRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAW  104 (158)
T ss_pred             EEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCC
Confidence            356778899999999999988 444578999998 79999999  49999999999999987654  2221111 11111


Q ss_pred             c--eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          260 E--KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       260 ~--~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      +  ....+|.+..  . ..+.++++|+.+++|++++++.++...+
T Consensus       105 g~~~~~~~f~~~~--~-~~~~~~~~Ev~~~~W~~~~el~~~~~~~  146 (158)
T TIGR02150       105 GEHELCPVFFARA--P-VPLNPNPEEVAEYRWVSLEELKEILKAP  146 (158)
T ss_pred             CcEEEEEEEEEec--C-CcccCChhHeeeEEEeCHHHHHHHHhcC
Confidence            2  2334444443  2 2456667799999999999998875443

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.64  E-value=1.2e-15  Score=136.43  Aligned_cols=113  Identities=15%  Similarity=0.280  Sum_probs=81.4

Q ss_pred             ceEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeE-EEEEEee-eccccc
Q 019077          185 QIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLE-MVAFRHV-HLVAFE  260 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~-ll~~~~~-~~~~~~  260 (346)
                      ..+|+++|+|++++|||+||. .....+|.|.+| ||++++||++++||+||++||||+++.... +++.... .....+
T Consensus        34 h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  113 (184)
T PRK03759         34 HLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNG  113 (184)
T ss_pred             eeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCC
Confidence            356778899989999999987 333467889987 899999999999999999999999986433 2322211 111111


Q ss_pred             ----eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077          261 ----KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       261 ----~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                          ....+|++...   +.+.++++|+.+++|++++++.++..
T Consensus       114 ~~~~~~~~vf~~~~~---~~~~~~~~Ev~~~~W~~~~el~~~i~  154 (184)
T PRK03759        114 IVENEVCPVFAARVT---SALQPNPDEVMDYQWVDPADLLRAVD  154 (184)
T ss_pred             ceeeEEEEEEEEEEC---CCCCCChhHeeeEEEECHHHHHHHHH
Confidence                22345555442   35566778999999999999987644

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=4e-15  Score=120.93  Aligned_cols=112  Identities=27%  Similarity=0.470  Sum_probs=81.6

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc--ccceeEE
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV--AFEKSDL  264 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~--~~~~~~~  264 (346)
                      ++++++++.++++||++|...  ..|.|.+|||+++.||++.++|+||+.||+|+.+..............  .......
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~--~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   79 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADS--PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVF   79 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCC--CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEE
Confidence            567788888799999999854  579999999999999999999999999999998865444443322221  1223444


Q ss_pred             EEEEEEecCCccc-cCCccccceEEEEchhhhhcCCCCC
Q 019077          265 LFVCMLKPLSFEI-TIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       265 ~fv~~l~~~~~~i-~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      +|.+...  .... ..++.|..+.+|++++++.+++...
T Consensus        80 ~~~~~~~--~~~~~~~~~~e~~~~~w~~~~~l~~~~~~~  116 (123)
T cd02883          80 VFLARLV--GGEPTLLPPDEISEVRWVTLDELPALALSP  116 (123)
T ss_pred             EEEEEeC--CCCcCCCCCCccceEEEEcHHHCccccccc
Confidence            5555543  2222 2456788899999999998865544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=2.3e-15  Score=127.88  Aligned_cols=116  Identities=19%  Similarity=0.251  Sum_probs=80.9

Q ss_pred             EEEEEEEeCCCeEEEEeecCC-CCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCce-eeeEEEEEEe----eeccccc
Q 019077          187 GVGGFVMNDKREVLVVKEKCP-RSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT-IFLEMVAFRH----VHLVAFE  260 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~-~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v-~~~~ll~~~~----~~~~~~~  260 (346)
                      ++.++++|.+++|||+++... ....+.|.+|||+++.||++.+||.||++||||+++ ....++....    .......
T Consensus         2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~   81 (133)
T cd04685           2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR   81 (133)
T ss_pred             eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccce
Confidence            578899999999999998743 235789999999999999999999999999999998 5444442221    1112223


Q ss_pred             eeEEEEEEEEecCCcc-cc--CC-ccccceEEEEchhhhhcC--CCCC
Q 019077          261 KSDLLFVCMLKPLSFE-IT--IY-EKEIQAAKWMPLEEFVKQ--PFYL  302 (346)
Q Consensus       261 ~~~~~fv~~l~~~~~~-i~--~~-~~Ei~~~~Wv~~eel~~l--~~~~  302 (346)
                      ...++|++........ ..  .. ..++.+++|++++++.+.  .+.+
T Consensus        82 ~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~~~~~~P  129 (133)
T cd04685          82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAATPETVYP  129 (133)
T ss_pred             eeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhCCCccCC
Confidence            4566777766421111 11  11 234668999999999887  4443

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.63  E-value=4.6e-15  Score=144.82  Aligned_cols=116  Identities=22%  Similarity=0.383  Sum_probs=80.6

Q ss_pred             CCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEe-----ee
Q 019077          181 SPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH-----VH  255 (346)
Q Consensus       181 ~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~-----~~  255 (346)
                      ++...++|+++|++ +++|||++|...+ +.|.|.+|||++|+||++++||+||++||||+++....+.+...     ..
T Consensus       199 ~~~~~vtv~avv~~-~g~VLLvrR~~~p-~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~  276 (340)
T PRK05379        199 YPPTFVTVDAVVVQ-SGHVLLVRRRAEP-GKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH  276 (340)
T ss_pred             CCCcceEEEEEEEE-CCEEEEEEecCCC-CCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence            33445788888775 5799999998532 57999999999999999999999999999999876554432211     01


Q ss_pred             cc--c-cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077          256 LV--A-FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       256 ~~--~-~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      +.  . .....++|.+.+..........++|..+++|++++++..+
T Consensus       277 p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        277 PGRSLRGRTITHAFLFEFPAGELPRVKGGDDADKARWVPLAELLAM  322 (340)
T ss_pred             CCCCCCCcEEEEEEEEEecCCccCccCCCCceeeEEEEEHHHhhhh
Confidence            11  1 1234556666654211111123568899999999999875

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.60  E-value=9.4e-15  Score=130.97  Aligned_cols=116  Identities=13%  Similarity=0.013  Sum_probs=85.3

Q ss_pred             ceEEEEEEEeC-CCeEEEEeecCCCC-----CCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc
Q 019077          185 QIGVGGFVMND-KREVLVVKEKCPRS-----CSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA  258 (346)
Q Consensus       185 ~v~V~avVin~-~~~VLLvrr~~~~~-----~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~  258 (346)
                      ..+|++++++. +++|||+++.+.+.     .+..|++|||++|+||++++||+||++||||+.+.....++.....+..
T Consensus        44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~  123 (185)
T TIGR00052        44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGG  123 (185)
T ss_pred             CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCC
Confidence            34677777875 48999999987654     5679999999999999999999999999999999887777655444443


Q ss_pred             cceeEEEEEEEEecCC--ccccCCccccceEEEEchhhhhcCCC
Q 019077          259 FEKSDLLFVCMLKPLS--FEITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       259 ~~~~~~~fv~~l~~~~--~~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                      ......+|++......  .....+++|...+.|++++++.++..
T Consensus       124 ~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~  167 (185)
T TIGR00052       124 VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIK  167 (185)
T ss_pred             CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHH
Confidence            4445566777653211  11122345667789999999987644

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.59  E-value=5e-15  Score=125.39  Aligned_cols=99  Identities=22%  Similarity=0.282  Sum_probs=69.9

Q ss_pred             CCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEE-----Eeee-c------ccccee
Q 019077          195 DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF-----RHVH-L------VAFEKS  262 (346)
Q Consensus       195 ~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~-----~~~~-~------~~~~~~  262 (346)
                      +++++||+++...  ..|.|.||||+||+||++.+||+||++||||+.+.. .+++.     .... +      ...+..
T Consensus        11 ~~~~~Llvk~~~~--~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~   87 (132)
T cd04661          11 DDTLVLLVQQKVG--SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA-KFYGNAPVGFYKYKYPKAVRNEGIVGAK   87 (132)
T ss_pred             cCcEEEEEEeecC--CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE-EEEEecCcEEEEEecCcccccccCcccE
Confidence            4578999998732  358999999999999999999999999999998764 23221     1110 0      011233


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      ..+|.|..  .++++.+ ..|+.+++|++++++.++.
T Consensus        88 ~~~f~~~~--~~g~~~~-~~e~~~~~W~~~~el~~~l  121 (132)
T cd04661          88 VFFFKARY--MSGQFEL-SQNQVDFKWLAKEELQKYL  121 (132)
T ss_pred             EEEEEEEE--ecCcccc-CCCcceeEecCHHHHHhhc
Confidence            45555654  3455443 4789999999999998753

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.59  E-value=2e-14  Score=129.34  Aligned_cols=113  Identities=18%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             eEEEEEEEe--CCCeEEEEeec-CCCCCCCceeeeeEEecCC-CCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccce
Q 019077          186 IGVGGFVMN--DKREVLVVKEK-CPRSCSGMWKIPTGYINKS-EDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEK  261 (346)
Q Consensus       186 v~V~avVin--~~~~VLLvrr~-~~~~~~g~W~lPGG~ve~G-Es~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~  261 (346)
                      .++.++.+.  +++.||++||. ......|.|+||||.+|+| |++.+||+||++||||++...+..++.........+.
T Consensus        31 ~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~  110 (190)
T PRK10707         31 QAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGY  110 (190)
T ss_pred             CeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCc
Confidence            344444442  44689999977 3334679999999999985 6899999999999999999988888765533233344


Q ss_pred             eEEEEEEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077          262 SDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       262 ~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      ....+++.+. ......++++|+.++.|+|++++.++.
T Consensus       111 ~~~~~v~~~~-~~~~~~~d~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707        111 QVTPVVGIIP-PDLPYRANEDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             EEEEEEEEEC-CCCCCCCChhhhheEEEEeHHHHhCcc
Confidence            4445555443 223455677899999999999998864

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.58  E-value=3.5e-14  Score=128.93  Aligned_cols=115  Identities=14%  Similarity=0.026  Sum_probs=85.9

Q ss_pred             eEEEEEEEeC-CCeEEEEeecCCCCC-----CCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccc
Q 019077          186 IGVGGFVMND-KREVLVVKEKCPRSC-----SGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAF  259 (346)
Q Consensus       186 v~V~avVin~-~~~VLLvrr~~~~~~-----~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~  259 (346)
                      -+|+++++++ +++|||+++.+++..     +-.|++|+|.+|+||++.+||+||+.||||+.+.....+..+...+...
T Consensus        50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~  129 (202)
T PRK10729         50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGGT  129 (202)
T ss_pred             CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCcC
Confidence            4566777776 479999999977653     3689999999999999999999999999999998877776555544444


Q ss_pred             ceeEEEEEEEEecC---CccccCCccccceEEEEchhhhhcCCC
Q 019077          260 EKSDLLFVCMLKPL---SFEITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       260 ~~~~~~fv~~l~~~---~~~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                      ....++|++.....   ......+++|..++.|++++++.++..
T Consensus       130 ~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~  173 (202)
T PRK10729        130 SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVE  173 (202)
T ss_pred             ceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHH
Confidence            45566666654211   111234567778899999999987643

>PRK08999 hypothetical protein; Provisional

Probab=99.58  E-value=3.1e-14  Score=137.05  Aligned_cols=114  Identities=17%  Similarity=0.232  Sum_probs=82.1

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF  266 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f  266 (346)
                      .+.++|++.+++|||++|...+.+.|.|.||||++++||++.+|+.||++||||+.+.....+....+..........+|
T Consensus         7 ~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y   86 (312)
T PRK08999          7 VAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVR   86 (312)
T ss_pred             EEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEE
Confidence            34455667778999999986666889999999999999999999999999999999876555543332222222222333


Q ss_pred             EEEEecCCccccCCccccceEEEEchhhhhcCCCCCcc
Q 019077          267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED  304 (346)
Q Consensus       267 v~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~  304 (346)
                      .+...  ...  ++..|..+++|++++++.+++++...
T Consensus        87 ~~~~~--~~~--~~~~e~~~~~Wv~~~el~~~~~~~~~  120 (312)
T PRK08999         87 RVTAW--QGE--PHGREGQPLAWVAPDELAVYPFPPAN  120 (312)
T ss_pred             EEEEe--cCc--ccCccCCccEEecHHHcccCCCCcch
Confidence            33321  222  33557788999999999999888754

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.57  E-value=7.1e-16  Score=144.66  Aligned_cols=115  Identities=22%  Similarity=0.299  Sum_probs=86.6

Q ss_pred             CCCCCccceEEEEEEEeCCC-eEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec
Q 019077          178 LPGSPSHQIGVGGFVMNDKR-EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL  256 (346)
Q Consensus       178 lp~~~~~~v~V~avVin~~~-~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~  256 (346)
                      ...||+..+.|..+|++.++ +.||.|++++  .+|+|..++|++|+|||++|||+||++||||++++.+.+...   .+
T Consensus       180 n~~yPr~dPvVIm~li~~d~~~~LL~R~~r~--~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~as---QP  254 (345)
T KOG3084|consen  180 NVIYPRTDPVVIMLLIDHDGKHALLGRQKRY--PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVAS---QP  254 (345)
T ss_pred             CeeccCCCCeEEEEEEcCCCCEeeeecccCC--CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeec---CC
Confidence            45678888889999999775 5556665555  568999999999999999999999999999999998887663   44


Q ss_pred             cc-cceeEEEEEEEEecCCccccCCcc-ccceEEEEchhhhhc
Q 019077          257 VA-FEKSDLLFVCMLKPLSFEITIYEK-EIQAAKWMPLEEFVK  297 (346)
Q Consensus       257 ~~-~~~~~~~fv~~l~~~~~~i~~~~~-Ei~~~~Wv~~eel~~  297 (346)
                      ++ ++.+.+...+.+...++.|..+.+ |.++++|++.+|+.+
T Consensus       255 WP~~p~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~~  297 (345)
T KOG3084|consen  255 WPLMPQSLMIGCLALAKLNGKISVDKDLELEDAQWFDREEVKS  297 (345)
T ss_pred             CCCCchHHHHHHHHHHhhCCccccCcchhhhhcccccHHHHHH
Confidence            44 332222221222223477888877 999999999998754

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.52  E-value=2e-13  Score=123.02  Aligned_cols=114  Identities=12%  Similarity=0.048  Sum_probs=86.1

Q ss_pred             eEEEEEEEeC-CCeEEEEeecCCCC------CCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc
Q 019077          186 IGVGGFVMND-KREVLVVKEKCPRS------CSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA  258 (346)
Q Consensus       186 v~V~avVin~-~~~VLLvrr~~~~~------~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~  258 (346)
                      .+|++++++. +++|||+++.+++.      .+-.|++|+|.+|+| ++++||+||++||||+.+..+..++.....+..
T Consensus        46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~  124 (191)
T PRK15009         46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG  124 (191)
T ss_pred             CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCcc
Confidence            4566777775 67999999998876      677899999999976 699999999999999999888877665555554


Q ss_pred             cceeEEEEEEEEecC--CccccCCccccceEEEEchhhhhcCCC
Q 019077          259 FEKSDLLFVCMLKPL--SFEITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       259 ~~~~~~~fv~~l~~~--~~~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                      .....++|++.....  ......+++|..++.|+|++++.++..
T Consensus       125 s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~  168 (191)
T PRK15009        125 VTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIK  168 (191)
T ss_pred             cCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHH
Confidence            455556666664211  111223467888999999999988753

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.52  E-value=7.1e-14  Score=124.33  Aligned_cols=108  Identities=15%  Similarity=0.281  Sum_probs=76.3

Q ss_pred             EEEEeCC--CeEEEEeec-CCCCCCCce-eeeeEEecCCCCHHHHHHHHHHHHhCCceeeeE---EEEEEe-ee--ccc-
Q 019077          190 GFVMNDK--REVLVVKEK-CPRSCSGMW-KIPTGYINKSEDLFSGAVREVKEETGVDTIFLE---MVAFRH-VH--LVA-  258 (346)
Q Consensus       190 avVin~~--~~VLLvrr~-~~~~~~g~W-~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~---ll~~~~-~~--~~~-  258 (346)
                      +++.|.+  ++||+.||. .+..++|.| .+|+|++++||++.+||+||++||||+++...+   .++... ..  ... 
T Consensus        39 ~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~  118 (180)
T cd03676          39 GYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGG  118 (180)
T ss_pred             EEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCc
Confidence            4566765  899999999 666789999 599999999999999999999999999987533   232111 11  111 


Q ss_pred             -cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077          259 -FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       259 -~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                       .....++|.+.+. .+..+.++++|+.++.|++++|+.++
T Consensus       119 ~~~e~~~~f~~~~~-~~~~~~~~~~Ev~~~~~~~~~el~~~  158 (180)
T cd03676         119 LQPEVEYVYDLELP-PDFIPAPQDGEVESFRLLTIDEVLRA  158 (180)
T ss_pred             EeeeEEEEEEEEcC-CCCeeCCCCCcEeEEEEECHHHHHHH
Confidence             1122333444332 22345567889999999999999765

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=4e-13  Score=111.93  Aligned_cols=57  Identities=28%  Similarity=0.360  Sum_probs=44.5

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceee
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF  245 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~  245 (346)
                      .+++++...+ .+||++|... ...|.|.||||++|+||++.+||.||++||||+++..
T Consensus         6 ~av~vl~~~~-~~lL~~r~~~-~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~   62 (118)
T cd04674           6 VVVALLPVDD-GLLVIRRGIE-PGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP   62 (118)
T ss_pred             EEEEEEEECC-CEEEEEeecC-CCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence            3334444444 4777776643 2579999999999999999999999999999998864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=2.6e-13  Score=113.09  Aligned_cols=100  Identities=24%  Similarity=0.279  Sum_probs=73.7

Q ss_pred             EEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEE
Q 019077          188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFV  267 (346)
Q Consensus       188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv  267 (346)
                      |.+++++ ++++||+++.     .+.|.+|||++++||++.+||.||++||||+.+.....++..............+|.
T Consensus         3 v~vi~~~-~~~vLl~~~~-----~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y~   76 (118)
T cd04665           3 VLVICFY-DDGLLLVRHK-----DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVYP   76 (118)
T ss_pred             EEEEEEE-CCEEEEEEeC-----CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEEE
Confidence            4445554 4799999886     357999999999999999999999999999999888888765544432233445565


Q ss_pred             EEEecCCccccCCccccceEEEEchhhh
Q 019077          268 CMLKPLSFEITIYEKEIQAAKWMPLEEF  295 (346)
Q Consensus       268 ~~l~~~~~~i~~~~~Ei~~~~Wv~~eel  295 (346)
                      +...  .........|+....|++.+..
T Consensus        77 a~~~--~~~~~~~~~E~~~~~~~~~~~~  102 (118)
T cd04665          77 AVSA--QLEEKASYLETDGPVLFKNEPE  102 (118)
T ss_pred             EEEE--ecccccccccccCcEEeccCCc
Confidence            5553  2222234689999999997654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=3e-13  Score=113.63  Aligned_cols=104  Identities=23%  Similarity=0.278  Sum_probs=66.1

Q ss_pred             EEEEEEEe---CCCeEEEEeecCC---CCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccc
Q 019077          187 GVGGFVMN---DKREVLVVKEKCP---RSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE  260 (346)
Q Consensus       187 ~V~avVin---~~~~VLLvrr~~~---~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~  260 (346)
                      ++++|+++   +..+|||+++...   ....+.|++|||+++.||++.+||+||++||||+++. ..++..... ....+
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~-~~~~~   79 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSL-KQSGG   79 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEE-ECCCC
Confidence            35666665   2357999987421   1356899999999999999999999999999999876 223222111 11112


Q ss_pred             eeEEEEEEE--------------EecCCccccCC-ccccceEEEEch
Q 019077          261 KSDLLFVCM--------------LKPLSFEITIY-EKEIQAAKWMPL  292 (346)
Q Consensus       261 ~~~~~fv~~--------------l~~~~~~i~~~-~~Ei~~~~Wv~~  292 (346)
                      ....+|++.              +...+++.... .+|..+++|+++
T Consensus        80 ~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~~  126 (126)
T cd04662          80 KVVHAWAVEADLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFDI  126 (126)
T ss_pred             eEEEEEEEEecCChhHeEEEEEEEEccCCCCccccCCccceeEeecC
Confidence            223333332              22223344443 478899999984

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.49  E-value=9.4e-13  Score=114.70  Aligned_cols=125  Identities=18%  Similarity=0.121  Sum_probs=85.6

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD  263 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~  263 (346)
                      +...|.++++.+ +++||+++.+     ..|.+|||++|+||++.+||.||++||||+.+.....++.+...........
T Consensus        23 ~~~~V~ii~~~~-~~~LL~~~~~-----~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~   96 (156)
T TIGR02705        23 NPNHVLVIPRYK-DQWLLTEHKR-----RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVK   96 (156)
T ss_pred             CCCEEEEEEEEC-CEEEEEEEcC-----CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEE
Confidence            334565555654 5899998863     3599999999999999999999999999999998888887655544333455


Q ss_pred             EEEEEEEecCCccccCCccccceEE-EEchhhhhcCCCCCcc---HHHHHHHHHHHHHhc
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAK-WMPLEEFVKQPFYLED---DMSRKVIDICIKAYD  319 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~-Wv~~eel~~l~~~~~~---~~~~~ii~~~l~~~~  319 (346)
                      .+|++....  ..  . .+|..+.. +++++++.+.......   .+-...+..+++.++
T Consensus        97 ~vf~A~~~~--~~--~-~~e~~E~~~~~~~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~~  151 (156)
T TIGR02705        97 DVYFAEVSA--LE--S-KDDYLETKGPVLLQEIPDIIKADPRFSFIMKDDVLLKCLERAK  151 (156)
T ss_pred             EEEEEEEec--cc--c-CCCceeeEeEEEHHHHHHHHhcCCcccEEEchHHHHHHHHHHH
Confidence            566666542  12  2 24444444 7999998776543321   134455666666654

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PLN02709 nudix hydrolase

Probab=99.48  E-value=5.1e-13  Score=122.28  Aligned_cols=114  Identities=21%  Similarity=0.266  Sum_probs=85.6

Q ss_pred             eEEEEEEEeC------CCeEEEEeecC-CCCCCCceeeeeEEecCCC-CHHHHHHHHHHHHhCCceeeeEEEEEEeeecc
Q 019077          186 IGVGGFVMND------KREVLVVKEKC-PRSCSGMWKIPTGYINKSE-DLFSGAVREVKEETGVDTIFLEMVAFRHVHLV  257 (346)
Q Consensus       186 v~V~avVin~------~~~VLLvrr~~-~~~~~g~W~lPGG~ve~GE-s~~eAA~REv~EETGl~v~~~~ll~~~~~~~~  257 (346)
                      .+|.+.++..      +.+|||++|.. ....+|.|+||||++|+|| ++.+||+||+.||+||....+++++.......
T Consensus        34 AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t  113 (222)
T PLN02709         34 SAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVN  113 (222)
T ss_pred             cEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeEC
Confidence            4455455532      34899999983 3357999999999999974 79999999999999999988898887655544


Q ss_pred             ccceeEEEEEEEEec-CCccccCCccccceEEEEchhhhhcCC
Q 019077          258 AFEKSDLLFVCMLKP-LSFEITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       258 ~~~~~~~~fv~~l~~-~~~~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      ..+....-|++.+.. ....+.++.+|++++.|+|++++.+..
T Consensus       114 ~sg~~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~~  156 (222)
T PLN02709        114 KKGMSVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKDK  156 (222)
T ss_pred             CCCCEEEEEEEEecCCCCccccCChhhhheeEEecHHHHhCCc
Confidence            445555666666542 123445678899999999999987654

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.41  E-value=2.6e-12  Score=114.97  Aligned_cols=111  Identities=13%  Similarity=0.120  Sum_probs=69.1

Q ss_pred             CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeE----------------EEEEEe-eecccc
Q 019077          197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE----------------MVAFRH-VHLVAF  259 (346)
Q Consensus       197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~----------------ll~~~~-~~~~~~  259 (346)
                      -+||+++|.    ..|.|.||||+||+||++.+||+||++||||+.+....                .+.++. ....+.
T Consensus        49 l~vLl~~r~----~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr  124 (186)
T cd03670          49 LQFVAIKRP----DSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPR  124 (186)
T ss_pred             eEEEEEEeC----CCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccccCCC
Confidence            478888886    45899999999999999999999999999976532210                111110 111111


Q ss_pred             ----c-eeEEEEEEEEecCC--ccccC-CccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077          260 ----E-KSDLLFVCMLKPLS--FEITI-YEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       260 ----~-~~~~~fv~~l~~~~--~~i~~-~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~  316 (346)
                          . ...+.|.+......  ....+ ..+|..+++|+++++++.+.+.|     ..+++.+++
T Consensus       125 ~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~dH-----~~Il~~a~~  184 (186)
T cd03670         125 NTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYANH-----SQFLKKVAE  184 (186)
T ss_pred             CCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccccccCH-----HHHHHHHHH
Confidence                1 12233333321000  11122 24578999999999999887776     456665553

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.41  E-value=3.6e-12  Score=118.86  Aligned_cols=130  Identities=15%  Similarity=0.131  Sum_probs=83.5

Q ss_pred             eEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCC-----------------HHHHHHHHHHHHhCCceee-
Q 019077          186 IGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSED-----------------LFSGAVREVKEETGVDTIF-  245 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs-----------------~~eAA~REv~EETGl~v~~-  245 (346)
                      .++.++|+|++|++||+||. .+..++|.|... +|++..||+                 ..+||+||++|||||.+.. 
T Consensus        57 ra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~  136 (247)
T PLN02552         57 RAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDV  136 (247)
T ss_pred             EEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCcccc
Confidence            46788999999999999998 666789999666 355444322                 6789999999999999643 


Q ss_pred             ----eEEEEEEee-eccc------c----ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCC-CC---ccHH
Q 019077          246 ----LEMVAFRHV-HLVA------F----EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF-YL---EDDM  306 (346)
Q Consensus       246 ----~~ll~~~~~-~~~~------~----~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~-~~---~~~~  306 (346)
                          ...++.... ....      .    ...+.+++. ......++.++++|+.+++|++++++.++.. .+   -...
T Consensus       137 ~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~~~~~~tpw  215 (247)
T PLN02552        137 PVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEMMRKESGLKLSPW  215 (247)
T ss_pred             ccccceeeeEEEEecccccccccCCCccceEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHHHhhcCCcccCHH
Confidence                333332111 1111      0    122233222 2223447788899999999999999998632 11   1225


Q ss_pred             HHHHHHHHHH
Q 019077          307 SRKVIDICIK  316 (346)
Q Consensus       307 ~~~ii~~~l~  316 (346)
                      ++.+++.++.
T Consensus       216 ~~~~~~~~l~  225 (247)
T PLN02552        216 FRLIVDNFLM  225 (247)
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.40  E-value=2.8e-12  Score=107.95  Aligned_cols=52  Identities=23%  Similarity=0.385  Sum_probs=41.8

Q ss_pred             EEEEEEeCCC--eEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCcee
Q 019077          188 VGGFVMNDKR--EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI  244 (346)
Q Consensus       188 V~avVin~~~--~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~  244 (346)
                      |.+++.+.++  +||+.+..    . +.|.+|||.+++||++.+||+||++||||+++.
T Consensus         3 ~~~~~~~~~~~~~ll~~r~~----~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~   56 (126)
T cd04663           3 CPAVLRRNGEVLELLVFEHP----L-AGFQIVKGTVEPGETPEAAALRELQEESGLPSF   56 (126)
T ss_pred             EEEEEEeCCceEEEEEEEcC----C-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeee
Confidence            4456666554  67666654    2 459999999999999999999999999999973

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.27  E-value=8.3e-11  Score=97.53  Aligned_cols=102  Identities=26%  Similarity=0.449  Sum_probs=66.4

Q ss_pred             CeEEEEeecCCCCCCCceeeeeEEecCCCCHHH-HHHHHHHHHhCCcee--eeEEEEEEeeecccc----ceeEEE-EEE
Q 019077          197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFS-GAVREVKEETGVDTI--FLEMVAFRHVHLVAF----EKSDLL-FVC  268 (346)
Q Consensus       197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~e-AA~REv~EETGl~v~--~~~ll~~~~~~~~~~----~~~~~~-fv~  268 (346)
                      ++||++++....   +.|.+|||++|+||++.+ ||+||++||||+.+.  ....++.........    ...... +.+
T Consensus        24 ~~vl~~~~~~~~---~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (161)
T COG0494          24 GEVLLAQRRDDG---GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREHRVFFVA  100 (161)
T ss_pred             CEEeEEEccccC---CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccceEEEEEEee
Confidence            789999988432   699999999999998888 999999999999988  445444433322221    111111 222


Q ss_pred             EEec-CCccccCC---ccccceEEEEchhhhhcCCCC
Q 019077          269 MLKP-LSFEITIY---EKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       269 ~l~~-~~~~i~~~---~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      .... ....+...   ..|...+.|++++++......
T Consensus       101 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  137 (161)
T COG0494         101 EVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLA  137 (161)
T ss_pred             eccccccccccccCCCcchhhceeeeeHHHccccccc
Confidence            1110 11111111   257899999999998877544

>PLN02791 Nudix hydrolase homolog

Probab=99.26  E-value=5.2e-11  Score=125.88  Aligned_cols=113  Identities=22%  Similarity=0.335  Sum_probs=81.7

Q ss_pred             eEEEEEEEeC-CCeEEEEeec-CCCCCCCceee-eeEEecCCCCHHHHHHHHHHHHhCCceee--eEEEEEEeee----c
Q 019077          186 IGVGGFVMND-KREVLVVKEK-CPRSCSGMWKI-PTGYINKSEDLFSGAVREVKEETGVDTIF--LEMVAFRHVH----L  256 (346)
Q Consensus       186 v~V~avVin~-~~~VLLvrr~-~~~~~~g~W~l-PGG~ve~GEs~~eAA~REv~EETGl~v~~--~~ll~~~~~~----~  256 (346)
                      .+|.++|+|. +++|||+||. .+..++|.|.+ +||+++.||+..+||+||+.||+||.+..  ..+++.....    .
T Consensus        33 rAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~  112 (770)
T PLN02791         33 RAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVIND  112 (770)
T ss_pred             EEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccC
Confidence            5678889996 6999999998 66678999999 69999999999999999999999998643  2333322111    1


Q ss_pred             c--ccceeEEEEEEEEecC--CccccCCccccceEEEEchhhhhcC
Q 019077          257 V--AFEKSDLLFVCMLKPL--SFEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       257 ~--~~~~~~~~fv~~l~~~--~~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      .  .....+.+|++.....  ..++.++++|+.+++|++++|+.++
T Consensus       113 g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~  158 (770)
T PLN02791        113 GKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSA  158 (770)
T ss_pred             CCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHH
Confidence            1  1112334455433111  1256778899999999999999754

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.19  E-value=3.2e-10  Score=92.46  Aligned_cols=110  Identities=18%  Similarity=0.289  Sum_probs=74.8

Q ss_pred             EEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEE
Q 019077          190 GFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCM  269 (346)
Q Consensus       190 avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~  269 (346)
                      ++++.+++++||.||...+.++|+|+||+|.++.+|+.+++..||+.||.++   ....++...+....+.....+|.+.
T Consensus         7 ~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~H~fth~~~~~~~~~~~   83 (118)
T cd03431           7 VVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL---SLEPLGTVKHTFTHFRLTLHVYLAR   83 (118)
T ss_pred             EEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc---ccccceeEEEecCCeEEEEEEEEEE
Confidence            3444557899999999778899999999999999999999999999998875   1122332223333333333445554


Q ss_pred             EecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHH
Q 019077          270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVID  312 (346)
Q Consensus       270 l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~  312 (346)
                      ..  ...     .+..+.+|++++++.+++++.   ..+++++
T Consensus        84 ~~--~~~-----~~~~~~~W~~~eel~~~~~p~---~~~kil~  116 (118)
T cd03431          84 LE--GDL-----LAPDEGRWVPLEELDEYALPT---VMRKILE  116 (118)
T ss_pred             Ee--CCC-----cCccccEEccHHHHhhCCCCH---HHHHHHH
Confidence            42  111     244678999999999998765   3445543

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.15  E-value=1.2e-10  Score=98.56  Aligned_cols=111  Identities=23%  Similarity=0.345  Sum_probs=73.5

Q ss_pred             ceEEEEEEEeCC---CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEE-EEEeeecccc-
Q 019077          185 QIGVGGFVMNDK---REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMV-AFRHVHLVAF-  259 (346)
Q Consensus       185 ~v~V~avVin~~---~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll-~~~~~~~~~~-  259 (346)
                      +..++++.+..+   -+|||+.-.++   +..|-+|+|++|++|+..+||.||+.||.|+.....+++ ++.+...... 
T Consensus         9 r~vagCi~~r~~~~~ieVLlvsSs~~---~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~   85 (145)
T KOG2839|consen    9 RLVAGCICYRSDKEKIEVLLVSSSKK---PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHR   85 (145)
T ss_pred             EEEEEeeeeeecCcceEEEEEecCCC---CCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhhc
Confidence            455666666633   38999998843   468999999999999999999999999999999888854 4432222211 


Q ss_pred             cee-EEEEEEEEecCCccccC-CccccceEEEEchhhhhcCC
Q 019077          260 EKS-DLLFVCMLKPLSFEITI-YEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       260 ~~~-~~~fv~~l~~~~~~i~~-~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      ... ..+|..... ..-+.-+ ...|..+.+|+.++|.....
T Consensus        86 ~~~k~~~~~l~v~-e~le~wp~~~~~~r~r~W~~ledA~~~~  126 (145)
T KOG2839|consen   86 TKPKGVMYVLAVT-EELEDWPESEHEFREREWLKLEDAIELC  126 (145)
T ss_pred             ccccceeehhhhh-hhcccChhhhcccceeEEeeHHHHHHHH
Confidence            111 122222211 1112222 23458899999999987764

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.93  E-value=2.6e-09  Score=97.14  Aligned_cols=113  Identities=22%  Similarity=0.271  Sum_probs=80.2

Q ss_pred             eEEEEEEEeC---CCeEEEEeec-CCCCCCCceeeeeEEecCCC-CHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccc
Q 019077          186 IGVGGFVMND---KREVLVVKEK-CPRSCSGMWKIPTGYINKSE-DLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE  260 (346)
Q Consensus       186 v~V~avVin~---~~~VLLvrr~-~~~~~~g~W~lPGG~ve~GE-s~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~  260 (346)
                      .+|...+++.   +-+||+.+|. .-..+.|.-+||||..|+++ +-..+|.||..||+|++.+...+++.........+
T Consensus        44 ~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~  123 (246)
T KOG3069|consen   44 AAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSG  123 (246)
T ss_pred             ccEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccC
Confidence            3444444543   2579999998 44568899999999999965 77789999999999999988888775444333333


Q ss_pred             eeEEEEEEEEecCC--ccccCCccccceEEEEchhhhhcC
Q 019077          261 KSDLLFVCMLKPLS--FEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       261 ~~~~~fv~~l~~~~--~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      ....-+++.+....  ....++..|+.++.|+|++++..-
T Consensus       124 ~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~  163 (246)
T KOG3069|consen  124 WSVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLP  163 (246)
T ss_pred             cccceeEEEEecccccccccCCchheeeeeeeeHHHHhhh
Confidence            33333444332221  345677899999999999998764

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=98.93  E-value=1e-08  Score=90.85  Aligned_cols=100  Identities=22%  Similarity=0.260  Sum_probs=68.5

Q ss_pred             CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeE--EEEEEeeeccccceeEEEEEEEEe---
Q 019077          197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE--MVAFRHVHLVAFEKSDLLFVCMLK---  271 (346)
Q Consensus       197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~--ll~~~~~~~~~~~~~~~~fv~~l~---  271 (346)
                      -.++|+++.+++.++-..++|+|.+|.||+++.||+||++||||+.-+...  ...+.++  ...+......++.++   
T Consensus        88 ~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DP--Gltn~~~~iv~v~idg~~  165 (225)
T KOG3041|consen   88 PYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDP--GLTNCNLCIVVVDIDGDV  165 (225)
T ss_pred             EEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCC--CCCCCceEEEEEEecCCC
Confidence            468899999998888899999999999999999999999999999844322  2333333  222222233333332   


Q ss_pred             cCCc--cccCCccccceEEEEchhhhhcC
Q 019077          272 PLSF--EITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       272 ~~~~--~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      +.+.  ...+++.|..++.-++..++.+.
T Consensus       166 pEnqrp~q~ledgEfIev~~i~~~~L~~~  194 (225)
T KOG3041|consen  166 PENQRPVQQLEDGEFIEVFLIPLSELWRE  194 (225)
T ss_pred             ccccCccccCCCCceEEEEEeeHHHHHHH
Confidence            1121  12345678888888888887653

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.90  E-value=1.2e-08  Score=83.83  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=65.3

Q ss_pred             EEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEE
Q 019077          190 GFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCM  269 (346)
Q Consensus       190 avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~  269 (346)
                      +++++.++++||.||...+.++|+|+||.-.++. +...+++.+.+.+..|+.+...+.++...+...++.....+|.+.
T Consensus         2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH~~~~~~~~~~~   80 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSHRRWTIHVYEVE   80 (114)
T ss_dssp             EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SSEEEEEEEEEEE
T ss_pred             EEEEEeCCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccceEEEEEEEEEE
Confidence            5788899999999999888999999999988874 334666666777888988776666665545555444455566665


Q ss_pred             EecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       270 l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      +.....      .+..+.+|++++++.+++++.
T Consensus        81 ~~~~~~------~~~~~~~W~~~~~l~~~~~p~  107 (114)
T PF14815_consen   81 VSADPP------AEPEEGQWVSLEELDQYPLPT  107 (114)
T ss_dssp             EE-SS----------TTEEEEEGGGGGGS---H
T ss_pred             ecCCCC------CCCCCcEEEEHHHHhhCCCCH
Confidence            542111      145788999999999998875

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.84  E-value=9.7e-09  Score=89.57  Aligned_cols=116  Identities=15%  Similarity=0.222  Sum_probs=85.9

Q ss_pred             eEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeEE---E-EEEeeeccc-
Q 019077          186 IGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLEM---V-AFRHVHLVA-  258 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~l---l-~~~~~~~~~-  258 (346)
                      .+..++++|.+|++|+.||. .+..+++.|.-- .|+--+||+..+|++|-+.+|+||+......   + .+.+..... 
T Consensus        34 rAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~  113 (185)
T COG1443          34 RAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPD  113 (185)
T ss_pred             hhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCC
Confidence            45678999999999999999 777899999865 4888899999999999999999999873222   2 122222222 


Q ss_pred             -cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          259 -FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       259 -~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                       .....+.++...+..+ .+.++++|+.+++|++.+++.++....
T Consensus       114 ~~~E~Eic~V~~~~~~~-~~~~npdEV~~~~wv~~e~l~~~~~~~  157 (185)
T COG1443         114 GIVENEICPVLAARLDS-ALDPNPDEVMDYRWVSPEDLKEMVDAT  157 (185)
T ss_pred             CcceeeeeeEEEEeecC-CCCCChHHhhheeccCHHHHHHhhcCC
Confidence             2233444554444233 667778999999999999998875443

>PLN02839 nudix hydrolase

Probab=98.69  E-value=5.2e-07  Score=87.97  Aligned_cols=112  Identities=20%  Similarity=0.300  Sum_probs=75.7

Q ss_pred             eEEEEEEEe-CCCeEEEEeec-CCCCCCCcee-eeeEEecCCCCHHHHHHHHHHHHhCCceee---eEEEEEEeeec-cc
Q 019077          186 IGVGGFVMN-DKREVLVVKEK-CPRSCSGMWK-IPTGYINKSEDLFSGAVREVKEETGVDTIF---LEMVAFRHVHL-VA  258 (346)
Q Consensus       186 v~V~avVin-~~~~VLLvrr~-~~~~~~g~W~-lPGG~ve~GEs~~eAA~REv~EETGl~v~~---~~ll~~~~~~~-~~  258 (346)
                      +.+.+++.. .+.++.+.||. .+..++|+|. +.+|.+..||++.++++||+.||.||....   ..-.+...... ..
T Consensus       206 VHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~  285 (372)
T PLN02839        206 VHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQ  285 (372)
T ss_pred             EEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcC
Confidence            334444443 33578888888 7778999998 568999999999999999999999997542   22223222111 11


Q ss_pred             cc-eeEEEEEEEEe-cCCccccCCccccceEEEEchhhhhc
Q 019077          259 FE-KSDLLFVCMLK-PLSFEITIYEKEIQAAKWMPLEEFVK  297 (346)
Q Consensus       259 ~~-~~~~~fv~~l~-~~~~~i~~~~~Ei~~~~Wv~~eel~~  297 (346)
                      .+ .....|++.+. +.+...++++.|++++.+++++|+.+
T Consensus       286 ~g~~~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~  326 (372)
T PLN02839        286 YCFKRDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVAN  326 (372)
T ss_pred             CccccCEEEEeeeecCCccccCCCccceeEEEEecHHHHHH
Confidence            11 23455566554 22333466789999999999999874

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.37  E-value=2.4e-06  Score=70.89  Aligned_cols=120  Identities=23%  Similarity=0.246  Sum_probs=70.2

Q ss_pred             EEEEEEEe-CC--CeEEEEeecCC---CCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee-EEEEEEeeecccc
Q 019077          187 GVGGFVMN-DK--REVLVVKEKCP---RSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL-EMVAFRHVHLVAF  259 (346)
Q Consensus       187 ~V~avVin-~~--~~VLLvrr~~~---~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~-~ll~~~~~~~~~~  259 (346)
                      .+++++.. ..  -.|||++--++   ....|.|++|.|....||++..||.||..||+||.++-. ..++..   ...-
T Consensus         5 SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~---kQ~G   81 (161)
T COG4119           5 SAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSL---KQSG   81 (161)
T ss_pred             cceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhh---ccCC
Confidence            34555554 22  34666654422   124689999999999999999999999999999988421 112211   1111


Q ss_pred             ceeEEEEEEEE----------------ecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHH
Q 019077          260 EKSDLLFVCML----------------KPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKV  310 (346)
Q Consensus       260 ~~~~~~fv~~l----------------~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~i  310 (346)
                      ++..+.|....                .+.++..+. =.|+..+.|+++++...-....+..++..+
T Consensus        82 GKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~-FPEVDRagWF~l~eAr~Kil~gQRpfldrL  147 (161)
T COG4119          82 GKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRK-FPEVDRAGWFPLAEARTKILKGQRPFLDRL  147 (161)
T ss_pred             CcEEEEEeeeeeeehhhhhcceeeeecCCCCCcccc-CcccccccceecHHHHhHHhhccchHHHHH
Confidence            23333333221                122222111 247889999999998765554443333333

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.78  E-value=0.00013  Score=66.06  Aligned_cols=40  Identities=33%  Similarity=0.498  Sum_probs=35.8

Q ss_pred             CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhC
Q 019077          197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETG  240 (346)
Q Consensus       197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETG  240 (346)
                      -+++.+||.    ..+.|.+|||.||+||.+-.+.+||+.||.=
T Consensus       139 le~vavkr~----d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  139 LEFVAVKRP----DNGEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             eEEEEEecC----CCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            467788887    6789999999999999999999999999974

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.67  E-value=7.5e-05  Score=66.79  Aligned_cols=130  Identities=14%  Similarity=0.204  Sum_probs=85.3

Q ss_pred             eEEEEEEEeCCCeEEEEeec-CCCCCCCceee---------eeEEec-CCCCHHHHHHHHHHHHhCCceeeeE-----EE
Q 019077          186 IGVGGFVMNDKREVLVVKEK-CPRSCSGMWKI---------PTGYIN-KSEDLFSGAVREVKEETGVDTIFLE-----MV  249 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~-~~~~~~g~W~l---------PGG~ve-~GEs~~eAA~REv~EETGl~v~~~~-----ll  249 (346)
                      .+..++++|.++++||+||. .+-.+++.|.-         |+..-+ .+..+..||+|-+.-|+||..+.+.     ++
T Consensus        53 RaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~l  132 (225)
T KOG0142|consen   53 RAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFL  132 (225)
T ss_pred             heeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccc
Confidence            45678999999999999998 55567787762         222221 1346789999999999999876543     34


Q ss_pred             EEEeee---ccccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCcc---HHHHHHHHHHHH
Q 019077          250 AFRHVH---LVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED---DMSRKVIDICIK  316 (346)
Q Consensus       250 ~~~~~~---~~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~---~~~~~ii~~~l~  316 (346)
                      +..+..   ...+|...+-|+..+.. +-.++++++|+.+++|++.+|+..+--.+..   ..++.+.+.++-
T Consensus       133 trihYkA~sdg~wGEhEiDYiL~~~~-~~~~nPnpnEv~e~ryvs~eelkel~~~~~~~~TPWfkli~~~~l~  204 (225)
T KOG0142|consen  133 TRIHYKAPSDGIWGEHEIDYILFLVK-DVTLNPNPNEVSEIRYVSREELKELVAKASAGFTPWFKLISENFLF  204 (225)
T ss_pred             eeeeeecCCCCCcccceeeEEEEEec-cCCCCCChhhhhHhheecHHHHHHHHhccccCCChHHHHHHHHHHH
Confidence            333221   22345445555544442 4567778899999999999999876332221   266666665543

>PRK10880 adenine DNA glycosylase; Provisional

Probab=97.43  E-value=0.0008  Score=66.15  Aligned_cols=113  Identities=11%  Similarity=0.077  Sum_probs=61.7

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL  265 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~  265 (346)
                      ....++++.+++++|+.||...+.++|+|+||..  +..     ...++..|+.|+.......++...+...++......
T Consensus       231 ~~~~~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~H~fTH~~~~~~~  303 (350)
T PRK10880        231 RTGYFLLLQHGDEVWLEQRPPSGLWGGLFCFPQF--ADE-----EELRQWLAQRGIAADNLTQLTAFRHTFSHFHLDIVP  303 (350)
T ss_pred             EEEEEEEEEECCEEEEEECCccChhhccccCCCC--cch-----hhHHHHHHhcCCchhhhcccCceEEEEeeEEEEEEE
Confidence            3444555666789999999977889999999963  211     124566688887532221122222222222212223


Q ss_pred             EEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHH
Q 019077          266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDI  313 (346)
Q Consensus       266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~  313 (346)
                      |.+...  ...... .  ..+..|++++++.+++++.   ..+++++.
T Consensus       304 ~~~~~~--~~~~~~-~--~~~~~w~~~~~~~~~~~p~---~~~k~l~~  343 (350)
T PRK10880        304 MWLPVS--SFTGCM-D--EGNGLWYNLAQPPSVGLAA---PVERLLQQ  343 (350)
T ss_pred             EEEEcc--cccccc-C--CcCCeEechHHhcccCCcH---HHHHHHHH
Confidence            333221  110000 1  1234699999999998876   44555543

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.37  E-value=0.0012  Score=57.40  Aligned_cols=107  Identities=21%  Similarity=0.275  Sum_probs=73.0

Q ss_pred             EEEEeCCCeEEEEeecCCC---CCCCceeee-eEEecCCCC---HHH----HHHHHHHHHhCCc---eeeeEEEEEEeee
Q 019077          190 GFVMNDKREVLVVKEKCPR---SCSGMWKIP-TGYINKSED---LFS----GAVREVKEETGVD---TIFLEMVAFRHVH  255 (346)
Q Consensus       190 avVin~~~~VLLvrr~~~~---~~~g~W~lP-GG~ve~GEs---~~e----AA~REv~EETGl~---v~~~~ll~~~~~~  255 (346)
                      +++.| .++||+-.|-..+   ...+.+++- ||++..++.   ..+    .+.||+.||.++.   ......+++....
T Consensus        66 vvi~~-edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd  144 (203)
T COG4112          66 VVIMD-EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDD  144 (203)
T ss_pred             EEEec-CCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCC
Confidence            34444 4599999887221   224566654 899987653   222    3679999999998   5557778887666


Q ss_pred             ccccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhc
Q 019077          256 LVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK  297 (346)
Q Consensus       256 ~~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~  297 (346)
                      ....++.++-.++..+....++...+.+.-+.+|+.++++.+
T Consensus       145 ~neVgkVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~  186 (203)
T COG4112         145 TNEVGKVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             CcccceEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHH
Confidence            666666666655555433344555677788999999999987

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.05  E-value=9.7e-05  Score=70.66  Aligned_cols=106  Identities=26%  Similarity=0.322  Sum_probs=67.2

Q ss_pred             cceEEEEEEEeCC-CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee--EEEEEEeeeccccc
Q 019077          184 HQIGVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL--EMVAFRHVHLVAFE  260 (346)
Q Consensus       184 ~~v~V~avVin~~-~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~--~ll~~~~~~~~~~~  260 (346)
                      ..+..+++++|.. .++||++.-    ....|.+|-|++...|+-.++|+|||.||||.+....  +..++   .....+
T Consensus        81 ~iPv~ga~ild~~~sr~llv~g~----qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~I---e~nI~d  153 (348)
T KOG2937|consen   81 RIPVRGAIILDEKRSRCLLVKGW----QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGI---ETNIRD  153 (348)
T ss_pred             CCCCchHhhhhhhhhhhheeece----ecccccccCccccccchhhhcchhcccchhhcCHHHHhccccCc---ccchhh
Confidence            3345677888865 789998876    3356999999999999999999999999999988531  11111   111111


Q ss_pred             eeEEEEEEEEecCCccccCC-ccccceEEEEchhhhh
Q 019077          261 KSDLLFVCMLKPLSFEITIY-EKEIQAAKWMPLEEFV  296 (346)
Q Consensus       261 ~~~~~fv~~l~~~~~~i~~~-~~Ei~~~~Wv~~eel~  296 (346)
                      .....|+.-....+..+.+. -.|++.+.|..++++.
T Consensus       154 q~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~  190 (348)
T KOG2937|consen  154 QLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLV  190 (348)
T ss_pred             ceeeeeeeccceeeeecchhhhccccceeeeehhhhc
Confidence            12222222111111111111 3588999999999983

>PRK13910 DNA glycosylase MutY; Provisional

Probab=95.44  E-value=0.1  Score=50.06  Aligned_cols=29  Identities=21%  Similarity=0.368  Sum_probs=21.8

Q ss_pred             EEEEEEeCCCeEEEEeecCCCCCCCceeeee
Q 019077          188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPT  218 (346)
Q Consensus       188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPG  218 (346)
                      ..++++ .++++||.||. .+.++|+|+||+
T Consensus       189 ~~~~~~-~~~~~ll~kr~-~~l~~gl~~fP~  217 (289)
T PRK13910        189 YLGVVI-QNNQIALEKIE-QKLYLGMHHFPN  217 (289)
T ss_pred             EEEEEE-ECCEEEEEECC-CchhcccccCCC
Confidence            333444 46789999885 568999999996

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=94.92  E-value=0.086  Score=50.21  Aligned_cols=114  Identities=18%  Similarity=0.103  Sum_probs=72.5

Q ss_pred             eEEEEEEEe-CCCeEEEEeecCCCCCCC---------------------------ceeeeeEEecCCCCHHHHHHHHHHH
Q 019077          186 IGVGGFVMN-DKREVLVVKEKCPRSCSG---------------------------MWKIPTGYINKSEDLFSGAVREVKE  237 (346)
Q Consensus       186 v~V~avVin-~~~~VLLvrr~~~~~~~g---------------------------~W~lPGG~ve~GEs~~eAA~REv~E  237 (346)
                      -.|.++++| ...++.|+|+.+++.+.|                           ..+|-.|.|+..-+..+-|.||..|
T Consensus       230 dSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e~ve  309 (405)
T KOG4432|consen  230 DSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARESVE  309 (405)
T ss_pred             CceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHHHHH
Confidence            457778887 345666666554433222                           2345578888888899999999999


Q ss_pred             HhCCceeeeE--EEEEEeeeccccceeEEEEEEEEecCC----ccccCCccccceEEEEchhhhhcCC
Q 019077          238 ETGVDTIFLE--MVAFRHVHLVAFEKSDLLFVCMLKPLS----FEITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       238 ETGl~v~~~~--ll~~~~~~~~~~~~~~~~fv~~l~~~~----~~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      |.|+++...+  .+..+-+.....+-...+|+|.+....    +--..+++|+.++.-+++++++.+.
T Consensus       310 ecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~  377 (405)
T KOG4432|consen  310 ECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLY  377 (405)
T ss_pred             HhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHH
Confidence            9999986543  333333333334455667777664322    1122345678888889999987653

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=94.91  E-value=0.043  Score=52.16  Aligned_cols=86  Identities=16%  Similarity=0.140  Sum_probs=56.6

Q ss_pred             eEEEEEEEeCC-CeEEEEeecCCCCC-------------------------CCceeeeeEEecCCCCHHHHHHHHHHHHh
Q 019077          186 IGVGGFVMNDK-REVLVVKEKCPRSC-------------------------SGMWKIPTGYINKSEDLFSGAVREVKEET  239 (346)
Q Consensus       186 v~V~avVin~~-~~VLLvrr~~~~~~-------------------------~g~W~lPGG~ve~GEs~~eAA~REv~EET  239 (346)
                      -+|.+++++.+ .++|++|+.++...                         +-..++-+|.||..-++.+-|..||.||.
T Consensus        27 ~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eec  106 (405)
T KOG4432|consen   27 SSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEEC  106 (405)
T ss_pred             cceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHh
Confidence            45666666654 56777766533221                         11345779999999999999999999999


Q ss_pred             CCceeeeEEEEEEeeecc--ccceeEEEEEEEEe
Q 019077          240 GVDTIFLEMVAFRHVHLV--AFEKSDLLFVCMLK  271 (346)
Q Consensus       240 Gl~v~~~~ll~~~~~~~~--~~~~~~~~fv~~l~  271 (346)
                      |+++...++..+......  ..+.....|+|.+.
T Consensus       107 gy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~  140 (405)
T KOG4432|consen  107 GYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEID  140 (405)
T ss_pred             CCcCChhHceEEEEEEeccccCccchheeeeecc
Confidence            999988766544333222  22334456777654

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=94.44  E-value=0.14  Score=47.61  Aligned_cols=109  Identities=17%  Similarity=0.255  Sum_probs=68.0

Q ss_pred             eEEEEEEEeCC---CeEEEEeec-CCCCCCCcee-eeeEEecCCCCHHHHHHHHHHHHhCCceeeeEE-E--E---EEee
Q 019077          186 IGVGGFVMNDK---REVLVVKEK-CPRSCSGMWK-IPTGYINKSEDLFSGAVREVKEETGVDTIFLEM-V--A---FRHV  254 (346)
Q Consensus       186 v~V~avVin~~---~~VLLvrr~-~~~~~~g~W~-lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~l-l--~---~~~~  254 (346)
                      +.+.+.|.+.+   -++.+.||+ .+..|+|.|. +.+|.+--|-.+.++|+.|..||..+......- +  |   +...
T Consensus       134 vhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~  213 (306)
T KOG4313|consen  134 VHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKF  213 (306)
T ss_pred             eeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEee
Confidence            34445555544   357788887 5567899997 668999999999999999999999998733221 1  1   1111


Q ss_pred             eccccceeEEEEEEEEecCCcccc--CCccccceEEEEchhhh
Q 019077          255 HLVAFEKSDLLFVCMLKPLSFEIT--IYEKEIQAAKWMPLEEF  295 (346)
Q Consensus       255 ~~~~~~~~~~~fv~~l~~~~~~i~--~~~~Ei~~~~Wv~~eel  295 (346)
                      .....-....-|++.+. .+.++.  +.+.|++.+..+++.|.
T Consensus       214 esr~~~~pe~qYVfDL~-l~~d~iP~~nDGEV~~F~Lltl~~~  255 (306)
T KOG4313|consen  214 ESRQGLFPETQYVFDLE-LPLDFIPQNNDGEVQAFELLTLKDC  255 (306)
T ss_pred             ehhhccCccceEEEecc-CchhhcCCCCCCceeeEeeecHHHH
Confidence            11110112345666654 233333  34567888777776654

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=93.85  E-value=0.18  Score=49.25  Aligned_cols=112  Identities=15%  Similarity=0.157  Sum_probs=64.1

Q ss_pred             CCCCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc
Q 019077          178 LPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV  257 (346)
Q Consensus       178 lp~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~  257 (346)
                      .|.....+...+.++.+.+++++|.+|...+...|+|.+|....+.  ..     .+...+.|+..   +.++...+...
T Consensus       228 ~~k~~~~~~~~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~--~~-----~~~~~~~~~~~---~~~~~~~H~ft  297 (342)
T COG1194         228 KPKKKLPRRFAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA--DL-----LDWLAADGLAA---EPLGAFRHTFT  297 (342)
T ss_pred             CcccccchheeeEEEEccCcchhhhhCcccCceecccccccccccc--hh-----hhHhhhccccc---ccccceeeeee
Confidence            3344444566777778888999999999888899999999976544  22     22233334433   22322222222


Q ss_pred             ccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHH
Q 019077          258 AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDI  313 (346)
Q Consensus       258 ~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~  313 (346)
                      .+. ..+.+....  ..       .+. +..|++++++...+++.   .++++++.
T Consensus       298 h~~-l~i~~~a~~--~~-------~~~-~~~w~~~~~~~~~~l~~---p~~k~l~~  339 (342)
T COG1194         298 HFR-LTIELRASA--SL-------VLS-DGRWYNLSDLESIGLPA---PVKKLLQQ  339 (342)
T ss_pred             EEE-EEEEEEeec--cc-------CCC-CceeccccccccccccH---HHHHHHHH
Confidence            221 112222211  11       222 78999999999887765   44555544

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=93.47  E-value=0.2  Score=44.95  Aligned_cols=41  Identities=24%  Similarity=0.460  Sum_probs=30.7

Q ss_pred             CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCc
Q 019077          197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD  242 (346)
Q Consensus       197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~  242 (346)
                      -.|||.|..     ...|.||||.+.+||+..++..|.+.+-.|..
T Consensus        58 PHvLLLq~~-----~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~   98 (188)
T PF13869_consen   58 PHVLLLQIG-----NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE   98 (188)
T ss_dssp             EEEEEEEET-----TTEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred             cEEEEEecc-----CccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence            579999864     34899999999999999999999999999975

...

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=90.18  E-value=0.56  Score=41.25  Aligned_cols=39  Identities=28%  Similarity=0.460  Sum_probs=34.7

Q ss_pred             CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhC
Q 019077          197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETG  240 (346)
Q Consensus       197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETG  240 (346)
                      -.|||.|-.     .-.+++|||.+++||+-.+...|-+-|-.|
T Consensus        84 PHvLLLQig-----~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   84 PHVLLLQIG-----NTFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             CeEEEEeeC-----CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            578887753     468999999999999999999999999999

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=85.10  E-value=1.9  Score=41.14  Aligned_cols=32  Identities=19%  Similarity=0.103  Sum_probs=25.0

Q ss_pred             EEEEEEeCCCeEEEEeecCCCCCCCceeeeeE
Q 019077          188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTG  219 (346)
Q Consensus       188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG  219 (346)
                      ...++.+.++++|+++|...+..+|+|+||+.
T Consensus       230 ~~~~~~~~~~~~~~~~r~~~~~~~gl~~~p~~  261 (275)
T TIGR01084       230 YFLVLQNYDGEVLLEQRPEKGLWGGLYCFPQF  261 (275)
T ss_pred             EEEEEEeCCCeEEEEeCCCCchhhccccCCCC
Confidence            33344456789999999977789999999973

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=82.96  E-value=4  Score=38.23  Aligned_cols=98  Identities=17%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             CeEEEEeecCCCCCCCceeeeeEEe-cCCCCHHHHHHHHHHHHhCCceeeeEE----EEEEeeec-----ccc--ceeEE
Q 019077          197 REVLVVKEKCPRSCSGMWKIPTGYI-NKSEDLFSGAVREVKEETGVDTIFLEM----VAFRHVHL-----VAF--EKSDL  264 (346)
Q Consensus       197 ~~VLLvrr~~~~~~~g~W~lPGG~v-e~GEs~~eAA~REv~EETGl~v~~~~l----l~~~~~~~-----~~~--~~~~~  264 (346)
                      .=+|||+++-.  ..+.|.||-+.. +.|+++..+|.|++++-.|=.....-+    ++......     ...  +....
T Consensus       139 ~LyLLV~~k~g--~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~f  216 (263)
T KOG4548|consen  139 KLYLLVKRKFG--KSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVF  216 (263)
T ss_pred             eEEEEEeeccC--ccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeE
Confidence            34788886511  357999999999 999999999999999988855432211    22110000     011  11233


Q ss_pred             EEEEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077          265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      +|-|.+.+.+ ..  +..-..+..|++-+++.+..
T Consensus       217 f~k~~lv~~~-~~--kn~n~edfvWvTkdel~e~l  248 (263)
T KOG4548|consen  217 FFKASLVANS-NQ--KNQNKEDFVWVTKDELGEKL  248 (263)
T ss_pred             Eeeeeecccc-ch--hcccccceEEechHHHhhhc
Confidence            4444443221 11  22334569999999998864

>COG4111 Uncharacterized conserved protein [General function prediction only]

Probab=80.59  E-value=7.2  Score=36.70  Aligned_cols=56  Identities=21%  Similarity=0.340  Sum_probs=36.9

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHH-HHHHhCCceeeeEEE
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVRE-VKEETGVDTIFLEMV  249 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~RE-v~EETGl~v~~~~ll  249 (346)
                      ++|.+.|.+..-+||-|.+..        .+|.|-.|++-.-.++-.|+ |.+.|+.....++.+
T Consensus        26 iaVvvAv~~~~p~VLtV~q~~--------aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQL   82 (322)
T COG4111          26 IAVVVAVTDGGPRVLTVRQGA--------ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQL   82 (322)
T ss_pred             eEEEEEEcCCCceEEEecccc--------cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhh
Confidence            334434444556888887651        28999999986566666666 677788877665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	346
3h95_A	199	Crystal Structure Of The Nudix Domain Of Nudt6 Leng		6e-18
1vc8_A	126	Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydr		5e-07
1vc9_A	126	Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydr		1e-06
3grn_A	153	Crystal Structure Of Mutt Protein From Methanosarci		1e-04
3r03_A	144	The Crystal Structure Of Nudix Hydrolase From Rhodo		8e-04

>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6 Length = 199

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 181 SPSHQIGVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEET 239
           S SHQ+GV G V ++  R++LVV+++       MWK P G     ED+   AVREV EET
Sbjct: 22  SMSHQVGVAGAVFDESTRKILVVQDR--NKLKNMWKFPGGLSEPEEDIGDTAVREVFEET 79
Query: 240 GVDTIFLEMVAFRHVHLV--AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
           G+ + F  +++ R  H    AF KSD+  +C LKP SF I   ++E    +WM L +  K
Sbjct: 80  GIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAK 139
Query: 298 QPFYLEDDMSRKVIDICIKAYDDRFN--GFIAHELASKLDGKLSCLYHND 345
                   ++ +V  + +  Y + F+       EL +   G    LYH +
Sbjct: 140 TEN--TTPITSRVARLLLYGYREGFDKIDLTVEELPAVYTGLFYKLYHKE 187

>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase Ndx1-Ap6a Complex Length = 126

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT- 243
           ++G GG V N KREVL+++++      G W  P G+    E L   AVREV EETGV   
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRM-----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56
Query: 244 IFLEMVAFRHVHLVAFEKSDLLFVC 268
           + L +   R+V+    E+    F+ 
Sbjct: 57  VLLPLYPTRYVNPKGVEREVHWFLM 81

>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase E50q Mutant- Mg2+-atp Complex Length = 126

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT- 243
           ++G GG V N KREVL+++++      G W  P G+    E L   AVREV E+TGV   
Sbjct: 2   ELGAGGVVFNAKREVLLLRDRM-----GFWVFPKGHPEPGESLEEAAVREVWEQTGVRAE 56
Query: 244 IFLEMVAFRHVHLVAFEKSDLLFVC 268
           + L +   R+V+    E+    F+ 
Sbjct: 57  VLLPLYPTRYVNPKGVEREVHWFLM 81

>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina Mazei Go1 Length = 153

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 186 IGVGGFVMNDKREVLVVKE-KCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
           I V   + N+K E L+++  +  R+ +G W +P G +N  E L  G  REV EETG+  +
Sbjct: 9   ISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMV 68

>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From Rhodospirillum Rubrum Length = 144

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 7/122 (5%)
Query: 180 GSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEET 239
           G P   +     +  D R VL+ +    +S +G+W+ P G +   E   +  VRE+ EE 
Sbjct: 4   GLPILLVTAAALIDPDGR-VLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEEL 62
Query: 240 GVDTIF--LEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
           GVDT    L  +AF       F     L+ C     S+      +E Q   W+  E   +
Sbjct: 63  GVDTRASCLAPLAFASHSYDTFHLLXPLYACR----SWRGRATAREGQTLAWVRAERLRE 118
Query: 298 QP 299
            P
Sbjct: 119 YP 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	346
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	7e-52
3fxt_A	113	Nucleoside diphosphate-linked moiety X motif 6; nu	7e-31
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	3e-23
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	4e-23
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	1e-22
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	2e-22
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	1e-19
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	2e-17
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	6e-17
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	4e-16
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	8e-16
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	9e-16
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	1e-15
3grn_A	153	MUTT related protein; structural genomics, hydrola	1e-15
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	7e-15
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	8e-15
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	2e-14
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	2e-13
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	1e-12
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	1e-12
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	2e-12
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	6e-12
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	9e-12
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	1e-11
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	2e-11
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	2e-11
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	2e-11
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	6e-11
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	7e-11
2b06_A	155	MUTT/nudix family protein; structural genomics, P	9e-11
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	2e-10
3f13_A	163	Putative nudix hydrolase family member; structural	2e-10
3exq_A	161	Nudix family hydrolase; protein structure initiati	6e-10
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	2e-09
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	2e-09
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	7e-09
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	1e-08
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	2e-08
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	2e-08
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	3e-08
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	4e-08
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	8e-08
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	3e-07
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	4e-07
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	4e-07
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	1e-06
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	1e-06
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	2e-06
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	9e-06
2fb1_A	226	Conserved hypothetical protein; structural genomic	1e-05
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	1e-05
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	2e-05
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	5e-05
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	9e-05

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score =  169 bits (430), Expect = 7e-52
 Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 15/192 (7%)

Query: 157 YHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDK-REVLVVKEKCPRSCSGMWK 215
           +HH   G  + T        +   S SHQ+GV G V ++  R++LVV+++       MWK
Sbjct: 4   HHHHSSGVDLGT------ENLYFQSMSHQVGVAGAVFDESTRKILVVQDR--NKLKNMWK 55

Query: 216 IPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV--AFEKSDLLFVCMLKPL 273
            P G     ED+   AVREV EETG+ + F  +++ R  H    AF KSD+  +C LKP 
Sbjct: 56  FPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPY 115

Query: 274 SFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNG--FIAHELA 331
           SF I   ++E    +WM L +  K        ++ +V  + +  Y + F+       EL 
Sbjct: 116 SFTINFCQEECLRCEWMDLNDLAKTENTTP--ITSRVARLLLYGYREGFDKIDLTVEELP 173

Query: 332 SKLDGKLSCLYH 343
           +   G    LYH
Sbjct: 174 AVYTGLFYKLYH 185

>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens} Length = 113

 Score =  112 bits (281), Expect = 7e-31
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 75  INVLSPDITAPIFVPEFLDPFDDEYDGVIINPENLPSS----ANAFVSALRASLSNWKLK 130
            + +        F    L    D + G+ +    L +     A AF   L+A++  W+ +
Sbjct: 8   SSGVDLGTENLYFQSMDLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSE 67

Query: 131 GKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEP 175
           G+  VWL I   Q+  +  A   GF +HHAE     LT W+   P
Sbjct: 68  GRTAVWLHIPILQSRFIAPAASLGFCFHHAESDSSTLTLWLREGP 112

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 93.3 bits (232), Expect = 3e-23
 Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 15/150 (10%)

Query: 172 PVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGA 231
           P  P  L  +  +   V    ++++ EVL+++E   R C G W +P G +   E +    
Sbjct: 9   PPAPVRLRKNVCY--VVLAVFLSEQDEVLLIQEA-KRECRGSWYLPAGRMEPGETIVEAL 65

Query: 232 VREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEK---EIQAAK 288
            REVKEE G+      +++           S + FV + +P    +   ++   E   A 
Sbjct: 66  QREVKEEAGLHCEPETLLSVEERG-----PSWVRFVFLARPTGGILKTSKEADAESLQAA 120

Query: 289 WMPLEEFVKQPFYLEDDMSRKVIDICIKAY 318
           W P       P  L       +++     Y
Sbjct: 121 WYPRTSL---PTPLRAHDILHLVE-LAAQY 146

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 92.9 bits (231), Expect = 4e-23
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 8/133 (6%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
           + V   V  + +  LVV+E        +W  P G++   E L   A RE+ EETG+    
Sbjct: 6   VTVACVVHAEGK-FLVVEETIN--GKALWNQPAGHLEADETLVEAAARELWEETGISAQP 62

Query: 246 LEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDD 305
              +                   +          ++ +I   +W+  EE ++        
Sbjct: 63  QHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASN----L 118

Query: 306 MSRKVIDICIKAY 318
            S  V +  I+ Y
Sbjct: 119 RSPLVAE-SIRCY 130

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 91.4 bits (227), Expect = 1e-22
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
           + V   +  D +  L+V+E  PR  +     P G++   E +     REV EETG   + 
Sbjct: 9   VTVAAVIEQDDK-YLLVEEI-PRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLP 66

Query: 246 LEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITI-YEKEIQAAKWMPLEEFVKQPFYLED 304
             +    H    +   + L F    + +SF+     +  I  A W  ++E   +      
Sbjct: 67  EVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRT 126

Query: 305 DMSRKVID 312
            +  + I+
Sbjct: 127 PLVMQCIE 134

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 91.0 bits (226), Expect = 2e-22
 Identities = 31/150 (20%), Positives = 61/150 (40%), Gaps = 12/150 (8%)

Query: 173 VEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEK---CPRSCSGMWKIPTGYINKSEDLFS 229
           +E       P      G  ++N++ ++L+V+EK        +G+W IP+G +   E+   
Sbjct: 1   MEHDERTHVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQD 60

Query: 230 GAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL----LFVCMLKPLSFEITIYEKEIQ 285
            AVRE  EETG+    ++ +     +L  F    L    +++   +P       +  EI 
Sbjct: 61  AAVREACEETGLRVRPVKFLG---AYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIA 117

Query: 286 AAKWMPLEEFVKQPFYLEDDMSRKVIDICI 315
            A ++  E+F +        +      +  
Sbjct: 118 EASFVSREDFAQLYAA--GQIRMYQTKLFY 145

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 82.7 bits (205), Expect = 1e-19
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 13/129 (10%)

Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
           ++G GG V N KREVL+++++      G W  P G+    E L   AVREV EETGV   
Sbjct: 2   ELGAGGVVFNAKREVLLLRDR-----MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56

Query: 245 FLEMVA-FRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE 303
            L  +   R+V+    E+    F+ M    +  +   E+ +  A W   EE      + E
Sbjct: 57  VLLPLYPTRYVNPKGVEREVHWFL-MRGEGAPRL---EEGMTGAGWFSPEEARALLAFPE 112

Query: 304 DDMSRKVID 312
           D     +++
Sbjct: 113 D---LGLLE 118

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 80.1 bits (197), Expect = 2e-17
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 188 VGGFVMN-DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL 246
            G  +++   ++ ++VK       S  W  P G I+K E     A+REV EETG D    
Sbjct: 104 RGAIMLDMSMQQCVLVKG---WKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD-CSS 159

Query: 247 EMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIY-EKEIQAAKWMPLEEFVK 297
            +     + +    ++  L++     L         KEI   +W  L +   
Sbjct: 160 RINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPT 211

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 76.0 bits (187), Expect = 6e-17
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 188 VGGFVMNDKR-EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL 246
            G  + N+   ++L+V+     + S  W  P G I+K E+     +REVKEE G D +  
Sbjct: 7   RGAAIFNENLSKILLVQ----GTESDSWSFPRGKISKDENDIDCCIREVKEEIGFD-LTD 61

Query: 247 EMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIY-EKEIQAAKWMPLEEFVK 297
            +   + +      K+  +F+       F        EI   +W   ++  K
Sbjct: 62  YIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISK 113

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 74.2 bits (182), Expect = 4e-16
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 181 SPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETG 240
             +  + +   V N + E L+ K    R   G W +P G + K E L +   R    E G
Sbjct: 14  RSTPLVSLDFIVENSRGEFLLGKRT-NRPAQGYWFVPGGRVQKDETLEAAFERLTMAELG 72

Query: 241 VDTIFLE---MVAFRHVHLVAFEKSD-----LLFVCMLKPLSFEITIYEKEIQAAKWMPL 292
           +            ++H +   F  +D     ++     +    E+ + +++    +W+  
Sbjct: 73  LRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTS 132

Query: 293 EEFVKQPF 300
           +  +    
Sbjct: 133 DALLASDN 140

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 72.8 bits (179), Expect = 8e-16
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 15/161 (9%)

Query: 156 SYHHAEPGYVMLTYWIPVEPCM-LPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMW 214
           ++HH      M T     +    +  +   ++G G  ++ D R +L++K K     +G W
Sbjct: 2   AHHHHHH---MGTLEAQTQGPGSMQHTEQPRVGCGAAIVRDGR-ILLIKRKRAPE-AGCW 56

Query: 215 KIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVA-FRHVHLV-AFEKSDLLFVCMLKP 272
            +P G ++  E +     RE++EE G+      ++    H+           +++     
Sbjct: 57  GLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAANGEHWVAPVYLA--HA 114

Query: 273 LSFEITIYE-KEIQAAKWMPLEEFVKQPFYLEDDMSRKVID 312
            S E  + E    +A  W  L++    P  L    +R  ++
Sbjct: 115 FSGEPRVVEPDRHEALGWFALDDL---PQPLTHA-TRIALE 151

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 72.5 bits (178), Expect = 9e-16
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 11/130 (8%)

Query: 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL 246
            +   V N+  E L+++          W  P G++   ED    A+R  +EE G++   L
Sbjct: 19  CLIPKVDNNAIEFLLLQA---SDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75

Query: 247 EMVAFRHVHLVAFEKSDL----LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL 302
            ++      L    ++       ++  +K    EI +   E QA +W+ LEE  +   + 
Sbjct: 76  TIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRL-SHEHQAYRWLGLEEACQLAQFK 134

Query: 303 EDDMSRKVID 312
           E    +  + 
Sbjct: 135 EM---KAALQ 141

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 4/118 (3%)

Query: 184 HQIGVGGFVMNDKREVLVVKE-KCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
           + I V   + N+K E L+++  +  R+ +G W +P G +N  E L  G  REV EETG+ 
Sbjct: 7   YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGIT 66

Query: 243 TIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
            +  ++    +  L   +   ++F      +  ++ +   E     W+ LE+ +    
Sbjct: 67  MVPGDIAGQVNFELTEKKVIAIVFDG--GYVVADVKL-SYEHIEYSWVSLEKILGMET 121

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 71.3 bits (175), Expect = 8e-15
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 16/151 (10%)

Query: 176 CMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREV 235
               G  + ++ +   V  +++ + V          G W +P G+ +        A +EV
Sbjct: 59  ASETGYQTPKVDIRAVVFQNEKLLFVK-----EKSDGKWALPGGWADVGYTPTEVAAKEV 113

Query: 236 KEETGVDTIFLEMVA-----FRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWM 290
            EETG +    +++A            A     +   C +     + +I   E +  ++ 
Sbjct: 114 FEETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGEKKTSI---ETEEVEFF 170

Query: 291 PLEEFVKQPFYLEDDMSRKVIDICIKAYDDR 321
              E    P       +   I        D 
Sbjct: 171 GENEL---PNLSIARNTEDQIKEMFAYMKDP 198

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 21/159 (13%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
           I   G ++ + + VL+VK        G++  P G++  +E       RE +EETG+    
Sbjct: 2   IVTSGVLVENGK-VLLVK----HKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEP 56

Query: 246 LEMVAFRHVHLVAFEKSDLLFVCMLKP----------LSFEITIYEKEIQAAKWMPLEEF 295
           +                 L+ +  +            L + +     +++  +W+ + E 
Sbjct: 57  IGFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREI 116

Query: 296 VKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKL 334
            +   +      RKV+     A    +      +LA+ L
Sbjct: 117 DRIETF---PNVRKVVS---LALSTLYRLGKISKLAAAL 149

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 182 PSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
              Q+ V G ++ D++ +LV +    +  +  W +P G +   E L    +RE++EETG+
Sbjct: 20  NIMQVRVTGILIEDEKVLLVKQ----KVANRDWSLPGGRVENGETLEEAMIREMREETGL 75

Query: 242 DTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKE-----IQAAKWMPLEEFV 296
           +    +++        +     + F+   + +  EIT+   E     I   + +P+ E  
Sbjct: 76  EVKIKKLLYVCDKPDASPSLLHITFLL--ERIEGEITLPSNEFDHNPIHDVQMVPINELS 133

Query: 297 KQPFY 301
              F 
Sbjct: 134 YYGFS 138

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 64.2 bits (156), Expect = 1e-12
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 20/150 (13%)

Query: 184 HQIGVGGF-VMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD 242
            Q+ V  F       +  V+     R+ + +W+   G     E +   A RE  EE  +D
Sbjct: 6   FQVLVIPFIKTEANYQFGVLH----RTDADVWQFVAGGGEDEEAISETAKRESIEELNLD 61

Query: 243 TIFLEMVAFRHVHLVAFEKSD--------LLFVCMLKPLSFEITIYEKEIQAAKWMPLEE 294
                     H  +  F  S           F   L   S+++T+   E    +W+  E 
Sbjct: 62  VDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVSYES 120

Query: 295 FVKQPFYLEDDMSRKVIDIC---IKAYDDR 321
            ++   +   D ++  +      +K  D +
Sbjct: 121 AIQLLEW---DSNKTALYELNERLKNNDMK 147

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 21/131 (16%)

Query: 180 GSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEET 239
            +    +     ++ + + +LV K+K      G +    G I  +E      VREVKEE 
Sbjct: 14  DNTVFGVRATALIVQNHK-LLVTKDK------GKYYTIGGAIQVNESTEDAVVREVKEEL 66

Query: 240 GVDTIFLEMVAF---------RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWM 290
           GV     ++               H + F      ++  L   +      +++ Q  +W+
Sbjct: 67  GVKAQAGQLAFVVENRFEVDGVSYHNIEF-----HYLVDLLEDAPLTMQEDEKRQPCEWI 121

Query: 291 PLEEFVKQPFY 301
            L++       
Sbjct: 122 DLDKLQNIQLV 132

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 23/134 (17%), Positives = 39/134 (29%), Gaps = 18/134 (13%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT-- 243
                 V   +   +V+     ++ +G + +P G I  +E       REV EE G+    
Sbjct: 19  YAAYIIVSKPENNTMVLV----QAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEI 74

Query: 244 -----IFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ 298
                   E     H    A+      +V             E       W+  EE V+ 
Sbjct: 75  GCYLGEADEYFYSNHRQ-TAYYNPGYFYVA--NTWRQLSEPLE-RTNTLHWVAPEEAVRL 130

Query: 299 PFYLEDDMSRKVID 312
                    R  ++
Sbjct: 131 LKR---GSHRWAVE 141

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 62.2 bits (151), Expect = 6e-12
 Identities = 28/154 (18%), Positives = 47/154 (30%), Gaps = 18/154 (11%)

Query: 158 HHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIP 217
           HH   G  + T            +   +  V   + ND   +L           G W + 
Sbjct: 5   HHHSSGVDLGT----ENLYFQSNAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALS 60

Query: 218 TGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD-----------LLF 266
            G +   E +     RE++EE G   I  ++  +     +  +              L+F
Sbjct: 61  GGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIF 120

Query: 267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
            C     + +I I   E Q   W+  EE      
Sbjct: 121 DC--VSANRDICI-NDEFQDYAWVKPEELALYDL 151

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 61.5 bits (149), Expect = 9e-12
 Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 43/161 (26%)

Query: 182 PSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
             H   V  F++   + VL+         +       G+I  +E      +RE KEE G+
Sbjct: 4   NRH-FTVSVFIVCKDK-VLLHL----HKKAKKMLPLGGHIEVNELPEEACIREAKEEAGL 57

Query: 242 D---------------------------TIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLS 274
           +                              L  V+  H H+      D ++       S
Sbjct: 58  NVTLYNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHI------DFVYYA--TTTS 109

Query: 275 FEITIYEKEIQAAKWMPLEEFVKQPFYLED--DMSRKVIDI 313
           FE +    E +  KW   E+        E+   M+ + +D+
Sbjct: 110 FETSPEIGESKILKWYSKEDLKNAHNIQENILVMATEALDL 150

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 21/149 (14%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
           + VG     + + +L  +   P    G W +P G++  +E L  GA RE  EE       
Sbjct: 41  VIVGCIPEWENKVLLCKRAIAPYR--GKWTLPAGFMENNETLVQGAARETLEEANARVEI 98

Query: 246 LEMVA---FRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL 302
            E+ A     H+  V      +LF   L  L F   I   E    +    +E    P+  
Sbjct: 99  RELYAVYSLPHISQV-----YMLFRAKLLDLDFFPGI---ESLEVRLFGEQEI---PW-- 145

Query: 303 EDDMSRKVIDICIKAY-DDRFNG-FIAHE 329
            +D++ +VI   +K Y ++R +G    H 
Sbjct: 146 -NDIAFRVIHDPLKRYMEERHHGQPAFHL 173

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 28/150 (18%), Positives = 61/150 (40%), Gaps = 17/150 (11%)

Query: 176 CMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREV 235
           C   G  + ++     +  + + +LV      +   G+W +P G+ +  + +    V+EV
Sbjct: 61  CNETGYQTPKLDTRAAIFQEDKILLV------QENDGLWSLPGGWCDVDQSVKDNVVKEV 114

Query: 236 KEETGVDTIFLEMVA----FRHVH-LVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWM 290
           KEE G+D     +VA     ++     A   + +  +C L    F+      E  A+ + 
Sbjct: 115 KEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQPNS---ETVASGFF 171

Query: 291 PLEEFVKQPFYLEDDMSRKVIDICIKAYDD 320
            L++    P       + + + +C++A   
Sbjct: 172 SLDDL---PPLYLGKNTAEQLALCLEASRS 198

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 22/129 (17%)

Query: 187 GVGGFVMNDKREVLVVK------EKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETG 240
            V          +L++K      E  P    G W +P G+++++E     A RE++EET 
Sbjct: 36  TVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETS 95

Query: 241 VDTIFLEMVAF---------RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMP 291
           +  I L                +   A       F  ++ P + E      +       P
Sbjct: 96  LTDIPLIPFGVFDKPGRDPRGWIISRA-------FYAIVPPEALEKRAAGDDAAEIGLFP 148

Query: 292 LEEFVKQPF 300
           + E ++ P 
Sbjct: 149 MTEALELPL 157

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 61.2 bits (148), Expect = 2e-11
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 5/130 (3%)

Query: 179 PGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEE 238
                 +     F    + EVL+V           W +P G +   E+    AVREV EE
Sbjct: 36  GDGYKKRAACLCFRSESEEEVLLVS---SSRHPDRWIVPGGGMEPEEEPSVAAVREVCEE 92

Query: 239 TGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ 298
            GV      +V               ++V ++  +  +        +  +W  +E+ +K 
Sbjct: 93  AGVKGTLGRLVGIFENQERKHRT--YVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKV 150

Query: 299 PFYLEDDMSR 308
             Y +   + 
Sbjct: 151 LQYHKPVQAS 160

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 60.1 bits (145), Expect = 6e-11
 Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 22/153 (14%)

Query: 174 EPCMLPGSPSHQIGVGGFVMN-DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAV 232
              +   +    +    F +N ++ + L++      +    W    G+ +  +D    A+
Sbjct: 34  HDILTRDNTIAHLTSSAFAVNKERNKFLMIH----HNIYNSWAWTGGHSDNEKDQLKVAI 89

Query: 233 REVKEETGVD--TIFLEMVAFRHVHLV-----------AFEKSDLLFVCMLKPLSFEITI 279
           +E+KEETGV   T  L+      V  V           +    +L ++         + +
Sbjct: 90  KELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIEC-SEDETLML 148

Query: 280 YEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVID 312
            E E     W+P  E  K   Y  +     + +
Sbjct: 149 KEDENSGVMWIPFNEISK---YCSEPHMIPIYE 178

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 15/132 (11%)

Query: 188 VGGFV---MNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
            G  +   +  K E L+++   P      W  P G+++  ED +  A+RE KEE  +   
Sbjct: 6   AGLVIYRKLAGKIEFLLLQASYPP---HHWTPPKGHVDPGEDEWQAAIRETKEEANITKE 62

Query: 245 FLEMVAFRHVHLVAFEKSDL----LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
            L +    H  L    K        ++  L     ++ +   E Q  KW  LE+ +K   
Sbjct: 63  QLTIHEDCHETLFYEAKGKPKSVKYWLAKLNN-PDDVQL-SHEHQNWKWCELEDAIKIAD 120

Query: 301 YLEDDMSRKVID 312
           Y E      ++ 
Sbjct: 121 YAEM---GSLLR 129

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 58.6 bits (142), Expect = 9e-11
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 194 NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH 253
            + + V++       +    +  P G++   E      +RE+ EETG+     ++V  ++
Sbjct: 18  LETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKN 77

Query: 254 VHLVAFEKSDL-LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDD 305
             L    +  +  +        F  T+   E     W+  ++         D 
Sbjct: 78  WPLDTGGRYIVICYKA----TEFSGTLQSSEEGEVSWVQKDQIPNLNL-AYDM 125

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 34/192 (17%), Positives = 58/192 (30%), Gaps = 26/192 (13%)

Query: 129 LKGKKGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGV 188
            +GK+G +L  +           Q+   Y      Y  L  +                  
Sbjct: 149 FEGKEGDYLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDA 208

Query: 189 GGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEM 248
              V+     VL+V+ +      G+  +P G+I ++E L  G +RE+KEET +      +
Sbjct: 209 ---VVVQAGHVLMVRRQAK-PGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVL 264

Query: 249 VAF---------------RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLE 293
                                   A       +   L            + Q A WM L 
Sbjct: 265 RGSIVDSHVFDAPGRSLRGRTITHA-------YFIQLPGGELPAVKGGDDAQKAWWMSLA 317

Query: 294 EFVKQPFYLEDD 305
           +   Q   + +D
Sbjct: 318 DLYAQEEQIYED 329

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 22/118 (18%)

Query: 181 SPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETG 240
                      +      ++        S  G + +P G  N+ E      +RE++EETG
Sbjct: 12  PSDLARRATAIIEMPDGVLVT------ASRGGRYNLPGGKANRGELRSQALIREIREETG 65

Query: 241 VDTIFLEMVAF----RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEE 294
           +    +  +       + H V        ++C+ +    +      EI+    +   +
Sbjct: 66  LRINSMLYLFDHITPFNAHKV--------YLCIAQG---QPKPQN-EIERIALVSSPD 111

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 20/129 (15%), Positives = 43/129 (33%), Gaps = 17/129 (13%)

Query: 184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT 243
            ++     V + + + ++V++K           P G++   E   + A+REV EETG+  
Sbjct: 9   VELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRL 68

Query: 244 IFLEMVAF-------RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFV 296
             +            R    +       L+       +F  T+         W+P+    
Sbjct: 69  SGVTFCGTCEWFDDDRQHRKLGL-----LYRA----SNFTGTLKASAEGQLSWLPITALT 119

Query: 297 KQPFYLEDD 305
           ++       
Sbjct: 120 RENSA-ASL 127

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 182 PSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
            + ++     V+  +R VL+  +K     +G W    G + + E +  GA RE++EE+G+
Sbjct: 22  GASRLYTLVLVLQPQR-VLLGMKKRGFG-AGRWNGFGGKVQEGETIEDGARRELQEESGL 79

Query: 242 DTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301
               L  V       V   +   + V      S + T  E +     W  L++   +   
Sbjct: 80  TVDALHKVGQIVFEFVGEPELMDVHVFCTD--SIQGTPVESDEMRPCWFQLDQIPFKDM- 136

Query: 302 LEDD 305
             DD
Sbjct: 137 WPDD 140

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 27/158 (17%), Positives = 42/158 (26%), Gaps = 27/158 (17%)

Query: 170 WIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFS 229
           W       +   P+           D  EV +V     R     W  P G + ++E    
Sbjct: 11  WRWKAGSDIANDPAIASSKSAQEQLDSIEVCIVH----RPKYDDWSWPKGKLEQNETHRH 66

Query: 230 GAVREVKEETGVDTIFLEMVA----------------------FRHVHLVAFEKSDLLFV 267
            AVRE+ EETG        +                        +H      +       
Sbjct: 67  AAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDA 126

Query: 268 CMLKPLSFEITIYE-KEIQAAKWMPLEEFVKQPFYLED 304
             L      +   +  EI    W+ + E  K   +  D
Sbjct: 127 EHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTD 164

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 23/114 (20%)

Query: 190 GFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMV 249
            +   + + +++++ K P        +P G++   E +   A RE++EETG++    +++
Sbjct: 18  LWDGENFKGIVLIERKYP---PVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLM 74

Query: 250 AF---------RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEE 294
                       HV  V +          +     E      + +  K   LEE
Sbjct: 75  GVYSDPERDPRAHVVSVVW----------IGDAQGEPKAGS-DAKKVKVYRLEE 117

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 30/154 (19%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 156 SYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWK 215
           ++HH      +        P  +P   S  I V   +++    VL+ +    +S +G+W+
Sbjct: 2   AHHHHHHMGTLEAQ--TQGPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWE 59

Query: 216 IPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF---------RHVHLVAFEKSDLLF 266
            P G + + E   +  +RE++EE GV      +             H+ +        L+
Sbjct: 60  FPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYETFHLLM-------PLY 112

Query: 267 VCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
            C      ++     +E Q  KW+ + +  K P 
Sbjct: 113 FCSH----YKGVAQGREGQNLKWIFINDLDKYPM 142

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 14/113 (12%)

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE 247
           V   ++ D  +VL+++    +   G W  P G +   E +     RE  EETG+     E
Sbjct: 6   VTNCIVVDHDQVLLLQ----KPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPE 61

Query: 248 MVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQA------AKWMPLEE 294
           +       +V F++  ++   ML   +F+ T +E E+         +W   +E
Sbjct: 62  LKGI--FSMVIFDEGKIVSEWML--FTFKATEHEGEMLKQSPEGKLEWKKKDE 110

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 20/131 (15%)

Query: 186 IGVGGFVM-NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
           + +   +   D + VL+++    R     W+  TG + + E     A+REVKEE  +D +
Sbjct: 10  VSILVVIYAQDTKRVLMLQR---RDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVV 66

Query: 245 FLEMVAFRHVHLVAFEKSDLL--------------FVCMLKPLSFEITIYEKEIQAAKWM 290
             ++        V FE    L              + C+  P   +I     E  A KW+
Sbjct: 67  AEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIVF--TEHLAYKWL 124

Query: 291 PLEEFVKQPFY 301
                      
Sbjct: 125 DAPAAAALTKS 135

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 18/137 (13%)

Query: 171 IPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSG 230
           +  +         H I V    +    ++LV +     S +G W+ P G I   E     
Sbjct: 7   VESKQKKSKIRKGHWIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEA 66

Query: 231 AVREVKEETGVDTIFLEMVAF-------RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKE 283
             RE+ EE G++    E+            + ++        +  +     ++     K 
Sbjct: 67  LARELNEELGIEAEVGELKLACTHSYGDVGILIL-------FYEILY----WKGEPRAKH 115

Query: 284 IQAAKWMPLEEFVKQPF 300
               +W+  EE   +  
Sbjct: 116 HMMLEWIHPEELKHRNI 132

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 18/120 (15%)

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE 247
             G + N+  E+ + +       +   + P G I   E      VRE++EE G+      
Sbjct: 7   AVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFS 66

Query: 248 MVAF-------RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
           +          RH+ L         ++       +E   + KE Q  +WM L       F
Sbjct: 67  LFEKLEYEFPDRHITLW-------FWLVER----WEGEPWGKEGQPGEWMSLVGLNADDF 115

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 52.3 bits (125), Expect = 8e-08
 Identities = 32/202 (15%), Positives = 60/202 (29%), Gaps = 33/202 (16%)

Query: 121 RASLSNWKLKGK----KGVWLKILSKQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPC 176
             + +  + + K          + S    L        F         V    ++     
Sbjct: 138 YKNFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIEYKR 197

Query: 177 MLPGSPSHQIGVGGF-VMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREV 235
           +   +P     V    ++     +L+V+ K       +W +P G++   E +    +RE+
Sbjct: 198 LWLKAPFKPNFVTVDALVIVNDHILMVQRKAH-PGKDLWALPGGFLECDETIAQAIIREL 256

Query: 236 KEETGVDTIFLEMVAFRHVHLVAFEKSD------------LLFVCMLKPLSFEITIYEKE 283
            EET ++ +  E +A        F+  D            L        L         E
Sbjct: 257 FEETNIN-LTHEQLAIAKRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLP--------E 307

Query: 284 IQA------AKWMPLEEFVKQP 299
           I A       KW+ L   +K  
Sbjct: 308 INAADDAKDVKWISLGSNIKNI 329

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 15/115 (13%)

Query: 191 FVMNDKREVLV-----VKEKCPRSCSGMWKIPT-GYINKSEDLFSGAVREVKEETGVDTI 244
           F+ N + ++ +      K   P        +   G +   E       RE +EE  V+  
Sbjct: 40  FLRNSQGQLWIPRRSPSKSLFP----NALDVSVGGAVQSGETYEEAFRREAREELNVE-- 93

Query: 245 FLEMVAFRHVHLVAFEKSDLLFVCMLKPLSF--EITIYEKEIQAAKWMPLEEFVK 297
            ++ +++R +   +  ++ L     +  L           +I   +W+  E  + 
Sbjct: 94  -IDALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFNPNDISGGEWLTPEHLLA 147

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 8/120 (6%)

Query: 184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT 243
             +     +++    VL+ +    +S +G+W+ P G +   E   +  VRE+ EE GVDT
Sbjct: 7   ILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDT 66

Query: 244 IFLEMVAFRHVHLVAFEKSD---LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
                     +   +        L+ +   +      T   +E Q   W+  E   + P 
Sbjct: 67  ---RASCLAPLAFASHSYDTFHLLMPLYACRSWRGRATA--REGQTLAWVRAERLREYPM 121

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 194 NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH 253
            D+ +VL+++ K        W +P G++N++E      +RE KEETGV    +       
Sbjct: 53  ADQLKVLLIQRKGH-PFRNSWALPGGFVNRNESTEDSVLRETKEETGVV---ISQENIEQ 108

Query: 254 VHLVAFEKSD----LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRK 309
           +H  +    D    ++ V  L  +  E  I   + +   W    E   Q   L  +    
Sbjct: 109 LHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFN-LERHGQHITLSHEDVEI 167

Query: 310 VIDICIKAYDDRFNGFIAH 328
            +D+   A   +      H
Sbjct: 168 TLDLKTAASLGKDTLAFDH 186

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 15/116 (12%)

Query: 191 FVMNDKREVLV-----VKEKCPRSCSGMWKIPT-GYINKSEDLFSGAVREVKEETGVDTI 244
            V +   ++LV      K+  P    GM      G +   E L   A RE +EE G+  +
Sbjct: 43  VVHDGMGKILVQRRTETKDFLP----GMLDATAGGVVQADEQLLESARREAEEELGIAGV 98

Query: 245 FLEMVA-FRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP 299
                  F            L       P + +    E E+    W+  EE   + 
Sbjct: 99  PFAEHGQFYFEDKNCRVWGALFSCVSHGPFALQ----EDEVSEVCWLTPEEITARC 150

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 19/120 (15%)

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE 247
           V   +  D + +L+ +       +G+W+   G +   E      VRE++EE G++    E
Sbjct: 12  VAAIIERDGK-ILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGE 70

Query: 248 MVAF-------RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
            VA        R +HL A+               F  T+   E QA  W   EE ++ P 
Sbjct: 71  YVASHQREVSGRIIHLHAWH-------VPD----FHGTLQAHEHQALVWCSPEEALQYPL 119

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 21/122 (17%)

Query: 188 VGGFVMNDKREVLVVK--EKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
           V   +   ++  L V+  +      S  ++ P G + + E L     RE+ EE       
Sbjct: 9   VAAVIRLGEK-YLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEV 67

Query: 246 LEMVAF-------RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ 298
            E +           + +         F+C             KE  AA+W+   E    
Sbjct: 68  GEKLLTVHHTYPDFEITMH-------AFLCHP----VGQRYVLKEHIAAQWLSTREMAIL 116

Query: 299 PF 300
            +
Sbjct: 117 DW 118

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 45.8 bits (108), Expect = 9e-06
 Identities = 28/226 (12%), Positives = 57/226 (25%), Gaps = 30/226 (13%)

Query: 85  PIFVPEFLDP---FDDEYDGVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILS 141
                        FD   D V+++      +  +   A+   +     +G          
Sbjct: 35  KALAQRLKAHGRVFDVTRDAVLLSAS--LRTPQSRTRAVADVVDRLADEGVVPAPR---- 88

Query: 142 KQADLVPIAIQEGFSYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLV 201
                      E +  + +     ++   +        G  ++ + + G+V       L 
Sbjct: 89  ----------GELYRVNQSWGEPTLML--LDRAVVPTFGVRAYGVHLNGYVGAGADLHLW 136

Query: 202 VKE--KCPRSCSGMW-KIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA 258
           +           G    +  G       L    ++E  EE  +                 
Sbjct: 137 IGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYC 196

Query: 259 FE-----KSDLLFVCMLK-PLSFEITIYEKEIQAAKWMPLEEFVKQ 298
            E     K D LF+  L  P  F     + E+      P  + V+ 
Sbjct: 197 MESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEA 242

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 194 NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFR- 252
             +  +L++K        G W +  G++ K E +   A R + E TG++ +++E V    
Sbjct: 25  EGEISLLLLKRNFE-PAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFG 83

Query: 253 --------HVHLVAFE 260
                    V  +A+ 
Sbjct: 84  AIDRDPGERVVSIAYY 99

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 19/117 (16%)

Query: 191 FVMNDKREVLV-----VKEKCPRSCSGMWKIPT-GYINKSEDLFSGAVREVKEETGVDTI 244
           ++ N K ++LV      K+  P    G+W     G+    E      +R  + E GV+  
Sbjct: 38  WLFNAKGQLLVTRRALSKKAWP----GVWTNSVCGHPQLGESNEDAVIRRCRYELGVEIT 93

Query: 245 FLEMVAFRHVHLVAFEKS------DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEF 295
             E +     +               +F          + I + E+   +W  L + 
Sbjct: 94  PPESIYPDFRYRATDPSGIVENEVCPVFAARTTS---ALQINDDEVMDYQWCDLADV 147

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL 246
            VG  + N + +V+  +    R     W+ P G IN  E       RE+ EE G+    +
Sbjct: 10  NVGIVICNRQGQVMWAR----RFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDV 65

Query: 247 EMVA 250
            ++A
Sbjct: 66  RILA 69

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 43.1 bits (101), Expect = 5e-05
 Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 6/125 (4%)

Query: 194 NDKREVLVVKEKCPRSCSGMWKIPTGYINKS--EDLFSGAVREVKEETGVDTIFLEMVAF 251
           + + +VL+V+        G+W +P G+I+++  E L    +R++ E+T V   ++E +  
Sbjct: 34  DQQLKVLLVQRSNH-PFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCT 92

Query: 252 RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVI 311
              +        +              I    +   KW PL + ++ P   +     ++I
Sbjct: 93  VGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVLQMPLAFDH---LQLI 149

Query: 312 DICIK 316
           +   +
Sbjct: 150 EQARE 154

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 41.4 bits (98), Expect = 9e-05
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 187 GVGGFVMNDKREVLVVKEKCPRS-CSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
            VG  +MN+ +++        R      W++P G I++ ED  + A+RE++EETGV + 
Sbjct: 16  NVGICLMNNDKKIFAAS----RLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSA 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
3fxt_A	113	Nucleoside diphosphate-linked moiety X motif 6; nu	99.9
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.89
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.87
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.85
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.85
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.85
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.84
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.83
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.83
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.83
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.83
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.83
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.83
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.82
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.82
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.82
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.82
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.82
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.82
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.81
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.81
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.81
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.81
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.81
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.81
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.8
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.8
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.8
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.8
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.8
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.8
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.8
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.79
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.79
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.78
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.78
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.78
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.78
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.78
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.78
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.78
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.77
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.77
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.77
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.77
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.76
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.76
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.76
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.76
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.76
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.75
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.75
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.75
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.75
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.74
3f13_A	163	Putative nudix hydrolase family member; structural	99.73
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.72
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.72
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.72
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.72
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.7
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.69
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.69
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.68
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.68
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.66
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.65
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.64
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.57
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.56
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.52
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.51
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.45
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.35
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.3
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.29
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.84
3bho_A	208	Cleavage and polyadenylation specificity factor su	98.78

>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}

Probab=99.90  E-value=1.6e-24  Score=176.01  Aligned_cols=92  Identities=29%  Similarity=0.506  Sum_probs=82.3

Q ss_pred             CCCccccccCCccCCCCcEEeCCCC----CCCChHHHHHHHHHHhHHhHhcCceeEEEEccccccCchHHHHhcccceec
Q 019077           84 APIFVPEFLDPFDDEYDGVIINPEN----LPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHH  159 (346)
Q Consensus        84 ~~~~~~~~~~~~~d~~~g~~v~~~~----~~~~~~~f~~~l~~sl~~w~~~~~r~vw~~l~~~~~~l~~~a~~~gf~~H~  159 (346)
                      +..++..+|+|+.|+||||+|+..+    .+.|+++|...|++||.+|+.+|+++||++||+.++++++.|+++||.|||
T Consensus        17 ~~~~~~~~l~g~~DrygGV~Vd~~~l~~~~~~d~~~F~~~L~~SL~~Wr~~gk~~IWlklpi~~s~lIp~a~~~GF~fHH   96 (113)
T 3fxt_A           17 NLYFQSMDLQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHH   96 (113)
T ss_dssp             ----CCCCCCCEECTTSCEEEEHHHHTTTSCBCHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGGGHHHHHHTTCEEEE
T ss_pred             ccccccccccCCccCcCCEEEeCCccCCcCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEcCHHHhhhHHHHHHcCceeec
Confidence            4468899999999999999999754    346999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEeeccccCCC
Q 019077          160 AEPGYVMLTYWIPVEP  175 (346)
Q Consensus       160 ~~~~~~~l~~wl~~~~  175 (346)
                      |+++|+||++||++.+
T Consensus        97 Ae~dylmL~~WLpe~p  112 (113)
T 3fxt_A           97 AESDSSTLTLWLREGP  112 (113)
T ss_dssp             EEBTEEEEEEECCC--
T ss_pred             CCCCeEEEEEecCcCC
Confidence            9999999999999875

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.89  E-value=3.3e-23  Score=189.56  Aligned_cols=159  Identities=17%  Similarity=0.290  Sum_probs=123.8

Q ss_pred             CCCCCCccceEEEEEEE---eCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEe
Q 019077          177 MLPGSPSHQIGVGGFVM---NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH  253 (346)
Q Consensus       177 ~lp~~~~~~v~V~avVi---n~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~  253 (346)
                      ..+.++.+.++|+++|+   +++++|||++|... ...|.|.+|||++|+||++.+||+||++||||+++...+.++...
T Consensus         5 ~~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~-~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~   83 (226)
T 2fb1_A            5 YYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFE-PAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFG   83 (226)
T ss_dssp             TTTTSCCEEEEEEEEEEEEETTEEEEEEEECSSS-SSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEEC
T ss_pred             ccccCCCCeEEEEEEEEEEeCCCCEEEEEECcCC-CCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeC
Confidence            35667788899999998   45689999999853 357899999999999999999999999999999998888887654


Q ss_pred             eeccc-cc-eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCC--CCCccccc
Q 019077          254 VHLVA-FE-KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDR--FNGFIAHE  329 (346)
Q Consensus       254 ~~~~~-~~-~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~--~~g~~~~~  329 (346)
                      ..... .+ ...+.|++.+.  ......+++|+.+++|++++++.++.+++     ..+++.++++++++  |.++.+.+
T Consensus        84 ~~~r~~~~~~v~~~y~a~~~--~~~~~~~~~e~~~~~W~~~~el~~l~~dh-----~~il~~a~~rlr~~~~y~~i~~~l  156 (226)
T 2fb1_A           84 AIDRDPGERVVSIAYYALIN--INEYDRELVQKHNAYWVNINELPALIFDH-----PEMVDKAREMMKQKASVEPIGFNL  156 (226)
T ss_dssp             CTTSSSSSCEEEEEEEEECC--TTSSCHHHHHHTTEEEEETTSCCCBSTTH-----HHHHHHHHHHHHHHHHHSGGGGGG
T ss_pred             CCCcCCCceEEEEEEEEEec--CcccccCCccccceEEEEHHHhhhccCCH-----HHHHHHHHHHHHhhcccCchHHHh
Confidence            32221 12 23445666543  22333345788999999999999888764     56777777777765  88999999


Q ss_pred             ccccc-cccccccee
Q 019077          330 LASKL-DGKLSCLYH  343 (346)
Q Consensus       330 l~~~f-~~~~~~~y~  343 (346)
                      +|.+| +.+++.+|+
T Consensus       157 lp~~ftl~~l~~~ye  171 (226)
T 2fb1_A          157 LPKLFTLSQLQSLYE  171 (226)
T ss_dssp             SCSEEEHHHHHHHHH
T ss_pred             CCccccHHHHHHHHH
Confidence            99999 888888886

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.87  E-value=3.3e-22  Score=184.58  Aligned_cols=158  Identities=16%  Similarity=0.329  Sum_probs=118.8

Q ss_pred             CCCccceEEEEEEE---eCCCeEEEEeecCCCCCCCceeeeeEEecC--CCCHHHHHHHHHHHHhCCceeeeEEEEEEee
Q 019077          180 GSPSHQIGVGGFVM---NDKREVLVVKEKCPRSCSGMWKIPTGYINK--SEDLFSGAVREVKEETGVDTIFLEMVAFRHV  254 (346)
Q Consensus       180 ~~~~~~v~V~avVi---n~~~~VLLvrr~~~~~~~g~W~lPGG~ve~--GEs~~eAA~REv~EETGl~v~~~~ll~~~~~  254 (346)
                      .++.+.++|+++|+   +++++|||++|... ...|.|.+|||+||+  ||++.+||+||++||||+++...+.++....
T Consensus        17 ~~~~p~v~v~~vi~~~~~~~~~vLLv~R~~~-~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~   95 (240)
T 3gz5_A           17 AFKAQLLTVDAVLFTYHDQQLKVLLVQRSNH-PFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGN   95 (240)
T ss_dssp             ----CEEEEEEEEEEEETTEEEEEEEECCSS-SSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEEE
T ss_pred             ccCCCccEEEEEEEEEeCCCcEEEEEECcCC-CCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeCC
Confidence            44566688888888   34579999999843 257899999999999  9999999999999999999988888876544


Q ss_pred             ecc-ccc-eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCC--CCCcccccc
Q 019077          255 HLV-AFE-KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDR--FNGFIAHEL  330 (346)
Q Consensus       255 ~~~-~~~-~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~--~~g~~~~~l  330 (346)
                      ... ..+ ...+.|++.+.  ......+.+|+.+++|++++++...++...   .+.+++.++++++++  |.++.+.++
T Consensus        96 ~~r~~~~~~~~~~y~a~~~--~~~~~~~~~e~~~~~W~~~~el~~~~l~~d---h~~il~~a~~rlr~kl~y~~i~~~ll  170 (240)
T 3gz5_A           96 NSRDARGWSVTVCYTALMS--YQACQIQIASVSDVKWWPLADVLQMPLAFD---HLQLIEQARERLTQKALYSLVPGFAL  170 (240)
T ss_dssp             SSSSTTSCEEEEEEEEECC--HHHHHHHHTTCTTEEEEEHHHHTTSCCSTT---HHHHHHHHHHHHHHHHHHCSGGGGGS
T ss_pred             CccCCCceEEEEEEEEEec--ccccCCCCCcccceEEecHHHcccCCcchh---HHHHHHHHHHHHHHhcccCcHHHHhC
Confidence            322 212 34455555543  233333467889999999999986544432   267888888888876  899999999


Q ss_pred             cccc-cccccccee
Q 019077          331 ASKL-DGKLSCLYH  343 (346)
Q Consensus       331 ~~~f-~~~~~~~y~  343 (346)
                      |.+| +.+++.+|+
T Consensus       171 p~~Ftl~~l~~~ye  184 (240)
T 3gz5_A          171 SEPFTLPELQHVHE  184 (240)
T ss_dssp             CSSBCHHHHHHHHH
T ss_pred             CCCccHHHHHHHHH
Confidence            9999 889888886

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.85  E-value=8.1e-21  Score=159.62  Aligned_cols=122  Identities=29%  Similarity=0.396  Sum_probs=90.1

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccc----
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE----  260 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~----  260 (346)
                      .+++++||++ +++|||++|.     .|.|.||||++|+||++.+||+||++||||+++....+++.........+    
T Consensus         4 ~~aag~vv~~-~~~vLL~~r~-----~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~   77 (134)
T 3i7u_A            4 EFSAGGVLFK-DGEVLLIKTP-----SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIF   77 (134)
T ss_dssp             EEEEEEEEEE-TTEEEEEECT-----TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEE
T ss_pred             EEEEEEEEEE-CCEEEEEEeC-----CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEE
Confidence            3678888886 4899999875     37899999999999999999999999999999998888775433322222    


Q ss_pred             eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHh
Q 019077          261 KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAY  318 (346)
Q Consensus       261 ~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~  318 (346)
                      ...++|.|...  ++++.+ ++|+.+++|++++++.++...+   ..+.+++.+++.+
T Consensus        78 ~~~~~f~~~~~--~~~~~~-~~E~~~~~W~~~~e~~~~l~~~---~~r~il~~a~~l~  129 (134)
T 3i7u_A           78 KTVKYYLMKYK--EGEPRP-SWEVKDAKFFPIKEAKKLLKYK---GDKEIFEKALKLK  129 (134)
T ss_dssp             EEEEEEEEEEE--EECCCC-CTTSSEEEEEEHHHHHHHBCSH---HHHHHHHHHHHHH
T ss_pred             EEEEEEEEEEc--CCcCcC-ChhheEEEEEEHHHHhhhcCCh---HHHHHHHHHHHHH
Confidence            23345666543  344444 4689999999999999875543   2356677666544

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.85  E-value=2.4e-20  Score=158.75  Aligned_cols=132  Identities=22%  Similarity=0.337  Sum_probs=102.0

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCC-CCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccccee
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCP-RSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKS  262 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~-~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~  262 (346)
                      ..++|+++|++.+++|||++|... +.++|.|.||||++|+||++.+||+||++||||+.+....+++............
T Consensus         7 ~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~   86 (153)
T 3grn_A            7 YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKKVI   86 (153)
T ss_dssp             EEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCEEE
T ss_pred             eEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCceEE
Confidence            457888899988899999999843 5678999999999999999999999999999999999888887665443333333


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCC-CCCccHHHHHHHHHHHHHhcCC
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP-FYLEDDMSRKVIDICIKAYDDR  321 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~-~~~~~~~~~~ii~~~l~~~~~~  321 (346)
                      .++|.+..  ..+.+.. .+|..+++|++++++.+++ +++   .++.+++.+.......
T Consensus        87 ~~~~~~~~--~~~~~~~-~~e~~~~~W~~~~el~~~~~~~~---~~~~~l~~l~~~~~~e  140 (153)
T 3grn_A           87 AIVFDGGY--VVADVKL-SYEHIEYSWVSLEKILGMETLPA---YFRDFFERFDRENKKP  140 (153)
T ss_dssp             EEEEEEEE--CCCCCCC-CTTEEEEEEECHHHHTTCSSSCH---HHHHHHHHHHHHHTC-
T ss_pred             EEEEEEEe--cCCcEec-CCCcceEEEEEHHHhhhcccchH---HHHHHHHHHhccccCC
Confidence            44455443  3344433 4788999999999999998 654   5677888877665544

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.85  E-value=1.6e-20  Score=167.69  Aligned_cols=141  Identities=35%  Similarity=0.618  Sum_probs=101.0

Q ss_pred             CCCCCCCccceEEEEEEEeC-CCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEee
Q 019077          176 CMLPGSPSHQIGVGGFVMND-KREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHV  254 (346)
Q Consensus       176 ~~lp~~~~~~v~V~avVin~-~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~  254 (346)
                      +..+.++++.++|+++|+++ +++|||++++..  ..|.|.+|||++|+||++.+||+||++||||+++...+++++...
T Consensus        17 ~~~~~~~~~~v~v~~~v~~~~~~~vLL~~r~~~--~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~   94 (199)
T 3h95_A           17 NLYFQSMSHQVGVAGAVFDESTRKILVVQDRNK--LKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQ   94 (199)
T ss_dssp             ---------CCEEEEEEEETTTTEEEEEEESSS--STTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEC
T ss_pred             ccccccCcccceEEEEEEeCCCCEEEEEEEcCC--CCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEee
Confidence            44566778889999999985 489999998743  479999999999999999999999999999999998888876433


Q ss_pred             eccc--cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcC
Q 019077          255 HLVA--FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDD  320 (346)
Q Consensus       255 ~~~~--~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~  320 (346)
                      ....  .....++|+|.+......+.++++|+.+++|++++++.+++..  ..+.+.++..++...+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~--~~~~~~~~~~~~~~~~~  160 (199)
T 3h95_A           95 HTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKTENT--TPITSRVARLLLYGYRE  160 (199)
T ss_dssp             C---------CEEEEEEEEESCCCCCCCTTTEEEEEEEEHHHHHHCSSB--CHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCceeEEEEEEEEEcCCCcccCCCccceeeeEEEeHHHHhhhhhc--ChHHHHHHHHHHhhhhc
Confidence            3222  2345677888776555666677889999999999999998643  33566666666654443

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.84  E-value=3.6e-20  Score=158.51  Aligned_cols=136  Identities=22%  Similarity=0.364  Sum_probs=93.7

Q ss_pred             CCCCCCCCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEE--EEE
Q 019077          174 EPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEM--VAF  251 (346)
Q Consensus       174 ~~~~lp~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~l--l~~  251 (346)
                      .+.+++..+.....+.++|++.+++|||++|...+.++|.|.||||++|+||++.+||+||++||||+.+....+  ++.
T Consensus        18 gP~~~~~~~~~~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~   97 (158)
T 3hhj_A           18 GPGSMPIKSSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTF   97 (158)
T ss_dssp             ---------CEEEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEE
T ss_pred             CCccCCCCCceEEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEE
Confidence            344555555666677788888889999999985566889999999999999999999999999999999887654  333


Q ss_pred             EeeeccccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077          252 RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       252 ~~~~~~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~  316 (346)
                      .............+|.|..  ...  .++..|..+++|++++++.+++++...   +++++.+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~--~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~---~~il~~~~~  155 (158)
T 3hhj_A           98 ASHGYETFHLLMPLYFCSH--YKG--VAQGREGQNLKWIFINDLDKYPMPEAD---KPLVQVLKN  155 (158)
T ss_dssp             EEEECSSCEEEEEEEEESC--CBS--CCCCTTSCEEEEEEGGGGGGSCCCTTT---HHHHHHHHH
T ss_pred             EeeccCCcEEEEEEEEEEE--CCC--ccCCccccceEEEcHHHHhhCCCCcch---HHHHHHHHH
Confidence            3222222222333444432  222  345678899999999999999987754   556665554

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.83  E-value=7.1e-20  Score=153.55  Aligned_cols=123  Identities=20%  Similarity=0.197  Sum_probs=90.0

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCC--CCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccccee
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRS--CSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKS  262 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~--~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~  262 (346)
                      ...|+++|.+ +++|||++|...+.  ++|.|.||||++|+||++.+||+||++||||+++....+++............
T Consensus         6 ~~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~   84 (140)
T 3gwy_A            6 IEVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDFEIT   84 (140)
T ss_dssp             EEEEEEEEEE-TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSCCEE
T ss_pred             EEEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCceEE
Confidence            3456666666 78999999986554  78999999999999999999999999999999999888887655444434444


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI  315 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l  315 (346)
                      ..+|.+...  .+.  ++..|..+++|++++++.++++++.+   +++++.+.
T Consensus        85 ~~~f~~~~~--~~~--~~~~E~~~~~W~~~~el~~~~~~~~~---~~il~~~~  130 (140)
T 3gwy_A           85 MHAFLCHPV--GQR--YVLKEHIAAQWLSTREMAILDWAEAD---KPIVRKIS  130 (140)
T ss_dssp             EEEEEEEEC--CSC--CCCCSSCEEEEECHHHHTTSCBCGGG---HHHHHHHH
T ss_pred             EEEEEEEec--CCc--ccccccceeEeccHHHHhhCCCCccc---HHHHHHHH
Confidence            556666553  333  34568899999999999999988744   55665554

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.83  E-value=7.1e-20  Score=154.62  Aligned_cols=130  Identities=20%  Similarity=0.198  Sum_probs=98.0

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL  264 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~  264 (346)
                      .+.+.++|++.+++|||++|...+.++|.|.||||++|+||++.+||+||++||||+.+....+++..............
T Consensus        21 ~~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~  100 (153)
T 3ees_A           21 WIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGILIL  100 (153)
T ss_dssp             EEEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEEEE
T ss_pred             eEEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEEEE
Confidence            34566677777799999999865567899999999999999999999999999999999888877764443333333334


Q ss_pred             EEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCC
Q 019077          265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDR  321 (346)
Q Consensus       265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~  321 (346)
                      +|.+...  ..  .++..|..+++|++++++.++++++   ..+.+++.+.+.++..
T Consensus       101 ~~~~~~~--~~--~~~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~~~~~  150 (153)
T 3ees_A          101 FYEILYW--KG--EPRAKHHMMLEWIHPEELKHRNIPE---ANRKILHKIYKALGLE  150 (153)
T ss_dssp             EEEECEE--ES--CCCCSSSSEEEEECGGGGGGSCCCH---HHHTTHHHHHHHTTCC
T ss_pred             EEEEEEC--CC--CcCCCccceEEEecHHHhhhCCCCc---chHHHHHHHHHhhccc
Confidence            4444432  22  2456788999999999999998875   4566777777665543

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.83  E-value=8.2e-20  Score=155.75  Aligned_cols=132  Identities=17%  Similarity=0.255  Sum_probs=99.5

Q ss_pred             ccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccccee
Q 019077          183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKS  262 (346)
Q Consensus       183 ~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~  262 (346)
                      .....|++++++++++|||++|.+.. +.|.|.+|||++|+||++.+||+||++||||+++....+++.....   ....
T Consensus        18 ~~~~~v~~~i~~~~~~vLl~~r~~~~-~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~---~~~~   93 (156)
T 3gg6_A           18 NVCYVVLAVFLSEQDEVLLIQEAKRE-CRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEERG---PSWV   93 (156)
T ss_dssp             TCEEEEEEECBCTTSEEEEEECCCTT-STTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEESS---TTEE
T ss_pred             ceEEEEEEEEEeCCCEEEEEEecCCC-CCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcCC---CCEE
Confidence            34456777888888999999998543 6899999999999999999999999999999999988888865432   2345


Q ss_pred             EEEEEEEEecCCcc-ccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCC
Q 019077          263 DLLFVCMLKPLSFE-ITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDR  321 (346)
Q Consensus       263 ~~~fv~~l~~~~~~-i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~  321 (346)
                      .++|++........ ...+++|+.+++|++++++.++....   -+..++..+...+.++
T Consensus        94 ~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~~~~~  150 (156)
T 3gg6_A           94 RFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAH---DILHLVELAAQYRQQA  150 (156)
T ss_dssp             EEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCT---HHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccch---hHHHHHHHHHHHhhcC
Confidence            56777765322111 12345789999999999998866544   4566777766666554

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.83  E-value=6e-20  Score=153.95  Aligned_cols=129  Identities=23%  Similarity=0.310  Sum_probs=93.1

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEE--EEEeeeccccce
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMV--AFRHVHLVAFEK  261 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll--~~~~~~~~~~~~  261 (346)
                      ....+++++++.+++|||++|...+.++|.|.||||++++||++.+||+||++||||+.+....+.  ............
T Consensus         7 ~~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   86 (144)
T 3r03_A            7 ILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHL   86 (144)
T ss_dssp             EEEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEE
T ss_pred             eeEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeEE
Confidence            345566777888899999999855567899999999999999999999999999999998876433  322222222223


Q ss_pred             eEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhc
Q 019077          262 SDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYD  319 (346)
Q Consensus       262 ~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~  319 (346)
                      ...+|.+..  ..+  .++..|..+++|++++++.++++++.+   +++++.+.+...
T Consensus        87 ~~~~~~~~~--~~~--~~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~~~~~  137 (144)
T 3r03_A           87 LMPLYACRS--WRG--RATAREGQTLAWVRAERLREYPMPPAD---LPLIPILQDWLE  137 (144)
T ss_dssp             EEEEEEECC--CBS--CCCCCSSCEEEEECGGGGGGSCCCTTT---TTHHHHHHHHC-
T ss_pred             EEEEEEEEe--cCC--ccCCCCcceEEEEeHHHhccCCCCcch---HHHHHHHhCccc
Confidence            334444433  223  334678899999999999999988754   556666665443

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.83  E-value=1.3e-19  Score=148.42  Aligned_cols=121  Identities=27%  Similarity=0.383  Sum_probs=93.3

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL  265 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~  265 (346)
                      ++|++++++++++|||++|..     |.|.+|||++++||++.+||+||++||||+.+....+++..............+
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~-----g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   77 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM-----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVH   77 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT-----SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEE
T ss_pred             eEEEEEEEcCCCEEEEEEECC-----CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEEE
Confidence            678899999889999999873     789999999999999999999999999999998888887654433333334456


Q ss_pred             EEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHH
Q 019077          266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKA  317 (346)
Q Consensus       266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~  317 (346)
                      |.+....  +. ..++.|+.+++|++++++.++....   ..+++++.+++.
T Consensus        78 ~~~~~~~--~~-~~~~~e~~~~~w~~~~el~~~~~~~---~~~~~l~~~~~~  123 (126)
T 1vcd_A           78 WFLMRGE--GA-PRLEEGMTGAGWFSPEEARALLAFP---EDLGLLEVALER  123 (126)
T ss_dssp             EEEEEEE--SC-CCCCTTCCEEEEECHHHHHHHBCSH---HHHHHHHHHHHH
T ss_pred             EEEEEcC--CC-CCCCcceeeeEEcCHHHHHHhhcCh---hHHHHHHHHHHh
Confidence            6665432  22 3346789999999999999876544   446677766654

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.83  E-value=1.6e-19  Score=150.50  Aligned_cols=125  Identities=19%  Similarity=0.253  Sum_probs=91.3

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL  265 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~  265 (346)
                      +.+.++|++.+++|||++|...+.++|.|.||||++++||++.+||+||++||||+.+....+++...+..........+
T Consensus         9 ~~~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   88 (140)
T 2rrk_A            9 IEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHA   88 (140)
T ss_dssp             EEEEEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEEEEE
Confidence            33444555777899999997555578999999999999999999999999999999998888777554333322233344


Q ss_pred             EEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHH
Q 019077          266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKA  317 (346)
Q Consensus       266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~  317 (346)
                      |.+...  ..  .++..|+.+++|++++++.++++++.   .+++++.+++.
T Consensus        89 ~~~~~~--~~--~~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~  133 (140)
T 2rrk_A           89 WHVPDF--HG--TLQAHEHQALVWCSPEEALQYPLAPA---DIPLLEAFMAL  133 (140)
T ss_dssp             EEESEE--EE--CCCCSSCSCEEEECHHHHTTSCCCTT---HHHHHHHHHHH
T ss_pred             EEEEee--CC--CcCCCccceeEEeCHHHHhhCCCChh---HHHHHHHHHHH
Confidence            555432  22  23456788999999999999988764   35566665554

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.82  E-value=3.1e-19  Score=152.03  Aligned_cols=134  Identities=19%  Similarity=0.301  Sum_probs=97.0

Q ss_pred             CccceEEEEEEEeCCCeEEEEeecC---CCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc
Q 019077          182 PSHQIGVGGFVMNDKREVLVVKEKC---PRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA  258 (346)
Q Consensus       182 ~~~~v~V~avVin~~~~VLLvrr~~---~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~  258 (346)
                      +....+++++|++++++|||++|.+   .+.++|.|.+|||++|+||++.+||+||++||||+.+....+++........
T Consensus        10 ~~~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~   89 (159)
T 1sjy_A           10 PVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPD   89 (159)
T ss_dssp             CCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTT
T ss_pred             CeEEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCC
Confidence            3445778888888889999999985   4456799999999999999999999999999999999888888765433221


Q ss_pred             -cceeEEEEEEEEecCCcc-ccC-CccccceEEEEchhhhhcCCCCCccH--HHHHHHHHHHHH
Q 019077          259 -FEKSDLLFVCMLKPLSFE-ITI-YEKEIQAAKWMPLEEFVKQPFYLEDD--MSRKVIDICIKA  317 (346)
Q Consensus       259 -~~~~~~~fv~~l~~~~~~-i~~-~~~Ei~~~~Wv~~eel~~l~~~~~~~--~~~~ii~~~l~~  317 (346)
                       ......+|.+...  .+. +.+ +++|+.+++|++++++.++.......  ....++..+++.
T Consensus        90 ~~~~~~~~f~~~~~--~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~~~~~~~~  151 (159)
T 1sjy_A           90 GVLILRHVWLAEPE--PGQTLAPAFTDEIAEASFVSREDFAQLYAAGQIRMYQTKLFYADALRE  151 (159)
T ss_dssp             SCEEEEEEEEEEEC--SSCCCCCCCCSSEEEEEEECHHHHHHHHHTTCBSCTHHHHHHHHHHHH
T ss_pred             CceEEEEEEEEEcc--CCCccccCCCCceeEEEEecHHHHHHhhhcccchhhhhHHHHHHHHhc
Confidence             2234455656553  333 555 67889999999999998875543322  233445555543

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.82  E-value=8.5e-20  Score=171.42  Aligned_cols=159  Identities=18%  Similarity=0.238  Sum_probs=116.6

Q ss_pred             CCCCCCCccceEEEEEEEe--C---CCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceee--eEE
Q 019077          176 CMLPGSPSHQIGVGGFVMN--D---KREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF--LEM  248 (346)
Q Consensus       176 ~~lp~~~~~~v~V~avVin--~---~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~--~~l  248 (346)
                      +.++.++.+.++|+++|+.  +   +++|||++|.+.+ ..|.|.+|||+||+||++.+||+||++||||+++..  ...
T Consensus        30 ~~~~~~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p-~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~  108 (273)
T 2fml_A           30 QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHP-FRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQ  108 (273)
T ss_dssp             SCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSS-STTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEE
T ss_pred             hhcccCCCCceEEEEEEEEEcCCCCCcEEEEEEccCCC-CCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEE
Confidence            3445677888899988876  2   3589999998543 578999999999999999999999999999977654  344


Q ss_pred             EEEEeeecc-cc-ceeEEEEEEEEecCCccccCCccccceEEEEchhhhh-------------------------cCCCC
Q 019077          249 VAFRHVHLV-AF-EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFV-------------------------KQPFY  301 (346)
Q Consensus       249 l~~~~~~~~-~~-~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~-------------------------~l~~~  301 (346)
                      ++.+..... .. ....++|++.+..  .. ...++|..+++|++++++.                         .+.+.
T Consensus       109 l~~~~~~~r~~~~~~~~~~y~a~~~~--~~-~~~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~~~~~Lafd  185 (273)
T 2fml_A          109 LHSFSRPDRDPRGWVVTVSYLAFIGE--EP-LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFD  185 (273)
T ss_dssp             EEEECCTTSSTTSSEEEEEEEEECCC--CC-CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTT
T ss_pred             EEEEcCCCCCCCceEEEEEEEEEeCC--CC-CCCCcceeeEEEEEhhHhhhhhccccchhhhccccccccccCCCccccc
Confidence            443322111 11 1345566665532  22 3456789999999999742                         33343


Q ss_pred             CccHHHHHHHHHHHHHhcCC--CCCcccccccccc-cccccccee
Q 019077          302 LEDDMSRKVIDICIKAYDDR--FNGFIAHELASKL-DGKLSCLYH  343 (346)
Q Consensus       302 ~~~~~~~~ii~~~l~~~~~~--~~g~~~~~l~~~f-~~~~~~~y~  343 (346)
                      +     ..|+..++++++++  |.++.+.++|++| +.+++-+|+
T Consensus       186 H-----~~Il~~al~rlr~kl~y~~i~~~llp~~FTl~~l~~~ye  225 (273)
T 2fml_A          186 H-----SEIIIKAFNRVVDKMEHEPQVLQVLGKDFTITEARKVFA  225 (273)
T ss_dssp             H-----HHHHHHHHHHHHHHTTTCCGGGGGGCSCBCHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHHHHHhcCCcHHHHhCCccccHHHHHHHHH
Confidence            3     67888888888776  9999999999999 889988885

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.82  E-value=1.8e-19  Score=169.06  Aligned_cols=145  Identities=19%  Similarity=0.278  Sum_probs=110.2

Q ss_pred             ccccCCC-CCCCCCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeE
Q 019077          169 YWIPVEP-CMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE  247 (346)
Q Consensus       169 ~wl~~~~-~~lp~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~  247 (346)
                      +|...|+ |....||...++|.++|. .+++|||++|.+.+  .|.|.+|||++|+||++++||+||++||||+++...+
T Consensus       123 ~~~~~C~~C~~~~yp~~~~~viv~v~-~~~~vLL~rr~~~~--~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~  199 (269)
T 1vk6_A          123 EWAMLCSHCRERYYPQIAPCIIVAIR-RDDSILLAQHTRHR--NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLR  199 (269)
T ss_dssp             SSCEEESSSSCEECCCCEEEEEEEEE-ETTEEEEEEETTTC--SSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEE
T ss_pred             ceeeeCCCCCCEecCCCCcEEEEEEE-eCCEEEEEEecCCC--CCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEE
Confidence            4444443 666677777777765555 46899999998543  6899999999999999999999999999999999888


Q ss_pred             EEEEEeeeccccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCCC
Q 019077          248 MVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRF  322 (346)
Q Consensus       248 ll~~~~~~~~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~~  322 (346)
                      +++..... .. ....++|.+.+.  ++++.++++|+.+++|++++++..++...  .+.+.+++.+++.+++.|
T Consensus       200 ~~~~~~~~-~~-~~~~~~f~a~~~--~~~~~~~~~E~~~~~W~~~~el~~l~~~~--si~~~li~~~l~~~r~~~  268 (269)
T 1vk6_A          200 YVTSQPWP-FP-QSLMTAFMAEYD--SGDIVIDPKELLEANWYRYDDLPLLPPPG--TVARRLIEDTVAMCRAEY  268 (269)
T ss_dssp             EEEEEEEE-TT-EEEEEEEEEEEE--ECCCCCCTTTEEEEEEEETTSCCSCCCTT--SHHHHHHHHHHHHHHHCC
T ss_pred             EEEEEecC-CC-CEEEEEEEEEEC--CCCcCCCCcceEEEEEEEHHHhhhcccCc--HHHHHHHHHHHHHHHhhc
Confidence            88765332 21 224455666553  34566777899999999999999887654  377888999988887654

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.82  E-value=1.6e-19  Score=162.33  Aligned_cols=132  Identities=20%  Similarity=0.281  Sum_probs=102.8

Q ss_pred             CCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec---
Q 019077          180 GSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL---  256 (346)
Q Consensus       180 ~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~---  256 (346)
                      .++++.++|+++|++ +++|||++|.    ..|.|.+|||++|+||++.+||+||++||||+++....+++......   
T Consensus        63 ~~~~~~~~v~~vv~~-~~~vLLv~r~----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~  137 (205)
T 3q1p_A           63 GYQTPKVDIRAVVFQ-NEKLLFVKEK----SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQP  137 (205)
T ss_dssp             SSCCCEEEEEEEEEE-TTEEEEEEC-------CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHSC
T ss_pred             CCCCCcceEEEEEEE-CCEEEEEEEc----CCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccccCC
Confidence            456677889999997 6899999987    36899999999999999999999999999999999888888765432   


Q ss_pred             --cccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCCC
Q 019077          257 --VAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRF  322 (346)
Q Consensus       257 --~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~~  322 (346)
                        .......++|.|...  .+.+.. +.|+.+++|++++++.++.+.+.   .++.+..+++.++++.
T Consensus       138 ~~~~~~~~~~~~~~~~~--~~~~~~-~~E~~~~~w~~~~el~~l~~~~~---~~~~i~~~~~~~~~~~  199 (205)
T 3q1p_A          138 SPSATHVYKIFIGCEII--GGEKKT-SIETEEVEFFGENELPNLSIARN---TEDQIKEMFAYMKDPQ  199 (205)
T ss_dssp             CCCSSCEEEEEEEEEEE--EECCCC-CTTSCCEEEECTTSCCCBCTTTC---CHHHHHHHHHHHHCTT
T ss_pred             CCCCceEEEEEEEEEec--CCccCC-CCcceEEEEEeHHHhhhcCCCcc---HHHHHHHHHHHHhCCC
Confidence              123345667777664  234444 37899999999999999887664   3667888888777753

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.82  E-value=9.4e-20  Score=156.36  Aligned_cols=132  Identities=18%  Similarity=0.310  Sum_probs=93.0

Q ss_pred             CCCCCCCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEee
Q 019077          175 PCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHV  254 (346)
Q Consensus       175 ~~~lp~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~  254 (346)
                      +..++..+.++++|+++|++ +++|||++|.+.. +.+.|.||||++|+||++.+||+||++||||+++....+++....
T Consensus        19 p~~m~~~~~~~~~v~~vi~~-~~~vLL~~r~~~~-~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~   96 (157)
T 4dyw_A           19 PGSMQHTEQPRVGCGAAIVR-DGRILLIKRKRAP-EAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDH   96 (157)
T ss_dssp             -------CCCEEEEEEEEEE-TTEEEEEEECSSS-STTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEE
T ss_pred             CCCCCCCCCceeEEEEEEEE-CCEEEEEEecCCC-CCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEe
Confidence            44555566778899999998 6899999998554 789999999999999999999999999999999998888876554


Q ss_pred             eccccc--eeEEEEEEEEecCCccc-cCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHH
Q 019077          255 HLVAFE--KSDLLFVCMLKPLSFEI-TIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDIC  314 (346)
Q Consensus       255 ~~~~~~--~~~~~fv~~l~~~~~~i-~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~  314 (346)
                      ......  ....+|.+...  .... ..+++|+.+++|++++++.+ .+.+   ..+++++.+
T Consensus        97 ~~~~~~~~~~~~~f~~~~~--~~~~~~~~~~E~~~~~W~~~~el~~-~l~~---~~~~~l~~l  153 (157)
T 4dyw_A           97 IDAANGEHWVAPVYLAHAF--SGEPRVVEPDRHEALGWFALDDLPQ-PLTH---ATRIALEQV  153 (157)
T ss_dssp             EETTTTEEEEEEEEEESEE--ESCCCCSCTTTEEEEEEEETTSCCS-SBCH---HHHHHHHHH
T ss_pred             eccCCCcEEEEEEEEEEEc--CCCcccCCCCcEeEEEEECHHHccc-ccCH---HHHHHHHHH
Confidence            442222  23345555443  2222 23457899999999999987 3332   334455443

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.81  E-value=2.7e-19  Score=154.10  Aligned_cols=128  Identities=17%  Similarity=0.259  Sum_probs=85.6

Q ss_pred             CccceEEEEEEEeCCCeEEEEeec-CCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEe-----ee
Q 019077          182 PSHQIGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH-----VH  255 (346)
Q Consensus       182 ~~~~v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~-----~~  255 (346)
                      +.....+.++|++.+++|||++|. ..+.++|.|.+|||++|+||++.+||+||++||||+++....++.+..     .+
T Consensus        24 ~~~~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  103 (165)
T 3oga_A           24 AMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIK  103 (165)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEE
T ss_pred             CcceEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeE
Confidence            444455666677778999999988 444577999999999999999999999999999999998777664321     11


Q ss_pred             ccccc----eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHH
Q 019077          256 LVAFE----KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDI  313 (346)
Q Consensus       256 ~~~~~----~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~  313 (346)
                      ....+    ...+++++.+......+.. ++|+.+++|++++++.++++.+.   .+.+++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~  161 (165)
T 3oga_A          104 TYADGRQEEIYMIYLIFDCVSANRDICI-NDEFQDYAWVKPEELALYDLNVA---TRHTLAL  161 (165)
T ss_dssp             EC--CCEEEEEEEEEEEEEEESCCCCCC-CTTEEEEEEECGGGGGGSCBCHH---HHHHHHH
T ss_pred             ecCCCCceeEEEEEEEEEeeccCCCccC-CchheeeEEccHHHHhhCCCCHH---HHHHHHH
Confidence            11111    1122333333333444433 47889999999999999988763   3444443

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.81  E-value=2e-19  Score=154.90  Aligned_cols=129  Identities=14%  Similarity=0.136  Sum_probs=96.2

Q ss_pred             CccceEEEEEEEeCC-CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccc
Q 019077          182 PSHQIGVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE  260 (346)
Q Consensus       182 ~~~~v~V~avVin~~-~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~  260 (346)
                      ....+++.++|++++ ++|||++|.+ ..+.|.|.+|||++|+||++.+||+||++||||+++...++++.........+
T Consensus         7 ~~~~~~v~~vi~~~~~~~vLL~~r~~-~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~   85 (161)
T 3exq_A            7 QPVELVTMVMVTDPETQRVLVEDKVN-VPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQ   85 (161)
T ss_dssp             CCEEEEEEEEEBCTTTCCEEEECCCC-CTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCS
T ss_pred             CCceEEEEEEEEeCCCCEEEEEEccC-CCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCC
Confidence            345577778888776 7999999884 34677899999999999999999999999999999998888877655442223


Q ss_pred             eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077          261 KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       261 ~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~  316 (346)
                      ...+.+++.+....+.  ++..|..+++|++++++.++++.+   ..+++++.+++
T Consensus        86 ~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~  136 (161)
T 3exq_A           86 HRKLGLLYRASNFTGT--LKASAEGQLSWLPITALTRENSAA---SLPEFLQVFTG  136 (161)
T ss_dssp             SEEEEEEEEECCEESC--CCGGGTTTEEEECGGGCCTTTBCT---THHHHHHHHTT
T ss_pred             eEEEEEEEEEeccCCc--cCCCccceEEEeeHHHhhhCccCh---HHHHHHHHHhh
Confidence            3334444443322233  446778899999999999988776   34667777665

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.81  E-value=5.8e-20  Score=155.61  Aligned_cols=116  Identities=16%  Similarity=0.015  Sum_probs=80.6

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD  263 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~  263 (346)
                      +..+|++++++.+++|||+++.+.+.+.+.|.+|||++|+||++++||+||++||||+++.....++.....+.......
T Consensus         4 ~~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~   83 (145)
T 2w4e_A            4 GPRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVF   83 (145)
T ss_dssp             CCEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEE
T ss_pred             eCCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceE
Confidence            34678888999889999988765444566999999999999999999999999999999887776654322222222344


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                      .+|++.... ......+++|+.+++|++++++.++..
T Consensus        84 ~~f~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~~  119 (145)
T 2w4e_A           84 YPLLALGVT-LGAAQLEDTETIERVVLPLAEVYRMLE  119 (145)
T ss_dssp             EEEEEEEEE-EC--------CEEEEEEEHHHHHHHHH
T ss_pred             EEEEEEecc-cCCCCCCCCCeEEEEEEeHHHHHHHHH
Confidence            555555221 224445678999999999999987643

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.81  E-value=2.8e-19  Score=152.87  Aligned_cols=126  Identities=21%  Similarity=0.302  Sum_probs=88.0

Q ss_pred             EEEEEEE---------eCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeee--
Q 019077          187 GVGGFVM---------NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVH--  255 (346)
Q Consensus       187 ~V~avVi---------n~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~--  255 (346)
                      ++|++|+         |++.++||++|..   .++.|.+|||++|+||++.+||+||++||||+++....++......  
T Consensus         5 a~G~iifr~~~~~~~~n~~~e~LL~~r~~---~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   81 (155)
T 3u53_A            5 ACGLIIFRRCLIPKVDNNAIEFLLLQASD---GIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELN   81 (155)
T ss_dssp             EEEEEEEEECCCSSSSSCSEEEEEEEESS---SSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEE
T ss_pred             EeEEEEEccccccceeCCCcEEEEEEecC---CCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeee
Confidence            4666766         4568999999973   3478999999999999999999999999999999877766433221  


Q ss_pred             --ccccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhc
Q 019077          256 --LVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYD  319 (346)
Q Consensus       256 --~~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~  319 (346)
                        .........+|++........+. .++|+.+++|++++|+.++...+   -.+.+++.+.+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~ea~~~~~~~---~~~~~L~~a~~~L~  143 (155)
T 3u53_A           82 YVARNKPKTVIYWLAEVKDYDVEIR-LSHEHQAYRWLGLEEACQLAQFK---EMKAALQEGHQFLC  143 (155)
T ss_dssp             EEETTEEEEEEEEEEEESCTTCCCC-CCTTEEEEEEECHHHHHHHHCSH---HHHHHHHHHHHHHH
T ss_pred             cCCCcceeEEEEEEEEEeccCCccC-CCcceeEEEEeEHHHHHHHcCCH---HHHHHHHHHHHHHh
Confidence              11112344556665543333333 35689999999999998865433   33556666555443

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.81  E-value=4.8e-19  Score=147.36  Aligned_cols=126  Identities=21%  Similarity=0.249  Sum_probs=89.8

Q ss_pred             ceEEEEEEEeC---CCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEE----EEEeeecc
Q 019077          185 QIGVGGFVMND---KREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMV----AFRHVHLV  257 (346)
Q Consensus       185 ~v~V~avVin~---~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll----~~~~~~~~  257 (346)
                      ..+|+++++++   +++|||++|+.   ++|.|.+|||++|+||++.+||+||++||||+.+....++    +.......
T Consensus         3 ~~~~~~vi~~~~~~~~~vLl~~r~~---~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   79 (138)
T 1ktg_A            3 VKAAGLVIYRKLAGKIEFLLLQASY---PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAK   79 (138)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESS---TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEET
T ss_pred             eEEEEEEEEEecCCCcEEEEEEccC---CCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeC
Confidence            35678888875   47899999872   4579999999999999999999999999999965544443    22222222


Q ss_pred             ccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHh
Q 019077          258 AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAY  318 (346)
Q Consensus       258 ~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~  318 (346)
                      .......+|++.....  ....+++|+.+++|++++++.++.+.+   ..+.+++.+.+.+
T Consensus        80 ~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~l  135 (138)
T 1ktg_A           80 GKPKSVKYWLAKLNNP--DDVQLSHEHQNWKWCELEDAIKIADYA---EMGSLLRKFSAFL  135 (138)
T ss_dssp             TEEEEEEEEEEEECSC--CCCCCCTTEEEEEEECHHHHHHHHCCH---HHHHHHHHHHHHH
T ss_pred             CCceEEEEEEEEecCC--cccCCCchhcEeEeccHHHHHHhhccc---hHHHHHHHHHHHh
Confidence            2234455666765421  234457889999999999999986654   3456667666655

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.80  E-value=7.4e-19  Score=146.96  Aligned_cols=124  Identities=18%  Similarity=0.225  Sum_probs=92.1

Q ss_pred             CCccceEEEEEEEe--CCCe--EEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec
Q 019077          181 SPSHQIGVGGFVMN--DKRE--VLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL  256 (346)
Q Consensus       181 ~~~~~v~V~avVin--~~~~--VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~  256 (346)
                      +..+.++|+++|++  ++++  |||++|.+.   ++.|.+|||++|+||++.+||+||++||||+++....+++......
T Consensus         5 y~~p~~~v~~vi~~~~~~~~~~vLl~~r~~~---~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   81 (139)
T 2yyh_A            5 VKTPLLATDVIIRLWDGENFKGIVLIERKYP---PVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPE   81 (139)
T ss_dssp             CCCCEEEEEEEEEEEETTEEEEEEEEEECSS---SCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTT
T ss_pred             ccCCeEEEEEEEEEEcCCCcEEEEEEEecCC---CCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCCC
Confidence            45667888888887  6787  999999843   2349999999999999999999999999999998888877654322


Q ss_pred             cc--cceeEEEEEEEEecCCccccCCccccceEEEEchhhhh--cCCCCCccHHHHHHHHHHHH
Q 019077          257 VA--FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFV--KQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       257 ~~--~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~--~l~~~~~~~~~~~ii~~~l~  316 (346)
                      ..  ......+|.|...   +.+. .++|+.+++|++++++.  .+.+++     +++++.+++
T Consensus        82 ~~~~~~~~~~~f~~~~~---~~~~-~~~e~~~~~W~~~~el~~~~l~~~~-----~~~l~~~l~  136 (139)
T 2yyh_A           82 RDPRAHVVSVVWIGDAQ---GEPK-AGSDAKKVKVYRLEEIPLDKLVFDH-----KKIILDFLK  136 (139)
T ss_dssp             SCTTSCEEEEEEEEEEE---SCCC-CCTTEEEEEEECTTSCCGGGBCTTH-----HHHHHHHHH
T ss_pred             cCCCceEEEEEEEEecC---CccC-CCCCcceEEEEEHHHCCHhhcCCCH-----HHHHHHHHh
Confidence            21  2234456666652   2332 46788999999999999  776653     556666553

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.80  E-value=1.2e-18  Score=147.29  Aligned_cols=128  Identities=14%  Similarity=0.189  Sum_probs=90.4

Q ss_pred             eEEEEEEE---eCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee--EEEEEEeeec--cc
Q 019077          186 IGVGGFVM---NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL--EMVAFRHVHL--VA  258 (346)
Q Consensus       186 v~V~avVi---n~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~--~ll~~~~~~~--~~  258 (346)
                      .+|.++++   +++++|||++|..    .|.|.+|||++|+||++.+||+||++||||+++...  .+..+.....  +.
T Consensus         6 ~~v~vvi~~~~~~~~~vLl~~r~~----~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   81 (149)
T 3son_A            6 FQVLVIPFIKTEANYQFGVLHRTD----ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFS   81 (149)
T ss_dssp             CEEEEEEEEECSSSEEEEEEEESS----SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTC
T ss_pred             eEEEEEEEEecCCCeEEEEEEEcC----CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeec
Confidence            45655565   4668999999984    389999999999999999999999999999998764  2222221111  11


Q ss_pred             ----cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCC
Q 019077          259 ----FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDR  321 (346)
Q Consensus       259 ----~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~  321 (346)
                          .....++|.+......+.+.+ ++|+.+++|++++++.++...+   ..+.++..+.+.++.+
T Consensus        82 ~~~~~~~~~~~f~~~~~~~~~~~~~-~~E~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~~l~~~  144 (149)
T 3son_A           82 FNKPYVVPEYCFAIDLTSCSYQVTL-SLEHSELRWVSYESAIQLLEWD---SNKTALYELNERLKNN  144 (149)
T ss_dssp             SSSCSEEEEEEEEEECTTTGGGCCC-CTTEEEEEEECHHHHHHHCCCH---HHHHHHHHHHHHHHTT
T ss_pred             cCCceEeEEEEEEEEcCCCCCcccC-CCceeeEEEeCHHHHHHHhcCH---HHHHHHHHHHHHHhhc
Confidence                112334555554322345555 5889999999999999987665   4567777777777654

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.80  E-value=5.2e-19  Score=153.17  Aligned_cols=124  Identities=23%  Similarity=0.322  Sum_probs=91.5

Q ss_pred             ccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccccee
Q 019077          183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKS  262 (346)
Q Consensus       183 ~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~  262 (346)
                      ...++|+++|++ +++|||++|.+   ..|.|.+|||++|+||++.+||+||++||||+++....+++............
T Consensus        21 ~~~~~v~~ii~~-~~~vLL~~r~~---~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~   96 (171)
T 3id9_A           21 IMQVRVTGILIE-DEKVLLVKQKV---ANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPSLL   96 (171)
T ss_dssp             -CEEEEEEEEEE-TTEEEEEECSS---TTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSCEE
T ss_pred             ceEEEEEEEEEE-CCEEEEEEEEC---CCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCCCcEE
Confidence            345677777776 58999999984   26899999999999999999999999999999998888887765544444445


Q ss_pred             EEEEEEEEecCCcccc-----CCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077          263 DLLFVCMLKPLSFEIT-----IYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI  315 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~-----~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l  315 (346)
                      .++|.+...  .+.+.     .+.+|+.+++|++++++.++++.+..   +++++..+
T Consensus        97 ~~~~~~~~~--~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~---~~~l~~~~  149 (171)
T 3id9_A           97 HITFLLERI--EGEITLPSNEFDHNPIHDVQMVPINELSYYGFSETF---INLISGGL  149 (171)
T ss_dssp             EEEEEEEEC---------------CCCCCEEEEETGGGGGGTCCTTC---SHHHHHGG
T ss_pred             EEEEEEEEc--CCcccCCccCCCcCeeeeEEEEeHHHHhhCCCCHHH---HHHHHHhh
Confidence            556666543  23322     35688999999999999999887753   44555554

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.80  E-value=1e-18  Score=148.94  Aligned_cols=125  Identities=17%  Similarity=0.171  Sum_probs=90.8

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCcee--eeEEEEEEeeecccc--
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI--FLEMVAFRHVHLVAF--  259 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~--~~~ll~~~~~~~~~~--  259 (346)
                      +.++|+++|++++++|||++|.... ..|.|.+|||++|+||++.+||+||++||||+.+.  ...+++.........  
T Consensus        17 ~~~~v~~vi~~~~~~vLl~~r~~~~-~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   95 (160)
T 1rya_A           17 PLVSLDFIVENSRGEFLLGKRTNRP-AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFS   95 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSSS-STTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTT
T ss_pred             cEEEEEEEEEcCCCEEEEEeccCCC-CCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEccccc
Confidence            3478888999888999999998543 57999999999999999999999999999999963  556666543322111  


Q ss_pred             ------ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHH
Q 019077          260 ------EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDI  313 (346)
Q Consensus       260 ------~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~  313 (346)
                            .....+|.+..  ....+..+++|+.+++|++++++.++++.+.  ..+.+++.
T Consensus        96 ~~~~~~~~~~~~f~~~~--~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~--~~~~~l~~  151 (160)
T 1rya_A           96 GTDFTTHYVVLGFRFRV--SEEELLLPDEQHDDYRWLTSDALLASDNVHA--NSRAYFLA  151 (160)
T ss_dssp             BSSSCEEEEEEEEEEEC--CGGGCCCCSSSEEEEEEECHHHHHHCTTBCH--HHHGGGCH
T ss_pred             CCCcCcEEEEEEEEEEc--CccccccCCCccceEEEecHHHHhhccccCH--HHHHHHHH
Confidence                  12333444443  3345555678899999999999999876542  34444443

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.80  E-value=9.4e-19  Score=152.76  Aligned_cols=128  Identities=20%  Similarity=0.235  Sum_probs=94.2

Q ss_pred             eEEEEEEEeCCCeEEEEeecC-CCCCCCceee-eeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077          186 IGVGGFVMNDKREVLVVKEKC-PRSCSGMWKI-PTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD  263 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~-~~~~~g~W~l-PGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~  263 (346)
                      .++++++++.+++|||++|.. ....+|.|.| |||++|+||++.+||+||++||||+++.....++.............
T Consensus        38 ~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  117 (180)
T 2fkb_A           38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWG  117 (180)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEEE
Confidence            567788888889999998873 3335789999 99999999999999999999999998877777765443332222333


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEchhhhhcC--CCCCccHHHHHHHHHHHHHhc
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ--PFYLEDDMSRKVIDICIKAYD  319 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l--~~~~~~~~~~~ii~~~l~~~~  319 (346)
                      .+|.|.   ....+.++++|+.+++|++++++.++  ++.+   ....++..++....
T Consensus       118 ~~f~~~---~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~---~~~~~l~~~~~~~~  169 (180)
T 2fkb_A          118 ALFSCV---SHGPFALQEDEVSEVCWLTPEEITARCDEFTP---DSLKALALWMKRNA  169 (180)
T ss_dssp             EEEEEE---CCCCCCCCTTTEEEEEEECHHHHHTTGGGBCH---HHHHHHHHHHHHC-
T ss_pred             EEEEEe---cCCCcCCChhHhheEEEecHHHHHHHHHHhCC---cHHHHHHHHHHhhc
Confidence            455554   24455667789999999999999998  4443   34566666665443

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.80  E-value=8.6e-19  Score=150.16  Aligned_cols=123  Identities=20%  Similarity=0.205  Sum_probs=88.7

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEe-----------
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH-----------  253 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~-----------  253 (346)
                      ..+|+++|++ +++|||++|+    ..|.|.+|||++|+||++.+||+||++||||+++....+++...           
T Consensus         6 ~~~v~~vi~~-~~~vLL~~r~----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   80 (159)
T 3f6a_A            6 HFTVSVFIVC-KDKVLLHLHK----KAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKL   80 (159)
T ss_dssp             CEEEEEEEEE-TTEEEEEECS----SSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEE
T ss_pred             eEEEEEEEEE-CCEEEEEEcC----CCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccccccccccccccccccc
Confidence            4667788887 6899999998    35899999999999999999999999999999998776663210           


Q ss_pred             --------eecccc--ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077          254 --------VHLVAF--EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       254 --------~~~~~~--~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~  316 (346)
                              .+....  ....++|.|..  ..+.+..+++|..+++|++++++.++++.+.  -++.+.+.+..
T Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~--~~~~l~~~~~~  149 (159)
T 3f6a_A           81 LINPIHTILGDVSPNHSHIDFVYYATT--TSFETSPEIGESKILKWYSKEDLKNAHNIQE--NILVMATEALD  149 (159)
T ss_dssp             ECCCSEEEEECSSSSSCEEEEEEEEEC--SCSCCCCCTTSCCCEEEECSSSSTTCSSSCH--HHHHHHHHHHH
T ss_pred             ccCccccccccCCCCceEEEEEEEEEe--CCCCcCCCCCcccceEEeeHHHHhhCcCCCh--hHHHHHHHHHH
Confidence                    000001  12334555544  3455666778999999999999999986553  33444444443

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.80  E-value=1e-18  Score=147.93  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=88.2

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccc--ee
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE--KS  262 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~--~~  262 (346)
                      .++|.+++ +++++|||++|.+.+. ++.|.+|||++|+||++.+||+||++||||+++....+++..........  ..
T Consensus         8 ~~~v~~ii-~~~~~vLl~~r~~~~~-~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (153)
T 2b0v_A            8 NVTVAAVI-EQDDKYLLVEEIPRGT-AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYL   85 (153)
T ss_dssp             EEEEEEEC-EETTEEEEEEECSSSS-CCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEE
T ss_pred             CEEEEEEE-eeCCEEEEEEEcCCCC-CCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEEE
Confidence            35555555 4568999999985544 78999999999999999999999999999999998888876533222112  22


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI  315 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l  315 (346)
                      ..+|.+..... .....++.|+.+++|++++++.++........++.++..++
T Consensus        86 ~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~l~~~~  137 (153)
T 2b0v_A           86 RFTFSGQVVSF-DPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYH  137 (153)
T ss_dssp             EEEEEEEEEEE-CTTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHH
T ss_pred             EEEEEEEeCCC-CCCCCCCCCeeeEEEecHHHHhhhhcccCcHHHHHHHHHHH
Confidence            33455554321 11234567899999999999999621111224555555554

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.79  E-value=2.3e-19  Score=158.37  Aligned_cols=138  Identities=17%  Similarity=0.250  Sum_probs=95.8

Q ss_pred             CCccc-eEEEEEEEe---C----CCeEEEEeecC------CCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee
Q 019077          181 SPSHQ-IGVGGFVMN---D----KREVLVVKEKC------PRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL  246 (346)
Q Consensus       181 ~~~~~-v~V~avVin---~----~~~VLLvrr~~------~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~  246 (346)
                      ++++. ++|+++|+.   +    +++|||++|..      .....|.|.+|||++|+||++.+||+||++||||+++...
T Consensus        22 ~~~p~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~  101 (187)
T 3i9x_A           22 FRTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPL  101 (187)
T ss_dssp             -CCCSEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCC
T ss_pred             cCCcccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcce
Confidence            44455 677777765   2    46899999942      2347899999999999999999999999999999999988


Q ss_pred             EEEEEEeeecccc-c-eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCC
Q 019077          247 EMVAFRHVHLVAF-E-KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDR  321 (346)
Q Consensus       247 ~ll~~~~~~~~~~-~-~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~  321 (346)
                      .+++......... + ....+|++.+.........+.+|+.+++|++++++.++++...   .+.+++.+++++++.
T Consensus       102 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~---~~~il~~a~~~l~~~  175 (187)
T 3i9x_A          102 IPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLFPMTEALELPLAFD---HLDMLKKAFSAITEE  175 (187)
T ss_dssp             EEEEEECCTTSSTTSSEEEEEEEEECCHHHHHHHHHSTTTTTEEEEEHHHHTTSCBSTT---HHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCCccCCCCCEEEEEEEEEEcCcccCCcCCCCceeEEEEEeHHHcccCCCCcc---HHHHHHHHHHHHHhh
Confidence            8888754332211 1 2334444444321111223467889999999999998766653   355666666666543

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.79  E-value=9.7e-19  Score=157.23  Aligned_cols=130  Identities=22%  Similarity=0.436  Sum_probs=100.6

Q ss_pred             CCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc--
Q 019077          180 GSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV--  257 (346)
Q Consensus       180 ~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~--  257 (346)
                      .++++.++|.++|+++ ++|||++|.     .|.|.||||++|+||++.+||+||++||||+++....+++.......  
T Consensus        65 ~y~~~~~~v~~vv~~~-~~vLLvrr~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~  138 (206)
T 3o8s_A           65 GYQTPKLDTRAAIFQE-DKILLVQEN-----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNP  138 (206)
T ss_dssp             ---CCEEEEEEEEEET-TEEEEEECT-----TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC
T ss_pred             CCCCCCccEEEEEEEC-CEEEEEEec-----CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccccCC
Confidence            4566778898899985 899999987     58999999999999999999999999999999998888887653221  


Q ss_pred             ---ccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCC
Q 019077          258 ---AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDR  321 (346)
Q Consensus       258 ---~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~  321 (346)
                         .+....++|.|...  .+.+.. +.|+.+++|++++++.++++...   ++++++.+++.++++
T Consensus       139 ~~~~~~~~~~~~~~~~~--~~~~~~-~~E~~~~~w~~~~el~~l~~~~~---~~~~l~~~~~~~~~~  199 (206)
T 3o8s_A          139 AKSAHRVTKVFILCRLL--GGEFQP-NSETVASGFFSLDDLPPLYLGKN---TAEQLALCLEASRSE  199 (206)
T ss_dssp             -----CEEEEEEEEEEE--EECCCC-CSSCSEEEEECTTSCCCBCTTTC---CHHHHHHHHHHHHCS
T ss_pred             CCCCceEEEEEEEEEec--CCeecC-CCCceEEEEEeHHHhhhccCCCc---hHHHHHHHHHHHHCC
Confidence               22345566777654  234433 37899999999999999987663   467788888877765

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.78  E-value=2.6e-18  Score=145.70  Aligned_cols=127  Identities=20%  Similarity=0.318  Sum_probs=89.7

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc-ccceeE
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV-AFEKSD  263 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~-~~~~~~  263 (346)
                      .++|++++. ++++|||++|..  .+.+.|.+|||++|+||++.+||+||++||||+++....+++....... ......
T Consensus         5 ~~~v~~ii~-~~~~vLl~~r~~--~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T 3shd_A            5 HVTVACVVH-AEGKFLVVEETI--NGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLR   81 (153)
T ss_dssp             EEEEEEEEE-ETTEEEEEEEEE--TTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCEEE
T ss_pred             ceEEEEEEE-eCCEEEEEEecC--CCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceEEE
Confidence            355655554 578999999872  2568999999999999999999999999999999998888876533322 222344


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~  316 (346)
                      ++|.+.... .....+++.|+.+++|++++++...+... ....+.++..+++
T Consensus        82 ~~f~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~-~~~~~~~l~~~~~  132 (153)
T 3shd_A           82 FLFAIELEQ-ICPTQPHDSDIDCCRWVSAEEILQASNLR-SPLVAESIRCYQS  132 (153)
T ss_dssp             EEEEEECSS-CCCCCCCSTTCCEEEEECHHHHHTCSCBS-STHHHHHHHHHHH
T ss_pred             EEEEEEccc-cCcCCCCcccceeeEEecHHHhhcccccc-CchHHHHHHHHHh
Confidence            566665532 22245667899999999999994433221 1245566666554

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.78  E-value=1.3e-18  Score=146.10  Aligned_cols=123  Identities=20%  Similarity=0.269  Sum_probs=88.5

Q ss_pred             ceEEEEEEEeCC-CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee--EEEEEEeeec-----
Q 019077          185 QIGVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL--EMVAFRHVHL-----  256 (346)
Q Consensus       185 ~v~V~avVin~~-~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~--~ll~~~~~~~-----  256 (346)
                      .++|+++|++.+ ++|||++|...   +|.|.+|||++|+||++.+||+||++||||+++...  .+++......     
T Consensus         9 ~~~v~~~i~~~~~~~vLl~~r~~~---~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   85 (150)
T 2o1c_A            9 PVSILVVIYAQDTKRVLMLQRRDD---PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFS   85 (150)
T ss_dssp             SEEEEEEEEETTTCEEEEEECSSS---TTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCG
T ss_pred             ceEEEEEEEeCCCCEEEEEEecCC---CCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeeeec
Confidence            378889999875 99999998743   589999999999999999999999999999998763  3444332211     


Q ss_pred             -----cc---cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077          257 -----VA---FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       257 -----~~---~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~  316 (346)
                           ..   ......+|.+...  .... ....|+.+++|++++++.++++.+   ..+.+++.+++
T Consensus        86 ~~~~~~~~~~~~~~~~~f~~~~~--~~~~-~~~~E~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~  147 (150)
T 2o1c_A           86 HLRHRYAPGVTRNTESWFCLALP--HERQ-IVFTEHLAYKWLDAPAAAALTKSW---SNRQAIEQFVI  147 (150)
T ss_dssp             GGGGGBCTTCCEEEEEEEEEEES--SCCC-CCCSSSSCEEEEEHHHHHHHCSCH---HHHHHHHHHTT
T ss_pred             ccccccCCCCcceEEEEEEEEcC--CCCC-cChhHhhccEeecHHHHHhhhcCH---HHHHHHHHHHH
Confidence                 11   1133445555543  2222 234789999999999999987765   34566666553

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.78  E-value=1.7e-19  Score=158.04  Aligned_cols=118  Identities=17%  Similarity=0.128  Sum_probs=88.8

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD  263 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~  263 (346)
                      +..+|++++++.+++|||+++.+.+.++|.|.+|||++|+||++.+||+||++||||+++.....++.............
T Consensus        40 ~~~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  119 (182)
T 2yvp_A           40 PVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVF  119 (182)
T ss_dssp             SCEEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCEE
T ss_pred             cCCEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccEE
Confidence            34678888888889999999985545678999999999999999999999999999999988777765433322223344


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      .+|++........+..+++|+.+++|++++++.++...
T Consensus       120 ~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  157 (182)
T 2yvp_A          120 HPFLALKARVVTPPTLEEGELLESLELPLTEVYALLAK  157 (182)
T ss_dssp             EEEEECSCEECSCCCCCTTCCEEEEEEEHHHHHHHHHT
T ss_pred             EEEEEeccccCCCCCCCCCceEEEEEEEHHHHHHHHHc
Confidence            55555422112334556789999999999999886443

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.78  E-value=1.4e-18  Score=150.85  Aligned_cols=114  Identities=24%  Similarity=0.268  Sum_probs=82.5

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD  263 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~  263 (346)
                      +..+|++++++ +++|||+++.+.+.+++.|.+|||++|+||++++||+||++||||+ +.....++.............
T Consensus        33 ~~~~v~vii~~-~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~~  110 (170)
T 1v8y_A           33 HKPAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEKT  110 (170)
T ss_dssp             ECCEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCEE
T ss_pred             cCCeEEEEEEE-CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccEE
Confidence            34678888888 8999999987655678999999999999999999999999999999 887777775543333223445


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEchhhhhcCCC
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                      .+|++.... ......+++|+.+++|++++++.++..
T Consensus       111 ~~f~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~  146 (170)
T 1v8y_A          111 HVFLAENLK-EVEAHPDEDEAIEVVWMRPEEALERHQ  146 (170)
T ss_dssp             EEEEEEEEE-ECC--------CEEEEECHHHHHHHHH
T ss_pred             EEEEEEecc-ccCCCCCCCceEEEEEEEHHHHHHHHH
Confidence            566665432 233445678899999999999987644

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.78  E-value=3.8e-18  Score=151.86  Aligned_cols=134  Identities=19%  Similarity=0.268  Sum_probs=88.0

Q ss_pred             ccceEEEEEEEeCCC-eEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCc-eeeeE----EEEEEeeec
Q 019077          183 SHQIGVGGFVMNDKR-EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD-TIFLE----MVAFRHVHL  256 (346)
Q Consensus       183 ~~~v~V~avVin~~~-~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~-v~~~~----ll~~~~~~~  256 (346)
                      ...++++++|+++++ +|||++++    ..|.|.+|||++|+||++.+||+||++||||++ +....    .+.......
T Consensus        43 ~~h~~~~~vv~~~~~~~vLL~~r~----~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  118 (197)
T 3fcm_A           43 IAHLTSSAFAVNKERNKFLMIHHN----IYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNG  118 (197)
T ss_dssp             SEEEEEEEEEECTTSCEEEEEEET----TTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECC
T ss_pred             CccEEEEEEEEECCCCEEEEEEec----CCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecC
Confidence            345678888888765 99999987    457999999999999999999999999999998 54211    111111110


Q ss_pred             -cccc-------eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCCCCC
Q 019077          257 -VAFE-------KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNG  324 (346)
Q Consensus       257 -~~~~-------~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~~~g  324 (346)
                       ...+       ...+.|++... ....+.++++|+.+++|++++++.++...+.   .+.+++.+++.+++.+.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~il~~~~~~l~~~~~~  190 (197)
T 3fcm_A          119 HIKRGKYVSSHLHLNLTYLIECS-EDETLMLKEDENSGVMWIPFNEISKYCSEPH---MIPIYEKLINKLKTQSKE  190 (197)
T ss_dssp             EEETTEEECCEEEEEEEEEEECC-TTSCCCCCC----CEEEEEGGGHHHHCCCGG---GHHHHHHHHHHHHC----
T ss_pred             ccccCcccCCceeEEEEEEEEeC-CCcccCCCcccccceEEccHHHHHhhcCCHH---HHHHHHHHHHHHHhcccc
Confidence             0001       12244555443 2334566778999999999999999876553   355788888888776443

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.78  E-value=2.7e-18  Score=148.73  Aligned_cols=132  Identities=20%  Similarity=0.254  Sum_probs=94.4

Q ss_pred             ccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEee-----ecc
Q 019077          183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHV-----HLV  257 (346)
Q Consensus       183 ~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~-----~~~  257 (346)
                      ..+.+|++++++.+++|||++|..    .+.|.+|||++++||++.+||+||++||||+++....+++....     .+.
T Consensus         6 ~~~~~v~~~i~~~~~~vLl~~r~~----~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~   81 (164)
T 2kdv_A            6 GYRPNVGIVICNRQGQVMWARRFG----QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPK   81 (164)
T ss_dssp             SEEEEEEEEEECTTSEEEEEEETT----CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCT
T ss_pred             CCCcEEEEEEEccCCEEEEEEEcC----CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCc
Confidence            355788889999889999999873    58999999999999999999999999999999988887765321     110


Q ss_pred             ----------ccceeEEEEEEEEecCCccccCC---ccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHh
Q 019077          258 ----------AFEKSDLLFVCMLKPLSFEITIY---EKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAY  318 (346)
Q Consensus       258 ----------~~~~~~~~fv~~l~~~~~~i~~~---~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~  318 (346)
                                ..+....+|++.+......+.++   +.|+.+++|++++++.+........+++.++..+...+
T Consensus        82 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~~l~~~~~~~~~~~l~~l~~~l  155 (164)
T 2kdv_A           82 RLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVV  155 (164)
T ss_dssp             TTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence                      01224567777765333344443   35899999999999876433222335555555555443

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.78  E-value=4.6e-18  Score=150.48  Aligned_cols=131  Identities=19%  Similarity=0.281  Sum_probs=96.5

Q ss_pred             CCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccc
Q 019077          180 GSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAF  259 (346)
Q Consensus       180 ~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~  259 (346)
                      .+..+.++|++++++ +++|||++|.+.+ ..|.|.||||++|+||++.+||+||++||||+++....++++....  ..
T Consensus        35 ~~~~~~~~v~~ii~~-~~~vLL~~r~~~~-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~--~~  110 (189)
T 3cng_A           35 HYQNPKVIVGCIPEW-ENKVLLCKRAIAP-YRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSLP--HI  110 (189)
T ss_dssp             ECCCCEEEEEEEEEE-TTEEEEEEESSSS-STTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEG--GG
T ss_pred             cCCCCceEEEEEEEe-CCEEEEEEccCCC-CCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEEecC--CC
Confidence            345556788888887 7899999998543 3789999999999999999999999999999999887777664332  22


Q ss_pred             ceeEEEEEEEEecCCccccCCccccceEEEEchhhhh--cCCCCCccHHHHHHHHHHHHHhcCC
Q 019077          260 EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFV--KQPFYLEDDMSRKVIDICIKAYDDR  321 (346)
Q Consensus       260 ~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~--~l~~~~~~~~~~~ii~~~l~~~~~~  321 (346)
                      ....++|.+...  ...+. .++|+.+++|++++++.  .+.++    ..+.++..+++..+..
T Consensus       111 ~~~~~~f~~~~~--~~~~~-~~~E~~~~~W~~~~el~~~~l~~~----~~~~~l~~~l~~~~~~  167 (189)
T 3cng_A          111 SQVYMLFRAKLL--DLDFF-PGIESLEVRLFGEQEIPWNDIAFR----VIHDPLKRYMEERHHG  167 (189)
T ss_dssp             TEEEEEEEEEEC--CSCCC-CCTTEEEEEEECTTTCCGGGBSCH----HHHHHHHHHHHHHHHS
T ss_pred             cEEEEEEEEEeC--CCccC-CCccceeEEEECHHHcCcccccCh----HHHHHHHHHHHhccCC
Confidence            345556666553  33333 36789999999999998  45443    3456666666655543

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.77  E-value=6.1e-19  Score=150.70  Aligned_cols=127  Identities=20%  Similarity=0.338  Sum_probs=88.0

Q ss_pred             ccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEE-EEeeeccc---
Q 019077          183 SHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVA-FRHVHLVA---  258 (346)
Q Consensus       183 ~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~-~~~~~~~~---  258 (346)
                      ..+.+|+++|++.+++|||++|..   .+|.|.+|||++|+||++.+||+||++||||+++....... ....+...   
T Consensus        12 ~~~~~v~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   88 (165)
T 1f3y_A           12 GYRRNVGICLMNNDKKIFAASRLD---IPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKV   88 (165)
T ss_dssp             SCCCEEEEEEECTTSCEEEEEETT---EEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHH
T ss_pred             ceeeeEEEEEECCCCcEEEEecCC---CCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCccc
Confidence            345778889999889999999973   24899999999999999999999999999999875322111 00011100   


Q ss_pred             ------------cceeEEEEEEEEecCCccccC-----CccccceEEEEchhhhhcCCCCCccHHHHHHHH
Q 019077          259 ------------FEKSDLLFVCMLKPLSFEITI-----YEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVID  312 (346)
Q Consensus       259 ------------~~~~~~~fv~~l~~~~~~i~~-----~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~  312 (346)
                                  .+....+|++.+......+..     +++|+.+++|++++++.++..+.....++++++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~~  159 (165)
T 1f3y_A           89 REKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLS  159 (165)
T ss_dssp             HHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHHBCGGGHHHHHHHHH
T ss_pred             cccccccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHHhhhhhHHHHHHHHH
Confidence                        122456788876543334443     356899999999999999765533224444433

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.77  E-value=7.3e-18  Score=147.68  Aligned_cols=122  Identities=18%  Similarity=0.199  Sum_probs=87.6

Q ss_pred             EEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEE
Q 019077          188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFV  267 (346)
Q Consensus       188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv  267 (346)
                      +.+++++++++|||++|.+. .+.|.|.+|||++|+||++.+||+||++||||+++....+++...............++
T Consensus        27 ~~~~vi~~~~~vLL~~r~~~-~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~  105 (176)
T 3q93_A           27 YTLVLVLQPQRVLLGMKKRG-FGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHV  105 (176)
T ss_dssp             EEEEEEECSSEEEEEEECSS-TTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCEEEEEE
T ss_pred             EEEEEEEeCCEEEEEEEcCC-CCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcEEEEEE
Confidence            34455667799999998643 36899999999999999999999999999999999888888766544332222223333


Q ss_pred             EEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077          268 CMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI  315 (346)
Q Consensus       268 ~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l  315 (346)
                      +.+....+.  +...|..+++|++++++.++++.+.+   +.++..++
T Consensus       106 f~~~~~~~~--~~~~e~~~~~W~~~~el~~~~~~~~~---~~~l~~~~  148 (176)
T 3q93_A          106 FCTDSIQGT--PVESDEMRPCWFQLDQIPFKDMWPDD---SYWFPLLL  148 (176)
T ss_dssp             EEESCEESC--CCCCSSEEEEEEETTCCCGGGBCTTH---HHHHHHHH
T ss_pred             EEEECCCCC--cCCCcceeeEEeeHHHccccccCcch---HHHHHHHH
Confidence            333222222  33456778899999999998887643   55566655

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.77  E-value=5.2e-18  Score=144.15  Aligned_cols=123  Identities=14%  Similarity=0.172  Sum_probs=85.2

Q ss_pred             ccceEEEEEEEeCCCe----EEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc
Q 019077          183 SHQIGVGGFVMNDKRE----VLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA  258 (346)
Q Consensus       183 ~~~v~V~avVin~~~~----VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~  258 (346)
                      ....+|+++|.+ +++    ||+++|.... ++| |.+|||++|+||++.+||+||++||||+++....+++........
T Consensus         6 ~~~~~~~~ii~~-~~~~~~~vLl~~r~~~~-~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   82 (155)
T 2b06_A            6 LTILTNICLIED-LETQRVVMQYRAPENNR-WSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDT   82 (155)
T ss_dssp             CEEEEEEEEEEE-TTTTEEEEEEEC------CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTT
T ss_pred             CcEEEEEEEEEE-CCCCeEEEEEEECCCCC-CCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccCC
Confidence            445677777777 445    8888887443 456 999999999999999999999999999999988888765544321


Q ss_pred             -cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077          259 -FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI  315 (346)
Q Consensus       259 -~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l  315 (346)
                       ......+|.+...  ...  ++..|..+++|++++++.++++...   .+.+++.+.
T Consensus        83 ~~~~~~~~~~~~~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~  133 (155)
T 2b06_A           83 GGRYIVICYKATEF--SGT--LQSSEEGEVSWVQKDQIPNLNLAYD---MLPLMEMME  133 (155)
T ss_dssp             SCEEEEEEEEECEE--EEC--CCCBTTBEEEEEEGGGGGGSCBCTT---HHHHHHHHH
T ss_pred             CceEEEEEEEEEec--CCC--CCCCcceeeEEeeHHHhhhCCCChh---HHHHHHHHh
Confidence             1223334444332  222  3346788999999999999987753   355665554

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.77  E-value=4.9e-18  Score=142.71  Aligned_cols=123  Identities=15%  Similarity=0.135  Sum_probs=88.6

Q ss_pred             CccceEEEEEEEeC-CCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc---
Q 019077          182 PSHQIGVGGFVMND-KREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV---  257 (346)
Q Consensus       182 ~~~~v~V~avVin~-~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~---  257 (346)
                      ...+.+++++|+++ +++|||++|.     .|.|.+|||++|+||++.+||+||++||||+++....+++.......   
T Consensus        15 ~~~~~~~~~vi~~~~~~~vLl~~r~-----~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   89 (148)
T 2azw_A           15 YQTRYAAYIIVSKPENNTMVLVQAP-----NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNH   89 (148)
T ss_dssp             CEECCEEEEECEEGGGTEEEEEECT-----TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETT
T ss_pred             eeeeeEEEEEEECCCCCeEEEEEcC-----CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCC
Confidence            44557788888886 6999999974     37999999999999999999999999999999988887765421111   


Q ss_pred             c---cceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077          258 A---FEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI  315 (346)
Q Consensus       258 ~---~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l  315 (346)
                      .   ......+|.+...  ... ....+|+.+++|++++++.++.+..   ..+.+++.++
T Consensus        90 ~~~~~~~~~~~~~~~~~--~~~-~~~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~  144 (148)
T 2azw_A           90 RQTAYYNPGYFYVANTW--RQL-SEPLERTNTLHWVAPEEAVRLLKRG---SHRWAVEKWL  144 (148)
T ss_dssp             TTEEEEEEEEEEEEEEE--EEC-SSCC-CCSEEEEECHHHHHHHBSCH---HHHHHHHHHH
T ss_pred             CCcceEEEEEEEEEEcC--cCC-cCCCCceeeEEEeeHHHHHhhhcch---hHHHHHHHHH
Confidence            1   1122345555443  222 2235678899999999999987654   3466666655

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.76  E-value=2.1e-18  Score=152.74  Aligned_cols=124  Identities=14%  Similarity=0.086  Sum_probs=87.0

Q ss_pred             CCCCCCCCccceEEEEEEEeCCC--eEEEEeecC-CCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEE
Q 019077          175 PCMLPGSPSHQIGVGGFVMNDKR--EVLVVKEKC-PRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF  251 (346)
Q Consensus       175 ~~~lp~~~~~~v~V~avVin~~~--~VLLvrr~~-~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~  251 (346)
                      +.+....+..+.++++++++.++  +|||++|.. .....|.|.+|||++|+||++.+||+||++||||+++...++++.
T Consensus        24 ~~~~~~~~~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~  103 (194)
T 1nqz_A           24 TRTALELPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGE  103 (194)
T ss_dssp             ---------CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred             ChhhccCCCCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEE
Confidence            33334445556677777778777  999999873 245689999999999999999999999999999999988888876


Q ss_pred             EeeeccccceeEEEEEEEEecCCcc-ccCCccccceEEEEchhhh-hcCC
Q 019077          252 RHVHLVAFEKSDLLFVCMLKPLSFE-ITIYEKEIQAAKWMPLEEF-VKQP  299 (346)
Q Consensus       252 ~~~~~~~~~~~~~~fv~~l~~~~~~-i~~~~~Ei~~~~Wv~~eel-~~l~  299 (346)
                      ........+....+|++.+.. ... ...+++|+.+++|++++++ .+..
T Consensus       104 ~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~E~~~~~W~~~~el~~~~~  152 (194)
T 1nqz_A          104 LDDVFTPVGFHVTPVLGRIAP-EALDTLRVTPEVAQIITPTLAELRAVPL  152 (194)
T ss_dssp             CCCEEETTTEEEEEEEEEECG-GGGGGCCCCTTEEEEECCBHHHHHHSCC
T ss_pred             ccCccCCCCeEEEEEEEEecC-CccccCCCccceeEEEEEEHHHhccCCC
Confidence            544433334455566666532 223 4567789999999999999 7643

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.76  E-value=1.9e-18  Score=154.21  Aligned_cols=146  Identities=18%  Similarity=0.230  Sum_probs=82.8

Q ss_pred             ceEEEEEEEe--CCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccccee
Q 019077          185 QIGVGGFVMN--DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKS  262 (346)
Q Consensus       185 ~v~V~avVin--~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~  262 (346)
                      ...++++|+.  ++++|||++|.+.   +|.|.+|||++|+||++++||+||++||||+++...++++......  ....
T Consensus        40 ~~~~~~vi~~~~~~~~vLLv~r~~~---~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~~--~~~~  114 (194)
T 2fvv_A           40 KKRAACLCFRSESEEEVLLVSSSRH---PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQE--RKHR  114 (194)
T ss_dssp             EEEEEEEEESSTTCCEEEEEECSSC---TTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETT--TTEE
T ss_pred             cccEEEEEEEECCCCEEEEEEEeCC---CCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcCC--CceE
Confidence            4556677763  4689999998742   4899999999999999999999999999999999888887665322  1233


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCCCCCccccccccccccccc
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGFIAHELASKLDGKLS  339 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~~~g~~~~~l~~~f~~~~~  339 (346)
                      ..+|++.+.........+..+..+++|++++++.++.... .......+..+..+..  +. .....++++|....+
T Consensus       115 ~~~f~~~~~~~~~~~~~~~e~~~~~~W~~~~el~~~l~~~-~~~~~~~l~~l~~~~~--~~-~~~~~~~~~f~~~~~  187 (194)
T 2fvv_A          115 TYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYH-KPVQASYFETLRQGYS--AN-NGTPVVATTYSVSAQ  187 (194)
T ss_dssp             EEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTTT-CHHHHHHTCC--------------------------
T ss_pred             EEEEEEEEccccCCCCCcccccceEEEEEHHHHHHHHhcC-cHHHHHHHHHHhhccc--cc-CchhccCcceEEeec
Confidence            4455555432111111112234689999999998864332 1233333333332221  33 366778999955443

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.76  E-value=3.2e-18  Score=146.43  Aligned_cols=118  Identities=21%  Similarity=0.329  Sum_probs=83.5

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEee-----------
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHV-----------  254 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~-----------  254 (346)
                      ++++++|++ +++|||++|..    .|.|.+|||++|+||++.+||+||++||||+++.....++....           
T Consensus         2 ~~~~~vi~~-~~~vLL~~r~~----~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   76 (156)
T 1k2e_A            2 IVTSGVLVE-NGKVLLVKHKR----LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLV   76 (156)
T ss_dssp             EEEEEECEE-TTEEEEEECTT----TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSE
T ss_pred             eEEEEEEEE-CCEEEEEEEcC----CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceeccceeeecccccccccccce
Confidence            467788888 78999999873    58999999999999999999999999999999877655321100           


Q ss_pred             -----eccccc---eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcC
Q 019077          255 -----HLVAFE---KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDD  320 (346)
Q Consensus       255 -----~~~~~~---~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~  320 (346)
                           ......   ....+|.+..         .+.|..+++|++++++.++++.+.   .+.+++.+++.++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~f~~~~---------~~~e~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l~~  138 (156)
T 1k2e_A           77 ILEEVVKYPEETHIHFDLIYLVKR---------VGGDLKNGEWIDVREIDRIETFPN---VRKVVSLALSTLYR  138 (156)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEEEE---------EEECCCSCEEEEGGGGGGSCBSTT---HHHHHHHHHHHHHH
T ss_pred             eeeeeecCCCCceEEEEEEEEEEe---------cCCcEeeeEEeCHHHHhcCCCChH---HHHHHHHHHHHHHh
Confidence                 001111   1223344432         234678999999999999887664   35666666655543

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.76  E-value=9.6e-18  Score=149.99  Aligned_cols=115  Identities=18%  Similarity=0.106  Sum_probs=87.9

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL  265 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~  265 (346)
                      .+|++++++++ +|||+++.+.+..++.|.+|||++|+||++++||+||++||||+++.....++.....+........+
T Consensus        50 ~av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~  128 (198)
T 1vhz_A           50 EAVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNI  128 (198)
T ss_dssp             CEEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEE
T ss_pred             CEEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcEEEE
Confidence            46666667776 99999987655567899999999999999999999999999999998888887665444333344455


Q ss_pred             EEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      |++.... ......++.|..++.|++++++.++....
T Consensus       129 f~a~~~~-~~~~~~~~~E~~~~~w~~~~el~~~~~~~  164 (198)
T 1vhz_A          129 VVAQDLY-PESLEGDEPEPLPQVRWPLAHMMDLLEDP  164 (198)
T ss_dssp             EEEEEEE-ECCCCCCCSSCCCEEEEEGGGGGGGGGCT
T ss_pred             EEEEeCC-cccCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            6665422 12334567889999999999999876543

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.76  E-value=3.5e-19  Score=146.12  Aligned_cols=111  Identities=19%  Similarity=0.286  Sum_probs=83.1

Q ss_pred             EEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEE
Q 019077          190 GFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCM  269 (346)
Q Consensus       190 avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~  269 (346)
                      ++|++.+++|||++|...+.++|.|.+|||++++||++.+||+||++||||+.+.....++...+..........+|.+.
T Consensus         9 ~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (129)
T 1mut_A            9 GIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVE   88 (129)
T ss_dssp             EECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCEEEE
T ss_pred             EEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEEEEE
Confidence            45668889999999986556789999999999999999999999999999999887666654332222222222345555


Q ss_pred             EecCCccccCCccccceEEEEchhhhhcCCCCCcc
Q 019077          270 LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED  304 (346)
Q Consensus       270 l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~  304 (346)
                      ..  ...  ++..|+.+++|++++++.++++++..
T Consensus        89 ~~--~~~--~~~~e~~~~~W~~~~el~~~~~~~~~  119 (129)
T 1mut_A           89 RW--EGE--PWGKEGQPGEWMSLVGLNADDFPPAN  119 (129)
T ss_dssp             EC--SSC--CCCCSSCCCEEEESSSCCTTTSCTTC
T ss_pred             cc--CCc--cCCcccceeEEeCHHHcccccCCchh
Confidence            42  222  34568889999999999999887654

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.75  E-value=1.3e-17  Score=147.79  Aligned_cols=122  Identities=18%  Similarity=0.262  Sum_probs=85.5

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccccee---
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKS---  262 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~---  262 (346)
                      ..++++|.+ +++|||++|.    ..|.|.+|||++|+||++.+||+||++||||+++...++++............   
T Consensus         5 ~v~~~vi~~-~~~vLL~~r~----~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   79 (188)
T 3fk9_A            5 RVTNCIVVD-HDQVLLLQKP----RRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSE   79 (188)
T ss_dssp             EEEEEEEEE-TTEEEEEECT----TTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEE
T ss_pred             EEEEEEEEE-CCEEEEEEeC----CCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEE
Confidence            344555555 6899999986    46899999999999999999999999999999998888876654443222211   


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~  316 (346)
                      .+.+++.+....+.+.. ..|..+++|++++++.++++.+.   .+.+++.+++
T Consensus        80 ~~~~~f~a~~~~~~~~~-~~e~~~~~W~~~~el~~~~l~~~---~~~~l~~~l~  129 (188)
T 3fk9_A           80 WMLFTFKATEHEGEMLK-QSPEGKLEWKKKDEVLELPMAAG---DKWIFKHVLH  129 (188)
T ss_dssp             EEEEEEEESCEESCCCS-EETTEEEEEEEGGGGGGSCCCHH---HHHHHHHHTT
T ss_pred             EEEEEEEEECCCCCCcC-CCCCEeEEEEEHHHhhhCCCCHH---HHHHHHHHHc
Confidence            13333333322333322 34557899999999999987753   4556666553

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.75  E-value=6.3e-18  Score=146.29  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=82.7

Q ss_pred             ceEEEEEEEeCCCeEEEEeec-CCCCCCCcee-eeeEEecCCCCHHHHHHHHHHHHhCCceeeeE--EEEEEeeeccccc
Q 019077          185 QIGVGGFVMNDKREVLVVKEK-CPRSCSGMWK-IPTGYINKSEDLFSGAVREVKEETGVDTIFLE--MVAFRHVHLVAFE  260 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~-~~~~~~g~W~-lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~--ll~~~~~~~~~~~  260 (346)
                      ..+++++|++.+++|||++|. ....++|.|. +|||++++||++.+||+||++||||+++....  .++....+.....
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~  113 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLS  113 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCS
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCc
Confidence            467888889888999999986 4444689999 99999999999999999999999999987743  3433321222222


Q ss_pred             eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077          261 KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       261 ~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      ....+|.+..   .+.+.+++.|+.+++|++++++.++
T Consensus       114 ~~~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~  148 (171)
T 1q27_A          114 SFMCVYELRS---DATPIFNPNDISGGEWLTPEHLLAR  148 (171)
T ss_dssp             SEEEEEEEEC---CCCCCSCTTTCSCCEEECHHHHHHH
T ss_pred             cEEEEEEEEE---CCccccCchhhheEEEecHHHHHHH
Confidence            2344455543   4455666789999999999999843

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.75  E-value=1.3e-17  Score=141.73  Aligned_cols=112  Identities=18%  Similarity=0.230  Sum_probs=81.7

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccc----
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE----  260 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~----  260 (346)
                      .++++++|++ +++|||++|      .|.|.+|||++++||++.+||+||++||||+++...++++.........+    
T Consensus        19 ~~~~~~ii~~-~~~vLl~~r------~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   91 (154)
T 2pqv_A           19 GVRATALIVQ-NHKLLVTKD------KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYH   91 (154)
T ss_dssp             EEEEEECCEE-TTEEEEEEE------TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEE
T ss_pred             eEEEEEEEEE-CCEEEEEec------CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcce
Confidence            3567777776 689999998      37899999999999999999999999999999988777765433222222    


Q ss_pred             eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCc
Q 019077          261 KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE  303 (346)
Q Consensus       261 ~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~  303 (346)
                      ...++|.+...........+++|+.+++|++++++.++++.+.
T Consensus        92 ~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~  134 (154)
T 2pqv_A           92 NIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNIQLVPV  134 (154)
T ss_dssp             EEEEEEEEEESSCCCSEEEETTEEEEEEEEEGGGGGGSCEEST
T ss_pred             EEEEEEEEEecCCCCcccCCCCceeeEEEeEHHHHhhcCcCcH
Confidence            1234555654321111112356788999999999999987764

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=3e-18  Score=144.27  Aligned_cols=113  Identities=23%  Similarity=0.292  Sum_probs=76.7

Q ss_pred             eEEEEEEEeCC-CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077          186 IGVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL  264 (346)
Q Consensus       186 v~V~avVin~~-~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~  264 (346)
                      ..++++|++++ ++|||+++.    ..|.|.+|||++++||++.+||+||++||||+++.....+....... ..+....
T Consensus         5 ~~~~~~i~~~~~~~vLl~~r~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~-~~~~~~~   79 (146)
T 2jvb_A            5 PVRGAAIFNENLSKILLVQGT----ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERN-IQGKNYK   79 (146)
T ss_dssp             CCEEEEEBCTTSSEEEEECCS----SSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEE-ETTEEEE
T ss_pred             EEEEEEEEeCCCCEEEEEEEc----CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccc-cCCceEE
Confidence            34667788875 999999987    35899999999999999999999999999999886432221111111 1122223


Q ss_pred             EEEEEEecCCccccC-CccccceEEEEchhhhhcCCCCCc
Q 019077          265 LFVCMLKPLSFEITI-YEKEIQAAKWMPLEEFVKQPFYLE  303 (346)
Q Consensus       265 ~fv~~l~~~~~~i~~-~~~Ei~~~~Wv~~eel~~l~~~~~  303 (346)
                      +|++..........+ +++|+.+++|++++++.++.....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~  119 (146)
T 2jvb_A           80 IFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSN  119 (146)
T ss_dssp             EEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGCSS
T ss_pred             EEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhcccc
Confidence            333322212222233 367899999999999999766544

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.74  E-value=1.4e-17  Score=149.58  Aligned_cols=117  Identities=16%  Similarity=0.188  Sum_probs=82.2

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEec-CCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYIN-KSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL  264 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve-~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~  264 (346)
                      .+|++++++.+++|||+++.+.+.+.+.|.||||++| +||++.+||+||++||||+++.....++..+...........
T Consensus        44 ~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~  123 (207)
T 1mk1_A           44 GAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVR  123 (207)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEE
T ss_pred             CEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccEEE
Confidence            5777888888899999998866567789999999999 999999999999999999999888877654333222222445


Q ss_pred             EEEEEEecCCcc-ccCCccccceEEEEchhhhhcCCCCC
Q 019077          265 LFVCMLKPLSFE-ITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       265 ~fv~~l~~~~~~-i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      +|++........ ...+++|+.+++|++++++.++....
T Consensus       124 ~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~  162 (207)
T 1mk1_A          124 VYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRG  162 (207)
T ss_dssp             EEEEEEEEECCC----------CEEEEEHHHHHHHHHTT
T ss_pred             EEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHHHHcC
Confidence            566654221111 12456789999999999998875543

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.73  E-value=4.2e-17  Score=141.55  Aligned_cols=118  Identities=15%  Similarity=0.240  Sum_probs=83.3

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL  264 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~  264 (346)
                      .+.++++|++.+++|||++|+     .|.|.+|||++|+||++.+||+||++||||+++....+++......    ....
T Consensus        15 ~~~~~~~ii~~~~~vLL~~r~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~----~~~~   85 (163)
T 3f13_A           15 LARRATAIIEMPDGVLVTASR-----GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF----NAHK   85 (163)
T ss_dssp             CEEEEEEECEETTEEEEEECC--------BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS----EEEE
T ss_pred             ceEEEEEEEEeCCEEEEEEEC-----CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC----eEEE
Confidence            455666666677899999886     4799999999999999999999999999999998888776432221    3455


Q ss_pred             EEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhc
Q 019077          265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYD  319 (346)
Q Consensus       265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~  319 (346)
                      +|+|.+   ++.+.+. +|+.+++|++ .+...+++.+   ..+.+++.+++...
T Consensus        86 ~f~~~~---~~~~~~~-~E~~~~~W~~-~~~~~~~l~~---~~~~il~~~~~~~~  132 (163)
T 3f13_A           86 VYLCIA---QGQPKPQ-NEIERIALVS-SPDTDMDLFV---EGRAILRRYARLRN  132 (163)
T ss_dssp             EEEEEC----CCCCCC-TTCCEEEEES-STTCSSCBCH---HHHHHHHHHHHHTT
T ss_pred             EEEEEE---CCcCccC-CCceEEEEEC-cccccCCCCH---HHHHHHHHHHHhhh
Confidence            666643   3455543 4899999999 4444445443   45667777776544

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.72  E-value=9.3e-18  Score=148.25  Aligned_cols=130  Identities=13%  Similarity=0.150  Sum_probs=91.5

Q ss_pred             eEEEEEEEeCCCeEEEEeec-CCCCCCCceee-eeEEecCCCCHHHHHHHHHHHHhCCceeee-EEEEEEeee-cccc--
Q 019077          186 IGVGGFVMNDKREVLVVKEK-CPRSCSGMWKI-PTGYINKSEDLFSGAVREVKEETGVDTIFL-EMVAFRHVH-LVAF--  259 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~-~~~~~~g~W~l-PGG~ve~GEs~~eAA~REv~EETGl~v~~~-~ll~~~~~~-~~~~--  259 (346)
                      .+|+++|++++++|||++|. ....++|.|.+ |||++|+||++++||+||++||||+++... .+++..... ....  
T Consensus        33 ~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  112 (190)
T 1hzt_A           33 LAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGI  112 (190)
T ss_dssp             ECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSC
T ss_pred             EEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCC
Confidence            46788889888999999987 44446899999 999999999999999999999999999876 555422111 1111  


Q ss_pred             --ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCc---cHHHHHHHHHHHHHh
Q 019077          260 --EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE---DDMSRKVIDICIKAY  318 (346)
Q Consensus       260 --~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~---~~~~~~ii~~~l~~~  318 (346)
                        .....+|++..   .+.+.++++|+.+++|++++++.++.....   ...++.+++.++++.
T Consensus       113 ~~~~~~~~f~~~~---~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~p~~~~~~~~~~~~~  173 (190)
T 1hzt_A          113 VENEVCPVFAART---TSALQINDDEVMDYQWCDLADVLHGIDATPWAFSPWMVMQATNREARK  173 (190)
T ss_dssp             EEEEECCEEEEEB---CSCCCCCTTTEEEEEEECHHHHHHHHHHCGGGBCHHHHHHHHSHHHHH
T ss_pred             cceEEEEEEEEec---CCCCcCCccceeeEEEecHHHHHHHHHcChhhcCchHHHHHHHHHHHH
Confidence              11223455543   235556678999999999999987632111   125566666666544

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.72  E-value=2e-17  Score=140.96  Aligned_cols=127  Identities=15%  Similarity=0.208  Sum_probs=89.7

Q ss_pred             ccceEEEEEEEeC---CCeEEEEeecCCCCCCCceeeeeEEecCCCCHH-HHHHHHHHHHhC-CceeeeEEEEEEeeecc
Q 019077          183 SHQIGVGGFVMND---KREVLVVKEKCPRSCSGMWKIPTGYINKSEDLF-SGAVREVKEETG-VDTIFLEMVAFRHVHLV  257 (346)
Q Consensus       183 ~~~v~V~avVin~---~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~-eAA~REv~EETG-l~v~~~~ll~~~~~~~~  257 (346)
                      .++..+.++|.++   +++|||++|...+.++|.|.||||.+++||++. +||+||++|||| +.+.....++...+...
T Consensus        17 ~~~~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~   96 (155)
T 1x51_A           17 REESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFS   96 (155)
T ss_dssp             TEEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCS
T ss_pred             CeEEEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecC
Confidence            3445565666664   589999999866667899999999999999996 999999999999 88766666543322222


Q ss_pred             ccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077          258 AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       258 ~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~  316 (346)
                      .+.....+|.|..  ..+.  +...|..+++|++++++.+++++.   ..+++++.+..
T Consensus        97 ~~~~~~~~~~~~~--~~~~--~~~~e~~~~~W~~~~el~~~~~~~---~~~~~l~~~~~  148 (155)
T 1x51_A           97 HIKLTYQVYGLAL--EGQT--PVTTVPPGARWLTQEEFHTAAVST---AMKKVFRVYQG  148 (155)
T ss_dssp             SCEEEEEEEEEEC--SSCC--CCCCCCTTEEEEEHHHHHHSCCCH---HHHHHHHHHHH
T ss_pred             CccEEEEEEEEEE--cCCC--CCCCCCCccEEccHHHhhhcCCCH---HHHHHHHHHHh
Confidence            2222333455543  2222  234567889999999999998865   45667766654

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.72  E-value=6.8e-19  Score=165.26  Aligned_cols=168  Identities=20%  Similarity=0.205  Sum_probs=99.9

Q ss_pred             HHHHHHh--HHhHhcCc-eeEEEEccccccCchHHHHhccc---ceecCCCceeEeeccccCCCCCCCC---CCccceEE
Q 019077          118 SALRASL--SNWKLKGK-KGVWLKILSKQADLVPIAIQEGF---SYHHAEPGYVMLTYWIPVEPCMLPG---SPSHQIGV  188 (346)
Q Consensus       118 ~~l~~sl--~~w~~~~~-r~vw~~l~~~~~~l~~~a~~~gf---~~H~~~~~~~~l~~wl~~~~~~lp~---~~~~~v~V  188 (346)
                      ..|-.+|  .+|--.+. +..+.++|.        +...+|   .|||+.    ++..|.+.....++.   +.....++
T Consensus        37 ~~~~f~ie~a~wfy~d~~~~~~~~~p~--------~~~~~f~~~~f~~~~----~l~~~~~~~~~~~~~~~~~~~~v~~v  104 (271)
T 2a6t_A           37 ERLCFQIEQAHWFYEDFIRAQNDQLPS--------LGLRVFSAKLFAHCP----LLWKWSKVHEEAFDDFLRYKTRIPVR  104 (271)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHCSSSCC--------CCHHHHHHHHHTTCH----HHHHC---CCHHHHHHHHHSCCCCEE
T ss_pred             HHHHHHHHHHHHHHHHhhhhcccCCCc--------ccHHHHHHHHhhhhh----hhhcccccchhHHHHHHhcCCCCCeE
Confidence            4455555  66665554 332333333        223445   788876    455666533222221   22233567


Q ss_pred             EEEEEeC-CCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEE
Q 019077          189 GGFVMND-KREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFV  267 (346)
Q Consensus       189 ~avVin~-~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv  267 (346)
                      +++|+++ +++|||++|.+.   +|.|.+|||++|+||++.+||+||++||||+++.....+..+. .....+....+|+
T Consensus       105 ~avv~~~~~~~vLLv~r~~~---~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~~~~~-~~~~~~~~~~~f~  180 (271)
T 2a6t_A          105 GAIMLDMSMQQCVLVKGWKA---SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFI-DMTIRGQNVRLYI  180 (271)
T ss_dssp             EEEEBCSSSSEEEEEEESST---TCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEE-EEEETTEEEEEEE
T ss_pred             EEEEEECCCCEEEEEEEeCC---CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeeeeeec-cCCcCCceEEEEE
Confidence            7888886 489999999742   5889999999999999999999999999999987632221111 1111122345566


Q ss_pred             EEEecCCccccC-CccccceEEEEchhhhhcCCCC
Q 019077          268 CMLKPLSFEITI-YEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       268 ~~l~~~~~~i~~-~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      +........+.+ +++|+.+++|++++++.++...
T Consensus       181 ~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~  215 (271)
T 2a6t_A          181 IPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKN  215 (271)
T ss_dssp             ECCCCTTCCCC------EEEEEEEEGGGSTTCC--
T ss_pred             EEEecCcccCCCCCccceeEEEEEEHHHHHHHHhc
Confidence            654332333333 5679999999999999987654

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.72  E-value=3.1e-17  Score=147.85  Aligned_cols=115  Identities=15%  Similarity=0.010  Sum_probs=82.4

Q ss_pred             eEEEEEEEe-CCCeEEEEeecCCCCC-----CCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccc
Q 019077          186 IGVGGFVMN-DKREVLVVKEKCPRSC-----SGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAF  259 (346)
Q Consensus       186 v~V~avVin-~~~~VLLvrr~~~~~~-----~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~  259 (346)
                      .+|++++++ ++++|||+++.+.+..     ++.|++|||++|+||++++||+||++||||+++.....++.....+...
T Consensus        58 ~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g~~  137 (209)
T 1g0s_A           58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGT  137 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTTB
T ss_pred             CEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCCcc
Confidence            578888888 5789999987654432     5789999999999999999999999999999998888777554333332


Q ss_pred             ceeEEEEEEEEecC--Cc-cccCCccccceEEEEchhhhhcCCC
Q 019077          260 EKSDLLFVCMLKPL--SF-EITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       260 ~~~~~~fv~~l~~~--~~-~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                      .....+|++.....  .+ ....+++|..++.|++++++.++..
T Consensus       138 ~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~  181 (209)
T 1g0s_A          138 SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVE  181 (209)
T ss_dssp             CCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHH
T ss_pred             CcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHH
Confidence            33445566654221  11 1234677888999999999987643

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.70  E-value=3.9e-17  Score=145.03  Aligned_cols=112  Identities=13%  Similarity=0.089  Sum_probs=81.8

Q ss_pred             eEEEEEEEeC-CCeEEEEeecCCCC------CCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc
Q 019077          186 IGVGGFVMND-KREVLVVKEKCPRS------CSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA  258 (346)
Q Consensus       186 v~V~avVin~-~~~VLLvrr~~~~~------~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~  258 (346)
                      .+|++++++. +++|||+++.+.+.      +.+.|++|||++| ||++.+||+||++||||+++.....++.....+..
T Consensus        46 ~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~~~  124 (191)
T 3o6z_A           46 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG  124 (191)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCTTT
T ss_pred             CEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCCCc
Confidence            5677888885 58999999875432      5789999999999 99999999999999999999888888765444433


Q ss_pred             cceeEEEEEEEEecCCc---cccCCccccceEEEEchhhhhcCC
Q 019077          259 FEKSDLLFVCMLKPLSF---EITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       259 ~~~~~~~fv~~l~~~~~---~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      ......+|++.......   .... ++|+.+++|++++++.++.
T Consensus       125 ~~~~~~~f~~~~~~~~~~~~~~~~-~~E~~~~~w~~~~el~~~~  167 (191)
T 3o6z_A          125 VTELIHFFIAEYSDNQRANAGGGV-EDEAIEVLELPFSQALEMI  167 (191)
T ss_dssp             BCCEEEEEEEECCTTCC---------CCSSEEEEEEHHHHHHHH
T ss_pred             cCcEEEEEEEEEcccccccCCCCC-CCcEEEEEEEEHHHHHHHH
Confidence            34455566665432110   1122 6789999999999998753

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.69  E-value=7.4e-17  Score=155.35  Aligned_cols=137  Identities=14%  Similarity=0.232  Sum_probs=94.4

Q ss_pred             CCCCCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEE----EEEEe
Q 019077          178 LPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEM----VAFRH  253 (346)
Q Consensus       178 lp~~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~l----l~~~~  253 (346)
                      ...++...++|+++|+ .+++|||++|.+.+ +.|.|.+|||++|+||++++||+||++||||+++....+    .....
T Consensus       201 ~~~~~~~~~~v~~vv~-~~~~vLL~~r~~~~-~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~  278 (352)
T 2qjt_B          201 KAPFKPNFVTVDALVI-VNDHILMVQRKAHP-GKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKV  278 (352)
T ss_dssp             SSSSCCEEEEEEEEEE-ETTEEEEEEESSSS-STTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEE
T ss_pred             ccCCCCCceEEEEEEE-ECCEEEEEEEcCCC-CCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEE
Confidence            3456667788888888 46899999998543 478999999999999999999999999999999874322    11111


Q ss_pred             e-eccc--cc-eeEEEEEEEEecCCcccc-CCccccceEEEEch-hhhhcC--CCCCccHHHHHHHHHHHHHhc
Q 019077          254 V-HLVA--FE-KSDLLFVCMLKPLSFEIT-IYEKEIQAAKWMPL-EEFVKQ--PFYLEDDMSRKVIDICIKAYD  319 (346)
Q Consensus       254 ~-~~~~--~~-~~~~~fv~~l~~~~~~i~-~~~~Ei~~~~Wv~~-eel~~l--~~~~~~~~~~~ii~~~l~~~~  319 (346)
                      . .+..  .+ ...+.|++.+......+. .+++|+.+++|+++ +++.++  ++.+.   .+.+++.++++++
T Consensus       279 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~~~~~~~~---~~~il~~~~~~l~  349 (352)
T 2qjt_B          279 FDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDRMLED---HYQIITILLEECG  349 (352)
T ss_dssp             ECCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHTTTSBSTT---HHHHHHHHHHHTC
T ss_pred             ecCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhhhhhhChh---HHHHHHHHHHHhc
Confidence            1 1111  11 234556666532211122 24678999999999 999987  44442   3667777777663

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.69  E-value=5e-17  Score=155.56  Aligned_cols=131  Identities=21%  Similarity=0.283  Sum_probs=84.8

Q ss_pred             CCccceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEE------EEee
Q 019077          181 SPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVA------FRHV  254 (346)
Q Consensus       181 ~~~~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~------~~~~  254 (346)
                      ++...++|+++|++ +++|||++|.... ..|.|.+|||++|+||++++||+||++||||+++....+++      .+..
T Consensus       199 ~~~~~~~v~~vi~~-~~~vLL~~r~~~~-~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  276 (341)
T 2qjo_A          199 YAPTFITTDAVVVQ-AGHVLMVRRQAKP-GLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDA  276 (341)
T ss_dssp             SCCCEEEEEEEEEE-TTEEEEEECCSSS-STTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECC
T ss_pred             CCCCceEEEEEEEe-CCEEEEEEecCCC-CCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeC
Confidence            55666888888885 6899999998532 47999999999999999999999999999999987544321      1111


Q ss_pred             ecc-cc-ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcC--CCCCccHHHHHHHHHHHH
Q 019077          255 HLV-AF-EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ--PFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       255 ~~~-~~-~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l--~~~~~~~~~~~ii~~~l~  316 (346)
                      ... .. ....++|++.+.........+++|+.+++|++++++.++  ++.+.   .+.+++.+++
T Consensus       277 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~---~~~il~~~~~  339 (341)
T 2qjo_A          277 PGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYAQEEQIYED---HFQIIQHFVS  339 (341)
T ss_dssp             TTSCTTSCEEEEEEEEECCSSSCCCCC------CEEEEEHHHHHHTGGGBCTT---HHHHHHHHC-
T ss_pred             CCCCCCCcEEEEEEEEEecCCCcCccCCCCceeeEEEeeHHHHhhhhhhhchH---HHHHHHHHHh
Confidence            111 01 123456666653211111245688999999999999997  45443   3556665554

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.68  E-value=6.4e-17  Score=147.22  Aligned_cols=117  Identities=19%  Similarity=0.137  Sum_probs=81.1

Q ss_pred             ccceEEEEEEEe-CCCeEEEEeecCCCCC-------------------------------CCceeeeeEEecC-CCCHHH
Q 019077          183 SHQIGVGGFVMN-DKREVLVVKEKCPRSC-------------------------------SGMWKIPTGYINK-SEDLFS  229 (346)
Q Consensus       183 ~~~v~V~avVin-~~~~VLLvrr~~~~~~-------------------------------~g~W~lPGG~ve~-GEs~~e  229 (346)
                      .+..+|++++++ .++++||+++.+++..                               ++.|++|||++|+ ||++++
T Consensus        34 ~~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~e  113 (218)
T 3q91_A           34 KTHDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEE  113 (218)
T ss_dssp             -CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHH
T ss_pred             EcCCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHH
Confidence            345688888888 4589999988754322                               6899999999999 999999


Q ss_pred             HHHHHHHHHhCCce--eeeEEEEEEeeeccccceeEEEEEEEEecC----CccccCCccccceEEEEchhhhhcCC
Q 019077          230 GAVREVKEETGVDT--IFLEMVAFRHVHLVAFEKSDLLFVCMLKPL----SFEITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       230 AA~REv~EETGl~v--~~~~ll~~~~~~~~~~~~~~~~fv~~l~~~----~~~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      ||+||++||||+.+  .....++.....+........+|++.....    .....++++|+.++.|++++++.++.
T Consensus       114 aA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~el~~~i  189 (218)
T 3q91_A          114 VACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFA  189 (218)
T ss_dssp             HHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGGGHHHHH
T ss_pred             HHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHHHHHHHH
Confidence            99999999999998  666666654443333344556666665321    12345667899999999999998753

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.68  E-value=9.8e-17  Score=144.62  Aligned_cols=104  Identities=16%  Similarity=0.123  Sum_probs=76.4

Q ss_pred             CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEEEEecCCc-
Q 019077          197 REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSF-  275 (346)
Q Consensus       197 ~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~~l~~~~~-  275 (346)
                      ++|||+++.+.+..++.|.||||++|+||++++||+||++||||+.+....+++.....+........+|++.+..... 
T Consensus        77 ~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~  156 (212)
T 2dsc_A           77 ECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAE  156 (212)
T ss_dssp             CEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSGG
T ss_pred             cEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEEEEEEEeCcccc
Confidence            5899998765444567899999999999999999999999999999987777654333322223344556665442221 


Q ss_pred             ----cccCCccccceEEEEchhhhhcCCC
Q 019077          276 ----EITIYEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       276 ----~i~~~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                          ...++++|+.+++|++++++.++..
T Consensus       157 ~~~~~~~~~~~E~~~~~w~~~~el~~~~~  185 (212)
T 2dsc_A          157 NARPKPKPGDGEFVEVISLPKNDLLQRLD  185 (212)
T ss_dssp             GSSCCCCCCTTCCCEEEEEEGGGHHHHHH
T ss_pred             ccCCCCCCCCCceEEEEEEEHHHHHHHHH
Confidence                3345678999999999999987643

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.66  E-value=1e-16  Score=145.05  Aligned_cols=109  Identities=22%  Similarity=0.284  Sum_probs=76.1

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCC---CCCCceee-eeEEecCCCC------HHHHHHHHHHHHhCCceeeeEEEEEEeee
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPR---SCSGMWKI-PTGYINKSED------LFSGAVREVKEETGVDTIFLEMVAFRHVH  255 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~---~~~g~W~l-PGG~ve~GEs------~~eAA~REv~EETGl~v~~~~ll~~~~~~  255 (346)
                      ..+..+|++.+++|||++|...+   ...|.|.+ |||+||+||+      +++||+||++||||+++....++++....
T Consensus        68 q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~  147 (211)
T 3e57_A           68 QVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSS  147 (211)
T ss_dssp             EEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECC
T ss_pred             ceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEecc
Confidence            33444555567999999998432   13578999 9999999998      49999999999999999888888876543


Q ss_pred             ccccce--eEEEEEEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077          256 LVAFEK--SDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       256 ~~~~~~--~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      ....+.  ..++|.|...    ...+.+.|..+++|++++++.++
T Consensus       148 ~~~~~~~~l~~~f~~~~~----~g~~~~~E~~~~~W~~~~eL~~~  188 (211)
T 3e57_A          148 TTEVSRVHLGALFLGRGK----FFSVKEKDLFEWELIKLEELEKF  188 (211)
T ss_dssp             SSHHHHTEEEEEEEEEEE----EEEESCTTTCEEEEEEHHHHHHH
T ss_pred             CCCCCeEEEEEEEEEEeC----CceeCCCCeEEEEEEEHHHHHHh
Confidence            322222  2335666543    23445678889999999999987

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.65  E-value=1.1e-15  Score=148.69  Aligned_cols=119  Identities=20%  Similarity=0.215  Sum_probs=85.9

Q ss_pred             CCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc-------------cce
Q 019077          195 DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA-------------FEK  261 (346)
Q Consensus       195 ~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~-------------~~~  261 (346)
                      ++.+|||++|.    ..|.|.||||++|+||++.+||+||++||||+++....+++........             ...
T Consensus        36 ~~~~vLLv~r~----~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~  111 (364)
T 3fjy_A           36 DSIEVCIVHRP----KYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTK  111 (364)
T ss_dssp             TTEEEEEEEET----TTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------
T ss_pred             CceEEEEEEcC----CCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCce
Confidence            44699999996    3489999999999999999999999999999999888887754332221             124


Q ss_pred             eEEEEEEEEecCC----------ccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcC
Q 019077          262 SDLLFVCMLKPLS----------FEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDD  320 (346)
Q Consensus       262 ~~~~fv~~l~~~~----------~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~  320 (346)
                      ...+|++......          .....+++|+.+++|++++++.++...+   ..+.+++.+++.+++
T Consensus       112 ~~~~f~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~---~~r~il~~~~~~l~~  177 (364)
T 3fjy_A          112 HTLYWMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHS---TDKDTLAVFVDRVQE  177 (364)
T ss_dssp             CEEEEEEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHHCSCH---HHHHHHHHHHHHHHT
T ss_pred             EEEEEEEEecCCccccccccccCccccCCccceeeeecCcHHHHHHHhcch---hhHHHHHHHHHHhcc
Confidence            4556666553211          1113456899999999999999876554   346777777777754

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.64  E-value=1.8e-15  Score=147.71  Aligned_cols=124  Identities=14%  Similarity=0.085  Sum_probs=95.0

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL  264 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~  264 (346)
                      ...+.++|+|++++|||+||...+.++|.|+||||++|+| ++++|++||++||||+++...+.++...+....+.....
T Consensus       240 ~~~~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~  318 (369)
T 3fsp_A          240 VPLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLT  318 (369)
T ss_dssp             EEEEEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEE
T ss_pred             EEEEEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEE
Confidence            3455666677889999999997667899999999999999 999999999999999999887766654444433333444


Q ss_pred             EEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhc
Q 019077          265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYD  319 (346)
Q Consensus       265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~  319 (346)
                      +|.+...  .+     ..|..+++|++++++.+++++.   ..+++++.+.+.+.
T Consensus       319 ~~~~~~~--~~-----~~e~~~~~Wv~~~el~~~~l~~---~~~~il~~l~~~~~  363 (369)
T 3fsp_A          319 VFPGRLV--HG-----GPVEEPYRLAPEDELKAYAFPV---SHQRVWREYKEWAS  363 (369)
T ss_dssp             EEEEEEC--CS-----SCCCTTEEEEEGGGGGGSCCCH---HHHHHHHHHHHHTC
T ss_pred             EEEEEEc--CC-----CCCccccEEeeHHHhhhCCCCH---HHHHHHHHHHHHhc
Confidence            5555542  11     4577899999999999998876   55777777776554

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.57  E-value=2.3e-14  Score=131.67  Aligned_cols=126  Identities=13%  Similarity=0.135  Sum_probs=87.6

Q ss_pred             eEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCC------CC---HHHHHHHHHHHHhCCceee-----eEEE
Q 019077          186 IGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKS------ED---LFSGAVREVKEETGVDTIF-----LEMV  249 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~G------Es---~~eAA~REv~EETGl~v~~-----~~ll  249 (346)
                      .++.++|+|.+++|||++|. .+..++|.|.+| ||++++|      |+   +.+||+||++|||||.+..     ...+
T Consensus        60 ~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l  139 (235)
T 2dho_A           60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYL  139 (235)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEE
T ss_pred             EEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcEEE
Confidence            56778888988999999987 444578999999 5999999      88   4999999999999998652     3445


Q ss_pred             EEEee-eccccc----eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcC---------CCCCccHHHHHHHHHHH
Q 019077          250 AFRHV-HLVAFE----KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ---------PFYLEDDMSRKVIDICI  315 (346)
Q Consensus       250 ~~~~~-~~~~~~----~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l---------~~~~~~~~~~~ii~~~l  315 (346)
                      +.... .....+    ....+|++..   ..++.++++|+.+++|++++++.++         .+.+   .++.+++.++
T Consensus       140 ~~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~~el~~~l~~~~~~~~~ftp---~~~~i~~~~L  213 (235)
T 2dho_A          140 TRIHYKAQSDGIWGEHEIDYILLVRM---NVTLNPDPNEIKSYCYVSKEELKELLKKAASGEIKITP---WFKIIAATFL  213 (235)
T ss_dssp             EEEEEEEECSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHHHHHHHTTSSCBCH---HHHHHHHHTH
T ss_pred             EEEEEeccCCCccceeEEEEEEEEEE---CCCCcCChHHEEEEEEEcHHHHHHHHhhccCCCcEECH---hHHHHHHHHH
Confidence            43322 111111    1233444443   3456677899999999999999764         2322   4555666655


Q ss_pred             HH
Q 019077          316 KA  317 (346)
Q Consensus       316 ~~  317 (346)
                      ..
T Consensus       214 ~~  215 (235)
T 2dho_A          214 FK  215 (235)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.56  E-value=4.7e-14  Score=130.49  Aligned_cols=127  Identities=12%  Similarity=0.115  Sum_probs=88.7

Q ss_pred             eEEEEEEEeCCCeEEEEeec-CCCCCCCceeeee-EEecCC------CCH---HHHHHHHHHHHhCCceee-----eEEE
Q 019077          186 IGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIPT-GYINKS------EDL---FSGAVREVKEETGVDTIF-----LEMV  249 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lPG-G~ve~G------Es~---~eAA~REv~EETGl~v~~-----~~ll  249 (346)
                      .++.++|+|.+++|||+||. .+..++|.|.+|+ |++++|      |++   .+||+||++|||||.+..     ...+
T Consensus        71 ~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l  150 (246)
T 2pny_A           71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIVFM  150 (246)
T ss_dssp             EEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEE
T ss_pred             EEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccEEE
Confidence            46777888988999999997 4446789999995 999999      887   999999999999998652     3444


Q ss_pred             EEEee-eccccc----eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcC---------CCCCccHHHHHHHHHHH
Q 019077          250 AFRHV-HLVAFE----KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ---------PFYLEDDMSRKVIDICI  315 (346)
Q Consensus       250 ~~~~~-~~~~~~----~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l---------~~~~~~~~~~~ii~~~l  315 (346)
                      +.... ......    ....+|++..   ..++.++++|+.+++|++++++.++         .+.+   .++.+++.++
T Consensus       151 ~~~~y~~~~~~~~~~~e~~~vf~~~~---~~~~~~~~~Ev~~~~wv~~eel~~~l~~~~~~~~~ftp---~~~~i~~~~l  224 (246)
T 2pny_A          151 TIYHHKAKSDRIWGEHEICYLLLVRK---NVTLNPDPSETKSILYLSQEELWELLEREARGEVKVTP---WLRTIAERFL  224 (246)
T ss_dssp             EEEEEEEESSSSBEEEEEEEEEEEEC---CCCCCCCTTTEEEEEEECHHHHHHHHHHHHHTSSCBCH---HHHHHHHHTH
T ss_pred             EEEEEEecCCCceeeeEEEEEEEEEE---CCCCCCChHHeeEEEEEeHHHHHHHHHhccCCCceECH---hHHHHHHHHH
Confidence            43221 111111    1223444432   3456677899999999999999764         2322   4566666666


Q ss_pred             HHh
Q 019077          316 KAY  318 (346)
Q Consensus       316 ~~~  318 (346)
                      ...
T Consensus       225 ~~w  227 (246)
T 2pny_A          225 YRW  227 (246)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.52  E-value=1e-14  Score=131.75  Aligned_cols=104  Identities=19%  Similarity=0.162  Sum_probs=74.2

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCC-CHHHHHHHHHHHHhCCceeeeE-----EEEEEeeeccccc
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSE-DLFSGAVREVKEETGVDTIFLE-----MVAFRHVHLVAFE  260 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GE-s~~eAA~REv~EETGl~v~~~~-----ll~~~~~~~~~~~  260 (346)
                      ++.+++++++++|||++|.     .|.|.||||++|+|| ++++||+||++||||+.+....     .++....... ..
T Consensus        46 ~vv~~i~~~~~~vLl~~r~-----~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~  119 (212)
T 1u20_A           46 AKLFDRVPIRRVLLMMMRF-----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QK  119 (212)
T ss_dssp             CEETTTEECCEEEEEEEET-----TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SC
T ss_pred             eEEEEEEecCCEEEEEEeC-----CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-Cc
Confidence            3445556778899999873     589999999999999 9999999999999999987553     3433222211 34


Q ss_pred             eeEEEEEEEEecCCcccc----------CCccccceEEEEchhhhhcC
Q 019077          261 KSDLLFVCMLKPLSFEIT----------IYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       261 ~~~~~fv~~l~~~~~~i~----------~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      ....+|+|...  .+.+.          .++.|+.++.|+|++++.+.
T Consensus       120 ~~~~~f~~~~~--~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~  165 (212)
T 1u20_A          120 CVTHFYIKELK--LEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  165 (212)
T ss_dssp             EEEEEEEEECC--HHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             EEEEEEEEEec--CCCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence            44556666542  22221          23567889999999999664

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.51  E-value=2.1e-13  Score=129.08  Aligned_cols=117  Identities=15%  Similarity=0.166  Sum_probs=76.1

Q ss_pred             eEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCce------------eeeEEE---E---EEeeeccc-
Q 019077          198 EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT------------IFLEMV---A---FRHVHLVA-  258 (346)
Q Consensus       198 ~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v------------~~~~ll---~---~~~~~~~~-  258 (346)
                      +|||++|..    .|.|.+|||+||+||++.+||+||++||||+.+            ....++   +   +......+ 
T Consensus       140 ~vLl~~r~~----~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr  215 (292)
T 1q33_A          140 QFVAIKRKD----CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPR  215 (292)
T ss_dssp             EEEEEECTT----TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTT
T ss_pred             EEEEEEecC----CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCC
Confidence            699999873    489999999999999999999999999999983            111111   1   11111111 


Q ss_pred             c----ceeEEEEEEEEecC---CccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCCCC
Q 019077          259 F----EKSDLLFVCMLKPL---SFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFN  323 (346)
Q Consensus       259 ~----~~~~~~fv~~l~~~---~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~~~  323 (346)
                      .    ....+.|.+.....   .......++|+.+++|++++++.++...+     +.+++.++++++..|.
T Consensus       216 ~~d~~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L~~~h-----~~il~~~~~~~~a~~~  282 (292)
T 1q33_A          216 NTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASH-----SQFIKLVAEKRDAHWS  282 (292)
T ss_dssp             CCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCSTTH-----HHHHHHHHHHHTCCCC
T ss_pred             CCcccEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCcccCHhH-----HHHHHHHHHHhcCccc
Confidence            0    11233444443211   11112346789999999999998764433     6788888877766544

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.45  E-value=1.3e-12  Score=124.05  Aligned_cols=176  Identities=15%  Similarity=0.128  Sum_probs=107.3

Q ss_pred             cEEeCCCCCCCChHHHHHHHHHHhHHhHhcCceeEEEEccccccCchHHHHhcccceecCC--CceeEeeccccCCCCCC
Q 019077          101 GVIINPENLPSSANAFVSALRASLSNWKLKGKKGVWLKILSKQADLVPIAIQEGFSYHHAE--PGYVMLTYWIPVEPCML  178 (346)
Q Consensus       101 g~~v~~~~~~~~~~~f~~~l~~sl~~w~~~~~r~vw~~l~~~~~~l~~~a~~~gf~~H~~~--~~~~~l~~wl~~~~~~l  178 (346)
                      +|++..  ...+.+.-...|++.+..|+.+|.-.=|      ..        +.|......  .....+.      ....
T Consensus        54 ~v~l~~--~~~~~~~rt~~~~~~~~~~~~~g~~~gw------r~--------E~~~V~~~~~~~~~~~~e------R~~~  111 (300)
T 3dup_A           54 AVLLSA--SLRTPQSRTRAVADVVDRLADEGVVPAP------RG--------ELYRVNQSWGEPTLMLLD------RAVV  111 (300)
T ss_dssp             EEEECT--TCCSHHHHHHHHHHHHHHHHHTTSSCCC------CS--------CEEEECSSTTSCCCEEEE------GGGT
T ss_pred             EEEEec--CCCCHHHHHHHHHHHHHHHHHcCCCCcc------cc--------ccEEeecCCCCeeeEEEE------hhhc
Confidence            455543  2347788889999999999998731101      11        111111111  0111111      1111


Q ss_pred             CCCCccceEEEEEEEeCCC---eEEEEeec-CCCCCCCce-eeeeEEecCCCCHHHHHHHHHHHHhCCceeee---EEEE
Q 019077          179 PGSPSHQIGVGGFVMNDKR---EVLVVKEK-CPRSCSGMW-KIPTGYINKSEDLFSGAVREVKEETGVDTIFL---EMVA  250 (346)
Q Consensus       179 p~~~~~~v~V~avVin~~~---~VLLvrr~-~~~~~~g~W-~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~---~ll~  250 (346)
                      +...-...+|.+.+++.++   ++|+.||. .+..++|.| .+++|++++||++.+||+||+.||+||.+...   ..++
T Consensus       112 ~~~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g  191 (300)
T 3dup_A          112 PTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVG  191 (300)
T ss_dssp             GGGTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEE
T ss_pred             cccceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccc
Confidence            1222334567777777665   99999998 667799999 59999999999999999999999999987532   2222


Q ss_pred             EE-eeeccccc-eeEEEEEEEEe-cCCccccCCccccceEEEEchhhhhcC
Q 019077          251 FR-HVHLVAFE-KSDLLFVCMLK-PLSFEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       251 ~~-~~~~~~~~-~~~~~fv~~l~-~~~~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      .. +......+ ...+.|++.+. +.+..+.++++|+.+++|++++|+.++
T Consensus       192 ~i~y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~v~~~El~~~  242 (300)
T 3dup_A          192 AITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEA  242 (300)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEEEEHHHHHHH
T ss_pred             eEEEEEecCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEEECHHHHHHH
Confidence            11 11111111 12234444333 123344668899999999999998764

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.35  E-value=9.3e-12  Score=114.09  Aligned_cols=60  Identities=32%  Similarity=0.369  Sum_probs=47.9

Q ss_pred             ceEEEEEEEeC--CC--eEEEEeec-CCCCCCCceeeeeEEecCCCC--------------------HHHHHHHHHHHHh
Q 019077          185 QIGVGGFVMND--KR--EVLVVKEK-CPRSCSGMWKIPTGYINKSED--------------------LFSGAVREVKEET  239 (346)
Q Consensus       185 ~v~V~avVin~--~~--~VLLvrr~-~~~~~~g~W~lPGG~ve~GEs--------------------~~eAA~REv~EET  239 (346)
                      +.++.++++++  ++  +|||++|. .....+|.|.||||+||+||+                    +..||+||++|||
T Consensus         8 r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~   87 (232)
T 3qsj_A            8 RKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEI   87 (232)
T ss_dssp             EEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHh
Confidence            45556666653  23  89999998 334468999999999999987                    5899999999999


Q ss_pred             CCcee
Q 019077          240 GVDTI  244 (346)
Q Consensus       240 Gl~v~  244 (346)
                      ||.+.
T Consensus        88 Gl~l~   92 (232)
T 3qsj_A           88 GWLLA   92 (232)
T ss_dssp             SCCCS
T ss_pred             Cceec
Confidence            99763

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.30  E-value=1.4e-11  Score=118.00  Aligned_cols=119  Identities=8%  Similarity=0.140  Sum_probs=85.5

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHh-CCceeeeEEEEEEeeecccccee
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEET-GVDTIFLEMVAFRHVHLVAFEKS  262 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EET-Gl~v~~~~ll~~~~~~~~~~~~~  262 (346)
                      +.+.|++++. .+|+|||+  .    ..| |.||||.++.++  .++|+||++||| |++++...++++++...  .+..
T Consensus       182 p~~~vgaii~-~~g~vLL~--~----~~G-W~LPG~~~~~~~--~~~a~RE~~EEttGl~v~~~~L~~v~~~~~--~~~~  249 (321)
T 3rh7_A          182 GEIRLGAVLE-QQGAVFLA--G----NET-LSLPNCTVEGGD--PARTLAAYLEQLTGLNVTIGFLYSVYEDKS--DGRQ  249 (321)
T ss_dssp             SCEEEEEEEE-SSSCEEEB--C----SSE-EBCCEEEESSSC--HHHHHHHHHHHHHSSCEEEEEEEEEEECTT--TCCE
T ss_pred             CcceEEEEEE-ECCEEEEe--e----CCC-ccCCcccCCCCh--hHHHHHHHHHHhcCCEEeeceEEEEEEcCC--CceE
Confidence            3466766655 46899999  2    357 999988665444  469999999997 99999999998876543  2345


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCCCCCc
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFNGF  325 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~~~g~  325 (346)
                      .++|.|.+.  ++.       ..+++|+++++++.+.+..  ...+.+++.+++..+...-|+
T Consensus       250 ~i~f~~~~~--~g~-------~~e~~~f~~~elp~~~~~~--~~~~~~L~~y~~e~~~g~f~i  301 (321)
T 3rh7_A          250 NIVYHALAS--DGA-------PRQGRFLRPAELAAAKFSS--SATADIINRFVLESSIGNFGI  301 (321)
T ss_dssp             EEEEEEEEC--SSC-------CSSSEEECHHHHTTCEESS--HHHHHHHHHHHHTTSCSSCC-
T ss_pred             EEEEEEEeC--CCC-------eeeeEEECHHHCCCcccCC--HHHHHHHHHHHHHhhcCCCCc
Confidence            677888763  222       2778999999999886542  256788888887766653343

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.29  E-value=1.5e-12  Score=118.17  Aligned_cols=92  Identities=21%  Similarity=0.282  Sum_probs=63.7

Q ss_pred             eEEEEeecCCCCCCCceeeeeEEecCCC-CHHHHHHHHHHHHhCCceeee--EEEEEEeeecc-ccceeEEEEEEEEecC
Q 019077          198 EVLVVKEKCPRSCSGMWKIPTGYINKSE-DLFSGAVREVKEETGVDTIFL--EMVAFRHVHLV-AFEKSDLLFVCMLKPL  273 (346)
Q Consensus       198 ~VLLvrr~~~~~~~g~W~lPGG~ve~GE-s~~eAA~REv~EETGl~v~~~--~ll~~~~~~~~-~~~~~~~~fv~~l~~~  273 (346)
                      ++||+.|.     .+.|.+|||++|+|| ++++||+||++||||+++...  ..+........ ......++|++.+.. 
T Consensus        66 ~~ll~~r~-----~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~-  139 (217)
T 2xsq_A           66 AILMQMRF-----DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTL-  139 (217)
T ss_dssp             EEEEEEET-----TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCH-
T ss_pred             cEEEEEcc-----CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEecc-
Confidence            56666554     478999999999999 999999999999999998742  11222212211 224456677776532 


Q ss_pred             Cccc----------cCCccccceEEEEchhhhh
Q 019077          274 SFEI----------TIYEKEIQAAKWMPLEEFV  296 (346)
Q Consensus       274 ~~~i----------~~~~~Ei~~~~Wv~~eel~  296 (346)
                       ..+          ..++.|..++.|+|++++.
T Consensus       140 -~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A          140 -EELLAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             -HHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             -ccceecccccccccccCCceeeEEEEEHHHhh
Confidence             222          2235688999999999986

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.84  E-value=2e-09  Score=95.11  Aligned_cols=90  Identities=16%  Similarity=0.149  Sum_probs=58.6

Q ss_pred             EEEEeecCCCCCCCceeeeeEEecCCC-CHHHHHHHHHHHHhCC-ceeeeEEEEEEeeeccccceeEEEEEEEEecCCcc
Q 019077          199 VLVVKEKCPRSCSGMWKIPTGYINKSE-DLFSGAVREVKEETGV-DTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFE  276 (346)
Q Consensus       199 VLLvrr~~~~~~~g~W~lPGG~ve~GE-s~~eAA~REv~EETGl-~v~~~~ll~~~~~~~~~~~~~~~~fv~~l~~~~~~  276 (346)
                      |||+.|.     .|.|+||||+||+|| ++++|+.||+.||+|+ .+....++...... ++......+|.|.+.  .++
T Consensus        46 iLmQ~R~-----~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~-yp~~V~LHfY~crl~--~Ge  117 (214)
T 3kvh_A           46 VLMQMRF-----DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTE-GPHRVVAHLYARQLT--LEQ  117 (214)
T ss_dssp             EEEEEET-----TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC-----CEEEEEEEEECC--HHH
T ss_pred             EEEeeee-----CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEecc-CCCEEEEEEEEEEee--CCc
Confidence            6666664     589999999999999 9999999999999997 56666666533222 222445567777663  222


Q ss_pred             c--------cCC--ccccceEEEEchhhhh
Q 019077          277 I--------TIY--EKEIQAAKWMPLEEFV  296 (346)
Q Consensus       277 i--------~~~--~~Ei~~~~Wv~~eel~  296 (346)
                      +        ...  ..|+....-||+-.+.
T Consensus       118 ~~~lE~~A~~A~d~G~EvlGlvRVPlytl~  147 (214)
T 3kvh_A          118 LHAVEISAVHSRDHGLEVLGLVRVPLYTQK  147 (214)
T ss_dssp             HHHHHHHHHTSTTBTTTEEEEEEECCCBCT
T ss_pred             cchhhhcccCCcccCceecceEEeeeEEec
Confidence            1        111  3467777778775543

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=98.78  E-value=1.9e-08  Score=89.63  Aligned_cols=62  Identities=24%  Similarity=0.383  Sum_probs=47.8

Q ss_pred             eEEEEEEE-eCC--CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhC------CceeeeEEEEEE
Q 019077          186 IGVGGFVM-NDK--REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETG------VDTIFLEMVAFR  252 (346)
Q Consensus       186 v~V~avVi-n~~--~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETG------l~v~~~~ll~~~  252 (346)
                      .+|.++++ ++.  .+|||+|+.     .+.|.||||.+|+||+.++|++||+.||+|      .+.+..++++..
T Consensus        59 ~sV~avil~~~~~~phVLLlq~~-----~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~lg~w  129 (208)
T 3bho_A           59 RTVEGVLIVHEHRLPHVLLLQLG-----TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNW  129 (208)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEE-----TTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEEEEE
T ss_pred             eEEEEEEEEcCCCCcEEEEEEcC-----CCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheEEEE
Confidence            45555554 433  379999975     358999999999999999999999999999      556667777753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	346
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	4e-19
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	2e-17
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	7e-16
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	1e-13
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	1e-13
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	3e-13
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	3e-13
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	5e-13
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	6e-13
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	4e-12
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	8e-12
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	1e-10
d1puna_	129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	2e-10
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	7e-10
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	4e-09
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	5e-09
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	6e-09
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	6e-09
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	7e-09
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	1e-08
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	1e-08
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	1e-06
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	2e-06
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	3e-06
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	4e-05
d1rrqa2	127	d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-	2e-04

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 81.0 bits (199), Expect = 4e-19
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 4/136 (2%)

Query: 182 PSHQIGVGGFVMNDKREVLVVKEKCP---RSCSGMWKIPTGYINKSEDLFSGAVREVKEE 238
           P      G  ++N++ ++L+V+EK        +G+W IP+G +   E+    AVRE  EE
Sbjct: 9   PVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEE 68

Query: 239 TGVDTIFLEMVA-FRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
           TG+    ++ +  +             +++   +P       +  EI  A ++  E+F +
Sbjct: 69  TGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQ 128

Query: 298 QPFYLEDDMSRKVIDI 313
                +  M +  +  
Sbjct: 129 LYAAGQIRMYQTKLFY 144

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 75.0 bits (184), Expect = 2e-17
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 11/132 (8%)

Query: 185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
           ++G GG V N KREVL+++++      G W  P G+    E L   AVREV EETGV   
Sbjct: 2   ELGAGGVVFNAKREVLLLRDR-----MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE 56

Query: 245 FLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLED 304
            L  +           + ++ +  M    +  +   E+ +  A W   EE      + ED
Sbjct: 57  VLLPLYPTRYVNPKGVEREVHWFLMRGEGAPRL---EEGMTGAGWFSPEEARALLAFPED 113

Query: 305 DMSRKVIDICIK 316
                ++++ ++
Sbjct: 114 ---LGLLEVALE 122

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 71.7 bits (175), Expect = 7e-16
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
           + V   +  D +  L+V+E  PR  +     P G++   E +     REV EETG   + 
Sbjct: 4   VTVAAVIEQDDK-YLLVEEI-PRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLP 61

Query: 246 LEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIY-EKEIQAAKWMPLEEFVKQPFYLED 304
             +    H    +   + L F    + +SF+     +  I  A W  ++E   +      
Sbjct: 62  EVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRT 121

Query: 305 DMSRKVID 312
            +  + I+
Sbjct: 122 PLVMQCIE 129

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (160), Expect = 1e-13
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 182 PSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGV 241
            + ++     V+  +R VL+  +K     +G W    G + + E +  GA RE++EE+G+
Sbjct: 2   GASRLYTLVLVLQPQR-VLLGMKK-RGFGAGRWNGFGGKVQEGETIEDGARRELQEESGL 59

Query: 242 DTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301
               L  V    +      + +L+ V +    S + T  E +     W  L++   +  +
Sbjct: 60  TVDALHKVG--QIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMW 117

Query: 302 LED 304
            +D
Sbjct: 118 PDD 120

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 194 NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH 253
           +++  +LV   + P      W +P G +   E+    AVREV EE GV      +V    
Sbjct: 23  SEEEVLLVSSSRHP----DRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFE 78

Query: 254 VHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY 301
                 +    ++V ++  +  +        +  +W  +E+ +K   Y
Sbjct: 79  NQ--ERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQY 124

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 64.1 bits (155), Expect = 3e-13
 Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 12/133 (9%)

Query: 184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT 243
            +      V   +   +V+     ++ +G + +P G I  +E       REV EE G+  
Sbjct: 16  TRYAAYIIVSKPENNTMVLV----QAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISV 71

Query: 244 IFLEMVAFRHVHLVAFEKSD----LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP 299
                +     +  +  +        +  +           E       W+  EE V+  
Sbjct: 72  EIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLE-RTNTLHWVAPEEAVR-- 128

Query: 300 FYLEDDMSRKVID 312
             L+    R  ++
Sbjct: 129 -LLKRGSHRWAVE 140

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 64.4 bits (156), Expect = 3e-13
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 4/108 (3%)

Query: 188 VGGFVMNDKRE-VLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL 246
            G  +++   +  ++VK          W  P G I+K E     A+REV EETG D    
Sbjct: 5   RGAIMLDMSMQQCVLVKGWKAS---SGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSR 61

Query: 247 EMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEE 294
                     +  +   L  +  +   +   +   KEI   +W  L +
Sbjct: 62  INPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMD 109

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 63.7 bits (154), Expect = 5e-13
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 9/123 (7%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD--- 242
           + +   V N + E L+ K    R   G W +P G + K E L +   R    E G+    
Sbjct: 19  VSLDFIVENSRGEFLLGKRT-NRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPI 77

Query: 243 TIFLEMVAFRHVHLVAFEKSD-----LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
           T       ++H +   F  +D     ++     +    E+ + +++    +W+  +  + 
Sbjct: 78  TAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLA 137

Query: 298 QPF 300
              
Sbjct: 138 SDN 140

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 63.4 bits (153), Expect = 6e-13
 Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 18/144 (12%)

Query: 186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
           I   G ++ + + VL+VK        G++  P G++  +E       RE +EETG+    
Sbjct: 2   IVTSGVLVENGK-VLLVK----HKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEP 56

Query: 246 LEMVAFRHVHLVAFEKSDLLFVCML----------KPLSFEITIYEKEIQAAKWMPLEEF 295
           +                 L+ +  +            L + +     +++  +W+ + E 
Sbjct: 57  IGFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREI 116

Query: 296 VKQPFYLEDDMSRKVIDICIKAYD 319
            +   +      RKV+ + +    
Sbjct: 117 DRIETFPNV---RKVVSLALSTLY 137

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 60.5 bits (146), Expect = 4e-12
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 192 VMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF 251
            +     +L+ +    R  +G+  +  G++   E L     REV EE+G+    L  V  
Sbjct: 9   AIRRDDSILLAQHT--RHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTS 66

Query: 252 RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVI 311
           +           L+   M +  S +I I  KE+  A W   ++    P      ++R++I
Sbjct: 67  QPWP----FPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPP--PGTVARRLI 120

Query: 312 D 312
           +
Sbjct: 121 E 121

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 8e-12
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 11/129 (8%)

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE 247
           +   V N+  E L+++          W  P G++   ED    A+R  +EE G++   L 
Sbjct: 20  LIPKVDNNAIEFLLLQA---SDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLT 76

Query: 248 MVAFRHVHLVAF----EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE 303
           ++      L        K+ + ++  +K    EI +   E QA +W+ LEE  +   + E
Sbjct: 77  IIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRL-SHEHQAYRWLGLEEACQLAQFKE 135

Query: 304 DDMSRKVID 312
               +  + 
Sbjct: 136 M---KAALQ 141

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 18/137 (13%), Positives = 43/137 (31%), Gaps = 8/137 (5%)

Query: 194 NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH 253
            + + V++       +    +  P G++   E      +RE+ EETG+    ++      
Sbjct: 18  LETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT---IQNPQLVG 74

Query: 254 VHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDI 313
           +     +      V   K   F  T+   E     W+  ++        +      ++++
Sbjct: 75  IKNWPLDTGGRYIVICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAYDM---LPLMEM 131

Query: 314 CIKAYDDRFNGFIAHEL 330
                 D+   F     
Sbjct: 132 MEA--PDKSEFFYPRRT 146

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 4/113 (3%)

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE 247
             G + N+  E+ + +       +   + P G I   E      VRE++EE G+      
Sbjct: 7   AVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFS 66

Query: 248 MVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
           +             +   ++       +E   + KE Q  +WM L       F
Sbjct: 67  LFEKLEYEFPDRHITLWFWLVE----RWEGEPWGKEGQPGEWMSLVGLNADDF 115

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 54.9 bits (131), Expect = 7e-10
 Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 5/115 (4%)

Query: 188 VGGFVMNDKREVLVVK--EKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
              ++ N K ++LV +                 G+    E      +R  + E GV+   
Sbjct: 5   FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 64

Query: 246 LEMVAFRHVHLVAFE---KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
            E +     +          + +        +  + I + E+   +W  L + + 
Sbjct: 65  PESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLH 119

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (126), Expect = 4e-09
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 5/115 (4%)

Query: 187 GVGGFVMNDKREVLVVK--EKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTI 244
                V +   ++LV +  E        +     G +   E L   A RE +EE G+  +
Sbjct: 32  ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGV 91

Query: 245 FLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP 299
                   +           LF C+         + E E+    W+  EE   + 
Sbjct: 92  PFAEHGQFYFEDKNCRVWGALFSCVSHG---PFALQEDEVSEVCWLTPEEITARC 143

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 52.4 bits (125), Expect = 5e-09
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDT 243
           H+  V    + + R +L V++  P       +IP G I   ED    A RE+ E+TG+  
Sbjct: 23  HKPAVAVIALREGR-MLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSG 81

Query: 244 IFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
               + ++        EK+ +     LK    E    E E     WM  EE ++
Sbjct: 82  DLTYLFSYFVSPGFTDEKTHVFLAENLKE--VEAHPDEDEAIEVVWMRPEEALE 133

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 52.5 bits (125), Expect = 6e-09
 Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 24/147 (16%)

Query: 187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL 246
            VG  +MN+ +++              W++P G I++ ED  + A+RE++EETGV +  +
Sbjct: 16  NVGICLMNNDKKIFAASRLDIP---DAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEV 72

Query: 247 EMVAFRHVHLVAFEK----------------SDLLFVCMLKPLSFEITIYEK-----EIQ 285
                  +      K                +   F+        EI +        E  
Sbjct: 73  IAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFG 132

Query: 286 AAKWMPLEEFVKQPFYLEDDMSRKVID 312
              W+  E+ +      +  + ++V+ 
Sbjct: 133 EWSWVTPEQLIDLTVEFKKPVYKEVLS 159

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 52.9 bits (126), Expect = 6e-09
 Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 1/130 (0%)

Query: 191 FVMNDKREVLVVK-EKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMV 249
                   VL+        +  G    P G ++  E     A+RE +EE  +D   + ++
Sbjct: 39  LTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLL 98

Query: 250 AFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRK 309
                            +  + P + +      E+       L E    P   E      
Sbjct: 99  GELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLVRERRTLPD 158

Query: 310 VIDICIKAYD 319
             ++ +  Y 
Sbjct: 159 GTEVPLYRYP 168

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 52.9 bits (126), Expect = 7e-09
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 7/138 (5%)

Query: 174 EPCMLPGSPSHQIGVGGFVM-----NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLF 228
               LP      + V   ++      D+ +VL+++ K        W +P G++N++E   
Sbjct: 26  HQQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGH-PFRNSWALPGGFVNRNESTE 84

Query: 229 SGAVREVKEETGVDTIFLEMVAFRHVHLVA-FEKSDLLFVCMLKPLSFEITIYEKEIQAA 287
              +RE KEETGV      +             +  ++ V  L  +  E  I   + +  
Sbjct: 85  DSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEV 144

Query: 288 KWMPLEEFVKQPFYLEDD 305
            W  LE   +      +D
Sbjct: 145 HWFNLERHGQHITLSHED 162

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.1 bits (121), Expect = 1e-08
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 12/134 (8%)

Query: 194 NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRH 253
             K E L+++   P      W  P G+++  ED +  A+RE KEE  +    L +    H
Sbjct: 14  AGKIEFLLLQASYPP---HHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCH 70

Query: 254 VHLV--AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVI 311
             L   A  K   +   + K  + +      E Q  KW  LE+ +K   Y E      + 
Sbjct: 71  ETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEM---GSL- 126

Query: 312 DICIKAYDDRFNGF 325
              ++ +     GF
Sbjct: 127 ---LRKFSAFLAGF 137

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 3/111 (2%)

Query: 188 VGGFVMNDKREVLVVK--EKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIF 245
           V  F+ N + ++ + +         + +     G +   E       RE +EE  V+   
Sbjct: 31  VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDA 90

Query: 246 LEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFV 296
           L               S  + V  L+           +I   +W+  E  +
Sbjct: 91  LSWRPLASFSPFQTTLSSFMCVYELRS-DATPIFNPNDISGGEWLTPEHLL 140

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 4/122 (3%)

Query: 182 PSHQIGVGGFVM---NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEE 238
           P+  +G+   +      +  +L++K        G W +  G++ K E +   A R + E 
Sbjct: 7   PTFYLGIDCIIFGFNEGEISLLLLKRNFE-PAMGEWSLMGGFVQKDESVDDAAKRVLAEL 65

Query: 239 TGVDTIFLEMVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ 298
           TG++ +++E V           +  +           E      +   A W+ + E    
Sbjct: 66  TGLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPAL 125

Query: 299 PF 300
            F
Sbjct: 126 IF 127

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 25/152 (16%), Positives = 50/152 (32%), Gaps = 34/152 (22%)

Query: 156 SYHHAEPGYVMLTYWIPVEPCMLPGSPSHQIGVGGFVMNDKREVLVVKEKCPRSCSGMWK 215
            Y HA   + +L              PS         +  +R +L++     R   G   
Sbjct: 18  GYKHA--CHALLHA------------PSQAKLFD--RVPIRRVLLMMM----RF-DGRLG 56

Query: 216 IPTGYINKSED-LFSGAVREVKEETGVDTIFLEMVAF------------RHVHLVAFEKS 262
            P G+++  +  L  G  RE++EE G     +E+               + V     ++ 
Sbjct: 57  FPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKEL 116

Query: 263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEE 294
            L  +  ++  +     +  E+     +PL  
Sbjct: 117 KLEEIERIEAEAVNAKDHGLEVMGLIRVPLYT 148

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 198 EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV 257
           + + +K    R   G W IP G ++  E + +   RE  EE                  +
Sbjct: 140 QFVAIK----RKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKL 195

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 1/106 (0%)

Query: 192 VMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF 251
           V      +++++E    + S       G I+  E ++  A RE+KEE G           
Sbjct: 54  VPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFG-ANDLTFLK 112

Query: 252 RHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK 297
           +     ++  S +  V         +   E E       PL   + 
Sbjct: 113 KLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMD 158

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 8/113 (7%)

Query: 188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE 247
               + +D+  VL+ K       + +W+ P+   + ++       + V E+ G+     E
Sbjct: 7   AVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGK-EKLEQMVGEQYGLQVELTE 65

Query: 248 MVAFRHVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPF 300
            +               +F          +       +  +  P +E     F
Sbjct: 66  PIVSFEHAFSHLVWQLTVFPG-------RLVHGGPVEEPYRLAPEDELKAYAF 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.88
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.87
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.85
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.85
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.84
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.83
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.82
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.82
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.81
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.8
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.79
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.79
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.78
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.78
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.78
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.78
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.77
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.76
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.76
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.76
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.74
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.74
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.72
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.72
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.7
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.6
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.48
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.46
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.39
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.26

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=7.2e-22  Score=163.72  Aligned_cols=127  Identities=19%  Similarity=0.247  Sum_probs=99.3

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL  265 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~  265 (346)
                      ++|.++|.+ ++++||+++++.  .+|.|.+|||++|+|||+++||+||++||||+++.....++......  .....++
T Consensus         4 paViv~i~~-~~~vLL~~~~~~--~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~--~~~~~~~   78 (131)
T d1vk6a2           4 PCIIVAIRR-DDSILLAQHTRH--RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF--PQSLMTA   78 (131)
T ss_dssp             EEEEEEEEE-TTEEEEEEETTT--CSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEET--TEEEEEE
T ss_pred             cEEEEEEEe-CCEEEEEEeccC--CCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEeccCc--CceEEEE
Confidence            566555554 579999998754  35899999999999999999999999999999998888777543332  2345566


Q ss_pred             EEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCC
Q 019077          266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDR  321 (346)
Q Consensus       266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~  321 (346)
                      |++...  .+++.+++.|+.+++|++++|++.++...  .+.+.+|+.+++..+..
T Consensus        79 f~~~~~--~~~~~~~~~E~~~~~W~~~~el~~l~~~~--~i~r~li~~~l~~~r~~  130 (131)
T d1vk6a2          79 FMAEYD--SGDIVIDPKELLEANWYRYDDLPLLPPPG--TVARRLIEDTVAMCRAE  130 (131)
T ss_dssp             EEEEEE--ECCCCCCTTTEEEEEEEETTSCCSCCCTT--SHHHHHHHHHHHHHHHC
T ss_pred             EEEEEc--CCcccCCCccEEEEEEEcHHHHhhCCCCh--HHHHHHHHHHHHHHHhc
Confidence            666653  45677788999999999999999887654  36788888888877654

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.87  E-value=2.6e-22  Score=169.92  Aligned_cols=135  Identities=16%  Similarity=0.305  Sum_probs=101.7

Q ss_pred             CCCCccceEEEEEEEe--CC-CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeee
Q 019077          179 PGSPSHQIGVGGFVMN--DK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVH  255 (346)
Q Consensus       179 p~~~~~~v~V~avVin--~~-~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~  255 (346)
                      ..+|...++|++||+.  ++ .+|||++|...+ +.|.|.+|||++++||++++||+||++||||+++....+++.+...
T Consensus         4 ~~~p~~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p-~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~   82 (147)
T d2fb1a2           4 SSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEP-AMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI   82 (147)
T ss_dssp             TTSCCEEEEEEEEEEEEETTEEEEEEEECSSSS-STTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred             CCCCCcceEEEEEEEEEeCCcCEEEEEEccCCC-CCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEecCC
Confidence            3567788999998873  33 589999988543 5799999999999999999999999999999999888888765433


Q ss_pred             cccc--ceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCC
Q 019077          256 LVAF--EKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDR  321 (346)
Q Consensus       256 ~~~~--~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~  321 (346)
                      ....  ....++|+|.+..  .......+|..+++|++++++++++|+|     .+|++.++++++++
T Consensus        83 ~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~~~~~W~~~~~lp~lafDH-----~~ii~~a~~~lr~k  143 (147)
T d2fb1a2          83 DRDPGERVVSIAYYALINI--NEYDRELVQKHNAYWVNINELPALIFDH-----PEMVDKAREMMKQK  143 (147)
T ss_dssp             TSSSSSCEEEEEEEEECCT--TSSCHHHHHHTTEEEEETTSCCCBSTTH-----HHHHHHHHHHHHHH
T ss_pred             cccCCCceEEEEEEEEecC--CcccCCCcchhheEEecHHhchhcccCH-----HHHHHHHHHHHHHH
Confidence            3221  2344566666543  2333445678899999999999998865     56777777776643

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.85  E-value=4e-21  Score=160.67  Aligned_cols=128  Identities=17%  Similarity=0.211  Sum_probs=93.4

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL  264 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~  264 (346)
                      .++|+++|. .++++||++|...+ ..+.|.+|||++|.||++.+||+||++||||+++....+++.........+...+
T Consensus         3 ~v~va~ii~-~~~k~Llv~r~~~~-~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   80 (146)
T d2b0va1           3 NVTVAAVIE-QDDKYLLVEEIPRG-TAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYL   80 (146)
T ss_dssp             EEEEEEECE-ETTEEEEEEECSSS-SCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEE
T ss_pred             eEEEEEEEE-eCCEEEEEEEecCC-CCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCCeEEE
Confidence            466766655 46899999998554 5789999999999999999999999999999999988888776655544443333


Q ss_pred             --EEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077          265 --LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI  315 (346)
Q Consensus       265 --~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l  315 (346)
                        +|.+...... .....++|+.+++|++++|+.+++..+....+.++++.++
T Consensus        81 ~~~~~~~~~~~~-~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~v~~~l~~y~  132 (146)
T d2b0va1          81 RFTFSGQVVSFD-PDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYH  132 (146)
T ss_dssp             EEEEEEEEEEEC-TTSCCCTTEEEEEEEEHHHHHHTGGGBSSTHHHHHHHHHH
T ss_pred             EEEEEEEeecCC-CCCCCCcceeEEEEeeHHHHhhCccccCCHHHHHHHHHHH
Confidence              3444433222 2233467899999999999998876554445555665554

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=5.3e-21  Score=157.07  Aligned_cols=122  Identities=28%  Similarity=0.395  Sum_probs=91.6

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc-cceeE
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA-FEKSD  263 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~-~~~~~  263 (346)
                      .++|+++|+|++++|||++++     .|.|.+|||++|+|||+.+||+||++||||+++.....++........ .....
T Consensus         2 ~v~agavv~~~~~~vLl~~~~-----~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~   76 (126)
T d1vcda1           2 ELGAGGVVFNAKREVLLLRDR-----MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREV   76 (126)
T ss_dssp             EEEEEEEEECTTSCEEEEECT-----TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEE
T ss_pred             EEEEEEEEEECCCEEEEEEcC-----CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCCeEEEE
Confidence            478999999999999999875     378999999999999999999999999999999887777654333222 22333


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHh
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAY  318 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~  318 (346)
                      ++|++...   .... .++|+.+++|++++++.++...+   ..+.+++.+++++
T Consensus        77 ~~~~~~~~---~~~~-~~~e~~~~~W~~~~e~~~~~~~~---~~~~il~~~~~~l  124 (126)
T d1vcda1          77 HWFLMRGE---GAPR-LEEGMTGAGWFSPEEARALLAFP---EDLGLLEVALERL  124 (126)
T ss_dssp             EEEEEEEE---SCCC-CCTTCCEEEEECHHHHHHHBCSH---HHHHHHHHHHHHS
T ss_pred             EEEEEEEc---CCCC-CCccceEEEEEEHHHHhhccCCh---HHHHHHHHHHHhC
Confidence            45555443   2222 25688899999999999875443   3466777777654

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.84  E-value=2.4e-20  Score=158.03  Aligned_cols=120  Identities=23%  Similarity=0.341  Sum_probs=87.8

Q ss_pred             CccceEEEEEEEeCCCeEEEEeecCC---CCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec-c
Q 019077          182 PSHQIGVGGFVMNDKREVLVVKEKCP---RSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL-V  257 (346)
Q Consensus       182 ~~~~v~V~avVin~~~~VLLvrr~~~---~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~-~  257 (346)
                      |.+..+++++++|++++|||++|+..   ....|.|.+|||++|+||++.+||+||++||||+++...++++...... .
T Consensus         9 p~~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~~~~   88 (158)
T d1sjya_           9 PVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPD   88 (158)
T ss_dssp             CCCEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTT
T ss_pred             CCceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEEEEEECCC
Confidence            44456788888888899999999732   2356899999999999999999999999999999999888887554332 2


Q ss_pred             ccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          258 AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       258 ~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      .......+|++...........+++|+.+++|++++++.++...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~  132 (158)
T d1sjya_          89 GVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAA  132 (158)
T ss_dssp             SCEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHHHHHHT
T ss_pred             CCEEEEEEEEEEEcCCcccCCCCCcceEEEEEEEHHHHhhhhhC
Confidence            12223344555443322222334579999999999999886543

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.9e-21  Score=158.83  Aligned_cols=113  Identities=19%  Similarity=0.300  Sum_probs=86.2

Q ss_pred             EEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEEE
Q 019077          189 GGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFVC  268 (346)
Q Consensus       189 ~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv~  268 (346)
                      +++|++++++|||+||......+|.|.||||++|.||++.+||+||++||||+++....++.........+.....+|.|
T Consensus         8 v~ii~~~~~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (129)
T d1puna_           8 VGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLV   87 (129)
T ss_dssp             EEECBCTTSCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEeecccccceeEEEEEE
Confidence            35667788999999998555678999999999999999999999999999999998877766554443333333333433


Q ss_pred             EEecCCccccCCccccceEEEEchhhhhcCCCCCccH
Q 019077          269 MLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDD  305 (346)
Q Consensus       269 ~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~  305 (346)
                        ...+++  +...|+.+++|++++++.++++++.+.
T Consensus        88 --~~~~~~--~~~~E~~~~~W~~~~el~~~~~~~~~~  120 (129)
T d1puna_          88 --ERWEGE--PWGKEGQPGEWMSLVGLNADDFPPANE  120 (129)
T ss_dssp             --CCCSSC--CCTTSSSCCEEECGGGCCTTTSCGGGH
T ss_pred             --eeccCc--CCCCccceEEEEEHHHcccCCCCcchH
Confidence              323333  345688899999999999999887553

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.82  E-value=2.8e-20  Score=159.67  Aligned_cols=126  Identities=20%  Similarity=0.296  Sum_probs=87.7

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEE---eee-----
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFR---HVH-----  255 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~---~~~-----  255 (346)
                      .+.+|+++|+|++++|||++|...   +|.|.+|||+||.||++++||+||++||||+++.........   ...     
T Consensus        13 yR~~Vg~vI~n~~~~vLL~kR~~~---~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   89 (165)
T d1jkna_          13 YRRNVGICLMNNDKKIFAASRLDI---PDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVR   89 (165)
T ss_dssp             EEEEEEEEEECTTSCEEEEEESSS---TTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECCHHHH
T ss_pred             ccccEEEEEEeCCCEEEEEEEcCC---CCcccCccceEcCCCChhHHHHHHHHHhhccccccccccccccccccccceee
Confidence            578999999999999999999843   489999999999999999999999999999998765543210   000     


Q ss_pred             --------ccccceeEEEEEEEEecCCccccC-----CccccceEEEEchhhhhcCCCCCccHHHHHHHH
Q 019077          256 --------LVAFEKSDLLFVCMLKPLSFEITI-----YEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVID  312 (346)
Q Consensus       256 --------~~~~~~~~~~fv~~l~~~~~~i~~-----~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~  312 (346)
                              ..........|++.+......+.+     ...|+.+++|++++++++...+....+++++++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~~i~~fk~~v~~~~l~  159 (165)
T d1jkna_          90 EKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLS  159 (165)
T ss_dssp             HHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHHHSCGGGHHHHHHHHH
T ss_pred             ceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHHhcchhhHHHHHHHHH
Confidence                    001112334555555433333332     234899999999999998754433234444443

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=8.7e-20  Score=155.11  Aligned_cols=117  Identities=15%  Similarity=0.220  Sum_probs=85.1

Q ss_pred             ceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeee--EEEEEEee-ecc----
Q 019077          185 QIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFL--EMVAFRHV-HLV----  257 (346)
Q Consensus       185 ~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~--~ll~~~~~-~~~----  257 (346)
                      .++|+++|.|++++|||++|.+.+ ++|.|.+|||++++||++.+||+||++||||+++...  ..++.... ...    
T Consensus        18 ~~~v~~vi~~~~~~vLL~kR~~~~-~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   96 (160)
T d1ryaa_          18 LVSLDFIVENSRGEFLLGKRTNRP-AQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSG   96 (160)
T ss_dssp             EEEEEEEEECTTSCEEEEEECSSS-STTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTB
T ss_pred             EEEEEEEEEeCCCeEEEEEeCCCC-CCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEeccccccC
Confidence            478888999988999999998543 6799999999999999999999999999999987642  33333221 111    


Q ss_pred             -ccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          258 -AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       258 -~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                       .+....+.+++.+..........++|+.+++|++++++.+++..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~~~~~  142 (160)
T d1ryaa_          97 TDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVH  142 (160)
T ss_dssp             SSSCEEEEEEEEEEECCGGGCCCCSSSEEEEEEECHHHHHHCTTBC
T ss_pred             CCcceEEEEEEEEEEecCCCccCCCcceEEEEEEEHHHhhcCcccc
Confidence             111222333333343444555567899999999999999887654

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.81  E-value=8.6e-20  Score=162.17  Aligned_cols=138  Identities=19%  Similarity=0.288  Sum_probs=97.8

Q ss_pred             CCCCCCCCccceEEEEEEEe--CC---CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEE
Q 019077          175 PCMLPGSPSHQIGVGGFVMN--DK---REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMV  249 (346)
Q Consensus       175 ~~~lp~~~~~~v~V~avVin--~~---~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll  249 (346)
                      ++.++.|+++.++|+++|+.  .+   .+|||++|.+. .+.|.|.||||+||+||++.+||+||++||||+++....+.
T Consensus        27 ~~~~~~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~-p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~  105 (202)
T d2fmla2          27 QQELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGH-PFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIE  105 (202)
T ss_dssp             TSCCCCCCCCEEEEEEEEEEEETTTTEEEEEEEEECSS-SSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred             cccCCCCCCCccEEEEEEEEEecCCCeeEEEEEEecCC-CCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceee
Confidence            45678899999999988864  32   37999999854 36799999999999999999999999999999987655443


Q ss_pred             EEEeee--c-cccc-eeEEEEEEEEecCCccccCCccccceEEEEchhhhhc-------------------------CCC
Q 019077          250 AFRHVH--L-VAFE-KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVK-------------------------QPF  300 (346)
Q Consensus       250 ~~~~~~--~-~~~~-~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~-------------------------l~~  300 (346)
                      .+....  . .+.+ ...++|.+.+.  ... ....+|+.+++|+++++++.                         ++|
T Consensus       106 ~~~~~~~~~r~~~~~~i~~~~~~~~~--~~~-~~~~~e~~~~~Wf~ld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LaF  182 (202)
T d2fmla2         106 QLHSFSRPDRDPRGWVVTVSYLAFIG--EEP-LIAGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAF  182 (202)
T ss_dssp             EEEEECCTTSSTTSSEEEEEEEEECC--CCC-CCCCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCST
T ss_pred             eeeecccCCccccceEEEEEEEEEeC--CCC-cCCCcceeeEEEEeHHHCcchhcccchhhhhhhhhhhhccccCCCccc
Confidence            332211  1 1222 33445555432  223 33467899999999999864                         223


Q ss_pred             CCccHHHHHHHHHHHHHhcCC
Q 019077          301 YLEDDMSRKVIDICIKAYDDR  321 (346)
Q Consensus       301 ~~~~~~~~~ii~~~l~~~~~~  321 (346)
                      +|     .+||+.++++++++
T Consensus       183 DH-----~~Ii~~Al~Rlr~k  198 (202)
T d2fmla2         183 DH-----SEIIIKAFNRVVDK  198 (202)
T ss_dssp             TH-----HHHHHHHHHHHHHH
T ss_pred             CH-----HHHHHHHHHHHHHh
Confidence            33     56788888887765

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.80  E-value=4.9e-19  Score=150.09  Aligned_cols=115  Identities=13%  Similarity=0.191  Sum_probs=81.0

Q ss_pred             eEEEEEEEe-CCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077          186 IGVGGFVMN-DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL  264 (346)
Q Consensus       186 v~V~avVin-~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~  264 (346)
                      ++..++|++ +++++||++|.......+.|.+|||++|+|||+.+||+||++||||+++....+++.......... ..+
T Consensus         9 ~~~~~~i~~~~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~-~~~   87 (155)
T d2b06a1           9 LTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGG-RYI   87 (155)
T ss_dssp             EEEEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSC-EEE
T ss_pred             EEEEEEEEECCCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCCC-eEE
Confidence            444455666 557999999874433457799999999999999999999999999999998888876554433222 222


Q ss_pred             EEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCc
Q 019077          265 LFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLE  303 (346)
Q Consensus       265 ~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~  303 (346)
                      .+++.+...++.  +...|..+++|+++++++++++...
T Consensus        88 ~~~~~~~~~~~~--~~~~e~~~~~W~~~~el~~l~~~~~  124 (155)
T d2b06a1          88 VICYKATEFSGT--LQSSEEGEVSWVQKDQIPNLNLAYD  124 (155)
T ss_dssp             EEEEEECEEEEC--CCCBTTBEEEEEEGGGGGGSCBCTT
T ss_pred             EEEEEEEecCCc--cCCCchheEEEEEHHHhccCCCCch
Confidence            222222222233  4466788999999999999987764

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.6e-19  Score=151.31  Aligned_cols=118  Identities=19%  Similarity=0.213  Sum_probs=83.7

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD  263 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~  263 (346)
                      +++.+.++ +..+++|||++|++. .+.|.|.+|||++|+||++.+||+||++||||+++.....++.............
T Consensus         4 ~r~~~~v~-i~~~~~vLL~~r~~~-~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   81 (156)
T d1irya_           4 SRLYTLVL-VLQPQRVLLGMKKRG-FGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELM   81 (156)
T ss_dssp             CEEEEEEC-EECSSEEEEEEESSS-SSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTCSCEE
T ss_pred             cEEEEEEE-EEECCEEEEEEecCC-CCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEEEcCCCCEEE
Confidence            34555444 446789999999743 3679999999999999999999999999999999987777765444333323333


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccH
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDD  305 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~  305 (346)
                      ..+++......+  .+...|..+++|+++++++.+++.+.++
T Consensus        82 ~~~~~~~~~~~~--~~~~~ee~~~~W~~~~~l~~~~~~~~d~  121 (156)
T d1irya_          82 DVHVFCTDSIQG--TPVESDEMRPCWFQLDQIPFKDMWPDDS  121 (156)
T ss_dssp             EEEEECCCCBCS--CCCCCSSEEEEEEETTCCCSTTTCSSHH
T ss_pred             EEEEEEEEeecC--cccCCchhheEEeEHHHCCcCCCCccHH
Confidence            334443332222  2334455678999999999998877543

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=7.6e-19  Score=150.14  Aligned_cols=111  Identities=20%  Similarity=0.237  Sum_probs=85.8

Q ss_pred             eEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077          186 IGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD  263 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~  263 (346)
                      .+|.++|+|++|+|||++|. .+..++|.|.+| ||++++||++++||+||++|||||+......++.............
T Consensus        31 ~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~  110 (161)
T d2fkba1          31 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWG  110 (161)
T ss_dssp             EEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEEEEeecCCcEEEE
Confidence            46788899999999999997 455678999887 8999999999999999999999999877666654433322222223


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      .+|.+.   ..+++.++++|+.+++|++++++.+.+
T Consensus       111 ~~~~~~---~~~~~~~~~~Ev~~~~w~~~~el~~~~  143 (161)
T d2fkba1         111 ALFSCV---SHGPFALQEDEVSEVCWLTPEEITARC  143 (161)
T ss_dssp             EEEEEE---CCCCCCCCTTTEEEEEEECHHHHHTTG
T ss_pred             EEEEEE---ECCCCcCChhHeeEEEEEeHHHHhhhh
Confidence            333332   345677888999999999999998864

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=5.4e-19  Score=150.20  Aligned_cols=111  Identities=17%  Similarity=0.273  Sum_probs=82.8

Q ss_pred             EEEEEEEeCCCeEEEEeec-CCCCCCCceee-eeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEE--Eeeeccccc--
Q 019077          187 GVGGFVMNDKREVLVVKEK-CPRSCSGMWKI-PTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAF--RHVHLVAFE--  260 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~-~~~~~~g~W~l-PGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~--~~~~~~~~~--  260 (346)
                      +|+++|+|++|++||+||. .+..++|.|.+ |||++++|||+.+||+||++|||||++...+.+..  .+......+  
T Consensus         4 a~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~~~~   83 (153)
T d1hzta_           4 AFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIV   83 (153)
T ss_dssp             CEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCE
T ss_pred             EEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceecccccccccccccc
Confidence            6788999999999999997 55567899987 99999999999999999999999999887665531  111111111  


Q ss_pred             eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077          261 KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       261 ~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      ...+++++... .+..+.++++|+.+++|++++|+.+.
T Consensus        84 ~~~~~~~~~~~-~~~~~~~~~~Ev~~~~W~~~~el~~~  120 (153)
T d1hzta_          84 ENEVCPVFAAR-TTSALQINDDEVMDYQWCDLADVLHG  120 (153)
T ss_dssp             EEEECCEEEEE-BCSCCCCCTTTEEEEEEECHHHHHHH
T ss_pred             ceeEEEEEEEe-eCCCccCChhheeEEEEeeHHHHHHH
Confidence            12222222222 34567788889999999999999764

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.78  E-value=9.1e-20  Score=154.04  Aligned_cols=109  Identities=24%  Similarity=0.240  Sum_probs=72.3

Q ss_pred             EEEEEEEeCC-CeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077          187 GVGGFVMNDK-REVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL  265 (346)
Q Consensus       187 ~V~avVin~~-~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~  265 (346)
                      .+||+|+|.+ ++|||+|+.+   ..+.|.||||++|.||++.+||+||++||||+++................. ...+
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~---~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~-~~~~   79 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWK---ASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQ-NVRL   79 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESS---TTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTE-EEEE
T ss_pred             EEEEEEEECCCCEEEEEEEeC---CCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceEEeecccCc-eEEE
Confidence            4688888865 7999999863   357899999999999999999999999999998865333221111111112 2233


Q ss_pred             EEEEEecCCccc-cCCccccceEEEEchhhhhcCC
Q 019077          266 FVCMLKPLSFEI-TIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       266 fv~~l~~~~~~i-~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      |++........+ ..+.+|+.+++|+++++++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~  114 (151)
T d2a6ta2          80 YIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFK  114 (151)
T ss_dssp             EEECCCCTTCCCC------EEEEEEEEGGGSTTCC
T ss_pred             EEEEEeccCCcccccCCCccceEEEEEHHHhhhhh
Confidence            444332222332 2346799999999999998764

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.78  E-value=9.5e-19  Score=149.57  Aligned_cols=112  Identities=15%  Similarity=0.221  Sum_probs=83.7

Q ss_pred             eEEEEEEEeCCCeEEEEeec-CCCCCCCceeee-eEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeE
Q 019077          186 IGVGGFVMNDKREVLVVKEK-CPRSCSGMWKIP-TGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSD  263 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~-~~~~~~g~W~lP-GG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~  263 (346)
                      .+|+++|+|++|++||.+|. .+..++|.|.+| ||++++||++.+||+||++||||+++....++..............
T Consensus        29 ~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~  108 (162)
T d2o5fa1          29 RVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSS  108 (162)
T ss_dssp             EEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSSCSS
T ss_pred             EEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEEeccccccceE
Confidence            57888999999999999887 455688999877 9999999999999999999999999988777665544443333333


Q ss_pred             EEEEEEEecCCccccCCccccceEEEEchhhhhcC
Q 019077          264 LLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQ  298 (346)
Q Consensus       264 ~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l  298 (346)
                      .++++.+. ....+.++++|+.+++|++++++.+.
T Consensus       109 ~~~~~~~~-~~~~~~~~~~Ev~~~~W~~~eel~~~  142 (162)
T d2o5fa1         109 FMCVYELR-SDATPIFNPNDISGGEWLTPEHLLAR  142 (162)
T ss_dssp             EEEEEEEE-CSSCCCCCTTTCSEEEEECHHHHHHH
T ss_pred             EEEEEEEe-cCCCccCChhHeeEEEEeeHHHHHHH
Confidence            33343333 24566777889999999999999765

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.78  E-value=1.9e-19  Score=150.53  Aligned_cols=124  Identities=20%  Similarity=0.300  Sum_probs=81.0

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecc---cccee
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLV---AFEKS  262 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~---~~~~~  262 (346)
                      +.++++|++ +++|||++|+    ..|.|.+|||++|+||++.+||+||++||||+++.....+........   .....
T Consensus         2 v~a~~vi~~-d~kvLl~~r~----~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   76 (152)
T d1k2ea_           2 IVTSGVLVE-NGKVLLVKHK----RLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLV   76 (152)
T ss_dssp             EEEEEECEE-TTEEEEEECT----TTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSE
T ss_pred             EEEEEEEEE-CCEEEEEEEc----CCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcceEE
Confidence            345566665 5899999987    457899999999999999999999999999999876655432211111   11111


Q ss_pred             EEEEEEEEecCC--------ccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHh
Q 019077          263 DLLFVCMLKPLS--------FEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAY  318 (346)
Q Consensus       263 ~~~fv~~l~~~~--------~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~  318 (346)
                      ...+.... ...        ....++++|+.+++|++++++.+++..+.   .+++++.+++.+
T Consensus        77 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~---~~~~l~~~~~~l  136 (152)
T d1k2ea_          77 ILEEVVKY-PEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRIETFPN---VRKVVSLALSTL  136 (152)
T ss_dssp             EEEEEEEC-SSCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGSCBSTT---HHHHHHHHHHHH
T ss_pred             EEEEEEec-CCCceEEEEEeEeeecCCCCcceEEEeEHHHHhhCCCCHH---HHHHHHHHHHHH
Confidence            11111111 000        01223467899999999999999887653   345555555444

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.77  E-value=1.6e-18  Score=142.67  Aligned_cols=125  Identities=24%  Similarity=0.303  Sum_probs=85.1

Q ss_pred             EEEEEEEe---CCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeec--cccc-
Q 019077          187 GVGGFVMN---DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHL--VAFE-  260 (346)
Q Consensus       187 ~V~avVin---~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~--~~~~-  260 (346)
                      +++++|++   ++.++||++|..   .+|.|.+|||++|+||++.+||+||++||||+++.....+.......  .... 
T Consensus         4 aag~vv~~~~~~~~~~Ll~~r~~---~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   80 (137)
T d1ktga_           4 AAGLVIYRKLAGKIEFLLLQASY---PPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGK   80 (137)
T ss_dssp             EEEEEEEEEETTEEEEEEEEESS---TTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTE
T ss_pred             EEEEEEEEEcCCCEEEEEEEEcC---CCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCCCcc
Confidence            46666664   335799998874   34899999999999999999999999999999988766654322211  1112 


Q ss_pred             -eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhc
Q 019077          261 -KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYD  319 (346)
Q Consensus       261 -~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~  319 (346)
                       ....+|++... ....+.+ +.|+.+++|++++++.++....   -.+.+++.+.+.+.
T Consensus        81 ~~~~~~~~~~~~-~~~~~~~-~~E~~~~~W~~~~e~~~~~~~~---~~~~~l~~~~~~L~  135 (137)
T d1ktga_          81 PKSVKYWLAKLN-NPDDVQL-SHEHQNWKWCELEDAIKIADYA---EMGSLLRKFSAFLA  135 (137)
T ss_dssp             EEEEEEEEEEEC-SCCCCCC-CTTEEEEEEECHHHHHHHHCCH---HHHHHHHHHHHHHH
T ss_pred             eEEEEEEEEEec-CCCCcCC-CcceEEEEEEEHHHHHHhcCCH---HHHHHHHHHHHHhc
Confidence             22233333332 2233333 5789999999999998875432   34667777776654

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=2.2e-18  Score=143.97  Aligned_cols=125  Identities=14%  Similarity=0.124  Sum_probs=84.1

Q ss_pred             cceEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccc---
Q 019077          184 HQIGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFE---  260 (346)
Q Consensus       184 ~~v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~---  260 (346)
                      .+++++++|+++++++||+.+.    ..|.|.||||++|+||++.+||+||++||||+++.....++..........   
T Consensus        16 ~r~~~~~vi~~~~~~~lll~~~----~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   91 (147)
T d2azwa1          16 TRYAAYIIVSKPENNTMVLVQA----PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQT   91 (147)
T ss_dssp             ECCEEEEECEEGGGTEEEEEEC----TTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTE
T ss_pred             CCCeEEEEEEECCCCEEEEEEc----CCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeeccCCc
Confidence            4578888999877655555554    247899999999999999999999999999999988877765443322111   


Q ss_pred             -eeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077          261 -KSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       261 -~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~  316 (346)
                       .....+++...... ......+|+.+++|++++++.++....   ..+.+++.+++
T Consensus        92 ~~~~~~~~~~~~~~~-~~~~~~~e~~~~~W~~~~e~~~~l~~~---~~r~~l~~~la  144 (147)
T d2azwa1          92 AYYNPGYFYVANTWR-QLSEPLERTNTLHWVAPEEAVRLLKRG---SHRWAVEKWLA  144 (147)
T ss_dssp             EEEEEEEEEEEEEEE-ECSSCC-CCSEEEEECHHHHHHHBSCH---HHHHHHHHHHH
T ss_pred             eEEEEEEEEEEEecc-ccCCCCccceEEEEEEHHHHHHHcCCh---hHHHHHHHHHh
Confidence             11222222222112 223345688899999999988765433   34667776665

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=2.5e-18  Score=146.96  Aligned_cols=111  Identities=23%  Similarity=0.286  Sum_probs=77.3

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEE
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLL  265 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~  265 (346)
                      .+|++++++ ++++||+++.+++.+...|++|||.+|+||++++||+||++||||+.+....+..+. ..+........+
T Consensus        25 ~aV~vl~~~-~~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~~~~l~~~~-~~~g~~~~~~~~  102 (158)
T d1v8ya_          25 PAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYLFSYF-VSPGFTDEKTHV  102 (158)
T ss_dssp             CEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEE-SCTTTBCCEEEE
T ss_pred             CEEEEEEEE-CCEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcceeeeeccee-cCCCcceEEEEE
Confidence            567777776 579999998877778889999999999999999999999999999988654444433 333323334455


Q ss_pred             EEEEEecCCccccCCccccceEEEEchhhhhcCC
Q 019077          266 FVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       266 fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      |++.... .....++++|..++.|++++|+.++.
T Consensus       103 f~a~~~~-~~~~~~d~~E~~ev~w~~~~e~~~~i  135 (158)
T d1v8ya_         103 FLAENLK-EVEAHPDEDEAIEVVWMRPEEALERH  135 (158)
T ss_dssp             EEEEEEE-ECC--------CEEEEECHHHHHHHH
T ss_pred             EEEcccc-ccccCCCCCeeEEEEEEEHHHHHHHH
Confidence            5554321 23445667788899999999998763

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-18  Score=143.20  Aligned_cols=113  Identities=20%  Similarity=0.283  Sum_probs=79.1

Q ss_pred             ceEEEEEEEe--CCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccccee
Q 019077          185 QIGVGGFVMN--DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKS  262 (346)
Q Consensus       185 ~v~V~avVin--~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~  262 (346)
                      +..++++|++  +++.+||+++++   .+|.|.+|||++++|||+.+||+||++||||+++....++..........  .
T Consensus        11 r~~a~~vv~~~~~~~~~lL~~~~~---~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~--~   85 (135)
T d2fvva1          11 KKRAACLCFRSESEEEVLLVSSSR---HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKH--R   85 (135)
T ss_dssp             EEEEEEEEESSTTCCEEEEEECSS---CTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTE--E
T ss_pred             ceEEEEEEEEecCCCEEEEEEEeC---CCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCc--c
Confidence            3557777776  345667776653   45899999999999999999999999999999998888877654333222  2


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCC
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYL  302 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~  302 (346)
                      ..++.+.+...........+|+.+++|++++++.++...+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~  125 (135)
T d2fvva1          86 TYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYH  125 (135)
T ss_dssp             EEEEEEEEEEECSSCHHHHHHCCCEEEEEHHHHHHHHTTT
T ss_pred             EEEEEEEEEeecCCCCCCCCceeEEEEEEHHHHHHHHhcC
Confidence            2222232222223333346678899999999998875433

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-17  Score=140.07  Aligned_cols=130  Identities=20%  Similarity=0.273  Sum_probs=93.4

Q ss_pred             ceEEEEEEE---------eCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEE---
Q 019077          185 QIGVGGFVM---------NDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFR---  252 (346)
Q Consensus       185 ~v~V~avVi---------n~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~---  252 (346)
                      ..++|++++         +++.++||+++..   +.+.|.+|||++++||++.+||+||++||||+++....++...   
T Consensus         8 ~~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~---~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~   84 (153)
T d1xsba_           8 LRACGLIIFRRCLIPKVDNNAIEFLLLQASD---GIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRE   84 (153)
T ss_dssp             EEEEEEEEEEECSSCSSSSTTEEEEEEEESS---TTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEE
T ss_pred             hheeEEEEEeccccccccCCCCEEEEEEecC---CCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceee
Confidence            356777777         3668999999874   2467999999999999999999999999999998776665321   


Q ss_pred             -eeeccccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCC
Q 019077          253 -HVHLVAFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDR  321 (346)
Q Consensus       253 -~~~~~~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~  321 (346)
                       ............+|.+.....+..+.+ ++|+.+++|++++++.++...+   -.+.+++.+.+.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~W~~~~e~~~~~~~~---~~~~iL~~~~~~L~~~  150 (153)
T d1xsba_          85 LNYVARNKPKTVIYWLAEVKDYDVEIRL-SHEHQAYRWLGLEEACQLAQFK---EMKAALQEGHQFLCSI  150 (153)
T ss_dssp             EEEESSSCEEEEEEEEEEESCTTCCCCC-CTTEEEEEEECHHHHHHHTCSH---HHHHHHHHHHHHHTTS
T ss_pred             ecccccCceeEEEEEEEEEeecccccCC-CcceeEEEEEEHHHHHHhcCCH---HHHHHHHHHHHHHhcc
Confidence             111111123344555555444444443 5789999999999999886533   4578888888887764

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.74  E-value=4.9e-18  Score=148.95  Aligned_cols=117  Identities=15%  Similarity=0.140  Sum_probs=87.4

Q ss_pred             ceEEEEEEEe-CCCeEEEEeec-CCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccccee
Q 019077          185 QIGVGGFVMN-DKREVLVVKEK-CPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKS  262 (346)
Q Consensus       185 ~v~V~avVin-~~~~VLLvrr~-~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~  262 (346)
                      ..+|.+++++ .+.+|||++|. ....++|.|+||||++|+||++.+||+||++||||++...+++++.........+..
T Consensus        32 ~aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~~~~~~  111 (187)
T d1nqza_          32 RAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFH  111 (187)
T ss_dssp             EEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEE
T ss_pred             ccEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceeeccccE
Confidence            3445444553 34689999998 334578999999999999999999999999999999999999998765554555555


Q ss_pred             EEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          263 DLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       263 ~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      ...|++.+.........++.|+.++.|++++++.+.+..
T Consensus       112 V~p~v~~l~~~~~~~~~~~~EV~~v~~vpl~~L~~~~~~  150 (187)
T d1nqza_         112 VTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRAVPLV  150 (187)
T ss_dssp             EEEEEEEECGGGGGGCCCCTTEEEEECCBHHHHHHSCCE
T ss_pred             EEEEEEEECCccccccccCCcceEEEeccHHHHhcCccc
Confidence            556777765444444456789999999999999887643

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=3e-17  Score=143.69  Aligned_cols=112  Identities=20%  Similarity=0.161  Sum_probs=84.9

Q ss_pred             EEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEE
Q 019077          187 GVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLF  266 (346)
Q Consensus       187 ~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~f  266 (346)
                      +|.++.. .++++||+++.+.+.....|+||||++|+||++++||+||++||||+.+.....++..+..+........+|
T Consensus        50 ~v~vi~~-~~~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~~~~~~  128 (186)
T d1vhza_          50 AVMIVPI-VDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIV  128 (186)
T ss_dssp             EEEEEEE-ETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEEE
T ss_pred             EEEEEEc-cCCEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeeccccccceEEEEE
Confidence            3433333 467899999887777778899999999999999999999999999999998888886655544334344444


Q ss_pred             EEE-EecCCccccCCccccceEEEEchhhhhcCCCC
Q 019077          267 VCM-LKPLSFEITIYEKEIQAAKWMPLEEFVKQPFY  301 (346)
Q Consensus       267 v~~-l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~  301 (346)
                      ++. +.+  .....+++|..++.|++++++.++...
T Consensus       129 ~a~~~~~--~~~~~de~E~~~~~~~~~~e~~~~i~~  162 (186)
T d1vhza_         129 VAQDLYP--ESLEGDEPEPLPQVRWPLAHMMDLLED  162 (186)
T ss_dssp             EEEEEEE--CCCCCCCSSCCCEEEEEGGGGGGGGGC
T ss_pred             EEEeccc--ccCCCCCCcEEEEEEEeHHHHHHHHHc
Confidence            443 332  344567788999999999999887543

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=1.8e-17  Score=146.98  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=83.8

Q ss_pred             eEEEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEec-CCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEE
Q 019077          186 IGVGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYIN-KSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDL  264 (346)
Q Consensus       186 v~V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve-~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~  264 (346)
                      .+|++++++++++|||+++.+.+.+...|+||+|.|| +||++++||+||++||||+.+.....++..+..+........
T Consensus        39 ~~V~vl~~~~~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~~~~~~  118 (202)
T d1mqea_          39 GAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVR  118 (202)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEE
T ss_pred             CeEEEEEECCCCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccCccCCcEEE
Confidence            5677778898999999999877767778999999999 799999999999999999999988888876555544444455


Q ss_pred             EEEEEEecCCccccC-CccccceEEEEchhhhhcCCC
Q 019077          265 LFVCMLKPLSFEITI-YEKEIQAAKWMPLEEFVKQPF  300 (346)
Q Consensus       265 ~fv~~l~~~~~~i~~-~~~Ei~~~~Wv~~eel~~l~~  300 (346)
                      +|++........... +++|..+++|++++|+.++..
T Consensus       119 ~fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~i~  155 (202)
T d1mqea_         119 VYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVL  155 (202)
T ss_dssp             EEEEEEEEECCC----------CEEEEEHHHHHHHHT
T ss_pred             EEEEEeccccCCCCCCCccceEEEEEEEHHHHHHHHH
Confidence            555543222222222 334566899999999988644

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.70  E-value=5.7e-17  Score=133.02  Aligned_cols=118  Identities=14%  Similarity=0.132  Sum_probs=85.3

Q ss_pred             EEEEEEeCCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccccceeEEEEE
Q 019077          188 VGGFVMNDKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAFEKSDLLFV  267 (346)
Q Consensus       188 V~avVin~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~~~~~~~fv  267 (346)
                      +.++|+|++|++|+.||...+.++|+|+||||.++.+|+ .+++.||++||+|+++...+.++...+...++.....+|.
T Consensus         7 ~~~vi~~~~g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh~~~~~~~~~   85 (127)
T d1rrqa2           7 AVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFP   85 (127)
T ss_dssp             EEEEEEESSSEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEEEECSSEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccceEecCCeEEEEEEEE
Confidence            445667899999999998777789999999999997777 7899999999999999887777665544444444444565


Q ss_pred             EEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHH
Q 019077          268 CMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIK  316 (346)
Q Consensus       268 ~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~  316 (346)
                      |....  .     ..+..+.+|++++++.+++++.   ..+++++.+.+
T Consensus        86 ~~~~~--~-----~~~~~~~~Wv~~~el~~~~~p~---~~~Ki~~~~~~  124 (127)
T d1rrqa2          86 GRLVH--G-----GPVEEPYRLAPEDELKAYAFPV---SHQRVWREYKE  124 (127)
T ss_dssp             EEEEC--C-----SCCCTTEEEEEGGGGGGSCCCH---HHHHHHHHHHH
T ss_pred             EEECC--C-----CccccceEEeeHHHHhHCCCCh---HHHHHHHHHHH
Confidence            65431  1     1234578999999999999975   45677766653

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.1e-15  Score=134.16  Aligned_cols=114  Identities=14%  Similarity=0.031  Sum_probs=83.6

Q ss_pred             eEEEEEEEeC-CCeEEEEeecCCCC-----CCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeecccc
Q 019077          186 IGVGGFVMND-KREVLVVKEKCPRS-----CSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVAF  259 (346)
Q Consensus       186 v~V~avVin~-~~~VLLvrr~~~~~-----~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~~  259 (346)
                      .+|+++++++ +++|+|+++.+.+.     ....|++|+|.+|+||++++||+||++||||+.+..+..++..+..+...
T Consensus        58 ~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~spg~~  137 (209)
T d1g0sa_          58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGT  137 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTTB
T ss_pred             CEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccccccCCccc
Confidence            5677777775 47899999986543     33478999999999999999999999999999999888888765555544


Q ss_pred             ceeEEEEEEEEecCCc-c--ccCCccccceEEEEchhhhhcCC
Q 019077          260 EKSDLLFVCMLKPLSF-E--ITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       260 ~~~~~~fv~~l~~~~~-~--i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      .....+|++....... .  ...+++|..++.|++++|+.++.
T Consensus       138 ~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i  180 (209)
T d1g0sa_         138 SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWV  180 (209)
T ss_dssp             CCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHH
T ss_pred             CCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHH
Confidence            5556667776432211 1  12345677789999999988754

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.3e-13  Score=128.25  Aligned_cols=117  Identities=15%  Similarity=0.172  Sum_probs=79.0

Q ss_pred             eEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeE---------------------EEEEEeeec
Q 019077          198 EVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLE---------------------MVAFRHVHL  256 (346)
Q Consensus       198 ~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~---------------------ll~~~~~~~  256 (346)
                      +|||++|+    ..|.|.||||+||+||++.+||+||+.||||+.+....                     +.+......
T Consensus       140 qvLlIkR~----d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddpr  215 (292)
T d1q33a_         140 QFVAIKRK----DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPR  215 (292)
T ss_dssp             EEEEEECT----TTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTT
T ss_pred             EEEEEEec----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccccC
Confidence            69999997    56899999999999999999999999999999875321                     112111111


Q ss_pred             cccc--eeEEEEEEEEecCC--ccccC-CccccceEEEEchhhhhcCCCCCccHHHHHHHHHHHHHhcCCCC
Q 019077          257 VAFE--KSDLLFVCMLKPLS--FEITI-YEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICIKAYDDRFN  323 (346)
Q Consensus       257 ~~~~--~~~~~fv~~l~~~~--~~i~~-~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l~~~~~~~~  323 (346)
                      ....  ...+.|.+......  ....+ ..+|+.+++|++++++..+.+.+     +.+|+.+.+++...|.
T Consensus       216 ntd~aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~L~~~H-----~~il~~aa~~~~Ah~~  282 (292)
T d1q33a_         216 NTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASH-----SQFIKLVAEKRDAHWS  282 (292)
T ss_dssp             CCSSEEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCCSTTH-----HHHHHHHHHHHTCCCC
T ss_pred             CCCCCEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhccccchhhH-----HHHHHHHHHHHhcccc
Confidence            1111  22334555443211  11222 25789999999999998875544     6788888888776554

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=9.7e-14  Score=121.38  Aligned_cols=113  Identities=12%  Similarity=0.058  Sum_probs=78.8

Q ss_pred             eEEEEEEEe-CCCeEEEEeecCCCC------CCCceeeeeEEecCCCCHHHHHHHHHHHHhCCceeeeEEEEEEeeeccc
Q 019077          186 IGVGGFVMN-DKREVLVVKEKCPRS------CSGMWKIPTGYINKSEDLFSGAVREVKEETGVDTIFLEMVAFRHVHLVA  258 (346)
Q Consensus       186 v~V~avVin-~~~~VLLvrr~~~~~------~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~v~~~~ll~~~~~~~~~  258 (346)
                      .+|++++++ .+++|||+++.+.+.      ..-.|.+|||.+| ||++++||+||+.||||+.+.....++..+..+..
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~~~spG~  122 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGG  122 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTT
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcceeecCccc
Confidence            477778887 458999999876542      3457789999988 66789999999999999999888888866554444


Q ss_pred             cceeEEEEEEEEecCCc--cccCCccccceEEEEchhhhhcCC
Q 019077          259 FEKSDLLFVCMLKPLSF--EITIYEKEIQAAKWMPLEEFVKQP  299 (346)
Q Consensus       259 ~~~~~~~fv~~l~~~~~--~i~~~~~Ei~~~~Wv~~eel~~l~  299 (346)
                      .....++|++.......  ....+++|..++.|++++|+.++.
T Consensus       123 ~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i  165 (189)
T d1viua_         123 VTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMI  165 (189)
T ss_dssp             BCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHH
T ss_pred             cCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHH
Confidence            44455566665432111  122346688899999999988753

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1e-12  Score=108.62  Aligned_cols=126  Identities=14%  Similarity=0.150  Sum_probs=85.7

Q ss_pred             ccceEEEEEEEe---CCCeEEEEeecCCCCCCCceeeeeEEecCCCCHHHHHHHHHHHHhCCc--eeeeEEEEEEeeecc
Q 019077          183 SHQIGVGGFVMN---DKREVLVVKEKCPRSCSGMWKIPTGYINKSEDLFSGAVREVKEETGVD--TIFLEMVAFRHVHLV  257 (346)
Q Consensus       183 ~~~v~V~avVin---~~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs~~eAA~REv~EETGl~--v~~~~ll~~~~~~~~  257 (346)
                      .....+.++|.+   .+++|||.||...+.++|+|+||+|.++.||+..+++.||..+|.+..  +.....++...+...
T Consensus        10 ~~~~~~~~vv~~~~~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fs   89 (142)
T d1x51a1          10 REESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFS   89 (142)
T ss_dssp             TEEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCS
T ss_pred             CEEEEEEEEEEecCCCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccC
Confidence            344455556655   368999999997778999999999999999999988887766666543  333444443333333


Q ss_pred             ccceeEEEEEEEEecCCccccCCccccceEEEEchhhhhcCCCCCccHHHHHHHHHHH
Q 019077          258 AFEKSDLLFVCMLKPLSFEITIYEKEIQAAKWMPLEEFVKQPFYLEDDMSRKVIDICI  315 (346)
Q Consensus       258 ~~~~~~~~fv~~l~~~~~~i~~~~~Ei~~~~Wv~~eel~~l~~~~~~~~~~~ii~~~l  315 (346)
                      ++.....+|.|.+  .++..  ...|..+.+|++++++.+++++.   ..+++++.+.
T Consensus        90 H~~~~~~v~~~~~--~~~~~--~~~~~~~~~W~~~~el~~~~lp~---~~~Kil~~~~  140 (142)
T d1x51a1          90 HIKLTYQVYGLAL--EGQTP--VTTVPPGARWLTQEEFHTAAVST---AMKKVFRVYQ  140 (142)
T ss_dssp             SCEEEEEEEEEEC--SSCCC--CCCCCTTEEEEEHHHHHHSCCCH---HHHHHHHHHH
T ss_pred             CcceEEEEEEEEE--eCCCc--ccccCccCEEeeHHHccccCCCH---HHHHHHHHHh
Confidence            3333344555544  23332  34567889999999999998876   5566666554

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.26  E-value=9.5e-12  Score=109.03  Aligned_cols=97  Identities=20%  Similarity=0.267  Sum_probs=63.7

Q ss_pred             CCeEEEEeecCCCCCCCceeeeeEEecCCCC-HHHHHHHHHHHHhCCceeeeEEEE--EEeeecc-cc-ceeEEEEEEEE
Q 019077          196 KREVLVVKEKCPRSCSGMWKIPTGYINKSED-LFSGAVREVKEETGVDTIFLEMVA--FRHVHLV-AF-EKSDLLFVCML  270 (346)
Q Consensus       196 ~~~VLLvrr~~~~~~~g~W~lPGG~ve~GEs-~~eAA~REv~EETGl~v~~~~ll~--~~~~~~~-~~-~~~~~~fv~~l  270 (346)
                      +..|||++|.     .|.|.||||+||+||+ +++||.||++||||+.+...+++.  ....+.. .. ....++|++.+
T Consensus        42 ~~~vl~~~r~-----~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l~~~~~~~~~~~~~~~~~v~~fy~~~~  116 (196)
T d1u20a1          42 RRVLLMMMRF-----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKEL  116 (196)
T ss_dssp             CEEEEEEEET-----TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CcEEEEEEec-----CCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEEEeeEEEEeccCCCCCEEEEEEEEEEc
Confidence            4567777664     5899999999999996 688999999999999987765532  1112221 11 23344555544


Q ss_pred             ecCC--------ccccCCccccceEEEEchhhhhc
Q 019077          271 KPLS--------FEITIYEKEIQAAKWMPLEEFVK  297 (346)
Q Consensus       271 ~~~~--------~~i~~~~~Ei~~~~Wv~~eel~~  297 (346)
                      ....        ........|+.++.|+|+.++.+
T Consensus       117 ~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1         117 KLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             CHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             chHHhhhhhhcccccCcCCccccceeEEeHHHhcc
Confidence            2110        11122346888999999998865