Citrus Sinensis ID: 019081

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
Protein Sequence
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN
Secondary Structure (PSIPRED)
cccccccccccccEEEEcccccccHHHHHHHHHcccccEEEcccccccHHHHcccccEEEEccccccHHHHHcccccEEEEEcccccccccHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEccccccccHHHcccccccccccccccccccccccccHHHHHHcccEEEEcccccHHHcccccHHHHHccccccEEEEccccccccHHHHHHHHHHccEEEEEccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEccccHHHHHHHHHHccEEEEEccccccHHHHHHHHHcccEEEEEcccccHHHHHHccccEEEEEcccccccccHHHHHHccEEEEEccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccEcEccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccccHHHHHHHcccEHHHHcccHHHHHHcccEEEcHHHHHHHccEEEEcccccccccccEcccHHHHccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccccHccccccEEEcccccHcHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
megmarssdknitrvlfcgphfpashnytkeylqnypsiqvdvvpisdvpdVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGvglegvdinaatrcgikvaripgdvtgnaaSCAELTIYLMLGLLRKQNEMRMAIEQKklgvptgetllgKTVFILGFGNIGVELAKRLRPFGVKIiatkrswashsqVSCQSSALAVKNGiiddlvdekgcheDIFEFASKADVVVCCLSlnkqtagivNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECghlgglgidvawtepfdpndpilkfknvlitphvggvtehSYRSMAKVVGDVALqlhagtpltglefvn
Flexible Loop (DISEMBL)
megmarssdkniTRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKklgvptgetlLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLhagtpltglefvn
Low Complexity Region (SEG)
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPsiqvdvvpisdvpdviANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN
Disordered region (IsUnstruct)
***********ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL****
Disordered Region (DISOPRED)
**************VLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFV*
Disordered Region (DISEMBL)
*********KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK************SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN
Disordered Region (DISPRO)
*******SDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	346	2.2.26 [Sep-21-2011]
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.713	0.728	0.316	5e-32
O29445	527	D-3-phosphoglycerate dehy	yes	no	0.768	0.504	0.3	1e-30
P35136	525	D-3-phosphoglycerate dehy	yes	no	0.812	0.535	0.282	2e-28
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.742	0.764	0.292	1e-27
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.748	0.775	0.296	3e-27
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.843	0.871	0.294	5e-27
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.757	0.786	0.3	6e-26
Q58424	524	D-3-phosphoglycerate dehy	yes	no	0.734	0.484	0.307	8e-26
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.722	0.755	0.303	2e-25
Q91Z53	328	Glyoxylate reductase/hydr	yes	no	0.742	0.783	0.285	5e-25

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  138 bits (348), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 138/278 (49%), Gaps = 31/278 (11%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           LC++ T ++D+  +  A  +K+I  + VG + +DI  AT+ GI V   PG +T    + A
Sbjct: 52  LCLL-TDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTD---AVA 107

Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKR 171
           E T+ L+L + R+  E    I   +   P      TG  L GKT+ ++G G IGV  AKR
Sbjct: 108 EFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKR 167

Query: 172 LRPFGVKIIA--TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
           L  F VKI+    +R W   + +                         D+     K+D+V
Sbjct: 168 LSSFDVKILYYDIERRWDVETVIPNME-------------------FTDLDTLLEKSDIV 208

Query: 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289
              + L K+T  ++N+  L  MKK + L+N ARG ++D EA+   L+ G + G  +DV  
Sbjct: 209 SIHVPLTKETYHLINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFE 268

Query: 290 TEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 327
            EP  PN P+ KF NV++ PH+   T  + + MA++  
Sbjct: 269 QEPLPPNHPLTKFDNVVLAPHIASATIEARQRMAELAA 306

Thermofilum pendens (strain Hrk 5) (taxid: 368408)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 6

>sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 150/300 (50%), Gaps = 34/300 (11%)

Query: 46  ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVAR 104
           I +VP     Y   VV++  ++D+  I  A  +K+I + GVG++ +DINAAT+ GI V  
Sbjct: 36  IREVP----KYEAIVVRSQTKVDAEVIQAAKNLKIIGRAGVGVDNIDINAATQRGIVVVN 91

Query: 105 IPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFIL 159
            PG   GN  S AE  I LML   RK  +   ++     E+KK     G  L GKT  ++
Sbjct: 92  APG---GNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKF---MGIELRGKTAGVI 145

Query: 160 GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI 219
           G G +G E+AKR +   + ++A     +       ++  + VK    D L+         
Sbjct: 146 GLGRVGFEVAKRCKALEMNVLAYDPFVSKE-----RAEQIGVKLVDFDTLL--------- 191

Query: 220 FEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 279
               + +DV+   +   K+T G++ K     MK G ++VN ARGG++D  A+   ++ G 
Sbjct: 192 ----ASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYEAIKAGK 247

Query: 280 LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 339
           +    +DV   EP  P++P+LK  NV+ TPH+   T  +  ++  ++ +  + +  G P+
Sbjct: 248 VAAAALDVYEKEPPSPDNPLLKLDNVVTTPHIAASTREAQLNVGMIIAEDIVNMAKGLPV 307

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain 168) GN=serA PE=3 SV=3

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 156/311 (50%), Gaps = 30/311 (9%)

Query: 37  PSIQVDVVPI-----SDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGV 90
           P I+ D + I     +D  D +  +   +V++  ++  +  ++   +K++ + GVG++ +
Sbjct: 17  PLIESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFNKMTSLKIVGRAGVGVDNI 76

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTG 148
           DI+ AT+ G+ V   P    GN  S AE T  ++  L+R   +  ++++ ++       G
Sbjct: 77  DIDEATKHGVIVINAP---NGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVG 133

Query: 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD 208
             L GKT+ I+G G IG E+A+R R FG+ +         H      +   A K G+   
Sbjct: 134 SELYGKTLGIVGLGRIGSEIAQRARAFGMTV---------HVFDPFLTEERAKKIGV--- 181

Query: 209 LVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY 268
                   E++ E    AD++     L K+T G++NK  ++  KKG  L+N ARGG++D 
Sbjct: 182 ---NSRTFEEVLE---SADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDE 235

Query: 269 EAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 328
            A+   LE GH+ G  +DV   EP   ++ ++    V+ TPH+G  T+ +  ++A  V +
Sbjct: 236 AALLEALENGHVAGAALDVFEVEP-PVDNKLVDHPLVIATPHLGASTKEAQLNVAAQVSE 294

Query: 329 VALQLHAGTPL 339
             LQ   G P+
Sbjct: 295 EVLQFAKGLPV 305

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 146/291 (50%), Gaps = 34/291 (11%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI 105
           +  V DV A   L  + + R+D      A +++++  + VG + +D+  ATR GI V   
Sbjct: 40  LEKVKDVDA---LVTMLSERIDQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTNT 96

Query: 106 PGDVTGNAASCAELTIYLMLGLLR---KQNEMRMAIEQKKLGVP------TGETLLGKTV 156
           P DV  NA   A+    L+L   R   K ++   + E K+ G+        G  L GKT+
Sbjct: 97  P-DVLTNA--TADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTI 153

Query: 157 FILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH 216
            I+GFG IG  +A+R + F ++I+   R+  S ++    +                   +
Sbjct: 154 GIVGFGRIGQAIARRAKGFNMRILYYSRTRKSQAEKELGAE------------------Y 195

Query: 217 EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276
             + E   ++D V+  + L K+T  ++N+  L  MK  ++LVNIARG ++D +A+   L+
Sbjct: 196 RPLEEVLKESDFVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALK 255

Query: 277 CGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 327
            G + G G+DV   EP+  N+ +    NV++TPH+G  T  +  +MA++V 
Sbjct: 256 EGWIAGAGLDVFEEEPYY-NEELFSLDNVVLTPHIGSATFEAREAMAELVA 305

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 147/293 (50%), Gaps = 34/293 (11%)

Query: 44  VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA 103
           V +  V DV A   L  + + R+D+     A ++K++  + VG + +DI  AT+ G+ + 
Sbjct: 38  VLLEKVRDVDA---LVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYIT 94

Query: 104 RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI---EQKKLGVP------TGETLLGK 154
             P DV  NA   A++   L+L   R+  E    +   E KK GV        G  + G+
Sbjct: 95  NTP-DVLTNA--TADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGR 151

Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 214
           T+ I+GFG IG  +A+R + FG++I+   R+     +    +  +      +D+L+ E  
Sbjct: 152 TIGIVGFGRIGQAIARRAKGFGMRILYNSRTRKPEVEKELGAEFMP-----LDELLKE-- 204

Query: 215 CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHY 274
                      +D VV  + L K+T  ++N+  L  MK  ++LVNIARG ++D EA+   
Sbjct: 205 -----------SDFVVLVVPLTKETYHMINEERLKLMKPTAILVNIARGKVVDTEALVKA 253

Query: 275 LECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 327
           L  G + G G+DV   EP+  ++ +    NV++ PH+G  T  +   MA++V 
Sbjct: 254 LREGWIAGAGLDVFEEEPY-YHEELFSLDNVVLAPHIGSATYGAREGMAELVA 305

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  122 bits (305), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 151/326 (46%), Gaps = 34/326 (10%)

Query: 12  ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCI 71
           +TR +F       S  Y  E    Y     + + +S   +  A Y L    T R+D + +
Sbjct: 8   VTREVFPEALELLSKYYDVEVWDKYQPPPYETL-LSKAREADALYTLL---TDRIDCDLL 63

Query: 72  SRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQ 131
           S+A +++++ Q  VG + +D+  ATR GI V   PG +T    + AE T  L+L   R+ 
Sbjct: 64  SQAPRLRIVAQMAVGFDNIDVECATRLGIYVTNTPGVLT---EATAEFTWALILAAARRV 120

Query: 132 NEMRMAI---EQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
            E    +   E  +L       +  G  L GKT+ ILG G IG  +A+  + FG++II  
Sbjct: 121 VEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYH 180

Query: 183 KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI 242
            RS                K  I  +L  E    ED+     ++D++   L L  +T  +
Sbjct: 181 SRS---------------RKREIEKELGAEYRSLEDLLR---ESDILSIHLPLTDETRHL 222

Query: 243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF 302
           + +S L  MKK ++LVN  RG ++D  A+   L  G +    +DV   EP +PN P+  F
Sbjct: 223 IGESELKLMKKTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEPLNPNHPLTAF 282

Query: 303 KNVLITPHVGGVTEHSYRSMAKVVGD 328
           KNV++ PH    T  +   MA +  +
Sbjct: 283 KNVVLAPHAASATRETRLRMAMMAAE 308

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 144/290 (49%), Gaps = 28/290 (9%)

Query: 44  VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA 103
           V +  V DV A   L  + + R+DS     A +++++  + VG + +D+  ATR GI V 
Sbjct: 38  VLLKKVRDVDA---LVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVT 94

Query: 104 RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT------GETLLGKTVF 157
             P  +T   A  A   +      L + +    + E K+ G+        G  + GKT+ 
Sbjct: 95  NTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIG 154

Query: 158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE 217
           I+GFG IG  +A+R R FG++I+     + S S+       L  +   ++DL+ E     
Sbjct: 155 IVGFGRIGQAVARRARGFGMRIL-----YYSRSRKPEAEKELGAEFRSLEDLLRE----- 204

Query: 218 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 277
                   +D VV  + L K+T  ++N+  L  MKK ++LVNIARG ++D +A+   L+ 
Sbjct: 205 --------SDFVVLAVPLTKETQYMINEERLRLMKKTAILVNIARGKVVDTKALMKALKE 256

Query: 278 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 327
           G + G G+DV   E    N+ +   KNV++ PH+G  T  +   MA++V 
Sbjct: 257 GWIAGAGLDVY-EEEPYYNEELFSLKNVVLAPHIGSATYGAREGMAELVA 305

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q58424|SERA_METJA D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=serA PE=3 SV=1

 Score =  118 bits (295), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 26/280 (9%)

Query: 53  IANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 111
           I +  + VV++  ++  + I +A ++K+I + GVG++ +D+ AAT  GI V   P     
Sbjct: 39  IKDADVLVVRSGTKVTRDVIEKAEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAP---DA 95

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELA 169
           ++ S AELT+ LML   R   +   ++++ +       G  L GKT+ ++G G IG ++ 
Sbjct: 96  SSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVV 155

Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
           KR + FG+ II                  +A   G+  +LVD      DI E   +AD +
Sbjct: 156 KRAKAFGMNIIGYDPYIPKE---------VAESMGV--ELVD------DINELCKRADFI 198

Query: 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289
              + L  +T  I+ +  ++ MKK +++VN ARGGL+D +A+   L+ G +    +DV  
Sbjct: 199 TLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKALYEALKEGKIRAAALDVFE 258

Query: 290 TEPFDPND-PILKFKNVLITPHVGGVTEHSYRSMAKVVGD 328
            EP  P D P+L   NV+ TPH G  TE + ++   +V +
Sbjct: 259 EEP--PKDNPLLTLDNVIGTPHQGASTEEAQKAAGTIVAE 296

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 27/277 (9%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L  + T ++D   +  A ++K+I Q+ VG + +DI  AT+ GI V   PG +T   A  A
Sbjct: 49  LVTLVTDKVDKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLA 108

Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGV---PT---GETLLGKTVFILGFGNIGVELAKR 171
              +  +   + + +    + E KK  V   P    G  L GKT+ I+GFG IG  LAKR
Sbjct: 109 FALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKR 168

Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE-FASKADVVV 230
            + FG+KII   R+    ++                   +E G     FE    ++D + 
Sbjct: 169 AKGFGMKIIYYSRTRKPEAE-------------------EEIGAEYVDFETLLKESDFIS 209

Query: 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 290
             + L K+T  ++ +  L  MK  ++L+N +RG ++D  A+   L+ G + G G+DV   
Sbjct: 210 LHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALIKALKEGWIAGAGLDVFEE 269

Query: 291 EPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 327
           EP+  N+ + K KNV++ PH+G  T  +   MA++V 
Sbjct: 270 EPYY-NEELFKLKNVVLAPHIGSATHEAREGMAELVA 305

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q91Z53|GRHPR_MOUSE Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 139/294 (47%), Gaps = 37/294 (12%)

Query: 42  DVVPISDVPDVIANYH--LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRC 98
           D +P  D+   +   H  LC +   R+D   +  A   +++I    VG++ + ++   + 
Sbjct: 38  DPIPRKDLEQGVVGAHGLLCRLSD-RVDKKLLDAAGANLRVISTLSVGVDHLALDEIKKR 96

Query: 99  GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--------GET 150
           GI+V   PG +T    + AEL + L+L   R+  E   AIE+ K G  +        G  
Sbjct: 97  GIRVGYTPGVLTD---ATAELAVSLLLTTCRRLPE---AIEEVKNGGWSSWSPLWMCGYG 150

Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDL 209
           L   TV I+G G IG  +A+RL+PFGV + + T R          Q+  +          
Sbjct: 151 LSQSTVGIVGLGRIGQAIARRLKPFGVQRFLYTGRQPRPQEAAEFQAEFVP--------- 201

Query: 210 VDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE 269
                    I + A+++D +V   SL   T G+ +K F   MK  ++ +NI+RG +++ E
Sbjct: 202 ---------IAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVVNQE 252

Query: 270 AIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA 323
            +   L  G +   G+DV   EP  P+ P+L  KN +I PH+G  T  +  +M+
Sbjct: 253 DLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYKTRNTMS 306

Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
118488445	343	unknown [Populus trichocarpa]	0.991	1.0	0.775	1e-161
224136053	343	predicted protein [Populus trichocarpa]	0.991	1.0	0.772	1e-160
255561522	380	phosphoglycerate dehydrogenase, putative	0.991	0.902	0.758	1e-156
225460279	373	PREDICTED: d-3-phosphoglycerate dehydrog	1.0	0.927	0.719	1e-146
296089431	343	unnamed protein product [Vitis vinifera]	0.991	1.0	0.723	1e-146
359493304	333	PREDICTED: d-3-phosphoglycerate dehydrog	0.962	1.0	0.714	1e-146
449503247	337	PREDICTED: d-3-phosphoglycerate dehydrog	0.973	1.0	0.716	1e-145
357455585	382	D-3-phosphoglycerate dehydrogenase [Medi	0.976	0.884	0.699	1e-144
388510518	344	unknown [Medicago truncatula]	0.976	0.982	0.696	1e-143
363807464	391	uncharacterized protein LOC100785085 [Gl	0.971	0.859	0.700	1e-141

>gi|118488445|gb|ABK96037.1| unknown [Populus trichocarpa]

 Score =  572 bits (1474), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 266/343 (77%), Positives = 308/343 (89%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M  +SDK+ITRVLFCGP+FPASH YTKEYLQ YP IQVD VP++ VPDVI+NY++C+VK 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRL SN ISRA QMKLIMQFGVG+EGVDI+AAT+ GIKVARIPGD TGNAASCAE+ IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+QK+LG P GETL GKTVFI+GFGNIG++LAKRLRPFGVKIIATK
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243
           RSWA HS+ S QS+   ++NG  D+LVDEKG HEDI++FA ++D+VVCCL +NK+TAGIV
Sbjct: 181 RSWALHSEGSLQSNGFLIENGTNDNLVDEKGSHEDIYKFAGESDIVVCCLRMNKETAGIV 240

Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 303
           NKSF+SSMKKGSLLVNIARGGLLDY A+ H+LE GHLGGLGIDVAWTEPFDP+DPILKF 
Sbjct: 241 NKSFISSMKKGSLLVNIARGGLLDYNAVVHHLESGHLGGLGIDVAWTEPFDPDDPILKFN 300

Query: 304 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
           NV+I+PHV GVTEHSYRSM+KVVGDVALQLH+G PLTG+E VN
Sbjct: 301 NVIISPHVAGVTEHSYRSMSKVVGDVALQLHSGNPLTGIEIVN 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136053|ref|XP_002327369.1| predicted protein [Populus trichocarpa] gi|222835739|gb|EEE74174.1| predicted protein [Populus trichocarpa]

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 265/343 (77%), Positives = 309/343 (90%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M  +SDK+ITRVLFCGP+FPASH YTKEYLQ YP IQVD VP++ VPDVI+NY++C+VK 
Sbjct: 1   MVGNSDKHITRVLFCGPYFPASHQYTKEYLQKYPFIQVDDVPLAVVPDVISNYNICIVKN 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRL SN ISRA QMKLIMQFGVG+EGVDI+AAT+ GIKVARIPGD TGNAASCAE+ IYL
Sbjct: 61  MRLTSNIISRATQMKLIMQFGVGIEGVDIDAATKYGIKVARIPGDATGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+QK+LG P GETL GKTVFI+GFGNIG++LAKRLRPFGVKIIATK
Sbjct: 121 MLGLLRKQNEMQISIKQKRLGEPAGETLFGKTVFIMGFGNIGIDLAKRLRPFGVKIIATK 180

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243
           RSWA HS+ S QS+   ++NG  D+LVDEKG HEDI++FA ++D+VVCCL +NK+TAGIV
Sbjct: 181 RSWALHSEGSLQSNGFLIENGTNDNLVDEKGSHEDIYKFAGESDIVVCCLRMNKETAGIV 240

Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 303
           NKSF+SSMKKGSLLVNIARGGLL+Y+A+ H+LE GHLGGLGIDVAWTEPFDP+DPILKF 
Sbjct: 241 NKSFISSMKKGSLLVNIARGGLLEYDAVVHHLESGHLGGLGIDVAWTEPFDPDDPILKFN 300

Query: 304 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
           NV+I+PHV GVTEHSYRSM+KVVGDVALQLH+G PLTG+E VN
Sbjct: 301 NVIISPHVAGVTEHSYRSMSKVVGDVALQLHSGNPLTGIEIVN 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561522|ref|XP_002521771.1| phosphoglycerate dehydrogenase, putative [Ricinus communis] gi|223538984|gb|EEF40581.1| phosphoglycerate dehydrogenase, putative [Ricinus communis]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/343 (75%), Positives = 301/343 (87%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           MA  +   ITRVLFCGPHFPASH YTK+YLQ YP IQVD VP++DVP+VIANYH+CV KT
Sbjct: 38  MAGDNSNYITRVLFCGPHFPASHIYTKQYLQKYPFIQVDDVPLNDVPNVIANYHICVSKT 97

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
            R+DS+ ISRA QMKLIMQFGVGLEG++I+AA+RCGIKVARIPGD TGNAASCAE+ IYL
Sbjct: 98  TRIDSSIISRATQMKLIMQFGVGLEGINIDAASRCGIKVARIPGDFTGNAASCAEMAIYL 157

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQN+M+++I+QKKLG P GETLLGKTVFILG+GNIG+ELAKRL+PFGVK+IATK
Sbjct: 158 MLGLLRKQNQMQVSIKQKKLGEPIGETLLGKTVFILGYGNIGIELAKRLQPFGVKVIATK 217

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243
           R W S+  V  Q   L ++NG IDDLVD+KG HEDI EFAS AD++VCCL +NK TAGIV
Sbjct: 218 RKWTSNLHVLHQQKGLPMQNGSIDDLVDKKGSHEDIHEFASNADIIVCCLHMNKDTAGIV 277

Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 303
           NKSF+SSM+KG+LL+N+ARGGLLDY+A+  +L  GHLGGLGIDVAWTEPFDP+DPILKF 
Sbjct: 278 NKSFISSMRKGALLINVARGGLLDYDAVMQHLNSGHLGGLGIDVAWTEPFDPDDPILKFD 337

Query: 304 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
           NVLITPHV GVTEHSYRSMAKVVGDVALQ+HAG P +G+E VN
Sbjct: 338 NVLITPHVAGVTEHSYRSMAKVVGDVALQIHAGAPCSGIEIVN 380

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460279|ref|XP_002282092.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 1 [Vitis vinifera]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/346 (71%), Positives = 296/346 (85%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           +E M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+
Sbjct: 28  IEKMVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCI 87

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
           VK+MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ 
Sbjct: 88  VKSMRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMA 147

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+
Sbjct: 148 IYLMLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRIL 207

Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
           ATKRSWAS S  S QS+     N   D+LVDEKG HE I++FAS AD+VVCCL LN +TA
Sbjct: 208 ATKRSWASQSLNSSQSNGFPTPNDNADELVDEKGGHEAIYDFASSADIVVCCLRLNSETA 267

Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 300
            I++K F+SSM+KG LL+NIARGGL+DYEA+A++LE GHLGGLG DV WTEPF+P+D IL
Sbjct: 268 AIIDKKFISSMRKGGLLINIARGGLMDYEAVAYHLESGHLGGLGTDVTWTEPFNPDDQIL 327

Query: 301 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
           KF+NV++TPHV GVTEHSYRSMAKVVGD+ALQLHAG PLTGLEFVN
Sbjct: 328 KFQNVIVTPHVAGVTEHSYRSMAKVVGDIALQLHAGAPLTGLEFVN 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089431|emb|CBI39250.3| unnamed protein product [Vitis vinifera]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/343 (72%), Positives = 294/343 (85%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+VK+
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+ATK
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243
           RSWAS S  S QS+     N   D+LVDEKG HE I++FAS AD+VVCCL LN +TA I+
Sbjct: 181 RSWASQSLNSSQSNGFPTPNDNADELVDEKGGHEAIYDFASSADIVVCCLRLNSETAAII 240

Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 303
           +K F+SSM+KG LL+NIARGGL+DYEA+A++LE GHLGGLG DV WTEPF+P+D ILKF+
Sbjct: 241 DKKFISSMRKGGLLINIARGGLMDYEAVAYHLESGHLGGLGTDVTWTEPFNPDDQILKFQ 300

Query: 304 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
           NV++TPHV GVTEHSYRSMAKVVGD+ALQLHAG PLTGLEFVN
Sbjct: 301 NVIVTPHVAGVTEHSYRSMAKVVGDIALQLHAGAPLTGLEFVN 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493304|ref|XP_003634565.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like isoform 2 [Vitis vinifera]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 245/343 (71%), Positives = 291/343 (84%), Gaps = 10/343 (2%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M + S+  ITR+LFCGP+FPAS+ YT+EYLQNYP IQVD     DVPDVIA+Y +C+VK+
Sbjct: 1   MVKDSNGCITRLLFCGPNFPASNKYTREYLQNYPFIQVDDSSFEDVPDVIADYDMCIVKS 60

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           MRLDSN ISRAN+MKLIMQFGVGLEGVDINAAT+CGIKVARI    TGNAASCAE+ IYL
Sbjct: 61  MRLDSNIISRANKMKLIMQFGVGLEGVDINAATKCGIKVARIASGETGNAASCAEMAIYL 120

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQ EM+++++QK +G P G+TL GKTVFI+GFGNIG++LAKRLRPFGV+I+ATK
Sbjct: 121 MLGLLRKQKEMQISLKQKIVGEPIGDTLFGKTVFIMGFGNIGIDLAKRLRPFGVRILATK 180

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243
           RSWAS S          + N   D+LVDEKG HE I++FAS AD+VVCCL LN +TA I+
Sbjct: 181 RSWASQS----------LPNDNADELVDEKGGHEAIYDFASSADIVVCCLRLNSETAAII 230

Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 303
           +K F+SSM+KG LL+NIARGGL+DYEA+A++LE GHLGGLG DV WTEPF+P+D ILKF+
Sbjct: 231 DKKFISSMRKGGLLINIARGGLMDYEAVAYHLESGHLGGLGTDVTWTEPFNPDDQILKFQ 290

Query: 304 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
           NV++TPHV GVTEHSYRSMAKVVGD+ALQLHAG PLTGLEFVN
Sbjct: 291 NVIVTPHVAGVTEHSYRSMAKVVGDIALQLHAGAPLTGLEFVN 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449503247|ref|XP_004161907.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like [Cucumis sativus]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 248/346 (71%), Positives = 289/346 (83%), Gaps = 9/346 (2%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           ME     S K + RVLFCG  FP+SHNYT EYL NYP +QVD+VP  DVP VI+NYH+CV
Sbjct: 1   MERTHEDSSKGLIRVLFCGSQFPSSHNYTCEYLLNYPFVQVDIVPCEDVPKVISNYHICV 60

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
           VK M+ D + ISRA+QMKLI+QFGVGL+GVD++AAT+ GIKVARIP  VTGNA SCAE+ 
Sbjct: 61  VKMMKFDFDLISRASQMKLIVQFGVGLDGVDVDAATKRGIKVARIPSGVTGNALSCAEMA 120

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQ EM++A++ K LGVPTG+TLLGKTVFI+GFGNIG+ELAKRLRPFGV+II
Sbjct: 121 IYLMLGLLRKQKEMQIAVDHKMLGVPTGDTLLGKTVFIMGFGNIGLELAKRLRPFGVRII 180

Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
           ATKRSW  +S         +  NG  +DLVD+KG HEDI +FAS AD+VVCCL LN +T 
Sbjct: 181 ATKRSWTENS---------SQLNGASEDLVDQKGAHEDIQKFASIADIVVCCLCLNSETV 231

Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 300
           G+VNKSFLSSM+KGSLLVN+ARG LLDY++  H LE GHLGGLG+DVAWTEPFDPNDPIL
Sbjct: 232 GVVNKSFLSSMRKGSLLVNVARGRLLDYQSTLHSLESGHLGGLGMDVAWTEPFDPNDPIL 291

Query: 301 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
           KF NV+ TPHV GVTEHSYRSMAKV+GDVALQ+HAG+PLTG+EFVN
Sbjct: 292 KFNNVICTPHVAGVTEHSYRSMAKVIGDVALQMHAGSPLTGIEFVN 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455585|ref|XP_003598073.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula] gi|355487121|gb|AES68324.1| D-3-phosphoglycerate dehydrogenase [Medicago truncatula]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/343 (69%), Positives = 290/343 (84%), Gaps = 5/343 (1%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M    ++  TRVLFCGP FP SH YT EYLQN+ SI+VDV+P+ ++P  IANYH+CVVK 
Sbjct: 45  MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 104

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           M+LDSN ISRA QMKLIMQ+GVGLEGVDI+AAT+ GIKVARIP   TGN+ +CAE+ IYL
Sbjct: 105 MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 164

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+Q+KLG P G+TL GKT+FILGFGNIG++LA+RL+PFGVK+IATK
Sbjct: 165 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 224

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243
           RSWAS++Q + +     +    +DDLVD KG HEDI++FA+KAD+V CCL+LN +TAGIV
Sbjct: 225 RSWASYAQNTNE-----LNRNDVDDLVDVKGSHEDIYDFATKADIVACCLNLNSETAGIV 279

Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 303
           N +F+SSMKKG+LLVN+ARG LLDYEA+   LE GHLGGLG DVAWTEPFDP+D ILKFK
Sbjct: 280 NNNFISSMKKGALLVNVARGRLLDYEAVVKNLESGHLGGLGTDVAWTEPFDPDDRILKFK 339

Query: 304 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
           NV++TPH+ GVTEHSYRSMAKVVGDV LQLHAG PLTG+E VN
Sbjct: 340 NVIMTPHIAGVTEHSYRSMAKVVGDVVLQLHAGNPLTGIELVN 382

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510518|gb|AFK43325.1| unknown [Medicago truncatula]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 239/343 (69%), Positives = 289/343 (84%), Gaps = 5/343 (1%)

Query: 4   MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT 63
           M    ++  TRVLFCGP FP SH YT EYLQN+ SI+VDV+P+ ++P  IANYH+CVVK 
Sbjct: 7   MINDVERKTTRVLFCGPQFPCSHLYTTEYLQNHSSIKVDVLPLEEIPKAIANYHVCVVKM 66

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           M+LDSN ISRA QMKLIMQ+GVGLEGVDI+AAT+ GIKVARIP   TGN+ +CAE+ IYL
Sbjct: 67  MKLDSNIISRAVQMKLIMQYGVGLEGVDIDAATKHGIKVARIPSGGTGNSTACAEMAIYL 126

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           MLGLLRKQNEM+++I+Q+KLG P G+TL GKT+FILGFGNIG++LA+RL+PFGVK+IATK
Sbjct: 127 MLGLLRKQNEMQISIQQRKLGEPIGDTLFGKTIFILGFGNIGIDLARRLKPFGVKVIATK 186

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243
           RSWAS++Q + +     +    +DDLVD KG HEDI++FA+KAD+V CCL+LN +TAGIV
Sbjct: 187 RSWASYAQNTNE-----LNRNDVDDLVDVKGSHEDIYDFATKADIVACCLNLNSETAGIV 241

Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 303
           N +F+SSMKKG+LLVN+ARG LLDYEA+   LE GHLGGLG DVAWTEPFDP+D ILKFK
Sbjct: 242 NNNFISSMKKGALLVNVARGRLLDYEAVVKNLESGHLGGLGTDVAWTEPFDPDDRILKFK 301

Query: 304 NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
           NV++TPH+ GVTEHSYRSMAKVVGDV LQLHA  PLTG+E VN
Sbjct: 302 NVIMTPHIAGVTEHSYRSMAKVVGDVVLQLHARNPLTGIELVN 344

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807464|ref|NP_001242647.1| uncharacterized protein LOC100785085 [Glycine max] gi|255645066|gb|ACU23032.1| unknown [Glycine max]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/341 (70%), Positives = 287/341 (84%), Gaps = 5/341 (1%)

Query: 6   RSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMR 65
           + ++K ITRVLFCGP FPASH YT EYLQN+  I+VDV+P+ DVP  IANYH+C+VK MR
Sbjct: 56  KDAEKQITRVLFCGPRFPASHEYTIEYLQNHSHIKVDVLPLEDVPKDIANYHVCIVKNMR 115

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           LDS  ISRA QM+LIMQ+GVGLEGVDI+AAT+ GIKVARIPGDV+GN+ASCAE+ IYLML
Sbjct: 116 LDSEIISRAVQMQLIMQYGVGLEGVDIDAATKHGIKVARIPGDVSGNSASCAEMAIYLML 175

Query: 126 GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
           GLLRKQNE++++I+QKKLG P  ETLLGKT+FILGFGNIG++LAKRL+PFGVK+IA KRS
Sbjct: 176 GLLRKQNELQVSIQQKKLGEPITETLLGKTIFILGFGNIGMDLAKRLQPFGVKVIAIKRS 235

Query: 186 WASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNK 245
           WAS++Q    +S L+  +   +DLVD KG HEDI+EFA KAD+VVCCL+LN++  GI+N 
Sbjct: 236 WASYAQ---HASKLSRNDA--EDLVDVKGSHEDIYEFARKADIVVCCLTLNREAVGIINN 290

Query: 246 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNV 305
            F+  MKKG LLVN+ARGGL+DYEA+ + LE GHLGGLG DVAWTEPF+P+D I KFKNV
Sbjct: 291 KFIFFMKKGGLLVNVARGGLVDYEAVINPLESGHLGGLGTDVAWTEPFNPDDQIFKFKNV 350

Query: 306 LITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
           ++TPHV GVTEH YR MAK VGDV  QLHAG PLTG+E VN
Sbjct: 351 IMTPHVAGVTEHFYRFMAKAVGDVVFQLHAGLPLTGIELVN 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	346
TAIR|locus:2207046	373	AT1G72190 [Arabidopsis thalian	0.965	0.895	0.656	4.7e-119
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.355	0.234	0.328	6.5e-28
UNIPROTKB|G3N069	328	LOC515578 "Uncharacterized pro	0.705	0.743	0.299	5.7e-27
UNIPROTKB|F1RZA1	324	LOC100157017 "Uncharacterized	0.705	0.753	0.292	3.6e-25
TAIR|locus:2185500	384	FDH "formate dehydrogenase" [A	0.644	0.580	0.309	8.7e-24
UNIPROTKB|P0A544	528	serA "D-3-phosphoglycerate deh	0.329	0.215	0.367	1.7e-23
TIGR_CMR|CJE_0970	527	CJE_0970 "D-3-phosphoglycerate	0.369	0.242	0.358	3.4e-23
UNIPROTKB|E1BRZ4	272	LOC420808 "Uncharacterized pro	0.728	0.926	0.287	6.1e-23
UNIPROTKB|Q9UBQ7	328	GRHPR "Glyoxylate reductase/hy	0.343	0.362	0.319	1.1e-22
ZFIN|ZDB-GENE-030131-647	528	phgdh "phosphoglycerate dehydr	0.355	0.232	0.341	1.2e-22

TAIR|locus:2207046 AT1G72190 [Arabidopsis thaliana (taxid:3702)]

 Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
 Identities = 227/346 (65%), Positives = 273/346 (78%)

Query:     1 MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPXXXXXXXXXXXXXXXXANYHLCV 60
             +E +    D ++TRVLFCGPHFP S+N+T+EYLQ YP                 NYH+CV
Sbjct:    40 IERIVEKEDMHVTRVLFCGPHFPDSYNFTREYLQPYPFIKVDVVHYRDVPEVIKNYHICV 99

Query:    61 VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
               TM++DSN ISRA+ +KLIMQ+GVGL+GVDI+AAT+ GIKVARIP + TGNAASC+E+ 
Sbjct:   100 AMTMQMDSNVISRASNIKLIMQYGVGLDGVDIDAATKHGIKVARIPSEGTGNAASCSEMA 159

Query:   121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
             IYLMLGLL+KQNEM++++  + LG PTG+TLLGKTVFILG+GNIG+ELAKRL+PFG ++I
Sbjct:   160 IYLMLGLLKKQNEMQISLRNRLLGEPTGDTLLGKTVFILGYGNIGIELAKRLKPFGSRVI 219

Query:   181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
             ATKR W + S V   S            LVDEKG HEDI+ FA KAD+VV CL LNK+TA
Sbjct:   220 ATKRFWPA-SIVDSDSR-----------LVDEKGSHEDIYTFAGKADIVVVCLRLNKETA 267

Query:   241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 300
              IVNK F+ SMKKG+LLVNIARGGL++YE+    LE GHLGGLGIDVAW+EPFDPNDPIL
Sbjct:   268 EIVNKEFICSMKKGALLVNIARGGLINYESAFQNLESGHLGGLGIDVAWSEPFDPNDPIL 327

Query:   301 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
             KFKNV+ITPHV GVTE+SYRSMAK+VGD+ALQLH G PLTG+EFVN
Sbjct:   328 KFKNVIITPHVAGVTEYSYRSMAKIVGDLALQLHEGLPLTGIEFVN 373

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 200 (75.5 bits), Expect = 6.5e-28, Sum P(2) = 6.5e-28
 Identities = 41/125 (32%), Positives = 69/125 (55%)

Query:   221 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 280
             E    +D+V   L LN +T  ++N+  L  MKK + ++N ARGG++D EA+   L+ G +
Sbjct:   189 ELLQNSDIVTMHLPLNNETRNLINRERLKLMKKSAFIINCARGGIIDEEALYEALKAGEI 248

Query:   281 GGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPL 339
              G  +DV   EP   + P+ +  NV++TPH+G  T+ +  ++A  V  ++A  L  G   
Sbjct:   249 AGAALDVFSKEPLTES-PLFELPNVIVTPHLGASTKEAQINVAIDVAREIASVLKGGLAQ 307

Query:   340 TGLEF 344
               + F
Sbjct:   308 NAVNF 312

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|G3N069 LOC515578 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 80/267 (29%), Positives = 139/267 (52%)

Query:    77 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE-MR 135
             +K++   G GL+ +D+      G+KVA  P  V+   +  A+L + L+L   R+  E  +
Sbjct:    74 LKIVASAGAGLDHLDLGLVASFGVKVANTPHAVS---SPTADLGMALLLAAARRVVEGHQ 130

Query:   136 MAIEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
             +A+       PT   G+ + G T+ I+G G+IG ++A+R R F +KI+   R      ++
Sbjct:   131 LAVSPHTENFPTDYMGQQVTGATLGIIGMGSIGYKIAQRARAFEMKIVYHNRK---RRKL 187

Query:   193 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 252
               + +  A+    +DDL+               +D V+  +SL  QT G++ K  L  MK
Sbjct:   188 EEEEAVGAIYCERLDDLLQW-------------SDFVMLAVSLTPQTQGLIGKRELRLMK 234

Query:   253 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 312
               ++L+NI RG L+D EA+   L+ G +    +DV + EP   + P+L+ KNV++TPH+G
Sbjct:   235 PTAILINIGRGLLVDQEALVEALQTGLIKAAALDVTYPEPLPRDHPLLELKNVILTPHIG 294

Query:   313 GVTEHSYRSMAKVVGDVALQLHAGTPL 339
               T  + R M + + +  L   +G P+
Sbjct:   295 SATHQARRQMMENLVESILASLSGLPI 321

GO:0051287 "NAD binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

UNIPROTKB|F1RZA1 LOC100157017 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 78/267 (29%), Positives = 136/267 (50%)

Query:    77 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE-MR 135
             +++I   GVGL+ +D+      G+KVA  P  V   A   A+L + L+L + R+  E  +
Sbjct:    71 LRVIASSGVGLDHLDLKLIDSFGVKVANTPHAV---ANPTADLGMALLLAVARRVVEGHQ 127

Query:   136 MAIEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
             +AI            GE + G T+ I+G G+IG ++A+R R F +KI+   R   S  + 
Sbjct:   128 LAISPHTENFSANWLGEEVTGATLGIIGMGSIGYKIAQRARAFEMKILYHNRKRRSLEEE 187

Query:   193 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 252
                 +    +   +DDL+ +             +D V+  ++L  Q+ G++ +  LS MK
Sbjct:   188 EAVGATYCER---LDDLLQQ-------------SDFVMLAVNLTPQSQGLIGRRELSLMK 231

Query:   253 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 312
               + L+N+ RG L+D +A+   L+ G +    +DV + EP   + P+L+ KNV +TPH+G
Sbjct:   232 PTATLINVGRGLLVDQDALVEALQTGVIKAAALDVTYPEPLPRDHPLLELKNVTLTPHIG 291

Query:   313 GVTEHSYRSMAKVVGDVALQLHAGTPL 339
               T  + R M + + +  L   +G P+
Sbjct:   292 SATHQARRQMMENLVESILASLSGLPI 318

GO:0051287 "NAD binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

TAIR|locus:2185500 FDH "formate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 78/252 (30%), Positives = 123/252 (48%)

Query:    71 ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
             I +A  +KL++  G+G + +D+ AA   G+ VA + G    N  S AE  +  +L L+R 
Sbjct:   114 IKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGS---NVVSVAEDELMRILILMRN 170

Query:   131 ----QNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
                  N++    E    G+      L GKT+  +G G IG  L +RL+PFG  ++     
Sbjct:   171 FVPGYNQVVKG-EWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLY---- 225

Query:   186 WASHSQVSCQSSALAVKNGIIDDLVDEKGCH--EDIFEFASKADVVVCCLSLNKQTAGIV 243
                H ++            +  +L  E G    ED+ E   K DV+V  + L ++T G+ 
Sbjct:   226 ---HDRLQ-----------MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMF 271

Query:   244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 303
             NK  +  +KKG L+VN ARG +++ +A+   +E GH+GG   DV   +P   + P     
Sbjct:   272 NKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMP 331

Query:   304 NVLITPHVGGVT 315
             N  +TPH  G T
Sbjct:   332 NQAMTPHTSGTT 343

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

UNIPROTKB|P0A544 serA "D-3-phosphoglycerate dehydrogenase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 179 (68.1 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
 Identities = 43/117 (36%), Positives = 66/117 (56%)

Query:   221 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 280
             +  ++AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+
Sbjct:   191 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 250

Query:   281 GGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT-EHSYRSMAKVVGDVALQLHAG 336
                G+DV  TEP   + P+ +   V++TPH+G  T E   R+   V   V L L AG
Sbjct:   251 RAAGLDVFATEPCT-DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL-AG 305

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006564 "L-serine biosynthetic process" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0051289 "protein homotetramerization" evidence=IPI

TIGR_CMR|CJE_0970 CJE_0970 "D-3-phosphoglycerate dehydrogenase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 180 (68.4 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
 Identities = 47/131 (35%), Positives = 69/131 (52%)

Query:   206 IDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 265
             I DL  E+  + D  E   K+D +       K+T G++ K  ++ MK G  L+N ARGGL
Sbjct:   181 ITDLDMEQAKNLD--EILEKSDFITIHTPKTKETNGMIGKQEIAKMKDGIRLINCARGGL 238

Query:   266 LDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKV 325
                EA+   L+ G +  LGIDV   EP   N P+L F+N+ +T H+G  T  S  ++A+ 
Sbjct:   239 YTEEALYEGLKSGKIAWLGIDVFDKEPAT-NHPLLDFENISVTSHLGANTLESQDNIARE 297

Query:   326 VGDVALQLHAG 336
               + AL    G
Sbjct:   298 ACEQALSAARG 308

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|E1BRZ4 LOC420808 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 79/275 (28%), Positives = 135/275 (49%)

Query:    66 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
             +D + +     +K+I   GVG++ +D+      G+K+A  P  V+   +S A+  + L+L
Sbjct:    17 IDKDLLQSLPNLKVIANSGVGMDHLDLKLVASFGVKMANAPCAVS---SSTADTGMALLL 73

Query:   126 GLLRKQNE-MRMAIEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                R+  E   +A+            G  + G T+ I+G G+IG ++A R + F +KI+ 
Sbjct:    74 ASARRLVEGYHVAVSPGMEYCEADFLGVEVTGATLGIIGMGSIGYKIALRAKAFEMKILY 133

Query:   182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
               R+     +     +    K   IDDL+    C         +AD V+  +SL  QT  
Sbjct:   134 HNRTRRKEQEEQAVGALYCEK---IDDLL----C---------QADFVMVVVSLTPQTHK 177

Query:   242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 301
             ++ K  +  MK  + L+NI+RG ++D EA+   L  G +    +DV + EP   + P+LK
Sbjct:   178 LIGKREMELMKPTATLINISRGAVVDQEALVIALRSGVIRAAALDVTYPEPLPRDHPLLK 237

Query:   302 FKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
              KNV+ITPH+G  T+ + R + +   +  L   AG
Sbjct:   238 LKNVIITPHLGIKTDKATRMITEEAVENILAALAG 272

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|Q9UBQ7 GRHPR "Glyoxylate reductase/hydroxypyruvate reductase" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 38/119 (31%), Positives = 64/119 (53%)

Query:   221 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 280
             E A+++D +V   SL   T G+ NK F   MK+ ++ +NI+RG +++ + +   L  G +
Sbjct:   204 ELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKI 263

Query:   281 GGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 339
                G+DV   EP   N P+L  KN +I PH+G  T  +  +M+ +  +  L    G P+
Sbjct:   264 AAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 322

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA;NAS

GO:0008152 "metabolic process" evidence=NAS

GO:0007588 "excretion" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0051287 "NAD binding" evidence=TAS

GO:0008465 "glycerate dehydrogenase activity" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046487 "glyoxylate metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-030131-647 phgdh "phosphoglycerate dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
 Identities = 44/129 (34%), Positives = 75/129 (58%)

Query:    55 NYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNA 113
             NY   +V++  ++ ++ I+  + +K+I + G G++ VD++AAT+ GI V   P   +GN 
Sbjct:    47 NYDGLIVRSATKVTADVINAGSSLKIIGRAGTGVDNVDVDAATKRGIIVMNTP---SGNT 103

Query:   114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKR 171
              S AELT  L++ L R   +  ++++  K       G  L GK + I+G G IG E+A R
Sbjct:   104 LSAAELTCALVMSLSRHIPQAVISMKDGKWDRKKFMGSELYGKVLGIVGLGRIGKEVATR 163

Query:   172 LRPFGVKII 180
             ++ FG+K I
Sbjct:   164 MQSFGMKTI 172

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_410478	SubName- Full=Putative uncharacterized protein; (344 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.1441.1.1	annotation not avaliable (142 aa)			•						0.401

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	346
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	0.0
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	1e-113
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	1e-62
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	1e-62
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	1e-60
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	9e-58
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	2e-57
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	2e-53
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	7e-53
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	8e-52
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	2e-51
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	2e-50
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	2e-50
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	2e-49
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	4e-49
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	4e-46
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	8e-46
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	8e-45
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	9e-45
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	8e-44
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	2e-42
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	3e-41
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	4e-41
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	6e-40
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	2e-39
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	4e-39
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-38
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	4e-38
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	1e-37
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	3e-36
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	5e-36
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	6e-36
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	9e-36
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	3e-35
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	2e-31
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	8e-31
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	8e-30
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	9e-30
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	2e-29
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	2e-29
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	2e-28
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	5e-27
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	5e-26
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	3e-25
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	8e-25
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	4e-24
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	6e-23
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	2e-22
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	4e-22
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	1e-21
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	1e-20
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	3e-18
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	5e-16
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	4e-15
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	7e-15
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	1e-14
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	3e-14
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	4e-14
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	2e-07
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	1e-05
cd01076	227	cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain	7e-05
PRK08306	296	PRK08306, PRK08306, dipicolinate synthase subunit	8e-05
cd01620	317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	1e-04
smart01002	149	smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT	2e-04
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	8e-04
PRK14806	735	PRK14806, PRK14806, bifunctional cyclohexadienyl d	0.001
COG0334	411	COG0334, GdhA, Glutamate dehydrogenase/leucine deh	0.001

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  608 bits (1571), Expect = 0.0
 Identities = 241/346 (69%), Positives = 286/346 (82%), Gaps = 5/346 (1%)

Query: 1   MEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCV 60
           ++     SD   TRVLFCGP FPAS++YT+EYLQ YP IQVD V   DVPDVIANY +CV
Sbjct: 7   IDKRVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICV 66

Query: 61  VKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELT 120
            K MRLD++ I+RA+QMKLIMQFGVGLEGVD++AAT+ GIKVARIP + TGNAASCAE+ 
Sbjct: 67  PKMMRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMA 126

Query: 121 IYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           IYLMLGLLRKQNEM+++++ ++LG P G+TL GKTVFILG+G IG+ELAKRLRPFGVK++
Sbjct: 127 IYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLL 186

Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
           AT+RSW S  +         + NG +DDLVDEKG HEDI+EFA +AD+VV C +L K+TA
Sbjct: 187 ATRRSWTSEPEDGLL-----IPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETA 241

Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 300
           GIVN  FLSSMKKG+LLVNIARGGLLDY+A+   LE GHLGGL IDVAW+EPFDP+DPIL
Sbjct: 242 GIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPIL 301

Query: 301 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
           K  NV+ITPHV GVTE+SYRSM K+VGD ALQLHAG PLTG+EFVN
Sbjct: 302 KHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLTGIEFVN 347

Length = 347

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  330 bits (849), Expect = e-113
 Identities = 123/331 (37%), Positives = 181/331 (54%), Gaps = 25/331 (7%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVP-DVIANYHLCVVKTMR-LDSNCI 71
           +VLF GP FP +    +  L   P ++V      D    ++A+  + V    + +D+  +
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEVVTAAELDEEAALLADADVLVPGMRKVIDAELL 60

Query: 72  SRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQ 131
           + A +++LI Q GVGL+GVD+ AAT  GI VA IPG   GNA S AE  + LML LLR+ 
Sbjct: 61  AAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPG---GNAESVAEHAVMLMLALLRRL 117

Query: 132 NEMRMAIEQKKLGVPTGE---TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
            E    +   + G P G     L GKTV I+G GNIG  +A+RLR FGV++I   R    
Sbjct: 118 PEADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDP 177

Query: 189 HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL 248
                              +  D    + ++ E  +++DVV   + L  +T  ++    L
Sbjct: 178 -----------------EAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEEL 220

Query: 249 SSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT 308
           ++MK G++L+N ARGGL+D EA+   L  GHL G G+DV W EP  P+DP+L+  NV++T
Sbjct: 221 AAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILT 280

Query: 309 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 339
           PH+ GVT+ SY+ MA +V +   +L  G P 
Sbjct: 281 PHIAGVTDESYQRMAAIVAENIARLLRGEPP 311

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  201 bits (514), Expect = 1e-62
 Identities = 89/260 (34%), Positives = 140/260 (53%), Gaps = 26/260 (10%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           +++A ++K I   G G++ +D++AA + GI V  +PG    NA + AE  + L+L LLR+
Sbjct: 58  LAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPG---ANAEAVAEHALGLLLALLRR 114

Query: 131 ----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186
                  +R        G P G  L GKTV I+G G IG  +AKRL+ FG+K++   R+ 
Sbjct: 115 LPRADAAVRRGWGWLWAGFP-GYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRT- 172

Query: 187 ASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKS 246
                          K    +DL         + E  +++DVVV  L L  +T  ++N+ 
Sbjct: 173 --------------RKPEPEEDLGFR---VVSLDELLAQSDVVVLHLPLTPETRHLINEE 215

Query: 247 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 306
            L+ MK G++LVN ARGGL+D +A+   L+ G + G  +DV   EP   + P+L+  NV+
Sbjct: 216 ELALMKPGAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVI 275

Query: 307 ITPHVGGVTEHSYRSMAKVV 326
           +TPH+ G TE +   MA++ 
Sbjct: 276 LTPHIAGYTEEARERMAEIA 295

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  202 bits (515), Expect = 1e-62
 Identities = 90/311 (28%), Positives = 151/311 (48%), Gaps = 30/311 (9%)

Query: 39  IQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRC 98
                +   ++ + +A+    +V    +    ++ A  +K I + G G++ +D+ AAT+ 
Sbjct: 29  PDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKR 88

Query: 99  GIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGK 154
           GI V   PG   GNA S AEL + L+L L R+        R     +K     G  L GK
Sbjct: 89  GILVVNAPG---GNAISVAELVLALLLALARRIPDADASQRRGEWDRKAF--RGTELAGK 143

Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 214
           TV I+G G IG  +AKRL+ FG+K+I                           +     G
Sbjct: 144 TVGIIGLGRIGRAVAKRLKAFGMKVIGYDPY-------------------SPRERAGVDG 184

Query: 215 CH--EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIA 272
               + + E  ++AD++   L L  +T G++N   L+ MK G++L+N ARGG++D +A+ 
Sbjct: 185 VVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALL 244

Query: 273 HYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQ 332
             L+ G + G  +DV   EP   + P+    NV++TPH+GG T+ +   +A++V +  ++
Sbjct: 245 AALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVR 304

Query: 333 LHAGTPLTGLE 343
             AG P+    
Sbjct: 305 YLAGGPVVNNA 315

Length = 324

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  196 bits (501), Expect = 1e-60
 Identities = 84/254 (33%), Positives = 136/254 (53%), Gaps = 23/254 (9%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           ++ A ++K+I ++GVG + +D+ AA + GI V   PG    N+ S AELTI LML L R+
Sbjct: 63  LAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPG---ANSNSVAELTIGLMLALARQ 119

Query: 131 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 190
             +    +       P G  L GKT+ I+G G IG  +A+RL  FG+K++A         
Sbjct: 120 IPQADREVRAGGWDRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPYP---- 175

Query: 191 QVSCQSSALAVKNGI-IDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS 249
                    A ++G+    L       E++ +   ++D +   L L  +T  ++N + L+
Sbjct: 176 -----DEEFAKEHGVEFVSL-------EELLK---ESDFISLHLPLTPETRHLINAAELA 220

Query: 250 SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITP 309
            MK G++L+N ARGGL+D EA+   L+ G + G  +DV   EP   + P+L+  NV++TP
Sbjct: 221 LMKPGAILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTP 280

Query: 310 HVGGVTEHSYRSMA 323
           H+G  T+ +   M 
Sbjct: 281 HIGASTKEAVLRMG 294

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  188 bits (481), Expect = 9e-58
 Identities = 105/333 (31%), Positives = 162/333 (48%), Gaps = 45/333 (13%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 69
           +VL   P          E L+    I+VDV P      +  +IA+    +V++  ++ + 
Sbjct: 1   KVLVTDPIDEEGL----ELLREA-GIEVDVAPGLSEEELLAIIADADALIVRSATKVTAE 55

Query: 70  CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 129
            I  A ++K+I + GVG++ +D+ AAT  GI V   PG    N  S AE TI LML L R
Sbjct: 56  VIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPG---ANTISVAEHTIALMLALAR 112

Query: 130 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
              +   ++     ++KK     G  L GKT+ I+G G IG E+A+R R FG+K++A   
Sbjct: 113 NIPQADASLRAGKWDRKKF---MGVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDP 169

Query: 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE--DIFEFASKADVVVCCLSLNKQTAGI 242
                                I       G  E   + E  ++AD +     L  +T G+
Sbjct: 170 --------------------YISAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGL 209

Query: 243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF 302
           +N   L+ MK G++L+N ARGG++D  A+A  L+ G + G  +DV   EP   + P+L  
Sbjct: 210 INAEELAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGL 269

Query: 303 KNVLITPHVGGVTEHSYRSMAKVVGDVALQLHA 335
            NV++TPH+G  TE +   +A    D A Q+ A
Sbjct: 270 PNVILTPHLGASTEEAQERVAV---DAAEQVLA 299

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  188 bits (481), Expect = 2e-57
 Identities = 84/298 (28%), Positives = 149/298 (50%), Gaps = 31/298 (10%)

Query: 39  IQVDVVPISDVPDVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATR 97
            + D+ P +++ + + +   +      R+D+  + +   +KLI     G + VD+ AA  
Sbjct: 28  YEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKE 87

Query: 98  CGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--QNEMRMA----IEQKKLGVPTGETL 151
            GI V  +PG  T    + AE  + L+L L R+  + + R+               G  L
Sbjct: 88  RGITVTNVPGYST---EAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDL 144

Query: 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 211
            GKT+ I+G G IG  +A+RL+ FG+K++   RS                 N   +  + 
Sbjct: 145 RGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRS----------------PNPEAEKELG 188

Query: 212 EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI 271
            +  + D+ E  +++D++     L  +T  ++N   L+ MK G++LVN ARGGL+D +A+
Sbjct: 189 AR--YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQAL 246

Query: 272 AHYLECGHLGGLGIDVAWTEPFDPNDPILK---FKNVLITPHVGGVTEHSYRSMAKVV 326
              L+ G + G G+DV   EP   + P+L+   F NV++TPH+   TE + ++MA++ 
Sbjct: 247 IDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELA 304

Length = 324

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  177 bits (452), Expect = 2e-53
 Identities = 88/325 (27%), Positives = 148/325 (45%), Gaps = 47/325 (14%)

Query: 36  YPSIQVDVVPISD--VPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 93
              +  +V  + D    + + +  + V   +  +   ++   ++KLI     G++ + + 
Sbjct: 19  LEGLYAEVPELPDEAAEEALEDADVLVGGRLTKEEA-LAALKRLKLIQVPSAGVDHLPL- 76

Query: 94  AATRCGIKVARIPGDVT-----GNAASCAELTIYLMLGLLRK----QNEMRMAI-EQKKL 143
                     R+P  V      GN+ + AE  + L+L L ++     N++R  I   +  
Sbjct: 77  ---------ERLPEGVVVANNHGNSPAVAEHALALILALAKRIVEYDNDLRRGIWHGRAG 127

Query: 144 GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN 203
             P  + L GKTV ILG+G+IG E+A+ L+ FG+++I   RS                  
Sbjct: 128 EEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRS------------------ 169

Query: 204 GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 263
              D+  D  G   D+ E   +ADVVV  L L KQT G++  + L++MK G++LVN+ RG
Sbjct: 170 PKEDEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRG 229

Query: 264 GLLDYEAIAHYLECGHLGGLGIDVAWTEP------FDPNDPILKFKNVLITPHVGGVTEH 317
            ++D EA+   L+   + G  IDV W  P           P  +  NV+++PH  G TE 
Sbjct: 230 PVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTEE 289

Query: 318 SYRSMAKVVGDVALQLHAGTPLTGL 342
           ++R       +   +   G PL  L
Sbjct: 290 TFRRRIDEAAENIRRYLRGEPLLNL 314

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  176 bits (448), Expect = 7e-53
 Identities = 87/290 (30%), Positives = 133/290 (45%), Gaps = 37/290 (12%)

Query: 51  DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGV---GLEGVDINAATRCGIKVARIPG 107
           + + +  + +     +    I  A ++KLI   GV   G E VD+ AAT  GI V   PG
Sbjct: 42  EALKDADILITHFAPVTKKVIEAAPKLKLI---GVCRGGPENVDVEAATERGIPVLNTPG 98

Query: 108 DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK------LGVPTGETLLGKTVFILGF 161
               NA + AE T+ LML   R       A++  +           G  L GKTV I+GF
Sbjct: 99  R---NAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGF 155

Query: 162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE 221
           G IG  +AKRL+ FG +++     +                   I+    +K   E++ +
Sbjct: 156 GAIGRRVAKRLKAFGAEVLVYD-PYVDPE--------------KIEADGVKKVSLEELLK 200

Query: 222 FASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 281
              ++DVV     L  +T G++     + MK  +  +N AR GL+D +A+   LE G +G
Sbjct: 201 ---RSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIG 257

Query: 282 GLGIDVAWTEPFDPNDPILKFKNVLITPHVGG----VTEHSYRSMAKVVG 327
           G  +DV   EP   + P+LK  NV +TPH+ G    V E S   +A+ + 
Sbjct: 258 GAALDVFPEEPLPADHPLLKLDNVTLTPHIAGATRDVAERSPEIIAEELK 307

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  169 bits (430), Expect = 8e-52
 Identities = 62/195 (31%), Positives = 97/195 (49%), Gaps = 23/195 (11%)

Query: 121 IYLMLGLLRKQNEMRMAIEQKKL--GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           + L+L L R+  E    +   +       G  L GKTV I+G G IG  +A+RL+ FG+K
Sbjct: 1   LALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMK 60

Query: 179 IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFEFASKADVVVCCLSLNK 237
           +IA  R                          +  G     + E  +++DVV   L L  
Sbjct: 61  VIAYDRY--------------------PKAEAEALGARYVSLDELLAESDVVSLHLPLTP 100

Query: 238 QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND 297
           +T  ++N   L+ MK G++L+N ARGGL+D +A+   L+ G + G  +DV   EP  P+ 
Sbjct: 101 ETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDH 160

Query: 298 PILKFKNVLITPHVG 312
           P+L+  NV++TPH+ 
Sbjct: 161 PLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  173 bits (440), Expect = 2e-51
 Identities = 90/269 (33%), Positives = 138/269 (51%), Gaps = 24/269 (8%)

Query: 78  KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 137
           KLI + G+G + VD+ AAT  G+ V R+PG V     + AE  + L+L +LRK N+   A
Sbjct: 71  KLIARHGIGYDNVDLKAATEHGVIVTRVPGAV--ERDAVAEHAVALILTVLRKINQASEA 128

Query: 138 IEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRP-FGVKIIATKRSWASHSQVS 193
           +++ K        G  L GKTV I+G+GNIG  +A+ L+  F  K++A     +      
Sbjct: 129 VKEGKWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDPYVSE----- 183

Query: 194 CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKK 253
                +  K      L       E++     ++D++     L ++T  ++N+   S MKK
Sbjct: 184 ---EVIKKKGAKPVSL-------EELLA---ESDIISLHAPLTEETYHMINEKAFSKMKK 230

Query: 254 GSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGG 313
           G +LVN ARG L+D EA+   L+ G + G G+DV   EP   + P+L ++NV+ITPH+G 
Sbjct: 231 GVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIGA 290

Query: 314 VTEHSYRSMAKVVGDVALQLHAGTPLTGL 342
            T  S   M + V D      AG    G+
Sbjct: 291 YTYESLYGMGEKVVDDIEDFLAGKEPKGI 319

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  169 bits (432), Expect = 2e-50
 Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 26/274 (9%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L    T ++D+  +  A  +K+I  + VG + +D++AA   GI V   P  +T    + A
Sbjct: 47  LLCTLTDKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLT---DATA 103

Query: 118 ELTIYLMLGLLRKQNEM-RMAIEQKKLGV-PT---GETLLGKTVFILGFGNIGVELAKRL 172
           +L   L+L   R+  E  R     +  G  PT   G  L GKT+ I+G G IG  +A+R 
Sbjct: 104 DLAFALLLAAARRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRA 163

Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
           + FG+KI+   RS     +       L  +             +  + E  +++D V   
Sbjct: 164 KGFGMKILYHNRS-----RKPEAEEELGAR-------------YVSLDELLAESDFVSLH 205

Query: 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 292
             L  +T  ++N   L+ MK  ++L+N ARGG++D +A+   L+ G + G G+DV   EP
Sbjct: 206 CPLTPETRHLINAERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEP 265

Query: 293 FDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 326
              + P+L   NV++ PH+G  T  +  +MA++ 
Sbjct: 266 LPADHPLLTLPNVVLLPHIGSATVETRTAMAELA 299

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  170 bits (432), Expect = 2e-50
 Identities = 75/324 (23%), Positives = 139/324 (42%), Gaps = 25/324 (7%)

Query: 21  HFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLI 80
             P    + +      P  ++ VV   ++ + +A+    V+         +  A +++ I
Sbjct: 6   LSPLDDEHLERLRAAAPGAELRVVTAEELTEELADAD--VLLGNPPLPELLPAAPRLRWI 63

Query: 81  MQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLRKQNEMRMAIE 139
                G++ +         + +        G      AE  +  ML   RK         
Sbjct: 64  QSTSAGVDALLFPELLERDVVLTN----ARGIFGPPIAEYVLGYMLAFARKLPRYARNQA 119

Query: 140 QKK-LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSA 198
           +++         L GKTV I+G G+IG E+A+R + FG+++I  +RS      V      
Sbjct: 120 ERRWQRRGPVRELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPV------ 173

Query: 199 LAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV 258
                  +D++       +++ E   +AD VV  L L  +T G+ N    ++MK G++L+
Sbjct: 174 -------VDEVYTP----DELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLI 222

Query: 259 NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHS 318
           N+ RG ++D +A+   LE G + G  +DV   EP   + P+    NV+ITPH+ G +   
Sbjct: 223 NVGRGSVVDEDALIEALESGRIAGAALDVFEEEPLPADSPLWDLPNVIITPHISGDSPSY 282

Query: 319 YRSMAKVVGDVALQLHAGTPLTGL 342
              + ++  +   +  AG PL  +
Sbjct: 283 PERVVEIFLENLRRYLAGEPLLNV 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  167 bits (425), Expect = 2e-49
 Identities = 77/279 (27%), Positives = 129/279 (46%), Gaps = 38/279 (13%)

Query: 51  DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG--- 107
           D +   +        + +  I    ++K+I+++GVG++ VD+ AAT  GI V  +P    
Sbjct: 46  DALLVQYA------PVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCT 99

Query: 108 -DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL---GKTVFILGFGN 163
            +V       A+  + L+L L RK   +  A+         G  +    G T+ ++GFG 
Sbjct: 100 EEV-------ADHALALILALARKLPFLDRAVRAGGWDWTVGGPIRRLRGLTLGLVGFGR 152

Query: 164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA 223
           IG  +AKR + FG ++IA                   V +G+           +++    
Sbjct: 153 IGRAVAKRAKAFGFRVIAYDPY---------------VPDGVAALGGVRVVSLDELLA-- 195

Query: 224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 283
            ++DVV     L  +T  +++   L+ MK G+ LVN ARGGL+D  A+A  L+ G + G 
Sbjct: 196 -RSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALARALKSGRIAGA 254

Query: 284 GIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSM 322
            +DV   EP   + P+L   NV++TPH    +E S   +
Sbjct: 255 ALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEESLAEL 293

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  166 bits (422), Expect = 4e-49
 Identities = 94/307 (30%), Positives = 152/307 (49%), Gaps = 35/307 (11%)

Query: 31  EYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVG 86
           E L+     +VD  P+     + + I +Y + +V++  ++    I  A  +K+I + GVG
Sbjct: 15  EKLEE-AGFEVDYEPLIAKEELLEKIKDYDVLIVRSRTKVTKEVIDAAKNLKIIARAGVG 73

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMRMAI-EQK 141
           L+ +D+  A + GIKV   PG    ++ S AEL I LML L R       EM++    +K
Sbjct: 74  LDNIDVEYAKKKGIKVINTPG---ASSNSVAELVIGLMLSLARFIHRANREMKLGKWNKK 130

Query: 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV 201
           K     G  L GKT+ I+GFG IG E+AK  R  G+ +IA                  AV
Sbjct: 131 KY---KGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPY---------PKDEQAV 178

Query: 202 KNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261
           + G+       K     + E    +D +   + L  +T  ++NK  L  MK G++++N +
Sbjct: 179 ELGV-------KTV--SLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTS 229

Query: 262 RGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRS 321
           RGG++D EA+   L+ G L G  +DV   EP  P   +L+  NV +TPH+G  T+ +   
Sbjct: 230 RGGVIDEEALLEALKSGKLAGAALDVFENEP-PPGSKLLELPNVSLTPHIGASTKEAQER 288

Query: 322 MAKVVGD 328
           + + + +
Sbjct: 289 IGEELAN 295

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  159 bits (404), Expect = 4e-46
 Identities = 76/252 (30%), Positives = 118/252 (46%), Gaps = 31/252 (12%)

Query: 78  KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 137
           K+I   G G + +D++A T+ GI+V+  PG V     + A+  ++L+LG LR  +    +
Sbjct: 78  KIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVD---EATADTALFLILGALRNFSRAERS 134

Query: 138 IEQKKLGVPTGETLL-------GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 190
               + G   G   L       GKT+ ILG G IG  +A++   FG+KII   RS     
Sbjct: 135 A---RAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLP-- 189

Query: 191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 250
                   L                +  + E  +++DVV     L   T  ++NK   + 
Sbjct: 190 ------EELEKALATY---------YVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAK 234

Query: 251 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH 310
           MK G ++VN ARG ++D +A+   LE G +   G+DV   EP   N  +LK  NV + PH
Sbjct: 235 MKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPE-VNPGLLKMPNVTLLPH 293

Query: 311 VGGVTEHSYRSM 322
           +G +T  +   M
Sbjct: 294 MGTLTVETQEKM 305

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  162 bits (413), Expect = 8e-46
 Identities = 99/341 (29%), Positives = 163/341 (47%), Gaps = 46/341 (13%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP-------ISDVPDVIANYHLCVVKTM-R 65
           +VL   P          + L++   ++VDV         +  +PD    Y   +V++  +
Sbjct: 1   KVLIADP----ISPDGIDILED-VGVEVDVQTGLSREELLEIIPD----YDALIVRSATK 51

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +    I+ A ++K+I + GVG++ +DI AAT  GI V   P   TGN  S AE  + ++L
Sbjct: 52  VTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAP---TGNTISAAEHALAMLL 108

Query: 126 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
              R   +   ++     ++K      G  L GKT+ ++G G IG  +AKR + FG+K++
Sbjct: 109 AAARNIPQADASLKEGEWDRKAF---MGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVL 165

Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
           A              S   A + G+   LVD      D+ E  ++AD +     L  +T 
Sbjct: 166 AYD---------PYISPERAEQLGVE--LVD------DLDELLARADFITVHTPLTPETR 208

Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 300
           G++    L+ MKKG ++VN ARGG++D  A+   LE GH+    +DV   EP   ++P+ 
Sbjct: 209 GLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP-PTDNPLF 267

Query: 301 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG 341
              NV+ TPH+G  T  +  ++A  V +  L    G P+  
Sbjct: 268 DLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPN 308

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  155 bits (394), Expect = 8e-45
 Identities = 81/284 (28%), Positives = 127/284 (44%), Gaps = 26/284 (9%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L    +  +D   I  A  +K+I  +G G + +D++ A   GI V   P   T      A
Sbjct: 47  LITPLSTPVDKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVST---EPTA 103

Query: 118 ELTIYLMLGLLRKQNEM-RMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  L+L L R+  E  R+      LG       G  L GKT+ I+G G IG  +A+R 
Sbjct: 104 ELTFGLILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRA 163

Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
           + FG+KI+   R    H         L      +D+L+              ++D V   
Sbjct: 164 KAFGMKILYYNR----HRLSEETEKELGATYVDLDELL-------------KESDFVSLH 206

Query: 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 292
                +T  +++ +    MK  + L+N ARG L+D +A+   L+ G + G  +DV   EP
Sbjct: 207 APYTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEP 266

Query: 293 FDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
            + +  + K  NV++TPH+G  T  +  +MAK   D  +    G
Sbjct: 267 -EVSPELKKLDNVILTPHIGNATVEARDAMAKEAADNIISFLEG 309

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  160 bits (407), Expect = 9e-45
 Identities = 99/305 (32%), Positives = 154/305 (50%), Gaps = 54/305 (17%)

Query: 31  EYLQNYPSIQVDVVPISDVP---DVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVG 86
           E L++ P ++VDV    D     ++I +Y   +V++  ++ +  +  A  +K+I + GVG
Sbjct: 15  EILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVG 74

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMA 137
           ++ VD+ AATR GI V   P   TGN  S AE TI LML L R         K  +    
Sbjct: 75  VDNVDVPAATRRGIIVVNAP---TGNTISAAEHTIALMLALARNIPQAHASLKAGKW--- 128

Query: 138 IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA------TKRSWASHSQ 191
            E+KK     G  L GKT+ I+G G IG E+AKR + FG+K+IA       +R       
Sbjct: 129 -ERKKF---MGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER------- 177

Query: 192 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSM 251
                   A + G+  +LV      +++     +AD +     L  +T G++    L+ M
Sbjct: 178 --------AAQLGV--ELVS----LDELLA---RADFITLHTPLTPETRGLIGAEELAKM 220

Query: 252 KKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHV 311
           K G  ++N ARGG++D  A+A  L+ G + G  +DV   EP   + P+ +  NV++TPH+
Sbjct: 221 KPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEP-PTDSPLFELPNVVVTPHL 279

Query: 312 GGVTE 316
           G  T 
Sbjct: 280 GASTA 284

Length = 526

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  152 bits (387), Expect = 8e-44
 Identities = 89/280 (31%), Positives = 138/280 (49%), Gaps = 34/280 (12%)

Query: 60  VVKTMR----LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAAS 115
            +  MR      +  + R   +KL++  G+    +D+ AA   GI V    G  T    +
Sbjct: 49  AIVLMRERTPFPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGGPT----A 104

Query: 116 CAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
            AELT  L+L L R        +R    Q  LG      L GKT+ I+G G IG  +A+ 
Sbjct: 105 TAELTWALILALARNLPEEDAALRAGGWQTTLGT----GLAGKTLGIVGLGRIGARVARI 160

Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
            + FG+++IA    W+S+  ++ + +A A   G+  +    K   E++F     +DVV  
Sbjct: 161 GQAFGMRVIA----WSSN--LTAERAAAA---GV--EAAVSK---EELFA---TSDVVSL 203

Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
            L L+ +T G+V    L+ MK  +LLVN +RG L+D  A+   L  G + G  +DV   E
Sbjct: 204 HLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVE 263

Query: 292 PFDPNDPILKFKNVLITPHVGGVTEHSYRSM-AKVVGDVA 330
           P   + P+    NVL+TPH+G VTE +Y     + V ++A
Sbjct: 264 PLPADHPLRGLPNVLLTPHIGYVTEEAYEGFYGQAVENIA 303

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  148 bits (377), Expect = 2e-42
 Identities = 77/267 (28%), Positives = 126/267 (47%), Gaps = 30/267 (11%)

Query: 64  MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
             L +  I+    ++LI  FGVG +G+D++AA   GI+V   PG         A+L + L
Sbjct: 52  TGLSAALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGV---LTDDVADLAVGL 108

Query: 124 MLGLLRK--QNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
           +L +LR+    + R     +  K   P    + GK V I+G G IG  +A+RL  FG++I
Sbjct: 109 LLAVLRRIPAAD-RFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEI 167

Query: 180 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
                ++                       V  +  +  + E A+++DV+V        T
Sbjct: 168 -----AYHGRRPK---------------PDVPYR-YYASLLELAAESDVLVVACPGGPAT 206

Query: 240 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPI 299
             +VN   L ++    +LVN+ARG ++D  A+   L+ G + G G+DV   EP  P   +
Sbjct: 207 RHLVNAEVLEALGPDGVLVNVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVP-AAL 265

Query: 300 LKFKNVLITPHVGGVTEHSYRSMAKVV 326
           L   NV++TPH+   T  + R+M  +V
Sbjct: 266 LDLDNVVLTPHIASATVETRRAMGDLV 292

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  146 bits (370), Expect = 3e-41
 Identities = 77/257 (29%), Positives = 124/257 (48%), Gaps = 36/257 (14%)

Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
            LD+  +++   +KLI     G   VD+ AA   GI V  +PG  T    S A+ T  L+
Sbjct: 54  VLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYST---DSVAQHTFALL 110

Query: 125 LGLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           L L R        ++  +            P  E L GKT+ I+G+GNIG  +A+  R F
Sbjct: 111 LALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIE-LAGKTLGIIGYGNIGQAVARIARAF 169

Query: 176 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 235
           G+K++  +R                    + +  V      +++     ++DV+     L
Sbjct: 170 GMKVLFAERK---------------GAPPLREGYVS----LDELLA---QSDVISLHCPL 207

Query: 236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 295
             +T  ++N   L+ MK G++L+N ARGGL+D +A+A  L  G + G G+DV   EP   
Sbjct: 208 TPETRNLINAEELAKMKPGAILINTARGGLVDEQALADALNSGKIAGAGLDVLSQEPPRA 267

Query: 296 NDPILKF-KNVLITPHV 311
           ++P+LK   N++ITPH+
Sbjct: 268 DNPLLKAAPNLIITPHI 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  145 bits (369), Expect = 4e-41
 Identities = 79/333 (23%), Positives = 133/333 (39%), Gaps = 40/333 (12%)

Query: 26  HNYTKEYLQNYPSIQV-DVVPISDVPDVIANYH-LCVVKTMRLDSNCISRANQMKLIMQF 83
                E L+    ++V D +   ++ +   +   L V  T  + +  +  A  +K+I + 
Sbjct: 8   RPEELELLKEGGEVEVHDELLTEELLEAAKDADALIVRSTTPVTAEVLEAAPGLKVIARR 67

Query: 84  GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL 143
           GVG++ +D++AAT  GI V  +PG    +  S AELT+ L+L L R+  E   A    + 
Sbjct: 68  GVGVDNIDLDAATERGILVTNVPG---YSTESVAELTVGLILALARRIPE---ADASVRA 121

Query: 144 GV-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSA 198
           G      P G  L GKT+ ++G G IG   A   +  G+ ++                  
Sbjct: 122 GDWKKGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVV------------------ 163

Query: 199 LAVKNGIIDDLVDEKGCHEDIFEFASKA-----DVVVCCLSLNKQTAGIVNKSFLSSMKK 253
            A       +  +E G    + +          D++        +T  I+       +K 
Sbjct: 164 -AYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKD 222

Query: 254 GSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGG 313
              + N   GG+++  A+   LE G        V    P   N P+L   NV++TPH+ G
Sbjct: 223 AVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPP-PVNSPLLDLPNVILTPHIAG 281

Query: 314 VTEHSYRSMAKVVGDVALQLHAGTPLTGLEFVN 346
            TE +  +MA+   +  L    G        VN
Sbjct: 282 ATEEAQENMAEEAAENLLAFLKGGTPPNA--VN 312

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  143 bits (361), Expect = 6e-40
 Identities = 85/292 (29%), Positives = 146/292 (50%), Gaps = 34/292 (11%)

Query: 44  VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA 103
           V +  V DV A   L  + + R+D      A +++++  + VG + +D+  ATR GI V 
Sbjct: 38  VLLEKVRDVDA---LVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVT 94

Query: 104 RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI---EQKKLGVP------TGETLLGK 154
             PG +T    + A+    L+L   R+  E    +   E K+ GV        G  + GK
Sbjct: 95  NTPGVLTE---ATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGK 151

Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 214
           T+ I+GFG IG  +A+R + FG++I+   R+    ++       L  +   +++L+ E  
Sbjct: 152 TIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE-----KELGAEYRPLEELLRE-- 204

Query: 215 CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHY 274
                      +D V   + L K+T  ++N+  L  MK  ++LVN ARG ++D +A+   
Sbjct: 205 -----------SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKA 253

Query: 275 LECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 326
           L+ G + G G+DV   EP+  N+ +   KNV++ PH+G  T  +   MA++V
Sbjct: 254 LKEGWIAGAGLDVFEEEPY-YNEELFSLKNVVLAPHIGSATFEAREGMAELV 304

Length = 333

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  141 bits (357), Expect = 2e-39
 Identities = 95/295 (32%), Positives = 140/295 (47%), Gaps = 44/295 (14%)

Query: 52  VIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 111
           +IAN        M L    I     +K+I     G++ VD+ A    GI V+        
Sbjct: 53  MIAN--------MPLPGEVIEACKNLKMISVAFTGVDHVDLEACKERGITVS-------- 96

Query: 112 NAA-----SCAELTIYLMLGLLRK--QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNI 164
           NAA     + AELTI L + LLR     +  +     K G+  G  L GKTV I+G G I
Sbjct: 97  NAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAGGTKAGL-IGRELAGKTVGIVGTGAI 155

Query: 165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224
           G+ +A+  + FG K++A  RS                K       ++    +  + E  +
Sbjct: 156 GLRVARLFKAFGCKVLAYSRS---------------EKEEAKALGIE----YVSLDELLA 196

Query: 225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG 284
           ++D+V   L LN +T G++ K  L+ MK+ ++L+N ARG ++D EA+A  L  G + G G
Sbjct: 197 ESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNEALADALNEGKIAGAG 256

Query: 285 IDVAWTEPFDPND-PILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTP 338
           IDV   EP  P D P+L   N ++TPHV   TE +    A++V D      AG P
Sbjct: 257 IDVFDMEPPLPADYPLLHAPNTILTPHVAFATEEAMEKRAEIVFDNIEAWLAGKP 311

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  140 bits (354), Expect = 4e-39
 Identities = 93/314 (29%), Positives = 145/314 (46%), Gaps = 57/314 (18%)

Query: 39  IQVDVVPIS---DVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINA 94
            +VD  P     ++  +I  Y   ++++   +D   I +A  +K I + G GLE +D+  
Sbjct: 21  FEVDYDPTISREEILAIIPQYDGLIIRSRFPIDKEFIEKATNLKFIARAGAGLENIDLEY 80

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN----EMRMAI---EQKKLGVPT 147
           A   GI++   P    GN  +  E  + ++L L  K N    E+R  I   E  +     
Sbjct: 81  AKEKGIELFNAP---EGNRDAVGEHALGMLLALFNKLNRADQEVRNGIWDREGNR----- 132

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA----TKRSWASHSQVSCQSSALAVKN 203
           G  L+GKTV I+G+GN+G   AKRL  FG K+IA         A   QVS          
Sbjct: 133 GVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYKNFGDAYAEQVSL--------- 183

Query: 204 GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 263
                        E +F+   +AD++   + L  +T G+VNK F+SS KK    +N ARG
Sbjct: 184 -------------ETLFK---EADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARG 227

Query: 264 GLLDYEAIAHYLECGHLGGLGIDVAWTEPF----DPNDP-----ILKFKNVLITPHVGGV 314
            ++  + +   L+ G + G  +DV   E        N P     ++K   V++TPH+ G 
Sbjct: 228 KVVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGW 287

Query: 315 TEHSYRSMAKVVGD 328
           T  SY  +A+V+ D
Sbjct: 288 TFESYEKIAEVLVD 301

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  138 bits (351), Expect = 2e-38
 Identities = 81/268 (30%), Positives = 120/268 (44%), Gaps = 32/268 (11%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L      R+D++ +    ++K+I     G +  D+ A T  GI V  +P  +T      A
Sbjct: 48  LMAFMPDRIDADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLT---EPTA 104

Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT--GETLLGKTVFILGFGNIGVELAKRLR 173
           ELTI L++GL R        +   K G   P   G  L GKTV ILG G +G  +A+RL 
Sbjct: 105 ELTIGLLIGLGRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLS 164

Query: 174 PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233
            FG  ++     +  H     +  AL ++   +D+L+               +D +V  L
Sbjct: 165 GFGATLLY----YDPHPLDQAEEQALNLRRVELDELL-------------ESSDFLVLAL 207

Query: 234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE-- 291
            L   T  ++N   L+ MK G+LLVN  RG ++D  A+A  L+ GHLGG   DV   E  
Sbjct: 208 PLTPDTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDW 267

Query: 292 -----PFDPNDPILKFK-NVLITPHVGG 313
                P      +L      + TPH+G 
Sbjct: 268 ARPDRPRSIPQELLDQHDRTVFTPHIGS 295

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  137 bits (348), Expect = 4e-38
 Identities = 73/231 (31%), Positives = 100/231 (43%), Gaps = 19/231 (8%)

Query: 113 AASCAELTIYLMLGLLRKQNEMRMAIE-QKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
           A + AE  + L+L  LR+      A              L G TV I+G G IG  L   
Sbjct: 84  AETVAEHALALLLAGLRQLPARARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPL 143

Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
           L PFG K+IA  RS                  G   +  DE    + + E    AD VV 
Sbjct: 144 LAPFGAKVIAVNRS------------------GRPVEGADETVPADRLDEVWPDADHVVL 185

Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
              L  +T  +V+ + L++MK  + LVN+ARG L+D +A+   L  G + G  +DV   E
Sbjct: 186 AAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPE 245

Query: 292 PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342
           P     P+    N LITPHV    E     +A+ V +      AG PL G+
Sbjct: 246 PLPDGHPLWSLPNALITPHVANTPEVIRPLLAERVAENVRAFAAGEPLLGV 296

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  137 bits (347), Expect = 1e-37
 Identities = 88/253 (34%), Positives = 127/253 (50%), Gaps = 31/253 (12%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I++A  +KL +  G+G + VD+ AA   GI VA    +VTG N  S AE  + ++L L+R
Sbjct: 79  IAKAKNLKLALTAGIGSDHVDLQAANDRGITVA----EVTGSNVVSVAEHVVMMILILVR 134

Query: 130 K-QNEMRMAIEQK----KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
                   AIE       +     + L GKTV  +G G IG+ + +RL+PF V ++   R
Sbjct: 135 NYVPGHEQAIEGGWNVADVVKRAYD-LEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDR 193

Query: 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQTAGI 242
                             + + +++  E G   H D+ +  SK DVV     L+ +T G+
Sbjct: 194 ------------------HRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGL 235

Query: 243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF 302
            NK  LS MKKG+ LVN ARG + D EA+A  LE GHL G   DV + +P   + P    
Sbjct: 236 FNKELLSKMKKGAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTM 295

Query: 303 KNVLITPHVGGVT 315
            N  +TPH+ G T
Sbjct: 296 PNNAMTPHISGTT 308

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  132 bits (335), Expect = 3e-36
 Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 41/269 (15%)

Query: 74  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--- 130
           A  +K I + G G+  +D++AA++ GI V   PG    NA + AEL I +ML L R    
Sbjct: 48  APSLKAIARAGAGVNNIDVDAASKRGIVVFNTPG---ANANAVAELVIAMMLALSRNIIQ 104

Query: 131 ---------QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
                     +++   +E+ K      E L GKT+ ++G GNIG  +A      G+K+I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTE-LRGKTLGVIGLGNIGRLVANAALALGMKVIG 163

Query: 182 TKRSWASHSQVSCQSSALAVKNGII--DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
                     +S ++ A  +   +     L       E++    + AD +   + L  +T
Sbjct: 164 YDPY------LSVEA-AWKLSVEVQRVTSL-------EELL---ATADYITLHVPLTDET 206

Query: 240 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPI 299
            G++N   L+ MK G++L+N ARG ++D EA+   L+ G LGG  +       F     +
Sbjct: 207 RGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGG-YVTD-----FPEPALL 260

Query: 300 LKFKNVLITPHVGGVTEHSYRSMAKVVGD 328
               NV+ TPH+G  TE +  + A +   
Sbjct: 261 GHLPNVIATPHLGASTEEAEENCAVMAAR 289

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  132 bits (334), Expect = 5e-36
 Identities = 79/339 (23%), Positives = 137/339 (40%), Gaps = 60/339 (17%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHL-------CVVKTMR 65
            +VL    +        KE L+      VDV  ++ + +      L           T +
Sbjct: 1   MKVLIYD-YRDDELEIEKEILKAGG---VDVEIVTYLLNDDETAELAKGADAILTAFTDK 56

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +D+  + +A  +K I     G + +D++ A   GI V  +P        + AE TI L+L
Sbjct: 57  IDAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPN---AVAEHTIALIL 113

Query: 126 GLLRKQ--NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
            LLR +   + R   +  +     G  L  +TV ++G G IG  +A+R + FG+K+IA  
Sbjct: 114 ALLRNRKYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAY- 172

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK------ADVVVCCLSLNK 237
                                   D        +   ++ S       +D++   + L  
Sbjct: 173 ------------------------DPFRNPELEDKGVKYVSLEELFKNSDIISLHVPLTP 208

Query: 238 QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE------ 291
           +   ++N+     MKKG +++N ARG L+D EA+   L+ G + G G+DV   E      
Sbjct: 209 ENHHMINEEAFKLMKKGVIIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLK 268

Query: 292 -------PFDPNDPILKFKNVLITPHVGGVTEHSYRSMA 323
                      N  + +  NV+ITPH    T+ + ++M 
Sbjct: 269 DLEGEIFKDALNALLGRRPNVIITPHTAFYTDDALKNMV 307

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  132 bits (335), Expect = 6e-36
 Identities = 76/252 (30%), Positives = 115/252 (45%), Gaps = 26/252 (10%)

Query: 94  AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ-KKLGVPT---GE 149
           A    GI V     D   NA   AE T+  +L  LR+      A    +  G PT   G 
Sbjct: 90  AVWERGILVTS-AADA--NAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGR 146

Query: 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL 209
            L G+TV I+GFG IG  + + LRPFG++++     +   ++ +    AL V        
Sbjct: 147 GLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDP-YLPAAEAA----ALGV-------- 193

Query: 210 VDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE 269
             E    +++    +++DVV     L  +T G+++   L+ M+ G+  +N ARG L+D  
Sbjct: 194 --ELVSLDELL---ARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEA 248

Query: 270 AIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDV 329
           A+   L  G L    +DV   EP  P+ P+    NVL+TPH+ G T    R +     D 
Sbjct: 249 ALLAELRSGRLRAA-LDVTDPEPLPPDSPLRTLPNVLLTPHIAGSTGDERRRLGDYALDE 307

Query: 330 ALQLHAGTPLTG 341
             +  AG PL  
Sbjct: 308 LERFLAGEPLLH 319

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  131 bits (331), Expect = 9e-36
 Identities = 78/248 (31%), Positives = 111/248 (44%), Gaps = 36/248 (14%)

Query: 102 VARIPGDVT-GNA-----ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKT 155
           +  +P  VT  NA     AS AEL + L+L  LR       A  + +       +L  + 
Sbjct: 75  LPLLPEGVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSLADRR 134

Query: 156 VFILGFGNIGVELAKRLRPFGVKIIATKRS----WASHSQVSCQSSALAVKNGIIDDLVD 211
           V I+G+G+IG  + +RL PF V++    R+       H                ID+L  
Sbjct: 135 VLIVGYGSIGRAIERRLAPFEVRVTRVARTARPGEQVHG---------------IDELP- 178

Query: 212 EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI 271
                        +ADVVV  + L  +T G+V+  FL+ M  G+LLVN+ARG ++D +A+
Sbjct: 179 ---------ALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDAL 229

Query: 272 AHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVAL 331
              L  G L    +DV   EP  P  P+     VLITPHVGG T         +V     
Sbjct: 230 VAELASGRL-RAALDVTDPEPLPPGHPLWSAPGVLITPHVGGATPAFLPRAYALVRRQLR 288

Query: 332 QLHAGTPL 339
           +  AG PL
Sbjct: 289 RYAAGEPL 296

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  130 bits (329), Expect = 3e-35
 Identities = 71/253 (28%), Positives = 125/253 (49%), Gaps = 32/253 (12%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           +++   +K I  +  G++ + +    + GI +    G    ++   AE  +  +L + + 
Sbjct: 55  LAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSG---IHSIPIAEWIVGYILEIYKG 111

Query: 131 QNEMRMAIEQKK----LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186
              ++ A + +K        +   L GKT+  LG G+IG E+AKRL+ FG+K+I    S 
Sbjct: 112 ---LKKAYKNQKEKKWKMDSSLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTS- 167

Query: 187 ASHSQVSCQSSALAVKNGIIDDLVDEKGCH--EDIFEFASKADVVVCCLSLNKQTAGIVN 244
                            G   +  D+  C+  E++ E   +AD+VV  L L ++T  + +
Sbjct: 168 -----------------GRDVEYFDK--CYPLEELDEVLKEADIVVNVLPLTEETHHLFD 208

Query: 245 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 304
           ++F   MKKG+L +N+ RG  +D +A+   L+   + G  +DV   EP   + P+    N
Sbjct: 209 EAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSPLWDLDN 268

Query: 305 VLITPHVGGVTEH 317
           VLITPH+ GV+EH
Sbjct: 269 VLITPHISGVSEH 281

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score =  121 bits (305), Expect = 2e-31
 Identities = 82/252 (32%), Positives = 121/252 (48%), Gaps = 29/252 (11%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I +A  ++L++  G+G + +D+ AA   G+ VA    +VTG N  S AE  +  +L LLR
Sbjct: 116 IKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVA----EVTGSNVVSVAEDELMRILILLR 171

Query: 130 K-QNEMRMAI--EQKKLGVPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
                    +  E    G+      L GKTV  +G G IG  L +RL+PF   ++   R 
Sbjct: 172 NFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDR- 230

Query: 186 WASHSQVSCQSSALAVKNGIIDDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQTAGIV 243
                              +  +L  E G    ED+     K DVVV    L ++T G+ 
Sbjct: 231 -----------------LKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF 273

Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 303
           NK  ++ MKKG L+VN ARG ++D +A+A     GH+GG G DV + +P   + P     
Sbjct: 274 NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMP 333

Query: 304 NVLITPHVGGVT 315
           N  +TPH+ G T
Sbjct: 334 NHAMTPHISGTT 345

Length = 386

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  118 bits (299), Expect = 8e-31
 Identities = 78/281 (27%), Positives = 126/281 (44%), Gaps = 51/281 (18%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           + V    RLD+  + +  ++KLI     G + +D+ A    GI V  +P    G A + A
Sbjct: 45  ISVFVYSRLDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPD--YGEA-TVA 101

Query: 118 ELTIYLMLGLLRKQNEM-----RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           E    L+L L RK  E      R    Q  L    G  L GKT+ ++G G IG  +A+  
Sbjct: 102 EHAFALLLALSRKLREAIERTRRGDFSQAGL---RGFELAGKTLGVVGTGRIGRRVARIA 158

Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFASKADVVVC 231
           R FG+K++A                   V +   ++L +  G  +  + E   ++D++  
Sbjct: 159 RGFGMKVLAYDV----------------VPD---EELAERLGFRYVSLEELLQESDIISL 199

Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV---- 287
            +    QT  ++N+   + MK G++L+N ARG ++D EA+   L+ G L G G+DV    
Sbjct: 200 HVPYTPQTHHLINRENFALMKPGAVLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQE 259

Query: 288 --------AWTEPFDP--------NDPILKFKNVLITPHVG 312
                    + E   P        +  +L+  NV+ITPHV 
Sbjct: 260 EVLREEAELFREDVSPEDLKKLLADHALLRKPNVIITPHVA 300

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  117 bits (294), Expect = 8e-30
 Identities = 82/253 (32%), Positives = 118/253 (46%), Gaps = 31/253 (12%)

Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAASCAELTIYLMLGLLR 129
           I++A  +KL +  G+G + VD+ AA+  GI VA    +VTG N+ S AE  + ++L L+R
Sbjct: 109 IAKAPNLKLAITAGIGSDHVDLQAASEHGITVA----EVTGSNSISVAEHVVMMILALVR 164

Query: 130 KQNEMRMAIEQKKLG-------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
                  +  Q   G       V     L G TV I+G G IG+ + +RL+PF VK+  T
Sbjct: 165 NYEP---SHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT 221

Query: 183 KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI 242
            R    H         L +              H       S  DVV     L+ +T  +
Sbjct: 222 DR----HRLPEEVEQELGLTY------------HVSFDSLVSVCDVVTIHCPLHPETEHL 265

Query: 243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF 302
            +   LS MK+GS LVN ARG ++D +A+   LE GHL G   DV + +P   + P    
Sbjct: 266 FDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTM 325

Query: 303 KNVLITPHVGGVT 315
               +TPH+ G T
Sbjct: 326 PRNGMTPHISGTT 338

Length = 385

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  115 bits (290), Expect = 9e-30
 Identities = 84/298 (28%), Positives = 136/298 (45%), Gaps = 52/298 (17%)

Query: 39  IQVDVVPIS----DVPDVIANYHLCVV--KTMRLDSNCISRANQMKLIMQFGVGLEGVDI 92
           I+V+ +  +    ++ + + + HL  +  KT +L    +  A ++  I  F +G   VD+
Sbjct: 22  IEVERLKGALDEDELIEALKDVHLLGIRSKT-QLTEEVLEAAPKLLAIGCFCIGTNQVDL 80

Query: 93  NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAIEQKKLGVPTG 148
           +AA + GI V   P     N  S AEL I  ++ L R    +       I  K     TG
Sbjct: 81  DAAAKRGIPVFNAP---FSNTRSVAELVIGEIIMLARRLPDRNAAAHRGIWNK---SATG 134

Query: 149 --ETLLGKTVFILGFGNIGVELAKRLRPFGVKI----IATKRSWASHSQVSCQSSALAVK 202
             E + GKT+ I+G+G+IG +L+      G+++    IA K    +  QVS     LA  
Sbjct: 135 SHE-VRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYDIAEKLPLGNARQVSSLEELLA-- 191

Query: 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262
                                 +AD V   +     T  ++    ++ MKKG++L+N +R
Sbjct: 192 ----------------------EADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASR 229

Query: 263 GGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHVGGVTE 316
           G ++D +A+A  L  GHL G  +DV   EP    +    P+    NV++TPH+GG TE
Sbjct: 230 GTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPHIGGSTE 287

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  114 bits (289), Expect = 2e-29
 Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 39/253 (15%)

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM--RMAIEQKK 142
           +G + +D++AA   GIKV     +VT +  S A+ T+ LML  LRK  ++  R  +    
Sbjct: 77  IGYDHIDLDAAKELGIKV----SNVTYSPNSVADYTVMLMLMALRKYKQIMKRAEVNDYS 132

Query: 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 202
           LG   G  L   TV ++G G IG  + K L  FG KI+A                     
Sbjct: 133 LGGLQGRELRNLTVGVIGTGRIGQAVIKNLSGFGCKILAYDPY----------------P 176

Query: 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262
           N  +    +    + D+     ++D++     L ++T  ++NK  ++ MK G +++N AR
Sbjct: 177 NEEVKKYAE----YVDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTAR 232

Query: 263 GGLLDYEAIAHYLECGHLGGLGIDVAWTE--------PFD--PNDPI---LKFKNVLITP 309
           G L+D EA+   LE G +GG  +DV   E          D   N  +     F NV++TP
Sbjct: 233 GELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAILRSFPNVILTP 292

Query: 310 HVGGVTEHSYRSM 322
           H+   T+ +   M
Sbjct: 293 HMAFYTDQAVSDM 305

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  114 bits (288), Expect = 2e-29
 Identities = 71/271 (26%), Positives = 112/271 (41%), Gaps = 35/271 (12%)

Query: 78  KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 137
           K I   G G++ +  +      + + R+     G A   AE   Y++  +LR   +M   
Sbjct: 60  KAIFSLGAGVDHLLADPDLP-DVPIVRLVDP--GLAQGMAE---YVLAAVLRLHRDMDRY 113

Query: 138 IEQ------KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ 191
             Q      K L            V +LG G +G  +A+RL   G  +    RS      
Sbjct: 114 AAQQRRGVWKPLPQRPAAER---RVGVLGLGELGAAVARRLAALGFPVSGWSRSPKDIEG 170

Query: 192 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSM 251
           V+C            + L            F ++ D++VC L L  +T GI+N   L+ +
Sbjct: 171 VTCFHGE--------EGLDA----------FLAQTDILVCLLPLTPETRGILNAELLARL 212

Query: 252 KKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHV 311
            +G+ L+N+ RG  L    +   L+ GHL G  +DV   EP   + P+ +   V +TPH+
Sbjct: 213 PRGAALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHPLWRHPRVTVTPHI 272

Query: 312 GGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342
             +T     S A  V +   +L AG PL  L
Sbjct: 273 AAIT--DPDSAAAQVAENIRRLEAGEPLPNL 301

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  112 bits (282), Expect = 2e-28
 Identities = 70/269 (26%), Positives = 118/269 (43%), Gaps = 42/269 (15%)

Query: 74  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE 133
              +K I     G++ +D++ A   G+K+  +P     +  + AE  +   L LLR   E
Sbjct: 66  EYGIKQIALRSAGVDMIDLDLAKENGLKITNVP---AYSPRAIAEFAVTQALNLLRNTPE 122

Query: 134 MRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188
           +   + +       G  L+G+     TV I+G G IG   AK  + FG K+IA       
Sbjct: 123 IDRRVAKGDFRWAPG--LIGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKVIAYDP---- 176

Query: 189 HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL 248
                         N  ++  +      ED+     +AD++   + L K+   ++N    
Sbjct: 177 ------------YPNPELEKFLLYYDSLEDLL---KQADIISLHVPLTKENHHLINAEAF 221

Query: 249 SSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE-PFDPN--------DPI 299
           + MK G++LVN ARGGL+D +A+   L+ G + G  +D    E  +           D +
Sbjct: 222 AKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEV 281

Query: 300 LK----FKNVLITPHVGGVTEHSYRSMAK 324
           LK      NVLITPH+   T+ + ++M +
Sbjct: 282 LKELIAMPNVLITPHIAFYTDTAVKNMVE 310

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  108 bits (271), Expect = 5e-27
 Identities = 81/305 (26%), Positives = 130/305 (42%), Gaps = 45/305 (14%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI 105
           +      I+N      K   LD+  ++ A Q+KLI+    G   VD+ AA   GI V   
Sbjct: 43  LRGAQVAISN------KVA-LDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNC 95

Query: 106 PGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTV 156
            G  T    S A+ T+ L+L L  +  + + A+   +         L  P  E L GKT+
Sbjct: 96  QGYGT---PSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVE-LEGKTL 151

Query: 157 FILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH 216
            +LG G +G  +A+    FG++++              +   L +               
Sbjct: 152 GLLGHGELGGAVARLAEAFGMRVLI-----GQLPGRPARPDRLPLD-------------- 192

Query: 217 EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 276
               E   + D +     L + T  ++    L+ MK G+LL+N ARGGL+D +A+A  L 
Sbjct: 193 ----ELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR 248

Query: 277 CGHLGGLGIDVAWTEPFDPNDPIL--KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLH 334
            GHLGG   DV   EP    +P+L      +++TPH    +  + + +   + + A    
Sbjct: 249 SGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFF 308

Query: 335 AGTPL 339
           AG PL
Sbjct: 309 AGKPL 313

Length = 317

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  105 bits (264), Expect = 5e-26
 Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 24/233 (10%)

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
            A + AE  +  +L   ++  E+ +   ++    P G +L G T+ I+GFG IG  LA+R
Sbjct: 95  AAEAIAEFVLAAILAAAKRLPEIWVKGAEQWRREPLG-SLAGSTLGIVGFGAIGQALARR 153

Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH--EDIFEFASKADVV 229
               G++++A +RS                         D  G     D+ E  +++D +
Sbjct: 154 ALALGMRVLALRRS---------------------GRPSDVPGVEAAADLAELFARSDHL 192

Query: 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289
           V    L  +T  ++N   L+  K G  L+NIARGGL+D EA+   L+ G +    +DV  
Sbjct: 193 VLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTD 252

Query: 290 TEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342
            EP     P+     V ++PH   +     R++A    +   +  AG PL  L
Sbjct: 253 PEPLPEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQPLHDL 305

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  103 bits (260), Expect = 3e-25
 Identities = 85/307 (27%), Positives = 132/307 (42%), Gaps = 67/307 (21%)

Query: 65  RLDSNCISR--ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAAS---CAEL 119
            LD+  + +     +KLI     G   VD+ AA   GI V R+P      A S    AE 
Sbjct: 55  DLDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVP------AYSPYAVAEH 108

Query: 120 TIYLMLGLLRK----QNEMRM---AIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
            + L+L L RK     N +R    +++    G+  G  L GKTV ++G G IG   A+ L
Sbjct: 109 AVALLLALNRKIHRAYNRVREGNFSLD----GL-LGFDLHGKTVGVIGTGKIGQAFARIL 163

Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------KA 226
           + FG +++A                          D        +   E+        ++
Sbjct: 164 KGFGCRVLAY-------------------------DPYPNPELAKLGVEYVDLDELLAES 198

Query: 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID 286
           D++     L  +T  ++N   ++ MK G +L+N +RGGL+D +A+   L+ G +GGLG+D
Sbjct: 199 DIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLD 258

Query: 287 VAWTEPF----DPNDPI---------LKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL 333
           V   E      D +D I         L F NVLIT H    T+ +  ++A+   +     
Sbjct: 259 VYEEEAGLFFEDHSDEIIQDDVLARLLSFPNVLITGHQAFFTKEALTNIAETTLENLDDF 318

Query: 334 HAGTPLT 340
            AG PL 
Sbjct: 319 EAGKPLK 325

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  102 bits (256), Expect = 8e-25
 Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 65/298 (21%)

Query: 57  HLCVVKTMRLDSNCISRANQMKLIMQFG--------VGLEGVDINAATRCGIKVARIPGD 108
           H  V+    +  NC +    +++  ++G        VG   +D+ AA   G K+AR+P  
Sbjct: 45  HDAVI----VRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPS- 99

Query: 109 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---GETLLGKTVFILGFGNIG 165
            + NA   AEL   L + L R           K   V      + +   TV I+G G IG
Sbjct: 100 YSPNAI--AELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIG 157

Query: 166 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS- 224
           +  AK  +  G K+I                           D+       +D+  F S 
Sbjct: 158 LTAAKLFKGLGAKVIGY-------------------------DIYPSDAA-KDVVTFVSL 191

Query: 225 -----KADVV-VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG 278
                K+D++ +    +  +   ++NK F+S MK G++L+N ARG L D EAI   LE G
Sbjct: 192 DELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESG 251

Query: 279 HLGGLGIDV------------AWTEPFDP--NDPILKFKNVLITPHVGGVTEHSYRSM 322
            L G G DV               +  DP     +  +  VL+TPH+G  T+ +  +M
Sbjct: 252 KLAGFGTDVLNNEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTPHIGSYTDEALSNM 309

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  100 bits (251), Expect = 4e-24
 Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 28/220 (12%)

Query: 117 AELTI--YLML--GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           AE  I  +L+L    L+     +     ++    + E  +GK V ILG+G+IG + A+  
Sbjct: 93  AEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLA 152

Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGII-------DDLVDEKGCH----EDIFE 221
           +  G+++ A  RS     + + +S      +G I       D  +            + E
Sbjct: 153 QALGMEVYAYTRS----PRPTPES---RKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHE 205

Query: 222 F-ASKADVVVCCLSLNKQTAGIVNK---SFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 277
           F     D++V  L L   T  ++       L+  K+ + + NIARG L+D +A+   LE 
Sbjct: 206 FLRQDLDLLVVSLPLTPATKHLLGAEEFEILA--KRKTFVSNIARGSLVDTDALVAALES 263

Query: 278 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEH 317
           G + G  +DV   EP   + P+    NV+ITPHV   T+ 
Sbjct: 264 GQIRGAALDVTDPEPLPADHPLWSAPNVIITPHVSWQTQE 303

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 96.7 bits (241), Expect = 6e-23
 Identities = 66/208 (31%), Positives = 100/208 (48%), Gaps = 30/208 (14%)

Query: 117 AELTIYLMLGLLRKQNEMRMAIEQKK----LG-----VPTGE--TLLGKTVFILGFGNIG 165
           AE T+ L+L  +R+ +EMR A  + +    LG      P G   TLLG  V I GFG+IG
Sbjct: 96  AEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIG 155

Query: 166 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK 225
             LA  L   G ++    RS                + G    +V E    +++ E   +
Sbjct: 156 QRLAPLLTALGARVTGVARS-------------AGERAGF--PVVAE----DELPELLPE 196

Query: 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGI 285
            DV+V  L     TA  ++   L+++ K + +VN+ RG  +D +A+   LE G LGG  +
Sbjct: 197 TDVLVMILPATPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAAL 256

Query: 286 DVAWTEPFDPNDPILKFKNVLITPHVGG 313
           DV  TEP   + P+    N+++TPH  G
Sbjct: 257 DVTATEPLPASSPLWDAPNLILTPHAAG 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 96.8 bits (242), Expect = 2e-22
 Identities = 75/255 (29%), Positives = 116/255 (45%), Gaps = 59/255 (23%)

Query: 83  FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK 142
           F +G   VD++AA + GI V   P     N  S AEL I  ++ LLR        I +K 
Sbjct: 82  FCIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGEIILLLRG-------IPEKN 131

Query: 143 LGVPTGETL---------LGKTVFILGFGNIGVELAKRLRPFGVKI----IATKRSWASH 189
                G             GKT+ I+G+G+IG +L+      G+++    I  K    + 
Sbjct: 132 AKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNA 191

Query: 190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL----NKQTAGIVNK 245
            QV           G +++L+             +++DVV    SL       T  ++  
Sbjct: 192 RQV-----------GSLEELL-------------AQSDVV----SLHVPETPSTKNMIGA 223

Query: 246 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND----PILK 301
             L+ MK G++L+N +RG ++D +A+A  L+ GHL G  IDV   EP    D    P+  
Sbjct: 224 EELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRG 283

Query: 302 FKNVLITPHVGGVTE 316
             NV++TPH+GG T+
Sbjct: 284 LDNVILTPHIGGSTQ 298

Length = 409

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 94.5 bits (235), Expect = 4e-22
 Identities = 73/306 (23%), Positives = 127/306 (41%), Gaps = 53/306 (17%)

Query: 20  PHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKL 79
           P FP  H +  EY        ++    +D+  VI +      K +      +++  ++KL
Sbjct: 21  PSFP--HEWI-EYDHTSAEQTIERAKDADI--VITS------KVL-FTRETLAQLPKLKL 68

Query: 80  IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGL-------LRKQN 132
           I     G   VD+ AA   GI V  + G  +    +  E  + ++  L        R Q 
Sbjct: 69  IAITATGTNNVDLVAAKELGIAVKNVTGYSS---TTVPEHVLGMIFALKHSLMGWYRDQL 125

Query: 133 EMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189
             R A   K+      P  + + G T+ + G G +G E+ +  +  G+K++  +   AS 
Sbjct: 126 SDRWA-TCKQFCYFDYPITD-VRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV 183

Query: 190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS 249
               C+                         E   +AD+V     L + T  ++N   L+
Sbjct: 184 ----CREGYT------------------PFEEVLKQADIVTLHCPLTETTQNLINAETLA 221

Query: 250 SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL----KFKNV 305
            MK  + L+N  RG L+D +A+   LE G + G  +DV   EP + ++P++    +  N+
Sbjct: 222 LMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNL 281

Query: 306 LITPHV 311
           LITPH+
Sbjct: 282 LITPHI 287

Length = 314

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 70/262 (26%), Positives = 121/262 (46%), Gaps = 46/262 (17%)

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +D   +S+   +KLI     G   VDI  A + GI V  + G  T    S A+ T  ++L
Sbjct: 53  IDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYST---ESVAQHTFAMLL 109

Query: 126 GLLRKQNEMRMAIEQKK---------LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            LL + N     ++  +         +  P GE + GK   I+G G IG  +AK  + FG
Sbjct: 110 SLLGRINYYDRYVKSGEYSESPIFTHISRPLGE-IKGKKWGIIGLGTIGKRVAKIAQAFG 168

Query: 177 VKII----ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
            K++    + K     + +VS            +++L+               +D++   
Sbjct: 169 AKVVYYSTSGKNKNEEYERVS------------LEELL-------------KTSDIISIH 203

Query: 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 292
             LN++T  ++    L  +K G++L+N+ RGG+++ + +A  L+   +   G+DV   EP
Sbjct: 204 APLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEP 262

Query: 293 FDPNDPILKFKN---VLITPHV 311
            + N P+L  KN   +LITPH+
Sbjct: 263 MEKNHPLLSIKNKEKLLITPHI 284

Length = 311

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 90.7 bits (225), Expect = 1e-20
 Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 30/220 (13%)

Query: 100 IKVARIPGDVT--GNAA----SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 153
           I V+ IP +V    NA     S AE    L+L   +   E    ++         + L  
Sbjct: 63  IDVSGIPENVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYN 122

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 213
           K++ ILG+G IG  +A   + FG+ I A  RS+ +    S                    
Sbjct: 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEP--------------- 167

Query: 214 GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH 273
              EDI +   K+D V+  L L  +T G++N   LS  +KG  ++N+AR  ++D   + +
Sbjct: 168 ---EDIMK---KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLN 221

Query: 274 YLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGG 313
           +L   +      DV W EP    +      NV+++PHV G
Sbjct: 222 FLRNHNDKYYLSDVWWNEP-IITETNP--DNVILSPHVAG 258

Length = 303

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score = 84.1 bits (209), Expect = 3e-18
 Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 70/262 (26%)

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + +D +     GI  A  PG    NA S AE   Y++  LL       +A  Q     
Sbjct: 67  GTDHIDTDYLKERGIGFANAPG---CNANSVAE---YVLSALLV------LAQRQ----- 109

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI 205
             G +L GKTV I+G GN+G  LA+RL   G+ ++             C           
Sbjct: 110 --GFSLKGKTVGIVGVGNVGSRLARRLEALGMNVLL------------C----------- 144

Query: 206 IDDLVDEKGCHEDIFEFAS------KADVVVCCLSLNKQ----TAGIVNKSFLSSMKKGS 255
            D    E    E    F S      +AD++   + L +     T  ++++ FL+++K G 
Sbjct: 145 -DPPRAEA---EGDPGFVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQ 200

Query: 256 LLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW-TEPFDPNDPILKFKNVLI-TPHVGG 313
           +L+N +RG ++D +A+   L+ G    + +DV W  EP + +  +L    V I TPH+ G
Sbjct: 201 ILINASRGAVIDNQALLALLQRGKDLRVVLDV-WENEP-EIDLELLDK--VDIATPHIAG 256

Query: 314 V--------TEHSYRSMAKVVG 327
                    TE  Y ++ + +G
Sbjct: 257 YSLEGKARGTEMIYEALCQFLG 278

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score = 77.5 bits (191), Expect = 5e-16
 Identities = 66/269 (24%), Positives = 118/269 (43%), Gaps = 33/269 (12%)

Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           ++D+  + +  +++      VG +  D++A T   I +   P  +T    + A+  + L+
Sbjct: 55  KVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLT---ETVADTLMALV 111

Query: 125 LGLLRKQNEMRMAIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLR-PF 175
           L   R+  E+    E+ K G  T        G  +  KT+ I+G G IG+ LA+R    F
Sbjct: 112 LSTARRVVEV---AERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGF 168

Query: 176 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 235
            + I+   R    H +   + +A   +   +D L+ E             +D V   L L
Sbjct: 169 NMPILYNARR--HHKEAEERFNA---RYCDLDTLLQE-------------SDFVCIILPL 210

Query: 236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 295
             +T  +      + MK  ++ +N  RG ++D  A+   L+ G +   G+DV   EP   
Sbjct: 211 TDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSV 270

Query: 296 NDPILKFKNVLITPHVGGVTEHSYRSMAK 324
           + P+L   NV+  PH+G  T  +  +MA 
Sbjct: 271 DSPLLSLPNVVAVPHIGSATHETRYNMAA 299

Length = 323

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 75.3 bits (185), Expect = 4e-15
 Identities = 69/261 (26%), Positives = 120/261 (45%), Gaps = 40/261 (15%)

Query: 83  FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE----MRMAI 138
             VG   VD+ AA + GI V   PG +T    + AEL   L L   R+  E    MR  +
Sbjct: 93  MAVGYNNVDVEAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGL 149

Query: 139 EQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRL-RPFGVKII------ATK----- 183
            +  L  P    G  L G+TV ++G G IG   A+ +   F + +I      +T+     
Sbjct: 150 YEGWL--PHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFV 207

Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243
            ++    + + +      +   +++++ E             ADV+     L+K T  ++
Sbjct: 208 TAYGQFLKANGEQPVTWKRASSMEEVLRE-------------ADVISLHPVLDKTTYHLI 254

Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF-DPNDPILKF 302
           NK  L+ MKK ++LVN +RG ++D  A+  +L+   +  +G+DV   EP+  P   +   
Sbjct: 255 NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPG--LADM 312

Query: 303 KNVLITPHVGGVTEHSYRSMA 323
           KN ++ PH+   ++ +   MA
Sbjct: 313 KNAVVVPHIASASKWTREGMA 333

Length = 386

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 73.8 bits (181), Expect = 7e-15
 Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 32/217 (14%)

Query: 78  KLIMQFGVGLEGVDIN-AATRCGIKVARIPGDVTG----NAASCAELTIYLMLGLLRKQN 132
           +L+  + +G +  D+  A  R G+    + G        N+    EL++  +   L  Q 
Sbjct: 89  RLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEVQQ 148

Query: 133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
             R+       G P    + GKTV ++G G +G E A+ LR  G +++ T  +  +  Q+
Sbjct: 149 PGRLG------GAPD---VAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQL 199

Query: 193 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN-KSFLSSM 251
                                   E++ E  ++ADV+V    L  + AGI+  +  +  M
Sbjct: 200 EELGGKNV----------------EELEEALAEADVIVTTTLLPGKRAGILVPEELVEQM 243

Query: 252 KKGSLLVNIARGGLLDYEAIAHY-LECGHLGGLGIDV 287
           K GS++VN+A G +   +A+    LE GH      DV
Sbjct: 244 KPGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDV 280

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 65/272 (23%), Positives = 115/272 (42%), Gaps = 45/272 (16%)

Query: 66  LDSNCISRANQM--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
           L        N++  K I Q   G +  D+  AT+  + ++ +P   + +  S AE T+  
Sbjct: 57  LSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVP---SYSPESIAEFTVTQ 113

Query: 124 MLGLLRKQNEMRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRL-RPFGV 177
            + L+R  N+++  +  ++        +L +      V ++G G IG+ +AK   + +G 
Sbjct: 114 AINLVRHFNQIQTKV--REHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGS 171

Query: 178 KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK 237
            ++A                     N      VD K   + I E    AD+V   +   K
Sbjct: 172 DVVAYD----------------PFPNAKAATYVDYK---DTIEEAVEGADIVTLHMPATK 212

Query: 238 QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE-PFDP- 295
               + N       KKG++ VN ARG L+D +A+   L+ G + G  +D    E P  P 
Sbjct: 213 YNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPS 272

Query: 296 -------NDPILK----FKNVLITPHVGGVTE 316
                  NDP+L+     ++V++TPH+   T+
Sbjct: 273 DQRGQTINDPLLESLINREDVILTPHIAFYTD 304

Length = 332

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 72.3 bits (177), Expect = 3e-14
 Identities = 59/263 (22%), Positives = 113/263 (42%), Gaps = 41/263 (15%)

Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK--QNEM 134
           +K I Q   G +  D++ A +  I ++ +P   + +  + AE ++ + L L+R+    E 
Sbjct: 70  IKQIAQRTAGFDMYDLDLAKKHNIVISNVP---SYSPETIAEYSVSIALQLVRRFPDIER 126

Query: 135 RMAIEQKKLGVPTGET-LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS 193
           R+               +   TV I+G G IG   AK    FG  I A   ++ +     
Sbjct: 127 RVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYD-AYPNKDL-- 183

Query: 194 CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKK 253
                L  K+ + + + D              AD++   +  NK++  + +K+    +KK
Sbjct: 184 ---DFLTYKDSVKEAIKD--------------ADIISLHVPANKESYHLFDKAMFDHVKK 226

Query: 254 GSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----------AWTEPFDPNDPIL--- 300
           G++LVN ARG +++   +   +  G L G  ID            WT   D +D  L   
Sbjct: 227 GAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNK-DIDDKTLLEL 285

Query: 301 -KFKNVLITPHVGGVTEHSYRSM 322
            + + +L+TPH+   ++ + +++
Sbjct: 286 IEHERILVTPHIAFFSDEAVQNL 308

Length = 330

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 71.8 bits (176), Expect = 4e-14
 Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 24/189 (12%)

Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 214
           T+ ILG G +G ++A+ L+ +G  +    RS  S   V  QS A                
Sbjct: 138 TIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--QSFAGR-------------- 181

Query: 215 CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHY 274
             E++  F S+  V++  L    +T GI+N+  L  +  G+ L+N+ARG  +  + +   
Sbjct: 182 --EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAA 239

Query: 275 LECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKV--VGDVALQ 332
           L+ G + G  +DV   EP  P  P+ +   V ITPHV  VT    R    V  +     Q
Sbjct: 240 LDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVT----RPAEAVEYISRTIAQ 295

Query: 333 LHAGTPLTG 341
           L  G  + G
Sbjct: 296 LEKGERVCG 304

Length = 312

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 27/172 (15%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID 207
           G +L  +TV I+G GN+G  L  RL   G+K +      A                    
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRG----------------- 153

Query: 208 DLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKSFLSSMKKGSLLVNIARG 263
               ++G    + E   +AD++     L K    +T  + ++  + S+K G++L+N  RG
Sbjct: 154 ----DEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRG 209

Query: 264 GLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 315
            ++D  A+   L  G    + +DV   EP + N  +LK  ++  TPH+ G T
Sbjct: 210 AVVDNTALLTCLNEGQKLSVVLDVWEGEP-ELNVELLKKVDI-GTPHIAGYT 259

Length = 378

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 50/235 (21%)

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG 144
           +G + +D++     GI  +  PG    NA    +   Y++  LL       +A  +    
Sbjct: 67  IGTDHLDLDYFAEAGITWSSAPG---CNARGVVD---YVLGSLLT------LAERE---- 110

Query: 145 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK--RSWASHSQVSCQSSALAVK 202
              G  L  +T  ++G G++G  L + LR  G K++     R  A               
Sbjct: 111 ---GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA--------------- 152

Query: 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNKSFLSSMKKGSLLV 258
                   +  G    +     + DV+     L K+    T  +++++FL+S++ G+ L+
Sbjct: 153 --------EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLI 204

Query: 259 NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGG 313
           N +RG ++D +A+   L  G      +DV   EP    D  L     + TPH+ G
Sbjct: 205 NASRGAVVDNQALREALLSGEDLDAVLDVWEGEP--QIDLELADLCTIATPHIAG 257

Length = 381

>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G  L G  V I GFGN+G   A+ L   G K++A          VS     +   +G+ +
Sbjct: 26  GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVA----------VSDSDGTIYNPDGLDV 75

Query: 207 DDLVDEKGCHEDI 219
             L+  K  H  +
Sbjct: 76  PALLAYKKEHGSV 88

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 227

>gnl|CDD|181371 PRK08306, PRK08306, dipicolinate synthase subunit A; Reviewed

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 36/141 (25%)

Query: 136 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ 195
           MAIE       T  T+ G  V +LGFG  G+ LA+ L+  G  +    R           
Sbjct: 141 MAIEH------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARK---------- 184

Query: 196 SSALAVKNGIIDDLVDEKGCH----EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSM 251
           S+ LA         + E G       ++ E   K D++      N   A ++ K  LS M
Sbjct: 185 SAHLAR--------ITEMGLSPFHLSELAEEVGKIDIIF-----NTIPALVLTKEVLSKM 231

Query: 252 KKGSLLVNIAR--GGLLDYEA 270
              +L++++A   GG  D+E 
Sbjct: 232 PPEALIIDLASKPGG-TDFEY 251

Length = 296

>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 20/108 (18%), Positives = 46/108 (42%), Gaps = 12/108 (11%)

Query: 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 214
            V I+G G +G+  AK  +  G  ++           V           G       +K 
Sbjct: 164 KVLIIGAGVVGLGAAKIAKKLGANVLVYDIKEEKLKGVE--------TLGGSRLRYSQK- 214

Query: 215 CHEDIFEFASKADVVVCCLSLNKQTAGIV-NKSFLSSMKKGSLLVNIA 261
             E++ +   + D+++  + ++   A I+  +  +  MK+G+++V++A
Sbjct: 215 --EELEKELKQTDILINAILVDGPRAPILIMEELVGPMKRGAVIVDLA 260

Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317

>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 18/116 (15%)

Query: 155 TVFILGFGNIG---VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 211
            V ++G G +G      AK L   G ++       A   Q+       ++       L  
Sbjct: 22  KVVVIGAGVVGLGAAATAKGL---GAEVTVLDVRPARLRQLE------SLLGARFTTLYS 72

Query: 212 EKGCHEDIFEFASKADVVVCCLSL-NKQTAGIVNKSFLSSMKKGSLLVNIA--RGG 264
           +    E   E   +AD+V+  + +   +   +V +  + SMK GS++V++A  +GG
Sbjct: 73  QAELLE---EAVKEADLVIGAVLIPGAKAPKLVTREMVKSMKPGSVIVDVAADQGG 125

Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Length = 149

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 53/252 (21%), Positives = 91/252 (36%), Gaps = 66/252 (26%)

Query: 90  VDINAATRCGIKVARIP--GDVTGNAASCAELTIYLMLGLL----RKQ-NEMRMAIEQKK 142
           VDI AA   GI V  I   GD         E  I  ++ LL     KQ  E    +   K
Sbjct: 86  VDIAAARENGITVTGIRDYGD-----EGVVEYVISELIRLLHGFGGKQWKEEPRELTGLK 140

Query: 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 202
           +G             I+G G  G  +A  L  FG  +    R+     +   ++  +   
Sbjct: 141 VG-------------IIGLGTTGQMIADALSFFGADVYYYSRT----RKPDAEAKGIRYL 183

Query: 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262
              +++L+                DV+  CL  N     ++ +     +  G +L N + 
Sbjct: 184 P--LNELLKT-------------VDVICTCLPKNVI---LLGEEEFELLGDGKILFNTSL 225

Query: 263 GGLLDYEAIAHYLE--------CGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGV 314
           G   + EA+  +L+        C   G LG           ++ +L++ NV+ T    G 
Sbjct: 226 GPSFEVEALKKWLKASGYNIFDCDTAGALG-----------DEELLRYPNVICTNKSAGW 274

Query: 315 TEHSYRSMAKVV 326
           T  ++  +++ V
Sbjct: 275 TRQAFERLSQKV 286

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 16/77 (20%)

Query: 156 VFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 213
           V ++G G IG   AK LR  G+  +++A  R          +S  LAV  G+ID      
Sbjct: 6   VVVIGLGLIGGSFAKALRERGLAREVVAVDRR--------AKSLELAVSLGVIDR----- 52

Query: 214 GCHEDIFEFASKADVVV 230
              ED+ E  S ADV+V
Sbjct: 53  -GEEDLAEAVSGADVIV 68

Length = 735

>gnl|CDD|223411 COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G+ L G  V + GFGN+G   A++L   G K++A          VS     +  ++G+ +
Sbjct: 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVA----------VSDSKGGIYDEDGLDV 251

Query: 207 DDLVDEKGCHEDIFEFA 223
           + L++ K     + E+A
Sbjct: 252 EALLELKERRGSVAEYA 268

Length = 411

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	346
PLN02928	347	oxidoreductase family protein	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.97
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.88
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.83
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.81
PLN02494	477	adenosylhomocysteinase	99.67
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.62
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.58
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.53
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.38
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.28
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.27
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.27
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.22
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.2
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.17
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.16
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.14
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.09
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.04
PLN02256	304	arogenate dehydrogenase	98.98
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	98.96
PLN02712	667	arogenate dehydrogenase	98.94
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.92
PRK15059	292	tartronate semialdehyde reductase; Provisional	98.89
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.86
PLN02858	1378	fructose-bisphosphate aldolase	98.85
PLN02858	1378	fructose-bisphosphate aldolase	98.84
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.82
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	98.82
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.8
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.78
PRK08655	437	prephenate dehydrogenase; Provisional	98.78
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.78
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.77
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.77
PRK05225	487	ketol-acid reductoisomerase; Validated	98.76
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.76
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.76
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.75
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.73
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.69
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.67
PRK08818	370	prephenate dehydrogenase; Provisional	98.66
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.65
PRK07417	279	arogenate dehydrogenase; Reviewed	98.64
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.63
PLN02712	667	arogenate dehydrogenase	98.62
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.6
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.59
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.59
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.59
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.57
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.57
PRK06545	359	prephenate dehydrogenase; Validated	98.55
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.53
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.53
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.5
PLN02688	266	pyrroline-5-carboxylate reductase	98.48
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.48
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.47
PRK08507	275	prephenate dehydrogenase; Validated	98.47
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.46
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.46
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.45
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.43
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.43
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.38
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.38
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.38
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.37
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.36
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.36
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.33
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.33
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.32
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.31
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.3
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.27
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.25
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.25
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.24
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.23
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.22
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.18
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.17
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.17
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.16
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.16
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.15
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.14
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.13
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.12
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.12
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.1
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.09
PRK07680	273	late competence protein ComER; Validated	98.07
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.06
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
PLN00203	519	glutamyl-tRNA reductase	98.04
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.98
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	97.97
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.96
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.91
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.9
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.9
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.89
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.89
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.87
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.87
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.85
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.84
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.84
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.84
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.84
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.82
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.81
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.79
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.79
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.78
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.77
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.77
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.77
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.76
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.75
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.74
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.72
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.72
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.72
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.72
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.71
PRK14982	340	acyl-ACP reductase; Provisional	97.71
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.71
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.7
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.7
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.69
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.68
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.67
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.65
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.62
PRK06141	314	ornithine cyclodeaminase; Validated	97.61
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.6
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.55
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.54
PRK07340	304	ornithine cyclodeaminase; Validated	97.52
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.51
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.5
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.5
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.5
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.49
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.49
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.46
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.41
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.37
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.36
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.32
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.29
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.28
PLN02477	410	glutamate dehydrogenase	97.25
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.25
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.23
PRK08618	325	ornithine cyclodeaminase; Validated	97.2
PRK14031	444	glutamate dehydrogenase; Provisional	97.16
PRK09414	445	glutamate dehydrogenase; Provisional	97.15
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.14
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.14
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.11
PRK06046	326	alanine dehydrogenase; Validated	97.09
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.06
PRK08291	330	ectoine utilization protein EutC; Validated	97.06
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.05
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.04
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.03
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.0
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.99
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	96.98
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.97
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.93
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.91
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.9
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.88
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.88
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	96.88
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.88
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.87
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	96.87
PRK06199	379	ornithine cyclodeaminase; Validated	96.86
PRK06823	315	ornithine cyclodeaminase; Validated	96.84
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	96.83
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	96.83
COG5322	351	Predicted dehydrogenase [General function predicti	96.83
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.83
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.81
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.81
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.79
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	96.76
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.76
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	96.73
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.69
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.68
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.68
PTZ00117	319	malate dehydrogenase; Provisional	96.67
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.66
PRK14030	445	glutamate dehydrogenase; Provisional	96.62
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.62
PRK06407	301	ornithine cyclodeaminase; Provisional	96.62
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.6
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.59
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.56
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.56
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.54
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.5
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.48
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.46
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.45
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.45
PRK07589	346	ornithine cyclodeaminase; Validated	96.39
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.37
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.32
PRK12862	763	malic enzyme; Reviewed	96.26
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.25
PRK12861	764	malic enzyme; Reviewed	96.25
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.25
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.24
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.23
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.19
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	96.16
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.09
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.04
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.02
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.0
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	95.99
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.98
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.97
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.95
PRK06444	197	prephenate dehydrogenase; Provisional	95.93
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.91
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.9
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.89
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	95.89
PRK02255	338	putrescine carbamoyltransferase; Provisional	95.85
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.84
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	95.83
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.8
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	95.8
PRK06223	307	malate dehydrogenase; Reviewed	95.73
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.73
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.71
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.68
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.67
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.65
PRK01713	334	ornithine carbamoyltransferase; Provisional	95.64
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.63
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.62
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.6
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.59
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.58
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	95.55
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.5
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.5
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	95.49
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	95.47
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.47
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.46
PRK02102	331	ornithine carbamoyltransferase; Validated	95.42
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.38
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.36
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.35
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.3
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.3
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.29
PRK05086	312	malate dehydrogenase; Provisional	95.28
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.28
PLN02342	348	ornithine carbamoyltransferase	95.27
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.21
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	95.16
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.06
PRK13529	563	malate dehydrogenase; Provisional	95.06
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	95.05
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.04
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.02
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.97
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	94.96
PRK09496	453	trkA potassium transporter peripheral membrane com	94.94
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.89
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	94.88
PRK06270	341	homoserine dehydrogenase; Provisional	94.82
PLN02527	306	aspartate carbamoyltransferase	94.81
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.79
PRK11579	346	putative oxidoreductase; Provisional	94.79
PRK10669	558	putative cation:proton antiport protein; Provision	94.77
PRK14804	311	ornithine carbamoyltransferase; Provisional	94.76
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.76
PRK10637	457	cysG siroheme synthase; Provisional	94.73
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	94.7
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.67
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	94.64
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	94.6
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.59
PRK05562	223	precorrin-2 dehydrogenase; Provisional	94.55
PRK08223	287	hypothetical protein; Validated	94.54
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.51
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.47
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.47
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.38
PRK04284	332	ornithine carbamoyltransferase; Provisional	94.35
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	94.22
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.14
PRK08328	231	hypothetical protein; Provisional	94.13
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.12
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.07
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.01
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	94.0
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.99
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.99
COG0673	342	MviM Predicted dehydrogenases and related proteins	93.97
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.95
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.93
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	93.87
PRK09496	453	trkA potassium transporter peripheral membrane com	93.86
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.82
PRK04148	134	hypothetical protein; Provisional	93.79
PLN00106	323	malate dehydrogenase	93.77
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.76
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	93.71
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	93.7
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.7
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.64
PRK14851	679	hypothetical protein; Provisional	93.63
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.5
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.45
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.42
PTZ00325	321	malate dehydrogenase; Provisional	93.36
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.25
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.22
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.17
PRK10206	344	putative oxidoreductase; Provisional	93.04
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	93.01
PLN02586	360	probable cinnamyl alcohol dehydrogenase	92.99
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	92.89
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	92.87
PTZ00317	559	NADP-dependent malic enzyme; Provisional	92.85
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.76
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.75
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	92.68
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	92.66
PRK07877	722	hypothetical protein; Provisional	92.65
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	92.65
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	92.63
PLN02602	350	lactate dehydrogenase	92.57
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	92.55
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	92.49
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.42
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.42
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	92.31
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	92.24
PRK08192	338	aspartate carbamoyltransferase; Provisional	92.18
PLN03209	576	translocon at the inner envelope of chloroplast su	92.13
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.12
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	91.95
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	91.93
CHL00194	317	ycf39 Ycf39; Provisional	91.93
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	91.93
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	91.88
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	91.87
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	91.85
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	91.77
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	91.76
COG2344	211	AT-rich DNA-binding protein [General function pred	91.75
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.74
PRK07411	390	hypothetical protein; Validated	91.72
COG2910	211	Putative NADH-flavin reductase [General function p	91.64
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	91.44
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.43
PRK06197	306	short chain dehydrogenase; Provisional	91.39
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	91.35
PRK07523	255	gluconate 5-dehydrogenase; Provisional	91.34
PLN02214	342	cinnamoyl-CoA reductase	91.13
PRK08300	302	acetaldehyde dehydrogenase; Validated	91.1
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	91.08
PRK12828	239	short chain dehydrogenase; Provisional	91.02
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	91.01
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.0
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	90.99
PLN02178	375	cinnamyl-alcohol dehydrogenase	90.96
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	90.92
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	90.91
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	90.89
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	90.82
PRK06153	393	hypothetical protein; Provisional	90.79
PLN02695	370	GDP-D-mannose-3',5'-epimerase	90.75
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	90.75
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	90.74
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	90.65
PRK06349	426	homoserine dehydrogenase; Provisional	90.65
PRK07856	252	short chain dehydrogenase; Provisional	90.55
PRK10537	393	voltage-gated potassium channel; Provisional	90.54
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	90.52
TIGR00036	266	dapB dihydrodipicolinate reductase.	90.42
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	90.33
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.28
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	90.27
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	90.26
PRK15116	268	sulfur acceptor protein CsdL; Provisional	90.19
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	90.19
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	90.18
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	90.14
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	90.12
PRK06057	255	short chain dehydrogenase; Provisional	90.09
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	90.01
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	89.91
PLN02427	386	UDP-apiose/xylose synthase	89.91
PRK06841	255	short chain dehydrogenase; Provisional	89.86
PRK06523	260	short chain dehydrogenase; Provisional	89.83
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	89.82
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	89.81
PLN02514	357	cinnamyl-alcohol dehydrogenase	89.8
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	89.76
PRK08703	239	short chain dehydrogenase; Provisional	89.73
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	89.66
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.64
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	89.64
PRK05442	326	malate dehydrogenase; Provisional	89.62
PTZ00245	287	ubiquitin activating enzyme; Provisional	89.6
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	89.46
PRK08265	261	short chain dehydrogenase; Provisional	89.38
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	89.28
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	89.26
PRK06196	315	oxidoreductase; Provisional	89.25
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	89.12
PRK05717	255	oxidoreductase; Validated	89.11
PRK07576	264	short chain dehydrogenase; Provisional	89.01
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	88.91
PRK06179	270	short chain dehydrogenase; Provisional	88.89
PRK08339	263	short chain dehydrogenase; Provisional	88.89
PRK07060	245	short chain dehydrogenase; Provisional	88.86
PRK07774	250	short chain dehydrogenase; Provisional	88.8
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	88.78
PRK15076	431	alpha-galactosidase; Provisional	88.77
PRK06949	258	short chain dehydrogenase; Provisional	88.76
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	88.73
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	88.7
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	88.66
PLN02383	344	aspartate semialdehyde dehydrogenase	88.63
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	88.61
PRK05866	293	short chain dehydrogenase; Provisional	88.54
PRK07831	262	short chain dehydrogenase; Provisional	88.53
PRK14805	302	ornithine carbamoyltransferase; Provisional	88.46
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	88.46
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	88.4
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	88.39
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	88.3
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	88.25
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	88.07
PRK09186	256	flagellin modification protein A; Provisional	88.01
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	88.0
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	87.99
PRK06172	253	short chain dehydrogenase; Provisional	87.98
PLN00112	444	malate dehydrogenase (NADP); Provisional	87.98
PRK05867	253	short chain dehydrogenase; Provisional	87.96
PRK07890	258	short chain dehydrogenase; Provisional	87.95
PRK08862	227	short chain dehydrogenase; Provisional	87.95
PRK06398	258	aldose dehydrogenase; Validated	87.92
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.91
PRK12320	699	hypothetical protein; Provisional	87.89
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	87.83
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	87.75
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	87.75
PRK08264	238	short chain dehydrogenase; Validated	87.73
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	87.67

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=7.5e-76  Score=567.39  Aligned_cols=334  Identities=72%  Similarity=1.175  Sum_probs=289.7

Q ss_pred             CCCCcceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccC
Q 019081            8 SDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL   87 (346)
Q Consensus         8 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~   87 (346)
                      |.+..+||+++.+.++....+.++.++.++...+...+.+++.+.++++|+++++..++++++++++|+||||++.|+|+
T Consensus        14 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~   93 (347)
T PLN02928         14 SDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIMQFGVGL   93 (347)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEEECCccc
Confidence            45556689999887665444556667666655555555667778889999988877789999999999999999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHH
Q 019081           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE  167 (346)
Q Consensus        88 d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~  167 (346)
                      |+||+++|.++||.|+|+|++.++|+.+||||++++||+++|++..+.+.++++.|..+.+.+|.|||+||||+|.||+.
T Consensus        94 d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~  173 (347)
T PLN02928         94 EGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIE  173 (347)
T ss_pred             CcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHH
Confidence            99999999999999999999866689999999999999999999999999999999876678999999999999999999


Q ss_pred             HHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHH
Q 019081          168 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF  247 (346)
Q Consensus       168 vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~  247 (346)
                      +|++|++|||+|++|||+........     +.++...........+...++++++++||+|++|+|+|++|++||+++.
T Consensus       174 vA~~l~afG~~V~~~dr~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~  248 (347)
T PLN02928        174 LAKRLRPFGVKLLATRRSWTSEPEDG-----LLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEF  248 (347)
T ss_pred             HHHHHhhCCCEEEEECCCCChhhhhh-----hccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHH
Confidence            99999999999999999753311100     0000000001111112456899999999999999999999999999999


Q ss_pred             HccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHH
Q 019081          248 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG  327 (346)
Q Consensus       248 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~  327 (346)
                      |++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++|||++|||++|||+||+|.++++++.+.++
T Consensus       249 l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~  328 (347)
T PLN02928        249 LSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVG  328 (347)
T ss_pred             HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCccccC
Q 019081          328 DVALQLHAGTPLTGLEFVN  346 (346)
Q Consensus       328 ~ni~~~~~g~~~~~~~~~~  346 (346)
                      +|+.+|++|+++.|+||||
T Consensus       329 ~nl~~~~~g~~~~~~~~~~  347 (347)
T PLN02928        329 DAALQLHAGRPLTGIEFVN  347 (347)
T ss_pred             HHHHHHHCCCCCCceeecC
Confidence            9999999999999999998

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-76  Score=562.83  Aligned_cols=306  Identities=31%  Similarity=0.513  Sum_probs=268.1

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEE---cCCCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCC
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVD---VVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE   88 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   88 (346)
                      +++++......+.   ....+... ...++.   ..+.+++.+.+.++|++++..+++++++++++|+||||++.|+|+|
T Consensus         3 ~~~vl~~~~~~~~---~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gvd   78 (324)
T COG0111           3 MIKVLVTDPLAPD---ALEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVD   78 (324)
T ss_pred             cceeeccCccCHH---HHHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEcccccc
Confidence            5677777766543   12222222 122222   2234556788899998877778999999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCHHHH
Q 019081           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV  166 (346)
Q Consensus        89 ~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~IG~  166 (346)
                      |||+++++++||.|+|+|++   |+.+||||++++||++.|+++.+++.+++|.|..  ..+.+|+||||||||+|+||+
T Consensus        79 ~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~  155 (324)
T COG0111          79 NIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGR  155 (324)
T ss_pred             ccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHH
Confidence            99999999999999999997   8999999999999999999999999999999986  467899999999999999999


Q ss_pred             HHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHH
Q 019081          167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKS  246 (346)
Q Consensus       167 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~  246 (346)
                      .+|+++++|||+|++||+......                 ..........+|+++|++||||++|+|+|++|+||||++
T Consensus       156 ~va~~l~afgm~v~~~d~~~~~~~-----------------~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~  218 (324)
T COG0111         156 AVAKRLKAFGMKVIGYDPYSPRER-----------------AGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAE  218 (324)
T ss_pred             HHHHHHHhCCCeEEEECCCCchhh-----------------hccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHH
Confidence            999999999999999999543310                 111122235789999999999999999999999999999


Q ss_pred             HHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHH
Q 019081          247 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV  326 (346)
Q Consensus       247 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~  326 (346)
                      .|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|++||||++|||++|||+||+|.+++.++.+++
T Consensus       219 ~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~  298 (324)
T COG0111         219 ELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIV  298 (324)
T ss_pred             HHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCC
Q 019081          327 GDVALQLHAGTPLTG  341 (346)
Q Consensus       327 ~~ni~~~~~g~~~~~  341 (346)
                      ++|+.+|++|.++.|
T Consensus       299 ~~~i~~~l~g~~~~~  313 (324)
T COG0111         299 AENIVRYLAGGPVVN  313 (324)
T ss_pred             HHHHHHHHcCCCCCC
Confidence            999999999998654

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.7e-74  Score=552.72  Aligned_cols=305  Identities=20%  Similarity=0.298  Sum_probs=265.3

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEc-C---CCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCC
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-V---PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE   88 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   88 (346)
                      |||+++.+..+   .. .+.++...++.... .   +.+++.+.+.++|+++++..++++++++++|+||||+++|+|+|
T Consensus         3 ~~vl~~~~~~~---~~-~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~d   78 (323)
T PRK15409          3 PSVILYKALPD---DL-LQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGYD   78 (323)
T ss_pred             ceEEEeCCCCH---HH-HHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceecc
Confidence            68999987532   22 23343322332211 1   12345677899999888767899999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC-----CccccCCCeEEEEecCH
Q 019081           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-----TGETLLGKTVFILGFGN  163 (346)
Q Consensus        89 ~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~-----~~~~l~g~tvgIiG~G~  163 (346)
                      +||+++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|+|...     .+.+|+||||||||+|+
T Consensus        79 ~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~  155 (323)
T PRK15409         79 NFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGR  155 (323)
T ss_pred             cccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccH
Confidence            99999999999999999998   88999999999999999999999999999999632     47899999999999999


Q ss_pred             HHHHHHHHHc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081          164 IGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       164 IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~l  242 (346)
                      ||+.+|++++ +|||+|++||++.....                  .........++++++++||+|++|+|+|++|++|
T Consensus       156 IG~~va~~l~~~fgm~V~~~~~~~~~~~------------------~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~l  217 (323)
T PRK15409        156 IGMALAQRAHFGFNMPILYNARRHHKEA------------------EERFNARYCDLDTLLQESDFVCIILPLTDETHHL  217 (323)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCchhh------------------HHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhc
Confidence            9999999998 99999999998643210                  0000013468999999999999999999999999


Q ss_pred             CCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHH
Q 019081          243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       243 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~  322 (346)
                      ||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|+++|||++|||++|||+||+|.++++++
T Consensus       218 i~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~  297 (323)
T PRK15409        218 FGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNM  297 (323)
T ss_pred             cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCc
Q 019081          323 AKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       323 ~~~~~~ni~~~~~g~~~~~~  342 (346)
                      .+.+++|+.+|++|+++.+.
T Consensus       298 ~~~~~~ni~~~~~g~~~~~~  317 (323)
T PRK15409        298 AACAVDNLIDALQGKVEKNC  317 (323)
T ss_pred             HHHHHHHHHHHHcCCCCCcc
Confidence            99999999999999988754

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=6e-73  Score=541.47  Aligned_cols=302  Identities=26%  Similarity=0.388  Sum_probs=262.5

Q ss_pred             ceEEEeCCCCCCChhHHHHHHh-cCCCeEEEcC-CCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCcc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQ-NYPSIQVDVV-PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV   90 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   90 (346)
                      |||+++....-.......+.++ .++++.+... +.+++.+.++++|+++.+..++++++++++|+||||+++|+|+|+|
T Consensus         1 m~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   80 (317)
T PRK06487          1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV   80 (317)
T ss_pred             CeEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence            3677776532111111122332 3455544332 3356778889999988777789999999999999999999999999


Q ss_pred             chhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--------CccccCCCeEEEEecC
Q 019081           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFG  162 (346)
Q Consensus        91 d~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvgIiG~G  162 (346)
                      |+++|.++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|.|...        .+.+|.||||||||+|
T Consensus        81 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G  157 (317)
T PRK06487         81 DLAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHG  157 (317)
T ss_pred             CHHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCC
Confidence            999999999999999998   78999999999999999999999999999999642        2468999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       163 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~l  242 (346)
                      +||+++|+++++|||+|++||++....                   ..    ...+|++++++||+|++|+|+|++|+||
T Consensus       158 ~IG~~vA~~l~~fgm~V~~~~~~~~~~-------------------~~----~~~~l~ell~~sDiv~l~lPlt~~T~~l  214 (317)
T PRK06487        158 ELGGAVARLAEAFGMRVLIGQLPGRPA-------------------RP----DRLPLDELLPQVDALTLHCPLTEHTRHL  214 (317)
T ss_pred             HHHHHHHHHHhhCCCEEEEECCCCCcc-------------------cc----cccCHHHHHHhCCEEEECCCCChHHhcC
Confidence            999999999999999999999853210                   01    2358999999999999999999999999


Q ss_pred             CCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCC--CCceEEccCCCCCcHHHHH
Q 019081          243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK--FKNVLITPHVGGVTEHSYR  320 (346)
Q Consensus       243 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~--~~nviiTPH~a~~t~~~~~  320 (346)
                      ||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++|||+  +|||++|||+||+|.+++.
T Consensus       215 i~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~  294 (317)
T PRK06487        215 IGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQ  294 (317)
T ss_pred             cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999995  8999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCC
Q 019081          321 SMAKVVGDVALQLHAGTPLT  340 (346)
Q Consensus       321 ~~~~~~~~ni~~~~~g~~~~  340 (346)
                      ++.+.+++|+.+|++|+++.
T Consensus       295 ~~~~~~~~ni~~~~~g~~~~  314 (317)
T PRK06487        295 RIVGQLAENARAFFAGKPLR  314 (317)
T ss_pred             HHHHHHHHHHHHHHcCCCCc
Confidence            99999999999999998764

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=6e-73  Score=540.11  Aligned_cols=299  Identities=22%  Similarity=0.370  Sum_probs=259.6

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEc-CCCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVD   91 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   91 (346)
                      |||+++.+.... . ...+.++....+.... .+.+++.+.++++|+++++..++++++++++|+||||+++|+|+|+||
T Consensus         1 mki~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   78 (311)
T PRK08410          1 MKIVILDAKTLG-D-KDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVD   78 (311)
T ss_pred             CeEEEEecCCCC-h-hhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEccccccccc
Confidence            367777653211 1 1123344332232222 224567778899999888777899999999999999999999999999


Q ss_pred             hhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--------CccccCCCeEEEEecCH
Q 019081           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGN  163 (346)
Q Consensus        92 ~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvgIiG~G~  163 (346)
                      +++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|.|...        .+++|+||||||||+|+
T Consensus        79 ~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~  155 (311)
T PRK08410         79 IEYAKKKGIAVKNVAGY---STESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGT  155 (311)
T ss_pred             HHHHHhCCCEEEcCCCC---CChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCH
Confidence            99999999999999998   88999999999999999999999999999999742        24789999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCC
Q 019081          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV  243 (346)
Q Consensus       164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li  243 (346)
                      ||+++|+++++|||+|++|||+....                 ...    ....++++++++||+|++|+|+|++|+|||
T Consensus       156 IG~~vA~~~~~fgm~V~~~d~~~~~~-----------------~~~----~~~~~l~ell~~sDvv~lh~Plt~~T~~li  214 (311)
T PRK08410        156 IGKRVAKIAQAFGAKVVYYSTSGKNK-----------------NEE----YERVSLEELLKTSDIISIHAPLNEKTKNLI  214 (311)
T ss_pred             HHHHHHHHHhhcCCEEEEECCCcccc-----------------ccC----ceeecHHHHhhcCCEEEEeCCCCchhhccc
Confidence            99999999999999999999864221                 000    124589999999999999999999999999


Q ss_pred             CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCC---CceEEccCCCCCcHHHHH
Q 019081          244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF---KNVLITPHVGGVTEHSYR  320 (346)
Q Consensus       244 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~---~nviiTPH~a~~t~~~~~  320 (346)
                      |++.|++||||++|||+|||++||++||++||++|+|+ |+||||++||+++++|||++   |||++|||+||+|.++..
T Consensus       215 ~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~  293 (311)
T PRK08410        215 AYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARK  293 (311)
T ss_pred             CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHH
Confidence            99999999999999999999999999999999999999 99999999999999999987   899999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCC
Q 019081          321 SMAKVVGDVALQLHAGTP  338 (346)
Q Consensus       321 ~~~~~~~~ni~~~~~g~~  338 (346)
                      ++.+.+++|+.+|++|++
T Consensus       294 ~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        294 TLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             HHHHHHHHHHHHHHcCCC
Confidence            999999999999999864

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-72  Score=537.55  Aligned_cols=269  Identities=21%  Similarity=0.333  Sum_probs=248.0

Q ss_pred             CCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHH
Q 019081           45 PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM  124 (346)
Q Consensus        45 ~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~  124 (346)
                      +.+++.+.++++|+++++..++++++++++|+||||+++|+|+|+||+++|.++||.|+|+||+   |+.+||||++++|
T Consensus        34 ~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~  110 (314)
T PRK06932         34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMI  110 (314)
T ss_pred             ChHHHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHH
Confidence            3466778889999888777789999999999999999999999999999999999999999998   7899999999999


Q ss_pred             HHHHHhHHHHHHHHHhcccCCC--------CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccccc
Q 019081          125 LGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS  196 (346)
Q Consensus       125 l~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~  196 (346)
                      |++.|++..+++.++++.|...        .+.+|+||||||||+|.||+++|+++++|||+|++||++....       
T Consensus       111 l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~-------  183 (314)
T PRK06932        111 FALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV-------  183 (314)
T ss_pred             HHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc-------
Confidence            9999999999999999999642        3468999999999999999999999999999999999753210       


Q ss_pred             chhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          197 SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                                  . .  ....+|++++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||+
T Consensus       184 ------------~-~--~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~  248 (314)
T PRK06932        184 ------------C-R--EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE  248 (314)
T ss_pred             ------------c-c--cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence                        0 0  123589999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCeEEEEecCCCCCCCCCCCCC----CCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 019081          277 CGHLGGLGIDVAWTEPFDPNDPIL----KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTP  338 (346)
Q Consensus       277 ~g~i~ga~lDV~~~EPl~~~~pL~----~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~  338 (346)
                      +|+|+||+||||++||+++++|||    .+|||++|||+||+|.++++++.+.+++|+.+|++|.+
T Consensus       249 ~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        249 NGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             cCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999    49999999999999999999999999999999998753

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=3.7e-71  Score=527.66  Aligned_cols=273  Identities=30%  Similarity=0.474  Sum_probs=251.6

Q ss_pred             CcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHH
Q 019081           48 DVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG  126 (346)
Q Consensus        48 ~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~  126 (346)
                      ++.+..+++|++++. ..++++++++++|+||+|+..|+||||||+++|+++||.|+|+|++   ++.+||||++++||+
T Consensus        37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa  113 (324)
T COG1052          37 ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILA  113 (324)
T ss_pred             HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHH
Confidence            346778999998886 7899999999999999999999999999999999999999999999   669999999999999


Q ss_pred             HHHhHHHHHHHHHhcccCC------CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhh
Q 019081          127 LLRKQNEMRMAIEQKKLGV------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA  200 (346)
Q Consensus       127 ~~R~~~~~~~~~~~~~~~~------~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~  200 (346)
                      +.|++.+.++.+|+|.|..      ..+.+++|||+||||+|+||+++|+++++|||+|++|||+..+. .         
T Consensus       114 ~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~-~---------  183 (324)
T COG1052         114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPE-A---------  183 (324)
T ss_pred             HhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChH-H---------
Confidence            9999999999999999864      45789999999999999999999999999999999999976421 0         


Q ss_pred             hcccccccccccc-CCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC
Q 019081          201 VKNGIIDDLVDEK-GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH  279 (346)
Q Consensus       201 ~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~  279 (346)
                               .... ..+.++++++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+
T Consensus       184 ---------~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~  254 (324)
T COG1052         184 ---------EKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGK  254 (324)
T ss_pred             ---------HhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC
Confidence                     0111 134569999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecCCCCCCCCCCCCCCCCc---eEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          280 LGGLGIDVAWTEPFDPNDPILKFKN---VLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       280 i~ga~lDV~~~EPl~~~~pL~~~~n---viiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      |+|||||||+.||.+.++||+.++|   |++|||+|++|.+++.+|++.+++|+..|++|+.+.+.
T Consensus       255 i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~  320 (324)
T COG1052         255 IAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNE  320 (324)
T ss_pred             cceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999988999998877   99999999999999999999999999999999988764

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=4.1e-70  Score=525.20  Aligned_cols=303  Identities=27%  Similarity=0.434  Sum_probs=262.4

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEc----CCCCCcccccCcceEEEEeC-CCCCHHHHhcCCCCeEEEEcCccC
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGL   87 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~   87 (346)
                      +||+++.+..+   ... +.++....+.+..    .+.+++.+.++++|+++++. .++++++++++|+||||+++|+|+
T Consensus         3 ~kil~~~~~~~---~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~   78 (333)
T PRK13243          3 PKVFITREIPE---NGI-EMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY   78 (333)
T ss_pred             ceEEEECCCCH---HHH-HHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence            67888865422   222 2333321232221    12344667789999988753 589999999999999999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC---------CccccCCCeEEE
Q 019081           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVFI  158 (346)
Q Consensus        88 d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~---------~~~~l~g~tvgI  158 (346)
                      |+||+++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.+++|.|...         .+.+|+||||||
T Consensus        79 d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI  155 (333)
T PRK13243         79 DNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI  155 (333)
T ss_pred             cccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence            999999999999999999998   88999999999999999999999999999999631         367999999999


Q ss_pred             EecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCc
Q 019081          159 LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNK  237 (346)
Q Consensus       159 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~  237 (346)
                      ||+|.||+.+|+++++|||+|++||++.....                   ....+ ...++++++++||+|++|+|+|+
T Consensus       156 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-------------------~~~~~~~~~~l~ell~~aDiV~l~lP~t~  216 (333)
T PRK13243        156 IGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-------------------EKELGAEYRPLEELLRESDFVSLHVPLTK  216 (333)
T ss_pred             ECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-------------------HHHcCCEecCHHHHHhhCCEEEEeCCCCh
Confidence            99999999999999999999999998653210                   00111 24589999999999999999999


Q ss_pred             cccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHH
Q 019081          238 QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEH  317 (346)
Q Consensus       238 ~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~  317 (346)
                      +|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||+|.+
T Consensus       217 ~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e  295 (333)
T PRK13243        217 ETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFE  295 (333)
T ss_pred             HHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHH
Confidence            999999999999999999999999999999999999999999999999999999997 8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          318 SYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       318 ~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      +..++.+.+++|+.+|++|+++.|.
T Consensus       296 ~~~~~~~~~~~ni~~~~~g~~~~~~  320 (333)
T PRK13243        296 AREGMAELVAENLIAFKRGEVPPTL  320 (333)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            9999999999999999999988653

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-69  Score=532.66  Aligned_cols=308  Identities=25%  Similarity=0.348  Sum_probs=266.4

Q ss_pred             CCCCCcceEEEeCCCCCCChhHHHHHHhcCCCe-EEEc----CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEE
Q 019081            7 SSDKNITRVLFCGPHFPASHNYTKEYLQNYPSI-QVDV----VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLI   80 (346)
Q Consensus         7 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I   80 (346)
                      |-.+.||||+++.+..+.    ..+.++.. ++ ++..    .+.+++.+.++++|+++++ ..++++++++++|+||||
T Consensus         5 ~~~~~~~~ili~~~~~~~----~~~~l~~~-~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I   79 (409)
T PRK11790          5 SLPKDKIKFLLLEGVHQS----AVEVLRAA-GYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAI   79 (409)
T ss_pred             CCCCCCeEEEEECCCCHH----HHHHHHhc-CCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEE
Confidence            445667899998654321    22334332 22 3322    2334666788999988765 458999999999999999


Q ss_pred             EEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--CccccCCCeEEE
Q 019081           81 MQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFI  158 (346)
Q Consensus        81 ~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~--~~~~l~g~tvgI  158 (346)
                      +++|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|+|...  .+.+|.||||||
T Consensus        80 ~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGI  156 (409)
T PRK11790         80 GCFCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGI  156 (409)
T ss_pred             EECceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEE
Confidence            9999999999999999999999999998   88999999999999999999999999999999753  478999999999


Q ss_pred             EecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCcc
Q 019081          159 LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ  238 (346)
Q Consensus       159 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~  238 (346)
                      ||+|+||+++|+++++|||+|++||++.....                 ...   ....++++++++||+|++|||+|++
T Consensus       157 iG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~-----------------~~~---~~~~~l~ell~~sDiVslh~Plt~~  216 (409)
T PRK11790        157 VGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL-----------------GNA---RQVGSLEELLAQSDVVSLHVPETPS  216 (409)
T ss_pred             ECCCHHHHHHHHHHHHCCCEEEEECCCccccc-----------------CCc---eecCCHHHHHhhCCEEEEcCCCChH
Confidence            99999999999999999999999998532100                 000   0135899999999999999999999


Q ss_pred             ccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCC----CCCCCCCCceEEccCCCCC
Q 019081          239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP----NDPILKFKNVLITPHVGGV  314 (346)
Q Consensus       239 T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~----~~pL~~~~nviiTPH~a~~  314 (346)
                      |+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.    ++|||++|||++|||+||+
T Consensus       217 T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~  296 (409)
T PRK11790        217 TKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGS  296 (409)
T ss_pred             HhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCC
Confidence            999999999999999999999999999999999999999999999999999999976    4799999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          315 TEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       315 t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      |.++..++.+.+++|+.+|++|+++.+.
T Consensus       297 t~ea~~~~~~~~~~nl~~~~~~~~~~~~  324 (409)
T PRK11790        297 TQEAQENIGLEVAGKLVKYSDNGSTLSA  324 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence            9999999999999999999999887653

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=3e-69  Score=524.75  Aligned_cols=278  Identities=31%  Similarity=0.460  Sum_probs=253.2

Q ss_pred             CCcccccCcceEEEEeC---CCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHH
Q 019081           47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (346)
Q Consensus        47 ~~~~~~~~~~d~~i~~~---~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~  123 (346)
                      +++.+.++++|++|+..   .++++++|+++|+||||+++|+|+||||+++|.++||.|+|+||+   |+.+||||++++
T Consensus        89 ~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~l  165 (386)
T PLN03139         89 CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMR  165 (386)
T ss_pred             HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHH
Confidence            35667889999988753   369999999999999999999999999999999999999999998   889999999999


Q ss_pred             HHHHHHhHHHHHHHHHhcccCC----CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchh
Q 019081          124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  199 (346)
Q Consensus       124 ~l~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~  199 (346)
                      ||++.|++..+++.+++|.|..    ..+.+|.||||||||+|+||+++|+++++|||+|++||++.....         
T Consensus       166 iL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~---------  236 (386)
T PLN03139        166 ILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE---------  236 (386)
T ss_pred             HHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh---------
Confidence            9999999999999999999963    246799999999999999999999999999999999998753210         


Q ss_pred             hhccccccccccccC--CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          200 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       200 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                               .....+  ...++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++
T Consensus       237 ---------~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s  307 (386)
T PLN03139        237 ---------LEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS  307 (386)
T ss_pred             ---------hHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence                     011111  235899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 019081          278 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFV  345 (346)
Q Consensus       278 g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~~~~  345 (346)
                      |+|+||+||||++||+|++||||.+|||++|||+||.|.+++.++.+.+++|+.+|++|+++...++|
T Consensus       308 G~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~~~~i  375 (386)
T PLN03139        308 GHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQNYI  375 (386)
T ss_pred             CCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCCccee
Confidence            99999999999999999999999999999999999999999999999999999999999987665544

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=6.5e-69  Score=522.70  Aligned_cols=276  Identities=30%  Similarity=0.454  Sum_probs=253.0

Q ss_pred             CCcccccCcceEEEEe---CCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHH
Q 019081           47 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (346)
Q Consensus        47 ~~~~~~~~~~d~~i~~---~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~  123 (346)
                      +++.+.++++|++|+.   ..++++++++++|+||||+++|+|+|+||+++|+++||.|+|+||+   |+.+||||++++
T Consensus        82 ~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l  158 (385)
T PRK07574         82 SDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMM  158 (385)
T ss_pred             HHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHH
Confidence            4567788999998874   3479999999999999999999999999999999999999999997   889999999999


Q ss_pred             HHHHHHhHHHHHHHHHhcccCCC----CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchh
Q 019081          124 MLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  199 (346)
Q Consensus       124 ~l~~~R~~~~~~~~~~~~~~~~~----~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~  199 (346)
                      ||+++|++..+++.++++.|...    .+.+|.|+||||||+|+||+.+|++|++|||+|++|||+.....         
T Consensus       159 ~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~---------  229 (385)
T PRK07574        159 ILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEE---------  229 (385)
T ss_pred             HHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchh---------
Confidence            99999999999999999999742    46789999999999999999999999999999999998753210         


Q ss_pred             hhccccccccccccC--CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          200 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       200 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                               .....+  ...++++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||++||++
T Consensus       230 ---------~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s  300 (385)
T PRK07574        230 ---------VEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES  300 (385)
T ss_pred             ---------hHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence                     000111  236899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Q 019081          278 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLE  343 (346)
Q Consensus       278 g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~~  343 (346)
                      |+|+||+||||++||+|++||||++|||++|||+||+|.++++++.+.+++|+.+|++|+++.|..
T Consensus       301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~  366 (385)
T PRK07574        301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEY  366 (385)
T ss_pred             CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999998853

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=7.7e-68  Score=516.19  Aligned_cols=320  Identities=24%  Similarity=0.297  Sum_probs=260.3

Q ss_pred             CcceEEEeCCCCCCChhHHHHHHhcCCCeEEEc-------CCCCCccccc-CcceEEEEe-CCCCCHHHHhcCCC--CeE
Q 019081           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-------VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQ--MKL   79 (346)
Q Consensus        11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~d~~i~~-~~~~~~~~l~~~~~--Lk~   79 (346)
                      -+++|+++.+..+.  .. .+.++.. ++++..       .+.+++.+.+ .++|+++++ ..++++++++++|+  ||+
T Consensus        14 ~~~~v~~~~~~~~~--~~-~~~L~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~   89 (386)
T PLN02306         14 GKYRVVSTKPMPGT--RW-INLLVDQ-DCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKA   89 (386)
T ss_pred             CCceEEEeCCCCcH--HH-HHHHHhc-CceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceE
Confidence            35688888765321  11 2333332 223321       2345566666 569988875 46899999999995  699


Q ss_pred             EEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCccccCCC
Q 019081           80 IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGK  154 (346)
Q Consensus        80 I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~-----~~~~~l~g~  154 (346)
                      |+++|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..     ..|.+|.||
T Consensus        90 I~~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gk  166 (386)
T PLN02306         90 FSNMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQ  166 (386)
T ss_pred             EEECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCC
Confidence            99999999999999999999999999998   8899999999999999999999999999998742     246899999


Q ss_pred             eEEEEecCHHHHHHHHHHc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEE
Q 019081          155 TVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~  231 (346)
                      ||||||+|+||+++|++++ +|||+|++||++..........  .+..  ...........  ...+|++++++||+|++
T Consensus       167 tvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~--~~~~--~l~~~~~~~~~~~~~~~L~ell~~sDiV~l  242 (386)
T PLN02306        167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT--AYGQ--FLKANGEQPVTWKRASSMEEVLREADVISL  242 (386)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh--hhcc--cccccccccccccccCCHHHHHhhCCEEEE
Confidence            9999999999999999985 9999999999875321000000  0000  00000000000  12589999999999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHV  311 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~  311 (346)
                      |+|+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+ +++|||++|||++|||+
T Consensus       243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~-~~~~L~~~pNVilTPHi  321 (386)
T PLN02306        243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY-MKPGLADMKNAVVVPHI  321 (386)
T ss_pred             eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCC-CcchHhhCCCEEECCcc
Confidence            99999999999999999999999999999999999999999999999999999999999997 46899999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          312 GGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       312 a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      ||+|.++++++.+.+++|+.+|++|+++.|.
T Consensus       322 ag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~  352 (386)
T PLN02306        322 ASASKWTREGMATLAALNVLGKLKGYPVWGD  352 (386)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence            9999999999999999999999999998763

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=6.4e-67  Score=530.39  Aligned_cols=304  Identities=32%  Similarity=0.513  Sum_probs=265.6

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEc---CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCccCC
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d   88 (346)
                      |||+++.+..+.    ..+.++..+++++..   .+.+++.+.++++|+++++ ..++++++++++|+||||+++|+|+|
T Consensus         1 m~ili~~~~~~~----~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   76 (526)
T PRK13581          1 MKVLVSDPISPA----GLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD   76 (526)
T ss_pred             CeEEEeCCCCHH----HHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence            478888754321    223444434555542   2345677788999998875 45899999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCHHHH
Q 019081           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV  166 (346)
Q Consensus        89 ~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~IG~  166 (346)
                      +||+++|+++||.|+|+|++   |+.+||||++++||+++|+++.+++.+++|.|..  ..+.+|.||||||||+|+||+
T Consensus        77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~  153 (526)
T PRK13581         77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS  153 (526)
T ss_pred             cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence            99999999999999999998   8899999999999999999999999999999974  357899999999999999999


Q ss_pred             HHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHH
Q 019081          167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKS  246 (346)
Q Consensus       167 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~  246 (346)
                      .+|+++++|||+|++||++.....                  .........++++++++||+|++|+|+|++|+++|+++
T Consensus       154 ~vA~~l~~fG~~V~~~d~~~~~~~------------------~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~  215 (526)
T PRK13581        154 EVAKRAKAFGMKVIAYDPYISPER------------------AAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAE  215 (526)
T ss_pred             HHHHHHHhCCCEEEEECCCCChhH------------------HHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHH
Confidence            999999999999999998643210                  00000123489999999999999999999999999999


Q ss_pred             HHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHH
Q 019081          247 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV  326 (346)
Q Consensus       247 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~  326 (346)
                      .|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+|++|.+++.++.+.+
T Consensus       216 ~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~  294 (526)
T PRK13581        216 ELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQV  294 (526)
T ss_pred             HHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999975 8999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCc
Q 019081          327 GDVALQLHAGTPLTGL  342 (346)
Q Consensus       327 ~~ni~~~~~g~~~~~~  342 (346)
                      ++|+.+|++|+++.|.
T Consensus       295 ~~ni~~~~~g~~~~~~  310 (526)
T PRK13581        295 AEQVIDALRGGPVPNA  310 (526)
T ss_pred             HHHHHHHHcCCCcCce
Confidence            9999999999988764

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=1.1e-66  Score=528.66  Aligned_cols=275  Identities=30%  Similarity=0.517  Sum_probs=251.4

Q ss_pred             CCCCcccccCcceEEEEeC-CCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHH
Q 019081           45 PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (346)
Q Consensus        45 ~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~  123 (346)
                      +.+++.+.++++|+++++. .++++++++++|+||||+++|+|+|+||+++|+++||.|+|+||+   |+.+||||++++
T Consensus        30 ~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l  106 (525)
T TIGR01327        30 SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTG---NTISAAEHALAM  106 (525)
T ss_pred             CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCc---ChHHHHHHHHHH
Confidence            3456778889999988754 589999999999999999999999999999999999999999998   889999999999


Q ss_pred             HHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhh
Q 019081          124 MLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV  201 (346)
Q Consensus       124 ~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~  201 (346)
                      ||+++|+++.+++.+++|+|..  ..+.+|+||||||||+|+||+++|++|++|||+|++||++.....           
T Consensus       107 ~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-----------  175 (525)
T TIGR01327       107 LLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPER-----------  175 (525)
T ss_pred             HHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-----------
Confidence            9999999999999999999974  357899999999999999999999999999999999998632210           


Q ss_pred             ccccccccccccC-C-cCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC
Q 019081          202 KNGIIDDLVDEKG-C-HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH  279 (346)
Q Consensus       202 ~~~~~~~~~~~~~-~-~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~  279 (346)
                              ....+ . ..++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+
T Consensus       176 --------~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~  247 (525)
T TIGR01327       176 --------AEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGH  247 (525)
T ss_pred             --------HHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCC
Confidence                    00111 1 2479999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          280 LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       280 i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      |+||+||||++||+ +++|||++|||++|||+|++|.+++.++.+.+++|+.+|++|+++.|.
T Consensus       248 i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~  309 (525)
T TIGR01327       248 VRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNA  309 (525)
T ss_pred             eeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence            99999999999995 589999999999999999999999999999999999999999988653

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-66  Score=497.65  Aligned_cols=306  Identities=20%  Similarity=0.320  Sum_probs=266.9

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCC---CCCcccccCcceEEEEe-CCCCCHHHHhcCC--CCeEEEEcCc
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRAN--QMKLIMQFGV   85 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~--~Lk~I~~~~~   85 (346)
                      ||||++++.. +.+..+..++++.+ ++++...+   .++..+.+.++|+++++ ..++++++++++|  +||+|++.|+
T Consensus         1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (330)
T PRK12480          1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA   78 (330)
T ss_pred             CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence            5899999876 34466666666665 56555422   23456788999988876 4689999999997  8999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhccc--CC-CCccccCCCeEEEEecC
Q 019081           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL--GV-PTGETLLGKTVFILGFG  162 (346)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~--~~-~~~~~l~g~tvgIiG~G  162 (346)
                      |+|+||+++|+++||.|+|+||+   ++.+||||++++||+++|++..+++.++++.|  .. ..+++|+|++|||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G  155 (330)
T PRK12480         79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG  155 (330)
T ss_pred             ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence            99999999999999999999998   78999999999999999999999999999865  33 35789999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       163 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~l  242 (346)
                      .||+++|++|++|||+|++||++.....                 ....   ...++++++++||+|++|+|++++|+++
T Consensus       156 ~IG~~vA~~L~~~G~~V~~~d~~~~~~~-----------------~~~~---~~~~l~ell~~aDiVil~lP~t~~t~~l  215 (330)
T PRK12480        156 RIGAATAKIYAGFGATITAYDAYPNKDL-----------------DFLT---YKDSVKEAIKDADIISLHVPANKESYHL  215 (330)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCChhHhh-----------------hhhh---ccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence            9999999999999999999998753210                 0000   1248999999999999999999999999


Q ss_pred             CCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCC-------------CCCCCCCCCceEEcc
Q 019081          243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-------------PNDPILKFKNVLITP  309 (346)
Q Consensus       243 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-------------~~~pL~~~~nviiTP  309 (346)
                      ++++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++             ..+|||++|||++||
T Consensus       216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  295 (330)
T PRK12480        216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP  295 (330)
T ss_pred             HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence            9999999999999999999999999999999999999999999999999962             124799999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          310 HVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       310 H~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      |+|++|.++++++.+.+++|+.+|++|+++.+.
T Consensus       296 Hia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~  328 (330)
T PRK12480        296 HIAFFSDEAVQNLVEGGLNAALSVINTGTCETR  328 (330)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            999999999999999999999999999988754

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=5.1e-67  Score=484.31  Aligned_cols=300  Identities=28%  Similarity=0.450  Sum_probs=265.9

Q ss_pred             CcceEEEeCCCCCCChhHHHHHHhcCC-CeEEE-cCCCCCcccccCcceEEEEe-CCCCCHHHHh-cCCCCeEEEEcCcc
Q 019081           11 NITRVLFCGPHFPASHNYTKEYLQNYP-SIQVD-VVPISDVPDVIANYHLCVVK-TMRLDSNCIS-RANQMKLIMQFGVG   86 (346)
Q Consensus        11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~-~~~~Lk~I~~~~~G   86 (346)
                      +|.+||++.+.-..    ..+.+++.. .+++. ..+.+++...++++|+++++ .+++++++|+ ...+||+|+++++|
T Consensus         5 ~~~~il~~e~~~~~----~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G   80 (406)
T KOG0068|consen    5 DMRKILVAESLDQA----CIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIG   80 (406)
T ss_pred             CcceEEEecccchH----HHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccC
Confidence            34479999876432    234454431 23332 34567888999999988875 7899999999 56799999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCHH
Q 019081           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNI  164 (346)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~I  164 (346)
                      +||||+++|+++||.|.|+|.+   |+.++||+++++|+++.|++++....+|+|+|..  ..|.+|+|||+||+|+|+|
T Consensus        81 ~dNVDL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrI  157 (406)
T KOG0068|consen   81 VDNVDLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRI  157 (406)
T ss_pred             ccccChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccc
Confidence            9999999999999999999998   8899999999999999999999999999999974  5799999999999999999


Q ss_pred             HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCccccCCC
Q 019081          165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIV  243 (346)
Q Consensus       165 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T~~li  243 (346)
                      |+.+|++++++||+|++||+-....                   ....++ ...+++|+++.||+|++|||+||+|++|+
T Consensus       158 GseVA~r~k~~gm~vI~~dpi~~~~-------------------~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~li  218 (406)
T KOG0068|consen  158 GSEVAVRAKAMGMHVIGYDPITPMA-------------------LAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLL  218 (406)
T ss_pred             hHHHHHHHHhcCceEEeecCCCchH-------------------HHHhccceeeeHHHHHhhcCEEEEccCCCcchhhcc
Confidence            9999999999999999999864331                   122223 45799999999999999999999999999


Q ss_pred             CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCC--CCCCCCCCceEEccCCCCCcHHHHHH
Q 019081          244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP--NDPILKFKNVLITPHVGGVTEHSYRS  321 (346)
Q Consensus       244 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~--~~pL~~~~nviiTPH~a~~t~~~~~~  321 (346)
                      |.+.|++||+|..+||+|||++||+.||++||++|+++||+||||++||+..  ++.|.+||||++|||+|++|.|++.+
T Consensus       219 n~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~  298 (406)
T KOG0068|consen  219 NDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSR  298 (406)
T ss_pred             CHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999765  78999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 019081          322 MAKVVGDVALQLHAG  336 (346)
Q Consensus       322 ~~~~~~~ni~~~~~g  336 (346)
                      ++..+++++..|..|
T Consensus       299 iaievaea~~~~~~~  313 (406)
T KOG0068|consen  299 IAIEVAEAVSDYING  313 (406)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999999998

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=1.1e-64  Score=482.82  Aligned_cols=299  Identities=22%  Similarity=0.343  Sum_probs=253.5

Q ss_pred             eEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchh
Q 019081           14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN   93 (346)
Q Consensus        14 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~   93 (346)
                      .+++..+... ...+...+.+..|++++..++..+    ..++|+++++..  +.+.++ .|+||||++.|+|+|++|..
T Consensus         2 ~~~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~----~~~a~~~~~~~~--~~~~l~-~~~Lk~I~~~~aG~d~i~~~   73 (312)
T PRK15469          2 DIIFYHPTFD-TQWWIEALRKALPQARVRAWKSGD----NDPADYALVWHP--PVEMLA-GRDLKAVFALGAGVDSILSK   73 (312)
T ss_pred             EEEEeCCccC-HHHHHHHHHHHCCCCeEEecCCCC----CccCeEEEEeCC--ChHHhc-cCCceEEEEcccccchhhhh
Confidence            6777766532 233444444557888776544433    467898887653  567776 58999999999999999832


Q ss_pred             H-----HhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHH
Q 019081           94 A-----ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVEL  168 (346)
Q Consensus        94 ~-----~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~v  168 (346)
                      .     +.++||.|+|+++.  +++.+||||++++||++.|++..+.+.++.+.|....+.++.||||||||+|.||+++
T Consensus        74 ~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~v  151 (312)
T PRK15469         74 LQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKV  151 (312)
T ss_pred             hccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHH
Confidence            2     34589999998764  2789999999999999999999999999999998666678999999999999999999


Q ss_pred             HHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHH
Q 019081          169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL  248 (346)
Q Consensus       169 A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l  248 (346)
                      |++|++|||+|++||++.....                  .........++++++++||+|++|+|+|++|+++|+++.|
T Consensus       152 A~~l~afG~~V~~~~~~~~~~~------------------~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l  213 (312)
T PRK15469        152 AQSLQTWGFPLRCWSRSRKSWP------------------GVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLL  213 (312)
T ss_pred             HHHHHHCCCEEEEEeCCCCCCC------------------CceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHH
Confidence            9999999999999998653310                  0111123468999999999999999999999999999999


Q ss_pred             ccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 019081          249 SSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD  328 (346)
Q Consensus       249 ~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~  328 (346)
                      ++||+|++|||+|||++||++||++||++|+|+||+||||++||+|+++|||++|||++|||+||+|.+.  ++.+.+.+
T Consensus       214 ~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~  291 (312)
T PRK15469        214 EQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYISR  291 (312)
T ss_pred             hcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999875  67899999


Q ss_pred             HHHHHHcCCCCCCc
Q 019081          329 VALQLHAGTPLTGL  342 (346)
Q Consensus       329 ni~~~~~g~~~~~~  342 (346)
                      |+++|.+|+++.|.
T Consensus       292 n~~~~~~g~~~~~~  305 (312)
T PRK15469        292 TIAQLEKGERVCGQ  305 (312)
T ss_pred             HHHHHHcCCCCccc
Confidence            99999999998764

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=6e-63  Score=475.47  Aligned_cols=303  Identities=21%  Similarity=0.347  Sum_probs=258.5

Q ss_pred             eEEEeCCCCCCChhHHHHHHhcCCCeEEEc---CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCC--CeEEEEcCccC
Q 019081           14 RVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVGL   87 (346)
Q Consensus        14 ~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~--Lk~I~~~~~G~   87 (346)
                      +++++.+   .+..+.+.+.+.+ ++++..   ...++..+.+.++|+++++ ..++++++++++|+  ||+|+++|+|+
T Consensus         5 ~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~   80 (332)
T PRK08605          5 KIMSVRD---EDAPYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGF   80 (332)
T ss_pred             EEEecCH---HHHHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEccccc
Confidence            4444443   2234445555543 444432   2234556778899988775 56899999999997  99999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccC--C-CCccccCCCeEEEEecCHH
Q 019081           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--V-PTGETLLGKTVFILGFGNI  164 (346)
Q Consensus        88 d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~--~-~~~~~l~g~tvgIiG~G~I  164 (346)
                      |+||+++|+++||.|+|+||+   |+.+||||++++||+++|++..+++.++++.|.  . ..+++|+|++|||||+|.|
T Consensus        81 d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~I  157 (332)
T PRK08605         81 DTYDLELATKYNLIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRI  157 (332)
T ss_pred             chhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHH
Confidence            999999999999999999998   789999999999999999999999999998764  2 2478999999999999999


Q ss_pred             HHHHHHHH-ccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCC
Q 019081          165 GVELAKRL-RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV  243 (346)
Q Consensus       165 G~~vA~~l-~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li  243 (346)
                      |+++|++| ++|||+|++||++.....                .....   ...++++++++||+|++|+|+++.|++++
T Consensus       158 G~~vA~~L~~~~g~~V~~~d~~~~~~~----------------~~~~~---~~~~l~ell~~aDvIvl~lP~t~~t~~li  218 (332)
T PRK08605        158 GLAVAKIFAKGYGSDVVAYDPFPNAKA----------------ATYVD---YKDTIEEAVEGADIVTLHMPATKYNHYLF  218 (332)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCccHhH----------------Hhhcc---ccCCHHHHHHhCCEEEEeCCCCcchhhhc
Confidence            99999999 799999999998753310                00110   12489999999999999999999999999


Q ss_pred             CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCC--CCCCC-----------CCCCCCceEEccC
Q 019081          244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP--FDPND-----------PILKFKNVLITPH  310 (346)
Q Consensus       244 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP--l~~~~-----------pL~~~~nviiTPH  310 (346)
                      +++.++.||+|++|||+|||.++|+++|+++|++|+|+||+||||++||  +|.++           +||++|||++|||
T Consensus       219 ~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPH  298 (332)
T PRK08605        219 NADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPH  298 (332)
T ss_pred             CHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCc
Confidence            9999999999999999999999999999999999999999999999998  46665           4999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          311 VGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       311 ~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      +|++|.++.+++.+.+++|+.+|++|++..+.
T Consensus       299 ia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~  330 (332)
T PRK08605        299 IAFYTDAAVKNLIVDALDATLEVLQTGTTRLR  330 (332)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999999999999999887754

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.9e-61  Score=456.13  Aligned_cols=253  Identities=23%  Similarity=0.369  Sum_probs=226.1

Q ss_pred             cCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHH
Q 019081           53 IANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN  132 (346)
Q Consensus        53 ~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~  132 (346)
                      ..++|++++...      +..+++||||++.|+|+|+||+++|+++||.++|. |+   |+.+||||++++||++.|++.
T Consensus        32 ~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~  101 (303)
T PRK06436         32 YYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNIC  101 (303)
T ss_pred             cCCCCEEEecCC------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChH
Confidence            457787765432      23368999999999999999999999999888775 54   779999999999999999999


Q ss_pred             HHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc
Q 019081          133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE  212 (346)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (346)
                      .+.+.+++|.|....+++|+||||||||+|+||+++|+++++|||+|++|||+....                   ....
T Consensus       102 ~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~  162 (303)
T PRK06436        102 ENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-------------------GISS  162 (303)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-------------------Cccc
Confidence            999999999998766789999999999999999999999999999999999864321                   0110


Q ss_pred             cCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCC
Q 019081          213 KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP  292 (346)
Q Consensus       213 ~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  292 (346)
                        ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|++||+++|++|+++||+||||++||
T Consensus       163 --~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP  240 (303)
T PRK06436        163 --IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP  240 (303)
T ss_pred             --ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCC
Confidence              135899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceEEccCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 019081          293 FDPNDPILKFKNVLITPHVG-GVTEHSYRSMAKVVGDVALQLHAGTPL  339 (346)
Q Consensus       293 l~~~~pL~~~~nviiTPH~a-~~t~~~~~~~~~~~~~ni~~~~~g~~~  339 (346)
                      +++++   .+|||++|||++ ++|.++.+++.+.+++|+.+|+.|+++
T Consensus       241 ~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~~  285 (303)
T PRK06436        241 IITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKPK  285 (303)
T ss_pred             CCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            98776   689999999986 589999999999999999999999873

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=1.3e-60  Score=462.63  Aligned_cols=276  Identities=24%  Similarity=0.342  Sum_probs=236.2

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCccCCccc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD   91 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   91 (346)
                      |||++.... +    +..++++.+.++.... ..+...+.+.++|+++++ ..++++++++ +|+||+|+++++|+||||
T Consensus         1 mkIl~d~~~-~----~~~~~~~~~~ev~~~~-~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD   73 (378)
T PRK15438          1 MKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVD   73 (378)
T ss_pred             CEEEEeCCc-c----hHHHHHhhcCcEEEeC-CCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccC
Confidence            578887643 3    3345555543343332 122234667899998885 4689999996 699999999999999999


Q ss_pred             hhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHH
Q 019081           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  171 (346)
Q Consensus        92 ~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~  171 (346)
                      +++++++||.|+|+||+   |+.+||||++++||++.|+                .+.+|.||||||||+|+||+++|++
T Consensus        74 ~~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~----------------~g~~L~gktvGIIG~G~IG~~vA~~  134 (378)
T PRK15438         74 EAWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAER----------------DGFSLHDRTVGIVGVGNVGRRLQAR  134 (378)
T ss_pred             HHHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhcc----------------CCCCcCCCEEEEECcCHHHHHHHHH
Confidence            99999999999999998   8899999999999999986                1468999999999999999999999


Q ss_pred             HccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCcc----ccCCCCHHH
Q 019081          172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNKSF  247 (346)
Q Consensus       172 l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~----T~~li~~~~  247 (346)
                      |++|||+|++||+.....                  .   ......++++++++||+|++|+|+|++    |+||||++.
T Consensus       135 l~a~G~~V~~~dp~~~~~------------------~---~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~  193 (378)
T PRK15438        135 LEALGIKTLLCDPPRADR------------------G---DEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL  193 (378)
T ss_pred             HHHCCCEEEEECCccccc------------------c---cccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence            999999999999743210                  0   001246899999999999999999996    999999999


Q ss_pred             HccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHH
Q 019081          248 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG  327 (346)
Q Consensus       248 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~  327 (346)
                      |++||+|++|||+|||++||++||+++|++|++.||+||||++||+ ++++||..+| ++|||+||+|.+...++..+++
T Consensus       194 l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~  271 (378)
T PRK15438        194 IRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVF  271 (378)
T ss_pred             HhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999996 5788987665 9999999999999999999999


Q ss_pred             HHHHHHHcCCC
Q 019081          328 DVALQLHAGTP  338 (346)
Q Consensus       328 ~ni~~~~~g~~  338 (346)
                      +|+.+|+ |++
T Consensus       272 ~~l~~~~-~~~  281 (378)
T PRK15438        272 EAYSKFI-GHE  281 (378)
T ss_pred             HHHHHHH-cCc
Confidence            9999998 444

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=2.2e-60  Score=462.26  Aligned_cols=278  Identities=19%  Similarity=0.319  Sum_probs=240.3

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCc-ccccCcceEEEEeC-CCCCHHHHhcCCCCeEEEEcCccCCcc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDV-PDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGV   90 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~i   90 (346)
                      |||++.... |    +.+++++.+..+..  .+..++ .+.++++|++++++ .++++++++ .|+||||+++++|+|||
T Consensus         1 mkI~~d~~~-p----~~~~~~~~~~~v~~--~~~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~i   72 (381)
T PRK00257          1 MKIVADENI-P----LLDAFFAGFGEIRR--LPGRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHL   72 (381)
T ss_pred             CEEEEecCc-h----hHHHHHhhCCcEEE--cCCcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCcccccc
Confidence            688888765 3    33455555443333  332233 56789999988764 689999998 58999999999999999


Q ss_pred             chhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHH
Q 019081           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK  170 (346)
Q Consensus        91 d~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~  170 (346)
                      |+++++++||.|+|+||+   |+.+||||++++||++.|+                .+.+|.||||||||+|+||+.+|+
T Consensus        73 D~~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----------------~g~~l~gktvGIIG~G~IG~~va~  133 (381)
T PRK00257         73 DLDYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----------------EGVDLAERTYGVVGAGHVGGRLVR  133 (381)
T ss_pred             CHHHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----------------cCCCcCcCEEEEECCCHHHHHHHH
Confidence            999999999999999998   8999999999999999875                257899999999999999999999


Q ss_pred             HHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCc----cccCCCCHH
Q 019081          171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKS  246 (346)
Q Consensus       171 ~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~----~T~~li~~~  246 (346)
                      ++++|||+|++||+.....                  ..   .....++++++++||+|++|+|+|+    .|+||||++
T Consensus       134 ~l~a~G~~V~~~Dp~~~~~------------------~~---~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~  192 (381)
T PRK00257        134 VLRGLGWKVLVCDPPRQEA------------------EG---DGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEA  192 (381)
T ss_pred             HHHHCCCEEEEECCccccc------------------cc---CccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHH
Confidence            9999999999999753211                  00   0124689999999999999999999    599999999


Q ss_pred             HHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHH
Q 019081          247 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV  326 (346)
Q Consensus       247 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~  326 (346)
                      .|++||+|++|||+|||++||++||+++|++|+++||+||||++||+ +++|||.. |+++|||+||+|.++..++.+++
T Consensus       193 ~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~  270 (381)
T PRK00257        193 FLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQI  270 (381)
T ss_pred             HHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999996 67899985 99999999999999999999999


Q ss_pred             HHHHHHHHcCCCCC
Q 019081          327 GDVALQLHAGTPLT  340 (346)
Q Consensus       327 ~~ni~~~~~g~~~~  340 (346)
                      .+|+.+|+.+.+..
T Consensus       271 ~~nl~~~~~~~~~~  284 (381)
T PRK00257        271 YQALCRFFGIPARV  284 (381)
T ss_pred             HHHHHHHHcCCCcc
Confidence            99999999887543

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=2.8e-61  Score=455.47  Aligned_cols=271  Identities=36%  Similarity=0.561  Sum_probs=241.5

Q ss_pred             cccCcceEEEEe--CCCCCHHHHhcC-CCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHH
Q 019081           51 DVIANYHLCVVK--TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGL  127 (346)
Q Consensus        51 ~~~~~~d~~i~~--~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~  127 (346)
                      ..+.+...++.+  ...++.+.+.+. |+||+|+++|+|+||||+++|++|||+|+|+|+.   +..+|||++++++|.+
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil~~  132 (336)
T KOG0069|consen   56 KRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLLAL  132 (336)
T ss_pred             hhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHHHH
Confidence            344444444432  456777777765 9999999999999999999999999999999998   6789999999999999


Q ss_pred             HHhHHHHHHHHHhcccC----CCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcc
Q 019081          128 LRKQNEMRMAIEQKKLG----VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN  203 (346)
Q Consensus       128 ~R~~~~~~~~~~~~~~~----~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~  203 (346)
                      +|++...++++++|+|.    .+.+..+.||||||+|+|+||+.+|++|++||+.+.++.|+......            
T Consensus       133 ~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~------------  200 (336)
T KOG0069|consen  133 LRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEE------------  200 (336)
T ss_pred             HhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhh------------
Confidence            99999999999999994    24578999999999999999999999999999888888886654211            


Q ss_pred             ccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          204 GIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       204 ~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                           ..+......++++++++||+|++|||+|++|+|+||++.|++||+|++|||++||.++|+++|++||++|+|+||
T Consensus       201 -----~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~a  275 (336)
T KOG0069|consen  201 -----AYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGA  275 (336)
T ss_pred             -----HHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccc
Confidence                 111111357999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          284 GIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       284 ~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      |||||++|| +.++||+.++||++|||+|+.|.+++.+|++.+++|+.+++.|+++...
T Consensus       276 GlDVf~~EP-~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~  333 (336)
T KOG0069|consen  276 GLDVFEPEP-PVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTP  333 (336)
T ss_pred             cccccCCCC-CCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCc
Confidence            999999999 8999999999999999999999999999999999999999999987653

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=1.2e-51  Score=363.99  Aligned_cols=174  Identities=39%  Similarity=0.619  Sum_probs=153.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHhccc---CCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccc
Q 019081          121 IYLMLGLLRKQNEMRMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS  197 (346)
Q Consensus       121 ~~~~l~~~R~~~~~~~~~~~~~~---~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~  197 (346)
                      +++||++.|++..+++.++++.|   ....+++++|+||||||+|+||+++|+++++|||+|++|||+.....       
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~-------   73 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE-------   73 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH-------
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh-------
Confidence            57999999999999999999999   56678999999999999999999999999999999999999765421       


Q ss_pred             hhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          198 ALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       198 ~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                                 .....+ ...++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus        74 -----------~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   74 -----------GADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             -----------HHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             -----------hcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence                       001111 35699999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCC
Q 019081          277 CGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG  312 (346)
Q Consensus       277 ~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a  312 (346)
                      +|+|+||+||||++||+++++|||++|||++|||+|
T Consensus       143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred             hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence            999999999999999999999999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.97  E-value=5.2e-32  Score=253.99  Aligned_cols=250  Identities=25%  Similarity=0.399  Sum_probs=221.4

Q ss_pred             CCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcc
Q 019081           63 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK  142 (346)
Q Consensus        63 ~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~  142 (346)
                      +..++++-+++++.||++.+.+.|+|++|+.+|.+-||.|+|.|+.   .-+.+|+-++..+|.++|+-....+..+.+.
T Consensus        82 ~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~  158 (435)
T KOG0067|consen   82 TITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHILNLYRRNTWLCQALREGT  158 (435)
T ss_pred             ecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHHhhhcccchhhhhhcccc
Confidence            5678999999999999999999999999999999999999999987   3478899999999999999999999999988


Q ss_pred             cCCC---------CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccccc
Q 019081          143 LGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK  213 (346)
Q Consensus       143 ~~~~---------~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (346)
                      |...         ....+.|.++|++|+|++|++++.++++||+.|+.||+.....                   .-...
T Consensus       159 ~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g-------------------~~~~l  219 (435)
T KOG0067|consen  159 CTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDG-------------------IDKSL  219 (435)
T ss_pred             eeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhh-------------------hhhhc
Confidence            7532         2346899999999999999999999999999999999865431                   11111


Q ss_pred             C--CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC
Q 019081          214 G--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE  291 (346)
Q Consensus       214 ~--~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  291 (346)
                      +  ..-++++++-++|.+++||-+++.++++|+.-.+++|++|++++|++||+++|+++|.+||++|++.|++       
T Consensus       220 g~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------  292 (435)
T KOG0067|consen  220 GLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------  292 (435)
T ss_pred             ccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------
Confidence            1  2346999999999999999999999999999999999999999999999999999999999999999987       


Q ss_pred             CCC-CCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 019081          292 PFD-PNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG  341 (346)
Q Consensus       292 Pl~-~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  341 (346)
                      |.. ...||.+.||.++|||.+++++.+..++.+.++..+++-+.|+.+..
T Consensus       293 ~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~  343 (435)
T KOG0067|consen  293 PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDS  343 (435)
T ss_pred             CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchh
Confidence            221 34689999999999999999999999999999999999888876643

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.88  E-value=7.8e-22  Score=195.19  Aligned_cols=170  Identities=19%  Similarity=0.203  Sum_probs=134.6

Q ss_pred             cCccCCccc-hhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEec
Q 019081           83 FGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF  161 (346)
Q Consensus        83 ~~~G~d~id-~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~  161 (346)
                      .++|+..+- +....+-+|+|.|+|++   +..+++|+++++++++...+      +|.+      +..++||+|+|+|+
T Consensus       198 TttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~------~R~~------~~~LaGKtVgVIG~  262 (476)
T PTZ00075        198 TTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGI------FRAT------DVMIAGKTVVVCGY  262 (476)
T ss_pred             chHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHH------HHhc------CCCcCCCEEEEECC
Confidence            466776542 22223468999999998   77999999999999988333      3333      46899999999999


Q ss_pred             CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccC
Q 019081          162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG  241 (346)
Q Consensus       162 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~  241 (346)
                      |.||+.+|+++++|||+|+++++++.....                 .........+++++++.||+|++|+    .|++
T Consensus       263 G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~-----------------A~~~G~~~~~leell~~ADIVI~at----Gt~~  321 (476)
T PTZ00075        263 GDVGKGCAQALRGFGARVVVTEIDPICALQ-----------------AAMEGYQVVTLEDVVETADIFVTAT----GNKD  321 (476)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCchhHHH-----------------HHhcCceeccHHHHHhcCCEEEECC----Cccc
Confidence            999999999999999999999876433100                 0001112357999999999999984    4788


Q ss_pred             CCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCC
Q 019081          242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP  295 (346)
Q Consensus       242 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~  295 (346)
                      +|+++.|++||+|++|||+||+   |++.++++|+++.    ++||++.||...
T Consensus       322 iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        322 IITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             ccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            9999999999999999999999   7889999998754    789999999644

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.83  E-value=3.9e-20  Score=174.82  Aligned_cols=155  Identities=20%  Similarity=0.312  Sum_probs=124.0

Q ss_pred             CCHHHHhcCCCCeEEEEcCccCCccchh-HHhhCCcEEE------ecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHH
Q 019081           66 LDSNCISRANQMKLIMQFGVGLEGVDIN-AATRCGIKVA------RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI  138 (346)
Q Consensus        66 ~~~~~l~~~~~Lk~I~~~~~G~d~id~~-~~~~~gI~v~------n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~  138 (346)
                      +++++++.+|   .++...+|+++.|++ +|+++||.|+      |++.+   |+.++||+++++++..           
T Consensus        82 l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~---n~~~~Ae~ai~~al~~-----------  144 (287)
T TIGR02853        82 LTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIY---NSIPTAEGAIMMAIEH-----------  144 (287)
T ss_pred             ccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEE---ccHhHHHHHHHHHHHh-----------
Confidence            5688998888   377788899999998 9999999999      88776   7899999999877743           


Q ss_pred             HhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC
Q 019081          139 EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED  218 (346)
Q Consensus       139 ~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (346)
                              .+.+++|++++|+|+|.||+.+|+.|+++|++|++++|+.......              ...........+
T Consensus       145 --------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~--------------~~~g~~~~~~~~  202 (287)
T TIGR02853       145 --------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI--------------TEMGLIPFPLNK  202 (287)
T ss_pred             --------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH--------------HHCCCeeecHHH
Confidence                    1357899999999999999999999999999999999875431000              000000012346


Q ss_pred             HHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          219 IFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       219 l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      ++++++++|+|++|+|.+     +++++.++.||+++++||++..+
T Consensus       203 l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       203 LEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             HHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence            788999999999999974     77899999999999999998744

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.81  E-value=1.1e-19  Score=152.66  Aligned_cols=98  Identities=24%  Similarity=0.397  Sum_probs=75.6

Q ss_pred             EEEeCCCCCCChhHHHHHHhc-CCCeEEEc-CCCCCcccccCcceEEEEeCCC-CCHHHHhcCCCCeEEEEcCccCCccc
Q 019081           15 VLFCGPHFPASHNYTKEYLQN-YPSIQVDV-VPISDVPDVIANYHLCVVKTMR-LDSNCISRANQMKLIMQFGVGLEGVD   91 (346)
Q Consensus        15 vl~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~d~~i~~~~~-~~~~~l~~~~~Lk~I~~~~~G~d~id   91 (346)
                      ||++.+..+    ...+.+++ + .+++.. .+.+++.+.++++|+++++... +++++++++|+||||++.|+|+|+||
T Consensus         1 ili~~~~~~----~~~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   75 (133)
T PF00389_consen    1 ILITDPLPD----EEIERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID   75 (133)
T ss_dssp             EEESSS-SH----HHHHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-
T ss_pred             eEEeccCCH----HHHHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc
Confidence            567765533    23445555 3 444433 2345677889999999997655 99999999999999999999999999


Q ss_pred             hhHHhhCCcEEEecCCCCCCChhhHHHHH
Q 019081           92 INAATRCGIKVARIPGDVTGNAASCAELT  120 (346)
Q Consensus        92 ~~~~~~~gI~v~n~p~~~~~na~~vAE~~  120 (346)
                      +++|+++||.|+|+||+   ++.+||||+
T Consensus        76 ~~~a~~~gI~V~n~~g~---~~~aVAE~a  101 (133)
T PF00389_consen   76 LEAAKERGIPVTNVPGY---NAEAVAEHA  101 (133)
T ss_dssp             HHHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred             HHHHhhCeEEEEEeCCc---CCcchhccc
Confidence            99999999999999998   889999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PLN02494 adenosylhomocysteinase

Probab=99.67  E-value=1.1e-16  Score=158.28  Aligned_cols=121  Identities=20%  Similarity=0.256  Sum_probs=101.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      ..+.|++|+|+|+|.||+.+|+++++||++|+++++++.+...                 .........+++++++.+|+
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e-----------------A~~~G~~vv~leEal~~ADV  312 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ-----------------ALMEGYQVLTLEDVVSEADI  312 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH-----------------HHhcCCeeccHHHHHhhCCE
Confidence            3579999999999999999999999999999999886543110                 00001123478899999999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCC-CCCCCHHHHHHH--HHhCCCeEEEEecCCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR-GGLLDYEAIAHY--LECGHLGGLGIDVAWTE  291 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR-g~~vd~~aL~~a--L~~g~i~ga~lDV~~~E  291 (346)
                      |+.    +..|+++++.+.|+.||+|++|+|+|| +..||+++|.++  ++.+.+. +.+|+|+.|
T Consensus       313 VI~----tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~  373 (477)
T PLN02494        313 FVT----TTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP  373 (477)
T ss_pred             EEE----CCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence            997    567889999999999999999999999 679999999998  9999998 899999876

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.62  E-value=3.2e-15  Score=142.06  Aligned_cols=172  Identities=19%  Similarity=0.297  Sum_probs=126.9

Q ss_pred             cccCcceEEEEeCC-----------------CCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCC---CC
Q 019081           51 DVIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGD---VT  110 (346)
Q Consensus        51 ~~~~~~d~~i~~~~-----------------~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~---~~  110 (346)
                      +.+.++|+++....                 .++++.++.+|++..+. .|.+.++++ +.|.++||.+.+.+..   ..
T Consensus        51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~  128 (296)
T PRK08306         51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI  128 (296)
T ss_pred             HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence            44678898875311                 13688999999997544 588889988 7899999999987642   01


Q ss_pred             CChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccc
Q 019081          111 GNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS  190 (346)
Q Consensus       111 ~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~  190 (346)
                      .|+.++||.++.+.+.   +                .+.++.|++++|+|+|.+|+.+++.|+.+|++|+++||+.....
T Consensus       129 ~ns~~~aegav~~a~~---~----------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~  189 (296)
T PRK08306        129 LNSIPTAEGAIMMAIE---H----------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLA  189 (296)
T ss_pred             hccHhHHHHHHHHHHH---h----------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            2678888886654331   0                13567899999999999999999999999999999999754311


Q ss_pred             ccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      ...              ..........++.+.++++|+|+.++|.     .+++++.++.|++|+++||++-
T Consensus       190 ~~~--------------~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        190 RIT--------------EMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             HHH--------------HcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence            000              0000001224677889999999999884     4788999999999999999974

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.58  E-value=3.6e-15  Score=146.40  Aligned_cols=120  Identities=21%  Similarity=0.269  Sum_probs=99.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (346)
                      ..+.|++|+|+|+|.||+.+|++++++|++|+++|+++.+....                  ...+ ...+++++++.+|
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A------------------~~~G~~v~~leeal~~aD  252 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA------------------AMDGFRVMTMEEAAKIGD  252 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH------------------HhcCCEeCCHHHHHhcCC
Confidence            35899999999999999999999999999999998765431100                  0111 2346788999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHHHHHhCCCeEEEEecCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECGHLGGLGIDVAWT  290 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g~i~ga~lDV~~~  290 (346)
                      +|+.+.    .+.++|+.+.|..||+|++|+|+||+.+ ||.++|.+++.+.+..+..+|+|.-
T Consensus       253 VVItaT----G~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       253 IFITAT----GNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             EEEECC----CCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            998743    4688999999999999999999999998 9999999999888888899999873

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.53  E-value=1.1e-14  Score=137.94  Aligned_cols=93  Identities=28%  Similarity=0.389  Sum_probs=76.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (346)
                      ..|+||||||||+|.||+++|++|+++|++|+++++...+.                  ..+...+ ...++++++++||
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~------------------~~A~~~G~~v~sl~Eaak~AD   73 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSF------------------EVAKADGFEVMSVSEAVRTAQ   73 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhh------------------HHHHHcCCEECCHHHHHhcCC
Confidence            57999999999999999999999999999999998653221                  0111111 2358999999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      +|++|+|+ ++|+++++.+.+..||+|++|+-.
T Consensus        74 VV~llLPd-~~t~~V~~~eil~~MK~GaiL~f~  105 (335)
T PRK13403         74 VVQMLLPD-EQQAHVYKAEVEENLREGQMLLFS  105 (335)
T ss_pred             EEEEeCCC-hHHHHHHHHHHHhcCCCCCEEEEC
Confidence            99999996 778999999999999999987644

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.38  E-value=1.3e-12  Score=129.20  Aligned_cols=155  Identities=21%  Similarity=0.254  Sum_probs=105.5

Q ss_pred             cCccCCcc-chhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEec
Q 019081           83 FGVGLEGV-DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF  161 (346)
Q Consensus        83 ~~~G~d~i-d~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~  161 (346)
                      .++|+..+ .+....+.+++|.|++...+   .+.-|...+.-.+....+.      +.      .+..+.|++|+|+|+
T Consensus       156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~---K~~~dn~~gt~~s~~~ai~------ra------t~~~l~Gk~VlViG~  220 (425)
T PRK05476        156 TTTGVHRLYAMAKDGALKFPAINVNDSVT---KSKFDNRYGTGESLLDGIK------RA------TNVLIAGKVVVVAGY  220 (425)
T ss_pred             chHHHHHHHHHHHcCCCCCCEEecCCccc---CccccccHHHHhhhHHHHH------Hh------ccCCCCCCEEEEECC
Confidence            46777665 22223457899999988733   3322222111111111110      00      124589999999999


Q ss_pred             CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccC
Q 019081          162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG  241 (346)
Q Consensus       162 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~  241 (346)
                      |.||+.+|++|+++|++|+++|+++.+...                 .........+++++++.+|+|+.+.    .+.+
T Consensus       221 G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~-----------------A~~~G~~v~~l~eal~~aDVVI~aT----G~~~  279 (425)
T PRK05476        221 GDVGKGCAQRLRGLGARVIVTEVDPICALQ-----------------AAMDGFRVMTMEEAAELGDIFVTAT----GNKD  279 (425)
T ss_pred             CHHHHHHHHHHHhCCCEEEEEcCCchhhHH-----------------HHhcCCEecCHHHHHhCCCEEEECC----CCHH
Confidence            999999999999999999999987643210                 0000012346889999999998754    4577


Q ss_pred             CCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHH
Q 019081          242 IVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH  273 (346)
Q Consensus       242 li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~  273 (346)
                      +|+.+.|..||+|++++|+++... +|.++|.+
T Consensus       280 vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        280 VITAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            999999999999999999999886 78877754

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.28  E-value=1.4e-12  Score=113.23  Aligned_cols=115  Identities=19%  Similarity=0.338  Sum_probs=86.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+|.+|+.+|++|...|++|.+|||+..+..                 .+..... ...++.|++++||+|+++
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~-----------------~~~~~g~~~~~s~~e~~~~~dvvi~~   64 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAE-----------------ALAEAGAEVADSPAEAAEQADVVILC   64 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHH-----------------HHHHTTEEEESSHHHHHHHBSEEEE-
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhh-----------------hhHHhhhhhhhhhhhHhhcccceEee
Confidence            5899999999999999999999999999998764421                 1111111 346899999999999999


Q ss_pred             ecCCccccCCCCH-HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          233 LSLNKQTAGIVNK-SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       233 lPlt~~T~~li~~-~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      +|..++++.++.. +.++.+++|.++||++....-....+.+.+.+..+.  .+|.
T Consensus        65 v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (163)
T PF03446_consen   65 VPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA  118 (163)
T ss_dssp             SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred             cccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence            9987877776532 367889999999999999999999999999876654  5675

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.27  E-value=8.9e-12  Score=116.94  Aligned_cols=115  Identities=20%  Similarity=0.302  Sum_probs=97.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~  231 (346)
                      .+||+||+|.||..+|++|..-|+.|.+|||++.+..                 +.....+  ...+..|+.++||+|++
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~-----------------~~~~~~Ga~~a~s~~eaa~~aDvVit   63 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAA-----------------ELLAAAGATVAASPAEAAAEADVVIT   63 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhh-----------------HHHHHcCCcccCCHHHHHHhCCEEEE
Confidence            4799999999999999999999999999999876521                 1111212  34677899999999999


Q ss_pred             eecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          232 CLSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       232 ~lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      |+|..++.+.++.  ...++.||+|+++||+|.-+.-....+.++++++.+.  .||.
T Consensus        64 mv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA  119 (286)
T COG2084          64 MLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA  119 (286)
T ss_pred             ecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence            9999999888875  5688999999999999999999999999999998875  5674

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.27  E-value=9.8e-12  Score=106.99  Aligned_cols=105  Identities=23%  Similarity=0.354  Sum_probs=71.7

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      ...+.||++.|+|||.+|+.+|+.|+++|++|++++..+....+.                 .-......+++++++++|
T Consensus        18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA-----------------~~dGf~v~~~~~a~~~ad   80 (162)
T PF00670_consen   18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQA-----------------AMDGFEVMTLEEALRDAD   80 (162)
T ss_dssp             -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH-----------------HHTT-EEE-HHHHTTT-S
T ss_pred             ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHh-----------------hhcCcEecCHHHHHhhCC
Confidence            356899999999999999999999999999999999865432110                 001112357999999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHH
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH  273 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~  273 (346)
                      +++.+.    -.++++..+.|.+||+|+++.|++.-.. +|.+.|.+
T Consensus        81 i~vtaT----G~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   81 IFVTAT----GNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             EEEE-S----SSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             EEEECC----CCccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            998864    3467899999999999999999987655 56655544

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.22  E-value=1.8e-11  Score=116.03  Aligned_cols=110  Identities=16%  Similarity=0.241  Sum_probs=87.8

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEee
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~l  233 (346)
                      +|||||+|.||+.+|+.+...|++|++||++..+..                 .+..... ...+..+++++||+|++++
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~-----------------~~~~~g~~~~~~~~~~~~~aDivi~~v   63 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVAD-----------------ELLAAGAVTAETARQVTEQADVIFTMV   63 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHCCCcccCCHHHHHhcCCEEEEec
Confidence            589999999999999999999999999998764311                 1111111 2357889999999999999


Q ss_pred             cCCccccCCC-C-HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          234 SLNKQTAGIV-N-KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       234 Plt~~T~~li-~-~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      |.++.++.++ . ...+..+++|.++||+|+....+.+++.+.+++..+.
T Consensus        64 p~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        64 PDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            9877777664 3 3357789999999999999998889999999987554

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.20  E-value=3.1e-11  Score=114.55  Aligned_cols=111  Identities=16%  Similarity=0.274  Sum_probs=88.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+|.||+.+|+.+...|++|++||++..+..                 ....... ...++++++++||+|+++
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~-----------------~~~~~g~~~~~~~~e~~~~~d~vi~~   65 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVA-----------------EVIAAGAETASTAKAVAEQCDVIITM   65 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHCCCeecCCHHHHHhcCCEEEEe
Confidence            4799999999999999999999999999998754311                 0111111 235788999999999999


Q ss_pred             ecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          233 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       233 lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +|.+..++.++.  ...+..+++|.++||+|+......+++.+.+.+..+.
T Consensus        66 vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~  116 (296)
T PRK11559         66 LPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE  116 (296)
T ss_pred             CCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            998887777764  3467789999999999999988888999999887654

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.17  E-value=5.9e-11  Score=112.90  Aligned_cols=115  Identities=15%  Similarity=0.230  Sum_probs=92.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+|.||..+|+.+...|++|++||++..+..                 .+..... ...+..+++++||+|+++
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~-----------------~~~~~g~~~~~s~~~~~~~aDvVi~~   64 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVD-----------------ALVDKGATPAASPAQAAAGAEFVITM   64 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHcCCcccCCHHHHHhcCCEEEEe
Confidence            3799999999999999999999999999999764421                 1111111 345788899999999999


Q ss_pred             ecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          233 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       233 lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      +|....++.++.  ...+..+++|.++||+|++.....+.+.+.+.+..+.  .+|.
T Consensus        65 vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda  119 (296)
T PRK15461         65 LPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV  119 (296)
T ss_pred             cCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence            998776776654  2456778999999999999999999999999988776  4675

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.16  E-value=4.7e-11  Score=114.50  Aligned_cols=123  Identities=26%  Similarity=0.369  Sum_probs=87.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (346)
                      ..|.|++|||||+|+||+++|+.|+.+|++|++++++..+...                 .+...+ ...+..+++++||
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~-----------------~A~~~G~~~~s~~eaa~~AD   75 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWK-----------------KAEADGFEVLTVAEAAKWAD   75 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHH-----------------HHHHCCCeeCCHHHHHhcCC
Confidence            5689999999999999999999999999999988765432110                 111111 2348899999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC-eEEEEecCCCCCCCCCCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL-GGLGIDVAWTEPFDPNDPI  299 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i-~ga~lDV~~~EPl~~~~pL  299 (346)
                      +|++++|.+.. ..+++++.+..|++|++| -.+.|--+..         +.+ -+...||+...|-.|.+.+
T Consensus        76 VVvLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~---------~~~~p~~~~~Vi~vaPn~Pg~~v  137 (330)
T PRK05479         76 VIMILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNIHF---------GQIVPPADVDVIMVAPKGPGHLV  137 (330)
T ss_pred             EEEEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCChhh---------ceeccCCCCcEEEeCCCCCchhh
Confidence            99999997654 777777788899999988 5555521111         111 1345678877776555533

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.14  E-value=1.6e-10  Score=110.13  Aligned_cols=113  Identities=17%  Similarity=0.209  Sum_probs=90.3

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhc---CCEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASK---ADVVV  230 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~---aDiV~  230 (346)
                      +|||||+|.||+.+|+.+...|++|++||++..+..                 ....... ...+.++++++   +|+|+
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~-----------------~~~~~g~~~~~s~~~~~~~~~~advVi   64 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVD-----------------VAGKLGITARHSLEELVSKLEAPRTIW   64 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHH-----------------HHHHCCCeecCCHHHHHHhCCCCCEEE
Confidence            699999999999999999999999999998754311                 1111111 23578888876   69999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      +++|..+.++.++ .+.+..+++|.++||+|+....+..++.+.+++..+.  .+|.
T Consensus        65 ~~vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vda  118 (299)
T PRK12490         65 VMVPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDC  118 (299)
T ss_pred             EEecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeC
Confidence            9999877888877 3567779999999999999999999999999887764  4774

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.09  E-value=2.7e-10  Score=112.48  Aligned_cols=104  Identities=21%  Similarity=0.349  Sum_probs=82.5

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a  226 (346)
                      +..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++.+..                  .+...+ ...++++.+..+
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~------------------~A~~~G~~~~~~~e~v~~a  258 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL------------------QAAMEGYEVMTMEEAVKEG  258 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH------------------HHHhcCCEEccHHHHHcCC
Confidence            3467999999999999999999999999999999998754421                  111112 224567888999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHH
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH  273 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~  273 (346)
                      |+|+.+.    .+.++++.+.+..||+|++++|+|++.+ +|..+|..
T Consensus       259 DVVI~at----G~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         259 DIFVTTT----GNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             CEEEECC----CCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            9999864    3556888888999999999999999876 77777664

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.04  E-value=7.5e-10  Score=105.53  Aligned_cols=113  Identities=19%  Similarity=0.251  Sum_probs=90.0

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhc---CCEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASK---ADVVV  230 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~---aDiV~  230 (346)
                      +|||||+|.||+.+|+.|...|.+|.+||++.....                 .+..... ...+.+++++.   +|+|+
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~-----------------~~~~~g~~~~~~~~e~~~~~~~~dvvi   64 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVE-----------------ALAEEGATGADSLEELVAKLPAPRVVW   64 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHH-----------------HHHHCCCeecCCHHHHHhhcCCCCEEE
Confidence            799999999999999999999999999999764321                 1111111 23578888875   69999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      +++|..+.++.++ ...+..+++|.++||++++.......+.+.+++..+.  .+|.
T Consensus        65 ~~v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da  118 (301)
T PRK09599         65 LMVPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV  118 (301)
T ss_pred             EEecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence            9999876777776 3567789999999999999999999999999988775  4675

>PLN02256 arogenate dehydrogenase

Probab=98.98  E-value=4.3e-09  Score=100.44  Aligned_cols=135  Identities=24%  Similarity=0.267  Sum_probs=89.2

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHh-hcCC
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKAD  227 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~aD  227 (346)
                      -.++++||||+|.||+.+|+.++..|++|+++|++....                   .....+  ...++++++ .++|
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~-------------------~a~~~gv~~~~~~~e~~~~~aD   94 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSD-------------------IAAELGVSFFRDPDDFCEEHPD   94 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHH-------------------HHHHcCCeeeCCHHHHhhCCCC
Confidence            366799999999999999999999999999999874210                   000111  235677776 4799


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCC---CCCCCCCCc
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP---NDPILKFKN  304 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~---~~pL~~~~n  304 (346)
                      +|++++|. ..+..++.+-....+++++++++++.+.-+..+++.+.+..+.      .+...-|...   ....+.-.+
T Consensus        95 vVilavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~  167 (304)
T PLN02256         95 VVLLCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLP  167 (304)
T ss_pred             EEEEecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCe
Confidence            99999995 4666666543355689999999999865455555555554321      1222234311   123455566


Q ss_pred             eEEccCC
Q 019081          305 VLITPHV  311 (346)
Q Consensus       305 viiTPH~  311 (346)
                      ++++|+.
T Consensus       168 ~~~~~~~  174 (304)
T PLN02256        168 FVYDKVR  174 (304)
T ss_pred             EEEecce
Confidence            7777753

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=98.96  E-value=1.2e-09  Score=110.28  Aligned_cols=128  Identities=16%  Similarity=0.098  Sum_probs=96.3

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc---CCEEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVVC  231 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~~  231 (346)
                      +||+||+|.||+.+|++|..-|++|.+|||+..+.......   .  .    ...........+++|+.+.   +|+|++
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~---~--~----~~Ga~~~~~a~s~~e~v~~l~~~dvIi~   78 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---A--K----KEGNLPLYGFKDPEDFVLSIQKPRSVII   78 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHh---h--h----hcCCcccccCCCHHHHHhcCCCCCEEEE
Confidence            69999999999999999999999999999986542110000   0  0    0000000124578888875   999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP  292 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  292 (346)
                      ++|..+.++.++ ...+..+++|.++||+|....-+...+.+.+++..+.....=|.-.++
T Consensus        79 ~v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         79 LVKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             ECCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            999998888888 467888999999999999999999999999999888644443554443

>PLN02712 arogenate dehydrogenase

Probab=98.94  E-value=1.1e-09  Score=114.76  Aligned_cols=110  Identities=22%  Similarity=0.284  Sum_probs=83.0

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh-
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS-  224 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~-  224 (346)
                      +.++.+++|||||+|.||+.+|+.++.+|++|++||++....  .                 ....+  ...++++++. 
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~--~-----------------a~~~Gv~~~~~~~el~~~  424 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSD--E-----------------AQKLGVSYFSDADDLCEE  424 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHH--H-----------------HHHcCCeEeCCHHHHHhc
Confidence            467889999999999999999999999999999999863210  0                 00111  2357888776 


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      .||+|++|+|. ..+..++.+-....||+|+++++++.+.-...+.+.+.+..
T Consensus       425 ~aDvVILavP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        425 HPEVILLCTSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             CCCEEEECCCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            59999999994 67788877655557999999999998874445555555444

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.92  E-value=7.8e-09  Score=101.33  Aligned_cols=102  Identities=19%  Similarity=0.309  Sum_probs=74.7

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDi  228 (346)
                      .+.+++|.|+|+|.+|+.+++.++.+|++|.++|++..+.......   +       ..... ......++.+.++++|+
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~---~-------g~~v~~~~~~~~~l~~~l~~aDv  233 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAE---F-------GGRIHTRYSNAYEIEDAVKRADL  233 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh---c-------CceeEeccCCHHHHHHHHccCCE
Confidence            3677889999999999999999999999999999875431100000   0       00000 00122457788899999


Q ss_pred             EEEeecCC-ccccCCCCHHHHccCCCCcEEEEcC
Q 019081          229 VVCCLSLN-KQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       229 V~~~lPlt-~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      |+.+++.+ ..+..+++++.++.||+++++||+|
T Consensus       234 VI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       234 LIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             EEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            99998653 3456789999999999999999997

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=98.89  E-value=3.9e-09  Score=100.24  Aligned_cols=113  Identities=14%  Similarity=0.165  Sum_probs=88.0

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEee
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~l  233 (346)
                      +|||||+|+||..+|+.|...|++|.+||++....                  .+..... ...+..++.++||+|++++
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~------------------~~~~~g~~~~~s~~~~~~~advVi~~v   63 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVAD------------------ELLSLGAVSVETARQVTEASDIIFIMV   63 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHH------------------HHHHcCCeecCCHHHHHhcCCEEEEeC
Confidence            69999999999999999999999999999864210                  1111111 2357888899999999999


Q ss_pred             cCCccccCCCCH--HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          234 SLNKQTAGIVNK--SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       234 Plt~~T~~li~~--~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      |..+..+.++..  ..+..+++|.++|++|....-....+.+.+++..+.  .+|.
T Consensus        64 ~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda  117 (292)
T PRK15059         64 PDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA  117 (292)
T ss_pred             CChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence            987776666532  356678999999999999998889999998887554  5665

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.86  E-value=5.7e-09  Score=99.37  Aligned_cols=112  Identities=13%  Similarity=0.236  Sum_probs=85.8

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHH---hhcCCEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF---ASKADVVV  230 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el---l~~aDiV~  230 (346)
                      +|||||+|.||..+|+.+...|++|.+|||+..+..                 .+..... ...+++++   +.++|+|+
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~-----------------~l~~~g~~~~~s~~~~~~~~~~~dvIi   64 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVK-----------------AMKEDRTTGVANLRELSQRLSAPRVVW   64 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHH-----------------HHHHcCCcccCCHHHHHhhcCCCCEEE
Confidence            799999999999999999999999999999764321                 1111111 12345454   45689999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      +++|.. .++.++ .+....+++|.++||++.+...+...+.+.+++..+.  .+|.
T Consensus        65 ~~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda  117 (298)
T TIGR00872        65 VMVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC  117 (298)
T ss_pred             EEcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence            999976 777777 4566778999999999999989999999999887664  4554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02858 fructose-bisphosphate aldolase

Probab=98.85  E-value=6e-09  Score=116.60  Aligned_cols=119  Identities=19%  Similarity=0.173  Sum_probs=95.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV  230 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~  230 (346)
                      +.++||+||+|.||..+|++|...|++|.+|||+..+..                 .+..... ...+..++.++||+|+
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~-----------------~l~~~Ga~~~~s~~e~a~~advVi   65 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLME-----------------KFCELGGHRCDSPAEAAKDAAALV   65 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHcCCeecCCHHHHHhcCCEEE
Confidence            457899999999999999999999999999999765421                 1111111 3468999999999999


Q ss_pred             EeecCCccccCCC--CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          231 CCLSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       231 ~~lPlt~~T~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      +|+|..+.++.++  ....+..+++|.++|++|....-....+.+.+.+..-....+|.
T Consensus        66 ~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         66 VVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             EEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            9999888888876  34577889999999999999999999999999876521236776

>PLN02858 fructose-bisphosphate aldolase

Probab=98.84  E-value=5.3e-09  Score=117.02  Aligned_cols=116  Identities=16%  Similarity=0.169  Sum_probs=93.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  231 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~  231 (346)
                      .++|||||+|.||..+|++|...|++|++||++..+..                 .+..... ...+..+++++||+|++
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~-----------------~l~~~Ga~~~~s~~e~~~~aDvVi~  386 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLV-----------------RFENAGGLAGNSPAEVAKDVDVLVI  386 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHHcCCeecCCHHHHHhcCCEEEE
Confidence            47899999999999999999999999999998764321                 1111111 24688899999999999


Q ss_pred             eecCCccccCCC--CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh--CCCeEEEEec
Q 019081          232 CLSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC--GHLGGLGIDV  287 (346)
Q Consensus       232 ~lPlt~~T~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~--g~i~ga~lDV  287 (346)
                      |+|....++.++  +...+..+++|.++||+|....-..+.+.+.+.+  ..+.  .+|.
T Consensus       387 ~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA  444 (1378)
T PLN02858        387 MVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA  444 (1378)
T ss_pred             ecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence            999888888887  3457888999999999999998888999999887  3333  5665

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.82  E-value=1.3e-08  Score=101.19  Aligned_cols=149  Identities=20%  Similarity=0.253  Sum_probs=93.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH-----------
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-----------  222 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----------  222 (346)
                      ++|+|||+|.||..+|..|+..|++|++||++......-         ..+.+.      .....++++           
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l---------~~g~~~------~~e~~l~~~l~~~~~~g~l~   68 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTI---------NRGEIH------IVEPDLDMVVKTAVEGGYLR   68 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH---------HCCCCC------cCCCCHHHHHHHHhhcCcee
Confidence            689999999999999999999999999999876532110         000000      001223333           


Q ss_pred             ----hhcCCEEEEeecCCc------cccCCC--CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe-------EE
Q 019081          223 ----ASKADVVVCCLSLNK------QTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG-------GL  283 (346)
Q Consensus       223 ----l~~aDiV~~~lPlt~------~T~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~-------ga  283 (346)
                          ++.||+|++|+|...      +...+.  -+.....+++|+++|+.|.-.+-..+.+...|.+....       |.
T Consensus        69 ~~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~  148 (415)
T PRK11064         69 ATTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGE  148 (415)
T ss_pred             eecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccC
Confidence                347999999999531      222222  13456678999999999999988888888877764221       11


Q ss_pred             EEe---cCCCCCCCCCCCC---CCCCceEEccCCCCCcHHHHHHH
Q 019081          284 GID---VAWTEPFDPNDPI---LKFKNVLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       284 ~lD---V~~~EPl~~~~pL---~~~~nviiTPH~a~~t~~~~~~~  322 (346)
                      +.|   ++.+|-+.+...+   ...+.++     ||.++++.+++
T Consensus       149 ~~~f~v~~~PE~~~~G~~~~~~~~~~~vv-----gG~~~~~~~~~  188 (415)
T PRK11064        149 QADINIAYCPERVLPGQVMVELIKNDRVI-----GGMTPVCSARA  188 (415)
T ss_pred             CCCeEEEECCCccCCCChhhhhcCCCEEE-----EeCCHHHHHHH
Confidence            233   4566656554433   3334432     45555555444

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=98.82  E-value=6.9e-09  Score=104.49  Aligned_cols=121  Identities=16%  Similarity=0.219  Sum_probs=92.7

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh---cCCEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~  230 (346)
                      .+|||||+|.||..+|+.|...|++|.+|||+..........    . .    .... ......+++++++   ++|+|+
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~----~-~----~~g~-~i~~~~s~~e~v~~l~~~d~Ii   71 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKK----A-K----EGNT-RVKGYHTLEELVNSLKKPRKVI   71 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh----h-h----hcCC-cceecCCHHHHHhcCCCCCEEE
Confidence            479999999999999999999999999999976542110000    0 0    0000 0012468888886   589999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      +++|....++.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+.  .+|+
T Consensus        72 l~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~--flda  125 (470)
T PTZ00142         72 LLIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGIL--YLGM  125 (470)
T ss_pred             EEeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEcC
Confidence            9999888888888 4567789999999999999999999999999998886  4553

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.80  E-value=9.2e-09  Score=95.87  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=95.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  228 (346)
                      .-+.+++|+||+|.+|..++..|...|++|++|||+....                 +++.+... ...+..|+.+.||+
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~-----------------~~f~~~Ga~v~~sPaeVae~sDv   94 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKC-----------------KEFQEAGARVANSPAEVAEDSDV   94 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHH-----------------HHHHHhchhhhCCHHHHHhhcCE
Confidence            3467899999999999999999999999999999976542                 12222222 35788999999999


Q ss_pred             EEEeecCCccccCCCCH--HHHccCCCCcEE-EEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          229 VVCCLSLNKQTAGIVNK--SFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~--~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      |+.++|.....+.++..  ..|+..++|... |+.|.-..--...|.+++......  .+|-
T Consensus        95 vitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA  154 (327)
T KOG0409|consen   95 VITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA  154 (327)
T ss_pred             EEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence            99999988888877643  467778888777 899998888888999999988654  4564

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.78  E-value=1e-08  Score=97.16  Aligned_cols=111  Identities=20%  Similarity=0.200  Sum_probs=84.5

Q ss_pred             EEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCC
Q 019081          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLN  236 (346)
Q Consensus       158 IiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt  236 (346)
                      |||+|.||..+|+.|...|++|.+|||+..+..                 .+..... ...++.+++++||+|++++|..
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~-----------------~l~~~g~~~~~s~~~~~~~advVil~vp~~   63 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVE-----------------EAVAAGAQAAASPAEAAEGADRVITMLPAG   63 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHH-----------------HHHHcCCeecCCHHHHHhcCCEEEEeCCCh
Confidence            689999999999999999999999998754311                 1111111 2357889999999999999976


Q ss_pred             ccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          237 KQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       237 ~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      ..++.++.  ...+..+++|.++||++....-..+.+.+.+++..+.  .+|.
T Consensus        64 ~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda  114 (288)
T TIGR01692        64 QHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA  114 (288)
T ss_pred             HHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence            77676663  4556678999999999977766778888888776554  4664

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.78  E-value=2.5e-08  Score=99.82  Aligned_cols=133  Identities=28%  Similarity=0.434  Sum_probs=89.5

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEE
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~  230 (346)
                      .+++||| +|.||+.+|+.++..|++|.+++++.....                 ......+  ...+..+.+++||+|+
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~-----------------~~a~~~gv~~~~~~~e~~~~aDvVI   63 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGK-----------------EVAKELGVEYANDNIDAAKDADIVI   63 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHH-----------------HHHHHcCCeeccCHHHHhccCCEEE
Confidence            3799998 899999999999999999999998653310                 0111111  1346778899999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCC-CCCCCCCCCceEEcc
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-PNDPILKFKNVLITP  309 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-~~~pL~~~~nviiTP  309 (346)
                      +++|. ..+..++ .+....+++++++++++.......+++.+.+..+      ..+...-|+. +..+++.-..+++||
T Consensus        64 lavp~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~------~~~V~~HPmaGp~~~~~~g~~~il~p  135 (437)
T PRK08655         64 ISVPI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEG------VEILPTHPMFGPRTPSLKGQVVILTP  135 (437)
T ss_pred             EecCH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCC------CEEEEcCCCCCCCCcccCCCEEEEec
Confidence            99996 3455555 4455678999999999875544444555444322      1222223431 234567778899999


Q ss_pred             CC
Q 019081          310 HV  311 (346)
Q Consensus       310 H~  311 (346)
                      +-
T Consensus       136 ~~  137 (437)
T PRK08655        136 TE  137 (437)
T ss_pred             CC
Confidence            75

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.78  E-value=7.8e-08  Score=94.47  Aligned_cols=81  Identities=19%  Similarity=0.280  Sum_probs=64.7

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      ..++|+||| +|.||+.+|+.++..|..|.+||++..                             .+.++++++||+|+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------------------------~~~~~~~~~aDlVi  147 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------------------------DRAEDILADAGMVI  147 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------------------------hhHHHHHhcCCEEE
Confidence            458999999 999999999999999999999997421                             24567788999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +|+|.. .+..++. + +..+++|+++++++.-.
T Consensus       148 lavP~~-~~~~~~~-~-l~~l~~~~iv~Dv~SvK  178 (374)
T PRK11199        148 VSVPIH-LTEEVIA-R-LPPLPEDCILVDLTSVK  178 (374)
T ss_pred             EeCcHH-HHHHHHH-H-HhCCCCCcEEEECCCcc
Confidence            999965 3455552 3 44489999999996643

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.77  E-value=3.4e-08  Score=93.78  Aligned_cols=153  Identities=17%  Similarity=0.140  Sum_probs=90.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-c--chhhhccccccc-cc-ccc--CCc-CCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-S--SALAVKNGIIDD-LV-DEK--GCH-EDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~--~~~~~~~~~~~~-~~-~~~--~~~-~~l~ell~~  225 (346)
                      ++|||||+|.||..+|+.+...|++|++||++.......... .  ....+..+.+.. .. ...  ... .+. +.++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD   83 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence            589999999999999999999999999999876432100000 0  000000000000 00 000  112 234 56899


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHh-CCCeEEEEecCCCCCCCCCCCCCCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLEC-GHLGGLGIDVAWTEPFDPNDPILKFK  303 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EPl~~~~pL~~~~  303 (346)
                      ||+|+.++|..++.+..+-++..+.++++++|+ |+|.-.   ...+.+.+.. .++.|  +-.+  .|+      +..+
T Consensus        84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~~~r~~g--~h~~--~pp------~~~~  150 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQRPQQVIG--MHFM--NPP------PIMK  150 (295)
T ss_pred             CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCCCcceEE--Eecc--CCc------ccCc
Confidence            999999999888888877777777799999887 776654   4456666543 34433  3222  221      2234


Q ss_pred             ceEEccCCCCCcHHHHHH
Q 019081          304 NVLITPHVGGVTEHSYRS  321 (346)
Q Consensus       304 nviiTPH~a~~t~~~~~~  321 (346)
                      -+.+.|+-.+ +++..++
T Consensus       151 lveiv~g~~t-~~e~~~~  167 (295)
T PLN02545        151 LVEIIRGADT-SDEVFDA  167 (295)
T ss_pred             eEEEeCCCCC-CHHHHHH
Confidence            4777777332 3444433

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.77  E-value=1.9e-08  Score=95.71  Aligned_cols=111  Identities=24%  Similarity=0.369  Sum_probs=86.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      -++||++.|.|||-+|+-+|.+++++|++|++.+..+....+.                ..+ ......+++....+||+
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA----------------~Md-Gf~V~~m~~Aa~~gDif  268 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA----------------AMD-GFRVMTMEEAAKTGDIF  268 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH----------------hhc-CcEEEEhHHhhhcCCEE
Confidence            5799999999999999999999999999999987655432110                001 11346789999999999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHHH-HHhCCCe
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHY-LECGHLG  281 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~a-L~~g~i~  281 (346)
                      +.+    ..++++|..+.|..||+|+++-|.+.-.+ ||.+.|-+- ++...+.
T Consensus       269 iT~----TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr  318 (420)
T COG0499         269 VTA----TGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR  318 (420)
T ss_pred             EEc----cCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence            985    45778999999999999999999998776 677666543 4444454

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.76  E-value=6.5e-09  Score=102.49  Aligned_cols=96  Identities=25%  Similarity=0.258  Sum_probs=70.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC------CccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS------WASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (346)
                      ..|.||||+|||+|.+|++-|..++..|++|++--|.      ..+..                 ..........+++|+
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~-----------------kA~~dGF~v~~~~Ea   94 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWR-----------------KATENGFKVGTYEEL   94 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHH-----------------HHHhcCCccCCHHHH
Confidence            5799999999999999998888888888887732221      11100                 000011134689999


Q ss_pred             hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +++||+|++.+|.+ . .+.+..+.+..||+|++|. .|.|=
T Consensus        95 ~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF  133 (487)
T PRK05225         95 IPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF  133 (487)
T ss_pred             HHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence            99999999999988 3 7788899999999999774 34443

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.76  E-value=1.2e-08  Score=97.77  Aligned_cols=96  Identities=26%  Similarity=0.332  Sum_probs=68.0

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV  229 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV  229 (346)
                      |+||+|||||+|+||+++|+.|+.+|++|++++++......                ... ..+ ...+..+++++||+|
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~----------------~a~-~~Gv~~~s~~ea~~~ADiV   63 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWK----------------KAT-EDGFKVGTVEEAIPQADLI   63 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHH----------------HHH-HCCCEECCHHHHHhcCCEE
Confidence            57899999999999999999999999998776554321100                000 111 224688889999999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      ++++|.... ...+.++....|+++. +|.++-|=-
T Consensus        64 vLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~   97 (314)
T TIGR00465        64 MNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFN   97 (314)
T ss_pred             EEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCcc
Confidence            999995433 3344455667788886 788877754

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.76  E-value=3.2e-08  Score=98.68  Aligned_cols=151  Identities=11%  Similarity=0.069  Sum_probs=92.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      .+|||||+|.||..+|..++. |++|++||++..+...-...  ..+..+..+.++..... ...+..+.+++||++++|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G--~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~   83 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNG--VDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT   83 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCc--CCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence            589999999999999999877 79999999976542110000  00000000011101001 122334568999999999


Q ss_pred             ecCCc------cccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh---CCCeE-EEEecCCCCCCCCCC---
Q 019081          233 LSLNK------QTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC---GHLGG-LGIDVAWTEPFDPND---  297 (346)
Q Consensus       233 lPlt~------~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~---g~i~g-a~lDV~~~EPl~~~~---  297 (346)
                      +|...      +...++.  +...+.+++|.++|+.|.-.+-..+.++..+.+   |.-.+ ...=+|.+||+.+..   
T Consensus        84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~  163 (425)
T PRK15182         84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKH  163 (425)
T ss_pred             cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccc
Confidence            99542      2234442  345677899999999999999888877665443   22211 111146789987764   


Q ss_pred             CCCCCCceEE
Q 019081          298 PILKFKNVLI  307 (346)
Q Consensus       298 pL~~~~nvii  307 (346)
                      .+.+.|.++.
T Consensus       164 ~~~~~~riv~  173 (425)
T PRK15182        164 RLTNIKKITS  173 (425)
T ss_pred             cccCCCeEEE
Confidence            4555566644

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.75  E-value=1.8e-08  Score=96.31  Aligned_cols=85  Identities=22%  Similarity=0.252  Sum_probs=68.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .+++|||||+|.+|+++|+.|...|++|.+|+|+..                             .++++++++||+|++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------------------------~~~~~~~~~advvi~   53 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------------------------LSLAAVLADADVIVS   53 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------------------------CCHHHHHhcCCEEEE
Confidence            356899999999999999999999999999998532                             257788899999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL  266 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~v  266 (346)
                      ++|. +..+.+++.-.-..+++++++|++++|-..
T Consensus        54 ~vp~-~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~   87 (308)
T PRK14619         54 AVSM-KGVRPVAEQVQALNLPPETIIVTATKGLDP   87 (308)
T ss_pred             ECCh-HHHHHHHHHHHHhcCCCCcEEEEeCCcccC
Confidence            9996 567777633211147899999999885443

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.73  E-value=1.7e-08  Score=101.56  Aligned_cols=117  Identities=13%  Similarity=0.195  Sum_probs=88.3

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc-cc-cCCcCCHHHHh---hcCCEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DE-KGCHEDIFEFA---SKADVV  229 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~ell---~~aDiV  229 (346)
                      .|||||+|.||+.+|+++...|++|.+|||+..+.....             .... .. .....+++++.   +++|+|
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~-------------~~~~~g~~~~~~~s~~e~v~~l~~~dvI   67 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFL-------------AEHAKGKKIVGAYSIEEFVQSLERPRKI   67 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH-------------hhccCCCCceecCCHHHHHhhcCCCCEE
Confidence            389999999999999999999999999999765421100             0000 00 01234566665   468999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      ++++|..+.++.++ .+.+..+++|.++||++....-+...+.+.+.+..+.  .+|+
T Consensus        68 il~v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda  122 (467)
T TIGR00873        68 MLMVKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS  122 (467)
T ss_pred             EEECCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence            99999877787777 4566778999999999999989999999999887775  4554

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.69  E-value=1.6e-07  Score=84.47  Aligned_cols=111  Identities=25%  Similarity=0.310  Sum_probs=81.1

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhh-c
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-K  225 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~  225 (346)
                      +.+++||+++|+|+|+||+.+|+.|..+|++|+++|++.....                 ......+ ...+.++++. +
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~-----------------~~~~~~g~~~v~~~~l~~~~   85 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVA-----------------RAAELFGATVVAPEEIYSVD   85 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH-----------------HHHHHcCCEEEcchhhcccc
Confidence            4679999999999999999999999999999999998653210                 0111111 1223455554 7


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      ||+++.+..     .++|+++.++.|+ .-+++.-+-+.+-+ ..-.+.|++..|..
T Consensus        86 ~Dv~vp~A~-----~~~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~  135 (200)
T cd01075          86 ADVFAPCAL-----GGVINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILY  135 (200)
T ss_pred             CCEEEeccc-----ccccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEE
Confidence            999986654     3589999999998 45788888888766 55667788777753

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.67  E-value=8.1e-08  Score=91.76  Aligned_cols=147  Identities=20%  Similarity=0.297  Sum_probs=86.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      .++|+|||+|.||..+|+.++..|.  +|++||++........        ..    ....  ....++++.+++||+|+
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~--------~~----g~~~--~~~~~~~~~~~~aDvVi   71 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR--------EL----GLGD--RVTTSAAEAVKGADLVI   71 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH--------hC----CCCc--eecCCHHHHhcCCCEEE
Confidence            4689999999999999999988785  8999998754311000        00    0000  01246778889999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE-EEEecC---CCC---CCCCCCCCCCCC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG-LGIDVA---WTE---PFDPNDPILKFK  303 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g-a~lDV~---~~E---Pl~~~~pL~~~~  303 (346)
                      +++|.. .+..++ ++....++++.++++++...    ..+++++....-.+ -.+...   ..|   |-....+|+.-.
T Consensus        72 iavp~~-~~~~v~-~~l~~~l~~~~iv~dvgs~k----~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~  145 (307)
T PRK07502         72 LCVPVG-ASGAVA-AEIAPHLKPGAIVTDVGSVK----ASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENR  145 (307)
T ss_pred             ECCCHH-HHHHHH-HHHHhhCCCCCEEEeCccch----HHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCC
Confidence            999963 333332 34446689999999986543    23333333221111 123322   111   111112555567


Q ss_pred             ceEEccCCCCCcHHHHH
Q 019081          304 NVLITPHVGGVTEHSYR  320 (346)
Q Consensus       304 nviiTPH~a~~t~~~~~  320 (346)
                      ++++||+-++ +.+..+
T Consensus       146 ~~~l~~~~~~-~~~~~~  161 (307)
T PRK07502        146 WCILTPPEGT-DPAAVA  161 (307)
T ss_pred             eEEEeCCCCC-CHHHHH
Confidence            7899997544 344433

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.66  E-value=3e-07  Score=89.88  Aligned_cols=122  Identities=20%  Similarity=0.285  Sum_probs=82.4

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHcc-CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      .-.||+|||+ |.||+.+|+.++. +|.+|++||+...                           ...++++.+++||+|
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------------------------~~~~~~~~v~~aDlV   55 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------------------------GSLDPATLLQRADVL   55 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------------------------ccCCHHHHhcCCCEE
Confidence            4579999999 9999999999985 5999999997421                           113567889999999


Q ss_pred             EEeecCCccccCCCCHH--HHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCC--CCCCCCCCCCce
Q 019081          230 VCCLSLNKQTAGIVNKS--FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF--DPNDPILKFKNV  305 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~--~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl--~~~~pL~~~~nv  305 (346)
                      ++|+|.. .+..++.+-  ....+|+|+++++++.-.    ...++++.....     ++...-|+  |..+.++.--++
T Consensus        56 ilavPv~-~~~~~l~~l~~~~~~l~~~~iVtDVgSvK----~~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~  125 (370)
T PRK08818         56 IFSAPIR-HTAALIEEYVALAGGRAAGQLWLDVTSIK----QAPVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVM  125 (370)
T ss_pred             EEeCCHH-HHHHHHHHHhhhhcCCCCCeEEEECCCCc----HHHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeE
Confidence            9999953 444444321  112479999999997644    223333322211     23333454  223466666788


Q ss_pred             EEccC
Q 019081          306 LITPH  310 (346)
Q Consensus       306 iiTPH  310 (346)
                      ++||.
T Consensus       126 iltp~  130 (370)
T PRK08818        126 VVCEA  130 (370)
T ss_pred             EEeCC
Confidence            99986

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.65  E-value=4.2e-07  Score=85.55  Aligned_cols=119  Identities=24%  Similarity=0.369  Sum_probs=86.5

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||.|.+ |+.+|.+|...|+.|++....                              ..++.+.+++|
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~------------------------------t~~l~~~~~~A  202 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK------------------------------TRDLAAHTRQA  202 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC------------------------------CCCHHHHhhhC
Confidence            46899999999999999 999999999999999986532                              13678899999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|++++|    +.++++.+.   +|+|+++||+|--.+.          +|++.|   ||-..+-        ..---.
T Consensus       203 DIVV~avG----~~~~i~~~~---ik~gavVIDVGin~~~----------~gkl~G---DVd~~~v--------~~~a~~  254 (285)
T PRK14189        203 DIVVAAVG----KRNVLTADM---VKPGATVIDVGMNRDD----------AGKLCG---DVDFAGV--------KEVAGY  254 (285)
T ss_pred             CEEEEcCC----CcCccCHHH---cCCCCEEEEccccccC----------CCCeeC---CccHHHH--------HhhceE
Confidence            99999998    456898855   7999999999865532          255544   5531110        111246


Q ss_pred             EccCCCCCcHHHHHHHHH
Q 019081          307 ITPHVGGVTEHSYRSMAK  324 (346)
Q Consensus       307 iTPH~a~~t~~~~~~~~~  324 (346)
                      +||--||.-+-+...+.+
T Consensus       255 iTPVPGGVGp~T~a~Ll~  272 (285)
T PRK14189        255 ITPVPGGVGPMTITMLLV  272 (285)
T ss_pred             ecCCCCCchHHHHHHHHH
Confidence            899777765544433333

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.64  E-value=9e-08  Score=90.25  Aligned_cols=133  Identities=19%  Similarity=0.287  Sum_probs=81.0

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP  234 (346)
                      +|||||+|.||+.+|..|+..|++|++||++.........        .    .....  ...+. +.+++||+|++++|
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~--------~----g~~~~--~~~~~-~~~~~aDlVilavp   66 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE--------R----GLVDE--ASTDL-SLLKDCDLVILALP   66 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------C----CCccc--ccCCH-hHhcCCCEEEEcCC
Confidence            7999999999999999999899999999986543110000        0    00000  11233 46789999999999


Q ss_pred             CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCC---------CCCCCCCCce
Q 019081          235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP---------NDPILKFKNV  305 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~---------~~pL~~~~nv  305 (346)
                      .. .+..++ ++....+++++++++++.-..    ..++++....-.  .+..   -|+.-         ..-|+.-.++
T Consensus        67 ~~-~~~~~~-~~l~~~l~~~~ii~d~~Svk~----~~~~~~~~~~~~--~v~~---HPm~G~~~~g~~~a~~~lf~g~~~  135 (279)
T PRK07417         67 IG-LLLPPS-EQLIPALPPEAIVTDVGSVKA----PIVEAWEKLHPR--FVGS---HPMAGTAESGVEAGQRGLFKNRPW  135 (279)
T ss_pred             HH-HHHHHH-HHHHHhCCCCcEEEeCcchHH----HHHHHHHHhhCC--ceee---CCcCCCCcchHHHhhHHHhCCCcE
Confidence            53 333333 455566889999999876442    234444332111  1221   13211         1125666788


Q ss_pred             EEccCCCC
Q 019081          306 LITPHVGG  313 (346)
Q Consensus       306 iiTPH~a~  313 (346)
                      ++||+-..
T Consensus       136 ~l~p~~~~  143 (279)
T PRK07417        136 VLTPTENT  143 (279)
T ss_pred             EEccCCCC
Confidence            99997553

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.63  E-value=1.5e-07  Score=89.13  Aligned_cols=145  Identities=13%  Similarity=0.117  Sum_probs=87.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccccc---chhhhcccccccc-----ccccCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS---SALAVKNGIIDDL-----VDEKGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~l~ell~~  225 (346)
                      ++|+|||+|.||..+|..+...|++|++||++..........-   ....++.+.+...     ........++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            5899999999999999999989999999998764321100000   0000000000000     0000013578889999


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEE-EEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCc
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  304 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  304 (346)
                      ||+|+.++|...+.+..+-.+..+.++++++| +|+|.-.+   ..+.+.++. .-.-.++..|  -|.      +..+=
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~--~Pv------~~~~L  149 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF--NPV------HKMKL  149 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC--CCc------ccCce
Confidence            99999999976655554444555678999877 78887554   456665532 2223456666  343      22344


Q ss_pred             eEEccC
Q 019081          305 VLITPH  310 (346)
Q Consensus       305 viiTPH  310 (346)
                      +.+.|+
T Consensus       150 ve~v~g  155 (288)
T PRK09260        150 VELIRG  155 (288)
T ss_pred             EEEeCC
Confidence            566665

>PLN02712 arogenate dehydrogenase

Probab=98.62  E-value=3.5e-08  Score=103.45  Aligned_cols=95  Identities=27%  Similarity=0.382  Sum_probs=70.9

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHh-hcC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKA  226 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~a  226 (346)
                      .-+.++|||||+|.||+.+|+.++.+|++|++||++....                   .....+  ...++++++ .+|
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~-------------------~A~~~Gv~~~~d~~e~~~~~a  109 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSL-------------------AARSLGVSFFLDPHDLCERHP  109 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHH-------------------HHHHcCCEEeCCHHHHhhcCC
Confidence            3455689999999999999999999999999999863221                   001111  235677765 569


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      |+|++|+|. ..+..++..-.+..||+|++|+|++.-.
T Consensus       110 DvViLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK  146 (667)
T PLN02712        110 DVILLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK  146 (667)
T ss_pred             CEEEEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc
Confidence            999999995 5677777665456799999999996433

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.60  E-value=2.4e-08  Score=85.75  Aligned_cols=90  Identities=29%  Similarity=0.389  Sum_probs=60.9

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV  229 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV  229 (346)
                      |.+|+|+|||||.-|++.|..|+..|++|++-.+...+..                 ..+.+.+ ...+..|+.++||+|
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~-----------------~~A~~~Gf~v~~~~eAv~~aDvV   64 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASW-----------------EKAKADGFEVMSVAEAVKKADVV   64 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHH-----------------HHHHHTT-ECCEHHHHHHC-SEE
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCH-----------------HHHHHCCCeeccHHHHHhhCCEE
Confidence            6799999999999999999999999999998776544210                 1111112 346899999999999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEE
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLV  258 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailI  258 (346)
                      .+.+|.. .-..+..++....||+|+.|+
T Consensus        65 ~~L~PD~-~q~~vy~~~I~p~l~~G~~L~   92 (165)
T PF07991_consen   65 MLLLPDE-VQPEVYEEEIAPNLKPGATLV   92 (165)
T ss_dssp             EE-S-HH-HHHHHHHHHHHHHS-TT-EEE
T ss_pred             EEeCChH-HHHHHHHHHHHhhCCCCCEEE
Confidence            9999943 334455667777899999765

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.59  E-value=3.3e-07  Score=88.05  Aligned_cols=127  Identities=13%  Similarity=0.101  Sum_probs=84.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchh--hhcccccccc-ccccCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGIIDDL-VDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~--~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV  229 (346)
                      ++|||||.|.||..+|..+...|++|+.||+++......... ...+  -++.+..... ........++++.+++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            689999999999999999999999999999876432110000 0000  0000000000 00111235888999999999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh-CCCeE
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC-GHLGG  282 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~-g~i~g  282 (346)
                      +-++|.+.+.+.-+-++..+.+++++ +|.++..+ +.-.++.++++. .++.|
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~p~R~~g  139 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATHPERCVV  139 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCCcccEEE
Confidence            99999999988888888888899999 44554443 466777777754 34433

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.59  E-value=2.7e-07  Score=78.71  Aligned_cols=113  Identities=19%  Similarity=0.261  Sum_probs=78.2

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccc--cCCcCCHHHHhhcC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKA  226 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~a  226 (346)
                      .+.+++++|+|+|.||+.+++.+...| .+|.++|++..+.....             ......  .....+..++++++
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~   82 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALA-------------ERFGELGIAIAYLDLEELLAEA   82 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH-------------HHHhhcccceeecchhhccccC
Confidence            467899999999999999999999886 78999998754321100             000000  01234677778999


Q ss_pred             CEEEEeecCCcc-ccC-CCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081          227 DVVVCCLSLNKQ-TAG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  280 (346)
Q Consensus       227 DiV~~~lPlt~~-T~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  280 (346)
                      |+|++++|.... ... .+...   .++++.+++|++..+...  .|.+.+++..+
T Consensus        83 Dvvi~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~  133 (155)
T cd01065          83 DLIINTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLET--PLLKEARALGA  133 (155)
T ss_pred             CEEEeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence            999999997653 222 23332   368999999998765443  88888887644

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.59  E-value=1.7e-07  Score=88.83  Aligned_cols=129  Identities=22%  Similarity=0.291  Sum_probs=89.2

Q ss_pred             ccccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||+++|||.| .+|+.+|.+|..-|+.|++++++.                              .++.++.++|
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t------------------------------~~l~e~~~~A  203 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS------------------------------TDAKALCRQA  203 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC------------------------------CCHHHHHhcC
Confidence            468999999999996 999999999999999999997632                              2577889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC--CCeEEEEecCCCCCCCCCCCCCCCCc
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG--HLGGLGIDVAWTEPFDPNDPILKFKN  304 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g--~i~ga~lDV~~~EPl~~~~pL~~~~n  304 (346)
                      |+|+++++..    +++....   +|+|+++||+|--.+.+         +|  ++.|   ||-..+-        .-.-
T Consensus       204 DIVIsavg~~----~~v~~~~---ik~GaiVIDvgin~~~~---------~g~~kl~G---Dvdf~~~--------~~~a  256 (301)
T PRK14194        204 DIVVAAVGRP----RLIDADW---LKPGAVVIDVGINRIDD---------DGRSRLVG---DVDFDSA--------LPVV  256 (301)
T ss_pred             CEEEEecCCh----hcccHhh---ccCCcEEEEecccccCC---------CCCcceec---ccchHHH--------Hhhc
Confidence            9999999854    3566655   79999999998654311         23  4443   5532110        0112


Q ss_pred             eEEccCCCCCcHHHHHHHHHHHHHHHHHH
Q 019081          305 VLITPHVGGVTEHSYRSMAKVVGDVALQL  333 (346)
Q Consensus       305 viiTPH~a~~t~~~~~~~~~~~~~ni~~~  333 (346)
                      -.+||-=||.-+-+...+.+..++..+++
T Consensus       257 ~~iTPVPGGVGp~Tva~L~~N~~~a~~~~  285 (301)
T PRK14194        257 SAITPVPGGVGPMTIAFLMKNTVTAARLQ  285 (301)
T ss_pred             ceecCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            45788777765544444444444443443

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.57  E-value=2.8e-07  Score=80.52  Aligned_cols=90  Identities=26%  Similarity=0.414  Sum_probs=74.9

Q ss_pred             cccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          149 ETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      .+|.|+++.|||.|.+ |..+|+.|...|++|.+.+|+.                              .++.+.+.+||
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------------------------~~l~~~l~~aD   89 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------------------------KNLKEHTKQAD   89 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------------------------hhHHHHHhhCC
Confidence            5799999999999986 8889999999999999988742                              25678899999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      +|+++++..    ++|+++.   ++++.++||+|...-+|       ..+|++.|
T Consensus        90 iVIsat~~~----~ii~~~~---~~~~~viIDla~prdvd-------~~~~~~~G  130 (168)
T cd01080          90 IVIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD-------KSGGKLVG  130 (168)
T ss_pred             EEEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence            999998743    2788886   58899999999998888       45666655

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.57  E-value=4.4e-07  Score=90.25  Aligned_cols=150  Identities=17%  Similarity=0.257  Sum_probs=89.5

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc---ccC---CcCCHHHHhhcCCE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKG---CHEDIFEFASKADV  228 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~l~ell~~aDi  228 (346)
                      +|||||+|.+|..+|..+...|++|++||++......-...  ..+.....+.+...   ..+   ...++.+++++||+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g--~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~adv   79 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKG--KSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADV   79 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcC--CCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCE
Confidence            79999999999999999999999999999876432110000  00000000000000   001   23577888999999


Q ss_pred             EEEeecCCccccC------CCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHH-Hh--CCCeEEEEec---CCCCCCC
Q 019081          229 VVCCLSLNKQTAG------IVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYL-EC--GHLGGLGIDV---AWTEPFD  294 (346)
Q Consensus       229 V~~~lPlt~~T~~------li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL-~~--g~i~ga~lDV---~~~EPl~  294 (346)
                      |++++|......+      +..  ......+++|.++|+.|.-.+-..+.+...+ ++  |.-.  +.|+   +.+|...
T Consensus        80 vii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~--~~d~~v~~~Pe~~~  157 (411)
T TIGR03026        80 IIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKL--GEDFYLAYNPEFLR  157 (411)
T ss_pred             EEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCC--CCCceEEECCCcCC
Confidence            9999995432111      221  3345568999999999977666677776544 44  2211  3343   2455443


Q ss_pred             CCC---CCCCCCceEEc
Q 019081          295 PND---PILKFKNVLIT  308 (346)
Q Consensus       295 ~~~---pL~~~~nviiT  308 (346)
                      +..   .++..+.+++.
T Consensus       158 ~G~~~~~~~~~~~iv~G  174 (411)
T TIGR03026       158 EGNAVHDLLNPDRIVGG  174 (411)
T ss_pred             CCChhhhhcCCCEEEEe
Confidence            333   34556677776

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.55  E-value=2.8e-07  Score=90.05  Aligned_cols=98  Identities=21%  Similarity=0.352  Sum_probs=67.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      ++|+|||+|.||.++|+.++..|++|.+|+++.........      ...    ...+.  ...++++++++||+|++++
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a------~~~----~~~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA------LGF----GVIDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH------hcC----CCCcc--cccCHHHHhcCCCEEEEeC
Confidence            47999999999999999999999998888876543110000      000    00000  1256788899999999999


Q ss_pred             cCCccccCCCCHHHHc-cCCCCcEEEEcCCCCC
Q 019081          234 SLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGL  265 (346)
Q Consensus       234 Plt~~T~~li~~~~l~-~mk~gailIN~sRg~~  265 (346)
                      |. ..+..++. +... .+++++++++++.-..
T Consensus        69 P~-~~~~~vl~-~l~~~~l~~~~ivtDv~SvK~   99 (359)
T PRK06545         69 PV-DATAALLA-ELADLELKPGVIVTDVGSVKG   99 (359)
T ss_pred             CH-HHHHHHHH-HHhhcCCCCCcEEEeCccccH
Confidence            96 45666653 2222 4789999999976654

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.53  E-value=3.3e-08  Score=77.76  Aligned_cols=89  Identities=33%  Similarity=0.480  Sum_probs=61.0

Q ss_pred             eEEEEecCHHHHHHHHHHccCC---CEEE-EEcCCCccccccccccchhhhccccccccccccC--CcC-CHHHHhhcCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFG---VKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHE-DIFEFASKAD  227 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~ell~~aD  227 (346)
                      |+||||+|+||.++++.+...|   .+|+ +++|++.+..                 ++....+  ... +..+++++||
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ad   63 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAA-----------------ELAKEYGVQATADDNEEAAQEAD   63 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHH-----------------HHHHHCTTEEESEEHHHHHHHTS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHH-----------------HHHHhhccccccCChHHhhccCC
Confidence            6899999999999999999999   8998 4588765421                 1222222  123 7889999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      +|++++|.. ....++. +. ....++.++|++.-|
T Consensus        64 vvilav~p~-~~~~v~~-~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   64 VVILAVKPQ-QLPEVLS-EI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             EEEE-S-GG-GHHHHHH-HH-HHHHTTSEEEEESTT
T ss_pred             EEEEEECHH-HHHHHHH-HH-hhccCCCEEEEeCCC
Confidence            999999953 3333322 22 456789999988644

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.53  E-value=1.5e-07  Score=87.68  Aligned_cols=95  Identities=22%  Similarity=0.324  Sum_probs=76.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      -+.||.+.|.|||.+|+..|+.|++||.+|++....+....+                 .+-+......++|+.++.||+
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQ-----------------AaMeG~~V~tm~ea~~e~dif  273 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQ-----------------AAMEGYEVTTLEEAIREVDIF  273 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHH-----------------HHhhccEeeeHHHhhhcCCEE
Confidence            368999999999999999999999999999997665432100                 011111357899999999999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      +.    |...+.+|..+.|.+||.++++.|++.-.+
T Consensus       274 VT----tTGc~dii~~~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  274 VT----TTGCKDIITGEHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             EE----ccCCcchhhHHHHHhCcCCcEEeccccccc
Confidence            98    456778999999999999999999987664

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.50  E-value=8.3e-07  Score=84.00  Aligned_cols=154  Identities=15%  Similarity=0.149  Sum_probs=91.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc---cchhhhcccccc-c-----cccccCCcCCHHHHhh
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIID-D-----LVDEKGCHEDIFEFAS  224 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~---~~~~~~~~~~~~-~-----~~~~~~~~~~l~ell~  224 (346)
                      ++|+|||.|.+|..+|..+...|.+|+.||++..........   ......+...+. .     .........++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            589999999999999999998899999999875431110000   000000000000 0     0000002357888899


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKF  302 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~  302 (346)
                      .||+|+.++|...+.+.-+-++.-..++++++|+ |+|.   +....+.+.++.. ++.|  +-.        -+|.+..
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt---~~~~~~~~~~~~~~r~vg--~Hf--------~~p~~~~  150 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST---LLPSQFAEATGRPEKFLA--LHF--------ANEIWKN  150 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc---CCHHHHHhhcCCcccEEE--EcC--------CCCCCcC
Confidence            9999999999654444443345556678899884 4433   3456677766532 3333  322        2345667


Q ss_pred             CceEEccCCCCCcHHHHHH
Q 019081          303 KNVLITPHVGGVTEHSYRS  321 (346)
Q Consensus       303 ~nviiTPH~a~~t~~~~~~  321 (346)
                      +.+.+.|+-.. ++++..+
T Consensus       151 ~lvevv~~~~t-~~~~~~~  168 (287)
T PRK08293        151 NTAEIMGHPGT-DPEVFDT  168 (287)
T ss_pred             CeEEEeCCCCC-CHHHHHH
Confidence            88899987553 4444443

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.48  E-value=8.7e-07  Score=82.68  Aligned_cols=100  Identities=19%  Similarity=0.313  Sum_probs=71.3

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC----EEEEE-cCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV----KIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (346)
                      +|||||+|+||.++++.|..-|+    +|+++ ||+..+..                 .+. ..+  ...+..+++++||
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~-----------------~~~-~~g~~~~~~~~e~~~~aD   63 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRD-----------------VFQ-SLGVKTAASNTEVVKSSD   63 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH-----------------HHH-HcCCEEeCChHHHHhcCC
Confidence            79999999999999999988887    89998 77643310                 011 111  2356778889999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      +|++++| ....+.++. +....++++.++|++.-|  +..+.+.+.+.
T Consensus        64 vVil~v~-~~~~~~vl~-~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~  108 (266)
T PLN02688         64 VIILAVK-PQVVKDVLT-ELRPLLSKDKLLVSVAAG--ITLADLQEWAG  108 (266)
T ss_pred             EEEEEEC-cHHHHHHHH-HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence            9999997 445555553 344567889999988655  46667766554

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.48  E-value=1.1e-07  Score=80.16  Aligned_cols=103  Identities=23%  Similarity=0.300  Sum_probs=72.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCccccccccccchhhhccccccccccc---cCCcCCHHHHhh
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE---KGCHEDIFEFAS  224 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ell~  224 (346)
                      .+++++++.|+|.|.+|+.++..|...|++ |++++|+..+...-..             .+...   .....++.+.+.
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~-------------~~~~~~~~~~~~~~~~~~~~   74 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAE-------------EFGGVNIEAIPLEDLEEALQ   74 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH-------------HHTGCSEEEEEGGGHCHHHH
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH-------------HcCccccceeeHHHHHHHHh
Confidence            478999999999999999999999999997 9999997654211000             01000   113456778899


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCc-EEEEcCCCCCCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNIARGGLLD  267 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~ga-ilIN~sRg~~vd  267 (346)
                      ++|+|+.+.|....   .+.++.++..++.. ++++.|...-|+
T Consensus        75 ~~DivI~aT~~~~~---~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   75 EADIVINATPSGMP---IITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             TESEEEE-SSTTST---SSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             hCCeEEEecCCCCc---ccCHHHHHHHHhhhhceeccccCCCCC
Confidence            99999999886544   88889887766544 888887654444

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.47  E-value=9.2e-07  Score=83.38  Aligned_cols=149  Identities=20%  Similarity=0.303  Sum_probs=87.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC-HHHHhhcCCEEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED-IFEFASKADVVVC  231 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~~  231 (346)
                      -++|+|+|+|.||+.+|+.++.-|+.|.++++...........  .        ....++  ...+ ..+.+..||+|++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~--~--------lgv~d~--~~~~~~~~~~~~aD~Viv   70 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL--E--------LGVIDE--LTVAGLAEAAAEADLVIV   70 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh--h--------cCcccc--cccchhhhhcccCCEEEE
Confidence            4689999999999999999999999875554433221000000  0        000110  0122 3577788999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCC---CCCCCCCCCceEEc
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD---PNDPILKFKNVLIT  308 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~---~~~pL~~~~nviiT  308 (346)
                      ++|- ..|..++. +....+|+|+++++++.-.---.+++.+.+..+.      .+...-|+-   ...+++..-.+++|
T Consensus        71 avPi-~~~~~~l~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vlt  142 (279)
T COG0287          71 AVPI-EATEEVLK-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLT  142 (279)
T ss_pred             eccH-HHHHHHHH-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEc
Confidence            9995 45555543 2233799999999997655433444444432211      222234541   23467777789999


Q ss_pred             cCCCCCcHHHHHHH
Q 019081          309 PHVGGVTEHSYRSM  322 (346)
Q Consensus       309 PH~a~~t~~~~~~~  322 (346)
                      |.-... .+...++
T Consensus       143 p~~~~~-~~~~~~~  155 (279)
T COG0287         143 PSEGTE-KEWVEEV  155 (279)
T ss_pred             CCCCCC-HHHHHHH
Confidence            974433 4444443

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.47  E-value=9.8e-07  Score=82.98  Aligned_cols=100  Identities=19%  Similarity=0.279  Sum_probs=65.7

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      +|+|||+|.||+.+|+.++..|.  +|++||++.........        .    ...+   ...+.+++. +||+|+++
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~--------~----g~~~---~~~~~~~~~-~aD~Vila   65 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE--------L----GLVD---EIVSFEELK-KCDVIFLA   65 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH--------C----CCCc---ccCCHHHHh-cCCEEEEe
Confidence            79999999999999999987774  79999986543110000        0    0000   123566655 59999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      +|.. .+..++ .+... +++++++++++.    ....+.+++..
T Consensus        66 vp~~-~~~~~~-~~l~~-l~~~~iv~d~gs----~k~~i~~~~~~  103 (275)
T PRK08507         66 IPVD-AIIEIL-PKLLD-IKENTTIIDLGS----TKAKIIESVPK  103 (275)
T ss_pred             CcHH-HHHHHH-HHHhc-cCCCCEEEECcc----chHHHHHHHHH
Confidence            9964 334444 34445 889999999744    24556666654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.46  E-value=4.4e-06  Score=84.66  Aligned_cols=197  Identities=14%  Similarity=0.121  Sum_probs=107.5

Q ss_pred             CcceEEEEeCCCCCHHHHhcC-CCCeEEEEcCccCCccchhHHhhCCcEEEecCCCC--CC-C----hhhHHHHHHHHHH
Q 019081           54 ANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--TG-N----AASCAELTIYLML  125 (346)
Q Consensus        54 ~~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~--~~-n----a~~vAE~~~~~~l  125 (346)
                      .++|+++--. +.+.+-++.+ ++--+|+...-..|.=-++.+.++||.+.-.-..-  +. .    =.++|+.+=    
T Consensus        63 ~~adiIlkV~-~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG----  137 (511)
T TIGR00561        63 WQSDIILKVN-APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG----  137 (511)
T ss_pred             hcCCEEEEeC-CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH----
Confidence            3578776433 3445456665 45555665555445444677888898876422110  00 0    012233222    


Q ss_pred             HHHHhHHHHHHHHH---hcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhh-
Q 019081          126 GLLRKQNEMRMAIE---QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV-  201 (346)
Q Consensus       126 ~~~R~~~~~~~~~~---~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~-  201 (346)
                        .|-.....+..-   .|.- ...| .+.+.++.|+|+|.+|...++.++.+|++|+++|++..+......  .+..+ 
T Consensus       138 --y~Avi~Aa~~lgr~~~g~~-taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~--lGa~~v  211 (511)
T TIGR00561       138 --YRAIIEAAHEFGRFFTGQI-TAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS--MGAEFL  211 (511)
T ss_pred             --HHHHHHHHHHhhhhcCCce-ecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--cCCeEE
Confidence              121111111110   1111 0112 455789999999999999999999999999999987643211100  00000 


Q ss_pred             ccccccccccc--cCCc----------CCHHHHhhcCCEEEEee--cCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          202 KNGIIDDLVDE--KGCH----------EDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       202 ~~~~~~~~~~~--~~~~----------~~l~ell~~aDiV~~~l--Plt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      .-+...+....  +...          .-+.+.++++|+|+.++  |.. ....++.++.++.||+|+++||+|-
T Consensus       212 ~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~-~aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       212 ELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGK-PAPKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             eccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCC-CCCeeehHHHHhhCCCCCEEEEeee
Confidence            00000000000  0000          11456678899998876  432 2346899999999999999999973

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.46  E-value=1.3e-06  Score=82.30  Aligned_cols=120  Identities=16%  Similarity=0.144  Sum_probs=74.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccc-ccc--hhhhccccccc-----cccccCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC-QSS--ALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~-~~~--~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (346)
                      ++|+|||+|.||..+|..+...|++|+++|++......... ...  ......+.+..     .........+++ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            58999999999999999999999999999987644210000 000  00000000000     000000124554 4789


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      ||+|+.++|...+.+.-+-++.-+.++++++|+....|  +....|.+.+.
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~  131 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATK  131 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhC
Confidence            99999999977665544445555678999988444333  66668888874

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.45  E-value=6.5e-07  Score=88.34  Aligned_cols=144  Identities=13%  Similarity=0.076  Sum_probs=88.6

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCC---cCCHHHHhhcCCEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGC---HEDIFEFASKADVVV  230 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~l~ell~~aDiV~  230 (346)
                      +|+|||+|.||..+|..++ .|++|++||++..+...-....  .+.....+.+... ....   ..+..+++++||+|+
T Consensus         2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~--~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vi   78 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRI--SPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVI   78 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCC--CCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEE
Confidence            6999999999999998776 4999999998765421100000  0000000001100 1111   134667789999999


Q ss_pred             EeecCCcc-ccCCCCH-------HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCC---C
Q 019081          231 CCLSLNKQ-TAGIVNK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDP---I  299 (346)
Q Consensus       231 ~~lPlt~~-T~~li~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~p---L  299 (346)
                      +++|...+ ..+.+|-       +.+..+++|.++|+.|.-.+-..+.+.+.+.+..+      +|.+|.+.+.+.   +
T Consensus        79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~  152 (388)
T PRK15057         79 IATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDN  152 (388)
T ss_pred             EeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccc
Confidence            99995422 1122221       22334799999999999999999999988765332      347887766544   4


Q ss_pred             CCCCceEE
Q 019081          300 LKFKNVLI  307 (346)
Q Consensus       300 ~~~~nvii  307 (346)
                      ...|.|++
T Consensus       153 ~~p~rvv~  160 (388)
T PRK15057        153 LHPSRIVI  160 (388)
T ss_pred             cCCCEEEE
Confidence            44455554

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.43  E-value=1.3e-06  Score=82.79  Aligned_cols=154  Identities=16%  Similarity=0.180  Sum_probs=88.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc---cchhhhccccccc-----cccccCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (346)
                      ++|+|||.|.||..+|..+...|++|++||++..........   .....++.+.+..     .........+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            589999999999999999999999999999875432110000   0000000000000     000001124554 4789


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHh-CCCeEEEEecCCCCCCCCCCCCCCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLEC-GHLGGLGIDVAWTEPFDPNDPILKFK  303 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EPl~~~~pL~~~~  303 (346)
                      ||+|+.++|...+.+..+-++....++++++|+ |+|.-.   ..++.+.+.. .++  .++-.|.  |.+ -.     +
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~~r~--~g~h~~~--p~~-~~-----~  150 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRPERF--IGIHFMN--PVP-VM-----K  150 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCcccE--EEeeccC--Ccc-cC-----c
Confidence            999999999776655444456667789999998 665544   3467776642 233  3455554  322 12     3


Q ss_pred             ceEEccCCCCCcHHHHHHH
Q 019081          304 NVLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       304 nviiTPH~a~~t~~~~~~~  322 (346)
                      -+-+.|+.++ +++..+++
T Consensus       151 ~vei~~g~~t-~~~~~~~~  168 (292)
T PRK07530        151 LVELIRGIAT-DEATFEAA  168 (292)
T ss_pred             eEEEeCCCCC-CHHHHHHH
Confidence            3456676443 44444443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.43  E-value=3.8e-07  Score=85.78  Aligned_cols=107  Identities=21%  Similarity=0.218  Sum_probs=75.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHcc--CCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRP--FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~--~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~  225 (346)
                      ...+|||||+|.||+.+++.+..  .|+++. ++|++..+..                 .....++   ...++++++++
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~-----------------~~a~~~g~~~~~~~~eell~~   67 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHA-----------------DFIWGLRRPPPVVPLDQLATH   67 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHH-----------------HHHHhcCCCcccCCHHHHhcC
Confidence            34789999999999999999875  588876 6777643310                 1111111   24689999999


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  280 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  280 (346)
                      +|+|++|+|...  ..-+   ....++.|.-++..+.|.+.+.++|.++.+++..
T Consensus        68 ~D~Vvi~tp~~~--h~e~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~  117 (271)
T PRK13302         68 ADIVVEAAPASV--LRAI---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGG  117 (271)
T ss_pred             CCEEEECCCcHH--HHHH---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCC
Confidence            999999998432  2111   2333566777777889988888999999888643

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.38  E-value=1.2e-06  Score=83.13  Aligned_cols=80  Identities=16%  Similarity=0.319  Sum_probs=66.1

Q ss_pred             ccccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||+|+||| .|.+|+.+|.+|..-|+.|++++.+.                              .+++++.++|
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT------------------------------~~l~e~~~~A  202 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRT------------------------------RDLPAVCRRA  202 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCC------------------------------CCHHHHHhcC
Confidence            3579999999999 99999999999999999999985211                              1567889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      |+|+++++...    ++.+..   +|+|+++||+|--.
T Consensus       203 DIVIsavg~~~----~v~~~~---lk~GavVIDvGin~  233 (296)
T PRK14188        203 DILVAAVGRPE----MVKGDW---IKPGATVIDVGINR  233 (296)
T ss_pred             CEEEEecCChh----hcchhe---ecCCCEEEEcCCcc
Confidence            99999998643    455544   89999999998544

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.38  E-value=9.9e-07  Score=85.02  Aligned_cols=115  Identities=22%  Similarity=0.169  Sum_probs=75.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      .+|+|||+|.||..+|..|...|++|.+|+|+......-... ......+ +  ...........++.++++.||+|+++
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~-g--~~~~~~~~~~~~~~e~~~~aD~Vi~~   81 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLP-G--VALPAELYPTADPEEALAGADFAVVA   81 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCC-C--CcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence            489999999999999999999999999999964321100000 0000000 0  00000011235788888999999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCC-CCCC--HHHHHHHHHh
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARG-GLLD--YEAIAHYLEC  277 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg-~~vd--~~aL~~aL~~  277 (346)
                      +|.. .+     ++.++.++++.++|+++.| ..-+  .+.+.+.+.+
T Consensus        82 v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         82 VPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             CchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            9965 22     5666889999999999997 4332  4566666654

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.38  E-value=5.5e-07  Score=84.51  Aligned_cols=103  Identities=27%  Similarity=0.432  Sum_probs=78.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc-----cCCcCCHHHHhh
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-----KGCHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~ell~  224 (346)
                      .....+|.|+|.|-+|..-|+.+.++|.+|...|.+..+...-              ++.+..     +.+...+++.+.
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~l--------------dd~f~~rv~~~~st~~~iee~v~  230 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQL--------------DDLFGGRVHTLYSTPSNIEEAVK  230 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhh--------------hHhhCceeEEEEcCHHHHHHHhh
Confidence            3667789999999999999999999999999999886542110              111111     114567899999


Q ss_pred             cCCEEEEe--ecCCccccCCCCHHHHccCCCCcEEEEcC--CCCCCC
Q 019081          225 KADVVVCC--LSLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLLD  267 (346)
Q Consensus       225 ~aDiV~~~--lPlt~~T~~li~~~~l~~mk~gailIN~s--Rg~~vd  267 (346)
                      ++|+|+..  +| -.....++.++.+++||||+++|+++  .|+++.
T Consensus       231 ~aDlvIgaVLIp-gakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~E  276 (371)
T COG0686         231 KADLVIGAVLIP-GAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFE  276 (371)
T ss_pred             hccEEEEEEEec-CCCCceehhHHHHHhcCCCcEEEEEEEcCCCcee
Confidence            99999765  45 35678899999999999999999996  455443

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.37  E-value=1.7e-06  Score=82.00  Aligned_cols=147  Identities=14%  Similarity=0.166  Sum_probs=87.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchh--hhcccccc-----ccccccCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGIID-----DLVDEKGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~--~~~~~~~~-----~~~~~~~~~~~l~ell~~  225 (346)
                      ++|||||.|.||..+|..+...|++|+.||+++......... ...+  .+..+.+.     ..........++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            489999999999999999999999999999986542110000 0000  00000000     000000023566 55899


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccC-CCCcEEEEcCCCCCCCHHHHHHHHHh-CCCeEEEEecCCCCCCCCCCCCCCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIARGGLLDYEAIAHYLEC-GHLGGLGIDVAWTEPFDPNDPILKFK  303 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~m-k~gailIN~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EPl~~~~pL~~~~  303 (346)
                      ||+|+-++|.+.+.+.-+-.+.-+.+ +++++|++.+.+-.  ..++..+++. .++  .++..|.+-|        -.+
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~--~~~la~~~~~~~r~--~g~hf~~P~~--------~~~  152 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP--IMKLAAATKRPGRV--LGLHFFNPVP--------VLP  152 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC--HHHHHhhcCCCccE--EEEecCCCcc--------cCc
Confidence            99999999998887776665444445 89999988766544  4444454432 233  4566665332        234


Q ss_pred             ceEEccCCCC
Q 019081          304 NVLITPHVGG  313 (346)
Q Consensus       304 nviiTPH~a~  313 (346)
                      -|-++||.+.
T Consensus       153 lvElv~~~~T  162 (286)
T PRK07819        153 LVELVPTLVT  162 (286)
T ss_pred             eEEEeCCCCC
Confidence            4556666443

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.36  E-value=2.8e-06  Score=80.54  Aligned_cols=134  Identities=16%  Similarity=0.141  Sum_probs=79.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccc----hhh--hcccccc-----ccccccCCcCCHHHH
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS----ALA--VKNGIID-----DLVDEKGCHEDIFEF  222 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~----~~~--~~~~~~~-----~~~~~~~~~~~l~el  222 (346)
                      ++|+|||+|.||..+|..+...|++|++||++............    .+.  +..+.+.     ..........++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            58999999999999999999999999999987643211000000    000  0000000     000000112345 56


Q ss_pred             hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC
Q 019081          223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE  291 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  291 (346)
                      +++||+|+.++|...+.+.-+-++.-+.++++++|+++..|  +...++.+.+... -.-.++..|.+-
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~~P~  148 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWFNPA  148 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecCCCc
Confidence            79999999999976543433334444557899999877666  4667777777532 222345555433

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.36  E-value=1.8e-06  Score=91.96  Aligned_cols=139  Identities=20%  Similarity=0.227  Sum_probs=87.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|||+|.||.++++.++..|  .+|+++|++..+.....             ..... .....++++++++||+|++
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-------------~~g~~-~~~~~~~~~~~~~aDvVil   69 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-------------SLGVI-DRGEEDLAEAVSGADVIVL   69 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-------------HCCCC-CcccCCHHHHhcCCCEEEE
Confidence            68999999999999999999888  58999998754311000             00000 0023467888999999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCC---------CCCCCCCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD---------PNDPILKF  302 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~---------~~~pL~~~  302 (346)
                      ++|.. .+..++. +.-..++++.++++++.-.....+.+.+.+....     ..+...-|..         .+..|+.-
T Consensus        70 avp~~-~~~~vl~-~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~-----~r~~~~hPm~G~~~~g~~~a~~~l~~~  142 (735)
T PRK14806         70 AVPVL-AMEKVLA-DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP-----AGFVPGHPIAGSEKSGVHAANADLFRN  142 (735)
T ss_pred             CCCHH-HHHHHHH-HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC-----CeEEecCCcCcCCcchhhhhhhHHhCC
Confidence            99953 3433332 2334568899999998654333444544443311     2233333421         22356677


Q ss_pred             CceEEccCCCC
Q 019081          303 KNVLITPHVGG  313 (346)
Q Consensus       303 ~nviiTPH~a~  313 (346)
                      .+++++|+...
T Consensus       143 ~~~~~~~~~~~  153 (735)
T PRK14806        143 HKVILTPLAET  153 (735)
T ss_pred             CeEEEECCCCC
Confidence            78899997554

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.33  E-value=1.9e-06  Score=81.28  Aligned_cols=80  Identities=21%  Similarity=0.412  Sum_probs=67.8

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||.|. +|+.+|..|...|+.|+.++++.                              .++.+.+++|
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~~~A  202 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYLKDA  202 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHHhhC
Confidence            4579999999999999 99999999999999999887531                              2577889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      |+|+++++.    .++|.++.   +|+|+++||+|--.
T Consensus       203 DIVIsAvg~----p~~i~~~~---vk~gavVIDvGi~~  233 (286)
T PRK14175        203 DVIVSAVGK----PGLVTKDV---VKEGAVIIDVGNTP  233 (286)
T ss_pred             CEEEECCCC----CcccCHHH---cCCCcEEEEcCCCc
Confidence            999999975    34788875   68999999998654

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.33  E-value=2.8e-06  Score=86.56  Aligned_cols=120  Identities=14%  Similarity=0.081  Sum_probs=74.7

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc----cchhhhccccccccccc--cCCcCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ----SSALAVKNGIIDDLVDE--KGCHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aD  227 (346)
                      ++|||||+|.||..+|..+...|++|++||++..........    ...+....+  ......  .....++.+++++||
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~g~i~~~~~~~ea~~~aD   82 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTD--APLPPEGRLTFCASLAEAVAGAD   82 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhcc--chhhhhhceEeeCCHHHHhcCCC
Confidence            489999999999999999999999999999976542110000    000000000  000000  012357889999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      +|+.++|...+.+..+-++.-+.++++++ |.++..++ ....+.+.+..
T Consensus        83 ~Vieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~  130 (495)
T PRK07531         83 WIQESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTH  130 (495)
T ss_pred             EEEEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCC
Confidence            99999998766555443444455777765 55555554 35577776644

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.32  E-value=2.9e-06  Score=82.22  Aligned_cols=160  Identities=21%  Similarity=0.274  Sum_probs=101.7

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccc----cccccC-C-cCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD----LVDEKG-C-HEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~-~~~l~ell~~aD  227 (346)
                      .++||||+|.||..+|-.+...|++|+|+|.+...-..-....  .+..+-..+.    .+.... . ..+.++ ++.||
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~--~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d   86 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGE--SYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD   86 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCc--ceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence            6999999999999999999999999999998764321100000  0000000011    111111 1 234444 55999


Q ss_pred             EEEEeecCCccccC-C------CC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC--CCeEEEEecC---CCCCC
Q 019081          228 VVVCCLSLNKQTAG-I------VN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG--HLGGLGIDVA---WTEPF  293 (346)
Q Consensus       228 iV~~~lPlt~~T~~-l------i~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g--~i~ga~lDV~---~~EPl  293 (346)
                      ++++|+| ||-+.+ -      .+  +..-..||+|.++|=-|.-..-.++.++.-|.+.  .+ ..+-|+|   .+|-.
T Consensus        87 v~iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv  164 (436)
T COG0677          87 VFIICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERV  164 (436)
T ss_pred             EEEEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCcccc
Confidence            9999999 555442 1      11  2234568999999999999999999999987764  23 2345754   67766


Q ss_pred             CCCCCCCCCCceEEcc-CCCCCcHHHHHH
Q 019081          294 DPNDPILKFKNVLITP-HVGGVTEHSYRS  321 (346)
Q Consensus       294 ~~~~pL~~~~nviiTP-H~a~~t~~~~~~  321 (346)
                      .|.+.+..+-|   .| -+||.|+.+.+.
T Consensus       165 ~PG~~~~el~~---~~kVIgG~tp~~~e~  190 (436)
T COG0677         165 LPGNVLKELVN---NPKVIGGVTPKCAEL  190 (436)
T ss_pred             CCCchhhhhhc---CCceeecCCHHHHHH
Confidence            66776665433   33 257778776544

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.31  E-value=7.3e-07  Score=83.90  Aligned_cols=102  Identities=18%  Similarity=0.335  Sum_probs=72.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC----EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (346)
                      +++||||+|+||.++++.+..-|+    +|+++||+..+..                 .+.+..+  ...+..+++.+||
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~-----------------~l~~~~g~~~~~~~~e~~~~aD   65 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLK-----------------NASDKYGITITTNNNEVANSAD   65 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHH-----------------HHHHhcCcEEeCCcHHHHhhCC
Confidence            479999999999999999987664    6999998654311                 1111111  2346778899999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      +|++++|. .....++ .+.-..++++.++|.+.=|  ++.+.|-+.|.
T Consensus        66 iIiLavkP-~~~~~vl-~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         66 ILILSIKP-DLYSSVI-NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             EEEEEeCh-HHHHHHH-HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence            99999994 5555555 2333446788999999776  56666666664

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.30  E-value=4.5e-06  Score=79.74  Aligned_cols=126  Identities=14%  Similarity=0.180  Sum_probs=71.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc---cchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      ++|+|||+|.||..+|..+...|++|+++|++..........   ..+...+.+.............++++++++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            589999999999999999999999999999865432110000   00000000000000000011346778899999999


Q ss_pred             EeecCCcc-ccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh-CCCeE
Q 019081          231 CCLSLNKQ-TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC-GHLGG  282 (346)
Q Consensus       231 ~~lPlt~~-T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~-g~i~g  282 (346)
                      +++|...+ ...++ .+.-..++++++++...-|  +....+.+.+.. .++.|
T Consensus        85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig  135 (311)
T PRK06130         85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVTRPERFVG  135 (311)
T ss_pred             EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEE
Confidence            99996543 23333 2222335677766533333  345677777653 34444

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.27  E-value=7e-07  Score=80.96  Aligned_cols=130  Identities=12%  Similarity=0.138  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHH--HccCCCEEEE-EcCCCccccccc
Q 019081          117 AELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR--LRPFGVKIIA-TKRSWASHSQVS  193 (346)
Q Consensus       117 AE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~--l~~~G~~V~~-~d~~~~~~~~~~  193 (346)
                      ++|.+..++...|++..         |      . ..++++|||+|.+|+.+++.  ....|+++++ +|+++.+.....
T Consensus        64 ~gy~v~~l~~~~~~~l~---------~------~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i  127 (213)
T PRK05472         64 VGYNVEELLEFIEKILG---------L------D-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI  127 (213)
T ss_pred             CCeeHHHHHHHHHHHhC---------C------C-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe
Confidence            45667777777777642         1      1 34589999999999999986  3467899876 565432210000


Q ss_pred             cccchhhhccccccccccccCCcCCHHHHhhc--CCEEEEeecCCcc---ccCCCCHHHHccCCCCcEEEEcCCCCCCCH
Q 019081          194 CQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQ---TAGIVNKSFLSSMKKGSLLVNIARGGLLDY  268 (346)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~~~lPlt~~---T~~li~~~~l~~mk~gailIN~sRg~~vd~  268 (346)
                                    .... .....++.+++++  .|+|++++|....   +..+.......-|...++.+|+.+|-+|+.
T Consensus       128 --------------~g~~-v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~  192 (213)
T PRK05472        128 --------------GGIP-VYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRN  192 (213)
T ss_pred             --------------CCeE-EcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEE
Confidence                          0000 0123567888755  9999999997654   223333333445677789999999999999


Q ss_pred             HHHHHHHHh
Q 019081          269 EAIAHYLEC  277 (346)
Q Consensus       269 ~aL~~aL~~  277 (346)
                      ++|..+|..
T Consensus       193 ~~l~~~l~~  201 (213)
T PRK05472        193 VDLTVELQT  201 (213)
T ss_pred             echHHHHHH
Confidence            999999873

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.25  E-value=1.7e-06  Score=81.56  Aligned_cols=106  Identities=18%  Similarity=0.269  Sum_probs=72.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  225 (346)
                      .+.+|||||+|+||.++++.+...|    .+|+++||+..+...                .+...++  ...+..+++.+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~----------------~l~~~~g~~~~~~~~e~~~~   65 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQ----------------ELHQKYGVKGTHNKKELLTD   65 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHH----------------HHHHhcCceEeCCHHHHHhc
Confidence            3468999999999999999998777    689999986432100                1111111  23467788899


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      ||+|++++|.. ....++ .+....++++.++|++.-|  +..+.+.+.+..
T Consensus        66 aDvVilav~p~-~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~  113 (279)
T PRK07679         66 ANILFLAMKPK-DVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK  113 (279)
T ss_pred             CCEEEEEeCHH-HHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            99999999953 444444 3334456789999998644  356666666643

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.25  E-value=2.8e-06  Score=79.94  Aligned_cols=123  Identities=25%  Similarity=0.359  Sum_probs=86.0

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||+++|||. |.+|+.+|.+|...|+.|+++...                              ..++.+..++|
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~------------------------------t~~l~~~~~~A  202 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR------------------------------TRNLAEVARKA  202 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC------------------------------CCCHHHHHhhC
Confidence            46899999999999 999999999999999999997321                              12678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+++++...    ++....   +|+|+++||+|--.+.          +|++.|   ||-..+-        .----.
T Consensus       203 DIVI~avg~~~----~v~~~~---ik~GavVIDvgin~~~----------~gkl~G---DVdf~~v--------~~~a~~  254 (284)
T PRK14179        203 DILVVAIGRGH----FVTKEF---VKEGAVVIDVGMNRDE----------NGKLIG---DVDFDEV--------AEVASY  254 (284)
T ss_pred             CEEEEecCccc----cCCHHH---ccCCcEEEEecceecC----------CCCeec---CccHHHH--------HhhccE
Confidence            99999998543    566655   7999999999854432          356654   5532221        011135


Q ss_pred             EccCCCCCcHHHHHHHHHHHHH
Q 019081          307 ITPHVGGVTEHSYRSMAKVVGD  328 (346)
Q Consensus       307 iTPH~a~~t~~~~~~~~~~~~~  328 (346)
                      +||-=||.-+-+..-+.+...+
T Consensus       255 iTPVPGGVGp~T~a~L~~N~~~  276 (284)
T PRK14179        255 ITPVPGGVGPMTITMLMEQTYQ  276 (284)
T ss_pred             ecCCCCCchHHHHHHHHHHHHH
Confidence            8998777655444333333333

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.24  E-value=1.2e-06  Score=76.35  Aligned_cols=112  Identities=24%  Similarity=0.367  Sum_probs=69.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccc----cc-----c-cC-CcC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL----VD-----E-KG-CHE  217 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~-~~-~~~  217 (346)
                      ..+...+|.|+|.|++|+..++.++++|++|+.+|.+.......... ....+....-...    ++     + .. ...
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESL-GAYFIEVDYEDHLERKDFDKADYYEHPESYES   94 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT-TTEESEETTTTTTTSB-CCHHHCHHHCCHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcc-cCceEEEcccccccccccchhhhhHHHHHhHH
Confidence            45677899999999999999999999999999999865321110000 0000000000000    00     0 00 123


Q ss_pred             CHHHHhhcCCEEEE-eecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          218 DIFEFASKADVVVC-CLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       218 ~l~ell~~aDiV~~-~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      .|.+.++.+|+|++ ++-.......++.++.++.||+|++++++|
T Consensus        95 ~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   95 NFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            57888999999986 343466788899999999999999999996

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.23  E-value=1e-05  Score=77.34  Aligned_cols=155  Identities=15%  Similarity=0.100  Sum_probs=83.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchh--hhcccccc-----ccccccCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGIID-----DLVDEKGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~--~~~~~~~~-----~~~~~~~~~~~l~ell~~  225 (346)
                      ++|+|||+|.||..+|..+...|++|++||++.......... ...+  -+..+.+.     ..........++.+++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            479999999999999999999999999999975421110000 0000  00000000     000000123578888999


Q ss_pred             CCEEEEeecCCccccCCCCHHHHcc-CCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCc
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  304 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  304 (346)
                      ||+|+.++|...+....+-.+ ++. .+++.++. .+... .....+.+.+.....  ...|-+-+ |      -+-.+=
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~-ssts~-~~~~~la~~~~~~~~--~~~~hp~~-p------~~~~~l  150 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAE-LDALAPPHAILA-SSTSA-LLASAFTEHLAGRER--CLVAHPIN-P------PYLIPV  150 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEE-EeCCC-CCHHHHHHhcCCccc--EEEEecCC-C------cccCce
Confidence            999999999764433332222 344 44455444 33333 346677777754321  23343322 1      111234


Q ss_pred             eEEccCCCCCcHHHHHH
Q 019081          305 VLITPHVGGVTEHSYRS  321 (346)
Q Consensus       305 viiTPH~a~~t~~~~~~  321 (346)
                      +.++||-++ +++..++
T Consensus       151 veiv~~~~t-~~~~~~~  166 (308)
T PRK06129        151 VEVVPAPWT-APATLAR  166 (308)
T ss_pred             EEEeCCCCC-CHHHHHH
Confidence            678887554 3444443

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.22  E-value=4.4e-06  Score=79.34  Aligned_cols=97  Identities=15%  Similarity=0.133  Sum_probs=69.8

Q ss_pred             HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCccccCCC
Q 019081          165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIV  243 (346)
Q Consensus       165 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T~~li  243 (346)
                      |+.+|++|..-|++|++||++.........            ..+.+... ...+..+++++||+|++++|..+.++.++
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~------------e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl   99 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLW------------KKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA   99 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhh------------HHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH
Confidence            899999999899999999986542100000            01111111 34578899999999999999887788887


Q ss_pred             CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       244 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                       ...+..+++|+++||+|..   +.+.++..|+.
T Consensus       100 -~GLaa~L~~GaIVID~STI---sP~t~~~~~e~  129 (341)
T TIGR01724       100 -RTIIEHVPENAVICNTCTV---SPVVLYYSLEK  129 (341)
T ss_pred             -HHHHhcCCCCCEEEECCCC---CHHHHHHHHHH
Confidence             5588899999999999764   45556655555

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.18  E-value=1.8e-06  Score=82.61  Aligned_cols=107  Identities=14%  Similarity=0.200  Sum_probs=68.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccC-CcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKG-CHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|||+|.||..+|..|...|++|.+|+++..........  .....  ..... ..... ...+.+++++.||+|++
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~vi~   77 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINAD--RENPR--YLPGIKLPDNLRATTDLAEALADADLILV   77 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc--Ccccc--cCCCCcCCCCeEEeCCHHHHHhCCCEEEE
Confidence            379999999999999999999999999999864321100000  00000  00000 00001 23577888999999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL  266 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~v  266 (346)
                      ++|. ..++.++. +....++++.++|+++.|--.
T Consensus        78 ~v~~-~~~~~v~~-~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         78 AVPS-QALREVLK-QLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             eCCH-HHHHHHHH-HHHhhcCCCCEEEEEeecccC
Confidence            9995 45555553 344556889999999765433

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.17  E-value=8.5e-06  Score=83.19  Aligned_cols=134  Identities=16%  Similarity=0.208  Sum_probs=85.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchh--hhcccccc-----ccccccCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGIID-----DLVDEKGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~--~~~~~~~~-----~~~~~~~~~~~l~ell~~  225 (346)
                      ++|||||+|.||..+|..+...|++|+.||++.......... ...+  .+..+.+.     ..........++++ +++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            589999999999999999998899999999976542110000 0000  00000000     00000012356655 569


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEE-EEcCCCCCCCHHHHHHHHHh-CCCeEEEEecCCCCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLEC-GHLGGLGIDVAWTEPF  293 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EPl  293 (346)
                      ||+|+-++|...+.+..+-.+.-+.++++++| +|+|.-++   .++..+++. .++  .++..|.+-|.
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~v  151 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVPL  151 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCccc
Confidence            99999999998888777666555557899999 59987766   356666653 333  46777765443

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.17  E-value=4e-06  Score=85.41  Aligned_cols=136  Identities=15%  Similarity=0.128  Sum_probs=85.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccc---ccchhhhcccccc-----ccccccCCcCCHHHHhh
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIID-----DLVDEKGCHEDIFEFAS  224 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~l~ell~  224 (346)
                      =++|||||+|.||..+|..+...|++|+.||++.........   ......+..+.+.     ..........++++ ++
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~   83 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA   83 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence            358999999999999999999999999999997654211000   0000000000000     00000012356755 57


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF  293 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl  293 (346)
                      +||+|+-++|...+.+..+-.+.-+.++++++|. |||.-++   ..+.++++. ...-.++..|.+-|.
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv  149 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV  149 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence            9999999999888877766666556688888876 7766554   466777643 334567788776554

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.16  E-value=1.6e-06  Score=77.03  Aligned_cols=151  Identities=21%  Similarity=0.241  Sum_probs=80.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccccc---C---CcCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---G---CHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~l~ell~~aD  227 (346)
                      ++|+|+|+|.+|..+|..++..|++|++||.+...-..-..  ...+..+..++++..+.   +   ...+.++.+++||
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~--g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad   78 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNN--GELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD   78 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHT--TSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhh--ccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence            48999999999999999999999999999987642111000  00011111111221111   1   2357788899999


Q ss_pred             EEEEeecCCcc-ccCCCC--------HHHHccCCCCcEEEEcCCCCCCCHHHHHH-HHHhCCCeEEEEe-cCCCCCCCCC
Q 019081          228 VVVCCLSLNKQ-TAGIVN--------KSFLSSMKKGSLLVNIARGGLLDYEAIAH-YLECGHLGGLGID-VAWTEPFDPN  296 (346)
Q Consensus       228 iV~~~lPlt~~-T~~li~--------~~~l~~mk~gailIN~sRg~~vd~~aL~~-aL~~g~i~ga~lD-V~~~EPl~~~  296 (346)
                      ++++|+| ||. ..+-.|        +.....++++.++|.-|.-.+=..+.++. .|++..-.+.-++ +|.+|=+.+.
T Consensus        79 v~~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G  157 (185)
T PF03721_consen   79 VVFICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG  157 (185)
T ss_dssp             EEEE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred             eEEEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence            9999999 443 233322        23455678999999999999988885554 4443322111111 3566755555


Q ss_pred             C---CCCCCCceEE
Q 019081          297 D---PILKFKNVLI  307 (346)
Q Consensus       297 ~---pL~~~~nvii  307 (346)
                      +   .+...|.|++
T Consensus       158 ~a~~d~~~~~rvV~  171 (185)
T PF03721_consen  158 RAIEDFRNPPRVVG  171 (185)
T ss_dssp             SHHHHHHSSSEEEE
T ss_pred             CcchhccCCCEEEE
Confidence            4   3445667764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.16  E-value=4.2e-06  Score=75.97  Aligned_cols=115  Identities=17%  Similarity=0.260  Sum_probs=90.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHH---hhcCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF---ASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el---l~~aDiV  229 (346)
                      +++|.||+|++|..+++++..-|.+|++||+++....                 ++..... ...+++++   |...-+|
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~-----------------~~~~~ga~~a~sl~el~~~L~~pr~v   63 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVE-----------------ELKDEGATGAASLDELVAKLSAPRIV   63 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHH-----------------HHHhcCCccccCHHHHHHhcCCCcEE
Confidence            3789999999999999999999999999999875421                 1111111 23456665   4567899


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA  288 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~  288 (346)
                      -+++|....|..+|+ +.-..|.+|-++|+-+-..--|.....+.|.+..|.  .|||-
T Consensus        64 WlMvPag~it~~vi~-~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G  119 (300)
T COG1023          64 WLMVPAGDITDAVID-DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG  119 (300)
T ss_pred             EEEccCCCchHHHHH-HHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence            999999877777764 344568899999999998888998999999999985  68885

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.15  E-value=1.9e-05  Score=80.32  Aligned_cols=197  Identities=14%  Similarity=0.139  Sum_probs=105.7

Q ss_pred             cceEEEEeCCCCCHHHHhcCC-CCeEEEEcCccCCccchhHHhhCCcEEEecCCCC--C-CCh----hhHHHHHHHHHHH
Q 019081           55 NYHLCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-GNA----ASCAELTIYLMLG  126 (346)
Q Consensus        55 ~~d~~i~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~--~-~na----~~vAE~~~~~~l~  126 (346)
                      ++|+++.-.. .+.+-++.++ +--+|+......+.=-++.+.++||.+.-.--.-  + +..    .+.|+.+=     
T Consensus        65 ~~diilkV~~-P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG-----  138 (509)
T PRK09424         65 QSDIILKVNA-PSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG-----  138 (509)
T ss_pred             cCCEEEEeCC-CCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH-----
Confidence            5888774333 3444466654 4556666555555545677888898876421110  0 000    12222221     


Q ss_pred             HHHhHHHHHHHHHhcccCCCC---ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhh---
Q 019081          127 LLRKQNEMRMAIEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA---  200 (346)
Q Consensus       127 ~~R~~~~~~~~~~~~~~~~~~---~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~---  200 (346)
                       +|-+....+..  ++.-...   .....+.+|.|+|.|.+|...++.++.+|++|+++|++..+......  .+-.   
T Consensus       139 -y~Av~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes--lGA~~v~  213 (509)
T PRK09424        139 -YRAVIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES--MGAEFLE  213 (509)
T ss_pred             -HHHHHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--cCCeEEE
Confidence             22221111111  1111100   12456999999999999999999999999999999987654221110  0000   


Q ss_pred             hccccccccccccC--CcCC--------HHHHhhcCCEEEEeecCCc-cccCCCCHHHHccCCCCcEEEEcCC
Q 019081          201 VKNGIIDDLVDEKG--CHED--------IFEFASKADVVVCCLSLNK-QTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       201 ~~~~~~~~~~~~~~--~~~~--------l~ell~~aDiV~~~lPlt~-~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      +....-......+.  ...+        +.+.+..+|+|+.+..... ....++.++.++.||+|+++|++|=
T Consensus       214 i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        214 LDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             eccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            00000000000000  0011        1222357999999875322 1345668999999999999999973

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.14  E-value=3e-06  Score=84.45  Aligned_cols=102  Identities=26%  Similarity=0.397  Sum_probs=70.7

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      .+.|++++|+|+|.||+.+++.|+..| .+|++++|+..+.....             ...........++.+.+..+|+
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la-------------~~~g~~~i~~~~l~~~l~~aDv  243 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLA-------------KELGGEAVKFEDLEEYLAEADI  243 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-------------HHcCCeEeeHHHHHHHHhhCCE
Confidence            478999999999999999999999999 68999998764311000             0000000123467788899999


Q ss_pred             EEEeecCCccccCCCCHHHHccCC----CCcEEEEcCCCCCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMK----KGSLLVNIARGGLLD  267 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk----~gailIN~sRg~~vd  267 (346)
                      |+.+++   .+..+++++.++.+.    ...++|+.+...=||
T Consensus       244 Vi~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       244 VISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             EEECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            999965   455688888887652    235788887544333

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.13  E-value=2.8e-05  Score=65.94  Aligned_cols=80  Identities=24%  Similarity=0.290  Sum_probs=67.1

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|+|-+. +|+.+|..|...|+.|...+++.                              .++++..++|
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------------------------~~l~~~v~~A   72 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------------------------IQLQSKVHDA   72 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------------------------cCHHHHHhhC
Confidence            5689999999999876 58999999999999999887421                              2677889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      |+|+++++..    ++|+.+.   +|+|+++|+++...
T Consensus        73 DIVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          73 DVVVVGSPKP----EKVPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             CEEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence            9999998754    5788877   68999999998655

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.12  E-value=8e-07  Score=74.04  Aligned_cols=91  Identities=23%  Similarity=0.310  Sum_probs=53.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEE-cCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  228 (346)
                      ...+|||||.|++|..+++.|...|++|.++ .|+..+..                 .......  ...+++++++++|+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~-----------------~a~~~~~~~~~~~~~~~~~~aDl   71 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAE-----------------RAAAFIGAGAILDLEEILRDADL   71 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHH-----------------HHHC--TT-----TTGGGCC-SE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccc-----------------ccccccccccccccccccccCCE
Confidence            3458999999999999999999999999876 44332210                 1111111  34578899999999


Q ss_pred             EEEeecCCccccCCCCHHHHcc--CCCCcEEEEcC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSS--MKKGSLLVNIA  261 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~--mk~gailIN~s  261 (346)
                      +++++|.. ....+ -++.-..  .++|.+++-||
T Consensus        72 v~iavpDd-aI~~v-a~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   72 VFIAVPDD-AIAEV-AEQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             EEE-S-CC-HHHHH-HHHHHCC--S-TT-EEEES-
T ss_pred             EEEEechH-HHHHH-HHHHHHhccCCCCcEEEECC
Confidence            99999964 32222 2222222  57999999995

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.12  E-value=1.4e-05  Score=70.88  Aligned_cols=96  Identities=25%  Similarity=0.340  Sum_probs=67.9

Q ss_pred             CCccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC----cCCHH
Q 019081          146 PTGETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC----HEDIF  220 (346)
Q Consensus       146 ~~~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~  220 (346)
                      +.+.++.||++.|||-+.+ |+.+|..|..-|+.|+.+|.+........          .   ..-.+.-.    ..++.
T Consensus        55 ~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~----------~---~~~hs~t~~~~~~~~l~  121 (197)
T cd01079          55 PYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRG----------E---SIRHEKHHVTDEEAMTL  121 (197)
T ss_pred             ccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccc----------c---ccccccccccchhhHHH
Confidence            3467899999999999975 99999999999999999975332110000          0   00000000    11278


Q ss_pred             HHhhcCCEEEEeecCCccccCC-CCHHHHccCCCCcEEEEcC
Q 019081          221 EFASKADVVVCCLSLNKQTAGI-VNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       221 ell~~aDiV~~~lPlt~~T~~l-i~~~~l~~mk~gailIN~s  261 (346)
                      +.+++||||+++++..    ++ +..+.+   |+|+++||+|
T Consensus       122 ~~~~~ADIVIsAvG~~----~~~i~~d~i---k~GavVIDVG  156 (197)
T cd01079         122 DCLSQSDVVITGVPSP----NYKVPTELL---KDGAICINFA  156 (197)
T ss_pred             HHhhhCCEEEEccCCC----CCccCHHHc---CCCcEEEEcC
Confidence            8999999999999843    45 788774   8999999997

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=1.2e-05  Score=75.95  Aligned_cols=80  Identities=19%  Similarity=0.349  Sum_probs=66.3

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|+|.|. +|+++|..|...|+.|+.+++..                              .++.+.+++|
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------------------------~~L~~~~~~a  203 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------------------------QNLPELVKQA  203 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------------------------hhHHHHhccC
Confidence            4689999999999998 99999999999999999987621                              2567778999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      |+|+.+++ .+   ++++.+.   +|+|+++||++-..
T Consensus       204 DIvI~AtG-~~---~~v~~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        204 DIIVGAVG-KP---ELIKKDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             CEEEEccC-CC---CcCCHHH---cCCCCEEEEEEEee
Confidence            99999996 22   3677765   69999999997544

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=9.3e-06  Score=76.24  Aligned_cols=80  Identities=16%  Similarity=0.303  Sum_probs=68.1

Q ss_pred             ccccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.|+++.|+|.+ .+|+.+|..+..+|+.|....++.                              .++.+.+++|
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------------------------~~L~~~~~~A  196 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------------------------ENLKAELRQA  196 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------------------------hHHHHHHhhC
Confidence            468999999999999 899999999999999998876421                              2678899999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      |+|+.+++..    +++.++.+   |+|+++||+|-..
T Consensus       197 DIvI~Avgk~----~lv~~~~v---k~GavVIDVgi~~  227 (279)
T PRK14178        197 DILVSAAGKA----GFITPDMV---KPGATVIDVGINQ  227 (279)
T ss_pred             CEEEECCCcc----cccCHHHc---CCCcEEEEeeccc
Confidence            9999999632    68898885   9999999998554

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.10  E-value=4.4e-06  Score=77.81  Aligned_cols=101  Identities=16%  Similarity=0.238  Sum_probs=70.4

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCE---EEEEcCCCccccccccccchhhhcccccccccccc--C-CcCCHHHHhhcCCE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVK---IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--G-CHEDIFEFASKADV  228 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~---V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~ell~~aDi  228 (346)
                      +|||||+|+||+++++.+...|.+   +.+++|+..+..                 .+....  . ...+..+++++||+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~aDv   64 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAA-----------------RLAERFPKVRIAKDNQAVVDRSDV   64 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHH-----------------HHHHHcCCceEeCCHHHHHHhCCE
Confidence            699999999999999999877753   577887643310                 111111  1 23578888999999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      |++++|. .....++..  + .+++|.++|.++  .-+..+.|.+.+..+
T Consensus        65 Vilav~p-~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         65 VFLAVRP-QIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             EEEEeCH-HHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            9999993 444444432  3 257899999987  447888888887653

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.09  E-value=1.3e-05  Score=69.33  Aligned_cols=81  Identities=23%  Similarity=0.434  Sum_probs=58.4

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.++..|...|+.|+..+.+.                              .++++.+++|
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------------------------~~l~~~~~~A   80 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------------------------KNLQEITRRA   80 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------------------------SSHHHHHTTS
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------------------------Ccccceeeec
Confidence            4579999999999996 89999999999999999876421                              3678899999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      |+|+.+++-    .++|..+.   +|+|+++||++.-..
T Consensus        81 DIVVsa~G~----~~~i~~~~---ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   81 DIVVSAVGK----PNLIKADW---IKPGAVVIDVGINYV  112 (160)
T ss_dssp             SEEEE-SSS----TT-B-GGG---S-TTEEEEE--CEEE
T ss_pred             cEEeeeecc----cccccccc---ccCCcEEEecCCccc
Confidence            999999863    45777765   599999999976554

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK07680 late competence protein ComER; Validated

Probab=98.07  E-value=6.2e-06  Score=77.44  Aligned_cols=101  Identities=19%  Similarity=0.324  Sum_probs=69.7

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC----EEEEEcCCCccccccccccchhhhcccccccccccc-C--CcCCHHHHhhcCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKAD  227 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~aD  227 (346)
                      ++||||+|.||+.+++.+...|.    +|.+++|+..+..                 .+.... +  ...+..+++.+||
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~aD   64 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAY-----------------HIKERYPGIHVAKTIEEVISQSD   64 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHH-----------------HHHHHcCCeEEECCHHHHHHhCC
Confidence            69999999999999999887773    7999998754310                 011111 1  2357778889999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      +|++++|. .....++ ++....++++.++|.++-|  +..+.|-+.+.
T Consensus        65 iVilav~p-~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         65 LIFICVKP-LDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             EEEEecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            99999983 3344444 2333457788999999844  36667766554

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.06  E-value=7.1e-05  Score=68.54  Aligned_cols=160  Identities=19%  Similarity=0.232  Sum_probs=101.7

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCE---EEEEcCCC----ccccccccccchhhhcccccccccccc---CCcC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVK---IIATKRSW----ASHSQVSCQSSALAVKNGIIDDLVDEK---GCHE  217 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~---V~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  217 (346)
                      +..+.++++.|+|.|.+|+.+|+.|...|++   |+.+||+.    .+... .   ..+.      ..+....   ....
T Consensus        20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~-L---~~~~------~~la~~~~~~~~~~   89 (226)
T cd05311          20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDD-L---NPDK------NEIAKETNPEKTGG   89 (226)
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchh-h---hHHH------HHHHHHhccCcccC
Confidence            3568899999999999999999999999985   99999973    21100 0   0000      0011111   1113


Q ss_pred             CHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC-CeEEEEecCCCCCCCCC
Q 019081          218 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH-LGGLGIDVAWTEPFDPN  296 (346)
Q Consensus       218 ~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~-i~ga~lDV~~~EPl~~~  296 (346)
                      ++.+.++++|+|+.+.|     .++++.+.++.|+++.++...+..  ..|.-+.+|.+.|. |..-|.     +.+   
T Consensus        90 ~l~~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~~---  154 (226)
T cd05311          90 TLKEALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SDF---  154 (226)
T ss_pred             CHHHHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CCC---
Confidence            67788889999999876     478899999999999999988833  34544444555443 333331     221   


Q ss_pred             CCCCCCCceEEccCCCCC-----cHHHHHHHHHHHHHHHHHHH
Q 019081          297 DPILKFKNVLITPHVGGV-----TEHSYRSMAKVVGDVALQLH  334 (346)
Q Consensus       297 ~pL~~~~nviiTPH~a~~-----t~~~~~~~~~~~~~ni~~~~  334 (346)
                        .....|+++-|=++-.     .....+.|...+++.+-.+.
T Consensus       155 --~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~  195 (226)
T cd05311         155 --PNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLA  195 (226)
T ss_pred             --ccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhC
Confidence              2467899999977632     11222445555555555443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=1.6e-05  Score=74.83  Aligned_cols=122  Identities=27%  Similarity=0.372  Sum_probs=85.6

Q ss_pred             ccccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||+|.|||-| .+|+.+|..|...|+.|+++....                              .++.+.+++|
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------------------------~~l~~~~~~A  201 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------------------------KDLSFYTQNA  201 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------------------------HHHHHHHHhC
Confidence            468999999999999 999999999999999999874311                              2577889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+++++.    .+++..+++   |+|+++||++--.+          .+|++.|   ||-..+       .. .---.
T Consensus       202 DIvV~AvG~----p~~i~~~~v---k~GavVIDvGi~~~----------~~gklvG---Dvd~e~-------v~-~~a~~  253 (285)
T PRK14191        202 DIVCVGVGK----PDLIKASMV---KKGAVVVDIGINRL----------NDGRLVG---DVDFEN-------VA-PKASF  253 (285)
T ss_pred             CEEEEecCC----CCcCCHHHc---CCCcEEEEeecccc----------cCCceec---cccHHH-------Hh-hhccE
Confidence            999999863    357888875   99999999986553          1356554   442111       00 01135


Q ss_pred             EccCCCCCcHHHHHHHHHHHH
Q 019081          307 ITPHVGGVTEHSYRSMAKVVG  327 (346)
Q Consensus       307 iTPH~a~~t~~~~~~~~~~~~  327 (346)
                      +||--||.-+-+..-+.+..+
T Consensus       254 iTPVPGGVGpvT~a~L~~N~~  274 (285)
T PRK14191        254 ITPVPGGVGPMTIVSLLENTL  274 (285)
T ss_pred             EecCCCCChHHHHHHHHHHHH
Confidence            899877765544433333333

>PLN00203 glutamyl-tRNA reductase

Probab=98.04  E-value=8e-06  Score=83.30  Aligned_cols=102  Identities=22%  Similarity=0.294  Sum_probs=70.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      ++.+++|+|||.|.||+.+++.|...|+ +|++++|+..+.......   +       ...........++.+.+.+||+
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~---~-------~g~~i~~~~~~dl~~al~~aDV  332 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREE---F-------PDVEIIYKPLDEMLACAAEADV  332 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH---h-------CCCceEeecHhhHHHHHhcCCE
Confidence            4889999999999999999999999997 699999976542110000   0       0000000123467788999999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCC-------cEEEEcCCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKG-------SLLVNIARGG  264 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~g-------ailIN~sRg~  264 (346)
                      |+.+.|   .+..+|.++.++.|+++       -+|||.|-..
T Consensus       333 VIsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        333 VFTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             EEEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            999865   45568999999887532       3677776544

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=3.6e-05  Score=72.55  Aligned_cols=80  Identities=18%  Similarity=0.373  Sum_probs=66.2

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||.|. +|+.+|..|...|+.|+.+.++.                              .++.+..++|
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------------------------~~l~~~~~~A  203 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------------------------KNLRHHVRNA  203 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------------------------CCHHHHHhhC
Confidence            4589999999999999 99999999999999999876421                              2678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      |+|+++++..    +++..+.   +|+|+++||+|--.
T Consensus       204 DIvi~avG~p----~~v~~~~---vk~gavVIDvGin~  234 (285)
T PRK10792        204 DLLVVAVGKP----GFIPGEW---IKPGAIVIDVGINR  234 (285)
T ss_pred             CEEEEcCCCc----ccccHHH---cCCCcEEEEccccc
Confidence            9999999532    3677755   69999999998443

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.98  E-value=9.2e-06  Score=81.15  Aligned_cols=93  Identities=30%  Similarity=0.469  Sum_probs=66.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  224 (346)
                      .+.|++++|+|.|.||+.+++.++..|+ +|++++|+..+..                 .+....+    ...++.+.+.
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~-----------------~la~~~g~~~~~~~~~~~~l~  241 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE-----------------ELAEEFGGEAIPLDELPEALA  241 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH-----------------HHHHHcCCcEeeHHHHHHHhc
Confidence            4789999999999999999999999998 7999998754321                 0111111    2245667788


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccC-----CCCcEEEEcCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSM-----KKGSLLVNIAR  262 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~m-----k~gailIN~sR  262 (346)
                      ++|+|+.++|.   ...+++.+.++.+     +.+.++|+.+-
T Consensus       242 ~aDvVI~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        242 EADIVISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             cCCEEEECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            99999999764   3446777777654     24567777754

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=3.1e-05  Score=72.97  Aligned_cols=79  Identities=19%  Similarity=0.381  Sum_probs=65.9

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||.|. +|+.+|..|...|+.|+.++...                              .++.+..++|
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------------------------~~l~~~~~~A  208 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------------------------DDLKKYTLDA  208 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------------------------CCHHHHHhhC
Confidence            4689999999999999 99999999999999999876321                              2678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      |+|++++..    .++|..+.   +|+|+++||+|--
T Consensus       209 DIvv~AvG~----p~~i~~~~---vk~gavVIDvGin  238 (287)
T PRK14176        209 DILVVATGV----KHLIKADM---VKEGAVIFDVGIT  238 (287)
T ss_pred             CEEEEccCC----ccccCHHH---cCCCcEEEEeccc
Confidence            999998753    24787774   6899999999853

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=97.97  E-value=9.3e-06  Score=81.74  Aligned_cols=104  Identities=13%  Similarity=0.199  Sum_probs=83.9

Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc------cCCcCCHHHHhhc---CCEEEEeec
Q 019081          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE------KGCHEDIFEFASK---ADVVVCCLS  234 (346)
Q Consensus       164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~ell~~---aDiV~~~lP  234 (346)
                      ||+.+|++|...|++|.+|||+..+..                 .+...      .....+++++.+.   +|+|++++|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~-----------------~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~   63 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTD-----------------EFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVK   63 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHH-----------------HHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECC
Confidence            689999999999999999999865421                 11110      1134688888874   899999999


Q ss_pred             CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      ..+.++.++ ...+..|.+|.++|+++....-+...+.+.+++..+..  +|+
T Consensus        64 ~g~~v~~Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~f--vda  113 (459)
T PRK09287         64 AGAPVDAVI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHF--IGM  113 (459)
T ss_pred             CchHHHHHH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeE--Eec
Confidence            988888888 46788899999999999999999999999999888764  454

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.96  E-value=9.6e-06  Score=77.77  Aligned_cols=95  Identities=28%  Similarity=0.433  Sum_probs=63.2

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhc
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK  225 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~  225 (346)
                      +.|++|+|+|.|.||+.+++.++..| .+|++++|+..+..                 .+....+    ...++.+.+.+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~-----------------~la~~~g~~~~~~~~~~~~l~~  238 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE-----------------ELAKELGGNAVPLDELLELLNE  238 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-----------------HHHHHcCCeEEeHHHHHHHHhc
Confidence            78999999999999999999998866 57999998764311                 1111111    22356778889


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccC-CCCcEEEEcCCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIARGG  264 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~m-k~gailIN~sRg~  264 (346)
                      +|+|+.++|.... ..+ .+..++.. +++.++|+.+...
T Consensus       239 aDvVi~at~~~~~-~~~-~~~~~~~~~~~~~~viDlavPr  276 (311)
T cd05213         239 ADVVISATGAPHY-AKI-VERAMKKRSGKPRLIVDLAVPR  276 (311)
T ss_pred             CCEEEECCCCCch-HHH-HHHHHhhCCCCCeEEEEeCCCC
Confidence            9999999985432 111 22233222 3567888887543

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.91  E-value=6.9e-05  Score=69.92  Aligned_cols=100  Identities=26%  Similarity=0.333  Sum_probs=65.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC---CEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  228 (346)
                      ++++|||+|.||..+++.+...|   .+|.+++|+.....                 .....++  ...+.++++.+||+
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~adv   65 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRA-----------------ALAEEYGVRAATDNQEAAQEADV   65 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHH-----------------HHHHhcCCeecCChHHHHhcCCE
Confidence            47999999999999999998778   78999998754310                 0111111  23567788899999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      |++++|.. ..+.++.. .-..+  +.++|.+.-|-  ..+.+.+.+.
T Consensus        66 Vil~v~~~-~~~~v~~~-l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         66 VVLAVKPQ-VMEEVLSE-LKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             EEEEcCHH-HHHHHHHH-HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            99999843 33333321 11122  46778775553  5666666654

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.90  E-value=2.4e-05  Score=70.12  Aligned_cols=94  Identities=21%  Similarity=0.263  Sum_probs=63.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      ++++|+|.|+||..+|+++...|.+|++-.++..+.......            .+ .......+.++..+.||+|++.+
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~------------~l-~~~i~~~~~~dA~~~aDVVvLAV   68 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAA------------AL-GPLITGGSNEDAAALADVVVLAV   68 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHH------------hh-ccccccCChHHHHhcCCEEEEec
Confidence            589999999999999999999999999886654432110000            00 00012357889999999999999


Q ss_pred             cCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       234 Plt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      |.. ....+ -++....+. |-++|++.-.
T Consensus        69 P~~-a~~~v-~~~l~~~~~-~KIvID~tnp   95 (211)
T COG2085          69 PFE-AIPDV-LAELRDALG-GKIVIDATNP   95 (211)
T ss_pred             cHH-HHHhH-HHHHHHHhC-CeEEEecCCC
Confidence            964 32222 233333344 8899998654

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.90  E-value=1.9e-05  Score=73.96  Aligned_cols=104  Identities=20%  Similarity=0.278  Sum_probs=67.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccC--CCEE-EEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081          154 KTVFILGFGNIGVELAKRLRPF--GVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~--G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  228 (346)
                      .++||||+|.||+.+++.+...  ++++ .++|++..+..                 .+.+..+  ...++++++.++|+
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~-----------------~~a~~~~~~~~~~~~ell~~~Dv   64 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAE-----------------NLASKTGAKACLSIDELVEDVDL   64 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHH-----------------HHHHhcCCeeECCHHHHhcCCCE
Confidence            3799999999999999988764  5774 46787653311                 1111111  24689999999999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH---HHHHHHHHhCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECGH  279 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g~  279 (346)
                      |+++.|...-     -.-....++.|.-++..+-|.+.|.   +.|.++.+++.
T Consensus        65 Vvi~a~~~~~-----~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g  113 (265)
T PRK13304         65 VVECASVNAV-----EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN  113 (265)
T ss_pred             EEEcCChHHH-----HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence            9999874221     1112233556666677788887763   46666666654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.89  E-value=2.6e-05  Score=73.50  Aligned_cols=104  Identities=18%  Similarity=0.253  Sum_probs=70.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhcccccccccccc-C--CcCCHHHHhhcC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKA  226 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~a  226 (346)
                      .+++|||+|.||.++++.+...|    .+|.+++++......                ...... .  ...+..+++.+|
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~----------------~l~~~~~~~~~~~~~~e~~~~a   65 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFN----------------QLYDKYPTVELADNEAEIFTKC   65 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHH----------------HHHHHcCCeEEeCCHHHHHhhC
Confidence            37999999999999999998777    689999875422100                000111 1  135677889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      |+|++++|. .....++ .+....++++..+|.+.=|  +..+.|-+.+..
T Consensus        66 DvVilavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~  112 (277)
T PRK06928         66 DHSFICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPG  112 (277)
T ss_pred             CEEEEecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            999999994 3333333 2222346678899998777  677788877643

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.89  E-value=7.5e-05  Score=57.69  Aligned_cols=67  Identities=30%  Similarity=0.500  Sum_probs=54.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      ..+.+++++|+|.|.+|+.+++.+..+ +.+|.++|+                                          |
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------------d   56 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------------D   56 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------------C
Confidence            568899999999999999999999988 456666531                                          9


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +++.+.|..    +.+.++..+.|++++++++++
T Consensus        57 i~i~~~~~~----~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          57 ILVTATPAG----VPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             EEEEcCCCC----CCchHHHHHhcCCCCEEEecC
Confidence            999888753    455666788899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=9e-05  Score=69.76  Aligned_cols=123  Identities=24%  Similarity=0.407  Sum_probs=86.2

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.+|..|...|+.|+.+...                              ..++.+..++|
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~------------------------------T~~l~~~~~~A  201 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR------------------------------TKDLPQVAKEA  201 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            5789999999999987 5999999999889999987532                              13678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |||+++++.    .+++..+.+   |+|+++||++--.+          .+|++.|   ||-...-       .. --=.
T Consensus       202 DIvI~AvG~----~~~i~~~~v---k~GavVIDvGin~~----------~~gkl~G---Dvdfe~~-------~~-~a~~  253 (284)
T PRK14170        202 DILVVATGL----AKFVKKDYI---KPGAIVIDVGMDRD----------ENNKLCG---DVDFDDV-------VE-EAGF  253 (284)
T ss_pred             CEEEEecCC----cCccCHHHc---CCCCEEEEccCccc----------CCCCeec---ccchHHH-------Hh-hccE
Confidence            999999874    347888874   89999999985553          1366654   5521110       00 1136


Q ss_pred             EccCCCCCcHHHHHHHHHHHHH
Q 019081          307 ITPHVGGVTEHSYRSMAKVVGD  328 (346)
Q Consensus       307 iTPH~a~~t~~~~~~~~~~~~~  328 (346)
                      +||-=||.-+-+...+.+..++
T Consensus       254 iTPVPGGVGpvT~a~L~~N~~~  275 (284)
T PRK14170        254 ITPVPGGVGPMTITMLLANTLK  275 (284)
T ss_pred             ecCCCCChHHHHHHHHHHHHHH
Confidence            7998788755544333333333

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=7.5e-05  Score=70.41  Aligned_cols=115  Identities=23%  Similarity=0.441  Sum_probs=84.3

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.+|..|...|+.|+.++..                              ..++.+..++|
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~------------------------------t~~l~~~~~~A  202 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK------------------------------TKNLAELTKQA  202 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC------------------------------chhHHHHHHhC
Confidence            4689999999999986 5999999999999999987531                              13678899999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+.+++.    .++|+.+++   |+|+++||++.-.+          .+|++.|   ||-..+       ... ---.
T Consensus       203 DIvI~AvG~----p~~i~~~~i---k~gavVIDvGi~~~----------~~gkl~G---Dvd~e~-------v~~-~a~~  254 (284)
T PRK14190        203 DILIVAVGK----PKLITADMV---KEGAVVIDVGVNRL----------ENGKLCG---DVDFDN-------VKE-KASY  254 (284)
T ss_pred             CEEEEecCC----CCcCCHHHc---CCCCEEEEeecccc----------CCCCeec---cCcHHH-------Hhh-hceE
Confidence            999999863    348998886   89999999987664          1355554   552111       011 1246


Q ss_pred             EccCCCCCcHHHHH
Q 019081          307 ITPHVGGVTEHSYR  320 (346)
Q Consensus       307 iTPH~a~~t~~~~~  320 (346)
                      +||.-||.-+-+..
T Consensus       255 iTPVPGGVGpvT~a  268 (284)
T PRK14190        255 ITPVPGGVGPMTIT  268 (284)
T ss_pred             ecCCCCCChHHHHH
Confidence            89988887655443

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.87  E-value=0.00026  Score=66.72  Aligned_cols=123  Identities=21%  Similarity=0.295  Sum_probs=86.3

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.....                              ..++.+..++|
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~------------------------------T~~l~~~~~~A  200 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK------------------------------TRNLKQLTKEA  200 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC------------------------------CCCHHHHHhhC
Confidence            4689999999999987 5999999999999999887431                              13678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+++++.    .++++.++   .|+|+++||++--.+.          +|++.|   ||-..+-       . ----.
T Consensus       201 DIvI~AvG~----p~~i~~~~---vk~GavVIDvGin~~~----------~gkl~G---DVd~~~v-------~-~~a~~  252 (282)
T PRK14169        201 DILVVAVGV----PHFIGADA---VKPGAVVIDVGISRGA----------DGKLLG---DVDEAAV-------A-PIASA  252 (282)
T ss_pred             CEEEEccCC----cCccCHHH---cCCCcEEEEeeccccC----------CCCeee---cCcHHHH-------H-hhccE
Confidence            999999974    34788887   5899999999854431          355544   5532211       0 11246


Q ss_pred             EccCCCCCcHHHHHHHHHHHHH
Q 019081          307 ITPHVGGVTEHSYRSMAKVVGD  328 (346)
Q Consensus       307 iTPH~a~~t~~~~~~~~~~~~~  328 (346)
                      +||-=||.-+-+...+.+..++
T Consensus       253 iTPVPGGVGp~T~a~L~~N~~~  274 (282)
T PRK14169        253 ITPVPGGVGPMTIASLMAQTVT  274 (282)
T ss_pred             ecCCCCCcHHHHHHHHHHHHHH
Confidence            8998888655544333333333

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.87  E-value=1.3e-05  Score=69.21  Aligned_cols=104  Identities=17%  Similarity=0.294  Sum_probs=62.0

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccc--ccccccCCcCCHHHHhhcCCEEEEe
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID--DLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      +|+|+|.|+.|.++|..+...|.+|..|.|+......-.    ..+.......  .+........++++++++||+|+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~----~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiia   76 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEIN----ETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIA   76 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHH----HHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH----HhCCCCCCCCCcccCcccccccCHHHHhCcccEEEec
Confidence            689999999999999999999999999998653210000    0000000000  0001111246899999999999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +|.. ..+.++ ++....++++..+|++..|=
T Consensus        77 vPs~-~~~~~~-~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   77 VPSQ-AHREVL-EQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             S-GG-GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred             ccHH-HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence            9953 223332 23334467899999998663

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.85  E-value=9.2e-05  Score=65.87  Aligned_cols=111  Identities=19%  Similarity=0.198  Sum_probs=67.3

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhc
Q 019081          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK  225 (346)
Q Consensus       148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~  225 (346)
                      +..+.++++.|+|. |.+|+.+++.+...|.+|+.++|+..+.......   +....+  ..... ......++.+.+++
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~---l~~~~~--~~~~~~~~~~~~~~~~~~~~   97 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADS---LRARFG--EGVGAVETSDDAARAAAIKG   97 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH---HHhhcC--CcEEEeeCCCHHHHHHHHhc
Confidence            45688999999996 9999999999998999999998875321100000   000000  00000 00112345578889


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD  267 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd  267 (346)
                      +|+|+.+.|....+  .+..+  ...+++.+++|+.+...++
T Consensus        98 ~diVi~at~~g~~~--~~~~~--~~~~~~~vv~D~~~~~~~~  135 (194)
T cd01078          98 ADVVFAAGAAGVEL--LEKLA--WAPKPLAVAADVNAVPPVG  135 (194)
T ss_pred             CCEEEECCCCCcee--chhhh--cccCceeEEEEccCCCCCC
Confidence            99999988865431  11111  1245578888887777554

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.84  E-value=0.00028  Score=66.91  Aligned_cols=134  Identities=22%  Similarity=0.299  Sum_probs=89.9

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+.+ |+.+|..|..-|+.|+.+...                              ..++++..++|
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~------------------------------T~nl~~~~~~A  211 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR------------------------------TPDPESIVREA  211 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            46899999999999875 999999999889999987532                              12678899999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCCce
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNV  305 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nv  305 (346)
                      |+|++++..    .++|..+.+   |+|+++||+|--.+-+.     ...+| ++.   =||-..+-        ...--
T Consensus       212 DIvv~AvGk----~~~i~~~~v---k~gavVIDvGin~~~~~-----~~~~g~kl~---GDvd~e~v--------~~~a~  268 (299)
T PLN02516        212 DIVIAAAGQ----AMMIKGDWI---KPGAAVIDVGTNAVSDP-----SKKSGYRLV---GDVDFAEV--------SKVAG  268 (299)
T ss_pred             CEEEEcCCC----cCccCHHHc---CCCCEEEEeeccccCcc-----cccCCCceE---cCcChHHh--------hhhce
Confidence            999999864    368888874   89999999985442111     11123 443   35532110        11123


Q ss_pred             EEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 019081          306 LITPHVGGVTEHSYRSMAKVVGDVALQLH  334 (346)
Q Consensus       306 iiTPH~a~~t~~~~~~~~~~~~~ni~~~~  334 (346)
                      .+||--||.-+-+..-+.+..++..++++
T Consensus       269 ~iTPVPGGVGp~T~a~L~~N~v~a~~~~~  297 (299)
T PLN02516        269 WITPVPGGVGPMTVAMLLKNTVDGAKRVF  297 (299)
T ss_pred             EecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            58998787765554444444444444443

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.84  E-value=4.2e-05  Score=72.17  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=65.5

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhcccccccccccc-CCc-CCHHHHhhc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCH-EDIFEFASK  225 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~ell~~  225 (346)
                      ..+.++++.|+|.|.+|++++..|+..| .+|++++|+..+......             ...... ... .++.+.+.+
T Consensus       119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~-------------~~~~~~~~~~~~~~~~~~~~  185 (278)
T PRK00258        119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK-------------LFGALGKAELDLELQEELAD  185 (278)
T ss_pred             CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-------------Hhhhccceeecccchhcccc
Confidence            4678999999999999999999999999 689999997643211000             000000 001 134566788


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +|+|+.++|.......-...-.+..++++.+++++.-.+
T Consensus       186 ~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P  224 (278)
T PRK00258        186 FDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP  224 (278)
T ss_pred             CCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC
Confidence            999999999754321101111223457778888886544

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.84  E-value=0.00023  Score=72.04  Aligned_cols=150  Identities=15%  Similarity=0.197  Sum_probs=92.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccC--CCEEEEEcCCCccccccccccchhhhccccccccccc----cC-CcCCHHHHhhcC
Q 019081          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE----KG-CHEDIFEFASKA  226 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~l~ell~~a  226 (346)
                      .+|+|||+|.+|..+|..++..  |++|+++|.+......-..  ...+..+..+.++..+    .. ...+.++.+++|
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~--g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a   79 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNS--DQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA   79 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHc--CCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence            4799999999999999999855  6899999986543211000  0000001111122111    01 125677889999


Q ss_pred             CEEEEeecCCcccc------------CCC--CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe-cCCCC
Q 019081          227 DVVVCCLSLNKQTA------------GIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTE  291 (346)
Q Consensus       227 DiV~~~lPlt~~T~------------~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~E  291 (346)
                      |++++|+| ||...            .+.  -++.-..+++|.++|.-|.-.+=.++.+..-|.+.. .|.-+. +|.+|
T Consensus        80 dvi~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PE  157 (473)
T PLN02353         80 DIVFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPE  157 (473)
T ss_pred             CEEEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCC
Confidence            99999998 33321            111  123445578999999999988888889988887631 121112 35677


Q ss_pred             CCCCCC---CCCCCCceEE
Q 019081          292 PFDPND---PILKFKNVLI  307 (346)
Q Consensus       292 Pl~~~~---pL~~~~nvii  307 (346)
                      =+.+.+   .+...|.|++
T Consensus       158 rl~~G~a~~d~~~p~riVi  176 (473)
T PLN02353        158 FLAEGTAIEDLFKPDRVLI  176 (473)
T ss_pred             ccCCCCcccccCCCCEEEE
Confidence            666655   4555566664

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.84  E-value=7.3e-05  Score=70.27  Aligned_cols=80  Identities=19%  Similarity=0.324  Sum_probs=66.0

Q ss_pred             ccccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-| .+|+.+|.+|...|+.|+.....                              ..++.+..++|
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~------------------------------T~~l~~~~~~A  201 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF------------------------------TKDLKAHTKKA  201 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CcCHHHHHhhC
Confidence            468999999999999 88999999999889999876421                              12678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      |+|++++..    .+++..+++   |+|+++||++--.
T Consensus       202 DIvV~AvGk----p~~i~~~~v---k~gavvIDvGin~  232 (281)
T PRK14183        202 DIVIVGVGK----PNLITEDMV---KEGAIVIDIGINR  232 (281)
T ss_pred             CEEEEecCc----ccccCHHHc---CCCcEEEEeeccc
Confidence            999999863    357888874   8999999998443

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.82  E-value=1.4e-05  Score=70.70  Aligned_cols=118  Identities=17%  Similarity=0.203  Sum_probs=70.6

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc----cchhhhcccccc-----ccccccCCcCCHHHHhhc
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ----SSALAVKNGIID-----DLVDEKGCHEDIFEFASK  225 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~~~~l~ell~~  225 (346)
                      +|+|||.|.||+.+|..+...|++|..||++..........    +..+ +..+.+.     ..........+++++. .
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~   78 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRL-VRKGRLSQEEADAALARISFTTDLEEAV-D   78 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHH-HHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhh-hhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence            69999999999999999999999999999976532111100    0000 0000000     0000011246888888 9


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      ||+|+=++|-.-+.+.-+-++.-+.++++++|...+  +-+.-.+|...+.
T Consensus        79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT--Ssl~i~~la~~~~  127 (180)
T PF02737_consen   79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNT--SSLSISELAAALS  127 (180)
T ss_dssp             ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE----SSS-HHHHHTTSS
T ss_pred             hheehhhccccHHHHHHHHHHHHHHhCCCceEEecC--CCCCHHHHHhccC
Confidence            999999999877766656666666788999876653  3355666777664

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.81  E-value=9.4e-05  Score=69.64  Aligned_cols=79  Identities=15%  Similarity=0.353  Sum_probs=65.9

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.+|..|..-|+.|+..+...                              .++.+..++|
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------------------------~~l~~~~~~A  203 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------------------------QNLPSIVRQA  203 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            4689999999999987 59999999999999999876321                              3678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      |+|+++++.    .+++..+.   .|+|+++||++--
T Consensus       204 DIvIsAvGk----~~~i~~~~---ik~gavVIDvGin  233 (284)
T PRK14177        204 DIIVGAVGK----PEFIKADW---ISEGAVLLDAGYN  233 (284)
T ss_pred             CEEEEeCCC----cCccCHHH---cCCCCEEEEecCc
Confidence            999999874    35788887   4899999999853

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.79  E-value=9.8e-05  Score=69.49  Aligned_cols=115  Identities=26%  Similarity=0.434  Sum_probs=82.4

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.+|..|...|+.|+.+....                              .++.+..++|
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------------------------~nl~~~~~~A  201 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA  201 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            4689999999999987 59999999998899999875321                              3688889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|++++..    .++++.+.   .|+|+++||++--.+          .+|++.|   ||-...       .. ----.
T Consensus       202 DIvIsAvGk----p~~i~~~~---vk~GavVIDvGin~~----------~~gkl~G---DVd~~~-------v~-~~a~~  253 (282)
T PRK14166        202 DLIIVAAGC----VNLLRSDM---VKEGVIVVDVGINRL----------ESGKIVG---DVDFEE-------VS-KKSSY  253 (282)
T ss_pred             CEEEEcCCC----cCccCHHH---cCCCCEEEEeccccc----------CCCCeeC---CCCHHH-------HH-hhccE
Confidence            999999874    35788887   489999999984432          1345544   442111       01 11246


Q ss_pred             EccCCCCCcHHHHH
Q 019081          307 ITPHVGGVTEHSYR  320 (346)
Q Consensus       307 iTPH~a~~t~~~~~  320 (346)
                      +||-=||.-+-+..
T Consensus       254 iTPVPGGVGp~T~a  267 (282)
T PRK14166        254 ITPVPGGVGPMTIA  267 (282)
T ss_pred             ecCCCCCchHHHHH
Confidence            79987887654443

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.79  E-value=5.9e-05  Score=72.84  Aligned_cols=122  Identities=19%  Similarity=0.240  Sum_probs=73.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccc-cccccc--cccCCcCCHHHHhhcCCEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG-IIDDLV--DEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~ell~~aDiV~  230 (346)
                      ++|+|||.|.||..+|..|...|.+|.+++|+....  ... ..+..+... ......  .......+. +.++.+|+|+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~--~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   78 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGD--ELR-AHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL   78 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHH--HHH-hcCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence            479999999999999999999999999999853210  000 000000000 000000  000012234 5678999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      +++|. +.+..++ .+....++++.++|.+.- ++-..+.+.+.+...++..
T Consensus        79 l~vk~-~~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~~~  127 (341)
T PRK08229         79 VTVKS-AATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATVLA  127 (341)
T ss_pred             EEecC-cchHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcEEE
Confidence            99985 4444444 334455788899888854 4455666777776655433

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.78  E-value=0.00011  Score=69.71  Aligned_cols=127  Identities=20%  Similarity=0.288  Sum_probs=88.0

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.+|.+|...|+.|+.+...                              ..++.+..++|
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~------------------------------T~~l~~~~~~A  202 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR------------------------------TQDLASITREA  202 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            4689999999999987 5999999999999999887431                              13688889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+++++..    +++..+.   .|+|+++||++--.+-+..      ++|++.|   ||-..+       ... ---.
T Consensus       203 DIvIsAvGkp----~~i~~~~---ik~gavVIDvGin~~~~~~------~~gkl~G---Dvd~~~-------v~~-~a~~  258 (297)
T PRK14186        203 DILVAAAGRP----NLIGAEM---VKPGAVVVDVGIHRLPSSD------GKTRLCG---DVDFEE-------VEP-VAAA  258 (297)
T ss_pred             CEEEEccCCc----CccCHHH---cCCCCEEEEeccccccccc------cCCceeC---CccHHH-------HHh-hceE
Confidence            9999999742    5788887   4899999999865532211      1455544   553211       011 1236


Q ss_pred             EccCCCCCcHHHHHHHHHHHHH
Q 019081          307 ITPHVGGVTEHSYRSMAKVVGD  328 (346)
Q Consensus       307 iTPH~a~~t~~~~~~~~~~~~~  328 (346)
                      +||--||.-+-+...+.+..++
T Consensus       259 iTPVPGGVGp~T~a~L~~Nl~~  280 (297)
T PRK14186        259 ITPVPGGVGPMTVTMLLVNTVL  280 (297)
T ss_pred             ecCCCCCchHHHHHHHHHHHHH
Confidence            8999888765554433333333

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.77  E-value=5.6e-05  Score=72.88  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=63.2

Q ss_pred             EEEEecCHHHHHHHHHHc-cCCCEEEEEcCCCccccccccccchhhh--ccccccccccccC--CcCCHHHHhhcCCEEE
Q 019081          156 VFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAV--KNGIIDDLVDEKG--CHEDIFEFASKADVVV  230 (346)
Q Consensus       156 vgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~l~ell~~aDiV~  230 (346)
                      |||+|||+||+.+++.+. .-+++|+++...............+|..  ............+  ...++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            699999999999999876 3478988765422110000000000110  0000000000001  1346899999999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      .|.   +.+.++.+++.+.+|+++++|+-.-
T Consensus        81 e~T---p~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        81 DAT---PGGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             ECC---CCCCChhhHHHHHhCCcCEEEECCC
Confidence            875   5677899999999999999988653

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.77  E-value=0.00019  Score=67.51  Aligned_cols=113  Identities=23%  Similarity=0.450  Sum_probs=82.3

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.+|..|..-|+.|+.+....                              .++.+..++|
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------------------------~~l~~~~~~A  202 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------------------------KNLKEVCKKA  202 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            4589999999999986 59999999998999999876321                              2678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+++++..    ++|..+.   .|+|+++||++--.+           .|++.|   ||-..+-       .. ---.
T Consensus       203 DIvIsAvGkp----~~i~~~~---ik~gavVIDvGin~~-----------~gkl~G---Dvd~~~v-------~~-~a~~  253 (278)
T PRK14172        203 DILVVAIGRP----KFIDEEY---VKEGAIVIDVGTSSV-----------NGKITG---DVNFDKV-------ID-KASY  253 (278)
T ss_pred             CEEEEcCCCc----CccCHHH---cCCCcEEEEeecccc-----------CCceee---eccHHHH-------Hh-hccE
Confidence            9999998743    4788887   589999999974432           255554   6621110       00 1135


Q ss_pred             EccCCCCCcHHHH
Q 019081          307 ITPHVGGVTEHSY  319 (346)
Q Consensus       307 iTPH~a~~t~~~~  319 (346)
                      +||--||.-+-+.
T Consensus       254 iTPVPGGVGp~T~  266 (278)
T PRK14172        254 ITPVPGGVGSLTT  266 (278)
T ss_pred             ecCCCCCccHHHH
Confidence            8999888765443

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.77  E-value=0.0005  Score=64.91  Aligned_cols=133  Identities=24%  Similarity=0.357  Sum_probs=91.4

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.+|..|...|+.|+.+....                              .++.+..++|
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------------------------~~l~~~~~~A  199 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------------------------QDLPAVTRRA  199 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            4689999999999986 59999999998999998875321                              2678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC--CeEEEEecCCCCCCCCCCCCCCCCc
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH--LGGLGIDVAWTEPFDPNDPILKFKN  304 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~--i~ga~lDV~~~EPl~~~~pL~~~~n  304 (346)
                      |+|++++..    .++++.+.+   |+|+++||++--.+.+        +.|+  +.|   ||- .+       .... -
T Consensus       200 DIvIsAvGk----p~~i~~~~v---k~GavVIDVGin~~~~--------~~gk~~l~G---DVd-~~-------v~~~-a  252 (287)
T PRK14173        200 DVLVVAVGR----PHLITPEMV---RPGAVVVDVGINRVGG--------NGGRDILTG---DVH-PE-------VAEV-A  252 (287)
T ss_pred             CEEEEecCC----cCccCHHHc---CCCCEEEEccCccccC--------CCCceeeec---ccc-Hh-------HHhh-C
Confidence            999999863    258888875   8999999998665422        1344  543   553 11       1111 1


Q ss_pred             eEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 019081          305 VLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT  337 (346)
Q Consensus       305 viiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~  337 (346)
                      -.+||-=||.-+-+...+.+..++..++...|+
T Consensus       253 ~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~~  285 (287)
T PRK14173        253 GALTPVPGGVGPMTVAMLMANTVIAALRRRGGR  285 (287)
T ss_pred             cEEecCCCChhHHHHHHHHHHHHHHHHHHccCC
Confidence            258998777655544444444444444444444

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.76  E-value=0.0001  Score=68.97  Aligned_cols=98  Identities=32%  Similarity=0.400  Sum_probs=73.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (346)
                      .++||||+|+||++++..+..-|    .+|++.+|+.....                 .+...++  ...+.+++..++|
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~-----------------~l~~~~g~~~~~~~~~~~~~ad   64 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA-----------------ALAAEYGVVTTTDNQEAVEEAD   64 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH-----------------HHHHHcCCcccCcHHHHHhhCC
Confidence            58999999999999999998888    58999998765421                 1222232  2457778999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCC---CCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMK---KGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk---~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      +|++++..  +    .-.+.++.+|   ++.++|.++=|  |..+.|.+.|.
T Consensus        65 vv~LavKP--q----~~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~  108 (266)
T COG0345          65 VVFLAVKP--Q----DLEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG  108 (266)
T ss_pred             EEEEEeCh--H----hHHHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence            99999964  2    2356667776   68999999776  56677777775

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.75  E-value=0.00013  Score=68.97  Aligned_cols=80  Identities=24%  Similarity=0.450  Sum_probs=66.6

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+.+ |+.+|..|...|+.|+.+....                              .++.+..++|
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------------------------~~l~~~~~~A  204 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------------------------RDLADYCSKA  204 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence            46899999999999875 9999999999999999875421                              3678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      |+|+++++.    .+++..+++   |+|+++||++--.
T Consensus       205 DIvVsAvGk----p~~i~~~~i---k~gaiVIDVGin~  235 (294)
T PRK14187        205 DILVAAVGI----PNFVKYSWI---KKGAIVIDVGINS  235 (294)
T ss_pred             CEEEEccCC----cCccCHHHc---CCCCEEEEecccc
Confidence            999999874    347888875   7999999997544

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.74  E-value=0.00013  Score=68.88  Aligned_cols=78  Identities=23%  Similarity=0.368  Sum_probs=65.0

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (346)
                      +.++.||++.|||-+.+ |+.+|..|..    .|+.|.....+                              ..++.+.
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~------------------------------t~~l~~~  201 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSR------------------------------TPDLAEE  201 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCC------------------------------chhHHHH
Confidence            46899999999999875 9999999987    78998876532                              1368899


Q ss_pred             hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      +++||+|+.+++    ..++|.++.+   |+|+++||++-
T Consensus       202 ~~~ADIVI~AvG----~p~li~~~~v---k~GavVIDVGi  234 (286)
T PRK14184        202 CREADFLFVAIG----RPRFVTADMV---KPGAVVVDVGI  234 (286)
T ss_pred             HHhCCEEEEecC----CCCcCCHHHc---CCCCEEEEeee
Confidence            999999999995    3457888886   99999999973

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.72  E-value=0.00014  Score=68.39  Aligned_cols=79  Identities=16%  Similarity=0.352  Sum_probs=65.5

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.+|..|..-|+.|+......                              .++.+..++|
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------------------------~dl~~~~k~A  202 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------------------------TDLKSHTTKA  202 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------------------------CCHHHHhhhc
Confidence            4689999999999986 59999999998899999875321                              3678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      |+|+++++.    .++|..++   .|+|+++||++--
T Consensus       203 DIvIsAvGk----p~~i~~~~---vk~gavVIDvGin  232 (282)
T PRK14180        203 DILIVAVGK----PNFITADM---VKEGAVVIDVGIN  232 (282)
T ss_pred             CEEEEccCC----cCcCCHHH---cCCCcEEEEeccc
Confidence            999999974    24788877   4899999999843

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.72  E-value=0.00014  Score=68.65  Aligned_cols=123  Identities=23%  Similarity=0.330  Sum_probs=85.6

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.+|..|..-|+.|+.....                              ..++.+..++|
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~------------------------------T~~L~~~~~~A  203 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK------------------------------THNLSSITSKA  203 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            4579999999999987 5999999999889999886531                              13688889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|++++..    .++|..+.+   |+|+++||+|--.+          .+|++.|   ||-..+-        ..---.
T Consensus       204 DIvV~AvGk----p~~i~~~~v---k~GavVIDvGin~~----------~~gkl~G---DVd~~~v--------~~~a~~  255 (288)
T PRK14171        204 DIVVAAIGS----PLKLTAEYF---NPESIVIDVGINRI----------SGNKIIG---DVDFENV--------KSKVKY  255 (288)
T ss_pred             CEEEEccCC----CCccCHHHc---CCCCEEEEeecccc----------CCCCeEC---CccHHHH--------HhhceE
Confidence            999999973    258888874   89999999984332          2455544   5521110        001136


Q ss_pred             EccCCCCCcHHHHHHHHHHHHH
Q 019081          307 ITPHVGGVTEHSYRSMAKVVGD  328 (346)
Q Consensus       307 iTPH~a~~t~~~~~~~~~~~~~  328 (346)
                      +||-=||.-+-+..-+.+..++
T Consensus       256 iTPVPGGVGp~T~a~L~~N~v~  277 (288)
T PRK14171        256 ITPVPGGIGPMTIAFLLKNTVK  277 (288)
T ss_pred             eCCCCCCcHHHHHHHHHHHHHH
Confidence            7998888765554433333333

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.72  E-value=0.00013  Score=70.20  Aligned_cols=127  Identities=24%  Similarity=0.373  Sum_probs=86.2

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+.| |+.+|..|..-|+.|+......                              .++.+..++|
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------------------------~nl~~~~~~A  258 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------------------------KDPEQITRKA  258 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------------------------CCHHHHHhhC
Confidence            46899999999999875 9999999998899998875321                              2678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCCce
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNV  305 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nv  305 (346)
                      |||+++++.    .+++..+.+   |+|+++||+|--.+-+...     ++| ++.   =||...+-..        ---
T Consensus       259 DIvIsAvGk----p~~v~~d~v---k~GavVIDVGin~~~~~~~-----~~g~klv---GDVdfe~v~~--------~as  315 (345)
T PLN02897        259 DIVIAAAGI----PNLVRGSWL---KPGAVVIDVGTTPVEDSSC-----EFGYRLV---GDVCYEEALG--------VAS  315 (345)
T ss_pred             CEEEEccCC----cCccCHHHc---CCCCEEEEccccccccccc-----cCCCeeE---ecccHHHHHh--------hcc
Confidence            999999874    357888874   8999999998544211100     124 444   3665333110        113


Q ss_pred             EEccCCCCCcHHHHHHHHHHHH
Q 019081          306 LITPHVGGVTEHSYRSMAKVVG  327 (346)
Q Consensus       306 iiTPH~a~~t~~~~~~~~~~~~  327 (346)
                      .+||-=||.-+-+..-+.+..+
T Consensus       316 ~iTPVPGGVGpmTvamLm~N~~  337 (345)
T PLN02897        316 AITPVPGGVGPMTITMLLCNTL  337 (345)
T ss_pred             ccCCCCCchhHHHHHHHHHHHH
Confidence            5789878875554433333333

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.72  E-value=0.00016  Score=68.12  Aligned_cols=122  Identities=23%  Similarity=0.344  Sum_probs=85.3

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+.+ |+.+|.+|..-|+.|+.+...                              ..++.+..++|
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~------------------------------T~nl~~~~~~A  201 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSR------------------------------TADLAGEVGRA  201 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence            45799999999999875 999999999889999987532                              12678889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+++++.    .++|..+++   |+|+++||++--.+.          +|++.|   ||-..+-       .. ---.
T Consensus       202 DIvI~AvGk----~~~i~~~~i---k~gaiVIDvGin~~~----------~gkl~G---DVd~~~v-------~~-~a~~  253 (282)
T PRK14182        202 DILVAAIGK----AELVKGAWV---KEGAVVIDVGMNRLA----------DGKLVG---DVEFAAA-------AA-RASA  253 (282)
T ss_pred             CEEEEecCC----cCccCHHHc---CCCCEEEEeeceecC----------CCCeeC---CCCHHHH-------Hh-hccE
Confidence            999999973    458888874   899999999854432          255544   5532111       00 1135


Q ss_pred             EccCCCCCcHHHHHHHHHHHH
Q 019081          307 ITPHVGGVTEHSYRSMAKVVG  327 (346)
Q Consensus       307 iTPH~a~~t~~~~~~~~~~~~  327 (346)
                      +||--||.-+-+...+.+..+
T Consensus       254 iTPVPGGVGp~T~a~L~~N~~  274 (282)
T PRK14182        254 ITPVPGGVGPMTRAMLLVNTV  274 (282)
T ss_pred             ecCCCCCChHHHHHHHHHHHH
Confidence            899877775554433333333

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.00014  Score=68.92  Aligned_cols=80  Identities=15%  Similarity=0.356  Sum_probs=64.8

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (346)
                      +.++.||++.|||-+. +|+.+|.+|..    .|+.|......                              ..++.+.
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~------------------------------t~~l~~~  203 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSA------------------------------TKDIPSY  203 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCC------------------------------chhHHHH
Confidence            4689999999999987 59999999876    57888876432                              1367889


Q ss_pred             hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +++||+|+.+++..    ++|.++.+   |+|+++||+|-..
T Consensus       204 ~~~ADIvI~Avg~~----~li~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        204 TRQADILIAAIGKA----RFITADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             HHhCCEEEEecCcc----CccCHHHc---CCCCEEEEeeccc
Confidence            99999999999532    68999887   9999999998544

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.71  E-value=4.4e-05  Score=71.69  Aligned_cols=90  Identities=31%  Similarity=0.390  Sum_probs=64.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  228 (346)
                      -|.||||+|||||.=|.+=|..|+.-|.+|++=-|.....-                 ..+.+.+ ..-+.+|+.++||+
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~-----------------~kA~~dGf~V~~v~ea~k~ADv   77 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSW-----------------KKAKEDGFKVYTVEEAAKRADV   77 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhH-----------------HHHHhcCCEeecHHHHhhcCCE
Confidence            58999999999999999999999999999876544332210                 0111112 34689999999999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEE
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLL  257 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gail  257 (346)
                      |.+.+|..- -..++..+.--.||+|+.|
T Consensus        78 im~L~PDe~-q~~vy~~~I~p~Lk~G~aL  105 (338)
T COG0059          78 VMILLPDEQ-QKEVYEKEIAPNLKEGAAL  105 (338)
T ss_pred             EEEeCchhh-HHHHHHHHhhhhhcCCceE
Confidence            999999543 3334444555668888754

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.71  E-value=0.0001  Score=71.25  Aligned_cols=98  Identities=28%  Similarity=0.335  Sum_probs=71.3

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHc-cCCC-EEEEEcCCCccccccccccchhhhcccccccccccc--CCcCCHHHH
Q 019081          148 GETLLGKTVFILGF-GNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEF  222 (346)
Q Consensus       148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~el  222 (346)
                      +.++.+++|.|+|. |.||+.+++.|. ..|. +++.++|+..+..                 .+..+.  +...++++.
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~-----------------~La~el~~~~i~~l~~~  212 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQ-----------------ELQAELGGGKILSLEEA  212 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHH-----------------HHHHHhccccHHhHHHH
Confidence            45799999999999 899999999996 4564 8999988643311                 111111  123468899


Q ss_pred             hhcCCEEEEeecCCccccC-CCCHHHHccCCCCcEEEEcCCCCCCCH
Q 019081          223 ASKADVVVCCLSLNKQTAG-IVNKSFLSSMKKGSLLVNIARGGLLDY  268 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~-li~~~~l~~mk~gailIN~sRg~~vd~  268 (346)
                      +.++|+|+.+.   ..+.. +++.+.+   +++.++|+.|+..=||.
T Consensus       213 l~~aDiVv~~t---s~~~~~~I~~~~l---~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        213 LPEADIVVWVA---SMPKGVEIDPETL---KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             HccCCEEEECC---cCCcCCcCCHHHh---CCCeEEEEecCCCCCCc
Confidence            99999988764   33334 4788754   89999999999887775

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.71  E-value=3.7e-05  Score=69.93  Aligned_cols=102  Identities=25%  Similarity=0.248  Sum_probs=60.7

Q ss_pred             eEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       155 tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      +++||| .|.||+.+++.|...|.+|.+++|+..+.......   +  .+..............+..+.+++||+|++++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~---~--~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav   76 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAK---A--LEELGHGGSDIKVTGADNAEAAKRADVVILAV   76 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHH---H--HhhccccCCCceEEEeChHHHHhcCCEEEEEC
Confidence            799997 89999999999999999999999865431100000   0  00000000000001135678889999999999


Q ss_pred             cCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      |.. ....++  +.+....++.++|+++-|-
T Consensus        77 p~~-~~~~~l--~~l~~~l~~~vvI~~~ngi  104 (219)
T TIGR01915        77 PWD-HVLKTL--ESLRDELSGKLVISPVVPL  104 (219)
T ss_pred             CHH-HHHHHH--HHHHHhccCCEEEEeccCc
Confidence            954 333333  1232222358999997663

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.70  E-value=4e-05  Score=72.86  Aligned_cols=105  Identities=26%  Similarity=0.390  Sum_probs=78.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHh-hcCCEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKADVV  229 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~aDiV  229 (346)
                      -.++||||+|++|+-.|+.+...|+.|+.+||+.-+                   .....++  ..+.++++. +++|+|
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdys-------------------saa~~yg~~~ft~lhdlcerhpDvv  112 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYS-------------------SAAEKYGSAKFTLLHDLCERHPDVV  112 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhH-------------------HHHHHhcccccccHHHHHhcCCCEE
Confidence            458999999999999999999999999999986421                   2223333  356777876 679999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      .+|+-. ..+..++-.--++++|.|++++++-.-....-+++.+-|-+
T Consensus       113 Llctsi-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk  159 (480)
T KOG2380|consen  113 LLCTSI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK  159 (480)
T ss_pred             EEEehh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc
Confidence            999863 34555555455778899999999877777777777776654

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00018  Score=67.82  Aligned_cols=80  Identities=19%  Similarity=0.355  Sum_probs=65.5

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (346)
                      +.++.||++.|||-+. +|+.+|.+|..-    |+.|+.....                              ..++.+.
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~------------------------------T~~l~~~  197 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ------------------------------SENLTEI  197 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC------------------------------CCCHHHH
Confidence            4689999999999987 599999999877    7888876431                              1368889


Q ss_pred             hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +++||+|+++++..    +++..+++   |+|+++||++--.
T Consensus       198 ~~~ADIvV~AvG~p----~~i~~~~i---k~GavVIDvGin~  232 (287)
T PRK14181        198 LKTADIIIAAIGVP----LFIKEEMI---AEKAVIVDVGTSR  232 (287)
T ss_pred             HhhCCEEEEccCCc----CccCHHHc---CCCCEEEEecccc
Confidence            99999999999742    57888874   8999999998554

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.70  E-value=0.00014  Score=70.24  Aligned_cols=122  Identities=21%  Similarity=0.348  Sum_probs=84.1

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+.| |+.+|.+|...|+.|+.+...                              ..++.+..++|
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~------------------------------T~nl~~~~r~A  275 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR------------------------------TKNPEEITREA  275 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC------------------------------CCCHHHHHhhC
Confidence            46899999999999875 999999999999999987532                              13688889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCCce
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNV  305 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nv  305 (346)
                      |||++++..    .++|..+.+   |+|+++||++--.+-+...     ++| ++.   =||-..+-.+        ---
T Consensus       276 DIVIsAvGk----p~~i~~d~v---K~GAvVIDVGIn~~~~~~~-----~~g~klv---GDVdfe~v~~--------~as  332 (364)
T PLN02616        276 DIIISAVGQ----PNMVRGSWI---KPGAVVIDVGINPVEDASS-----PRGYRLV---GDVCYEEACK--------VAS  332 (364)
T ss_pred             CEEEEcCCC----cCcCCHHHc---CCCCEEEeccccccccccc-----cCCCeEE---ecCcHHHHHh--------hcc
Confidence            999999863    357888874   8999999998544311000     113 444   3664322100        113


Q ss_pred             EEccCCCCCcHHHHHHH
Q 019081          306 LITPHVGGVTEHSYRSM  322 (346)
Q Consensus       306 iiTPH~a~~t~~~~~~~  322 (346)
                      .+||-=||.-+-+..-+
T Consensus       333 ~ITPVPGGVGpmTva~L  349 (364)
T PLN02616        333 AVTPVPGGVGPMTIAML  349 (364)
T ss_pred             ccCCCCCchHHHHHHHH
Confidence            47898888765554333

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.69  E-value=7.6e-05  Score=68.61  Aligned_cols=105  Identities=18%  Similarity=0.281  Sum_probs=65.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCC---CE-EEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFG---VK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKA  226 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G---~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~a  226 (346)
                      ..+|||||+|.+|+++++.+...|   .+ +++++++......                .....++  ...+++++++++
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~   67 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLD----------------QLQARYNVSTTTDWKQHVTSV   67 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHH----------------HHHHHcCcEEeCChHHHHhcC
Confidence            568999999999999999887555   33 7777764211100                1111111  235788899999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      |+|++++|.. ..+.++.  .++...++.++|.++=|  ++.+.|-+.+..+
T Consensus        68 DiViiavp~~-~~~~v~~--~l~~~~~~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         68 DTIVLAMPPS-AHEELLA--ELSPLLSNQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             CEEEEecCHH-HHHHHHH--HHHhhccCCEEEEECCC--CCHHHHHHHcCCC
Confidence            9999999943 3233321  12222236789999755  5666676666544

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.68  E-value=7.8e-05  Score=73.60  Aligned_cols=98  Identities=30%  Similarity=0.455  Sum_probs=70.6

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  224 (346)
                      +|.++++.|||.|.||.-+|+.|...|. +|++.+|+..+..                 +++.+.+    ...++.+.+.
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-----------------~La~~~~~~~~~l~el~~~l~  237 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-----------------ELAKKLGAEAVALEELLEALA  237 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-----------------HHHHHhCCeeecHHHHHHhhh
Confidence            4899999999999999999999999995 7899999876531                 1222222    3467788899


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccC-C--CCcEEEEcCCCCCCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSM-K--KGSLLVNIARGGLLD  267 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~m-k--~gailIN~sRg~~vd  267 (346)
                      ++|+|+++.   .....+|..+.+... +  +.-++|+.+=..-|+
T Consensus       238 ~~DvVissT---sa~~~ii~~~~ve~a~~~r~~~livDiavPRdie  280 (414)
T COG0373         238 EADVVISST---SAPHPIITREMVERALKIRKRLLIVDIAVPRDVE  280 (414)
T ss_pred             hCCEEEEec---CCCccccCHHHHHHHHhcccCeEEEEecCCCCCC
Confidence            999999984   455667777765543 2  124777776554433

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.67  E-value=0.0004  Score=64.95  Aligned_cols=116  Identities=28%  Similarity=0.426  Sum_probs=86.9

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.+|+||++.|||-++| |+.++..|..-++.|.+.....                              .++.+..++|
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------------------------~~l~~~~k~A  200 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------------------------KDLASITKNA  200 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------------------------CCHHHHhhhC
Confidence            46899999999999986 8999999999999999876421                              3677889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|++++-.    .+++.++.   .|+|+++|+++--.+-+          +++.|   ||-..+        +....-.
T Consensus       201 DIvv~AvG~----p~~i~~d~---vk~gavVIDVGinrv~~----------~kl~G---DVdf~~--------v~~~a~~  252 (283)
T COG0190         201 DIVVVAVGK----PHFIKADM---VKPGAVVIDVGINRVND----------GKLVG---DVDFDS--------VKEKASA  252 (283)
T ss_pred             CEEEEecCC----cccccccc---ccCCCEEEecCCccccC----------CceEe---eccHHH--------HHHhhcc
Confidence            999999853    35777666   58999999998655433          66654   664332        2223346


Q ss_pred             EccCCCCCcHHHHHH
Q 019081          307 ITPHVGGVTEHSYRS  321 (346)
Q Consensus       307 iTPH~a~~t~~~~~~  321 (346)
                      +||--||.-+-+...
T Consensus       253 iTPVPGGVGPmTvam  267 (283)
T COG0190         253 ITPVPGGVGPMTVAM  267 (283)
T ss_pred             cCCCCCccCHHHHHH
Confidence            899888887766543

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.65  E-value=8.4e-05  Score=72.19  Aligned_cols=98  Identities=16%  Similarity=0.219  Sum_probs=67.6

Q ss_pred             HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081          165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       165 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~lPlt~~T~~l  242 (346)
                      |..+|..|...|++|++||++.........             +.....+  ...+..+++++||+|++++|....++.+
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~-------------~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~V   98 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELW-------------KKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEI   98 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHH-------------HHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHH
Confidence            788999998889999999987542100000             0011111  2357778899999999999955436666


Q ss_pred             CCHHHHccCCCCcEEEEcCCCCCCCH-HHHHHHHH
Q 019081          243 VNKSFLSSMKKGSLLVNIARGGLLDY-EAIAHYLE  276 (346)
Q Consensus       243 i~~~~l~~mk~gailIN~sRg~~vd~-~aL~~aL~  276 (346)
                      + ......+++|+++||++.+..... +.+.+.+.
T Consensus        99 l-~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557         99 A-KNILPHLPENAVICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             H-HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            6 356677899999999999876554 55556664

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.62  E-value=0.00028  Score=66.55  Aligned_cols=114  Identities=20%  Similarity=0.367  Sum_probs=83.6

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (346)
                      +.++.||++.|||-+. +|+.+|..|..  .|+.|+.....                              ..++.+..+
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~------------------------------T~~l~~~~k  202 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG------------------------------TRDLAAHTR  202 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC------------------------------CCCHHHHHH
Confidence            4689999999999976 59999999987  78999887532                              136888999


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCc
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  304 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  304 (346)
                      +||+|+++++..    ++|..+.   .|+|+++||++.-.+          .+|++.|   ||- .+       ..... 
T Consensus       203 ~ADIvV~AvGkp----~~i~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a-  253 (284)
T PRK14193        203 RADIIVAAAGVA----HLVTADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVA-  253 (284)
T ss_pred             hCCEEEEecCCc----CccCHHH---cCCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhC-
Confidence            999999998743    5788887   489999999986553          2456554   664 22       11111 


Q ss_pred             eEEccCCCCCcHHHHH
Q 019081          305 VLITPHVGGVTEHSYR  320 (346)
Q Consensus       305 viiTPH~a~~t~~~~~  320 (346)
                      -.+||-=||.-+-+..
T Consensus       254 ~~iTPVPGGVGp~T~a  269 (284)
T PRK14193        254 GAVSPNPGGVGPMTRA  269 (284)
T ss_pred             CEEeCCCCChhHHHHH
Confidence            2589998887555443

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.61  E-value=0.00016  Score=69.44  Aligned_cols=91  Identities=16%  Similarity=0.223  Sum_probs=60.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHcc-CC-CEEEEEcCCCccccccccccchhhhcccccccccccc--C-CcCCHHHHhhcC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--G-CHEDIFEFASKA  226 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~ell~~a  226 (346)
                      ..++|+|||+|.+|+.+++.+.. ++ .+|.+|+|+..+......             ......  . ...+.++++++|
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~-------------~~~~~g~~~~~~~~~~~av~~a  190 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAA-------------ELRAQGFDAEVVTDLEAAVRQA  190 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH-------------HHHhcCCceEEeCCHHHHHhcC
Confidence            46799999999999999985443 44 579999997654211110             110000  1 236788899999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      |+|+++.|.+   ..++..+.   +|+|+.+.-++
T Consensus       191 DIVi~aT~s~---~pvl~~~~---l~~g~~i~~ig  219 (314)
T PRK06141        191 DIISCATLST---EPLVRGEW---LKPGTHLDLVG  219 (314)
T ss_pred             CEEEEeeCCC---CCEecHHH---cCCCCEEEeeC
Confidence            9998877643   45676654   68999444344

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.60  E-value=0.00031  Score=66.50  Aligned_cols=80  Identities=18%  Similarity=0.336  Sum_probs=64.3

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (346)
                      +.++.||++.|||-+.+ |+.+|.+|..-    ++.|+.....                              ..++.+.
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~nl~~~  201 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR------------------------------SKNLKKE  201 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC------------------------------CCCHHHH
Confidence            45799999999999875 99999999765    6888876431                              1368888


Q ss_pred             hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      .++||+|+++++.    .++|..++   .|+|+++||++--.
T Consensus       202 ~~~ADIvIsAvGk----p~~i~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        202 CLEADIIIAALGQ----PEFVKADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             HhhCCEEEEccCC----cCccCHHH---cCCCCEEEEecCcc
Confidence            9999999999874    24788877   58999999998544

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.55  E-value=0.00014  Score=72.35  Aligned_cols=93  Identities=17%  Similarity=0.349  Sum_probs=64.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhcccccccccccc-----CCcCCHHHH
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-----GCHEDIFEF  222 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~el  222 (346)
                      ..+.|+++.|||.|.+|+.+++.|...|. ++++++|+..+..                 .+...+     ..+.++.++
T Consensus       177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~-----------------~La~~~~~~~~~~~~~l~~~  239 (414)
T PRK13940        177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQ-----------------KITSAFRNASAHYLSELPQL  239 (414)
T ss_pred             cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHH-----------------HHHHHhcCCeEecHHHHHHH
Confidence            35889999999999999999999999996 6999999764321                 111111     123566788


Q ss_pred             hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      +.++|+|+++.+..   ..+|..+...  .+.-++|+.|=.
T Consensus       240 l~~aDiVI~aT~a~---~~vi~~~~~~--~~~~~~iDLavP  275 (414)
T PRK13940        240 IKKADIIIAAVNVL---EYIVTCKYVG--DKPRVFIDISIP  275 (414)
T ss_pred             hccCCEEEECcCCC---CeeECHHHhC--CCCeEEEEeCCC
Confidence            99999999997643   3466666542  123456666533

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.54  E-value=0.00039  Score=65.97  Aligned_cols=132  Identities=18%  Similarity=0.316  Sum_probs=86.4

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (346)
                      +.++.||++.|||-+. +|+.+|..|..-    |+.|+.....                              ..++.+.
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~------------------------------T~~l~~~  205 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR------------------------------SKNLARH  205 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC------------------------------CcCHHHH
Confidence            5689999999999986 599999999876    7888876431                              1367888


Q ss_pred             hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC--CeEEEEecCCCCCCCCCCCCC
Q 019081          223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH--LGGLGIDVAWTEPFDPNDPIL  300 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~--i~ga~lDV~~~EPl~~~~pL~  300 (346)
                      .++||+|++++..    .+++..+.+   |+|+++||++--.+-+.      ..+|+  +.|   ||-..+       ..
T Consensus       206 ~~~ADIvVsAvGk----p~~i~~~~i---k~gavVIDvGin~~~~~------~~~g~~~~~G---DVdfe~-------v~  262 (297)
T PRK14168        206 CQRADILIVAAGV----PNLVKPEWI---KPGATVIDVGVNRVGTN------ESTGKAILSG---DVDFDA-------VK  262 (297)
T ss_pred             HhhCCEEEEecCC----cCccCHHHc---CCCCEEEecCCCccCcc------ccCCCcceec---cccHHH-------HH
Confidence            9999999999863    347888874   89999999986543211      12343  433   442111       11


Q ss_pred             CCCceEEccCCCCCcHHHHHHHHHHHHHHHHHH
Q 019081          301 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL  333 (346)
Q Consensus       301 ~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~  333 (346)
                      . ---.+||--||.-+-+...+.+..++..+++
T Consensus       263 ~-~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~  294 (297)
T PRK14168        263 E-IAGKITPVPGGVGPMTIAMLMRNTLKSAKFH  294 (297)
T ss_pred             h-hccEecCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            1 1135899877776555444444444443433

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.52  E-value=0.00017  Score=68.97  Aligned_cols=91  Identities=14%  Similarity=0.147  Sum_probs=64.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (346)
                      ..++++|||.|.+|+..++.+.. ++. +|.+|+|+..+......             .......  ...+.++++++||
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~-------------~~~~~~~~~~~~~~~~av~~aD  190 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCA-------------HARALGPTAEPLDGEAIPEAVD  190 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-------------HHHhcCCeeEECCHHHHhhcCC
Confidence            56799999999999999998853 664 69999997654211110             1100000  1357889999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      +|+.+.|.+   ..+++.    .+|||+.++.++.
T Consensus       191 iVitaT~s~---~Pl~~~----~~~~g~hi~~iGs  218 (304)
T PRK07340        191 LVVTATTSR---TPVYPE----AARAGRLVVAVGA  218 (304)
T ss_pred             EEEEccCCC---CceeCc----cCCCCCEEEecCC
Confidence            999998754   356764    2699999999974

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.51  E-value=0.00035  Score=67.44  Aligned_cols=94  Identities=13%  Similarity=0.163  Sum_probs=62.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      .++.++++.|||.|.||+.+|+.|...|. +|++.+|+....+.               .+.      ....-++..++|
T Consensus       170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~---------------~~~------~~~~~~~~~~~D  228 (338)
T PRK00676        170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPY---------------RTV------VREELSFQDPYD  228 (338)
T ss_pred             CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccch---------------hhh------hhhhhhcccCCC
Confidence            36899999999999999999999999996 69999997642100               000      001114457899


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +|+++.-.|.....++..+.++..++ -++|+.|=..
T Consensus       229 vVIs~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPR  264 (338)
T PRK00676        229 VIFFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPR  264 (338)
T ss_pred             EEEEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCC
Confidence            99997433444455677776655433 3677765433

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.50  E-value=0.00023  Score=68.72  Aligned_cols=90  Identities=13%  Similarity=0.128  Sum_probs=62.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcC
Q 019081          153 GKTVFILGFGNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  226 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  226 (346)
                      -+++||||+|.+|+..++.+..  -.-+|.+|||+..+......             .. ...+    ...+.++++++|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~-------------~~-~~~g~~v~~~~~~~eav~~a  193 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFAL-------------RA-SDYEVPVRAATDPREAVEGC  193 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHH-------------HH-HhhCCcEEEeCCHHHHhccC
Confidence            4689999999999987665542  23579999998654211100             00 0111    246889999999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      |+|++++|.   +..++..+.   +|||+.+.+++-
T Consensus       194 DiVitaT~s---~~P~~~~~~---l~~g~~v~~vGs  223 (325)
T TIGR02371       194 DILVTTTPS---RKPVVKADW---VSEGTHINAIGA  223 (325)
T ss_pred             CEEEEecCC---CCcEecHHH---cCCCCEEEecCC
Confidence            999999875   345777665   599999998873

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.50  E-value=0.00021  Score=64.24  Aligned_cols=111  Identities=27%  Similarity=0.315  Sum_probs=71.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcccccccccc---chhhh-ccc----cccc--------ccc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQS---SALAV-KNG----IIDD--------LVD  211 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~---~~~~~-~~~----~~~~--------~~~  211 (346)
                      ..|..++|+|+|+|.+|..+|+.|...|. +++.+|+..-....-.+..   ..... +.+    .+..        ...
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            56888999999999999999999999999 6999998621110000000   00000 000    0000        000


Q ss_pred             ccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          212 EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       212 ~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      ......++.++++++|+|+-+ ..+.+++.++..+....++...++...
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~  144 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS  144 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence            000123566788999999998 578889999988888888877766643

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.50  E-value=0.00027  Score=67.03  Aligned_cols=120  Identities=15%  Similarity=0.207  Sum_probs=71.9

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP  234 (346)
                      +++|+|.|.||..+|..|...|.+|..++| ...... .. ..++.+.... ...........+.++....+|+|++++|
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~-~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vilavk   77 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKA-LR-ERGLVIRSDH-GDAVVPGPVITDPEELTGPFDLVILAVK   77 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHH-HH-hCCeEEEeCC-CeEEecceeecCHHHccCCCCEEEEEec
Confidence            699999999999999999988999999998 322100 00 0011000000 0000000012456666789999999999


Q ss_pred             CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      . ..+..++ +..-...+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        78 ~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         78 A-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             c-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            4 3444333 2222335678888877665 44567777777665654

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.49  E-value=0.00031  Score=65.97  Aligned_cols=112  Identities=13%  Similarity=0.129  Sum_probs=72.2

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHH-hhcC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEF-ASKA  226 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~el-l~~a  226 (346)
                      ...+++++|+|.|.+|++++..+...|++|.+++|+..+...-..             .. ...+  ...++++. +.++
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~-------------~~-~~~~~~~~~~~~~~~~~~~  179 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE-------------RF-QRYGEIQAFSMDELPLHRV  179 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-------------HH-hhcCceEEechhhhcccCc
Confidence            356889999999999999999999999999999987543211000             00 0000  11223332 3579


Q ss_pred             CEEEEeecCCc--cccC-CCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081          227 DVVVCCLSLNK--QTAG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  280 (346)
Q Consensus       227 DiV~~~lPlt~--~T~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  280 (346)
                      |+|+.++|...  .... .++   .+.++++.+++++.-.+.- + .|++..++..+
T Consensus       180 DivInatp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~~G~  231 (270)
T TIGR00507       180 DLIINATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKSLGT  231 (270)
T ss_pred             cEEEECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHHCCC
Confidence            99999999752  2211 233   3447899999999877653 3 57776665543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.49  E-value=0.00021  Score=66.69  Aligned_cols=97  Identities=18%  Similarity=0.249  Sum_probs=61.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      ..++||||+|+||.++++.+..-|    -++++++++....                  ..    ....+..+++.+||+
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------------------~~----~~~~~~~~~~~~~D~   60 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------------------PF----VYLQSNEELAKTCDI   60 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------------------Ce----EEeCChHHHHHhCCE
Confidence            458999999999999999988655    2488888754321                  00    012356677889999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      |++++|. ..++.++.. .-..++++ .+|.+.-|  +..+.+-+.+.
T Consensus        61 Vilavkp-~~~~~vl~~-i~~~l~~~-~iIS~~aG--i~~~~l~~~~~  103 (260)
T PTZ00431         61 IVLAVKP-DLAGKVLLE-IKPYLGSK-LLISICGG--LNLKTLEEMVG  103 (260)
T ss_pred             EEEEeCH-HHHHHHHHH-HHhhccCC-EEEEEeCC--ccHHHHHHHcC
Confidence            9999984 445555432 22234444 45555444  34555555554

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.46  E-value=0.00064  Score=64.52  Aligned_cols=80  Identities=18%  Similarity=0.370  Sum_probs=64.1

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~----G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (346)
                      +.++.||++.|||-+. +|+.+|.+|...    ++.|+.....                              ..++.+.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~~l~~~  201 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR------------------------------TDDLAAK  201 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC------------------------------CCCHHHH
Confidence            4579999999999987 599999999755    7888876421                              1367888


Q ss_pred             hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      .++||+|++++-.    .+++..++   .|+|+++||++--.
T Consensus       202 ~~~ADIvIsAvGk----p~~i~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        202 TRRADIVVAAAGV----PELIDGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             HhhCCEEEEccCC----cCccCHHH---cCCCCEEEEccccc
Confidence            9999999998853    34888877   58999999998544

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.41  E-value=0.0024  Score=58.48  Aligned_cols=125  Identities=19%  Similarity=0.169  Sum_probs=72.5

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccc----cccccchhhhccccccccccccCCcCCHHHHh-
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ----VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-  223 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-  223 (346)
                      .++.|+++.|.|+|++|+.+|+.|..+|++|+++..+......    +......+..+.+-+.....  ....+.++++ 
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~--~~~~~~~~i~~  104 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPG--AERITNEELLE  104 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCC--ceecCCcccee
Confidence            6789999999999999999999999999999955332111000    00000000000000000000  0011222322 


Q ss_pred             hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                      .+||+++-|.+.     +.|+.+...+++ =.+++--+-+++ . ..-.+.|+++.|..+
T Consensus       105 ~~~Dvlip~a~~-----~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~  156 (227)
T cd01076         105 LDCDILIPAALE-----NQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVLVV  156 (227)
T ss_pred             ecccEEEecCcc-----CccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEE
Confidence            478999887643     467888888887 334555556665 4 556688888877643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.37  E-value=0.00083  Score=63.51  Aligned_cols=129  Identities=19%  Similarity=0.231  Sum_probs=74.6

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP  234 (346)
                      +++|||.|.||..+|..|...|.+|..++|+...... ... .++.+.++   ..........+..++ +.+|+|++++|
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~-~~~-~g~~~~~~---~~~~~~~~~~~~~~~-~~~d~vila~k   75 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDA-LNE-NGLRLEDG---EITVPVLAADDPAEL-GPQDLVILAVK   75 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHH-HHH-cCCcccCC---ceeecccCCCChhHc-CCCCEEEEecc
Confidence            6999999999999999999889999999985432110 000 01100000   000000112445555 89999999999


Q ss_pred             CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEE--EecCCCCC
Q 019081          235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG--IDVAWTEP  292 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~--lDV~~~EP  292 (346)
                      .. ++..++. ..-..+.++..+|...-| +-.++.+.+.+...++.+..  ..++..+|
T Consensus        76 ~~-~~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p  132 (304)
T PRK06522         76 AY-QLPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGP  132 (304)
T ss_pred             cc-cHHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCC
Confidence            43 4433322 222345677888887776 33456666666655554322  23344455

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.36  E-value=0.00059  Score=69.29  Aligned_cols=76  Identities=20%  Similarity=0.266  Sum_probs=51.2

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      +.++.+++++|+|.|.+|++++..+...|++|++++|+..+.....             ...........++.+ +.++|
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la-------------~~~~~~~~~~~~~~~-l~~~D  392 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALA-------------SRCQGKAFPLESLPE-LHRID  392 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-------------HHhccceechhHhcc-cCCCC
Confidence            4567899999999999999999999999999999998653311000             000000001122222 56899


Q ss_pred             EEEEeecCCc
Q 019081          228 VVVCCLSLNK  237 (346)
Q Consensus       228 iV~~~lPlt~  237 (346)
                      +|++++|...
T Consensus       393 iVInatP~g~  402 (477)
T PRK09310        393 IIINCLPPSV  402 (477)
T ss_pred             EEEEcCCCCC
Confidence            9999999753

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.32  E-value=0.00041  Score=67.03  Aligned_cols=67  Identities=28%  Similarity=0.311  Sum_probs=48.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  231 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~  231 (346)
                      ++||||||-|..|+.++..++.+|++|++.|+..........            +....... ....+.++.+.||+|+.
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va------------~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVA------------DRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcc------------cceeecCCCCHHHHHHHHhhCCEEEE
Confidence            479999999999999999999999999999987654211110            01111111 23468899999999975

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.29  E-value=0.014  Score=54.25  Aligned_cols=128  Identities=16%  Similarity=0.055  Sum_probs=74.5

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc----ccc---chhhhcccc-cccccccc--CCcC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS----CQS---SALAVKNGI-IDDLVDEK--GCHE  217 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~----~~~---~~~~~~~~~-~~~~~~~~--~~~~  217 (346)
                      +.++.|+||.|-|+|++|+.+|+.|..+|++|+++..+......+.    ...   ..+.-..+- +......+  ....
T Consensus        33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~  112 (254)
T cd05313          33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF  112 (254)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence            4679999999999999999999999999999995432111100000    000   000000000 00010000  0112


Q ss_pred             CHHHHh-hcCCEEEEeecCCccccCCCCHHHHccCC--CCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          218 DIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK--KGSLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       218 ~l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk--~gailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      +-++++ .+|||++-|     .+.+.|+.+...+++  +=.+++-.+-|++-.  +-.+.|+++.|.-
T Consensus       113 ~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~v  173 (254)
T cd05313         113 EGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVLF  173 (254)
T ss_pred             CCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcEE
Confidence            233333 579999887     467799999888885  334566667777644  4457788777653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.28  E-value=0.00046  Score=65.47  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=34.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .|+.+||+|+|.+|..-.+.+++||++|+++|++.++
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~k  217 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKK  217 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchh
Confidence            8999999999999999999999999999999987643

>PLN02477 glutamate dehydrogenase

Probab=97.25  E-value=0.014  Score=57.94  Aligned_cols=126  Identities=23%  Similarity=0.266  Sum_probs=75.2

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEE-cCCCccc---cccccccchhhhccccccccccccCCcCCHHHH-
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASH---SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-  222 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~-d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-  222 (346)
                      +.+|.|++|.|.|+|++|+.+|+.|...|++|+++ |.+..-.   --+......+...++.+..+..  ....+.+++ 
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~--a~~i~~~e~l  278 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPG--GDPIDPDDIL  278 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhcccc--ceEecCccce
Confidence            45799999999999999999999999999999954 4431100   0000000000000110111100  011122233 


Q ss_pred             hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                      ..+|||++-|.     ..+.|+++...++| =.+++--+-+++ . .+--+.|++..|..+
T Consensus       279 ~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t-~ea~~~L~~rGI~~~  331 (410)
T PLN02477        279 VEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-D-PEADEILRKKGVVVL  331 (410)
T ss_pred             eccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-C-HHHHHHHHHCCcEEE
Confidence            35799988764     45689999888875 456777788887 3 334588888877543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.25  E-value=0.00086  Score=63.53  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=62.7

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccc-cccCCcCCHHHHhhcCC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKAD  227 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aD  227 (346)
                      .+.++++.|+|.|.+|++++..|...|+ +|+++||+..+...-...   +.  .    ... .......++.+.++++|
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~---l~--~----~~~~~~~~~~~~~~~~~~~aD  194 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADE---LN--A----RFPAARATAGSDLAAALAAAD  194 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH---HH--h----hCCCeEEEeccchHhhhCCCC
Confidence            4678999999999999999999999998 799999976442111000   00  0    000 00001234566778899


Q ss_pred             EEEEeecCCcc-ccC-CCCHHHHccCCCCcEEEEcCCCC
Q 019081          228 VVVCCLSLNKQ-TAG-IVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       228 iV~~~lPlt~~-T~~-li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +|+.+.|.--. +.. .++.   +.++++.+++++.-.+
T Consensus       195 iVInaTp~Gm~~~~~~~~~~---~~l~~~~~v~DivY~P  230 (284)
T PRK12549        195 GLVHATPTGMAKHPGLPLPA---ELLRPGLWVADIVYFP  230 (284)
T ss_pred             EEEECCcCCCCCCCCCCCCH---HHcCCCcEEEEeeeCC
Confidence            99999986421 111 2232   2345666666665444

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.23  E-value=0.00073  Score=65.23  Aligned_cols=95  Identities=18%  Similarity=0.128  Sum_probs=64.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      ..++++|||.|.+|+..++.+. .++. +|.+|+|+..+.......   +  +.    ...-......++++.+++||+|
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~---~--~~----~~g~~v~~~~~~~~av~~aDiV  198 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQ---L--SS----LLGIDVTAATDPRAAMSGADII  198 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHH---H--Hh----hcCceEEEeCCHHHHhccCCEE
Confidence            3579999999999999999886 4675 699999986542111100   0  00    0000001246789999999999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +.+.|.+   ..+|..+.   +|+|+.+..++
T Consensus       199 vtaT~s~---~p~i~~~~---l~~g~~i~~vg  224 (326)
T TIGR02992       199 VTTTPSE---TPILHAEW---LEPGQHVTAMG  224 (326)
T ss_pred             EEecCCC---CcEecHHH---cCCCcEEEeeC
Confidence            9998754   35777665   68999888775

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.20  E-value=0.00075  Score=65.13  Aligned_cols=91  Identities=13%  Similarity=0.182  Sum_probs=62.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHc-cCCC-EEEEEcCCCccccccccccchhhhcccccccccccc----CCcCCHHHHhhc
Q 019081          152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK----GCHEDIFEFASK  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ell~~  225 (346)
                      ..++++|||.|.+|+..++.+. ..++ +|.+++|+..+......             .+....    ....++++++++
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~  192 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQ-------------EIQSKFNTEIYVVNSADEAIEE  192 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHH-------------HHHHhcCCcEEEeCCHHHHHhc
Confidence            4679999999999999887654 4566 68999987654211110             000011    124678999999


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      ||+|+++.|..   ..++. +   .+|+|+.++.++.
T Consensus       193 aDiVi~aT~s~---~p~i~-~---~l~~G~hV~~iGs  222 (325)
T PRK08618        193 ADIIVTVTNAK---TPVFS-E---KLKKGVHINAVGS  222 (325)
T ss_pred             CCEEEEccCCC---CcchH-H---hcCCCcEEEecCC
Confidence            99999998854   34665 4   4699999988854

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.16  E-value=0.0042  Score=62.19  Aligned_cols=123  Identities=20%  Similarity=0.190  Sum_probs=72.9

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhh---------c---cccccccccccC-
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV---------K---NGIIDDLVDEKG-  214 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~-  214 (346)
                      |.+|.|++|.|.|+|++|...|+.|..+|++|+++..+......+    .++.+         +   ++-+.......+ 
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~----~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga  298 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDP----DGIDREKLDYIMELKNLYRGRIREYAEKYGC  298 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECC----CCCCHHHHHHHHHHHhhcCCchhhhHhhcCC
Confidence            468999999999999999999999999999999854322110000    00100         0   010111111101 


Q ss_pred             CcCCHHHHh-hcCCEEEEeecCCccccCCCCHHHHccCCC-CcEEEEc-CCCCCCCHHHHHHHHHhCCCe
Q 019081          215 CHEDIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKK-GSLLVNI-ARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       215 ~~~~l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~-gailIN~-sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ...+-++++ ..|||++-|.     +.+.|+.+...+++. |..+|-. +-| .+..++. +.|.+..|.
T Consensus       299 ~~i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~  361 (444)
T PRK14031        299 KYVEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL  361 (444)
T ss_pred             EEcCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence            112333443 5689888754     567899998888874 5545555 555 5555554 555555553

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.15  E-value=0.0038  Score=62.57  Aligned_cols=128  Identities=14%  Similarity=0.114  Sum_probs=74.8

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEE-cCCCccc-c--ccccccchhhhcc-ccccccccccC-CcCCHHH
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASH-S--QVSCQSSALAVKN-GIIDDLVDEKG-CHEDIFE  221 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~-d~~~~~~-~--~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~e  221 (346)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+..-. +  -+......+.-.+ +-+..+....+ ...+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            45789999999999999999999999999999987 5322100 0  0000000000000 00111111001 1123344


Q ss_pred             Hh-hcCCEEEEeecCCccccCCCCHHHHccCC-CC-cEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          222 FA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK-KG-SLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       222 ll-~~aDiV~~~lPlt~~T~~li~~~~l~~mk-~g-ailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      ++ .+|||++-|..     .+.|+.+...+++ ++ .+++-.+-|++  +.+-.+.|.++.|.-
T Consensus       307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~~  363 (445)
T PRK09414        307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVLF  363 (445)
T ss_pred             ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcEE
Confidence            44 37999988764     4578888776663 23 45666777887  444557788877653

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.14  E-value=0.0049  Score=56.10  Aligned_cols=122  Identities=21%  Similarity=0.160  Sum_probs=69.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEE-EcCCCcccccc---ccccchhhhccccccccccccCCcCCHHHHh-
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHSQV---SCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-  223 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-  223 (346)
                      .+|.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+..- ..+   ......+....+-+.. ... ....+-++++ 
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i-~~~Gld~~~l~~~~~~~~~~~~-~~~-~~~~~~~~l~~   95 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYI-YDPGITTEELINYAVALGGSAR-VKV-QDYFPGEAILG   95 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcE-ECCCCCHHHHHHHHHhhCCccc-cCc-ccccCccccee
Confidence            578999999999999999999999999997665 4543300 000   0000000000000000 000 0001112222 


Q ss_pred             hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      .+||+++-|.+.+     .|+.+....++ =.+++--+-+++-+  .-.+.|++..+.
T Consensus        96 ~~~DVlipaA~~~-----~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          96 LDVDIFAPCALGN-----VIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             ccccEEeeccccC-----ccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            4799999887643     78888887777 34555666777654  345666666554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.14  E-value=0.0012  Score=70.37  Aligned_cols=132  Identities=18%  Similarity=0.151  Sum_probs=82.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc---cccchhhhccccccc-----cccccCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (346)
                      ++|+|||.|.||..+|..+...|++|+.||++........   .......+..+.+..     .........++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            6899999999999999999989999999998764321100   000000011110000     00000112456 44799


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  289 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  289 (346)
                      ||+|+=++|-..+.+.-+-++.-+.++++++|...+  +-+.-.+|.++++. +=.-.++-.|.
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~~g~Hff~  453 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNT--STISISLLAKALKR-PENFCGMHFFN  453 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-CccEEEEecCC
Confidence            999999999888877777777777789998875443  33556667777653 22234555553

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.11  E-value=0.00066  Score=65.22  Aligned_cols=94  Identities=17%  Similarity=0.184  Sum_probs=55.1

Q ss_pred             CeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aD  227 (346)
                      +++||||.|..|+.-++.+.. ++. +|.+|+|+..+......             .... .+    ...+.++++++||
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~-------------~~~~-~~~~v~~~~~~~~av~~aD  194 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAA-------------RLRD-LGVPVVAVDSAEEAVRGAD  194 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHH-------------HHHC-CCTCEEEESSHHHHHTTSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHH-------------hhcc-ccccceeccchhhhcccCC
Confidence            489999999999998887753 555 69999998654211111             1111 11    2468999999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      +|+.+.|.+..+ -+++.+.   +|+|+.++.++....
T Consensus       195 ii~taT~s~~~~-P~~~~~~---l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  195 IIVTATPSTTPA-PVFDAEW---LKPGTHINAIGSYTP  228 (313)
T ss_dssp             EEEE----SSEE-ESB-GGG---S-TT-EEEE-S-SST
T ss_pred             EEEEccCCCCCC-ccccHHH---cCCCcEEEEecCCCC
Confidence            999998766533 6777764   689999999986543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK06046 alanine dehydrogenase; Validated

Probab=97.09  E-value=0.001  Score=64.19  Aligned_cols=89  Identities=24%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcC
Q 019081          153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  226 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  226 (346)
                      -++|||||+|.+|+..++.+. ..+. +|.++||+..+......             ......+    ...+++++++ +
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~l~-a  194 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVE-------------RMSSVVGCDVTVAEDIEEACD-C  194 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHH-------------HHHhhcCceEEEeCCHHHHhh-C
Confidence            469999999999999998776 3465 47788987644211110             0000001    1357889887 9


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      |+|++++|.+   ..+++.+.   +|+|+.+..++
T Consensus       195 DiVv~aTps~---~P~~~~~~---l~~g~hV~~iG  223 (326)
T PRK06046        195 DILVTTTPSR---KPVVKAEW---IKEGTHINAIG  223 (326)
T ss_pred             CEEEEecCCC---CcEecHHH---cCCCCEEEecC
Confidence            9999998854   46777775   58999888886

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.06  E-value=0.00047  Score=55.13  Aligned_cols=88  Identities=22%  Similarity=0.291  Sum_probs=57.0

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      .+.|++|.|||.|.+|..-++.|...|++|+++.+..... ...             ..+.     ...+++-+..+|+|
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~-~~~-------------i~~~-----~~~~~~~l~~~~lV   64 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFS-EGL-------------IQLI-----RREFEEDLDGADLV   64 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHH-HTS-------------CEEE-----ESS-GGGCTTESEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhh-hhH-------------HHHH-----hhhHHHHHhhheEE
Confidence            5889999999999999999999999999999998763100 000             0111     12334557789988


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +.+.+. ++    +++......+.--+++|++
T Consensus        65 ~~at~d-~~----~n~~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   65 FAATDD-PE----LNEAIYADARARGILVNVV   91 (103)
T ss_dssp             EE-SS--HH----HHHHHHHHHHHTTSEEEET
T ss_pred             EecCCC-HH----HHHHHHHHHhhCCEEEEEC
Confidence            887653 22    4555556666566788874

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.06  E-value=0.0012  Score=63.90  Aligned_cols=94  Identities=15%  Similarity=0.175  Sum_probs=60.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      ..++++|||.|.+|+..+..+.. .+. +|.+|+|+..+...-...   +  .+    ...-......++++++++||+|
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~---~--~~----~~g~~v~~~~d~~~al~~aDiV  201 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAAD---L--RA----ELGIPVTVARDVHEAVAGADII  201 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH---H--hh----ccCceEEEeCCHHHHHccCCEE
Confidence            35799999999999998887763 554 799999876542111000   0  00    0000001246889999999999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      +.+.|..   ..++..+.   +|+|+.+..+
T Consensus       202 i~aT~s~---~p~i~~~~---l~~g~~v~~v  226 (330)
T PRK08291        202 VTTTPSE---EPILKAEW---LHPGLHVTAM  226 (330)
T ss_pred             EEeeCCC---CcEecHHH---cCCCceEEee
Confidence            9998754   35776655   5778766654

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.05  E-value=0.0014  Score=61.19  Aligned_cols=127  Identities=22%  Similarity=0.311  Sum_probs=65.6

Q ss_pred             HHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCH
Q 019081          168 LAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNK  245 (346)
Q Consensus       168 vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~  245 (346)
                      +|+.|+..|  .+|+++|++......        +++.+.++.      ...+ .+.+++||+|++|+|.. .+..++ +
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~--------a~~~g~~~~------~~~~-~~~~~~~DlvvlavP~~-~~~~~l-~   63 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEA--------ALELGIIDE------ASTD-IEAVEDADLVVLAVPVS-AIEDVL-E   63 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHH--------HHHTTSSSE------EESH-HHHGGCCSEEEE-S-HH-HHHHHH-H
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHH--------HHHCCCeee------ccCC-HhHhcCCCEEEEcCCHH-HHHHHH-H
Confidence            355666555  899999987643211        111111111      1123 57889999999999953 344443 3


Q ss_pred             HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe-cCCCC---CCCCCCCCCCCCceEEccCCC
Q 019081          246 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTE---PFDPNDPILKFKNVLITPHVG  312 (346)
Q Consensus       246 ~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~E---Pl~~~~pL~~~~nviiTPH~a  312 (346)
                      +....+++|+++++++.-..--.+++.+.+.. .....+.= -|.+|   |..++..|+.-.++++||+-.
T Consensus        64 ~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~-~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   64 EIAPYLKPGAIVTDVGSVKAPIVEAMERLLPE-GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             HHHCGS-TTSEEEE--S-CHHHHHHHHHHHTS-SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             HhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCc-ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            34456899999999976554334444444441 11111111 12222   222345788888999999865

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.04  E-value=0.015  Score=56.86  Aligned_cols=162  Identities=15%  Similarity=0.186  Sum_probs=111.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc--cccCCcCCHHHH---hhcCCE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKGCHEDIFEF---ASKADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~el---l~~aDi  228 (346)
                      ..+|+||+|-||+.+|......|++|.+|||+..+......             +..  .......+++|+   |+.---
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~-------------~~~~~k~i~~~~sieefV~~Le~PRk   70 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLA-------------ERAKGKNIVPAYSIEEFVASLEKPRK   70 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHH-------------hCccCCCccccCcHHHHHHHhcCCce
Confidence            46999999999999999999999999999998755311110             011  011134566665   466777


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEc
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT  308 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiT  308 (346)
                      |++++-.-.....+| ++.+-.|-+|-++|+-+-..--|+..-.++|.+.-|...+.-|-..|-=    -+.. |-  + 
T Consensus        71 I~lMVkAG~~VD~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeG----A~~G-PS--i-  141 (473)
T COG0362          71 ILLMVKAGTPVDAVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEG----ARHG-PS--I-  141 (473)
T ss_pred             EEEEEecCCcHHHHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccc----cccC-CC--c-
Confidence            888875432112333 3566678899999999999999999999999999999999999877732    1111 11  1 


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 019081          309 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT  340 (346)
Q Consensus       309 PH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~  340 (346)
                        +-|.+.++++....++ +.|.+-..|+|..
T Consensus       142 --MpGG~~eay~~v~pil-~~IaAk~~g~pCc  170 (473)
T COG0362         142 --MPGGQKEAYELVAPIL-TKIAAKVDGEPCC  170 (473)
T ss_pred             --CCCCCHHHHHHHHHHH-HHHHhhcCCCCce
Confidence              2277889998876554 4455555577653

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.03  E-value=0.00031  Score=63.20  Aligned_cols=45  Identities=29%  Similarity=0.443  Sum_probs=38.1

Q ss_pred             ccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       142 ~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      .|+......|.+++|.|+|+|.+|..+|+.|...|. ++..+|+..
T Consensus        10 ~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        10 DIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             hcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            355444567999999999999999999999999998 799998763

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.00  E-value=0.0019  Score=61.84  Aligned_cols=126  Identities=13%  Similarity=0.102  Sum_probs=75.7

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|||.|.+|..+|..+...|. +|+.+|...........   .+.  +........ ......++++ +++||+|++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~---d~~--~~~~~~~~~~~i~~t~d~~~-~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKAL---DMY--EASPVGGFDTKVTGTNNYAD-TANSDIVVI   75 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHH---hhh--hhhhccCCCcEEEecCCHHH-hCCCCEEEE
Confidence            589999999999999999887665 89999985432110000   000  000000000 0101256766 789999999


Q ss_pred             eecCCccccCC-------CCH-------HHHccCCCCcEEEEcCCCCCCCHHHHHHH--HHhCCCeEEE--Ee
Q 019081          232 CLSLNKQTAGI-------VNK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG--ID  286 (346)
Q Consensus       232 ~lPlt~~T~~l-------i~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~--lD  286 (346)
                      +++ ++...+.       .|.       +.+....+++++|+++-.-=+-...+.+.  +...++-|.+  ||
T Consensus        76 tag-~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        76 TAG-LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             cCC-CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            988 3333332       121       22344457899999976555555556555  5566777775  77

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.99  E-value=0.0022  Score=61.93  Aligned_cols=95  Identities=18%  Similarity=0.222  Sum_probs=67.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      -++++|||.|..++.-++.++. ++. +|.+|+|++...........         ..+........+.+++++.||+|+
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~---------~~~~~~v~a~~s~~~av~~aDiIv  200 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLR---------KRGGEAVGAADSAEEAVEGADIVV  200 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHH---------hhcCccceeccCHHHHhhcCCEEE
Confidence            3589999999999999988764 565 69999998765322111000         011111123578899999999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      .+.|.++   -++..+.+   |||+.+..++-
T Consensus       201 t~T~s~~---Pil~~~~l---~~G~hI~aiGa  226 (330)
T COG2423         201 TATPSTE---PVLKAEWL---KPGTHINAIGA  226 (330)
T ss_pred             EecCCCC---CeecHhhc---CCCcEEEecCC
Confidence            9987655   68887774   79999999983

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.98  E-value=0.0021  Score=61.60  Aligned_cols=112  Identities=18%  Similarity=0.210  Sum_probs=71.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccc--cccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ--VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|+|.|.-|.++|+.+...|.+|..|.|+.....+  ..+... ...+ ++  .+........++.++++.||+|++
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~-~yLp-~i--~lp~~l~at~Dl~~a~~~ad~iv~   77 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENP-KYLP-GI--LLPPNLKATTDLAEALDGADIIVI   77 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCc-cccC-Cc--cCCcccccccCHHHHHhcCCEEEE
Confidence            58999999999999999999999999998875421100  000000 0000 00  011111235789999999999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHH
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI  271 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL  271 (346)
                      .+|. ...+.++..- -..+++++.+|+++-|=-.+.-.+
T Consensus        78 avPs-~~~r~v~~~l-~~~l~~~~~iv~~sKGie~~t~~l  115 (329)
T COG0240          78 AVPS-QALREVLRQL-KPLLLKDAIIVSATKGLEPETGRL  115 (329)
T ss_pred             ECCh-HHHHHHHHHH-hhhccCCCeEEEEeccccCCCcch
Confidence            9994 3433333222 134679999999997755544333

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.97  E-value=0.0015  Score=61.85  Aligned_cols=79  Identities=16%  Similarity=0.184  Sum_probs=50.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      .+.|+++.|||.|.+|++++..|...|+ +|++++|+..+...-...   +.  ..   ..........++.+.+.++|+
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~---~~--~~---~~~~~~~~~~~~~~~~~~~Di  193 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDL---GV--QV---GVITRLEGDSGGLAIEKAAEV  193 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH---hh--hc---CcceeccchhhhhhcccCCCE
Confidence            4678999999999999999999999998 699999976432110000   00  00   000000001234455678999


Q ss_pred             EEEeecCC
Q 019081          229 VVCCLSLN  236 (346)
Q Consensus       229 V~~~lPlt  236 (346)
                      |+.++|..
T Consensus       194 VInaTp~g  201 (282)
T TIGR01809       194 LVSTVPAD  201 (282)
T ss_pred             EEECCCCC
Confidence            99998864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.93  E-value=0.0015  Score=63.12  Aligned_cols=37  Identities=30%  Similarity=0.436  Sum_probs=34.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .|++|+|+|+|..|....+.++++|++|+++|++..+
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K  202 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK  202 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence            4889999999999999999999999999999998654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.91  E-value=0.00094  Score=64.84  Aligned_cols=44  Identities=27%  Similarity=0.477  Sum_probs=37.1

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      |+......|.+++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus        14 ~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         14 IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            44333467999999999999999999999999998 788898764

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.90  E-value=0.0026  Score=58.96  Aligned_cols=123  Identities=25%  Similarity=0.296  Sum_probs=72.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEE--------cCCCccccccccccchhhhcccc-ccccccc---cCCc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT--------KRSWASHSQVSCQSSALAVKNGI-IDDLVDE---KGCH  216 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~--------d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~  216 (346)
                      .++.|+++.|-|+|++|+.+|+.|...|++|+++        |+..-..    .....+....+. +......   ....
T Consensus        28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~----~~l~~~~~~~~~~v~~~~~~~~~~~~~  103 (244)
T PF00208_consen   28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDV----EELLRIKEERGSRVDDYPLESPDGAEY  103 (244)
T ss_dssp             HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHH----HHHHHHHHHHSSHSTTGTHTCSSTSEE
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchH----HHHHHHHHHhCCcccccccccccceeE
Confidence            4699999999999999999999999999998876        3321110    000000000000 0000000   0000


Q ss_pred             CCHH-HHh-hcCCEEEEeecCCccccCCCCHHHHc-cCCCCcEEEEc-CCCCCCCHHHHHHHHHhCCCeE
Q 019081          217 EDIF-EFA-SKADVVVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNI-ARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       217 ~~l~-ell-~~aDiV~~~lPlt~~T~~li~~~~l~-~mk~gailIN~-sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      .+-+ +++ .+|||++.|.     ..+.|+.+... .+|+|+-+|-- +-+++ ..++.- .|++..|.-
T Consensus       104 ~~~~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~v  166 (244)
T PF00208_consen  104 IPNDDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGILV  166 (244)
T ss_dssp             ECHHCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-EE
T ss_pred             eccccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCEE
Confidence            1221 455 6899999983     34578888888 88877665555 55555 455554 888877753

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.88  E-value=0.001  Score=59.79  Aligned_cols=39  Identities=26%  Similarity=0.298  Sum_probs=35.5

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .-+|.|+++.|||.|.+|...++.|...|++|+++++..
T Consensus         5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~   43 (202)
T PRK06718          5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL   43 (202)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            457999999999999999999999999999999998754

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.88  E-value=0.0025  Score=61.32  Aligned_cols=86  Identities=16%  Similarity=0.191  Sum_probs=56.7

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      -+|||||+|+||+.+++.+... ++++++ +|++.....                ..... .....+.++++.+.|+|++
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~----------------~~~~~-v~~~~d~~e~l~~iDVViI   66 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETL----------------DTETP-VYAVADDEKHLDDVDVLIL   66 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHH----------------hhcCC-ccccCCHHHhccCCCEEEE
Confidence            5899999999999999988754 899876 577632110                00001 1123467777889999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      |.|....     -......++.|.=+|++.
T Consensus        67 ctPs~th-----~~~~~~~L~aG~NVV~s~   91 (324)
T TIGR01921        67 CMGSATD-----IPEQAPYFAQFANTVDSF   91 (324)
T ss_pred             cCCCccC-----HHHHHHHHHcCCCEEECC
Confidence            9885422     133344467777777774

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=96.88  E-value=0.0022  Score=62.41  Aligned_cols=107  Identities=18%  Similarity=0.150  Sum_probs=63.6

Q ss_pred             eEEEEecCHHHHHHHHHHccCC--------CEEEEEcCCC---ccccccccccchhhhccccccc--cccccCCcCCHHH
Q 019081          155 TVFILGFGNIGVELAKRLRPFG--------VKIIATKRSW---ASHSQVSCQSSALAVKNGIIDD--LVDEKGCHEDIFE  221 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G--------~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~e  221 (346)
                      +|+|||.|+.|.++|..+..-|        .+|..|.+..   ....... .... +...+.+..  +.+......++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~-in~~-~~n~~ylpgi~Lp~~i~at~dl~e   78 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEI-INTT-HENVKYLPGIKLPANLVAVPDLVE   78 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHH-HHhc-CCCccccCCCcCCCCeEEECCHHH
Confidence            5899999999999999997656        9999998732   0000000 0000 000000000  0000001358999


Q ss_pred             HhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          222 FASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       222 ll~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      +++.||+|++++|. ...+.++ .+.-..++++..+|+++-|=-
T Consensus        79 al~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie  120 (342)
T TIGR03376        79 AAKGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLE  120 (342)
T ss_pred             HHhcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCcc
Confidence            99999999999994 3434433 222234688899999987743

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.88  E-value=0.0046  Score=60.47  Aligned_cols=151  Identities=13%  Similarity=0.150  Sum_probs=95.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC------CcCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG------CHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~ell~~aD  227 (346)
                      .++.|+|.|-+|...+..+..+|++|+.+|....+-..-..  ...+.-+.-+.++..+..      ...+.++.++++|
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~--g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad   78 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNK--GISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD   78 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhC--CCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence            37899999999999999999999999999986543110000  000000000112222111      2368889999999


Q ss_pred             EEEEeecCCccccCCCCH--------HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe-cCCCCCCCCCCC
Q 019081          228 VVVCCLSLNKQTAGIVNK--------SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTEPFDPNDP  298 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~--------~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EPl~~~~p  298 (346)
                      ++++++|-.+...|-+|-        +..+.++..+++|+=|.-.+=..+.+.+-+.+..-+. -++ ++.+|=|...+-
T Consensus        79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~A  157 (414)
T COG1004          79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSA  157 (414)
T ss_pred             EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcch
Confidence            999999955544565553        3455677779999999999888888888776655332 233 245554554443


Q ss_pred             CC---CCCceEE
Q 019081          299 IL---KFKNVLI  307 (346)
Q Consensus       299 L~---~~~nvii  307 (346)
                      +.   ..+++++
T Consensus       158 v~D~~~PdRIVi  169 (414)
T COG1004         158 VYDFLYPDRIVI  169 (414)
T ss_pred             hhhccCCCeEEE
Confidence            33   3456664

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.87  E-value=0.0044  Score=57.47  Aligned_cols=89  Identities=18%  Similarity=0.290  Sum_probs=58.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      .++-|+|.|.+++++++.++.+|++|+++|++..-.                     .    .    ...+.++.+....
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~---------------------~----~----~~~~~~~~~~~~~  151 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF---------------------P----E----DLPDGVATLVTDE  151 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc---------------------c----c----cCCCCceEEecCC
Confidence            389999999999999999999999999999753210                     0    0    0012233222211


Q ss_pred             cCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      |          .+.+..+.++.++|=+.|+.-.|.+.|..+|++....
T Consensus       152 ~----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~  189 (246)
T TIGR02964       152 P----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGDFA  189 (246)
T ss_pred             H----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence            1          2233334566677777788888888888888544443

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=96.87  E-value=0.0022  Score=68.44  Aligned_cols=132  Identities=17%  Similarity=0.096  Sum_probs=83.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc---cccchhhhccccccc-----cccccCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (346)
                      ++|+|||.|.||..+|..+...|++|+.+|++........   .......++.+.+..     .........+++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5899999999999999999988999999998764321100   000000011110000     000011124564 5799


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  289 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  289 (346)
                      ||+|+=++|-+.+.+.-+-++.=+.++++++|...  -+-++-.+|.++++.- =.-.++..|.
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~p-~r~ig~Hff~  475 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSRP-EKVIGMHYFS  475 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCCc-cceEEEeccC
Confidence            99999999988887777777777789999987533  2335667777776542 2235666664

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.86  E-value=0.0029  Score=62.39  Aligned_cols=100  Identities=21%  Similarity=0.248  Sum_probs=65.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHcc-CC-C-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRP-FG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~-~G-~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      -++++|||.|..++.-++.+.. +. . +|.+|+|+..+........     ... +... .......+.++++++||+|
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~-----~~~-~~~~-~~v~~~~s~~eav~~ADIV  227 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWV-----AET-YPQI-TNVEVVDSIEEVVRGSDIV  227 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH-----HHh-cCCC-ceEEEeCCHHHHHcCCCEE
Confidence            4699999999999999888765 42 4 7999999875432111000     000 0000 0011236899999999999


Q ss_pred             EEeecCCc---cccCCCCHHHHccCCCCcEEEEcCC
Q 019081          230 VCCLSLNK---QTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       230 ~~~lPlt~---~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      +.+.+.+.   .+..+++.+.   +|||+.++.++.
T Consensus       228 vtaT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~  260 (379)
T PRK06199        228 TYCNSGETGDPSTYPYVKREW---VKPGAFLLMPAA  260 (379)
T ss_pred             EEccCCCCCCCCcCcEecHHH---cCCCcEEecCCc
Confidence            99987543   3457787775   579998876654

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.84  E-value=0.003  Score=60.74  Aligned_cols=93  Identities=14%  Similarity=0.089  Sum_probs=63.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      -++++|+|.|..++.-++.+.. +.. +|.+|+|+..+........          ....-......+.++++++||+|+
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~----------~~~~~~v~~~~~~~~av~~ADIV~  197 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYA----------QALGFAVNTTLDAAEVAHAANLIV  197 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH----------HhcCCcEEEECCHHHHhcCCCEEE
Confidence            4699999999999998887653 333 6999999876532111000          000000002367899999999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      .+.|   .+..+++.+.   +|||+.++.++
T Consensus       198 taT~---s~~P~~~~~~---l~~G~hi~~iG  222 (315)
T PRK06823        198 TTTP---SREPLLQAED---IQPGTHITAVG  222 (315)
T ss_pred             EecC---CCCceeCHHH---cCCCcEEEecC
Confidence            9876   4456887775   58999999887

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=96.83  E-value=0.0028  Score=67.51  Aligned_cols=131  Identities=14%  Similarity=0.004  Sum_probs=81.8

Q ss_pred             CeEEEEecCHHHHHHHHHHc-cCCCEEEEEcCCCcccccccc---ccchhhhcccccccc-c----cccCCcCCHHHHhh
Q 019081          154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDDL-V----DEKGCHEDIFEFAS  224 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~-~----~~~~~~~~l~ell~  224 (346)
                      ++|+|||.|.||..+|..+. ..|++|+.||++.........   ......+..+.+... .    .......++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999988 779999999987543111000   000000001100000 0    000012455 4579


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA  288 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~  288 (346)
                      +||+|+=++|-+.+.+.-+-++.=+.++|+++|...  -+-+.-..|.+.++. .=.-+++-.|
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasn--TS~l~i~~la~~~~~-p~r~ig~Hff  449 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASN--TSSLPIGQIAAAAAR-PEQVIGLHYF  449 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHHhcCc-ccceEEEecC
Confidence            999999999988887776667766778999988654  344566677777643 2223556666

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=96.83  E-value=0.003  Score=67.10  Aligned_cols=131  Identities=15%  Similarity=0.038  Sum_probs=80.4

Q ss_pred             CeEEEEecCHHHHHHHHHHc-cCCCEEEEEcCCCccccccccc---cchhhhcccccccc-c----cccCCcCCHHHHhh
Q 019081          154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDDL-V----DEKGCHEDIFEFAS  224 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~-~----~~~~~~~~l~ell~  224 (346)
                      ++|+|||.|.||..+|..+. ..|++|+.||++..........   .....++.+.+... .    .......++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            57999999999999999887 4799999999875421110000   00000011100000 0    000012455 4579


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh-CCCeEEEEecCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC-GHLGGLGIDVAW  289 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~~  289 (346)
                      +||+|+=++|-..+.+.-+-++.-+.++++++|....  +-+.-.+|.++++. +++  .++-.|.
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~p~r~--~g~Hffn  445 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASRPENV--IGLHYFS  445 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCCcccE--EEEecCC
Confidence            9999999999888877777677767789998875443  33555667777643 334  4566653

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.83  E-value=0.0064  Score=56.47  Aligned_cols=105  Identities=22%  Similarity=0.166  Sum_probs=68.9

Q ss_pred             CccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHh
Q 019081          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA  223 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell  223 (346)
                      .|.+|+..||+|+|+ |.||..+|+.+.+.+.+....-|.........     ..       .+....+  ...+++..+
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~-----l~-------~l~e~~~~~~i~s~d~~~  228 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQR-----LT-------LLQEELGRGKIMSLDYAL  228 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhh-----hh-------hcccccCCCeeeeccccc
Confidence            478999999999997 99999999999998887555443222111100     00       1111112  234666666


Q ss_pred             hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH
Q 019081          224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY  268 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~  268 (346)
                      .+.|+++-..  +..+-..|+.+.   +|||+++|+-++..=||+
T Consensus       229 ~~e~i~v~vA--s~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~  268 (351)
T COG5322         229 PQEDILVWVA--SMPKGVEIFPQH---LKPGCLIVDGGYPKDVDT  268 (351)
T ss_pred             cccceEEEEe--ecCCCceechhh---ccCCeEEEcCCcCccccc
Confidence            6667665544  234455777776   699999999998887666

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.83  E-value=0.013  Score=56.18  Aligned_cols=121  Identities=20%  Similarity=0.151  Sum_probs=72.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccCCcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      .+++|||.|.||..+|.+|...|.+|.++.|+....   . ...++.+.. ..... ........+. +.+..+|+|+++
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~---~-~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~D~vila   79 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEA---V-RENGLQVDS-VHGDFHLPPVQAYRSA-EDMPPCDWVLVG   79 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHH---H-HhCCeEEEe-CCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence            589999999999999999999999999998864211   0 000100000 00000 0000001222 346789999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                      +|.. ++...+ ...-..++++..++...-| +-.++.|.+.+...++.++
T Consensus        80 vK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g  127 (313)
T PRK06249         80 LKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG  127 (313)
T ss_pred             ecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence            9954 333322 1222335678888877555 4567778778877776554

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.81  E-value=0.0029  Score=57.34  Aligned_cols=93  Identities=26%  Similarity=0.321  Sum_probs=59.9

Q ss_pred             eEEEEecCHHHHHHHHHHcc--CCCE-EEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEE
Q 019081          155 TVFILGFGNIGVELAKRLRP--FGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~--~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  229 (346)
                      +|||||||.||+.+.+.++.  .+++ |.+||++..+..                 .......  ...+++|++++.|+|
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~-----------------~~~~~~~~~~~s~ide~~~~~Dlv   64 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAK-----------------ELEASVGRRCVSDIDELIAEVDLV   64 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHH-----------------HHHhhcCCCccccHHHHhhcccee
Confidence            79999999999999999984  3455 788998765421                 1111111  236789999999998


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHH
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE  269 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~  269 (346)
                      +=|.... ..+    .-..+.+|.|-=+|=+|-|.+.|+.
T Consensus        65 VEaAS~~-Av~----e~~~~~L~~g~d~iV~SVGALad~~   99 (255)
T COG1712          65 VEAASPE-AVR----EYVPKILKAGIDVIVMSVGALADEG   99 (255)
T ss_pred             eeeCCHH-HHH----HHhHHHHhcCCCEEEEechhccChH
Confidence            8776421 111    1123335666556666678877543

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.81  E-value=0.004  Score=66.29  Aligned_cols=130  Identities=16%  Similarity=0.135  Sum_probs=80.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc---cccchhhhccccccc-ccc----ccCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDD-LVD----EKGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~----~~~~~~~l~ell~~  225 (346)
                      ++|+|||.|.||..+|..+...|++|+.+|++........   .......+..+.+.. ..+    ......++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            5799999999999999999988999999998764321100   000000000100000 000    00012455 44799


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh-CCCeEEEEecC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC-GHLGGLGIDVA  288 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~  288 (346)
                      ||+|+=++|-..+.+.=+-++.-+.++++++|-...  +-++-.+|..+++. .++  .++=.|
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnT--S~l~i~~ia~~~~~p~r~--ig~Hff  452 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNT--STISISLLAKALKRPENF--CGMHFF  452 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHhhcCCcccE--EEEecC
Confidence            999999999888877766677667789999875443  33556667777653 234  344444

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.79  E-value=0.0013  Score=53.35  Aligned_cols=64  Identities=19%  Similarity=0.258  Sum_probs=45.3

Q ss_pred             eEEEEecCHHHHHHHHHHccC--CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh--cCC
Q 019081          155 TVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KAD  227 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aD  227 (346)
                      ++||||+|.+|+.....+...  ++++. ++|++..+..                 ......+  .+.+++++++  +.|
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~~ll~~~~~D   64 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAE-----------------AFAEKYGIPVYTDLEELLADEDVD   64 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHH-----------------HHHHHTTSEEESSHHHHHHHTTES
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHH-----------------HHHHHhcccchhHHHHHHHhhcCC
Confidence            699999999999998777654  66765 5777643321                 1111111  3578999997  789


Q ss_pred             EEEEeecC
Q 019081          228 VVVCCLSL  235 (346)
Q Consensus       228 iV~~~lPl  235 (346)
                      +|+++.|.
T Consensus        65 ~V~I~tp~   72 (120)
T PF01408_consen   65 AVIIATPP   72 (120)
T ss_dssp             EEEEESSG
T ss_pred             EEEEecCC
Confidence            99999985

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=96.76  E-value=0.0049  Score=58.88  Aligned_cols=134  Identities=17%  Similarity=0.159  Sum_probs=82.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc---cccchhhhcccccccc-ccc-cC---CcCCHHHHhh
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDDL-VDE-KG---CHEDIFEFAS  224 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~-~~---~~~~l~ell~  224 (346)
                      -++|||||.|.||+.+|..+..-|++|..+|++........   .....-.++.+.+.+. .+. ..   ...++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            47999999999999999999886799999999843211000   0000000111100010 000 01   123333 689


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE  291 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  291 (346)
                      +||+|+=.+|-+.+.+.-+-++.=...||+++|= |||+   +.-.++.++++ .+=...++=.|.+-
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfNP~  145 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFNPV  145 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccCCC
Confidence            9999999999888877777677667789999874 4443   44567777773 33334566665443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.76  E-value=0.0021  Score=58.03  Aligned_cols=96  Identities=21%  Similarity=0.345  Sum_probs=59.3

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      .-+|.|++|.|||.|.+|..-++.|..+|++|+++++...+....      +.. .+.+ .+..  ..+ . .+.+..+|
T Consensus         4 ~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~------l~~-~~~i-~~~~--~~~-~-~~dl~~~~   71 (205)
T TIGR01470         4 FANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTL------LAE-QGGI-TWLA--RCF-D-ADILEGAF   71 (205)
T ss_pred             EEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH------HHH-cCCE-EEEe--CCC-C-HHHhCCcE
Confidence            356899999999999999999999999999999998765421000      000 0000 0100  011 1 34567788


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      +|+.+.. .++    +|.......+.-.++||+
T Consensus        72 lVi~at~-d~~----ln~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        72 LVIAATD-DEE----LNRRVAHAARARGVPVNV   99 (205)
T ss_pred             EEEECCC-CHH----HHHHHHHHHHHcCCEEEE
Confidence            8777643 222    345555555555677776

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.73  E-value=0.0023  Score=62.72  Aligned_cols=112  Identities=14%  Similarity=0.162  Sum_probs=64.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC-------CEEEEEcCCCcccccc-ccccchhhhcccccc--ccccccCCcCCHHHHh
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWASHSQV-SCQSSALAVKNGIID--DLVDEKGCHEDIFEFA  223 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G-------~~V~~~d~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell  223 (346)
                      .+|+|||.|.-|.++|..+...|       .+|..|.++....... .+.....+...+.+.  .+.+......++++++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            58999999999999999997554       7898887764310000 000000000000000  0111111236888999


Q ss_pred             hcCCEEEEeecCCccccCCCCHHHHc--cCCCCcEEEEcCCCCCCC
Q 019081          224 SKADVVVCCLSLNKQTAGIVNKSFLS--SMKKGSLLVNIARGGLLD  267 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~T~~li~~~~l~--~mk~gailIN~sRg~~vd  267 (346)
                      +.||+|++++|. ...+.++.+ .-.  .+++++++|+++-|=-.+
T Consensus        92 ~~aDiIvlAVPs-q~l~~vl~~-l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         92 EDADLLIFVIPH-QFLESVLSQ-IKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             hcCCEEEEEcCh-HHHHHHHHH-hccccccCCCCEEEEEeCCcccC
Confidence            999999999994 334433321 112  356688999998774433

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.69  E-value=0.0032  Score=51.53  Aligned_cols=96  Identities=20%  Similarity=0.231  Sum_probs=53.6

Q ss_pred             eEEEEe-cCHHHHHHHHHHccC-CCEEEEE-cCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          155 TVFILG-FGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       155 tvgIiG-~G~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++||+| .|.+|+.+++.+... ++++.++ +++..........       ...+...........+++  ..++|+|++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~DvV~~   71 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEA-------GPHLKGEVVLELEPEDFE--ELAVDIVFL   71 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHH-------CcccccccccccccCChh--hcCCCEEEE
Confidence            589999 599999999988874 8887776 4332111000000       000000000000112232  258999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      ++|.. .+...+. .....+++|.++|++|
T Consensus        72 ~~~~~-~~~~~~~-~~~~~~~~g~~viD~s   99 (122)
T smart00859       72 ALPHG-VSKEIAP-LLPKAAEAGVKVIDLS   99 (122)
T ss_pred             cCCcH-HHHHHHH-HHHhhhcCCCEEEECC
Confidence            99965 3333222 2345578999999997

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.68  E-value=0.0023  Score=62.98  Aligned_cols=100  Identities=16%  Similarity=0.246  Sum_probs=64.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      +++.|||+|.||+.+|..|..-| .+|++.||+..+..+.... ..    .+ +....-.......+.+++++.|+|+.+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~-~~----~~-v~~~~vD~~d~~al~~li~~~d~VIn~   75 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL-IG----GK-VEALQVDAADVDALVALIKDFDLVINA   75 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh-cc----cc-ceeEEecccChHHHHHHHhcCCEEEEe
Confidence            57899999999999999998888 8999999986542111000 00    00 000000001235688999999999999


Q ss_pred             ecCCccccCCCCHHHH-ccCCCCcEEEEcCCCCC
Q 019081          233 LSLNKQTAGIVNKSFL-SSMKKGSLLVNIARGGL  265 (346)
Q Consensus       233 lPlt~~T~~li~~~~l-~~mk~gailIN~sRg~~  265 (346)
                      +|..      ++...+ +.++.|.-.+++|-.+-
T Consensus        76 ~p~~------~~~~i~ka~i~~gv~yvDts~~~~  103 (389)
T COG1748          76 APPF------VDLTILKACIKTGVDYVDTSYYEE  103 (389)
T ss_pred             CCch------hhHHHHHHHHHhCCCEEEcccCCc
Confidence            9964      233444 33566777777765443

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.68  E-value=0.001  Score=60.92  Aligned_cols=116  Identities=24%  Similarity=0.285  Sum_probs=67.3

Q ss_pred             ccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccc------cchhh--------hc--cc
Q 019081          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ------SSALA--------VK--NG  204 (346)
Q Consensus       142 ~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~------~~~~~--------~~--~~  204 (346)
                      +|+......|..++|.|+|+|.+|..+|+.|...|+ +++.+|...-....-.+.      +.+..        .+  +.
T Consensus        10 ~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np   89 (228)
T cd00757          10 EIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP   89 (228)
T ss_pred             hcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC
Confidence            355444467899999999999999999999999998 688887643221110000      00000        00  00


Q ss_pred             cc-cccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          205 II-DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       205 ~~-~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      .. ...........++++++.++|+|+.++. +..++..+++...+   .+.-+|..+
T Consensus        90 ~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g  143 (228)
T cd00757          90 DVEIEAYNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA  143 (228)
T ss_pred             CCEEEEecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence            00 0000000012345678888999998876 56677777665543   345566664

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.67  E-value=0.0042  Score=59.80  Aligned_cols=127  Identities=13%  Similarity=0.079  Sum_probs=73.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhcccccccccc--ccC-CcCCHHHHhhcCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKG-CHEDIFEFASKAD  227 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~l~ell~~aD  227 (346)
                      ..++|+|||.|.+|..+|..+...| .++..+|++........ .+..+.      .....  ... ...+++ .+++||
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~-lDl~~~------~~~~~~~~~i~~~~d~~-~l~~AD   75 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKA-LDLKHF------STLVGSNINILGTNNYE-DIKDSD   75 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHH-HHHhhh------ccccCCCeEEEeCCCHH-HhCCCC
Confidence            4679999999999999999888777 68999998654321110 000000      00000  000 124666 679999


Q ss_pred             EEEEee--cCCcc-cc--------CCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH--hCCCeEEE--Ee
Q 019081          228 VVVCCL--SLNKQ-TA--------GIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE--CGHLGGLG--ID  286 (346)
Q Consensus       228 iV~~~l--Plt~~-T~--------~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~--~g~i~ga~--lD  286 (346)
                      +|+++.  |..+. ++        .++-  .+.+....|.+++||++-..=+-...+.+.-.  ..++.|.+  ||
T Consensus        76 iVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         76 VVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence            999998  43331 11        1110  12344456889999996544344444544432  45677666  66

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.66  E-value=0.01  Score=56.36  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~  186 (346)
                      .+.+|++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            47789999999999999999999999996 99999875

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.62  E-value=0.056  Score=54.23  Aligned_cols=166  Identities=17%  Similarity=0.119  Sum_probs=91.1

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEE--------EcCCCccccccccccchhhhccccc-ccccccc-C-Cc
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA--------TKRSWASHSQVSCQSSALAVKNGII-DDLVDEK-G-CH  216 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~--------~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~  216 (346)
                      +.+|.|+||.|=|+|++|+..|+.|..+|++|++        ||+..-..... .....+...++-+ ......+ + ..
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l-~~l~~~k~~~~~~~~~~~~~~~ga~~  301 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKI-DYMLELRASGNDIVAPYAEKFPGSTF  301 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHH-HHHHHHHHhcCccHHHHHhcCCCCEE
Confidence            4579999999999999999999999999999999        66442221000 0000000000000 0000011 1 11


Q ss_pred             CCHHHHh-hcCCEEEEeecCCccccCCCCHHHHccCC-C-CcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCC
Q 019081          217 EDIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK-K-GSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF  293 (346)
Q Consensus       217 ~~l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk-~-gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl  293 (346)
                      .+-++++ ..|||++-|.     +.+.|+.+...++. . =.+++--+-| .+..++ .+.|++..|.-+ =|+      
T Consensus       302 i~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~~v-PD~------  367 (445)
T PRK14030        302 FAGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQLFA-PGK------  367 (445)
T ss_pred             cCCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCEEe-Ccc------
Confidence            1223333 4699888764     67789998877773 2 3455666677 455543 477777776533 222      


Q ss_pred             CCCCCCCCCCceEE--------ccCCCCCcHHHHHHHHHHHHHHHHHH
Q 019081          294 DPNDPILKFKNVLI--------TPHVGGVTEHSYRSMAKVVGDVALQL  333 (346)
Q Consensus       294 ~~~~pL~~~~nvii--------TPH~a~~t~~~~~~~~~~~~~ni~~~  333 (346)
                           +-+.--|++        .-|.-+..++..+++.+.+.+...+.
T Consensus       368 -----~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~m~~~~~~v  410 (445)
T PRK14030        368 -----AVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIMSGIHEQC  410 (445)
T ss_pred             -----eecCCCeeeehhhhhccccccCcCHHHHHHHHHHHHHHHHHHH
Confidence                 112222222        23445555666666666555555543

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.62  E-value=0.0025  Score=53.77  Aligned_cols=86  Identities=22%  Similarity=0.344  Sum_probs=49.5

Q ss_pred             EEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecC
Q 019081          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL  235 (346)
Q Consensus       156 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPl  235 (346)
                      +-|+|.|.+++++++.++.+|++|+++|++...                                  ++.++-+. +.+.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~----------------------------------~~~~~~~~-~~~~   45 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER----------------------------------FPEADEVI-CIPP   45 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-----------------------------------TTSSEEE-CSHH
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc----------------------------------cCCCCccE-ecCh
Confidence            469999999999999999999999999976321                                  01222221 1111


Q ss_pred             CccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEE
Q 019081          236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGI  285 (346)
Q Consensus       236 t~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~l  285 (346)
                       ++   +  .+.+ .+.++.++| ++++.-.|.+.|..+|++ ...+.|+
T Consensus        46 -~~---~--~~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~   86 (136)
T PF13478_consen   46 -DD---I--LEDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL   86 (136)
T ss_dssp             -HH---H--HHHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred             -HH---H--Hhcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence             00   0  0111 355666666 788888888888888887 4444443

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.62  E-value=0.0051  Score=58.76  Aligned_cols=90  Identities=12%  Similarity=0.130  Sum_probs=62.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcC
Q 019081          153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  226 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  226 (346)
                      -+++||||.|..|+.-++.+.. +.. +|.+|+|+..+......             .+....+    ...+.++++++|
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~-------------~~~~~~~~~v~~~~~~~eav~~a  183 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAE-------------RFSKEFGVDIRPVDNAEAALRDA  183 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHH-------------HHHHhcCCcEEEeCCHHHHHhcC
Confidence            4699999999999988877654 455 69999998755321110             1111111    236899999999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      |+|+.+.|.   +..+++.+.   +|||+.++-++
T Consensus       184 DIV~taT~s---~~P~~~~~~---l~pg~hV~aiG  212 (301)
T PRK06407        184 DTITSITNS---DTPIFNRKY---LGDEYHVNLAG  212 (301)
T ss_pred             CEEEEecCC---CCcEecHHH---cCCCceEEecC
Confidence            999998764   456787775   47887766655

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.60  E-value=0.0058  Score=57.03  Aligned_cols=103  Identities=17%  Similarity=0.223  Sum_probs=63.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccC---CCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHH-hhcCCE
Q 019081          154 KTVFILGFGNIGVELAKRLRPF---GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~---G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDi  228 (346)
                      .+|||||||.||+.+++.+..-   ++++.+ +++.....                 ..+........+++++ ....|+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~-----------------~~~~~~~~~~~~l~~ll~~~~Dl   65 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP-----------------PALAGRVALLDGLPGLLAWRPDL   65 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHH-----------------HHhhccCcccCCHHHHhhcCCCE
Confidence            5899999999999999988642   366544 55543221                 0111111134679997 578999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCC---HHHHHHHHHhC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD---YEAIAHYLECG  278 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd---~~aL~~aL~~g  278 (346)
                      |+=|.....     +-+--..-++.|.=++=.|-|.+-|   ++.|.++.+++
T Consensus        66 VVE~A~~~a-----v~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~  113 (267)
T PRK13301         66 VVEAAGQQA-----IAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG  113 (267)
T ss_pred             EEECCCHHH-----HHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence            988775321     1111222256677777788888887   45666655553

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.59  E-value=0.056  Score=51.78  Aligned_cols=65  Identities=25%  Similarity=0.268  Sum_probs=48.2

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      .+.|++|+++|=   +++.++++..+..||++|....|..-...                 . ........++++.+++|
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~-----------------~-~~~~~~~~d~~ea~~~a  214 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPE-----------------G-MPEYGVHTDLDEVIEDA  214 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcc-----------------c-ccceEEECCHHHHhCCC
Confidence            378999999998   58999999999999999998876322100                 0 00011246899999999


Q ss_pred             CEEEEe
Q 019081          227 DVVVCC  232 (346)
Q Consensus       227 DiV~~~  232 (346)
                      |+|...
T Consensus       215 Dvvyt~  220 (305)
T PRK00856        215 DVVMML  220 (305)
T ss_pred             CEEEEC
Confidence            999773

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.56  E-value=0.0027  Score=58.84  Aligned_cols=45  Identities=20%  Similarity=0.338  Sum_probs=37.0

Q ss_pred             ccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       142 ~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      .|+......|..++|+|+|+|.+|..+++.|...|. ++..+|...
T Consensus        21 ~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         21 GFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             hcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            455433467999999999999999999999998887 688887643

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.56  E-value=0.0024  Score=62.09  Aligned_cols=104  Identities=21%  Similarity=0.215  Sum_probs=62.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc---cccCCcCCHHHHhhcCCEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV---DEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ell~~aDiV~  230 (346)
                      .+|+|||.|.+|..+|..|...| .|+.|.++..... .... ...  ......+..   .......++.+.++.+|+|+
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~-~i~~-~~~--~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi   82 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETAD-DIND-NHR--NSRYLGNDVVLSDTLRATTDFAEAANCADVVV   82 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHH-HHHh-cCC--CcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence            57999999999999999999888 6777766432210 0000 000  000000000   00012357888899999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +++|. ..++..+. +.-..++++..+|++.-|=
T Consensus        83 lavps-~~~~~vl~-~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         83 MGVPS-HGFRGVLT-ELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             EEeCH-HHHHHHHH-HHHhhcCCCCEEEEEEeCC
Confidence            99993 34444432 2223467888899998763

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.54  E-value=0.0051  Score=59.17  Aligned_cols=106  Identities=18%  Similarity=0.244  Sum_probs=60.8

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh-hcCCEEEEee
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCCL  233 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~~~l  233 (346)
                      +++|||.|.+|..+|..|...|.+|..++|+......-...-....+..+  ...........++++.+ ..+|+|++++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~Dliiiav   79 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPT--CHLPDNISVKSAIDEVLSDNATCIILAV   79 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCC--CcCCCCeEEeCCHHHHHhCCCCEEEEEe
Confidence            69999999999999999999999999999864211000000000000000  00000000124666766 5899999999


Q ss_pred             cCCccccCCCCHHHHc-cCCCCcEEEEcCCCC
Q 019081          234 SLNKQTAGIVNKSFLS-SMKKGSLLVNIARGG  264 (346)
Q Consensus       234 Plt~~T~~li~~~~l~-~mk~gailIN~sRg~  264 (346)
                      |. ..++.++.. .-. .++++..+|...-|=
T Consensus        80 ks-~~~~~~l~~-l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         80 PT-QQLRTICQQ-LQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             CH-HHHHHHHHH-HHHhcCCCCCEEEEEEcCe
Confidence            95 344444332 222 456777777776553

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.50  E-value=0.0024  Score=62.05  Aligned_cols=44  Identities=32%  Similarity=0.495  Sum_probs=37.2

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      |+......|..++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus        14 ~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         14 IGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            44333467899999999999999999999999999 899999753

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.48  E-value=0.0053  Score=60.32  Aligned_cols=36  Identities=36%  Similarity=0.409  Sum_probs=32.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .++|||||.|..|+.+++.++.+|++|+++|+....
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~   37 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS   37 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            378999999999999999999999999999986543

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.46  E-value=0.0025  Score=59.56  Aligned_cols=126  Identities=18%  Similarity=0.231  Sum_probs=74.3

Q ss_pred             EEEEec-CHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhcccccccc-ccccCCcCCHHHHhhcCCEE
Q 019081          156 VFILGF-GNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       156 vgIiG~-G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV  229 (346)
                      |+|||. |.+|..+|..+...|    -+|..||.+.............+.      ... ........++.+.+++||+|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~------~~~~~~~i~~~~d~~~~~~~aDiV   74 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAV------EPLADIKVSITDDPYEAFKDADVV   74 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhh------hhccCcEEEECCchHHHhCCCCEE
Confidence            589999 999999999987667    689999987643211111000000      000 00001235678889999999


Q ss_pred             EEeecCCccccCC------------CC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHH--HHhCCCeEEE-EecC
Q 019081          230 VCCLSLNKQTAGI------------VN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG-IDVA  288 (346)
Q Consensus       230 ~~~lPlt~~T~~l------------i~--~~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~-lDV~  288 (346)
                      +++.-. +...++            +.  .+.+++..|++++||++-.-=+-...+.+.  +...++-|.+ +|..
T Consensus        75 v~t~~~-~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~  149 (263)
T cd00650          75 IITAGV-GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI  149 (263)
T ss_pred             EECCCC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence            996521 111121            10  123444558999999963322334445444  4567888988 8875

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.45  E-value=0.008  Score=59.13  Aligned_cols=111  Identities=23%  Similarity=0.335  Sum_probs=70.8

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhc-----cccccccccccC-CcCCHHH
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK-----NGIIDDLVDEKG-CHEDIFE  221 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~l~e  221 (346)
                      +.+|.|+||.|=|+|++|+..|+.+...|.+|++++.+...-..+    .++.+.     .+-........+ ...+-++
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~----~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e  277 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDE----DGLDVEALLELKERRGSVAEYAGAEYITNEE  277 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecC----CCCCHHHHHHHhhhhhhHHhhcCceEccccc
Confidence            345999999999999999999999998899999988665411000    000000     000000111111 1222355


Q ss_pred             Hh-hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH
Q 019081          222 FA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY  268 (346)
Q Consensus       222 ll-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~  268 (346)
                      ++ ..|||++-|     .+.+.|+.+...++|-. +++--+-|++-.+
T Consensus       278 ~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~e  319 (411)
T COG0334         278 LLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTPE  319 (411)
T ss_pred             cccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCHH
Confidence            55 468988765     46778999988888866 7888888887533

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.45  E-value=0.12  Score=48.72  Aligned_cols=187  Identities=18%  Similarity=0.231  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccC----CC-------EEEEEcC
Q 019081          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  184 (346)
Q Consensus       116 vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~----G~-------~V~~~d~  184 (346)
                      +|=-+++-+|+.+|-.                +..|.+.++.|+|.|.-|-.+|+.+...    |.       +++.+|+
T Consensus         4 Ta~V~lAgllnAlk~~----------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~   67 (279)
T cd05312           4 TAAVALAGLLAALRIT----------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDS   67 (279)
T ss_pred             HHHHHHHHHHHHHHHh----------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcC
Confidence            4556677777777642                5778999999999999999999998776    87       7899998


Q ss_pred             CCccccccccccchhhhccccccccccccC--CcCCHHHHhh--cCCEEEEeecCCccccCCCCHHHHccCC---CCcEE
Q 019081          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KADVVVCCLSLNKQTAGIVNKSFLSSMK---KGSLL  257 (346)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aDiV~~~lPlt~~T~~li~~~~l~~mk---~gail  257 (346)
                      ..--...... ...+  +    ..+.....  ...+|.|+++  ++|+++-+-    ...|+|+++.++.|.   +.+++
T Consensus        68 ~Gll~~~r~~-l~~~--~----~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PII  136 (279)
T cd05312          68 KGLLTKDRKD-LTPF--K----KPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPII  136 (279)
T ss_pred             CCeEeCCCCc-chHH--H----HHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEE
Confidence            6421100000 0000  0    01111111  2358999999  889998742    234799999999998   89999


Q ss_pred             EEcCCCCCCCHHHHHHHHH--hCC-CeEEEEecCCCCCCCC---CC---CCCCCCceEEccCCCCC-----cHHHHHHHH
Q 019081          258 VNIARGGLLDYEAIAHYLE--CGH-LGGLGIDVAWTEPFDP---ND---PILKFKNVLITPHVGGV-----TEHSYRSMA  323 (346)
Q Consensus       258 IN~sRg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EPl~~---~~---pL~~~~nviiTPH~a~~-----t~~~~~~~~  323 (346)
                      .=.|....-.|-.=.+|.+  +|+ |.+.|.      |+++   +.   .-=..-|+++-|=++-.     .......|.
T Consensus       137 FaLSNPt~~~E~~pe~a~~~t~G~ai~ATGs------Pf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~  210 (279)
T cd05312         137 FALSNPTSKAECTAEDAYKWTDGRALFASGS------PFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMF  210 (279)
T ss_pred             EECCCcCCccccCHHHHHHhhcCCEEEEeCC------CCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHH
Confidence            9999887644444444444  355 555442      2222   11   11246789999977632     122235566


Q ss_pred             HHHHHHHHHHHc
Q 019081          324 KVVGDVALQLHA  335 (346)
Q Consensus       324 ~~~~~ni~~~~~  335 (346)
                      ..+++.|-.+..
T Consensus       211 ~aAA~aLA~~~~  222 (279)
T cd05312         211 LAAAEALASLVT  222 (279)
T ss_pred             HHHHHHHHHhCC
Confidence            666666665543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.39  E-value=0.0079  Score=58.57  Aligned_cols=95  Identities=14%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      -++++|||.|..++.-++.+. -+.. +|.+|+|+..+........          ....-......+.++++++||+|+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~----------~~~~~~v~~~~~~~~av~~ADIIv  198 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNL----------AGPGLRIVACRSVAEAVEGADIIT  198 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHH----------HhcCCcEEEeCCHHHHHhcCCEEE
Confidence            368999999999988877554 3444 6999999865421111000          000000002368999999999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      .+.|.+ ++.-++..+.   +|||+.+.-++
T Consensus       199 taT~S~-~~~Pvl~~~~---lkpG~hV~aIG  225 (346)
T PRK07589        199 TVTADK-TNATILTDDM---VEPGMHINAVG  225 (346)
T ss_pred             EecCCC-CCCceecHHH---cCCCcEEEecC
Confidence            998743 2235677665   59999877665

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.37  E-value=0.0066  Score=52.40  Aligned_cols=40  Identities=25%  Similarity=0.228  Sum_probs=35.7

Q ss_pred             CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ..-+|.|++|.|||.|.+|...++.|...|++|+++++..
T Consensus         7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~   46 (157)
T PRK06719          7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI   46 (157)
T ss_pred             eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence            3468999999999999999999999999999999997543

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.32  E-value=0.083  Score=49.11  Aligned_cols=192  Identities=13%  Similarity=0.094  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-----------EEEEEcC
Q 019081          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR  184 (346)
Q Consensus       116 vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-----------~V~~~d~  184 (346)
                      +|=-+++-+++.+|-                .+..|.+.++.|+|.|..|-.+|+.+...++           +++.+|+
T Consensus         4 TaaV~lAgllnAlk~----------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~   67 (254)
T cd00762           4 TASVAVAGLLAALKV----------------TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDR   67 (254)
T ss_pred             hHHHHHHHHHHHHHH----------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECC
Confidence            344567777777763                2567899999999999999999999987766           6888887


Q ss_pred             CCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCEEEEeecCCccccCCCCHHHHccCC---CCcEEEE
Q 019081          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVVVCCLSLNKQTAGIVNKSFLSSMK---KGSLLVN  259 (346)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~~~lPlt~~T~~li~~~~l~~mk---~gailIN  259 (346)
                      ..--...... ...+.  . .+.+.........+|.|+++  +.|+++-..    ...|+|.++.++.|.   +..++.=
T Consensus        68 ~Gll~~~r~~-l~~~~--~-~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa  139 (254)
T cd00762          68 KGLLVKNRKE-TCPNE--Y-HLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA  139 (254)
T ss_pred             CCeEeCCCCc-cCHHH--H-HHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence            5421100000 00000  0 00001111113368999999  999998742    335899999999999   8999999


Q ss_pred             cCCCCCCCHHHHHHHHHh--C-CCeEEEEecCCCCCCCCCC---CCCCCCceEEccCCCCCc-----HHHHHHHHHHHHH
Q 019081          260 IARGGLLDYEAIAHYLEC--G-HLGGLGIDVAWTEPFDPND---PILKFKNVLITPHVGGVT-----EHSYRSMAKVVGD  328 (346)
Q Consensus       260 ~sRg~~vd~~aL~~aL~~--g-~i~ga~lDV~~~EPl~~~~---pL~~~~nviiTPH~a~~t-----~~~~~~~~~~~~~  328 (346)
                      .|....-.|-.=-+|.+-  | .|.+.|--.+..+-   +.   ..=..-|+++-|=++-..     ......|...+++
T Consensus       140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~---~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~  216 (254)
T cd00762         140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL---NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAE  216 (254)
T ss_pred             CCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc---CCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHH
Confidence            998877444333334443  4 45444332221111   11   112567999999776321     1122455555555


Q ss_pred             HHHHHH
Q 019081          329 VALQLH  334 (346)
Q Consensus       329 ni~~~~  334 (346)
                      .|-.+.
T Consensus       217 aLA~~v  222 (254)
T cd00762         217 AIASSV  222 (254)
T ss_pred             HHHhhC
Confidence            555443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK12862 malic enzyme; Reviewed

Probab=96.26  E-value=0.1  Score=55.97  Aligned_cols=168  Identities=17%  Similarity=0.132  Sum_probs=110.2

Q ss_pred             CcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-
Q 019081           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (346)
Q Consensus        99 gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-  177 (346)
                      +|+|.|.- .     ..+|=-+++.+++.+|-                .++.+...++.|.|.|.-|-.+|+.+...|. 
T Consensus       161 ~ip~f~DD-~-----~GTa~v~la~l~~a~~~----------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  218 (763)
T PRK12862        161 KIPVFHDD-Q-----HGTAIIVAAALLNGLKL----------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVK  218 (763)
T ss_pred             CCceEecC-c-----ccHHHHHHHHHHHHHHH----------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence            58888873 2     34566677777777764                2578999999999999999999999999998 


Q ss_pred             --EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCc
Q 019081          178 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS  255 (346)
Q Consensus       178 --~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~ga  255 (346)
                        +++.+|+..--..........+  +    ..++.. ....+|.|+++.+|+++-.-     +.|+++++.++.|.+.+
T Consensus       219 ~~~i~~~D~~G~i~~~r~~~l~~~--~----~~~a~~-~~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~p  286 (763)
T PRK12862        219 RENIWVTDIKGVVYEGRTELMDPW--K----ARYAQK-TDARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRP  286 (763)
T ss_pred             cccEEEEcCCCeeeCCCCccccHH--H----HHHhhh-cccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence              7999997542110000000000  0    011111 12358999999999988642     25899999999999999


Q ss_pred             EEEEcCCCCCCCHHHHHHHHHh--CCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCC
Q 019081          256 LLVNIARGGLLDYEAIAHYLEC--GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG  312 (346)
Q Consensus       256 ilIN~sRg~~vd~~aL~~aL~~--g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a  312 (346)
                      ++.=.|....-  -.-.+|.+-  |.|.+-|-     .    +.| =..-|+++-|=++
T Consensus       287 iifalsNP~~E--~~p~~a~~~~~~~i~atGr-----s----~~p-~Q~NN~~~FPgi~  333 (763)
T PRK12862        287 LIFALANPTPE--ILPEEARAVRPDAIIATGR-----S----DYP-NQVNNVLCFPYIF  333 (763)
T ss_pred             EEEeCCCCccc--CCHHHHHHhcCCEEEEECC-----c----CCC-Ccccceeeccchh
Confidence            99999987752  122223333  45555441     1    111 1357899999765

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.25  E-value=0.081  Score=56.44  Aligned_cols=171  Identities=17%  Similarity=0.152  Sum_probs=109.7

Q ss_pred             CCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC
Q 019081           98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV  177 (346)
Q Consensus        98 ~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~  177 (346)
                      ..|+|.|.- .     ..+|=-+++.+++.+|-                .+..+...++.|.|.|.-|-.+|+.+...|.
T Consensus       152 ~~ip~f~DD-~-----~GTa~v~lA~l~na~~~----------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~  209 (752)
T PRK07232        152 MDIPVFHDD-Q-----HGTAIISAAALLNALEL----------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGA  209 (752)
T ss_pred             cCCCeeccc-c-----chHHHHHHHHHHHHHHH----------------hCCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence            368888763 2     34566677777777764                2578899999999999999999999998898


Q ss_pred             ---EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCC
Q 019081          178 ---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKG  254 (346)
Q Consensus       178 ---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~g  254 (346)
                         +++.+|+..--..........+  +    ..++.. ....+|.|+++.+|+++-.-     +.|+++++.++.|.+.
T Consensus       210 ~~~~i~~~D~~G~i~~~r~~~~~~~--k----~~~a~~-~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~v~~M~~~  277 (752)
T PRK07232        210 KKENIIVCDSKGVIYKGRTEGMDEW--K----AAYAVD-TDARTLAEAIEGADVFLGLS-----AAGVLTPEMVKSMADN  277 (752)
T ss_pred             CcccEEEEcCCCeecCCCcccccHH--H----HHHhcc-CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccC
Confidence               7999997642110000000000  0    011111 12358999999999887641     2589999999999999


Q ss_pred             cEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCC
Q 019081          255 SLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG  312 (346)
Q Consensus       255 ailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a  312 (346)
                      +++.=.|....--..+.......|.|.+-|-     .    +.| =..-|+++-|=++
T Consensus       278 piifalsNP~~E~~p~~a~~~~~~~i~atGr-----s----~~p-nQ~NN~~~FPgi~  325 (752)
T PRK07232        278 PIIFALANPDPEITPEEAKAVRPDAIIATGR-----S----DYP-NQVNNVLCFPYIF  325 (752)
T ss_pred             CEEEecCCCCccCCHHHHHHhcCCEEEEECC-----c----CCC-Ccccceeecchhh
Confidence            9999999887522222222222245555441     1    111 1356788888655

>PRK12861 malic enzyme; Reviewed

Probab=96.25  E-value=0.091  Score=56.09  Aligned_cols=191  Identities=18%  Similarity=0.150  Sum_probs=118.2

Q ss_pred             CcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-
Q 019081           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (346)
Q Consensus        99 gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-  177 (346)
                      .|+|.|.- .     ..+|=-+++.+++.+|-                .++.|...++.|.|.|.-|..+|+.+...|. 
T Consensus       157 ~ipvf~DD-~-----qGTa~v~lA~llnal~~----------------~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~  214 (764)
T PRK12861        157 KIPVFHDD-Q-----HGTAITVSAAFINGLKV----------------VGKSIKEVKVVTSGAGAAALACLDLLVDLGLP  214 (764)
T ss_pred             CCCeeccc-c-----chHHHHHHHHHHHHHHH----------------hCCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence            78888863 2     34566677778877764                2578999999999999999999999999998 


Q ss_pred             --EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCc
Q 019081          178 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS  255 (346)
Q Consensus       178 --~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~ga  255 (346)
                        +++.+|+..--..........  ++    ..++.. ....+|.|+++.+|+++-.-     +.|+++++.++.|.+.+
T Consensus       215 ~~~i~~~D~~Gli~~~r~~~l~~--~k----~~~a~~-~~~~~L~eai~~advliG~S-----~~g~ft~e~v~~Ma~~P  282 (764)
T PRK12861        215 VENIWVTDIEGVVYRGRTTLMDP--DK----ERFAQE-TDARTLAEVIGGADVFLGLS-----AGGVLKAEMLKAMAARP  282 (764)
T ss_pred             hhhEEEEcCCCeeeCCCcccCCH--HH----HHHHhh-cCCCCHHHHHhcCCEEEEcC-----CCCCCCHHHHHHhccCC
Confidence              799999654211000000000  00    011111 12368999999999886642     25899999999999999


Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhCC-CeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCC-----cHHHHHHHHHHHHHH
Q 019081          256 LLVNIARGGLLDYEAIAHYLECGH-LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGV-----TEHSYRSMAKVVGDV  329 (346)
Q Consensus       256 ilIN~sRg~~vd~~aL~~aL~~g~-i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~-----t~~~~~~~~~~~~~n  329 (346)
                      ++.=.|....--..+.+.. -.|+ |.+-|-      .   +.| =..-|+++-|=++-.     .....+.|...+++.
T Consensus       283 IIFaLsNPtpE~~pe~a~~-~~g~aivaTGr------s---~~p-nQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~a  351 (764)
T PRK12861        283 LILALANPTPEIFPELAHA-TRDDVVIATGR------S---DYP-NQVNNVLCFPYIFRGALDVGATTITREMEIAAVHA  351 (764)
T ss_pred             EEEECCCCCccCCHHHHHh-cCCCEEEEeCC------c---CCC-CccceeeecchhhHHHHHcCCccCCHHHHHHHHHH
Confidence            9999998775222222222 2244 433211      0   111 135789999976532     112224455555555


Q ss_pred             HHHHH
Q 019081          330 ALQLH  334 (346)
Q Consensus       330 i~~~~  334 (346)
                      |-.+.
T Consensus       352 lA~~~  356 (764)
T PRK12861        352 IAGLA  356 (764)
T ss_pred             HHhhC
Confidence            54443

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.25  E-value=0.013  Score=56.02  Aligned_cols=105  Identities=17%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|||.|.+|+.+|..|...|  .+|..+|++.................     ..........+. +.+++||+|++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~-----~~~~~~i~~~~~-~~l~~aDIVIi   74 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF-----LPSPVKIKAGDY-SDCKDADIVVI   74 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc-----cCCCeEEEcCCH-HHhCCCCEEEE
Confidence            48999999999999999998888  47999998765421111000000000     000000011234 44789999999


Q ss_pred             eecCCccccCCC-------C-------HHHHccCCCCcEEEEcCCCCCCC
Q 019081          232 CLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIARGGLLD  267 (346)
Q Consensus       232 ~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~sRg~~vd  267 (346)
                      +... +...++-       |       .+.+.+..|.+++|+++  ..+|
T Consensus        75 tag~-~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d  121 (306)
T cd05291          75 TAGA-PQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVD  121 (306)
T ss_pred             ccCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHH
Confidence            8864 2222321       1       12344556789999997  4444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.24  E-value=0.0084  Score=60.54  Aligned_cols=118  Identities=16%  Similarity=0.086  Sum_probs=66.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      -+.+++++|+|+|..|+++|+.|+..|++|.++|.+..........  .  ..    .....- .......+.+.++|+|
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~--~--l~----~~gi~~-~~~~~~~~~~~~~dlV   81 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSN--E--LK----ELGVKL-VLGENYLDKLDGFDVI   81 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHH--H--HH----hCCCEE-EeCCCChHHhccCCEE
Confidence            3568899999999999999999999999999999764321000000  0  00    000000 0011223556789998


Q ss_pred             EEeecCCccccCC-----------CCHH-HHccC-CCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          230 VCCLSLNKQTAGI-----------VNKS-FLSSM-KKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       230 ~~~lPlt~~T~~l-----------i~~~-~l~~m-k~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      ++. |.-+.+...           +++- .+.+. +...+-|-=+.|..-..+-|...|+.
T Consensus        82 V~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~  141 (458)
T PRK01710         82 FKT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE  141 (458)
T ss_pred             EEC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            886 544333222           2221 22222 32344455567777666666666764

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.23  E-value=0.026  Score=56.13  Aligned_cols=90  Identities=23%  Similarity=0.303  Sum_probs=62.6

Q ss_pred             ccCCCeEEEEec----------CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCH
Q 019081          150 TLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI  219 (346)
Q Consensus       150 ~l~g~tvgIiG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  219 (346)
                      .+.|++|+|+|+          ..-...+++.|...|++|.+|||......                   ........++
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-------------------~~~~~~~~~~  370 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-------------------VKGLPLIDDL  370 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-------------------hhhcccCCCH
Confidence            689999999998          45678999999999999999998643310                   0001123578


Q ss_pred             HHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          220 FEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       220 ~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      ++.++.||+|+++.+..+ -+. ++-+.++.+-...++|++
T Consensus       371 ~~~~~~ad~~v~~t~~~~-~~~-~~~~~~~~~~~~~~v~D~  409 (411)
T TIGR03026       371 EEALKGADALVILTDHDE-FKD-LDLEKIKDLMKGKVVVDT  409 (411)
T ss_pred             HHHHhCCCEEEEecCCHH-Hhc-cCHHHHHHhcCCCEEEeC
Confidence            899999999999987432 222 355555443335578775

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.19  E-value=0.0045  Score=56.60  Aligned_cols=75  Identities=19%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHH-hhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF-ASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el-l~~aDiV~~  231 (346)
                      +++.|+|+|.+|..+|+.|...|++|+.+|+..............        .......+ ....|.++ +.++|+++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~--------~~~v~gd~t~~~~L~~agi~~aD~vva   72 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELD--------THVVIGDATDEDVLEEAGIDDADAVVA   72 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcc--------eEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence            578999999999999999999999999999876542110000000        00000001 12345555 688999999


Q ss_pred             eecCC
Q 019081          232 CLSLN  236 (346)
Q Consensus       232 ~lPlt  236 (346)
                      .....
T Consensus        73 ~t~~d   77 (225)
T COG0569          73 ATGND   77 (225)
T ss_pred             eeCCC
Confidence            88753

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=96.16  E-value=0.083  Score=51.07  Aligned_cols=163  Identities=14%  Similarity=0.218  Sum_probs=114.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc--ccCCcCCHHHHh---hcCCE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFA---SKADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell---~~aDi  228 (346)
                      ..+|+||++-||+.++-.....|+.|.+|+|+..+..+..+             ....  ......+++++.   +.--.
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~fla-------------neak~~~i~ga~S~ed~v~klk~PR~   73 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLA-------------NEAKGTKIIGAYSLEDFVSKLKKPRV   73 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHH-------------HhhcCCcccCCCCHHHHHHhcCCCcE
Confidence            36899999999999999999999999999998654211100             0011  011345777764   55677


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEc
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT  308 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiT  308 (346)
                      |++.+-.......+| ++....|.+|-++|+-+-...-|+..=.+.|...-|...+.-|-..|-=.-..|-+        
T Consensus        74 iillvkAG~pVD~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl--------  144 (487)
T KOG2653|consen   74 IILLVKAGAPVDQFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL--------  144 (487)
T ss_pred             EEEEeeCCCcHHHHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc--------
Confidence            888776554444444 45566789999999999999999999999999999888999998777422222221        


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 019081          309 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT  340 (346)
Q Consensus       309 PH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~  340 (346)
                        +-|-+.++|..+..++.+-....-.|+|..
T Consensus       145 --MpGg~~~Awp~ik~ifq~iaakv~~~epCc  174 (487)
T KOG2653|consen  145 --MPGGSKEAWPHIKDIFQKIAAKVSDGEPCC  174 (487)
T ss_pred             --CCCCChHHHHHHHHHHHHHHHHhcCCCCCe
Confidence              226678888888776666544455666653

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.09  E-value=0.017  Score=53.81  Aligned_cols=63  Identities=21%  Similarity=0.303  Sum_probs=44.5

Q ss_pred             CeEEEEec-CHHHHHHHHHHcc-CCCEEEE-EcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081          154 KTVFILGF-GNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  228 (346)
                      .+|+|+|+ |.||+.+++.+.. -++++.+ +|+......                 .. ...+  ...+++++++.+|+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~-----------------~~-~~~~i~~~~dl~~ll~~~Dv   63 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV-----------------GQ-GALGVAITDDLEAVLADADV   63 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-----------------cc-CCCCccccCCHHHhccCCCE
Confidence            37999998 9999999998875 4788765 676543210                 00 1111  34688999989999


Q ss_pred             EEEeec
Q 019081          229 VVCCLS  234 (346)
Q Consensus       229 V~~~lP  234 (346)
                      |+.++|
T Consensus        64 Vid~t~   69 (257)
T PRK00048         64 LIDFTT   69 (257)
T ss_pred             EEECCC
Confidence            997775

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.04  E-value=0.055  Score=51.55  Aligned_cols=104  Identities=13%  Similarity=0.136  Sum_probs=70.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  229 (346)
                      .|++++|||-=.=-..++++|...|++|..+.-....                    . ...+  ...+.++++++||+|
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~--------------------~-~~~g~~~~~~~~~~~~~ad~i   59 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD--------------------H-GFTGATKSSSLEEALSDVDVI   59 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc--------------------c-ccCCceeeccHHHHhccCCEE
Confidence            3789999999999999999999999999875321111                    0 0001  123567889999999


Q ss_pred             EEeecCCcccc---C-------CCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          230 VCCLSLNKQTA---G-------IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       230 ~~~lPlt~~T~---~-------li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ++-+|.+.+..   .       -++.+.+++||+|..++ ++.+.   .. +-+.+++..|.
T Consensus        60 i~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~  116 (296)
T PRK08306         60 ILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRK  116 (296)
T ss_pred             EECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCe
Confidence            99988754321   1       13678999999998544 33332   22 33556677775

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.02  E-value=0.12  Score=51.96  Aligned_cols=128  Identities=20%  Similarity=0.182  Sum_probs=71.4

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEE-EcCCCcc---cccccccc-chhhhcc---cccccccccc-C-CcC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWAS---HSQVSCQS-SALAVKN---GIIDDLVDEK-G-CHE  217 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~~~~~---~~~~~~~~-~~~~~~~---~~~~~~~~~~-~-~~~  217 (346)
                      +.+|.|+||.|=|+|++|+..|+.|..+|++|++ .|.+..-   .--..... .-...++   +-+.+..... + ...
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            4679999999999999999999999999999994 4443100   00000000 0000000   0001111100 0 111


Q ss_pred             CHHHHh-hcCCEEEEeecCCccccCCCCHHHHccC-CCCcEEEEc-CCCCCCCHHHHHHHHHhCCCeE
Q 019081          218 DIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNI-ARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       218 ~l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~m-k~gailIN~-sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      +-++++ -.|||++-|.     |.+.|+.+....+ +.++.+|-- +-+++ ..+ -.+.|++..|..
T Consensus       312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~~  372 (454)
T PTZ00079        312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVIF  372 (454)
T ss_pred             CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcEE
Confidence            122222 4689888764     6778998887766 555655555 55554 443 446777776653

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.00  E-value=0.13  Score=49.29  Aligned_cols=99  Identities=18%  Similarity=0.205  Sum_probs=62.2

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  224 (346)
                      .+.|++|+++|- +++.++++..+..+|++|....|..-..+...            .+......+    ...++++.++
T Consensus       149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~------------~~~~~~~~g~~~~~~~d~~~a~~  216 (304)
T PRK00779        149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEI------------VEKIAKETGASIEVTHDPKEAVK  216 (304)
T ss_pred             CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHH------------HHHHHHHcCCeEEEEcCHHHHhC
Confidence            378999999998 78999999999999999998876432211000            000011111    2468999999


Q ss_pred             cCCEEEEee----cCCc---c-----ccCCCCHHHHccCCCCcEEEEc
Q 019081          225 KADVVVCCL----SLNK---Q-----TAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       225 ~aDiV~~~l----Plt~---~-----T~~li~~~~l~~mk~gailIN~  260 (346)
                      ++|+|..-.    ....   +     -..-++++.++.+|++++|.-+
T Consensus       217 ~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp  264 (304)
T PRK00779        217 GADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC  264 (304)
T ss_pred             CCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence            999998741    1000   0     2334566666666666665544

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=95.99  E-value=0.025  Score=58.22  Aligned_cols=38  Identities=26%  Similarity=0.531  Sum_probs=34.6

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++.+|++.|+|.|.+|++++..|...|++|++++|+..
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e  413 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE  413 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            57789999999999999999999999999999998643

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.98  E-value=0.02  Score=57.11  Aligned_cols=35  Identities=31%  Similarity=0.475  Sum_probs=31.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+++.|||+|.+|.++|+.|+..|++|.++|++..
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            46899999999999999999999999999997643

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.97  E-value=0.0079  Score=58.83  Aligned_cols=46  Identities=22%  Similarity=0.320  Sum_probs=37.7

Q ss_pred             cccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       141 ~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      ..|+......|.+++|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus        16 ~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         16 GEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            3455444567999999999999999999999998888 688888654

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.95  E-value=0.016  Score=54.22  Aligned_cols=107  Identities=21%  Similarity=0.271  Sum_probs=56.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEEEE-cCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .+|||||+|.||+.+++.+... ++++.++ ++..... ...             ...........+++++-.+.|+|+.
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~-~~~-------------~~~~~~~~~~~d~~~l~~~~DvVve   67 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSID-AVR-------------RALGEAVRVVSSVDALPQRPDLVVE   67 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHH-HHh-------------hhhccCCeeeCCHHHhccCCCEEEE
Confidence            3799999999999999988765 5665443 3321110 000             0000001124577777456899999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH---HHHHHHHHhCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECGH  279 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g~  279 (346)
                      |.|....     -+-....++.|.-++-.+-|...|.   +.|.++.+++.
T Consensus        68 ~t~~~~~-----~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g  113 (265)
T PRK13303         68 CAGHAAL-----KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGG  113 (265)
T ss_pred             CCCHHHH-----HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCC
Confidence            9874321     1112222444444444444544443   34555555443

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.93  E-value=0.013  Score=52.55  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=24.3

Q ss_pred             eEEEEec-CHHHHHHHHHHccCCCEEE
Q 019081          155 TVFILGF-GNIGVELAKRLRPFGVKII  180 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G~~V~  180 (346)
                      +++|||. |.+|+.+++.++..|+.|.
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~   28 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY   28 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE
Confidence            7899999 9999999999999999875

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.91  E-value=0.12  Score=51.15  Aligned_cols=195  Identities=21%  Similarity=0.170  Sum_probs=117.7

Q ss_pred             hCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCC
Q 019081           97 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG  176 (346)
Q Consensus        97 ~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G  176 (346)
                      +..|+|.|.--      ..+|=.+++.+++.+|-                .|+.|+..+|.+.|.|.-|-++++.+++.|
T Consensus       165 ~~~IPvFhDDq------qGTaiv~lA~llnalk~----------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g  222 (432)
T COG0281         165 RMNIPVFHDDQ------QGTAIVTLAALLNALKL----------------TGKKLKDQKIVINGAGAAGIAIADLLVAAG  222 (432)
T ss_pred             cCCCCcccccc------cHHHHHHHHHHHHHHHH----------------hCCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence            45688887632      34666777777777764                378899999999999999999999999999


Q ss_pred             C---EEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCC
Q 019081          177 V---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK  252 (346)
Q Consensus       177 ~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk  252 (346)
                      +   +|+.+|+...-....... .....+    ..... ....... ++.+..+|+++-+-     +.|.+.++.++.|.
T Consensus       223 ~~~~~i~~~D~~G~l~~~r~~~-~~~~~k----~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma  291 (432)
T COG0281         223 VKEENIFVVDRKGLLYDGREDL-TMNQKK----YAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMA  291 (432)
T ss_pred             CCcccEEEEecCCcccCCCccc-ccchHH----HHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhc
Confidence            9   599999864221100000 000000    00110 1111121 45788999988752     22999999999999


Q ss_pred             CCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCc-----HHHHHHHHHHH
Q 019081          253 KGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT-----EHSYRSMAKVV  326 (346)
Q Consensus       253 ~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t-----~~~~~~~~~~~  326 (346)
                      +++++.=.|-...--..+.+.+-..| .|-+-|      -|..|.    ..-|+++-|-+.-..     ...-+.|.-.+
T Consensus       292 ~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaTG------rsd~Pn----QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AA  361 (432)
T COG0281         292 KHPIIFALANPTPEITPEDAKEWGDGAAIVATG------RSDYPN----QVNNVLIFPGIFRGALDVRAKTITDEMKIAA  361 (432)
T ss_pred             cCCEEeecCCCCccCCHHHHhhcCCCCEEEEeC------CCCCcc----cccceeEcchhhhhhHhhccccCCHHHHHHH
Confidence            99999988876632222222222222 333221      122122    678999999886431     11224555566


Q ss_pred             HHHHHHHH
Q 019081          327 GDVALQLH  334 (346)
Q Consensus       327 ~~ni~~~~  334 (346)
                      ++.|..+.
T Consensus       362 a~AiA~~~  369 (432)
T COG0281         362 AEAIADLA  369 (432)
T ss_pred             HHHHHhhc
Confidence            66665554

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.90  E-value=0.028  Score=53.20  Aligned_cols=112  Identities=21%  Similarity=0.314  Sum_probs=69.7

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHH--
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEF--  222 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~el--  222 (346)
                      ....|+++.|+|.|..+++++..|+..|+ +|++++|+..+..+-.              +.....+   ....+.++  
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La--------------~~~~~~~~~~~~~~~~~~~~  187 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA--------------DLFGELGAAVEAAALADLEG  187 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH--------------HHhhhccccccccccccccc
Confidence            45679999999999999999999999996 7999999865421111              1111111   01122211  


Q ss_pred             hhcCCEEEEeecCCcccc---CCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          223 ASKADVVVCCLSLNKQTA---GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~---~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +.++|+|+.++|..-.-.   .+++   .+.++++.++.++--.+. .+.=|-.|=+.|
T Consensus       188 ~~~~dliINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G  242 (283)
T COG0169         188 LEEADLLINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG  242 (283)
T ss_pred             ccccCEEEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence            126999999999754432   2444   445788888888765554 333333333334

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.89  E-value=0.031  Score=52.99  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      ++.+|++.|+|.|..|++++..|...|+ +|.++||+..+
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~k  163 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSR  163 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence            4568999999999999999999998998 68999997643

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=95.89  E-value=0.015  Score=47.53  Aligned_cols=100  Identities=14%  Similarity=0.268  Sum_probs=64.1

Q ss_pred             CeEEEEe----cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG----~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      |+++|||    -+..|..+.+.++..|++|+.+++....-                  ....   .+.++.|.-...|++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i------------------~G~~---~y~sl~e~p~~iDla   59 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI------------------LGIK---CYPSLAEIPEPIDLA   59 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE------------------TTEE----BSSGGGCSST-SEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE------------------CcEE---eeccccCCCCCCCEE
Confidence            6899999    78999999999999999999998765321                  1111   346777733789999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ++++|. +.+..+++  .+..+..+.+++..+    ..++++.+.+++..+.
T Consensus        60 vv~~~~-~~~~~~v~--~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   60 VVCVPP-DKVPEIVD--EAAALGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             EE-S-H-HHHHHHHH--HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             EEEcCH-HHHHHHHH--HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            999984 34444443  223345678888887    6778888888887665

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=95.85  E-value=0.13  Score=49.99  Aligned_cols=103  Identities=13%  Similarity=0.123  Sum_probs=63.8

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      ..+.|++|+++|= .++.++++..+..+|++|..+.|..-..+.....   .      +...+...+    ...++++.+
T Consensus       150 ~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~---~------~~~~~~~~g~~~~~~~d~~eav  220 (338)
T PRK02255        150 KKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLA---I------AEENCEVSGGSVLVTDDVDEAV  220 (338)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHH---H------HHHHHHhcCCeEEEEcCHHHHh
Confidence            3588999999997 6888888999999999999987643211100000   0      000000111    246899999


Q ss_pred             hcCCEEEEee-----cCCc---c------ccCCCCHHHHccCCCCcEEEEc
Q 019081          224 SKADVVVCCL-----SLNK---Q------TAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       224 ~~aDiV~~~l-----Plt~---~------T~~li~~~~l~~mk~gailIN~  260 (346)
                      ++||+|..-.     ....   +      ....++++.++.+|++++|.-+
T Consensus       221 ~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp  271 (338)
T PRK02255        221 KDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC  271 (338)
T ss_pred             CCCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCC
Confidence            9999998832     1100   0      1245677777777777766655

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.84  E-value=0.018  Score=47.16  Aligned_cols=94  Identities=26%  Similarity=0.328  Sum_probs=50.8

Q ss_pred             eEEEEe-cCHHHHHHHHHHcc-CCCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          155 TVFILG-FGNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       155 tvgIiG-~G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      +|+||| .|.+|+.+.++|.. ..+++.. +.++......-.   ..++.+.... ...   ....+. +.+.++|+|++
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~~---~~~~~~-~~~~~~Dvvf~   72 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLS---EVFPHPKGFE-DLS---VEDADP-EELSDVDVVFL   72 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHH---HTTGGGTTTE-EEB---EEETSG-HHHTTESEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeee---hhcccccccc-cee---Eeecch-hHhhcCCEEEe
Confidence            689999 99999999999874 5666544 444431111000   0000000000 000   011233 44589999999


Q ss_pred             eecCCccccCCCCHHHHcc-CCCCcEEEEcCC
Q 019081          232 CLSLNKQTAGIVNKSFLSS-MKKGSLLVNIAR  262 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~-mk~gailIN~sR  262 (346)
                      |+|....      ++.... .++|..+|+.|.
T Consensus        73 a~~~~~~------~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   73 ALPHGAS------KELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             -SCHHHH------HHHHHHHHHTTSEEEESSS
T ss_pred             cCchhHH------HHHHHHHhhCCcEEEeCCH
Confidence            9985322      222222 578999999874

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=95.83  E-value=0.045  Score=47.23  Aligned_cols=103  Identities=17%  Similarity=0.175  Sum_probs=65.3

Q ss_pred             CCCeEEEEe--cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhc
Q 019081          152 LGKTVFILG--FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK  225 (346)
Q Consensus       152 ~g~tvgIiG--~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~  225 (346)
                      .|+||++||  .+++.++++..+..||+++.++.+..-..+..... ....      .......+    -..++++.+++
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~-~~~~------~~~~~~~g~~i~~~~~~~e~l~~   73 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEV-LEKA------KKNAKKNGGKITITDDIEEALKG   73 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHH-HHHH------HHHHHHHTTEEEEESSHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHH-HHHH------HHHHHHhCCCeEEEeCHHHhcCC
Confidence            388999999  38999999999999999998887643111100000 0000      00000001    23689999999


Q ss_pred             CCEEEEeecCC---cc--------ccCCCCHHHHccCCCCcEEEEcC
Q 019081          226 ADVVVCCLSLN---KQ--------TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       226 aDiV~~~lPlt---~~--------T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +|+|..-.--.   .+        ....++++.++.+|++++|.-+.
T Consensus        74 aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   74 ADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             -SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            99997754431   10        12567999999999999998874

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.80  E-value=0.01  Score=58.43  Aligned_cols=52  Identities=21%  Similarity=0.365  Sum_probs=41.1

Q ss_pred             HHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081          134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (346)
Q Consensus       134 ~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~  185 (346)
                      |.++++-..|+......|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus        22 y~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         22 TARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            34444434465544577999999999999999999999999998 78888865

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.80  E-value=0.011  Score=47.34  Aligned_cols=81  Identities=16%  Similarity=0.158  Sum_probs=51.9

Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc--cccCCcCCHHHHhhcCCEEEEeecCCccccC
Q 019081          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKGCHEDIFEFASKADVVVCCLSLNKQTAG  241 (346)
Q Consensus       164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~  241 (346)
                      -+..+++.|+..|++|.+|||........               ...  .......++++.++.+|+|+++++-. +-+.
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~   81 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVDEEEIK---------------ELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRE   81 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSHHHHHH---------------HHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGC
T ss_pred             HHHHHHHHHHHCCCEEEEECCccChHHHH---------------hhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhc
Confidence            35788999999999999999976542110               000  00012357899999999999998743 3333


Q ss_pred             CCCHHHHccCCCCcEEEEc
Q 019081          242 IVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       242 li~~~~l~~mk~gailIN~  260 (346)
                      +--.+..+.|+++.+||++
T Consensus        82 l~~~~~~~~~~~~~~iiD~  100 (106)
T PF03720_consen   82 LDWEEIAKLMRKPPVIIDG  100 (106)
T ss_dssp             CGHHHHHHHSCSSEEEEES
T ss_pred             cCHHHHHHhcCCCCEEEEC
Confidence            3234455678899999997

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.73  E-value=0.037  Score=52.74  Aligned_cols=126  Identities=16%  Similarity=0.131  Sum_probs=67.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|||.|.+|..+|..+...|. +|..+|++.........   .+  .+........... ...+.+ .+++||+|++
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~---dl--~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii   76 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKAL---DI--AEAAPVEGFDTKITGTNDYE-DIAGSDVVVI   76 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHH---HH--HhhhhhcCCCcEEEeCCCHH-HHCCCCEEEE
Confidence            589999999999999999886654 99999986543211000   00  0000000000000 124554 5799999999


Q ss_pred             eecCCccccCCC-----------CHH---HHccCCCCcEEEEcCCCCCCCHHHHHHH--HHhCCCeEEE--Ee
Q 019081          232 CLSLNKQTAGIV-----------NKS---FLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG--ID  286 (346)
Q Consensus       232 ~lPlt~~T~~li-----------~~~---~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~--lD  286 (346)
                      +... +...+.-           -.+   .+....+.+++|+++-..=+....+.+.  +...++-|.+  ||
T Consensus        77 ~~~~-p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~ld  148 (307)
T PRK06223         77 TAGV-PRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLD  148 (307)
T ss_pred             CCCC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcH
Confidence            8632 2212210           111   2333346788888854433444444442  2224676664  55

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.73  E-value=0.015  Score=50.37  Aligned_cols=71  Identities=20%  Similarity=0.244  Sum_probs=49.2

Q ss_pred             EEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEEee
Q 019081          156 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       156 vgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      |.|+|. |.+|+.+++.|...|++|+++-|+..+.....    .        .+... ......++.+.++.+|.|+.++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~----~--------~~~~~~d~~d~~~~~~al~~~d~vi~~~   68 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSP----G--------VEIIQGDLFDPDSVKAALKGADAVIHAA   68 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCT----T--------EEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccccc----c--------cccceeeehhhhhhhhhhhhcchhhhhh
Confidence            578995 99999999999999999999998765421100    0        01110 0112345678889999999999


Q ss_pred             cCCcc
Q 019081          234 SLNKQ  238 (346)
Q Consensus       234 Plt~~  238 (346)
                      +.+..
T Consensus        69 ~~~~~   73 (183)
T PF13460_consen   69 GPPPK   73 (183)
T ss_dssp             HSTTT
T ss_pred             hhhcc
Confidence            86544

...

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.71  E-value=0.012  Score=53.26  Aligned_cols=96  Identities=19%  Similarity=0.266  Sum_probs=62.6

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      .-+|.||+|.|||.|.+|..=++.+...|++|+++.+.......   .   +....+ + .+.+   ..-+.++ +..++
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~---~---~~~~~~-i-~~~~---~~~~~~~-~~~~~   74 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELK---A---LIEEGK-I-KWIE---REFDAED-LDDAF   74 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHH---H---HHHhcC-c-chhh---cccChhh-hcCce
Confidence            45799999999999999999999999999999999876522100   0   000000 0 0111   1122333 34488


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      +|+.+++..     -+|+..+..+++-.++||+
T Consensus        75 lviaAt~d~-----~ln~~i~~~a~~~~i~vNv  102 (210)
T COG1648          75 LVIAATDDE-----ELNERIAKAARERRILVNV  102 (210)
T ss_pred             EEEEeCCCH-----HHHHHHHHHHHHhCCceec
Confidence            888887643     2567777777777788887

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.68  E-value=0.049  Score=51.74  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=33.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      .++.||++.|+|.|..+++++..+...|+ +|.+++|+.
T Consensus       120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            45788999999999999999998888887 799999975

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.67  E-value=0.025  Score=58.81  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=35.5

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .....|+|||||-|..|+.+++.++.+|++|+++|.+..
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~   56 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED   56 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            458899999999999999999999999999999998653

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.65  E-value=0.068  Score=54.28  Aligned_cols=119  Identities=16%  Similarity=0.171  Sum_probs=69.4

Q ss_pred             cccCCCeEEEEec----------CHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchhh--hcc--ccc-cccccc
Q 019081          149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKN--GII-DDLVDE  212 (346)
Q Consensus       149 ~~l~g~tvgIiG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~~--~~~--~~~-~~~~~~  212 (346)
                      ..+.|++|+|+|+          ..-...+++.|...|.+|.+||+........... ...+.  ++.  .++ ......
T Consensus       320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (473)
T PLN02353        320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ  399 (473)
T ss_pred             cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence            3689999999998          4578899999999999999999864321000000 00000  000  000 000000


Q ss_pred             cCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHH-HccCCCCcEEEEcCCCCCCCHHHH
Q 019081          213 KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF-LSSMKKGSLLVNIARGGLLDYEAI  271 (346)
Q Consensus       213 ~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~-l~~mk~gailIN~sRg~~vd~~aL  271 (346)
                      .....++.+.++.||+|+++.+.. +-+. ++-+. .+.|++..++||. | .++|.+.+
T Consensus       400 ~~~~~~~~~a~~~aD~vvi~t~~~-ef~~-l~~~~~~~~m~~~~~viD~-r-n~l~~~~~  455 (473)
T PLN02353        400 VSVVWDAYEATKGAHGICILTEWD-EFKT-LDYQKIYDNMQKPAFVFDG-R-NVLDHEKL  455 (473)
T ss_pred             eeeeCCHHHHhcCCCEEEECCCCh-Hhcc-cCHHHHHHhccCCCEEEEC-C-CCCCHHHH
Confidence            001235678899999999998753 3333 34444 4557766688985 4 44565554

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=95.64  E-value=0.19  Score=48.82  Aligned_cols=138  Identities=14%  Similarity=0.110  Sum_probs=80.5

Q ss_pred             hhHHhhCCcEEEecCCCCCCC-hhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecC--HHHHHH
Q 019081           92 INAATRCGIKVARIPGDVTGN-AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVEL  168 (346)
Q Consensus        92 ~~~~~~~gI~v~n~p~~~~~n-a~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G--~IG~~v  168 (346)
                      .+.+...+|+|.|.-+. ..| .++.++     ++.+.++                .|..+.|++|++||=+  ++.+++
T Consensus       116 ~~~a~~~~vPVINa~~~-~~HPtQaL~D-----l~Ti~e~----------------~g~~l~gl~ia~vGD~~~~v~~Sl  173 (334)
T PRK01713        116 NELAEYAGVPVFNGLTD-EFHPTQMLAD-----VLTMIEN----------------CDKPLSEISYVYIGDARNNMGNSL  173 (334)
T ss_pred             HHHHHhCCCCEEECCCC-CCChHHHHHH-----HHHHHHH----------------cCCCcCCcEEEEECCCccCHHHHH
Confidence            34455678999998443 222 333444     2222211                1234789999999986  678888


Q ss_pred             HHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcCCEEEEee----cCC-c--
Q 019081          169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCL----SLN-K--  237 (346)
Q Consensus       169 A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDiV~~~l----Plt-~--  237 (346)
                      +..+..||++|.+..|..-......   ...      ........+    ...++++.+++||+|..-.    ... +  
T Consensus       174 ~~~~~~~g~~v~~~~P~~~~p~~~~---~~~------~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~  244 (334)
T PRK01713        174 LLIGAKLGMDVRICAPKALLPEASL---VEM------CEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETW  244 (334)
T ss_pred             HHHHHHcCCEEEEECCchhcCCHHH---HHH------HHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhH
Confidence            9999999999998876432111000   000      000111111    2478999999999998732    100 0  


Q ss_pred             ------cccCCCCHHHHccC-CCCcEEEEc
Q 019081          238 ------QTAGIVNKSFLSSM-KKGSLLVNI  260 (346)
Q Consensus       238 ------~T~~li~~~~l~~m-k~gailIN~  260 (346)
                            .....++.+.++.. |++++|.-+
T Consensus       245 ~~~~~~~~~y~v~~ell~~a~k~~aivmH~  274 (334)
T PRK01713        245 GERIKLLMPYQVTPELMKRTGNPKVKFMHC  274 (334)
T ss_pred             HHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence                  01344677777775 678877766

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.63  E-value=0.029  Score=54.64  Aligned_cols=95  Identities=25%  Similarity=0.242  Sum_probs=54.8

Q ss_pred             CeEEEEec-CHHHHHHHHHHccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          154 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      .+|+|+|. |.+|+.+++.|... ++++.. ++++.........   .++  +  +...........+.++++.++|+|+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~---~~~--~--l~~~~~~~~~~~~~~~~~~~~DvVf   73 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE---VHP--H--LRGLVDLNLEPIDEEEIAEDADVVF   73 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH---hCc--c--ccccCCceeecCCHHHhhcCCCEEE
Confidence            37999998 99999999999876 778774 3543211100000   000  0  0000000001125566667899999


Q ss_pred             EeecCCccccCCCCHHHHccC-CCCcEEEEcC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIA  261 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~m-k~gailIN~s  261 (346)
                      +|+|.. .     .++....+ +.|..+|+.|
T Consensus        74 ~alP~~-~-----s~~~~~~~~~~G~~VIDlS   99 (346)
T TIGR01850        74 LALPHG-V-----SAELAPELLAAGVKVIDLS   99 (346)
T ss_pred             ECCCch-H-----HHHHHHHHHhCCCEEEeCC
Confidence            999953 2     23333333 5688899887

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.62  E-value=0.019  Score=58.54  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=32.7

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      +.|++|.|+|+|.+|.+.++.|+..|++|+++|..
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            46899999999999999999999999999999965

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.60  E-value=0.044  Score=52.64  Aligned_cols=123  Identities=15%  Similarity=0.159  Sum_probs=67.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccc--ccCCcCCHHHHhhcCCE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFASKADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDi  228 (346)
                      ..+|+|||.|.||..+|..+...|.  ++..||.+......... +..+.      ..+..  ......+.++ +++||+
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~-Dl~~~------~~~~~~~~v~~~~dy~~-~~~adi   74 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAM-DLQHG------SAFLKNPKIEADKDYSV-TANSKV   74 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHH-HHHHh------hccCCCCEEEECCCHHH-hCCCCE
Confidence            3599999999999999998865554  79999986542211110 00000      00000  0001245555 899999


Q ss_pred             EEEeecCCccccCC-----C--C-------HHHHccCCCCcEEEEcCCCCCCCHHHHHHH--HHhCCCeEEE
Q 019081          229 VVCCLSLNKQTAGI-----V--N-------KSFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG  284 (346)
Q Consensus       229 V~~~lPlt~~T~~l-----i--~-------~~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~  284 (346)
                      |+++.-.. ...++     +  |       .+.+....|.+++|+++-.-=+-...+.+.  +...++.|.+
T Consensus        75 vvitaG~~-~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~g  145 (312)
T cd05293          75 VIVTAGAR-QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSG  145 (312)
T ss_pred             EEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecC
Confidence            99965321 11222     1  1       123444578999999983222223333333  4455666663

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.59  E-value=0.048  Score=52.45  Aligned_cols=111  Identities=10%  Similarity=0.039  Sum_probs=70.2

Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCccccc-------cc-c--ccchhhhccccccc-----cccccCCcC--CHHHHhhcC
Q 019081          164 IGVELAKRLRPFGVKIIATKRSWASHSQ-------VS-C--QSSALAVKNGIIDD-----LVDEKGCHE--DIFEFASKA  226 (346)
Q Consensus       164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~-------~~-~--~~~~~~~~~~~~~~-----~~~~~~~~~--~l~ell~~a  226 (346)
                      ||..+|..+...|++|+.||++......       .. .  ......+..+.+..     .........  +..+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            5888999998889999999998742100       00 0  00000001110000     000000111  356788999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      |+|+-++|-+.+.+.-+-++..+.++++++|  +|.-+.+....|.+.++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence            9999999999998888878888889999998  44555667777887774

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.58  E-value=0.022  Score=47.04  Aligned_cols=67  Identities=25%  Similarity=0.379  Sum_probs=41.9

Q ss_pred             eEEEEec-CHHHHHHHHHHcc-CCCEEE-EEcCCCccccccccccchhhhccccccccc--cccC--CcCCHHHHhhcCC
Q 019081          155 TVFILGF-GNIGVELAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKG--CHEDIFEFASKAD  227 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~ell~~aD  227 (346)
                      +|+|+|+ |+||+.+++.+.. -|+++. +++++...... .+           +.+..  ...+  ...++++++.++|
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g-~d-----------~g~~~~~~~~~~~v~~~l~~~~~~~D   69 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG-KD-----------VGELAGIGPLGVPVTDDLEELLEEAD   69 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT-SB-----------CHHHCTSST-SSBEBS-HHHHTTH-S
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc-ch-----------hhhhhCcCCcccccchhHHHhcccCC
Confidence            7999999 9999999999886 789854 56665421100 00           00000  0111  2478999999999


Q ss_pred             EEEEee
Q 019081          228 VVVCCL  233 (346)
Q Consensus       228 iV~~~l  233 (346)
                      +|+-..
T Consensus        70 VvIDfT   75 (124)
T PF01113_consen   70 VVIDFT   75 (124)
T ss_dssp             EEEEES
T ss_pred             EEEEcC
Confidence            887765

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=95.55  E-value=0.023  Score=55.26  Aligned_cols=33  Identities=39%  Similarity=0.490  Sum_probs=30.5

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ||||||.|..|+.+++.++.+|++|+++|.+..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~   33 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDAN   33 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCC
Confidence            699999999999999999999999999998654

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.50  E-value=0.027  Score=53.57  Aligned_cols=102  Identities=20%  Similarity=0.246  Sum_probs=59.8

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhcc----------------cccccc-cccc---
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKN----------------GIIDDL-VDEK---  213 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~~---  213 (346)
                      +|.|+|+|.+|..+|+.|...|. +++.+|...-......++. -|...+                ++-... +..+   
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~-L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~   79 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQS-LFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS   79 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCccc-ccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeee
Confidence            58999999999999999999998 5888875432211111100 000000                000000 0000   


Q ss_pred             -----------------CCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          214 -----------------GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       214 -----------------~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                                       .....++++++++|+|+.++ .+-++|.+++.--...   +..+||.+
T Consensus        80 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aa  140 (307)
T cd01486          80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAA  140 (307)
T ss_pred             ccccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEE
Confidence                             01123678999999999998 4778888887665443   33666654

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.50  E-value=0.025  Score=52.30  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=33.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++.+|...
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            56899999999999999999999998887 688888654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=95.49  E-value=0.078  Score=50.70  Aligned_cols=98  Identities=21%  Similarity=0.231  Sum_probs=61.7

Q ss_pred             ccCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHH
Q 019081          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEF  222 (346)
Q Consensus       150 ~l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~el  222 (346)
                      .+.|++|+++|-|   ++.++++..+..||++|....|..-..+..            .+ +.....+    ...++++.
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~------------~~-~~~~~~G~~v~~~~d~~~a  213 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKE------------IL-EELKAKGIKVRETESLEEV  213 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHH------------HH-HHHHHcCCEEEEECCHHHH
Confidence            4789999999995   999999999999999999987643211100            00 0011111    24789999


Q ss_pred             hhcCCEEEEeecCCc------c-----ccCCCCHHHHccCCCCcEEEEc
Q 019081          223 ASKADVVVCCLSLNK------Q-----TAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       223 l~~aDiV~~~lPlt~------~-----T~~li~~~~l~~mk~gailIN~  260 (346)
                      ++.||+|...---.+      +     ...-++++.++.+|++++|.-+
T Consensus       214 ~~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHc  262 (301)
T TIGR00670       214 IDEADVLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHP  262 (301)
T ss_pred             hCCCCEEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECC
Confidence            999999977311000      0     1233455666666666666544

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=95.47  E-value=0.35  Score=46.33  Aligned_cols=101  Identities=17%  Similarity=0.196  Sum_probs=63.0

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhc
Q 019081          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK  225 (346)
Q Consensus       151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~  225 (346)
                      +.|.+|+++|- +++-++++..+..||++|....|..-..+.....         .+.......+    ...++++.+++
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~---------~~~~~~~~~g~~~~~~~d~~~a~~~  216 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVK---------KAQEIAKENGGSVELTHDPVEAVKG  216 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHH---------HHHHHHHHcCCeEEEEcCHHHHhCC
Confidence            78999999997 7888999999999999999887643221100000         0000011111    23689999999


Q ss_pred             CCEEEEee-c-CCc----------cccCCCCHHHHccCCCCcEEEEc
Q 019081          226 ADVVVCCL-S-LNK----------QTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       226 aDiV~~~l-P-lt~----------~T~~li~~~~l~~mk~gailIN~  260 (346)
                      ||+|..-. . ...          .....++++.++.+|+++++.-+
T Consensus       217 aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp  263 (304)
T TIGR00658       217 ADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC  263 (304)
T ss_pred             CCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence            99998742 1 110          12345677777777777766554

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.47  E-value=0.013  Score=55.36  Aligned_cols=113  Identities=24%  Similarity=0.343  Sum_probs=73.2

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc-cccchhhhccccccccccccCC----------c
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGC----------H  216 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------~  216 (346)
                      +......++-++|+|-+|-..+...+..|+-|..+|-+....++.. ..-....+.+   .+....+..          .
T Consensus       159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~---ee~~gGYAk~ms~~~~~~q~  235 (356)
T COG3288         159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVED---EESAGGYAKEMSEEFIAKQA  235 (356)
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccc---cccCCCccccCCHHHHHHHH
Confidence            3456778899999999999999999999999999886553321111 0000000000   000000111          1


Q ss_pred             CCHHHHhhcCCEEEEe--ecCCccccCCCCHHHHccCCCCcEEEEcC--CCC
Q 019081          217 EDIFEFASKADVVVCC--LSLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGG  264 (346)
Q Consensus       217 ~~l~ell~~aDiV~~~--lPlt~~T~~li~~~~l~~mk~gailIN~s--Rg~  264 (346)
                      .-+.+.+++.|||+..  +|.. ....|+.++..+.||||+++|+.+  +|+
T Consensus       236 ~~~a~~~~~~DivITTAlIPGr-pAP~Lvt~~mv~sMkpGSViVDlAa~~GG  286 (356)
T COG3288         236 ELVAEQAKEVDIVITTALIPGR-PAPKLVTAEMVASMKPGSVIVDLAAETGG  286 (356)
T ss_pred             HHHHHHhcCCCEEEEecccCCC-CCchhhHHHHHHhcCCCcEEEEehhhcCC
Confidence            2345667899999764  5654 346789999999999999999985  554

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.46  E-value=0.17  Score=50.57  Aligned_cols=137  Identities=17%  Similarity=0.195  Sum_probs=78.4

Q ss_pred             hHHhhCCcEEEecC-CCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecC---HHHHHH
Q 019081           93 NAATRCGIKVARIP-GDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG---NIGVEL  168 (346)
Q Consensus        93 ~~~~~~gI~v~n~p-~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G---~IG~~v  168 (346)
                      +.+...+|+|.|.- |...--.++.|+.     +.+..++         |.    .+..+.|+||+++|-+   ++..++
T Consensus       198 e~A~~s~vPVINAgdg~~~HPtQaLaDl-----~Ti~E~~---------g~----~g~~l~G~kIa~vGD~~~~rv~~Sl  259 (429)
T PRK11891        198 EFARATNLPVINGGDGPGEHPSQALLDL-----YTIQREF---------SR----LGKIVDGAHIALVGDLKYGRTVHSL  259 (429)
T ss_pred             HHHHhCCCCEEECCCCCCCCcHHHHHHH-----HHHHHHh---------Cc----cCCCcCCCEEEEECcCCCChHHHHH
Confidence            34556789999975 3221123444552     2222211         11    1234889999999994   899999


Q ss_pred             HHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcCCEEEEeecCCcc-----
Q 019081          169 AKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVVVCCLSLNKQ-----  238 (346)
Q Consensus       169 A~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDiV~~~lPlt~~-----  238 (346)
                      +..+..+ |++|....|..-..+..            ++ +.....+    ...++++.+++||+|....--.+.     
T Consensus       260 ~~~la~~~G~~v~l~~P~~~~~~~~------------~~-~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~q~er~~~~~  326 (429)
T PRK11891        260 VKLLALYRGLKFTLVSPPTLEMPAY------------IV-EQISRNGHVIEQTDDLAAGLRGADVVYATRIQKERFADES  326 (429)
T ss_pred             HHHHHHhcCCEEEEECCCccccCHH------------HH-HHHHhcCCeEEEEcCHHHHhCCCCEEEEcCchhhcccCHH
Confidence            9988776 99999887643211000            00 0111111    247899999999999884321010     


Q ss_pred             -----ccCCCCHHHHcc-CCCCcEEEEc
Q 019081          239 -----TAGIVNKSFLSS-MKKGSLLVNI  260 (346)
Q Consensus       239 -----T~~li~~~~l~~-mk~gailIN~  260 (346)
                           ....++++.++. .|++++|.-+
T Consensus       327 ~~~~~~~y~vt~ell~~~ak~dai~MHc  354 (429)
T PRK11891        327 FEGYTPDFQINQALVDAVCKPDTLIMHP  354 (429)
T ss_pred             HHHhccCCcCCHHHHhCccCCCcEEECC
Confidence                 123456666666 6666665544

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=95.42  E-value=0.17  Score=48.98  Aligned_cols=74  Identities=22%  Similarity=0.194  Sum_probs=49.0

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .+.|+||++||-+  ++.++++..+..||++|....|..-.......   .      .........+    ...++++++
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~---~------~~~~~~~~~g~~~~~~~d~~ea~  222 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELV---A------LAREIAKETGAKITITEDPEEAV  222 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHH---H------HHHHHHHHcCCeEEEEcCHHHHh
Confidence            4789999999997  88999999999999999988764321110000   0      0000111111    236899999


Q ss_pred             hcCCEEEEe
Q 019081          224 SKADVVVCC  232 (346)
Q Consensus       224 ~~aDiV~~~  232 (346)
                      ++||+|..-
T Consensus       223 ~~aDvvyt~  231 (331)
T PRK02102        223 KGADVIYTD  231 (331)
T ss_pred             CCCCEEEEc
Confidence            999999884

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.38  E-value=0.025  Score=54.57  Aligned_cols=131  Identities=13%  Similarity=0.114  Sum_probs=71.6

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      +..++|+|||.|.+|..+|..+...|. +|+.+|.+........ .+..+.  ... ...........+. +.+++||+|
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~-ld~~~~--~~~-~~~~~~I~~~~d~-~~l~~aDiV   78 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKA-LDISHS--NVI-AGSNSKVIGTNNY-EDIAGSDVV   78 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHH-HHHHhh--hhc-cCCCeEEEECCCH-HHhCCCCEE
Confidence            345799999999999999999887774 8999998765321100 000000  000 0000000112466 467999999


Q ss_pred             EEeecCCccccCC-----------------CC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH--hCCCeEEE--Ee
Q 019081          230 VCCLSLNKQTAGI-----------------VN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE--CGHLGGLG--ID  286 (346)
Q Consensus       230 ~~~lPlt~~T~~l-----------------i~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~--~g~i~ga~--lD  286 (346)
                      +++.-.. ...+.                 +.  .+.+....|.+++||++-..=+-...+.+...  ..++-|.+  ||
T Consensus        79 I~tag~~-~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlgt~ld  157 (321)
T PTZ00082         79 IVTAGLT-KRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLD  157 (321)
T ss_pred             EECCCCC-CCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEecCccc
Confidence            9976321 11122                 11  12234445788999998443333444444332  34676766  45


Q ss_pred             c
Q 019081          287 V  287 (346)
Q Consensus       287 V  287 (346)
                      -
T Consensus       158 s  158 (321)
T PTZ00082        158 S  158 (321)
T ss_pred             H
Confidence            4

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.36  E-value=0.064  Score=53.90  Aligned_cols=130  Identities=18%  Similarity=0.265  Sum_probs=75.5

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      ..+++|.|+|+|.-|+++|+.|+..|++|+++|.+..........    .     ..+.........+. +.+..+|+|+
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~----~-----~~~~i~~~~g~~~~-~~~~~~d~vV   74 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQP----L-----LLEGIEVELGSHDD-EDLAEFDLVV   74 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhh----h-----hccCceeecCccch-hccccCCEEE
Confidence            459999999999999999999999999999999765441000000    0     00000000011122 6678899998


Q ss_pred             EeecCCccccCC-----------CCH-HHHccC-CCCcEEEEc-CCCCCCCHHHHHHHHHh--------CCCeEEEEecC
Q 019081          231 CCLSLNKQTAGI-----------VNK-SFLSSM-KKGSLLVNI-ARGGLLDYEAIAHYLEC--------GHLGGLGIDVA  288 (346)
Q Consensus       231 ~~lPlt~~T~~l-----------i~~-~~l~~m-k~gailIN~-sRg~~vd~~aL~~aL~~--------g~i~ga~lDV~  288 (346)
                      .. |.-+-+.-+           ++. +.|-+. ++..++-=| +-|.--.+.-+.+.|++        |.|+..++|+.
T Consensus        75 ~S-PGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~  153 (448)
T COG0771          75 KS-PGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELL  153 (448)
T ss_pred             EC-CCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhh
Confidence            85 322222222           222 223332 233344444 45665555555555554        67888899999


Q ss_pred             CCC
Q 019081          289 WTE  291 (346)
Q Consensus       289 ~~E  291 (346)
                      +++
T Consensus       154 ~~~  156 (448)
T COG0771         154 EQA  156 (448)
T ss_pred             ccc
Confidence            874

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.35  E-value=0.026  Score=54.31  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=32.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~  188 (346)
                      .+++|+|||.|.||..+|-.+...|.  ++..+|++...
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~   43 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEK   43 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCch
Confidence            56799999999999999999987787  89999986543

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.30  E-value=0.029  Score=55.41  Aligned_cols=106  Identities=19%  Similarity=0.257  Sum_probs=63.7

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHH-HhhcCC
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFE-FASKAD  227 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~e-ll~~aD  227 (346)
                      .-++|+|+|. |.+|+.+.+.|... +++|..+.+.......-.     ...+     .+..... ...+++. .++++|
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~-----~~~~-----~l~~~~~~~~~~~~~~~~~~~D  106 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFG-----SVFP-----HLITQDLPNLVAVKDADFSDVD  106 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCch-----hhCc-----cccCccccceecCCHHHhcCCC
Confidence            4558999998 99999999999876 778887765322110000     0000     0000000 1122222 258899


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHH
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH  273 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~  273 (346)
                      +|++++|..      ...+....|+.|..+|+.|-.-..+..+.++
T Consensus       107 vVf~Alp~~------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~  146 (381)
T PLN02968        107 AVFCCLPHG------TTQEIIKALPKDLKIVDLSADFRLRDIAEYE  146 (381)
T ss_pred             EEEEcCCHH------HHHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence            999999853      3445555567789999998666555544333

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.30  E-value=0.018  Score=46.34  Aligned_cols=88  Identities=22%  Similarity=0.294  Sum_probs=52.0

Q ss_pred             EEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCH---HH-HhhcCCEEE
Q 019081          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDI---FE-FASKADVVV  230 (346)
Q Consensus       156 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l---~e-ll~~aDiV~  230 (346)
                      +.|+|+|.+|+.+++.|+..+.+|+++|+++........             .... -.+...+.   ++ =+.++|.|+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------------~~~~~i~gd~~~~~~l~~a~i~~a~~vv   67 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------------EGVEVIYGDATDPEVLERAGIEKADAVV   67 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------------TTSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------------cccccccccchhhhHHhhcCccccCEEE
Confidence            569999999999999999977799999987643211110             0111 11222233   22 257899999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEE
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLV  258 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailI  258 (346)
                      +..+..  ...+.-...++.+-+...+|
T Consensus        68 ~~~~~d--~~n~~~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   68 ILTDDD--EENLLIALLARELNPDIRII   93 (116)
T ss_dssp             EESSSH--HHHHHHHHHHHHHTTTSEEE
T ss_pred             EccCCH--HHHHHHHHHHHHHCCCCeEE
Confidence            998743  33333344455555555554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.29  E-value=0.02  Score=56.46  Aligned_cols=43  Identities=26%  Similarity=0.380  Sum_probs=36.0

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~  185 (346)
                      |+......|.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus       125 ~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        125 VGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            44323356899999999999999999999999998 68888875

>PRK05086 malate dehydrogenase; Provisional

Probab=95.28  E-value=0.063  Score=51.58  Aligned_cols=102  Identities=24%  Similarity=0.231  Sum_probs=58.3

Q ss_pred             CeEEEEec-CHHHHHHHHHHc---cCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCE
Q 019081          154 KTVFILGF-GNIGVELAKRLR---PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  228 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~---~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  228 (346)
                      ++++|||. |.||+.++..+.   ..+.++..+|++........+    +  .+.  .....-.+ ...++.+.+++||+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alD----l--~~~--~~~~~i~~~~~~d~~~~l~~~Di   72 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVD----L--SHI--PTAVKIKGFSGEDPTPALEGADV   72 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehh----h--hcC--CCCceEEEeCCCCHHHHcCCCCE
Confidence            48999999 999999997763   456688999986432100000    0  000  00000000 12466778899999


Q ss_pred             EEEeecCCccccCC-----------CCHHH---HccCCCCcEEEEcCCCC
Q 019081          229 VVCCLSLNKQTAGI-----------VNKSF---LSSMKKGSLLVNIARGG  264 (346)
Q Consensus       229 V~~~lPlt~~T~~l-----------i~~~~---l~~mk~gailIN~sRg~  264 (346)
                      |++++-. +...++           +-++.   ++.-.+.+++++++-.-
T Consensus        73 VIitaG~-~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~  121 (312)
T PRK05086         73 VLISAGV-ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV  121 (312)
T ss_pred             EEEcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence            9998754 222222           11222   33335788999996544

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.28  E-value=0.022  Score=56.08  Aligned_cols=75  Identities=20%  Similarity=0.301  Sum_probs=44.5

Q ss_pred             EEEEecCHHHHHHHHHHccCC-C-EEEEEcCCCccccccccccchhhhccccccccccc-cCCcCCHHHHhhcCCEEEEe
Q 019081          156 VFILGFGNIGVELAKRLRPFG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       156 vgIiG~G~IG~~vA~~l~~~G-~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDiV~~~  232 (346)
                      |+|+|.|.+|+.+++.|...+ . +|++.||+..+........     .... ...... .....++.++++++|+|+.+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-----~~~~-~~~~~~d~~~~~~l~~~~~~~dvVin~   74 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-----LGDR-VEAVQVDVNDPESLAELLRGCDVVINC   74 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-------TTTT-EEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-----cccc-eeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence            689999999999999998665 5 8999999865421110000     0000 000000 01234588899999999999


Q ss_pred             ecCC
Q 019081          233 LSLN  236 (346)
Q Consensus       233 lPlt  236 (346)
                      +|..
T Consensus        75 ~gp~   78 (386)
T PF03435_consen   75 AGPF   78 (386)
T ss_dssp             SSGG
T ss_pred             Cccc
Confidence            9754

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02342 ornithine carbamoyltransferase

Probab=95.27  E-value=0.41  Score=46.72  Aligned_cols=102  Identities=14%  Similarity=0.020  Sum_probs=62.4

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCC
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKAD  227 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aD  227 (346)
                      .+.|++|+++|= .++.++++..+..||++|....|..-.......   ..      ...... ......++++.+++||
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~---~~------a~~~g~~~~~~~~d~~eav~~aD  261 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTV---EK------ARAAGISKIEITNDPAEAVKGAD  261 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHH---HH------HHHhCCCcEEEEcCHHHHhCCCC
Confidence            478999999997 467888888889999999988764321110000   00      000000 0112478999999999


Q ss_pred             EEEEee---cCC-cc--------ccCCCCHHHHccCCCCcEEEEc
Q 019081          228 VVVCCL---SLN-KQ--------TAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       228 iV~~~l---Plt-~~--------T~~li~~~~l~~mk~gailIN~  260 (346)
                      +|..-.   -.. +.        ....++++.++.+|++++|.-+
T Consensus       262 Vvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp  306 (348)
T PLN02342        262 VVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC  306 (348)
T ss_pred             EEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence            998752   111 10        2255677777777777766555

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.21  E-value=0.035  Score=50.29  Aligned_cols=38  Identities=29%  Similarity=0.267  Sum_probs=33.9

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS  185 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~  185 (346)
                      ...|..++|+|+|+|.+|..+|+.|...|.. +..+|..
T Consensus        23 q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4568999999999999999999999988884 8888875

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=95.16  E-value=0.054  Score=46.25  Aligned_cols=84  Identities=21%  Similarity=0.223  Sum_probs=52.2

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      ..|++|++||+=   +.++++++..+.++.++|+++.......             ...     .....++++++||+|+
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~-------------~~~-----~~~~~~~~l~~aD~vi   67 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEP-------------GDV-----PDEDAEEILPWADVVI   67 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSC-------------T-E-----EGGGHHHHGGG-SEEE
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCC-------------CcC-----CHHHHHHHHccCCEEE
Confidence            478999999961   2378888888999999999764310000             000     2245678899999998


Q ss_pred             EeecCCccccCCCC---HHHHccCCCCcEEEEcC
Q 019081          231 CCLSLNKQTAGIVN---KSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       231 ~~lPlt~~T~~li~---~~~l~~mk~gailIN~s  261 (346)
                      +.-    .|  ++|   .+.+++.++++.+|=++
T Consensus        68 iTG----sT--lvN~Ti~~iL~~~~~~~~vil~G   95 (147)
T PF04016_consen   68 ITG----ST--LVNGTIDDILELARNAREVILYG   95 (147)
T ss_dssp             EEC----HH--CCTTTHHHHHHHTTTSSEEEEES
T ss_pred             EEe----ee--eecCCHHHHHHhCccCCeEEEEe
Confidence            842    22  444   34566667666666554

; PDB: 3L5O_B 3NPG_A.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.06  E-value=0.024  Score=56.81  Aligned_cols=77  Identities=16%  Similarity=0.065  Sum_probs=45.5

Q ss_pred             eEEEEecCHHHHHHHH---HH---ccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          155 TVFILGFGNIGVELAK---RL---RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~---~l---~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      +|+|||.|.+|...+-   .+   ...|.+|..||++.......... .....+..   ..........++.+.++.||+
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~-~~~~~~~~---~~~~~I~~ttD~~eal~~AD~   77 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEIL-AKKIVEEL---GAPLKIEATTDRREALDGADF   77 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHH-HHHHHHhc---CCCeEEEEeCCHHHHhcCCCE
Confidence            7999999999998544   22   34477999999876432110000 00000000   000000124678899999999


Q ss_pred             EEEeecC
Q 019081          229 VVCCLSL  235 (346)
Q Consensus       229 V~~~lPl  235 (346)
                      |+.++|.
T Consensus        78 Vi~ai~~   84 (423)
T cd05297          78 VINTIQV   84 (423)
T ss_pred             EEEeeEe
Confidence            9999983

linked to 3D####ucture

>PRK13529 malate dehydrogenase; Provisional

Probab=95.06  E-value=0.85  Score=47.00  Aligned_cols=229  Identities=18%  Similarity=0.205  Sum_probs=136.9

Q ss_pred             cCCCCeEEEEcCccCCc-cchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccc
Q 019081           73 RANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETL  151 (346)
Q Consensus        73 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l  151 (346)
                      ..|+. +|+.-=-+-.+ +.+..-.+..|.+.|.-=      ..+|--+++.+|+.+|-.                |..|
T Consensus       237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDi------QGTaaV~LAgll~A~r~~----------------g~~l  293 (563)
T PRK13529        237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDI------QGTGAVTLAGLLAALKIT----------------GEPL  293 (563)
T ss_pred             hCCCe-EEehhhcCCchHHHHHHHhccCCCeecccc------chHHHHHHHHHHHHHHHh----------------CCCh
Confidence            35675 66655444433 444444556788888632      456777888888888742                5789


Q ss_pred             CCCeEEEEecCHHHHHHHHHHcc----CCC-------EEEEEcCCCcc---ccccccccchhhhccccccccccccCCcC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSWAS---HSQVSCQSSALAVKNGIIDDLVDEKGCHE  217 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~----~G~-------~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (346)
                      .+.++.|+|.|..|-.+|+.+..    .|.       +++.+|+..--   ...-......|+........+ .......
T Consensus       294 ~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~-~~~~~~~  372 (563)
T PRK13529        294 SDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADW-DTEGDVI  372 (563)
T ss_pred             hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccc-ccccCCC
Confidence            99999999999999999998875    587       78999976311   100000000011000000000 0000125


Q ss_pred             CHHHHhhcC--CEEEEeecCCccccCCCCHHHHccCCC---CcEEEEcCCCCCCCHHHHHHHHH--hCC-CeEEEEecCC
Q 019081          218 DIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSLLVNIARGGLLDYEAIAHYLE--CGH-LGGLGIDVAW  289 (346)
Q Consensus       218 ~l~ell~~a--DiV~~~lPlt~~T~~li~~~~l~~mk~---gailIN~sRg~~vd~~aL~~aL~--~g~-i~ga~lDV~~  289 (346)
                      +|.|+++.+  |+++-+-    ...|.|+++.++.|.+   ..++.=.|......|-.-.+|.+  +|+ |.+.|-    
T Consensus       373 ~L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs----  444 (563)
T PRK13529        373 SLLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS----  444 (563)
T ss_pred             CHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC----
Confidence            899999988  9988642    2347999999999987   89999999888755544445555  454 443332    


Q ss_pred             CCCCCC---CC---CCCCCCceEEccCCCCC-----cHHHHHHHHHHHHHHHHHHHc
Q 019081          290 TEPFDP---ND---PILKFKNVLITPHVGGV-----TEHSYRSMAKVVGDVALQLHA  335 (346)
Q Consensus       290 ~EPl~~---~~---pL~~~~nviiTPH~a~~-----t~~~~~~~~~~~~~ni~~~~~  335 (346)
                        |+++   +.   .-=..-|+++-|=++-.     .......|...+++.|-.+..
T Consensus       445 --pf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~  499 (563)
T PRK13529        445 --PFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVP  499 (563)
T ss_pred             --CCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence              2221   11   11135788999977632     112224555566666555443

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=95.05  E-value=0.52  Score=45.27  Aligned_cols=66  Identities=20%  Similarity=0.068  Sum_probs=47.5

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc
Q 019081          150 TLLGKTVFILGF---GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (346)
Q Consensus       150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (346)
                      .+.|.+|+++|=   +++.++++..+..||+ +|....|..-.   +..             ..........++++.++.
T Consensus       154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~---p~~-------------~~~~~~~~~~d~~ea~~~  217 (310)
T PRK13814        154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLL---PDK-------------VGNDSIKKFTELKPSLLN  217 (310)
T ss_pred             CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccC---cCc-------------cccceEEEEcCHHHHhCC
Confidence            378999999998   5999999999999999 89887763211   000             000011124689999999


Q ss_pred             CCEEEE
Q 019081          226 ADVVVC  231 (346)
Q Consensus       226 aDiV~~  231 (346)
                      +|+|..
T Consensus       218 aDvvy~  223 (310)
T PRK13814        218 SDVIVT  223 (310)
T ss_pred             CCEEEE
Confidence            999976

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.04  E-value=0.033  Score=53.35  Aligned_cols=99  Identities=20%  Similarity=0.149  Sum_probs=57.4

Q ss_pred             eEEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          155 TVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      +|+|||.|.+|..+|..+...|  .+|..+|++.......... ......     ..........+. +.+++||+|+++
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~d-l~~~~~-----~~~~~~i~~~d~-~~l~~aDiViit   74 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMD-LAHGTP-----FVKPVRIYAGDY-ADCKGADVVVIT   74 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHH-HHcccc-----ccCCeEEeeCCH-HHhCCCCEEEEc
Confidence            7999999999999999998888  5899999875432110000 000000     000000011344 458999999999


Q ss_pred             ecCCccccCC------------CC--HHHHccCCCCcEEEEcC
Q 019081          233 LSLNKQTAGI------------VN--KSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       233 lPlt~~T~~l------------i~--~~~l~~mk~gailIN~s  261 (346)
                      .+... ..++            +.  .+.+....+.+++++++
T Consensus        75 a~~~~-~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          75 AGANQ-KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             cCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            88532 2222            10  12233345678888885

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=95.02  E-value=0.15  Score=47.39  Aligned_cols=136  Identities=15%  Similarity=0.193  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccC----CC-------EEEEEcC
Q 019081          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  184 (346)
Q Consensus       116 vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~----G~-------~V~~~d~  184 (346)
                      +|=-+++-+++.+|-.                +..|.+.++.|+|.|..|-.+|+.+...    |.       +++.+|+
T Consensus         4 TaaV~lAgll~Al~~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~   67 (255)
T PF03949_consen    4 TAAVVLAGLLNALRVT----------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDS   67 (255)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEET
T ss_pred             hHHHHHHHHHHHHHHh----------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEec
Confidence            4556777778777653                5779999999999999999999998877    87       4888887


Q ss_pred             CCccccccccccchhhhccccccccccccCC---cCCHHHHhhcC--CEEEEeecCCccccCCCCHHHHccCCC---CcE
Q 019081          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGC---HEDIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSL  256 (346)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~a--DiV~~~lPlt~~T~~li~~~~l~~mk~---gai  256 (346)
                      ..--.... .....+  +    ..+......   ..+|.|+++.+  |+++-.-    ...++|+++.++.|.+   ..+
T Consensus        68 ~Gll~~~r-~~l~~~--~----~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPI  136 (255)
T PF03949_consen   68 KGLLTDDR-EDLNPH--K----KPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPI  136 (255)
T ss_dssp             TEEEBTTT-SSHSHH--H----HHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEE
T ss_pred             cceEeccC-ccCChh--h----hhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCE
Confidence            53211000 000000  0    111222112   24899999999  9998752    2678999999999987   899


Q ss_pred             EEEcCCCCCCCHHHHHHHHHhC
Q 019081          257 LVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       257 lIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +.=.|....-.|-.-.+|.+-+
T Consensus       137 IF~LSNPt~~aE~~peda~~~t  158 (255)
T PF03949_consen  137 IFPLSNPTPKAECTPEDAYEWT  158 (255)
T ss_dssp             EEE-SSSCGGSSS-HHHHHHTT
T ss_pred             EEECCCCCCcccCCHHHHHhhC
Confidence            9999988775455555555543

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.97  E-value=0.012  Score=49.73  Aligned_cols=122  Identities=20%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             EEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecC
Q 019081          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL  235 (346)
Q Consensus       156 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPl  235 (346)
                      ++|+|.|.||.-+|.+|+..|.+|..+.|.. ....  ....++.+....-...........+..+....+|+|++++..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEA--IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHH--HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHh--hhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence            6899999999999999988999999998865 2110  000011111000000000000011223466889999999874


Q ss_pred             CccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       236 t~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                      . ++...+.. .-...++++.++-.--| +-.++.|.+.+...++.++
T Consensus        78 ~-~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g  122 (151)
T PF02558_consen   78 Y-QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGG  122 (151)
T ss_dssp             G-GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEE
T ss_pred             c-chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEE
Confidence            3 33333332 22334556666655444 5556777777655566544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=94.96  E-value=0.074  Score=58.65  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=66.9

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccc---c--cccc-----------cchhhhccccccccccc-
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS---Q--VSCQ-----------SSALAVKNGIIDDLVDE-  212 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~---~--~~~~-----------~~~~~~~~~~~~~~~~~-  212 (346)
                      .+.-.++.|+|.|++|+..++.+..+|++ . .++..-+..   .  ....           .....+..+.....++. 
T Consensus       200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~  277 (1042)
T PLN02819        200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA  277 (1042)
T ss_pred             CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence            44567899999999999999999999887 2 222110000   0  0000           00000000000000000 


Q ss_pred             -cC------CcCCHHHHhhcCCEEEEeecCCccccCCCCHH-HHccCCCCc----EEEEcC
Q 019081          213 -KG------CHEDIFEFASKADVVVCCLSLNKQTAGIVNKS-FLSSMKKGS----LLVNIA  261 (346)
Q Consensus       213 -~~------~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~-~l~~mk~ga----ilIN~s  261 (346)
                       +.      ...-+++.++.+|+|+.++...+.+..++.++ ..+.||+|.    +|+++|
T Consensus       278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence             00      01114578899999999998888899999998 777899998    898886

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.94  E-value=0.021  Score=57.11  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=47.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHH-hhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF-ASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el-l~~aDiV~~  231 (346)
                      +++.|+|+|.+|+.+++.|...|++|+++|++.......... .++        .....-. ....++++ +.++|.|++
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-~~~--------~~~~gd~~~~~~l~~~~~~~a~~vi~   71 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-LDV--------RTVVGNGSSPDVLREAGAEDADLLIA   71 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-cCE--------EEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence            378999999999999999999999999999865432110000 000        0000000 12345555 788999999


Q ss_pred             eecCC
Q 019081          232 CLSLN  236 (346)
Q Consensus       232 ~lPlt  236 (346)
                      +++..
T Consensus        72 ~~~~~   76 (453)
T PRK09496         72 VTDSD   76 (453)
T ss_pred             ecCCh
Confidence            98753

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.89  E-value=0.031  Score=58.44  Aligned_cols=97  Identities=21%  Similarity=0.216  Sum_probs=60.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCH---HHH-hhcCCE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI---FEF-ASKADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~aDi  228 (346)
                      ...+.|+|+|++|+.+++.|...|.+++++|.++........  .+          ..--++...+.   +++ +++||.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g----------~~v~~GDat~~~~L~~agi~~A~~  467 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK--YG----------YKVYYGDATQLELLRAAGAEKAEA  467 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--CC----------CeEEEeeCCCHHHHHhcCCccCCE
Confidence            357899999999999999999999999999987653211100  00          00011222232   222 578999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      ++++.+..+.+..++  ...+++.|...+|-.+|.
T Consensus       468 vv~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        468 IVITCNEPEDTMKIV--ELCQQHFPHLHILARARG  500 (601)
T ss_pred             EEEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeCC
Confidence            999998655544432  234445566666554443

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=94.88  E-value=0.031  Score=53.18  Aligned_cols=122  Identities=14%  Similarity=0.143  Sum_probs=65.4

Q ss_pred             EEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhcCCEEEE
Q 019081          156 VFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKADVVVC  231 (346)
Q Consensus       156 vgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aDiV~~  231 (346)
                      |+|||.|.+|..+|..+...|. +|+.+|++.........   .+.  . . ........   ...+.+ .+++||+|++
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~---dl~--~-~-~~~~~~~~~I~~t~d~~-~l~dADiVIi   72 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKAL---DIS--Q-A-APILGSDTKVTGTNDYE-DIAGSDVVVI   72 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHH---HHH--H-h-hhhcCCCeEEEEcCCHH-HhCCCCEEEE
Confidence            5899999999999998875554 99999987542110000   000  0 0 00000001   123554 4899999999


Q ss_pred             eecCCccccCCC-------C-------HHHHccCCCCcEEEEcCCCCCCCHHHHHHHH--HhCCCeEEE--Ee
Q 019081          232 CLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIARGGLLDYEAIAHYL--ECGHLGGLG--ID  286 (346)
Q Consensus       232 ~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~sRg~~vd~~aL~~aL--~~g~i~ga~--lD  286 (346)
                      +.. ++...+.-       |       .+.+....+.+++|+++-..=+-...+.+..  ...++.|.+  ||
T Consensus        73 t~g-~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlgt~ld  144 (300)
T cd01339          73 TAG-IPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLD  144 (300)
T ss_pred             ecC-CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEecchHH
Confidence            774 22222210       0       1123444577888888733323333444432  223566666  55

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06270 homoserine dehydrogenase; Provisional

Probab=94.82  E-value=0.13  Score=50.06  Aligned_cols=125  Identities=22%  Similarity=0.286  Sum_probs=63.7

Q ss_pred             eEEEEecCHHHHHHHHHHccC----------CCEEEEE-cCCCcc---ccccccccchhhhccccccccccccCCcCCHH
Q 019081          155 TVFILGFGNIGVELAKRLRPF----------GVKIIAT-KRSWAS---HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF  220 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~----------G~~V~~~-d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  220 (346)
                      +|||+|+|.||+.+++.+...          +++|.++ |++..-   .......+..+.-..+.+.. ........+++
T Consensus         4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~-~~~~~~~~d~~   82 (341)
T PRK06270          4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD-YPEGGGEISGL   82 (341)
T ss_pred             EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc-CccccccCCHH
Confidence            799999999999999988643          5776654 542110   00000000000000000000 00000123788


Q ss_pred             HHh--hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHHHHHhCCC
Q 019081          221 EFA--SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECGHL  280 (346)
Q Consensus       221 ell--~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g~i  280 (346)
                      +++  .+.|+|+.++|....+...--.-....++.|.-+|-..-+.+ ...++|.++.++...
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~  145 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV  145 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence            888  467999999986543322111122344566665655433333 245677777766544

>PLN02527 aspartate carbamoyltransferase

Probab=94.81  E-value=0.16  Score=48.70  Aligned_cols=98  Identities=26%  Similarity=0.244  Sum_probs=60.1

Q ss_pred             ccCCCeEEEEecC---HHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHH
Q 019081          150 TLLGKTVFILGFG---NIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  221 (346)
Q Consensus       150 ~l~g~tvgIiG~G---~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  221 (346)
                      .+.|++|+++|-+   ++.++++..+..| |++|....|..-..+..            + .+.....+    ...++++
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~------------~-~~~~~~~g~~~~~~~d~~~  214 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDD------------I-KDYLTSKGVEWEESSDLME  214 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHH------------H-HHHHHHcCCEEEEEcCHHH
Confidence            3789999999976   6889999988877 99998877633111100            0 00111111    2468999


Q ss_pred             HhhcCCEEEEeecCCc------c------ccCCCCHHHHccCCCCcEEEEc
Q 019081          222 FASKADVVVCCLSLNK------Q------TAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       222 ll~~aDiV~~~lPlt~------~------T~~li~~~~l~~mk~gailIN~  260 (346)
                      .+++||+|....--.+      .      -...++++.++..|++++|.-+
T Consensus       215 a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc  265 (306)
T PLN02527        215 VASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP  265 (306)
T ss_pred             HhCCCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence            9999999988431100      0      1244555666666666665544

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.79  E-value=0.33  Score=46.09  Aligned_cols=111  Identities=14%  Similarity=0.085  Sum_probs=72.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      |++++|||--.=-..+++.|...|++|..|.-....                   ..+.........++.++++|+|++-
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~i~p   61 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-------------------DGFTGAVKCELLELDLTTLDVVILP   61 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-------------------cccccceeecchhhhhccCCEEEEC
Confidence            689999999999999999999999997766432111                   0011000123455568999999999


Q ss_pred             ecCCcccc----------CCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081          233 LSLNKQTA----------GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  289 (346)
Q Consensus       233 lPlt~~T~----------~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  289 (346)
                      +|.+.+..          --++++.++.|+++++ +-++    ++..++-++.++..|.  ..|.++
T Consensus        62 ~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~  121 (287)
T TIGR02853        62 VPGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE  121 (287)
T ss_pred             CccccCCceEecccccCCccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence            99765421          1257889999998664 4443    4455666567777664  344433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK11579 putative oxidoreductase; Provisional

Probab=94.79  E-value=0.055  Score=52.49  Aligned_cols=66  Identities=14%  Similarity=0.136  Sum_probs=42.3

Q ss_pred             CeEEEEecCHHHHH-HHHHHcc-CCCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCE
Q 019081          154 KTVFILGFGNIGVE-LAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~~l~~-~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  228 (346)
                      -+|||||+|.||+. .+..++. -++++.+ +|++..+..   .             .. .....+.+++++++  +.|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~-------------~~-~~~~~~~~~~ell~~~~vD~   67 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---A-------------DW-PTVTVVSEPQHLFNDPNIDL   67 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---h-------------hC-CCCceeCCHHHHhcCCCCCE
Confidence            38999999999985 4565543 4788765 565432210   0             00 00013478999995  5799


Q ss_pred             EEEeecCC
Q 019081          229 VVCCLSLN  236 (346)
Q Consensus       229 V~~~lPlt  236 (346)
                      |++++|..
T Consensus        68 V~I~tp~~   75 (346)
T PRK11579         68 IVIPTPND   75 (346)
T ss_pred             EEEcCCcH
Confidence            99999853

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.77  E-value=0.025  Score=58.55  Aligned_cols=92  Identities=12%  Similarity=0.215  Sum_probs=55.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC---HHHH-hhcCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-ASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  229 (346)
                      ..+-|+|+|++|+.+|+.|+..|.+|+++|.+++......+  .++          ..-.+...+   ++++ ++++|.+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--~g~----------~~i~GD~~~~~~L~~a~i~~a~~v  485 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--RGI----------RAVLGNAANEEIMQLAHLDCARWL  485 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--CCC----------eEEEcCCCCHHHHHhcCccccCEE
Confidence            45779999999999999999999999999987543211100  000          001112222   2221 4689999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEE
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVN  259 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN  259 (346)
                      ++.++..+++..++-.  ...+.+...+|-
T Consensus       486 iv~~~~~~~~~~iv~~--~~~~~~~~~iia  513 (558)
T PRK10669        486 LLTIPNGYEAGEIVAS--AREKRPDIEIIA  513 (558)
T ss_pred             EEEcCChHHHHHHHHH--HHHHCCCCeEEE
Confidence            9998865554444322  233345555553

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=94.76  E-value=0.46  Score=45.63  Aligned_cols=72  Identities=19%  Similarity=0.220  Sum_probs=48.8

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK  225 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~  225 (346)
                      .+.|++|++||- +++.++++..+..||++|.+..|..-.. .....  .        .+.....+   ...++++.++.
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~-~~~~~--~--------~~~~~~~g~i~~~~d~~~av~~  218 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKE-NIHAQ--T--------VERAKKKGTLSWEMNLHKAVSH  218 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccH-HHHHH--H--------HHHHHhcCCeEEEeCHHHHhCC
Confidence            478999999998 7999999999999999999987643110 00000  0        00001111   13689999999


Q ss_pred             CCEEEEe
Q 019081          226 ADVVVCC  232 (346)
Q Consensus       226 aDiV~~~  232 (346)
                      ||+|..-
T Consensus       219 aDvvy~d  225 (311)
T PRK14804        219 ADYVYTD  225 (311)
T ss_pred             CCEEEee
Confidence            9999884

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.76  E-value=0.093  Score=50.51  Aligned_cols=93  Identities=20%  Similarity=0.249  Sum_probs=58.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh---c
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS---K  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~---~  225 (346)
                      .|++|.|+|.|.+|...++.++..|+ +|++.+++..+......             -.++...  ...++.++..   .
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-------------lGa~~vi~~~~~~~~~~~~~~g~  235 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-------------MGADKLVNPQNDDLDHYKAEKGY  235 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-------------cCCcEEecCCcccHHHHhccCCC
Confidence            58899999999999999999999999 58888876543211000             0000000  1123334332   2


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      .|+|+-++... .    .-...++.+++|..+|.++.
T Consensus       236 ~D~vid~~G~~-~----~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        236 FDVSFEVSGHP-S----SINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CCEEEECCCCH-H----HHHHHHHHhhcCCEEEEEcc
Confidence            68887776421 1    12356677888888888874

>PRK10637 cysG siroheme synthase; Provisional

Probab=94.73  E-value=0.05  Score=55.02  Aligned_cols=97  Identities=13%  Similarity=0.193  Sum_probs=60.9

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      ..+|+|++|.|||.|.++..=++.|..+|++|+++.+...+....      +. ..+.+ .+...    .-.++.+..++
T Consensus         7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~------l~-~~~~i-~~~~~----~~~~~dl~~~~   74 (457)
T PRK10637          7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTA------WA-DAGML-TLVEG----PFDESLLDTCW   74 (457)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH------HH-hCCCE-EEEeC----CCChHHhCCCE
Confidence            467999999999999999998899999999999997754331100      00 00000 11111    11234567888


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +|+.++...     -+|++.....+...+++|++
T Consensus        75 lv~~at~d~-----~~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         75 LAIAATDDD-----AVNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             EEEECCCCH-----HHhHHHHHHHHHcCcEEEEC
Confidence            887776432     25666666666666777763

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=94.70  E-value=0.32  Score=47.62  Aligned_cols=74  Identities=16%  Similarity=0.089  Sum_probs=46.2

Q ss_pred             ccCCCeEEEEecC--------HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcC
Q 019081          150 TLLGKTVFILGFG--------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE  217 (346)
Q Consensus       150 ~l~g~tvgIiG~G--------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  217 (346)
                      .|.|+||+|+|.|        ++.++++..+..||++|....|..-......   ...+      .....+.+    ...
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~---~~~a------~~~~~~~g~~~~~~~  237 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEV---IEVA------KKNAAENGGKFNIVN  237 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHH---HHHH------HHHHHHcCCeEEEEc
Confidence            4789999999853        4557788888899999999876421110000   0000      00011111    247


Q ss_pred             CHHHHhhcCCEEEEe
Q 019081          218 DIFEFASKADVVVCC  232 (346)
Q Consensus       218 ~l~ell~~aDiV~~~  232 (346)
                      ++++.++++|+|..-
T Consensus       238 d~~ea~~~aDvvyt~  252 (357)
T TIGR03316       238 SMDEAFKDADIVYPK  252 (357)
T ss_pred             CHHHHhCCCCEEEEC
Confidence            899999999999875

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.67  E-value=0.022  Score=50.95  Aligned_cols=44  Identities=20%  Similarity=0.403  Sum_probs=37.3

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      |+......|..++|.|+|+|.+|..+++.|...|+ ++..+|...
T Consensus        11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            65444567999999999999999999999999998 588888653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=94.64  E-value=0.32  Score=47.21  Aligned_cols=74  Identities=19%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .+.|.+|++||-+  ++.++++..+..||+++.+..|..-......-   .      ...+.....+    ...++++.+
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~---~------~~~~~~~~~g~~i~~~~d~~ea~  223 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALV---T------ECRALAQKNGGNITLTEDIAEGV  223 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHH---H------HHHHHHHHcCCeEEEEcCHHHHh
Confidence            5889999999976  68999999999999999988764321110000   0      0000011111    247899999


Q ss_pred             hcCCEEEEe
Q 019081          224 SKADVVVCC  232 (346)
Q Consensus       224 ~~aDiV~~~  232 (346)
                      +++|+|..-
T Consensus       224 ~~aDvvytd  232 (336)
T PRK03515        224 KGADFIYTD  232 (336)
T ss_pred             CCCCEEEec
Confidence            999999874

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=94.60  E-value=0.07  Score=51.91  Aligned_cols=30  Identities=20%  Similarity=0.444  Sum_probs=25.1

Q ss_pred             eEEEEecCHHHHHHHHHHcc-CCCEEEEEcC
Q 019081          155 TVFILGFGNIGVELAKRLRP-FGVKIIATKR  184 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~-~G~~V~~~d~  184 (346)
                      +|||+|+|+||+.+++.+.. -++++.+...
T Consensus         3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d   33 (341)
T PRK04207          3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAK   33 (341)
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCcEEEEEEC
Confidence            79999999999999998764 4788877543

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.59  E-value=0.13  Score=51.44  Aligned_cols=72  Identities=13%  Similarity=0.113  Sum_probs=52.7

Q ss_pred             ccccCCCeEEEEec----------CHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCc
Q 019081          148 GETLLGKTVFILGF----------GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH  216 (346)
Q Consensus       148 ~~~l~g~tvgIiG~----------G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (346)
                      +.++.|++|+|+|+          ..-+..+++.|+..| .+|.+||+......                 .........
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~-----------------~~~~~~~~~  377 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLP-----------------KKLDGLVTL  377 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchh-----------------hhccCceee
Confidence            46789999999998          456789999999996 99999998643210                 000000123


Q ss_pred             CCHHHHhhcCCEEEEeecCC
Q 019081          217 EDIFEFASKADVVVCCLSLN  236 (346)
Q Consensus       217 ~~l~ell~~aDiV~~~lPlt  236 (346)
                      .++++.++.||+|+++.+..
T Consensus       378 ~~~~~~~~~ad~vvi~t~~~  397 (415)
T PRK11064        378 VSLDEALATADVLVMLVDHS  397 (415)
T ss_pred             CCHHHHHhCCCEEEECCCCH
Confidence            57889999999999998753

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=94.55  E-value=0.063  Score=49.03  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=34.9

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .-.+.|++|.|||.|.++..=++.|..+|++|+++.+...
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~   59 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS   59 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            3467799999999999999988889899999999987654

>PRK08223 hypothetical protein; Validated

Probab=94.54  E-value=0.078  Score=50.24  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~  185 (346)
                      ...|+.++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus        22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            356899999999999999999999998888 57777754

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.51  E-value=0.13  Score=48.49  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      ++++.|+|.|..+++++..|+..|+ +|.+++|+..+
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~  158 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKT  158 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence            4689999999999999999999998 59999997643

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.47  E-value=0.089  Score=51.19  Aligned_cols=98  Identities=26%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             CeEEEEec-CHHHHHHHHHHccC-CCEEEE-EcCCCccccccccccchhhhccccccccccc-cCCcCCHHH-HhhcCCE
Q 019081          154 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFE-FASKADV  228 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~e-ll~~aDi  228 (346)
                      .+|+|+|. |.+|+.+++.+... ++++.. .++..... ....   .+.       ..... .....++++ ...++|+
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~-~l~~---~~~-------~~~~~~~~~~~~~~~~~~~~vD~   71 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGK-PLSD---VHP-------HLRGLVDLVLEPLDPEILAGADV   71 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCc-chHH---hCc-------ccccccCceeecCCHHHhcCCCE
Confidence            58999997 99999999999876 678655 44322110 0000   000       00000 001222222 4578999


Q ss_pred             EEEeecCCccccCCCCHHHHcc-CCCCcEEEEcCCCCCCCH
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIARGGLLDY  268 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~-mk~gailIN~sRg~~vd~  268 (346)
                      |++|+|....      .+.... .+.|..+|+.|-.=-.+.
T Consensus        72 Vf~alP~~~~------~~~v~~a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         72 VFLALPHGVS------MDLAPQLLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             EEECCCcHHH------HHHHHHHHhCCCEEEECCcccCCCC
Confidence            9999985321      222222 357899999984443433

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.47  E-value=0.12  Score=49.42  Aligned_cols=94  Identities=19%  Similarity=0.247  Sum_probs=57.6

Q ss_pred             EEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccc--cC---CcCCHHHHhhcCCE
Q 019081          156 VFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KG---CHEDIFEFASKADV  228 (346)
Q Consensus       156 vgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~l~ell~~aDi  228 (346)
                      ++|||.|.+|..+|..+...|  -++..+|++...........          .+....  ..   ...+ .+.+++||+
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL----------~~~~~~~~~~~i~~~~~-~~~l~~aDi   69 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDL----------SHASAFLATGTIVRGGD-YADAADADI   69 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhH----------HHhccccCCCeEEECCC-HHHhCCCCE
Confidence            589999999999999988777  58999998654321111000          011100  00   1133 467899999


Q ss_pred             EEEeecCCccccCCC-------C-------HHHHccCCCCcEEEEcC
Q 019081          229 VVCCLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       229 V~~~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~s  261 (346)
                      |+++... +...++-       |       ...++...|++++|+++
T Consensus        70 VIitag~-p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          70 VVITAGA-PRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             EEEcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            9998863 3333321       1       12334445899999997

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.38  E-value=0.19  Score=50.40  Aligned_cols=96  Identities=19%  Similarity=0.222  Sum_probs=61.9

Q ss_pred             ccccCCCeEEEEec----------CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcC
Q 019081          148 GETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE  217 (346)
Q Consensus       148 ~~~l~g~tvgIiG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (346)
                      +..+.|++|+|+|+          ..-+..+++.|...|.+|.+||+.......                  ....+ ..
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~------------------~~~~~-~~  369 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEV------------------RREYG-II  369 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHH------------------HHhcC-cc
Confidence            45689999999999          456889999999999999999986432100                  00001 11


Q ss_pred             CHHH-HhhcCCEEEEeecCCccccCCCCHHHHc-cCCCCcEEEEcCCCCC
Q 019081          218 DIFE-FASKADVVVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGL  265 (346)
Q Consensus       218 ~l~e-ll~~aDiV~~~lPlt~~T~~li~~~~l~-~mk~gailIN~sRg~~  265 (346)
                      .+++ .+..||+|+++..-.+ -+. ++-+.+. .||...++|++ |+-+
T Consensus       370 ~~~~~~~~~ad~vvi~t~h~~-f~~-~~~~~~~~~~~~~~~iiD~-r~~~  416 (425)
T PRK15182        370 PVSEVKSSHYDAIIVAVGHQQ-FKQ-MGSEDIRGFGKDKHVLYDL-KYVL  416 (425)
T ss_pred             cchhhhhcCCCEEEEccCCHH-hhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence            1222 3678999999987432 222 4545444 45545688884 5554

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=94.35  E-value=0.41  Score=46.42  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=61.7

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .+.|++|++||-+  ++.++++..+..||++|...-|..-.......   ..      ++......+    ...++++.+
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~---~~------~~~~~~~~g~~~~~~~d~~ea~  222 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELL---NK------CKEIAAETGGKITITDDIDEGV  222 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHH---HH------HHHHHHHcCCeEEEEcCHHHHh
Confidence            4789999999975  88999999999999999988764221110000   00      000001111    247899999


Q ss_pred             hcCCEEEEeecCC--c-----------cccCCCCHHHHccCC-CCcEEEEc
Q 019081          224 SKADVVVCCLSLN--K-----------QTAGIVNKSFLSSMK-KGSLLVNI  260 (346)
Q Consensus       224 ~~aDiV~~~lPlt--~-----------~T~~li~~~~l~~mk-~gailIN~  260 (346)
                      ++||+|..-.=..  .           .-...++++.++.+| |+++|.-+
T Consensus       223 ~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp  273 (332)
T PRK04284        223 KGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC  273 (332)
T ss_pred             CCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence            9999998842100  0           023445666666664 46666555

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=94.22  E-value=1.1  Score=43.40  Aligned_cols=74  Identities=15%  Similarity=-0.004  Sum_probs=46.2

Q ss_pred             c-CCCeEEEEecC-------HHHHHHHHHHccCCCEEEEEcC-CCccccccccccchhhhccccccccccccC----CcC
Q 019081          151 L-LGKTVFILGFG-------NIGVELAKRLRPFGVKIIATKR-SWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE  217 (346)
Q Consensus       151 l-~g~tvgIiG~G-------~IG~~vA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  217 (346)
                      + .|++|+|+|.|       ++.++++..+..||++|.+..| ..-........ .        ..+.....+    ...
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~-~--------~~~~~~~~g~~~~~~~  236 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMD-W--------AEQNAAESGGSLTVSH  236 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHH-H--------HHHHHHHcCCeEEEEc
Confidence            6 78999887643       7888999999999999999876 32111000000 0        000011111    247


Q ss_pred             CHHHHhhcCCEEEEee
Q 019081          218 DIFEFASKADVVVCCL  233 (346)
Q Consensus       218 ~l~ell~~aDiV~~~l  233 (346)
                      ++++.+++||+|..-.
T Consensus       237 d~~ea~~~aDvvy~~~  252 (335)
T PRK04523        237 DIDSAYAGADVVYAKS  252 (335)
T ss_pred             CHHHHhCCCCEEEece
Confidence            8999999999997743

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.14  E-value=0.058  Score=56.66  Aligned_cols=93  Identities=16%  Similarity=0.168  Sum_probs=57.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH----hhcCCE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----ASKADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDi  228 (346)
                      ..+|-|+|+|++|+.+++.|...|.+++++|.++.......+  .+          ..--++...+.+-+    ++++|.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--~g----------~~v~~GDat~~~~L~~agi~~A~~  467 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--FG----------MKVFYGDATRMDLLESAGAAKAEV  467 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--cC----------CeEEEEeCCCHHHHHhcCCCcCCE
Confidence            467999999999999999999999999999987653211100  00          00011222333222    468999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEE
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN  259 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN  259 (346)
                      |+++++..+.+..+  -...+++.|+..++-
T Consensus       468 vvv~~~d~~~n~~i--~~~ar~~~p~~~iia  496 (621)
T PRK03562        468 LINAIDDPQTSLQL--VELVKEHFPHLQIIA  496 (621)
T ss_pred             EEEEeCCHHHHHHH--HHHHHHhCCCCeEEE
Confidence            99999765544333  233444555655544

>PRK08328 hypothetical protein; Provisional

Probab=94.13  E-value=0.055  Score=49.68  Aligned_cols=44  Identities=30%  Similarity=0.442  Sum_probs=36.4

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      |+......|.+++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus        17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            54433467899999999999999999999999998 588888643

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.12  E-value=0.063  Score=53.82  Aligned_cols=37  Identities=41%  Similarity=0.602  Sum_probs=34.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .+.+|++.|+|.|.+|.++|+.|...|++|+++|+..
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4679999999999999999999999999999999864

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.07  E-value=0.074  Score=53.24  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ++.||++.|+|.|.+|.++|+.|+..|++|.+.|+..
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3678999999999999999999999999999999754

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.01  E-value=0.073  Score=46.66  Aligned_cols=32  Identities=28%  Similarity=0.295  Sum_probs=28.4

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      +|+|+|+|.+|..+++.|...|+ ++..+|...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999998898 499988754

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=94.00  E-value=0.93  Score=44.00  Aligned_cols=102  Identities=14%  Similarity=0.086  Sum_probs=62.2

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .+.|.+|+++|-+  ++.++++..+..+|++|.+..|..-........        . +.+.....+    ...++++.+
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~--------~-~~~~~~~~g~~~~~~~d~~~a~  223 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVA--------E-CSALAQKHGGKITLTEDIAAGV  223 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHH--------H-HHHHHHHcCCeEEEEcCHHHHh
Confidence            5789999999975  789999999999999999887643111000000        0 000111111    237899999


Q ss_pred             hcCCEEEEeec----C-Cc--------cccCCCCHHHHccC-CCCcEEEEc
Q 019081          224 SKADVVVCCLS----L-NK--------QTAGIVNKSFLSSM-KKGSLLVNI  260 (346)
Q Consensus       224 ~~aDiV~~~lP----l-t~--------~T~~li~~~~l~~m-k~gailIN~  260 (346)
                      +++|+|..-.=    . .+        --..-++.+.++.. |++++|.-+
T Consensus       224 ~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc  274 (334)
T PRK12562        224 KGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC  274 (334)
T ss_pred             CCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence            99999987430    0 00        01344566666664 566666655

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.99  E-value=0.099  Score=39.30  Aligned_cols=33  Identities=36%  Similarity=0.530  Sum_probs=30.1

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++.|||.|.+|-.+|..++.+|.+|+.+++...
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            578999999999999999999999999988654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.99  E-value=0.12  Score=52.27  Aligned_cols=112  Identities=15%  Similarity=0.149  Sum_probs=63.2

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      -.|++|+|+|+|.-|+++|+.|+. |++|+++|........  .            ............-.+.+.++|+|+
T Consensus         4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~d~vV   68 (454)
T PRK01368          4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDI--F------------EELYSKNAIAALSDSRWQNLDKIV   68 (454)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHH--H------------HhhhcCceeccCChhHhhCCCEEE
Confidence            358899999999999999999996 9999999954322100  0            000000000011234567899887


Q ss_pred             Eee--cCCcc--------ccCCCCHHHH--ccCCCC-cEEEEcCCCCCCCHHHHHHHHHh
Q 019081          231 CCL--SLNKQ--------TAGIVNKSFL--SSMKKG-SLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       231 ~~l--Plt~~--------T~~li~~~~l--~~mk~g-ailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      ..-  |.+..        ...++++-.|  ..+++. .+=|-=+.|..-...=|...|+.
T Consensus        69 ~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~  128 (454)
T PRK01368         69 LSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS  128 (454)
T ss_pred             ECCCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            743  22211        1124444433  233322 33344457877777777777775

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=93.97  E-value=0.073  Score=50.97  Aligned_cols=66  Identities=21%  Similarity=0.249  Sum_probs=44.6

Q ss_pred             CeEEEEecCHHHH-HHHHHHccCC--CEE-EEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhc-
Q 019081          154 KTVFILGFGNIGV-ELAKRLRPFG--VKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK-  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~-~vA~~l~~~G--~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~-  225 (346)
                      .++||||+|.+++ ..+..++..+  +++ -++|++..+..                 .....++   .+.+++++++. 
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~-----------------~~a~~~~~~~~~~~~~~ll~~~   66 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAE-----------------AFAEEFGIAKAYTDLEELLADP   66 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCC
Confidence            4899999997775 4777777765  454 45577654321                 1122222   35789999976 


Q ss_pred             -CCEEEEeecCC
Q 019081          226 -ADVVVCCLSLN  236 (346)
Q Consensus       226 -aDiV~~~lPlt  236 (346)
                       -|+|++++|..
T Consensus        67 ~iD~V~Iatp~~   78 (342)
T COG0673          67 DIDAVYIATPNA   78 (342)
T ss_pred             CCCEEEEcCCCh
Confidence             59999999954

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.95  E-value=0.066  Score=51.78  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      .|++|.|+|.|.||...++.++..|++|++++++
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~  205 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR  205 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            5789999999999999999999999999999874

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.93  E-value=0.24  Score=47.47  Aligned_cols=124  Identities=18%  Similarity=0.246  Sum_probs=65.1

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  229 (346)
                      ++|+|+|. |.+|..++..+...|.  +|+.+|+...........   ....+........ ......+. +.+++||+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~---~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiV   76 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLR---LDIYDALAAAGIDAEIKISSDL-SDVAGSDIV   76 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECccccccccccc---chhhhchhccCCCcEEEECCCH-HHhCCCCEE
Confidence            47999998 9999999999987775  599999843111000000   0000000000000 00011344 459999999


Q ss_pred             EEeecCCccccCCC-------C-------HHHHccCCCCcEEEEcCCCCCCCHHHHHHH----HHhCCCeEEE
Q 019081          230 VCCLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIARGGLLDYEAIAHY----LECGHLGGLG  284 (346)
Q Consensus       230 ~~~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~sRg~~vd~~aL~~a----L~~g~i~ga~  284 (346)
                      +++... +...+.-       |       ...+....+++++|+++  ..+|.-..+-.    +..+++-|.+
T Consensus        77 iitag~-p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g  146 (309)
T cd05294          77 IITAGV-PRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG  146 (309)
T ss_pred             EEecCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence            998863 2222211       0       11244445678888886  55554432221    3345666653

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.87  E-value=0.27  Score=44.54  Aligned_cols=98  Identities=28%  Similarity=0.369  Sum_probs=58.3

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH-----hhc
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-----ASK  225 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~  225 (346)
                      ..|++|.|+|.|.+|+.+++.++..|.+|++.+++........ .   +    + .....+.  ...+..+.     -..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~---~----g-~~~~~~~--~~~~~~~~~~~~~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAK-E---L----G-ADHVIDY--KEEDLEEELRLTGGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-H---h----C-CceeccC--CcCCHHHHHHHhcCCC
Confidence            3578999999999999999999999999999987643210000 0   0    0 0000000  00111111     135


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      .|+++.+++...     .-...++.|+++..+++.+...
T Consensus       202 ~d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         202 ADVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             CCEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCC
Confidence            788887765321     1244567788888888876554

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.86  E-value=0.1  Score=52.20  Aligned_cols=38  Identities=37%  Similarity=0.336  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+..+++.|+|+|.+|+.+++.|...|.+|+++|+++.
T Consensus       228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            34578999999999999999999999999999998754

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.82  E-value=0.1  Score=49.57  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS  185 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~  185 (346)
                      .|+++.|+|.|.||...++.++.+|++ |++.|++
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~  178 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN  178 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence            477899999999999999999999998 5556654

>PRK04148 hypothetical protein; Provisional

Probab=93.79  E-value=0.089  Score=44.19  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=31.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .++++..||+| -|..+|+.|+..|++|+++|.++.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            46789999999 999999999999999999998765

>PLN00106 malate dehydrogenase

Probab=93.77  E-value=0.22  Score=48.12  Aligned_cols=106  Identities=16%  Similarity=0.103  Sum_probs=61.1

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      ..++|+|+|. |+||..+|..|..  +.-++..+|.+... ....+.  ...    .............++.+.+++||+
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~Dl--~~~----~~~~~i~~~~~~~d~~~~l~~aDi   89 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAADV--SHI----NTPAQVRGFLGDDQLGDALKGADL   89 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEchh--hhC----CcCceEEEEeCCCCHHHHcCCCCE
Confidence            3469999999 9999999998874  44489999986621 111000  000    000000000123466789999999


Q ss_pred             EEEeecCCccccCC-----C--C----H---HHHccCCCCcEEEEcCCCCC
Q 019081          229 VVCCLSLNKQTAGI-----V--N----K---SFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       229 V~~~lPlt~~T~~l-----i--~----~---~~l~~mk~gailIN~sRg~~  265 (346)
                      |+++.-. +...+.     +  |    +   +.+....+.+++|+++-.--
T Consensus        90 VVitAG~-~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD  139 (323)
T PLN00106         90 VIIPAGV-PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN  139 (323)
T ss_pred             EEEeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            9987543 221121     1  1    1   22334458899999975543

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.76  E-value=1.1  Score=46.46  Aligned_cols=200  Identities=16%  Similarity=0.178  Sum_probs=121.3

Q ss_pred             hCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHcc--
Q 019081           97 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP--  174 (346)
Q Consensus        97 ~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~--  174 (346)
                      +..|.+.|.-=      ..+|-.+++.+|+.+|-.                +..|.+.++.|+|.|..|-.+|+.+..  
T Consensus       287 r~~i~~FnDDi------QGTaaV~lAgll~A~r~~----------------g~~l~d~riv~~GAGsAgigia~ll~~~~  344 (581)
T PLN03129        287 RTTHLCFNDDI------QGTAAVALAGLLAALRAT----------------GGDLADQRILFAGAGEAGTGIAELIALAM  344 (581)
T ss_pred             ccCCCEecccc------chHHHHHHHHHHHHHHHh----------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence            56888888632      456777888888888742                578999999999999999999998876  


Q ss_pred             ---CCC-------EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc--CCEEEEeecCCccccCC
Q 019081          175 ---FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       175 ---~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~~~lPlt~~T~~l  242 (346)
                         .|.       +++.+|+..--..........+  +    ..++.......+|.|+++.  .|+++-.-    ...|+
T Consensus       345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~--k----~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~  414 (581)
T PLN03129        345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPF--K----KPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGT  414 (581)
T ss_pred             HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHH--H----HHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCC
Confidence               476       7888887642110000000000  0    0111111124689999998  89988742    23479


Q ss_pred             CCHHHHccCC---CCcEEEEcCCCCCCCHHHHHHHHH--hCC-CeEEEEecCCCCCCCC---CCC---CCCCCceEEccC
Q 019081          243 VNKSFLSSMK---KGSLLVNIARGGLLDYEAIAHYLE--CGH-LGGLGIDVAWTEPFDP---NDP---ILKFKNVLITPH  310 (346)
Q Consensus       243 i~~~~l~~mk---~gailIN~sRg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EPl~~---~~p---L~~~~nviiTPH  310 (346)
                      |+++.++.|.   +..++.=.|...---|-.-.+|.+  +|+ |.+.|      -|+++   +..   -=..-|+++-|=
T Consensus       415 Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtG------SPf~pv~~~Gr~~~p~Q~NN~~iFPG  488 (581)
T PLN03129        415 FTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASG------SPFDPVEYNGKTFHPGQANNAYIFPG  488 (581)
T ss_pred             CCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeC------CCCCCeeeCCeeecCccccceeeccc
Confidence            9999999995   889999988776433333333333  355 43332      23222   111   113568888887


Q ss_pred             CCCC-----cHHHHHHHHHHHHHHHHHHH
Q 019081          311 VGGV-----TEHSYRSMAKVVGDVALQLH  334 (346)
Q Consensus       311 ~a~~-----t~~~~~~~~~~~~~ni~~~~  334 (346)
                      ++-.     .......|...+++.|-.+.
T Consensus       489 iglGal~~~a~~Itd~m~~aAA~aLA~~v  517 (581)
T PLN03129        489 IGLGALLSGAIRVTDDMLLAAAEALAAQV  517 (581)
T ss_pred             hhhHHHhcCCcCCCHHHHHHHHHHHHHhC
Confidence            7632     11222455555555555544

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=93.71  E-value=0.063  Score=59.19  Aligned_cols=77  Identities=21%  Similarity=0.311  Sum_probs=45.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccC-CCE-------------EEEEcCCCccccccccccchhhhccccccccccc-cCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPF-GVK-------------IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCH  216 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~-G~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  216 (346)
                      ..|+|+|||.|.||+..|+.|... +.+             |.+.|++..........   +  ++   ...... ....
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~---~--~~---~~~v~lDv~D~  639 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEG---I--EN---AEAVQLDVSDS  639 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHh---c--CC---CceEEeecCCH
Confidence            477999999999999999999653 333             78888765432110000   0  00   000000 0112


Q ss_pred             CCHHHHhhcCCEEEEeecCC
Q 019081          217 EDIFEFASKADVVVCCLSLN  236 (346)
Q Consensus       217 ~~l~ell~~aDiV~~~lPlt  236 (346)
                      .++.++++++|+|++++|..
T Consensus       640 e~L~~~v~~~DaVIsalP~~  659 (1042)
T PLN02819        640 ESLLKYVSQVDVVISLLPAS  659 (1042)
T ss_pred             HHHHHhhcCCCEEEECCCch
Confidence            33445557899999999963

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=93.70  E-value=0.065  Score=44.63  Aligned_cols=35  Identities=40%  Similarity=0.582  Sum_probs=30.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCc
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~  187 (346)
                      .++|.|+|+|.+|..+|+.|...|+ ++..+|...-
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV   37 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence            5799999999999999999998898 6999997543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.70  E-value=0.083  Score=53.62  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=34.7

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ..+.+++|.|+|+|.+|+++|+.|+..|++|.++|+..
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            45788999999999999999999999999999999753

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.64  E-value=0.088  Score=53.72  Aligned_cols=37  Identities=24%  Similarity=0.474  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ++.++++.|+|+|..|.++|+.|+..|++|.++|...
T Consensus         4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            3568899999999999999999999999999999754

>PRK14851 hypothetical protein; Provisional

Probab=93.63  E-value=0.17  Score=53.59  Aligned_cols=182  Identities=16%  Similarity=0.106  Sum_probs=93.7

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccc------cchhh----hc------cccc-ccc
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ------SSALA----VK------NGII-DDL  209 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~------~~~~~----~~------~~~~-~~~  209 (346)
                      ...|++++|+|+|+|.+|..+|..|...|. ++..+|...-....-.++      +.+..    .+      +-.+ ...
T Consensus        38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~  117 (679)
T PRK14851         38 QERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITP  117 (679)
T ss_pred             HHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEE
Confidence            457899999999999999999999998887 577766432111000000      00000    00      0000 000


Q ss_pred             ccccCCcCCHHHHhhcCCEEEEeecC-CccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH-hCCCeEEEEec
Q 019081          210 VDEKGCHEDIFEFASKADVVVCCLSL-NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE-CGHLGGLGIDV  287 (346)
Q Consensus       210 ~~~~~~~~~l~ell~~aDiV~~~lPl-t~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~-~g~i~ga~lDV  287 (346)
                      ........+++++++.+|+|+.++-. +-+++.+++....   +.+.-+|..+-.+.--  .+. ... .|..   .-|.
T Consensus       118 ~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~---~~~iP~i~~g~~G~~g--~~~-~~~p~~~~---~~~~  188 (679)
T PRK14851        118 FPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR---EKGIPVITAGPLGYSS--AML-VFTPQGMG---FDDY  188 (679)
T ss_pred             EecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH---HCCCCEEEeecccccc--eEE-EEcCCCCC---HhHh
Confidence            00111234567888889998877632 1134445554332   2344455543100000  000 000 0000   0112


Q ss_pred             CCC-----------------CCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 019081          288 AWT-----------------EPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTP  338 (346)
Q Consensus       288 ~~~-----------------EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~  338 (346)
                      |+-                 .|-+..+..++..+|=++.+-+-++.-.-..+...+.....+++.|+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (679)
T PRK14851        189 FNIGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGKG  256 (679)
T ss_pred             ccCCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcCC
Confidence            222                 233334455577788888888888777777777788877777776553

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.50  E-value=0.18  Score=48.61  Aligned_cols=91  Identities=12%  Similarity=0.128  Sum_probs=54.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHcc-CC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KAD  227 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aD  227 (346)
                      .|.+|.|+|.|.||...++.++. +| .+|++++++..+..                  .+...+.....+++.+  ..|
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~------------------~a~~~~~~~~~~~~~~~~g~d  224 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD------------------LFSFADETYLIDDIPEDLAVD  224 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHH------------------HHhhcCceeehhhhhhccCCc
Confidence            47899999999999999988875 54 68999987654311                  1111110001112212  368


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      +|+-++... .+...+ ...++.++++..++.++-
T Consensus       225 ~viD~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         225 HAFECVGGR-GSQSAI-NQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             EEEECCCCC-ccHHHH-HHHHHhCcCCcEEEEEee
Confidence            887776521 011111 345677888888887763

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.45  E-value=0.18  Score=49.61  Aligned_cols=89  Identities=22%  Similarity=0.283  Sum_probs=58.3

Q ss_pred             cCCCeEEEEecC----------HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHH
Q 019081          151 LLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF  220 (346)
Q Consensus       151 l~g~tvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  220 (346)
                      |.|||+||+|+-          .-...++++|+..|++|.+|||.......                .......-..+++
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~----------------~~~~~~~~~~~~~  371 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAF----------------RNFPDVELESDAE  371 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHH----------------hcCCCceEeCCHH
Confidence            899999999984          34678899999999999999985433110                0000001236899


Q ss_pred             HHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEE
Q 019081          221 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN  259 (346)
Q Consensus       221 ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN  259 (346)
                      ++++.||+++++... ++-+.+ +-+.+ .|| +.++++
T Consensus       372 ~~~~~aDaivi~tew-~ef~~~-d~~~~-~m~-~~~v~D  406 (414)
T COG1004         372 EALKGADAIVINTEW-DEFRDL-DFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHHhhCCEEEEeccH-HHHhcc-Chhhh-hcc-CCEEEe
Confidence            999999999998642 233333 33333 565 444544

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.42  E-value=0.099  Score=52.72  Aligned_cols=36  Identities=33%  Similarity=0.517  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      .+.|++|.|+|+|.+|.++|+.|+..|++|.++|..
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence            467899999999999999999999999999999965

>PTZ00325 malate dehydrogenase; Provisional

Probab=93.36  E-value=0.28  Score=47.31  Aligned_cols=108  Identities=18%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHc--cCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLR--PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~--~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      -+..++|+|+|. |.||..+|..+.  ...-++..+|+.... ....+.  .    +..............+..+.++.|
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~-g~a~Dl--~----~~~~~~~v~~~td~~~~~~~l~ga   77 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP-GVAADL--S----HIDTPAKVTGYADGELWEKALRGA   77 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc-ccccch--h----hcCcCceEEEecCCCchHHHhCCC
Confidence            456779999999 999999999888  455689999983211 100000  0    000000000000112336789999


Q ss_pred             CEEEEeecCCccccC-----CCC------HHHHcc---CCCCcEEEEcCCCCC
Q 019081          227 DVVVCCLSLNKQTAG-----IVN------KSFLSS---MKKGSLLVNIARGGL  265 (346)
Q Consensus       227 DiV~~~lPlt~~T~~-----li~------~~~l~~---mk~gailIN~sRg~~  265 (346)
                      |+|++++-.. ...+     ++.      +..+..   -.+.++++.++-+--
T Consensus        78 DvVVitaG~~-~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvd  129 (321)
T PTZ00325         78 DLVLICAGVP-RKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN  129 (321)
T ss_pred             CEEEECCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH
Confidence            9999876532 2211     221      122333   356778888865443

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.25  E-value=0.093  Score=53.21  Aligned_cols=116  Identities=22%  Similarity=0.164  Sum_probs=66.3

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      +.||+|+|+|+|.-|+++|+.|+..|++|+++|.+..........   +       ......... ....+.+.++|+|+
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~---l-------~~~~~~~~~-~~~~~~~~~~d~vV   74 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGA---L-------ADAALLVET-EASAQRLAAFDVVV   74 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHH---H-------hhcCEEEeC-CCChHHccCCCEEE
Confidence            568999999999999999999999999999999643321100000   0       000000001 11235567899887


Q ss_pred             Eee--cCCcc--------ccCCCCHHHH--cc-CC-----CCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          231 CCL--SLNKQ--------TAGIVNKSFL--SS-MK-----KGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       231 ~~l--Plt~~--------T~~li~~~~l--~~-mk-----~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      ..-  |.+..        ...++++-.|  .. ++     ...+-|-=+.|..-...-+.+.|+.
T Consensus        75 ~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~  139 (468)
T PRK04690         75 KSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA  139 (468)
T ss_pred             ECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            743  32211        1124554443  33 32     1244455467777777767777764

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.22  E-value=0.45  Score=45.72  Aligned_cols=98  Identities=18%  Similarity=0.167  Sum_probs=58.6

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccc-ccCC--c-CCHHHHhhcC
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGC--H-EDIFEFASKA  226 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-~~l~ell~~a  226 (346)
                      .+|+|||. |.+|..+|-.+...|.  ++..+|.+ .......+.  .        +.... ....  . .++.+.+++|
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL--~--------~~~~~~~i~~~~~~~~~y~~~~da   69 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADL--S--------HINTPAKVTGYLGPEELKKALKGA   69 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHh--H--------hCCCcceEEEecCCCchHHhcCCC
Confidence            37999999 9999999999886664  79999987 221111110  0        00000 0001  1 2456788999


Q ss_pred             CEEEEeecCCccccCC-----C--CH-------HHHccCCCCcEEEEcCCC
Q 019081          227 DVVVCCLSLNKQTAGI-----V--NK-------SFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       227 DiV~~~lPlt~~T~~l-----i--~~-------~~l~~mk~gailIN~sRg  263 (346)
                      |+|+++.-. +...++     +  |.       +.+..-.|.+++||++-.
T Consensus        70 DivvitaG~-~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          70 DVVVIPAGV-PRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CEEEEeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            999987643 222222     1  11       234444689999999544

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.17  E-value=0.19  Score=46.87  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=31.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~  186 (346)
                      .|++|.|+|.|.||...++.++.+|.+ |++.+++.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~  155 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP  155 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            688999999999999999999999997 88887654

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK10206 putative oxidoreductase; Provisional

Probab=93.04  E-value=0.16  Score=49.34  Aligned_cols=64  Identities=14%  Similarity=0.183  Sum_probs=40.5

Q ss_pred             eEEEEecCHHHHH-HHHHH-cc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--c
Q 019081          155 TVFILGFGNIGVE-LAKRL-RP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--K  225 (346)
Q Consensus       155 tvgIiG~G~IG~~-vA~~l-~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~  225 (346)
                      ++||||+|.|++. .+..+ .. -++++. ++|++.... .                 ....++   .+.+++++++  +
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~-----------------~~~~~~~~~~~~~~~ell~~~~   64 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-E-----------------QAPIYSHIHFTSDLDEVLNDPD   64 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-H-----------------HHHhcCCCcccCCHHHHhcCCC
Confidence            7999999998864 34433 32 367876 477654221 0                 111111   3468999995  5


Q ss_pred             CCEEEEeecCC
Q 019081          226 ADVVVCCLSLN  236 (346)
Q Consensus       226 aDiV~~~lPlt  236 (346)
                      .|+|++++|..
T Consensus        65 iD~V~I~tp~~   75 (344)
T PRK10206         65 VKLVVVCTHAD   75 (344)
T ss_pred             CCEEEEeCCch
Confidence            79999999854

>cd00704 MDH Malate dehydrogenase

Probab=93.01  E-value=0.88  Score=43.95  Aligned_cols=108  Identities=18%  Similarity=0.107  Sum_probs=63.6

Q ss_pred             eEEEEec-CHHHHHHHHHHccCCC-------EEEEEcCCC--ccccccccccchhhhcccccccccccc------C-CcC
Q 019081          155 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSW--ASHSQVSCQSSALAVKNGIIDDLVDEK------G-CHE  217 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~  217 (346)
                      +|+|+|. |.||..+|..+...|.       ++..+|++.  .......             .++.+..      . -..
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~-------------~Dl~d~~~~~~~~~~i~~   68 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVV-------------MELQDCAFPLLKGVVITT   68 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceee-------------eehhhhcccccCCcEEec
Confidence            7999999 9999999998875442       588999865  2211100             0111110      0 014


Q ss_pred             CHHHHhhcCCEEEEeecCCccccCCC-------C-------HHHHccC-CCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          218 DIFEFASKADVVVCCLSLNKQTAGIV-------N-------KSFLSSM-KKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       218 ~l~ell~~aDiV~~~lPlt~~T~~li-------~-------~~~l~~m-k~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +..+.+++||+|++..- .+...++-       |       ...++.. +|++++|.++  ..+|.-.-+-.-.+|
T Consensus        69 ~~~~~~~~aDiVVitAG-~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~k~sg  141 (323)
T cd00704          69 DPEEAFKDVDVAILVGA-FPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALIALKNAP  141 (323)
T ss_pred             ChHHHhCCCCEEEEeCC-CCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHHHHHHcC
Confidence            56788999999998653 23333321       1       1234445 5888999885  666654444333333

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=92.99  E-value=0.25  Score=48.05  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=31.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .|++|.|.|.|.||...++.++.+|.+|++.+.+.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~  217 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS  217 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            57899999999999999999999999998877654

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=92.89  E-value=0.12  Score=51.53  Aligned_cols=30  Identities=23%  Similarity=0.386  Sum_probs=26.4

Q ss_pred             CeEEEEecCHHHHHHHHHHcc-CCCEEEEEc
Q 019081          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATK  183 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~-~G~~V~~~d  183 (346)
                      .+|||.|||+|||.+++.+.. ++++|++++
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaIN  116 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVN  116 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEec
Confidence            489999999999999999874 899988854

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=92.87  E-value=0.1  Score=47.16  Aligned_cols=73  Identities=19%  Similarity=0.246  Sum_probs=48.0

Q ss_pred             EEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEEee
Q 019081          156 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       156 vgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      |.|+|. |.+|+.+++.|..-|++|.+.-|+..+.........+        ...+. .+...++|.+.++.+|.|++++
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g--------~~vv~~d~~~~~~l~~al~g~d~v~~~~   72 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALG--------AEVVEADYDDPESLVAALKGVDAVFSVT   72 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTT--------TEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhccc--------ceEeecccCCHHHHHHHHcCCceEEeec
Confidence            578896 9999999999999999999988865321110000000        01110 0113467888999999999999


Q ss_pred             cCC
Q 019081          234 SLN  236 (346)
Q Consensus       234 Plt  236 (346)
                      |..
T Consensus        73 ~~~   75 (233)
T PF05368_consen   73 PPS   75 (233)
T ss_dssp             SCS
T ss_pred             Ccc
Confidence            954

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=92.85  E-value=3.8  Score=42.35  Aligned_cols=227  Identities=10%  Similarity=0.071  Sum_probs=133.1

Q ss_pred             hcCCCCeEEEEcCccCCc-cchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccc
Q 019081           72 SRANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET  150 (346)
Q Consensus        72 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~  150 (346)
                      ...|+ -+|+.-=-|..+ +.+..--+..|.+.|.-=      +.+|-.+++.+|+.+|-.                +..
T Consensus       238 ~~~P~-~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDi------QGTaaV~lAgll~Alr~~----------------g~~  294 (559)
T PTZ00317        238 SRWPN-AVVQFEDFSNNHCFDLLERYQNKYRCFNDDI------QGTGAVIAAGFLNALKLS----------------GVP  294 (559)
T ss_pred             HhCCC-eEEehhhcCCccHHHHHHHhccCCCEecccc------hhHHHHHHHHHHHHHHHh----------------CCC
Confidence            34566 366655444433 343333445688888632      456778888889888742                567


Q ss_pred             cCCCeEEEEecCHHHHHHHHHHcc----CCC-------EEEEEcCCCccccccccccchhhhcccccccccccc--C---
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--G---  214 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~----~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---  214 (346)
                      |.+.++.|+|.|..|-.+|+.+..    .|.       +++.+|+..--..........+.      ..++...  .   
T Consensus       295 l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k------~~fa~~~~~~~~~  368 (559)
T PTZ00317        295 PEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHK------VPFARTDISAEDS  368 (559)
T ss_pred             hhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHH------HHHhccccccccc
Confidence            999999999999999999998863    577       78888875421100000000000      0111111  0   


Q ss_pred             CcCCHHHHhhcC--CEEEEeecCCccccCCCCHHHHccCCC---CcEEEEcCCCCCCCHHHHHHHHH--hCC-CeEEEEe
Q 019081          215 CHEDIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSLLVNIARGGLLDYEAIAHYLE--CGH-LGGLGID  286 (346)
Q Consensus       215 ~~~~l~ell~~a--DiV~~~lPlt~~T~~li~~~~l~~mk~---gailIN~sRg~~vd~~aL~~aL~--~g~-i~ga~lD  286 (346)
                      ...+|.|+++..  |+++-+-    ...|.|+++.++.|.+   ..++.=.|...--.|-.-.+|.+  +|+ |.+.|--
T Consensus       369 ~~~~L~e~v~~~KPtvLIG~S----~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGsp  444 (559)
T PTZ00317        369 SLKTLEDVVRFVKPTALLGLS----GVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSP  444 (559)
T ss_pred             cCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCC
Confidence            135899999998  9988642    2347999999999984   89999999887544433334444  454 4433321


Q ss_pred             cCCCCCCCCCCC---CCCCCceEEccCCCCC-----cHHHHHHHHHHHHHHHHHHH
Q 019081          287 VAWTEPFDPNDP---ILKFKNVLITPHVGGV-----TEHSYRSMAKVVGDVALQLH  334 (346)
Q Consensus       287 V~~~EPl~~~~p---L~~~~nviiTPH~a~~-----t~~~~~~~~~~~~~ni~~~~  334 (346)
                      .   +|..-+..   -=...|+++-|=++-.     .......|...+++.+-.+.
T Consensus       445 f---~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v  497 (559)
T PTZ00317        445 F---PPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLATLV  497 (559)
T ss_pred             C---CCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHHhhC
Confidence            1   11111111   1135788999976632     11222445555555555443

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.76  E-value=0.076  Score=47.56  Aligned_cols=44  Identities=30%  Similarity=0.456  Sum_probs=36.4

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW  186 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~  186 (346)
                      |+......|+.++|.|+|+|.+|..+++.|...|.. +..+|...
T Consensus         9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~   53 (198)
T cd01485           9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL   53 (198)
T ss_pred             cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            544334678999999999999999999999988985 88888653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.75  E-value=0.15  Score=51.74  Aligned_cols=39  Identities=21%  Similarity=0.308  Sum_probs=34.9

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +..+.++++.|+|.|.+|.++|+.|+..|++|.++|++.
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            345789999999999999999999999999999999654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=92.68  E-value=0.27  Score=45.20  Aligned_cols=93  Identities=23%  Similarity=0.282  Sum_probs=56.6

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh---cCC
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KAD  227 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aD  227 (346)
                      +.|++|.=||+|  |..+++-++..|++|++.|-+.+.-.....    ++..+     ...--....+.+++..   +.|
T Consensus        58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~----ha~e~-----gv~i~y~~~~~edl~~~~~~FD  126 (243)
T COG2227          58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKL----HALES-----GVNIDYRQATVEDLASAGGQFD  126 (243)
T ss_pred             CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHH----hhhhc-----cccccchhhhHHHHHhcCCCcc
Confidence            899999999999  458888888899999999987543211110    00000     0100012345667665   689


Q ss_pred             EEEE-----eecCCccccCCCCHHHHccCCCCcEEE
Q 019081          228 VVVC-----CLSLNKQTAGIVNKSFLSSMKKGSLLV  258 (346)
Q Consensus       228 iV~~-----~lPlt~~T~~li~~~~l~~mk~gailI  258 (346)
                      +|++     |+|. ++.   |=+...+.+|||.+++
T Consensus       127 vV~cmEVlEHv~d-p~~---~~~~c~~lvkP~G~lf  158 (243)
T COG2227         127 VVTCMEVLEHVPD-PES---FLRACAKLVKPGGILF  158 (243)
T ss_pred             EEEEhhHHHccCC-HHH---HHHHHHHHcCCCcEEE
Confidence            9977     5552 221   3334667789886654

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=92.66  E-value=0.14  Score=43.87  Aligned_cols=31  Identities=26%  Similarity=0.369  Sum_probs=26.3

Q ss_pred             eEEEEecCHHHHHHHHHHc-cCCCEEEEEcCC
Q 019081          155 TVFILGFGNIGVELAKRLR-PFGVKIIATKRS  185 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~  185 (346)
                      +|||-|||+|||.+++.+. .-.++|++++..
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~   33 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDP   33 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEES
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEecc
Confidence            7999999999999999887 567888887643

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK07877 hypothetical protein; Provisional

Probab=92.65  E-value=0.13  Score=54.91  Aligned_cols=101  Identities=15%  Similarity=0.158  Sum_probs=61.5

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccc---cchhhhc------------cccc-ccc
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQ---SSALAVK------------NGII-DDL  209 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~---~~~~~~~------------~~~~-~~~  209 (346)
                      ...|..++|+|+|+| +|..+|..|...|.  +++.+|...-....-.+.   ......+            +-.+ ...
T Consensus       102 Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~  180 (722)
T PRK07877        102 QERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV  180 (722)
T ss_pred             HHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence            357899999999999 99999999998784  788777533211000000   0000000            0000 000


Q ss_pred             ccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHcc
Q 019081          210 VDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS  250 (346)
Q Consensus       210 ~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~  250 (346)
                      ........++++++..+|+|+-|+- +-+++.++++...++
T Consensus       181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence            1111123578889999999999886 567888888776654

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.65  E-value=0.12  Score=49.34  Aligned_cols=37  Identities=27%  Similarity=0.480  Sum_probs=33.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      .|+|+.|+|+|.+|.++++-+++.|+ +++++|.+..+
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K  229 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK  229 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence            68999999999999999999999998 79999987654

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=92.63  E-value=0.6  Score=47.14  Aligned_cols=107  Identities=15%  Similarity=0.139  Sum_probs=70.3

Q ss_pred             cCCCeEEEEec----CHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081          151 LLGKTVFILGF----GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (346)
Q Consensus       151 l~g~tvgIiG~----G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (346)
                      ++-++|.|||.    |++|..+.+.++..|+  +|+.+++.....                  ...   ..+.+++++-.
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i------------------~G~---~~~~sl~~lp~   63 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI------------------LGV---KAYPSVLEIPD   63 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc------------------CCc---cccCCHHHCCC
Confidence            45679999999    8899999999998887  688888753220                  011   13567888877


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCC-cEEEEcCCCCCC-----CHHHHHHHHHhCCCe
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIARGGLL-----DYEAIAHYLECGHLG  281 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~g-ailIN~sRg~~v-----d~~aL~~aL~~g~i~  281 (346)
                      ..|++++++|. +.+..++.+  +....-. ++++.-+-++.-     .+++|.++.+++.+.
T Consensus        64 ~~Dlavi~vp~-~~~~~~l~e--~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir  123 (447)
T TIGR02717        64 PVDLAVIVVPA-KYVPQVVEE--CGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR  123 (447)
T ss_pred             CCCEEEEecCH-HHHHHHHHH--HHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence            88999999994 344444432  2223433 444443333322     357888888877654

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PLN02602 lactate dehydrogenase

Probab=92.57  E-value=0.29  Score=47.84  Aligned_cols=100  Identities=11%  Similarity=0.193  Sum_probs=57.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC-C-cCCHHHHhhcCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C-HEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~ell~~aDiV  229 (346)
                      ++|+|||.|.||..+|-.+...|.  ++..+|.+.......... ..+.      ..+..... . ..+.+ .+++||+|
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D-L~~~------~~~~~~~~i~~~~dy~-~~~daDiV  109 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD-LQHA------AAFLPRTKILASTDYA-VTAGSDLC  109 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH-HHhh------hhcCCCCEEEeCCCHH-HhCCCCEE
Confidence            699999999999999998875554  799999865432111100 0000      00000000 1 12444 48999999


Q ss_pred             EEeecCC--c-ccc-CCCC---------HHHHccCCCCcEEEEcC
Q 019081          230 VCCLSLN--K-QTA-GIVN---------KSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       230 ~~~lPlt--~-~T~-~li~---------~~~l~~mk~gailIN~s  261 (346)
                      +++.-..  + .|| .++.         .+.+....|.+++|+++
T Consensus       110 VitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        110 IVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9975421  1 122 1111         12344456889999997

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=92.55  E-value=0.32  Score=45.35  Aligned_cols=69  Identities=16%  Similarity=0.112  Sum_probs=45.7

Q ss_pred             eEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHh------hc-
Q 019081          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFA------SK-  225 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell------~~-  225 (346)
                      ++.|+|. |.||+.+++.|...|++|.+..|+..+.....             .+... ......++.+++      .. 
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~-------------~~~~~~d~~d~~~l~~a~~~~~~~~g~   67 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPN-------------EKHVKFDWLDEDTWDNPFSSDDGMEPE   67 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCC-------------CccccccCCCHHHHHHHHhcccCcCCc
Confidence            3678887 99999999999999999999998765321100             00000 011234566666      45 


Q ss_pred             CCEEEEeecCC
Q 019081          226 ADVVVCCLSLN  236 (346)
Q Consensus       226 aDiV~~~lPlt  236 (346)
                      +|.|+++.|..
T Consensus        68 ~d~v~~~~~~~   78 (285)
T TIGR03649        68 ISAVYLVAPPI   78 (285)
T ss_pred             eeEEEEeCCCC
Confidence            89999887754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=92.49  E-value=0.16  Score=42.54  Aligned_cols=32  Identities=34%  Similarity=0.517  Sum_probs=28.8

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      +|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 699998754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.42  E-value=0.19  Score=50.49  Aligned_cols=37  Identities=22%  Similarity=0.456  Sum_probs=33.7

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +.++++.|+|.|.+|.++|+.|+..|++|.++|....
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            5689999999999999999999999999999997543

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.42  E-value=0.19  Score=48.24  Aligned_cols=37  Identities=22%  Similarity=0.219  Sum_probs=32.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .|.+|.|.|.|.+|...++.++.+|++|++.+++..+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~  201 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAA  201 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHH
Confidence            4789999999999999999999999999998876543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=92.31  E-value=1.4  Score=44.57  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=36.3

Q ss_pred             CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ......|++|+|||.|.-|.+.|..|...|..|++|++...
T Consensus       117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~  157 (457)
T COG0493         117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL  157 (457)
T ss_pred             CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence            34467889999999999999999999999999999987643

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=92.24  E-value=0.42  Score=46.20  Aligned_cols=100  Identities=18%  Similarity=0.138  Sum_probs=59.3

Q ss_pred             eEEEEec-CHHHHHHHHHHccCC-------CEEEEEcCCCccccccccccchhhhcccccccccc-------ccCCcCCH
Q 019081          155 TVFILGF-GNIGVELAKRLRPFG-------VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-------EKGCHEDI  219 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G-------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l  219 (346)
                      +|+|+|. |.+|..++..|...|       .+|..+|++..........           .++.+       ......++
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~-----------~Dl~d~~~~~~~~~~~~~~~   72 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVV-----------MELQDCAFPLLKSVVATTDP   72 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccccee-----------eehhhccccccCCceecCCH
Confidence            7999999 999999999887633       4899999854321000000           01111       00013567


Q ss_pred             HHHhhcCCEEEEeecCCccccCC-----C--CH-------HHHccC-CCCcEEEEcCCCCCCCH
Q 019081          220 FEFASKADVVVCCLSLNKQTAGI-----V--NK-------SFLSSM-KKGSLLVNIARGGLLDY  268 (346)
Q Consensus       220 ~ell~~aDiV~~~lPlt~~T~~l-----i--~~-------~~l~~m-k~gailIN~sRg~~vd~  268 (346)
                      .+.++.||+|+.+.-.. ...+.     +  |.       ..+... ++++++|.++  ..+|.
T Consensus        73 ~~~l~~aDiVI~tAG~~-~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~  133 (325)
T cd01336          73 EEAFKDVDVAILVGAMP-RKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG--NPANT  133 (325)
T ss_pred             HHHhCCCCEEEEeCCcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec--CcHHH
Confidence            78899999998865432 21122     1  11       234444 5789999987  44543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=92.18  E-value=0.65  Score=45.15  Aligned_cols=71  Identities=15%  Similarity=0.163  Sum_probs=46.7

Q ss_pred             cccCCCeEEEEec---CHHHHHHHHHHc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHH
Q 019081          149 ETLLGKTVFILGF---GNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIF  220 (346)
Q Consensus       149 ~~l~g~tvgIiG~---G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~  220 (346)
                      ..+.|++|+++|=   +++..+.+..+. -+|++|....|..-..+..            .+ +.....+    ...+++
T Consensus       155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~------------~~-~~~~~~g~~~~~~~d~~  221 (338)
T PRK08192        155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDY------------VI-SDIENAGHKITITDQLE  221 (338)
T ss_pred             CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHH------------HH-HHHHHcCCeEEEEcCHH
Confidence            4588999999999   578888888765 4599998887643211100            00 0011111    236899


Q ss_pred             HHhhcCCEEEEe
Q 019081          221 EFASKADVVVCC  232 (346)
Q Consensus       221 ell~~aDiV~~~  232 (346)
                      +.+++||+|..-
T Consensus       222 ea~~~aDvvyt~  233 (338)
T PRK08192        222 GNLDKADILYLT  233 (338)
T ss_pred             HHHccCCEEEEc
Confidence            999999999883

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.13  E-value=0.21  Score=51.72  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      -.|+++.|.|. |.||+.+++.|...|++|++++|+..
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e  115 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ  115 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46789999996 99999999999999999999988654

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.12  E-value=0.18  Score=50.83  Aligned_cols=114  Identities=23%  Similarity=0.185  Sum_probs=66.4

Q ss_pred             cCCCeEEEEecCHHHHH-HHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          151 LLGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~-vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      ..++++.|+|+|..|.+ +|+.|+..|++|.++|.........      +  .    ....... . ..-.+.+..+|+|
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~------l--~----~~gi~~~-~-~~~~~~~~~~d~v   70 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQR------L--L----ELGAIIF-I-GHDAENIKDADVV   70 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHH------H--H----HCCCEEe-C-CCCHHHCCCCCEE
Confidence            46789999999999999 7999999999999999754321000      0  0    0000000 0 1123445678988


Q ss_pred             EEee--cCC-cc-------ccCCCCHHHH-cc-CCC-CcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          230 VCCL--SLN-KQ-------TAGIVNKSFL-SS-MKK-GSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       230 ~~~l--Plt-~~-------T~~li~~~~l-~~-mk~-gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +..-  |.+ +.       ...++++-.| .. +++ -.+-|-=+.|..-...=+.+.|+..
T Consensus        71 v~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~  132 (461)
T PRK00421         71 VYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA  132 (461)
T ss_pred             EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence            7643  322 11       1134554433 33 332 2444555678877777677777654

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=91.95  E-value=0.28  Score=44.98  Aligned_cols=39  Identities=31%  Similarity=0.430  Sum_probs=33.6

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ....++++.|+|. |.||+.+++.|...|++|+++.|+..
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~   52 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVD   52 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            4567899999995 99999999999989999998877643

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=91.93  E-value=0.13  Score=46.98  Aligned_cols=150  Identities=21%  Similarity=0.213  Sum_probs=85.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccc----ccchhhhcccccccc------ccc----cCCcC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC----QSSALAVKNGIIDDL------VDE----KGCHE  217 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~----~~~~~  217 (346)
                      .=+.|+|||.|.+|.-+|+.+..-|.+|..+|++.........    ....++.+.. .+..      ++.    .....
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~-~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKK-ADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcc-cCChhhHHHHHHHHHHHHHHcC
Confidence            3468999999999999999999999999999987643211100    0000111100 0000      000    01234


Q ss_pred             CHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCC
Q 019081          218 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPN  296 (346)
Q Consensus       218 ~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~  296 (346)
                      ++.++.+++|+|+=++--+-+.+.=+-++.=...|+.++|. |+|.   +...++..+++.... .+||-.|.+-|.   
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvPv---  161 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVPV---  161 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCchh---
Confidence            66677777887776554443332222333333467777764 5544   455677778776544 468888877664   


Q ss_pred             CCCCCCCceEEccCCC
Q 019081          297 DPILKFKNVLITPHVG  312 (346)
Q Consensus       297 ~pL~~~~nviiTPH~a  312 (346)
                         .++=-||=|+-.+
T Consensus       162 ---MKLvEVir~~~TS  174 (298)
T KOG2304|consen  162 ---MKLVEVIRTDDTS  174 (298)
T ss_pred             ---HHHhhhhcCCCCC
Confidence               2333355555444

>CHL00194 ycf39 Ycf39; Provisional

Probab=91.93  E-value=0.26  Score=46.93  Aligned_cols=70  Identities=13%  Similarity=0.198  Sum_probs=45.7

Q ss_pred             eEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc-cCCcCCHHHHhhcCCEEEEe
Q 019081          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       155 tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDiV~~~  232 (346)
                      +|.|.| .|.||+.+++.|...|++|.++.|+..+..... . .+        .+.+.. .....++.++++.+|+|+.+
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~-~-~~--------v~~v~~Dl~d~~~l~~al~g~d~Vi~~   71 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK-E-WG--------AELVYGDLSLPETLPPSFKGVTAIIDA   71 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh-h-cC--------CEEEECCCCCHHHHHHHHCCCCEEEEC
Confidence            788999 599999999999999999999988643210000 0 00        011100 01234677889999998876


Q ss_pred             ec
Q 019081          233 LS  234 (346)
Q Consensus       233 lP  234 (346)
                      .+
T Consensus        72 ~~   73 (317)
T CHL00194         72 ST   73 (317)
T ss_pred             CC
Confidence            54

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=91.93  E-value=0.39  Score=46.38  Aligned_cols=112  Identities=15%  Similarity=0.103  Sum_probs=61.4

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCC-------EEEEEcCCCcccc-ccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASHS-QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (346)
                      ++|+|||. |.||..+|..+...|.       ++..+|....... .....+.    .+... .......-..+..+.++
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl----~~~~~-~~~~~~~i~~~~~~~~~   77 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMEL----EDCAF-PLLAEIVITDDPNVAFK   77 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhh----hhccc-cccCceEEecCcHHHhC
Confidence            48999999 9999999998876555       7999998532210 0000000    00000 00000000134567889


Q ss_pred             cCCEEEEeecCCccccCCC-------CH-------HHHccCC-CCcEEEEcCCCCCCCHHHHHH
Q 019081          225 KADVVVCCLSLNKQTAGIV-------NK-------SFLSSMK-KGSLLVNIARGGLLDYEAIAH  273 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li-------~~-------~~l~~mk-~gailIN~sRg~~vd~~aL~~  273 (346)
                      +||+|+++.-. +...++-       |.       ..+.... |.+++|+++  ..+|.-.-+-
T Consensus        78 daDivvitaG~-~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~  138 (322)
T cd01338          78 DADWALLVGAK-PRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIA  138 (322)
T ss_pred             CCCEEEEeCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHH
Confidence            99999997643 2223321       11       1233334 589999996  5565544333

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=91.88  E-value=0.24  Score=38.86  Aligned_cols=66  Identities=15%  Similarity=0.124  Sum_probs=39.9

Q ss_pred             CCeEEEEecCHHHHHHHHHH-ccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc--CCE
Q 019081          153 GKTVFILGFGNIGVELAKRL-RPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l-~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  228 (346)
                      ..+++|+|+|+.|++++... ...|++ +.++|.++.......              ....   .+.+++++.+.  .|+
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i--------------~gip---V~~~~~~l~~~~~i~i   65 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI--------------GGIP---VYGSMDELEEFIEIDI   65 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE--------------TTEE---EESSHHHHHHHCTTSE
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE--------------CCEE---eeccHHHhhhhhCCCE
Confidence            34799999999999987544 345655 345665544311000              0000   12467777666  999


Q ss_pred             EEEeecC
Q 019081          229 VVCCLSL  235 (346)
Q Consensus       229 V~~~lPl  235 (346)
                      -++++|.
T Consensus        66 aii~VP~   72 (96)
T PF02629_consen   66 AIITVPA   72 (96)
T ss_dssp             EEEES-H
T ss_pred             EEEEcCH
Confidence            9999984

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=91.87  E-value=0.29  Score=47.69  Aligned_cols=107  Identities=11%  Similarity=0.092  Sum_probs=63.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccC--CCEEEE-EcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081          154 KTVFILGFGNIGVELAKRLRPF--GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~--G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  228 (346)
                      .+|||||+ .+|+..++.++..  ++++.+ +|++..+.                 ...+++++  .+.++++++++.|+
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA-----------------~~~A~~~gi~~y~~~eell~d~Di   65 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERS-----------------RALAHRLGVPLYCEVEELPDDIDI   65 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHH-----------------HHHHHHhCCCccCCHHHHhcCCCE
Confidence            58999999 6899998888764  578665 56654331                 11222222  35799999999999


Q ss_pred             EEEeecCC-ccccCCCCHHHHccCCCCc-EEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          229 VVCCLSLN-KQTAGIVNKSFLSSMKKGS-LLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       229 V~~~lPlt-~~T~~li~~~~l~~mk~ga-ilIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +++++|.+ +...|.  +-..+.|+.|- +|+--==. .-+.++|+++.++..+.
T Consensus        66 ~~V~ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~  117 (343)
T TIGR01761        66 ACVVVRSAIVGGQGS--ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRR  117 (343)
T ss_pred             EEEEeCCCCCCccHH--HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCE
Confidence            99999842 222221  22233345553 33322111 23455677776665554

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=91.85  E-value=0.18  Score=48.35  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=27.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC--CEEEEEcC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKR  184 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~  184 (346)
                      -+|||=|||+|||.+++.+...+  |+|++++.
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd   34 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND   34 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence            37999999999999999998764  99999876

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=91.77  E-value=0.33  Score=47.48  Aligned_cols=33  Identities=36%  Similarity=0.592  Sum_probs=30.5

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +|+|+|.|..|+.+++.++.+|++|+++|++..
T Consensus         1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~   33 (380)
T TIGR01142         1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYAN   33 (380)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            589999999999999999999999999998654

This enzyme is an alternative to PurN (TIGR00639)

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=91.76  E-value=0.49  Score=45.71  Aligned_cols=106  Identities=16%  Similarity=0.125  Sum_probs=59.1

Q ss_pred             eEEEEec-CHHHHHHHHHHccCCC-------EEEEEcCCCcc--ccccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081          155 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWAS--HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (346)
                      +|+|||. |.+|..+|..+...|.       ++..+|.....  ....... .    .+... .......-..+..+.++
T Consensus         5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-l----~~~~~-~~~~~~~i~~~~~~~~~   78 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAME-L----EDCAF-PLLAGVVATTDPEEAFK   78 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHH-H----hhccc-cccCCcEEecChHHHhC
Confidence            8999998 9999999998876664       79999985421  1110000 0    00000 00000001135567889


Q ss_pred             cCCEEEEeecCCccccCCC-------CH-------HHHccCCC-CcEEEEcCCCCCCCHH
Q 019081          225 KADVVVCCLSLNKQTAGIV-------NK-------SFLSSMKK-GSLLVNIARGGLLDYE  269 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li-------~~-------~~l~~mk~-gailIN~sRg~~vd~~  269 (346)
                      +||+|+++.-. +...++-       |.       ..+....| .+++|.++  ..+|.-
T Consensus        79 daDvVVitAG~-~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~  135 (323)
T TIGR01759        79 DVDAALLVGAF-PRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTN  135 (323)
T ss_pred             CCCEEEEeCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHH
Confidence            99999997643 2222221       11       12333444 89999996  555543

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=91.75  E-value=0.12  Score=45.77  Aligned_cols=67  Identities=22%  Similarity=0.292  Sum_probs=43.0

Q ss_pred             eEEEEecCHHHHHHHHH--HccCCCEE-EEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCEE
Q 019081          155 TVFILGFGNIGVELAKR--LRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV  229 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~--l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  229 (346)
                      ++.|||.|++|++++..  .+..||++ .+||..+..--...             .+ .. .....++++.++  +.|+.
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~-------------~~-v~-V~~~d~le~~v~~~dv~ia  150 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI-------------GD-VP-VYDLDDLEKFVKKNDVEIA  150 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCccc-------------CC-ee-eechHHHHHHHHhcCccEE
Confidence            68899999999999874  34678985 56776543210000             00 00 012356777787  67889


Q ss_pred             EEeecCC
Q 019081          230 VCCLSLN  236 (346)
Q Consensus       230 ~~~lPlt  236 (346)
                      ++++|..
T Consensus       151 iLtVPa~  157 (211)
T COG2344         151 ILTVPAE  157 (211)
T ss_pred             EEEccHH
Confidence            9999953

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.74  E-value=0.22  Score=50.02  Aligned_cols=35  Identities=14%  Similarity=0.282  Sum_probs=31.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ++-+++|+|+|.+|.++|+.|+..|++|.++|...
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            34589999999999999999999999999999754

>PRK07411 hypothetical protein; Validated

Probab=91.72  E-value=0.12  Score=51.23  Aligned_cols=44  Identities=23%  Similarity=0.343  Sum_probs=35.8

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      |+......|..++|+|||+|.+|..+|+.|...|. ++..+|...
T Consensus        28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            44333467999999999999999999999998888 588888643

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=91.64  E-value=0.46  Score=42.11  Aligned_cols=72  Identities=15%  Similarity=0.159  Sum_probs=49.4

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      ++++|||. |.+|+.+++.+..-|.+|+++-|+..+.....    +....++   +    ....+++.+.+..-|+|+..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~----~~~i~q~---D----ifd~~~~a~~l~g~DaVIsA   69 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ----GVTILQK---D----IFDLTSLASDLAGHDAVISA   69 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccc----cceeecc---c----ccChhhhHhhhcCCceEEEe
Confidence            47899995 99999999999999999999998876532210    0000000   1    11335566788899999987


Q ss_pred             ecCC
Q 019081          233 LSLN  236 (346)
Q Consensus       233 lPlt  236 (346)
                      .-..
T Consensus        70 ~~~~   73 (211)
T COG2910          70 FGAG   73 (211)
T ss_pred             ccCC
Confidence            7543

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=91.44  E-value=0.57  Score=44.27  Aligned_cols=35  Identities=37%  Similarity=0.317  Sum_probs=31.2

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .|+++.|.| .|-||+.+++.|...|++|++++++.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~   38 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP   38 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            368999999 69999999999999999999888754

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.43  E-value=0.28  Score=49.08  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ++.++++.|+|+|..|.+.++.|+..|.+|.++|...
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3568899999999999999999999999999999654

>PRK06197 short chain dehydrogenase; Provisional

Probab=91.39  E-value=0.22  Score=47.02  Aligned_cols=48  Identities=19%  Similarity=0.247  Sum_probs=39.1

Q ss_pred             hcccCCCCccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          140 QKKLGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       140 ~~~~~~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.|......++.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         3 ~~~~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~   51 (306)
T PRK06197          3 MTKWTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD   51 (306)
T ss_pred             CCCCCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3456544346789999999996 89999999999999999999888643

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=91.35  E-value=0.4  Score=49.75  Aligned_cols=44  Identities=25%  Similarity=0.334  Sum_probs=36.3

Q ss_pred             ccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       142 ~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      .|..+....-.|++|.|||.|.+|...|..|+..|++|+++|+.
T Consensus       126 ~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~  169 (564)
T PRK12771        126 GWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG  169 (564)
T ss_pred             CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            35433333457999999999999999999999999999999964

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=91.34  E-value=0.29  Score=44.68  Aligned_cols=38  Identities=32%  Similarity=0.455  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999996 99999999999999999999988643

>PLN02214 cinnamoyl-CoA reductase

Probab=91.13  E-value=0.62  Score=44.97  Aligned_cols=82  Identities=22%  Similarity=0.132  Sum_probs=49.8

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCC
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKAD  227 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aD  227 (346)
                      .+.++++.|.|. |.||+.+++.|...|++|.++.|+..........  .+.-....+ .... ......+++++++.+|
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~~d   83 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLR--ELEGGKERL-ILCKADLQDYEALKAAIDGCD   83 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHH--HhhCCCCcE-EEEecCcCChHHHHHHHhcCC
Confidence            357889999998 9999999999999999999998764321000000  000000000 0110 0012346778888999


Q ss_pred             EEEEeec
Q 019081          228 VVVCCLS  234 (346)
Q Consensus       228 iV~~~lP  234 (346)
                      +|+.+..
T Consensus        84 ~Vih~A~   90 (342)
T PLN02214         84 GVFHTAS   90 (342)
T ss_pred             EEEEecC
Confidence            8877664

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=91.10  E-value=0.49  Score=45.21  Aligned_cols=98  Identities=18%  Similarity=0.189  Sum_probs=57.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHc-cCCCEEEE-EcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh---
Q 019081          153 GKTVFILGFGNIGVELAKRLR-PFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS---  224 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~-~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~---  224 (346)
                      ..++||||.|+||+..+..+. .-++++.+ +|++..+...                ....+.+   ...+++++++   
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gl----------------a~A~~~Gi~~~~~~ie~LL~~~~   67 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGL----------------ARARRLGVATSAEGIDGLLAMPE   67 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHH----------------HHHHHcCCCcccCCHHHHHhCcC
Confidence            358999999999999666655 44677654 5554432100                0112222   2357888885   


Q ss_pred             --cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC---CCCC----CCHHHH
Q 019081          225 --KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA---RGGL----LDYEAI  271 (346)
Q Consensus       225 --~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s---Rg~~----vd~~aL  271 (346)
                        +.|+|+.+.|....   .  +-.....+.|..+|+-+   +|++    |+.+++
T Consensus        68 ~~dIDiVf~AT~a~~H---~--e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~  118 (302)
T PRK08300         68 FDDIDIVFDATSAGAH---V--RHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEH  118 (302)
T ss_pred             CCCCCEEEECCCHHHH---H--HHHHHHHHcCCeEEECCccccCCcccCcCCHHHH
Confidence              57889999874311   1  11222346677777765   5555    455554

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=91.08  E-value=0.99  Score=46.39  Aligned_cols=102  Identities=17%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHH
Q 019081          150 TLLGKTVFILGF---GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  221 (346)
Q Consensus       150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  221 (346)
                      .+.|++|+++|=   |++.++++..+..|| ++|....|..-..+..            .+ +.+.+.+    ...++++
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~------------~~-~~a~~~G~~v~i~~d~~e  237 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEH------------YV-EKMKKNGFEVRIFSSIEE  237 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHH------------HH-HHHHHcCCeEEEEcCHHH
Confidence            578999999998   689999999999998 9998877632211100            00 0011111    2468999


Q ss_pred             HhhcCCEE--EE-------eecCC-----cc--ccCCCCHHHHccCCCCcEEEEcC---CCC
Q 019081          222 FASKADVV--VC-------CLSLN-----KQ--TAGIVNKSFLSSMKKGSLLVNIA---RGG  264 (346)
Q Consensus       222 ll~~aDiV--~~-------~lPlt-----~~--T~~li~~~~l~~mk~gailIN~s---Rg~  264 (346)
                      .+++||+.  ..       ..+..     ..  -...++++.++.+|++++|.-+.   ||.
T Consensus       238 av~~AD~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcLPa~Rg~  299 (525)
T PRK13376        238 YLSQKDVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPLPRHKVY  299 (525)
T ss_pred             HhccCCccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCCCCCCCC
Confidence            99999952  22       11110     00  23567899999999999998874   663

>PRK12828 short chain dehydrogenase; Provisional

Probab=91.02  E-value=0.31  Score=43.57  Aligned_cols=38  Identities=34%  Similarity=0.401  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.||++.|.|. |.||+.+++.+...|++|++++|+..
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~   42 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA   42 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence            477999999986 99999999999988999999998654

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=91.01  E-value=0.91  Score=50.18  Aligned_cols=89  Identities=24%  Similarity=0.254  Sum_probs=59.4

Q ss_pred             cCCC-CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccc-------------c
Q 019081          143 LGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID-------------D  208 (346)
Q Consensus       143 ~~~~-~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------------~  208 (346)
                      |-.+ +...-.|++|+|||-|..|.+.|..|...|..|++|.|+....--     .-|.+|+-.++             +
T Consensus      1774 wm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-----l~ygipnmkldk~vv~rrv~ll~~e 1848 (2142)
T KOG0399|consen 1774 WMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-----LMYGIPNMKLDKFVVQRRVDLLEQE 1848 (2142)
T ss_pred             CCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce-----eeecCCccchhHHHHHHHHHHHHhh
Confidence            5443 334568999999999999999999999999999999986532100     00111110000             0


Q ss_pred             cc-----cccCCcCCHHHHhhcCCEEEEeecCC
Q 019081          209 LV-----DEKGCHEDIFEFASKADVVVCCLSLN  236 (346)
Q Consensus       209 ~~-----~~~~~~~~l~ell~~aDiV~~~lPlt  236 (346)
                      ..     .+.+...++++|.++-|.|+++.-.|
T Consensus      1849 gi~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1849 GIRFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             CceEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence            11     11223478999999999999988655

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.00  E-value=0.33  Score=43.85  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++.|+++.|+|. |.||+.+++.+...|++|++.+++..
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~   40 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE   40 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            367999999998 99999999999999999999998653

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=90.99  E-value=0.92  Score=38.10  Aligned_cols=99  Identities=16%  Similarity=0.215  Sum_probs=63.0

Q ss_pred             HHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-C-cCCHHHHhhcCCEEEEeecCCccccCCCC
Q 019081          167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C-HEDIFEFASKADVVVCCLSLNKQTAGIVN  244 (346)
Q Consensus       167 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~ell~~aDiV~~~lPlt~~T~~li~  244 (346)
                      ..+++|...|++|++=.-.....        +|.      ++.....| . ..+-++++++||+|+-.=|.+        
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a--------~fs------D~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------   75 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGA--------GFS------DEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------   75 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGG--------TB-------HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------
T ss_pred             HHHHHHHhCCCEEEEECCCCCcC--------ccc------HHHHhhCCcEEecCchhhcccCCEEEEECCCC--------
Confidence            45677887899998732111110        010      11122222 2 235568999999998876653        


Q ss_pred             HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081          245 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  289 (346)
Q Consensus       245 ~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  289 (346)
                      .+.++.|++|.++|-.....  ....+++.|.+.++...++|...
T Consensus        76 ~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ip  118 (136)
T PF05222_consen   76 EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIP  118 (136)
T ss_dssp             GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSB
T ss_pred             HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCc
Confidence            56788899999999886655  58999999999999888887653

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=90.96  E-value=0.47  Score=46.52  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=31.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .|++|.|.|.|.+|...++.++.+|++|++.+++.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~  212 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS  212 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence            58899999999999999999999999999887653

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=90.92  E-value=1.8  Score=42.80  Aligned_cols=94  Identities=16%  Similarity=0.255  Sum_probs=66.2

Q ss_pred             CccccCCCeEEEEec---CHH-------HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCc
Q 019081          147 TGETLLGKTVFILGF---GNI-------GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH  216 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~---G~I-------G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (346)
                      .++.++|.+|.++|+   |++       ...+.+.+...|.+|.+||+.....+  .+              ......+.
T Consensus       316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~--~~--------------~~~~~~~~  379 (436)
T COG0677         316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELP--TR--------------EDGEGVTL  379 (436)
T ss_pred             cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcch--hh--------------hhccccch
Confidence            367899999999998   333       46788889999999999999765421  00              00000124


Q ss_pred             CCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          217 EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       217 ~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      ..+++.++.+|+|++.+-  .+...-++.+.+.++  ..++|++
T Consensus       380 ~~~e~al~~~D~vVi~tD--H~~fk~id~~~i~~~--~~vivDt  419 (436)
T COG0677         380 AILEEALKDADAVVIATD--HSEFKEIDYEAIGKE--AKVIVDT  419 (436)
T ss_pred             hhHHHHhccCCEEEEEec--cHHhhcCCHHHhccC--CcEEEEC
Confidence            688999999999999862  233335788888665  6677776

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=90.91  E-value=0.44  Score=46.43  Aligned_cols=37  Identities=19%  Similarity=0.374  Sum_probs=32.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      .|++|.|.|.|.||...++.++..|+ +|++.+++..+
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r  228 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDK  228 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence            47899999999999999999999999 69988876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=90.89  E-value=0.56  Score=44.49  Aligned_cols=66  Identities=26%  Similarity=0.292  Sum_probs=41.3

Q ss_pred             eEEEEecCHHHHHHHHHHc-cCCCEEEE-EcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--cCC
Q 019081          155 TVFILGFGNIGVELAKRLR-PFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KAD  227 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~-~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~aD  227 (346)
                      ++||||.|.||+..+..+. .-++++.+ +|+++.+...                ....+.+   ...+.+++++  +.|
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~l----------------a~A~~~Gi~~~~~~~e~ll~~~dID   66 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGL----------------ARARELGVKTSAEGVDGLLANPDID   66 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHH----------------HHHHHCCCCEEECCHHHHhcCCCCC
Confidence            7999999999998866555 44677664 5655432110                0111222   2346788875  578


Q ss_pred             EEEEeecCC
Q 019081          228 VVVCCLSLN  236 (346)
Q Consensus       228 iV~~~lPlt  236 (346)
                      +|+++.|..
T Consensus        67 aV~iaTp~~   75 (285)
T TIGR03215        67 IVFDATSAK   75 (285)
T ss_pred             EEEECCCcH
Confidence            899998743

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=90.82  E-value=0.16  Score=50.30  Aligned_cols=44  Identities=23%  Similarity=0.310  Sum_probs=35.6

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      |+......|..++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus        32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            44333457899999999999999999999998887 688888643

>PRK06153 hypothetical protein; Provisional

Probab=90.79  E-value=0.22  Score=49.03  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=33.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~  185 (346)
                      ..|++++|+|||+|.+|..++..|...|. +++.+|..
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            36899999999999999999999999888 68888864

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=90.75  E-value=0.54  Score=45.99  Aligned_cols=35  Identities=31%  Similarity=0.345  Sum_probs=31.7

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .+++|.|.|. |.||+.+++.|...|++|++++|..
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            5689999997 9999999999999999999999753

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=90.75  E-value=1.7  Score=41.47  Aligned_cols=69  Identities=20%  Similarity=0.282  Sum_probs=48.0

Q ss_pred             cCCCeEEEEe---cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc--cCC-cCCHHHHhh
Q 019081          151 LLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGC-HEDIFEFAS  224 (346)
Q Consensus       151 l~g~tvgIiG---~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~ell~  224 (346)
                      +.|++|+|+|   +|++.++.++.|+.||.+|..+.|..-..++            .++.++...  ... ....+|.++
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~------------~i~~~l~~~~~~~~~~~~~e~~i~  223 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPE------------YILEELEEKGGVVVEHDSDEEVIE  223 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCch------------hHHHHHhhcCceEEEecchhhhhc
Confidence            8999999999   8999999999999999999998764332211            111112111  112 244556999


Q ss_pred             cCCEEEE
Q 019081          225 KADVVVC  231 (346)
Q Consensus       225 ~aDiV~~  231 (346)
                      ++|++.+
T Consensus       224 ~~DVl~~  230 (316)
T COG0540         224 EADVLYM  230 (316)
T ss_pred             cCCEEEe
Confidence            9999955

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=90.74  E-value=0.31  Score=46.74  Aligned_cols=33  Identities=15%  Similarity=0.382  Sum_probs=27.4

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCc
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWA  187 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~  187 (346)
                      +|+|||.|.||..+|..+...|.  ++..+|.+..
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   35 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG   35 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            58999999999999998765554  7999998654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=90.65  E-value=0.83  Score=46.92  Aligned_cols=136  Identities=21%  Similarity=0.302  Sum_probs=94.2

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +..+.|+...++|-..| |..++..|+.....|+..-..                              ..++.|.+.++
T Consensus       157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK------------------------------T~~lae~v~~A  206 (935)
T KOG4230|consen  157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK------------------------------TRNLAEKVSRA  206 (935)
T ss_pred             CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC------------------------------CccHHHHhccC
Confidence            46789999999999876 999999999988888875321                              24788889999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCCce
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNV  305 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nv  305 (346)
                      |+|++++--.    +++-.+.   +|||+++|+++--.+-|..-     ++| ++   .=||-..+--    .    --=
T Consensus       207 DIvIvAiG~P----efVKgdW---iKpGavVIDvGINyvpD~~K-----ksg~kl---vGDVdfe~Ak----e----vas  263 (935)
T KOG4230|consen  207 DIVIVAIGQP----EFVKGDW---IKPGAVVIDVGINYVPDPSK-----KSGFKL---VGDVDFESAK----E----VAS  263 (935)
T ss_pred             CEEEEEcCCc----ceeeccc---ccCCcEEEEccccccCCCCC-----cccceE---eeecchHhhh----h----hhh
Confidence            9999998532    3555554   69999999998666544321     223 23   3366433311    0    112


Q ss_pred             EEccCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 019081          306 LITPHVGGVTEHSYRSMAKVVGDVALQLHAG  336 (346)
Q Consensus       306 iiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g  336 (346)
                      .+||-=||.-+.+..-+.+...+...|+..+
T Consensus       264 ~ITPVPGGVGPMTVAMLmqNtveaAKR~r~e  294 (935)
T KOG4230|consen  264 FITPVPGGVGPMTVAMLMQNTVEAAKRQREE  294 (935)
T ss_pred             ccccCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            5799888888877766667777776666543

>PRK06349 homoserine dehydrogenase; Provisional

Probab=90.65  E-value=0.59  Score=46.86  Aligned_cols=106  Identities=19%  Similarity=0.204  Sum_probs=58.1

Q ss_pred             CeEEEEecCHHHHHHHHHHcc----------CCCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081          154 KTVFILGFGNIGVELAKRLRP----------FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~----------~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (346)
                      -+|||+|+|.||+.+++.+..          .+++|. ++|++..+... .              .. .......+++++
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~-~--------------~~-~~~~~~~d~~~l   67 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRG-V--------------DL-PGILLTTDPEEL   67 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccC-C--------------CC-cccceeCCHHHH
Confidence            379999999999999887743          245654 45665432100 0              00 000123578899


Q ss_pred             hh--cCCEEEEeecCCccccCCCCHHH-HccCCCCcEEEEcCCCCCC-CHHHHHHHHHhCCC
Q 019081          223 AS--KADVVVCCLSLNKQTAGIVNKSF-LSSMKKGSLLVNIARGGLL-DYEAIAHYLECGHL  280 (346)
Q Consensus       223 l~--~aDiV~~~lPlt~~T~~li~~~~-l~~mk~gailIN~sRg~~v-d~~aL~~aL~~g~i  280 (346)
                      +.  +.|+|+.+++..+..     .+. .+.|+.|--+|...-+... .-++|.++.++...
T Consensus        68 l~d~~iDvVve~tg~~~~~-----~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv  124 (426)
T PRK06349         68 VNDPDIDIVVELMGGIEPA-----RELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV  124 (426)
T ss_pred             hhCCCCCEEEECCCCchHH-----HHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence            85  469999988643211     222 2445555444433222222 23667776666544

>PRK07856 short chain dehydrogenase; Provisional

Probab=90.55  E-value=0.42  Score=43.53  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ++.||++.|.|. |.||+++|+.|...|++|+..+|+.
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~   40 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA   40 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            478999999996 6899999999999999999998865

>PRK10537 voltage-gated potassium channel; Provisional

Probab=90.54  E-value=1.2  Score=44.28  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=29.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      ...+-|+|+|.+|+.+++.|+..|.+|++.|+.
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d  272 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL  272 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence            457999999999999999999999999888864

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=90.52  E-value=0.51  Score=45.07  Aligned_cols=36  Identities=25%  Similarity=0.378  Sum_probs=32.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~  187 (346)
                      .|.+|.|+|.|.+|...++.++.+|++ |++.+++..
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~  199 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPE  199 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            488999999999999999999999999 999887543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=90.42  E-value=0.75  Score=43.09  Aligned_cols=70  Identities=20%  Similarity=0.268  Sum_probs=42.0

Q ss_pred             eEEEEe-cCHHHHHHHHHHcc-CCCEEEE-EcCCCcccc-ccccccchhhhccccccccccc-cCCcCCHHHHhhcCCEE
Q 019081          155 TVFILG-FGNIGVELAKRLRP-FGVKIIA-TKRSWASHS-QVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVV  229 (346)
Q Consensus       155 tvgIiG-~G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDiV  229 (346)
                      +|+|+| +|+||+.+++.+.. -++++.+ +|+...... .....          +...... .....+++++...+|+|
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~----------~~~~~~~gv~~~~d~~~l~~~~DvV   72 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGE----------LAGIGKVGVPVTDDLEAVETDPDVL   72 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHH----------hcCcCcCCceeeCCHHHhcCCCCEE
Confidence            799999 69999999998874 5888665 664322110 00000          0000000 01236788876678999


Q ss_pred             EEeec
Q 019081          230 VCCLS  234 (346)
Q Consensus       230 ~~~lP  234 (346)
                      +.+.|
T Consensus        73 IdfT~   77 (266)
T TIGR00036        73 IDFTT   77 (266)
T ss_pred             EECCC
Confidence            99875

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=90.33  E-value=1.2  Score=44.14  Aligned_cols=74  Identities=16%  Similarity=0.141  Sum_probs=47.7

Q ss_pred             ccCCCeEEEEec-----C---HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcC
Q 019081          150 TLLGKTVFILGF-----G---NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE  217 (346)
Q Consensus       150 ~l~g~tvgIiG~-----G---~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  217 (346)
                      .+.|++|+|+|-     |   ++.++++..+..+|++|.+..|..-......   ...+      .+.....+    ...
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i---~~~a------~~~~~~~G~~i~~~~  254 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEV---VEVA------KKNAKASGGSFRQVN  254 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHH---HHHH------HHHHHHcCCeEEEEc
Confidence            478999999985     5   5678999999999999999876421110000   0000      00011111    247


Q ss_pred             CHHHHhhcCCEEEEe
Q 019081          218 DIFEFASKADVVVCC  232 (346)
Q Consensus       218 ~l~ell~~aDiV~~~  232 (346)
                      ++++.+++||+|..-
T Consensus       255 d~~eav~~aDvVYtd  269 (395)
T PRK07200        255 SMEEAFKDADIVYPK  269 (395)
T ss_pred             CHHHHhCCCCEEEEc
Confidence            899999999999775

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.28  E-value=0.41  Score=43.26  Aligned_cols=38  Identities=29%  Similarity=0.502  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++.++++.|+|. |.||+.+++.|...|++|++++|+..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999996 89999999999999999999998754

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=90.27  E-value=0.71  Score=44.62  Aligned_cols=102  Identities=18%  Similarity=0.141  Sum_probs=59.2

Q ss_pred             eEEEEec-CHHHHHHHHHHccCCC-------EEEEEcCCCccccccccccchhhhcccccccccccc------C-CcCCH
Q 019081          155 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK------G-CHEDI  219 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~l  219 (346)
                      +|+|+|. |.||..+|..+...|.       ++..+|+...........           .++.+..      . ...+.
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~-----------~Dl~d~~~~~~~~~~~~~~~   69 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVV-----------MELMDCAFPLLDGVVPTHDP   69 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeE-----------eehhcccchhcCceeccCCh
Confidence            5899999 9999999998876444       588999854321000000           0111110      0 11255


Q ss_pred             HHHhhcCCEEEEeecCCccccCC-----C--C-------HHHHccC-CCCcEEEEcCCCCCCCHHH
Q 019081          220 FEFASKADVVVCCLSLNKQTAGI-----V--N-------KSFLSSM-KKGSLLVNIARGGLLDYEA  270 (346)
Q Consensus       220 ~ell~~aDiV~~~lPlt~~T~~l-----i--~-------~~~l~~m-k~gailIN~sRg~~vd~~a  270 (346)
                      .+.+++||+|++..-. +...+.     +  |       ...+... +|++++|.++  ..+|.-.
T Consensus        70 ~~~~~~aDiVVitAG~-~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        70 AVAFTDVDVAILVGAF-PRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             HHHhCCCCEEEEcCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            6889999999986543 222222     1  1       1234445 5889999987  5555443

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=90.26  E-value=0.41  Score=44.12  Aligned_cols=93  Identities=19%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh--hcCCE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA--SKADV  228 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--~~aDi  228 (346)
                      .|.++.|.|.|.+|..+++.++.+|.+ |++.+++..+.....        +.+    ..+...  ...+...  ...|+
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~--------~~g----~~~~~~--~~~~~~~~~~~~d~  162 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE--------ALG----PADPVA--ADTADEIGGRGADV  162 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH--------HcC----CCcccc--ccchhhhcCCCCCE
Confidence            578999999999999999999999999 988876543211000        000    000000  0000111  24788


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      ++.++....     .-...++.|+++..+++++-.
T Consensus       163 vl~~~~~~~-----~~~~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         163 VIEASGSPS-----ALETALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             EEEccCChH-----HHHHHHHHhcCCcEEEEEecc
Confidence            877654221     124567788999999988644

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=90.19  E-value=0.22  Score=46.75  Aligned_cols=43  Identities=19%  Similarity=0.307  Sum_probs=35.8

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~  185 (346)
                      |+......|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus        20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            54433467899999999999999999999998885 78888854

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=90.19  E-value=0.75  Score=44.21  Aligned_cols=76  Identities=20%  Similarity=0.372  Sum_probs=49.0

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .+|+|+| .|.+|+++.+.|.... +++.....+...                   ..       .+.++.++++|+|++
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~~-------~~~~~~~~~~DvvFl   56 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------DA-------AARRELLNAADVAIL   56 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------cc-------cCchhhhcCCCEEEE
Confidence            4799999 7999999999998654 355544322111                   00       123456678999999


Q ss_pred             eecCCccccCCCCHHHHccC-CCCcEEEEcC
Q 019081          232 CLSLNKQTAGIVNKSFLSSM-KKGSLLVNIA  261 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~m-k~gailIN~s  261 (346)
                      ++|...      ..+....+ +.|..+|+.|
T Consensus        57 alp~~~------s~~~~~~~~~~g~~VIDlS   81 (313)
T PRK11863         57 CLPDDA------AREAVALIDNPATRVIDAS   81 (313)
T ss_pred             CCCHHH------HHHHHHHHHhCCCEEEECC
Confidence            998542      22222222 5688888887

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=90.18  E-value=0.6  Score=44.86  Aligned_cols=99  Identities=18%  Similarity=0.180  Sum_probs=58.7

Q ss_pred             eEEEEec-CHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhcccccccccc--ccCC---cCCHHHHhhcC
Q 019081          155 TVFILGF-GNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGC---HEDIFEFASKA  226 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~l~ell~~a  226 (346)
                      +|+|||. |.||..+|-.+...|  -++..+|.+... ....+.           .+...  ....   ..++.+.+++|
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~-g~a~DL-----------~~~~~~~~i~~~~~~~~~~~~~~da   68 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA-GVAADL-----------SHIPTAASVKGFSGEEGLENALKGA   68 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc-EEEchh-----------hcCCcCceEEEecCCCchHHHcCCC
Confidence            6899999 999999999886545  479999986521 111100           00000  0000   12356789999


Q ss_pred             CEEEEeecCCccccCC-----C--CH-------HHHccCCCCcEEEEcCCCCCCCH
Q 019081          227 DVVVCCLSLNKQTAGI-----V--NK-------SFLSSMKKGSLLVNIARGGLLDY  268 (346)
Q Consensus       227 DiV~~~lPlt~~T~~l-----i--~~-------~~l~~mk~gailIN~sRg~~vd~  268 (346)
                      |+|+++.-.. ...++     +  |.       +.+..-.|++++|+++  ..+|.
T Consensus        69 DivvitaG~~-~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs--NPvDv  121 (312)
T TIGR01772        69 DVVVIPAGVP-RKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT--NPVNS  121 (312)
T ss_pred             CEEEEeCCCC-CCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec--Cchhh
Confidence            9999876532 21221     1  11       2344446899999995  44553

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=90.14  E-value=0.43  Score=43.18  Aligned_cols=37  Identities=30%  Similarity=0.426  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .+.||++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            378999999997 7999999999999999999998754

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=90.12  E-value=0.62  Score=43.91  Aligned_cols=71  Identities=11%  Similarity=0.159  Sum_probs=45.6

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~  231 (346)
                      +++.|.|. |.||+.+++.|...|.+|++++|+..........  .        ..... ......++.++++.+|+|+.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~--~--------~~~~~~D~~~~~~l~~~~~~~d~vi~   70 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGL--D--------VEIVEGDLRDPASLRKAVAGCRALFH   70 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccC--C--------ceEEEeeCCCHHHHHHHHhCCCEEEE
Confidence            36889985 9999999999999999999999865431100000  0        00000 00122456778888999887


Q ss_pred             eec
Q 019081          232 CLS  234 (346)
Q Consensus       232 ~lP  234 (346)
                      +.+
T Consensus        71 ~a~   73 (328)
T TIGR03466        71 VAA   73 (328)
T ss_pred             ece
Confidence            664

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK06057 short chain dehydrogenase; Provisional

Probab=90.09  E-value=0.44  Score=43.51  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.|+++.|+|. |.||+.+++.+...|++|++++++..
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~   42 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE   42 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999999 99999999999999999999988643

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=90.01  E-value=0.38  Score=44.21  Aligned_cols=38  Identities=29%  Similarity=0.365  Sum_probs=33.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      ..|.+++|.|+|+|.+|..+++.|...|. +++.+|...
T Consensus         7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755           7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            45889999999999999999999998888 788888643

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=89.91  E-value=0.64  Score=45.96  Aligned_cols=40  Identities=25%  Similarity=0.357  Sum_probs=34.9

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +..-.++++.|+|. |.||+.+++.|...|++|++++|+..
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~   95 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS   95 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence            45667889999996 99999999999999999999998653

>PLN02427 UDP-apiose/xylose synthase

Probab=89.91  E-value=0.74  Score=45.06  Aligned_cols=40  Identities=25%  Similarity=0.329  Sum_probs=34.5

Q ss_pred             CccccCCCeEEEEec-CHHHHHHHHHHccC-CCEEEEEcCCC
Q 019081          147 TGETLLGKTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSW  186 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~-G~~V~~~d~~~  186 (346)
                      .|..+..++|.|.|. |-||+.+++.|... |.+|+++|++.
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~   49 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN   49 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence            467788889999995 99999999999877 69999999754

>PRK06841 short chain dehydrogenase; Provisional

Probab=89.86  E-value=0.47  Score=43.17  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++.|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~   50 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED   50 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578999999995 99999999999999999999988643

>PRK06523 short chain dehydrogenase; Provisional

Probab=89.83  E-value=0.48  Score=43.30  Aligned_cols=39  Identities=31%  Similarity=0.435  Sum_probs=34.7

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .++.||++.|.|. |.||+.+|+.+...|++|++.+|+..
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~   44 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP   44 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence            4688999999996 89999999999999999999988643

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=89.82  E-value=0.7  Score=44.72  Aligned_cols=36  Identities=25%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~  187 (346)
                      .|++|.|+|.|.+|...++.++.+|++ |++.+++..
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~  212 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR  212 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH
Confidence            478999999999999999999999995 888887643

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=89.81  E-value=0.63  Score=44.46  Aligned_cols=35  Identities=31%  Similarity=0.429  Sum_probs=31.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .|.++.|.|.|.+|+.+++.++.+|++|++++++.
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~  203 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSP  203 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCH
Confidence            46799999999999999999999999999988754

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=89.80  E-value=0.74  Score=44.63  Aligned_cols=98  Identities=19%  Similarity=0.203  Sum_probs=57.6

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      ..|.+|.|.|.|.+|..+++.++..|.+|++.+++..+.......   +.     .+..... .....+.++....|+++
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~G-----a~~~i~~-~~~~~~~~~~~~~D~vi  249 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LG-----ADDYLVS-SDAAEMQEAADSLDYII  249 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cC-----CcEEecC-CChHHHHHhcCCCcEEE
Confidence            357899999999999999999999999988887643221000000   00     0000000 00011233333568888


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      -+++...     .-...++.++++..++.++.
T Consensus       250 d~~g~~~-----~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        250 DTVPVFH-----PLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ECCCchH-----HHHHHHHHhccCCEEEEECC
Confidence            7765321     12345677888888888864

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=89.76  E-value=0.39  Score=47.93  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee-
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL-  233 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l-  233 (346)
                      ++.|||+|.+|.++|+.|+..|++|.++|.............  ....     ....-... .+ .+.+.++|+|+..- 
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~--~~~~-----~gi~~~~g-~~-~~~~~~~d~vv~sp~   71 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQ--LRLN-----EGSVLHTG-LH-LEDLNNADLVVKSPG   71 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHH--Hhhc-----cCcEEEec-Cc-hHHhccCCEEEECCC
Confidence            478999999999999999999999999997543211100000  0000     00000001 23 34567899886643 


Q ss_pred             -cCC-cc-----cc--CCCCHH-HH-ccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          234 -SLN-KQ-----TA--GIVNKS-FL-SSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       234 -Plt-~~-----T~--~li~~~-~l-~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                       |.+ |+     -.  .++.+- .+ ..++.-.+-|-=+.|..-...=+...|+..
T Consensus        72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~  127 (433)
T TIGR01087        72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAA  127 (433)
T ss_pred             CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence             322 11     11  233333 22 223333455555788887777777777753

>PRK08703 short chain dehydrogenase; Provisional

Probab=89.73  E-value=0.48  Score=42.72  Aligned_cols=39  Identities=28%  Similarity=0.411  Sum_probs=34.6

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..+.|+++.|.|. |.||+.+|+.+...|++|++++|+..
T Consensus         2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~   41 (239)
T PRK08703          2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQK   41 (239)
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChH
Confidence            3578899999996 89999999999999999999998764

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=89.66  E-value=0.18  Score=40.85  Aligned_cols=88  Identities=25%  Similarity=0.426  Sum_probs=50.6

Q ss_pred             ecCHHHHHHHHHHccC----CCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCEEEEe
Q 019081          160 GFGNIGVELAKRLRPF----GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVVVCC  232 (346)
Q Consensus       160 G~G~IG~~vA~~l~~~----G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~~~  232 (346)
                      |+|.||+.+++.+...    +++|.+ ++++ .......             ...........++++++.  ..|+|+=+
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~dvvVE~   66 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDW-------------AASFPDEAFTTDLEELIDDPDIDVVVEC   66 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTH-------------HHHHTHSCEESSHHHHHTHTT-SEEEE-
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhh-------------hhhcccccccCCHHHHhcCcCCCEEEEC
Confidence            8999999999999764    677655 4554 1100000             000111112468899988  89999998


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCC
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL  266 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~v  266 (346)
                      .+..+-+     .-..+.++.|.-+|-.+-|.+.
T Consensus        67 t~~~~~~-----~~~~~~L~~G~~VVt~nk~ala   95 (117)
T PF03447_consen   67 TSSEAVA-----EYYEKALERGKHVVTANKGALA   95 (117)
T ss_dssp             SSCHHHH-----HHHHHHHHTTCEEEES-HHHHH
T ss_pred             CCchHHH-----HHHHHHHHCCCeEEEECHHHhh
Confidence            5432221     2234446788888888888877

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.64  E-value=0.5  Score=42.44  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++.|+++.|.|. |.||+.+++.+...|++|++++|+..
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999997 77999999999999999999998654

>cd08293 PTGR2 Prostaglandin reductase

Probab=89.64  E-value=0.72  Score=44.01  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=30.4

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      |++|.|.|. |.+|...++.++.+|+ +|++.+++.
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~  190 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSD  190 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence            489999998 9999999999999999 799987654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK05442 malate dehydrogenase; Provisional

Probab=89.62  E-value=0.84  Score=44.15  Aligned_cols=111  Identities=16%  Similarity=0.098  Sum_probs=60.2

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCC-------EEEEEcCCCcc--ccccccccchhhhccccccccccccCCcCCHHHHh
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWAS--HSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA  223 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  223 (346)
                      .+|+|||. |.||..+|..+...|.       ++..+|.+...  ....... ..    +... .......-..+..+.+
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~D-l~----~~~~-~~~~~~~i~~~~y~~~   78 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVME-LD----DCAF-PLLAGVVITDDPNVAF   78 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehh-hh----hhhh-hhcCCcEEecChHHHh
Confidence            48999998 9999999988764333       79999985422  1110000 00    0000 0000000113556788


Q ss_pred             hcCCEEEEeecCCccccCCC-------CH-------HHHcc-CCCCcEEEEcCCCCCCCHHHHHH
Q 019081          224 SKADVVVCCLSLNKQTAGIV-------NK-------SFLSS-MKKGSLLVNIARGGLLDYEAIAH  273 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~T~~li-------~~-------~~l~~-mk~gailIN~sRg~~vd~~aL~~  273 (346)
                      ++||+|+++.-. +...++-       |.       +.+.. -++.+++|.++  ..+|.-.-+-
T Consensus        79 ~daDiVVitaG~-~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~  140 (326)
T PRK05442         79 KDADVALLVGAR-PRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNALIA  140 (326)
T ss_pred             CCCCEEEEeCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHHHHH
Confidence            999999986642 2222321       11       12333 33789999997  5565544333

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=89.60  E-value=0.39  Score=44.76  Aligned_cols=44  Identities=25%  Similarity=0.328  Sum_probs=37.0

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      |+......|...+|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus        16 wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~   60 (287)
T PTZ00245         16 WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL   60 (287)
T ss_pred             hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCc
Confidence            76555577999999999999999999999998888 577877643

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=89.46  E-value=0.8  Score=42.45  Aligned_cols=57  Identities=28%  Similarity=0.379  Sum_probs=41.6

Q ss_pred             eEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC--CEEEE
Q 019081          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA--DVVVC  231 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~~  231 (346)
                      ++.|+|. |.||+.+++.|...|.+|++++|+...                    ..    ...++.+++..+  |+|+.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d--------------------~~----~~~~~~~~~~~~~~d~vi~   56 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLD--------------------LT----DPEALERLLRAIRPDAVVN   56 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccC--------------------CC----CHHHHHHHHHhCCCCEEEE
Confidence            4678895 999999999999999999999875211                    10    123566677665  99987


Q ss_pred             eecC
Q 019081          232 CLSL  235 (346)
Q Consensus       232 ~lPl  235 (346)
                      +...
T Consensus        57 ~a~~   60 (287)
T TIGR01214        57 TAAY   60 (287)
T ss_pred             CCcc
Confidence            6653

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK08265 short chain dehydrogenase; Provisional

Probab=89.38  E-value=0.55  Score=43.17  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.2

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.+|++.|.|. |.||+++|+.+...|++|++.+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999997 99999999999999999999998753

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=89.28  E-value=1.2  Score=42.37  Aligned_cols=35  Identities=37%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .||++.|.|. |.||+.+++.|...|++|++..++.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~   39 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDP   39 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            3789999995 9999999999999999998876654

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=89.26  E-value=0.55  Score=40.12  Aligned_cols=29  Identities=31%  Similarity=0.445  Sum_probs=24.3

Q ss_pred             eEEEEecCHHHHHHHHHHc-cCCCEEEEEc
Q 019081          155 TVFILGFGNIGVELAKRLR-PFGVKIIATK  183 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d  183 (346)
                      +|||+|+|+||+.+++.+. .-++++.+..
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~   31 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAIN   31 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEee
Confidence            7999999999999999876 4578877643

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK06196 oxidoreductase; Provisional

Probab=89.25  E-value=0.4  Score=45.58  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..+.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~   61 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD   61 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4578999999998 88999999999999999999988653

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=89.12  E-value=1.4  Score=42.97  Aligned_cols=31  Identities=26%  Similarity=0.299  Sum_probs=25.7

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCC-CEEEEEcC
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKR  184 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G-~~V~~~d~  184 (346)
                      .+|+|+| .|.+|+.+++.|..+. +++.++.+
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~   36 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAA   36 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEc
Confidence            5899998 9999999999998654 48888733

>PRK05717 oxidoreductase; Validated

Probab=89.11  E-value=0.57  Score=42.76  Aligned_cols=38  Identities=18%  Similarity=0.278  Sum_probs=34.2

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ..+.||++.|.|. |.||+.+|+.+...|++|+..+++.
T Consensus         6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~   44 (255)
T PRK05717          6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR   44 (255)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence            5688999999996 8999999999999999999998764

>PRK07576 short chain dehydrogenase; Provisional

Probab=89.01  E-value=0.59  Score=43.11  Aligned_cols=39  Identities=23%  Similarity=0.363  Sum_probs=34.9

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .++.+|++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~   44 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQE   44 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4688999999998 89999999999999999999998643

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=88.91  E-value=0.67  Score=46.55  Aligned_cols=33  Identities=39%  Similarity=0.597  Sum_probs=28.7

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC------EEEEEcCCCc
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV------KIIATKRSWA  187 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~------~V~~~d~~~~  187 (346)
                      +|.|||+|.+|.++++.|...|.      ++.++|...-
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~I   39 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNI   39 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCc
Confidence            58899999999999999998887      7999986543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK06179 short chain dehydrogenase; Provisional

Probab=88.89  E-value=0.71  Score=42.44  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .++++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~   39 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPA   39 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            3568888884 89999999999999999999998654

>PRK08339 short chain dehydrogenase; Provisional

Probab=88.89  E-value=0.58  Score=43.24  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.||++.|.|. |.||+++|+.|...|++|++++|+..
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~   43 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEE   43 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999997 57999999999999999999998643

>PRK07060 short chain dehydrogenase; Provisional

Probab=88.86  E-value=0.68  Score=41.67  Aligned_cols=39  Identities=31%  Similarity=0.423  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..+.++++.|.|. |.||+.+++.+...|++|++++|+..
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~   44 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAA   44 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3478899999998 89999999999999999999998653

>PRK07774 short chain dehydrogenase; Provisional

Probab=88.80  E-value=0.65  Score=42.00  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.++++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~   41 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAE   41 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999997 99999999999999999999998643

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=88.78  E-value=0.99  Score=44.32  Aligned_cols=35  Identities=34%  Similarity=0.561  Sum_probs=31.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .++|+|+|.|..|+.+++.++.+|++|+.+|.++.
T Consensus        12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~   46 (395)
T PRK09288         12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYAN   46 (395)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            56899999999999999999999999999987653

>PRK15076 alpha-galactosidase; Provisional

Probab=88.77  E-value=0.51  Score=47.43  Aligned_cols=120  Identities=13%  Similarity=0.090  Sum_probs=67.5

Q ss_pred             CeEEEEecCHHHHHHHH--HH---ccC-CCEEEEEcCCCccccccccccchhhhcccccccccccc------CCcCCHHH
Q 019081          154 KTVFILGFGNIGVELAK--RL---RPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK------GCHEDIFE  221 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~--~l---~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~e  221 (346)
                      .+|+|||.|.+|...+-  .+   .++ |.+|+.+|....+....... .         .......      ....++.+
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~---------~~~~~~~~~~~~i~~ttD~~e   71 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-A---------RKLAESLGASAKITATTDRRE   71 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-H---------HHHHHhcCCCeEEEEECCHHH
Confidence            48999999999944433  22   333 56999999876432100000 0         0000110      12457889


Q ss_pred             HhhcCCEEEEeecCCccc-c-----------CCC-----------------C-------HHHHccCCCCcEEEEcCCCCC
Q 019081          222 FASKADVVVCCLSLNKQT-A-----------GIV-----------------N-------KSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       222 ll~~aDiV~~~lPlt~~T-~-----------~li-----------------~-------~~~l~~mk~gailIN~sRg~~  265 (346)
                      .++.||+|+.++-..... .           |++                 +       .+.++...|++++||++-.-=
T Consensus        72 al~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~d  151 (431)
T PRK15076         72 ALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMA  151 (431)
T ss_pred             HhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHH
Confidence            999999999877542111 1           111                 1       122344468999999987765


Q ss_pred             CCHHHHHHHHHhCCCeEEE
Q 019081          266 LDYEAIAHYLECGHLGGLG  284 (346)
Q Consensus       266 vd~~aL~~aL~~g~i~ga~  284 (346)
                      +-+.++. -+...++-|.+
T Consensus       152 ivt~~~~-~~~~~rviG~c  169 (431)
T PRK15076        152 MNTWAMN-RYPGIKTVGLC  169 (431)
T ss_pred             HHHHHHh-cCCCCCEEEEC
Confidence            5555555 22344565553

>PRK06949 short chain dehydrogenase; Provisional

Probab=88.76  E-value=0.65  Score=42.21  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..+.++++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~   44 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVE   44 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3578999999996 99999999999999999999988653

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=88.73  E-value=0.31  Score=46.21  Aligned_cols=44  Identities=34%  Similarity=0.455  Sum_probs=36.7

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      |+......|...+|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus         9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491           9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            44434467899999999999999999999998898 588998754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=88.70  E-value=6.2  Score=37.65  Aligned_cols=101  Identities=18%  Similarity=0.185  Sum_probs=65.9

Q ss_pred             cCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhc
Q 019081          151 LLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK  225 (346)
Q Consensus       151 l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~  225 (346)
                      |.|+|+..+|=| +++.++...+..+||+|....|..-........   .      ....+...+    -..+.++.++.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~---~------a~~~a~~~g~~i~~t~d~~eAv~g  221 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVE---K------AKENAKESGGKITLTEDPEEAVKG  221 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH---H------HHHHHHhcCCeEEEecCHHHHhCC
Confidence            999999999976 688888888889999999876643221000000   0      001111111    23689999999


Q ss_pred             CCEEEEeecCC--cccc-----------CCCCHHHHccCCCCcEEEEc
Q 019081          226 ADVVVCCLSLN--KQTA-----------GIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       226 aDiV~~~lPlt--~~T~-----------~li~~~~l~~mk~gailIN~  260 (346)
                      ||+|..-+...  ++.+           .-+|.+.++.-+++++|.-|
T Consensus       222 ADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC  269 (310)
T COG0078         222 ADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC  269 (310)
T ss_pred             CCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence            99997655432  2221           56778888888888888877

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=88.66  E-value=0.6  Score=42.06  Aligned_cols=37  Identities=27%  Similarity=0.392  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .+.++++.|.| .|.||+.+++.+...|++|++++|+.
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~   40 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG   40 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46789999999 79999999999999999999999874

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=88.63  E-value=0.93  Score=44.17  Aligned_cols=88  Identities=19%  Similarity=0.198  Sum_probs=49.3

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCC---EEEEEc--CCCccccccccccchhhhccccccccccccCCcCCHHHHhhc
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGV---KIIATK--RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~---~V~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (346)
                      ...+|+|+|. |.+|+.+.+.|..-++   ++..+.  ++..+...       +        ....-.....+. +.+.+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~-------~--------~~~~~~v~~~~~-~~~~~   69 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVT-------F--------EGRDYTVEELTE-DSFDG   69 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeee-------e--------cCceeEEEeCCH-HHHcC
Confidence            3568999995 9999999999987554   343332  22111000       0        000000011122 34588


Q ss_pred             CCEEEEeecCCccccCCCCHHHHcc-CCCCcEEEEcC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIA  261 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~-mk~gailIN~s  261 (346)
                      +|+|++++|.. .     ..+.... .+.|+.+|+.|
T Consensus        70 ~D~vf~a~p~~-~-----s~~~~~~~~~~g~~VIDlS  100 (344)
T PLN02383         70 VDIALFSAGGS-I-----SKKFGPIAVDKGAVVVDNS  100 (344)
T ss_pred             CCEEEECCCcH-H-----HHHHHHHHHhCCCEEEECC
Confidence            99999999854 2     2233222 25688888887

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=88.61  E-value=0.78  Score=43.52  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=31.2

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .|.+|.|.| .|.+|..+++.++.+|++|++.+++.
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~  173 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD  173 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999 59999999999999999999887654

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK05866 short chain dehydrogenase; Provisional

Probab=88.54  E-value=0.75  Score=43.38  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=36.3

Q ss_pred             CccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+..+.|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus        34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~   75 (293)
T PRK05866         34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRED   75 (293)
T ss_pred             CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            356789999999996 99999999999999999999998753

>PRK07831 short chain dehydrogenase; Provisional

Probab=88.53  E-value=0.59  Score=42.83  Aligned_cols=38  Identities=26%  Similarity=0.381  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEec-C-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-G-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.++++.|.|. | .||+++++.+...|++|++.+++..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~   53 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHER   53 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            467899999997 6 6999999999999999999887653

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=88.46  E-value=7.7  Score=37.13  Aligned_cols=36  Identities=11%  Similarity=0.065  Sum_probs=30.5

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCC
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      .+.|++|+++|= -++.++++..+..||++|.+..|.
T Consensus       144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~  180 (302)
T PRK14805        144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPP  180 (302)
T ss_pred             CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCc
Confidence            478999999997 456788888999999999998764

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=88.46  E-value=1.7  Score=41.70  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=27.8

Q ss_pred             CeEEEEecCHHHHHHHHHHcc--CCCEEEEEcCCC
Q 019081          154 KTVFILGFGNIGVELAKRLRP--FGVKIIATKRSW  186 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~--~G~~V~~~d~~~  186 (346)
                      ++|+|||.|.||+.+|-.+..  +|-++..||...
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~   35 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINE   35 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEccc
Confidence            489999999999999998853  455899999873

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=88.40  E-value=0.5  Score=45.10  Aligned_cols=124  Identities=18%  Similarity=0.140  Sum_probs=69.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      .+++|+|.|.||.-+|-.|...|.+|..++|...... ......++.+...  .... .......-.+....+|+|++++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~-~i~~~~Gl~i~~~--g~~~-~~~~~~~~~~~~~~~D~viv~v   78 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLA-AYQQAGGLTLVEQ--GQAS-LYAIPAETADAAEPIHRLLLAC   78 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHH-HHhhcCCeEEeeC--Ccce-eeccCCCCcccccccCEEEEEC
Confidence            4799999999999999999999999999998532110 0000001100000  0000 0000011112246789999987


Q ss_pred             cCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEE
Q 019081          234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG  284 (346)
Q Consensus       234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~  284 (346)
                      -.. ++...+ +.....+.+++.+|-. --++-.++.+.+.+...++.++.
T Consensus        79 K~~-~~~~al-~~l~~~l~~~t~vv~l-QNGv~~~e~l~~~~~~~~v~~g~  126 (305)
T PRK05708         79 KAY-DAEPAV-ASLAHRLAPGAELLLL-QNGLGSQDAVAARVPHARCIFAS  126 (305)
T ss_pred             CHH-hHHHHH-HHHHhhCCCCCEEEEE-eCCCCCHHHHHHhCCCCcEEEEE
Confidence            533 233222 2233445677776666 44455667777887666665543

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.39  E-value=0.67  Score=42.47  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=32.6

Q ss_pred             ccCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCC
Q 019081          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       150 ~l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      .+.||++.|.|.+   .||+++|+.|...|++|+..+|+
T Consensus         4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            3789999999986   89999999999999999998875

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.30  E-value=0.62  Score=43.35  Aligned_cols=36  Identities=28%  Similarity=0.391  Sum_probs=32.6

Q ss_pred             cCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCCC
Q 019081          151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       151 l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +.||++.|.|.+   .||+++|+.|...|++|+..+|+.
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~   43 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGE   43 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCch
Confidence            678999999998   699999999999999999988753

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.25  E-value=0.65  Score=42.70  Aligned_cols=38  Identities=24%  Similarity=0.346  Sum_probs=33.5

Q ss_pred             cccCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCCC
Q 019081          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ..+.||++.|.|.+   .||+++|+.+...|++|+..+++.
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~   46 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND   46 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            45789999999986   799999999999999999888764

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=88.07  E-value=0.53  Score=49.33  Aligned_cols=37  Identities=30%  Similarity=0.482  Sum_probs=32.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~  185 (346)
                      ..|.+.+|.|+|+|.+|..+|+.|.+.|. +++.+|..
T Consensus       334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            57899999999999999999999999998 57777753

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK09186 flagellin modification protein A; Provisional

Probab=88.01  E-value=0.64  Score=42.20  Aligned_cols=37  Identities=38%  Similarity=0.455  Sum_probs=32.8

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~   39 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKE   39 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChH
Confidence            56899999996 79999999999999999999987653

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=88.00  E-value=1.7  Score=41.68  Aligned_cols=75  Identities=19%  Similarity=0.325  Sum_probs=48.9

Q ss_pred             eEEEEec-CHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          155 TVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      +|+|+|. |..|.++.++|... .+++.....+...                          ...+.+++++++|+++++
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~--------------------------~~~~~~~~~~~~D~vFla   56 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK--------------------------DAAERAKLLNAADVAILC   56 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc--------------------------CcCCHhHhhcCCCEEEEC
Confidence            7899985 99999999999864 4566554321100                          112455777889999999


Q ss_pred             ecCCccccCCCCHHHHcc-CCCCcEEEEcC
Q 019081          233 LSLNKQTAGIVNKSFLSS-MKKGSLLVNIA  261 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~-mk~gailIN~s  261 (346)
                      +|.. .+.     +.... .+.|+.+|+.|
T Consensus        57 lp~~-~s~-----~~~~~~~~~g~~VIDlS   80 (310)
T TIGR01851        57 LPDD-AAR-----EAVSLVDNPNTCIIDAS   80 (310)
T ss_pred             CCHH-HHH-----HHHHHHHhCCCEEEECC
Confidence            9854 222     22222 24678888887

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=87.99  E-value=0.75  Score=49.94  Aligned_cols=111  Identities=20%  Similarity=0.158  Sum_probs=64.1

Q ss_pred             CeEEEEecCHHHHHH-HHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVEL-AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~v-A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      +++.|+|+|.+|.+. |+.|+..|++|.++|......... ..           .........  .-.+.+..+|+|+..
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~-L~-----------~~gi~~~~g--~~~~~~~~~d~vV~S   70 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEK-LK-----------AKGARFFLG--HQEEHVPEDAVVVYS   70 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHH-HH-----------HCCCEEeCC--CCHHHcCCCCEEEEC
Confidence            368999999999998 999999999999999754321000 00           000000001  122556789998775


Q ss_pred             ecCCccc----------cCCCCHHHH-cc-CCC-CcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          233 LSLNKQT----------AGIVNKSFL-SS-MKK-GSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       233 lPlt~~T----------~~li~~~~l-~~-mk~-gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      ---.+.+          ..++++-.+ .. ++. ..+-|-=+.|..-...=+...|++.
T Consensus        71 pgI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~  129 (809)
T PRK14573         71 SSISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA  129 (809)
T ss_pred             CCcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence            2222221          123444333 23 332 2445555678877777777777763

>PRK06172 short chain dehydrogenase; Provisional

Probab=87.98  E-value=0.79  Score=41.62  Aligned_cols=38  Identities=29%  Similarity=0.381  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.+|++.|.|. |.||+.+|+.|...|++|++++|+..
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   42 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA   42 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999996 79999999999999999999998754

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=87.98  E-value=2.4  Score=42.80  Aligned_cols=115  Identities=16%  Similarity=0.178  Sum_probs=66.1

Q ss_pred             eEEEEec-CHHHHHHHHHHccC-------CC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081          155 TVFILGF-GNIGVELAKRLRPF-------GV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~-------G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (346)
                      +|+|||. |.||..+|-.+...       |.  +++.+|++............     +... .+.....-..+-.+.++
T Consensus       102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~-----daa~-~~~~~v~i~~~~ye~~k  175 (444)
T PLN00112        102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELE-----DSLY-PLLREVSIGIDPYEVFQ  175 (444)
T ss_pred             EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHH-----Hhhh-hhcCceEEecCCHHHhC
Confidence            8999999 99999999988654       44  78888987654211110000     0000 00000000123457789


Q ss_pred             cCCEEEEeecCCccccCC------------CC--HHHHcc-CCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          225 KADVVVCCLSLNKQTAGI------------VN--KSFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~l------------i~--~~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +||+|++..-. +...++            +.  ...+.. -.+++++|.++  ..+|.-..+-.=.+|
T Consensus       176 daDiVVitAG~-prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~sg  241 (444)
T PLN00112        176 DAEWALLIGAK-PRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNAP  241 (444)
T ss_pred             cCCEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHcC
Confidence            99999997643 232332            11  123444 47899999996  667766655544443

>PRK05867 short chain dehydrogenase; Provisional

Probab=87.96  E-value=0.76  Score=41.86  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.||++.|.|. |.||+++|+.|...|++|++.+++..
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~   44 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLD   44 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            478999999997 89999999999999999999988653

>PRK07890 short chain dehydrogenase; Provisional

Probab=87.95  E-value=0.69  Score=42.07  Aligned_cols=37  Identities=30%  Similarity=0.437  Sum_probs=33.2

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +.+|++.|.|. |.||+.+|+.+...|++|++.+|+..
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~   40 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE   40 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            57899999996 89999999999999999999998653

>PRK08862 short chain dehydrogenase; Provisional

Probab=87.95  E-value=0.71  Score=41.84  Aligned_cols=38  Identities=13%  Similarity=0.337  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++.||++.|.|.+. ||+++|+.+...|++|+..+|+..
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS   40 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            47899999999876 999999999999999999988654

>PRK06398 aldose dehydrogenase; Validated

Probab=87.92  E-value=0.79  Score=42.11  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++.||++.|.|. |.||+++|+.+...|++|+..+|+..
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~   41 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP   41 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            578999999995 69999999999999999999988653

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.91  E-value=0.65  Score=46.69  Aligned_cols=33  Identities=21%  Similarity=0.504  Sum_probs=30.3

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +|.|||+|..|.+.|+.|...|++|.++|+...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            689999999999999999999999999997654

>PRK12320 hypothetical protein; Provisional

Probab=87.89  E-value=1.1  Score=47.77  Aligned_cols=69  Identities=16%  Similarity=0.195  Sum_probs=45.8

Q ss_pred             eEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       155 tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      +|.|.| .|-||+.+++.|...|++|+++++.........             .+....-.....+.+++..+|+|+.+.
T Consensus         2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~~~~-------------ve~v~~Dl~d~~l~~al~~~D~VIHLA   68 (699)
T PRK12320          2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDALDPR-------------VDYVCASLRNPVLQELAGEADAVIHLA   68 (699)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcccCC-------------ceEEEccCCCHHHHHHhcCCCEEEEcC
Confidence            688999 699999999999999999999997543210000             011110001123567778899999988


Q ss_pred             cCC
Q 019081          234 SLN  236 (346)
Q Consensus       234 Plt  236 (346)
                      +..
T Consensus        69 a~~   71 (699)
T PRK12320         69 PVD   71 (699)
T ss_pred             ccC
Confidence            754

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=87.83  E-value=0.76  Score=42.16  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=32.4

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +.+|++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   39 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA   39 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            67899999997 6899999999999999999998864

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=87.75  E-value=0.81  Score=33.49  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=26.6

Q ss_pred             EEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       158 IiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      |||.|.-|-..|..|+..|++|.+++++..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            899999999999999999999999998653

...

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=87.75  E-value=1.1  Score=41.43  Aligned_cols=64  Identities=23%  Similarity=0.174  Sum_probs=41.3

Q ss_pred             EEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081          157 FILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       157 gIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP  234 (346)
                      .|.| .|.||+.+++.|...|++|++++|+.........             ...... ......+.+..+|+|+.+..
T Consensus         2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-------------~~~~~~-~~~~~~~~~~~~D~Vvh~a~   66 (292)
T TIGR01777         2 LITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW-------------EGYKPW-APLAESEALEGADAVINLAG   66 (292)
T ss_pred             EEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc-------------eeeecc-cccchhhhcCCCCEEEECCC
Confidence            4666 6999999999999899999999987654211000             000000 11344566788998877664

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK08264 short chain dehydrogenase; Validated

Probab=87.73  E-value=0.72  Score=41.44  Aligned_cols=39  Identities=31%  Similarity=0.437  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      .+.++++.|+|. |.||+.+|+.|...|+ +|+.++|+..+
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~   43 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES   43 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence            467899999995 9999999999999999 99999886543

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=87.67  E-value=0.65  Score=46.97  Aligned_cols=34  Identities=32%  Similarity=0.521  Sum_probs=31.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +++.|||.|.||-++|..++.||.+|+++.+...
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~  207 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR  207 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            5799999999999999999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	346
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		7e-26
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		7e-26
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		1e-24
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		1e-24
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		8e-24
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		2e-23
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		8e-22
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		2e-21
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		2e-21
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		4e-21
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		4e-21
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		1e-20
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		1e-20
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		1e-20
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		2e-20
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		2e-20
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		3e-20
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		3e-20
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		4e-20
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		7e-20
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		9e-20
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		2e-19
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		6e-19
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		2e-18
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		4e-18
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		4e-18
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		4e-18
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		6e-18
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		2e-17
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		3e-17
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		2e-16
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		2e-16
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		2e-16
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		2e-16
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		2e-16
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		3e-16
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		4e-16
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		8e-16
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		8e-16
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		9e-16
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		9e-16
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		2e-15
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		2e-15
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		2e-14
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		4e-13
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		5e-13
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		7e-13
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		2e-12
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		9e-12
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		1e-11
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-11
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		2e-11
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		3e-11
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		4e-10
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		4e-07
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		2e-06
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		6e-06
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		1e-05
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		5e-05

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 133/266 (50%), Gaps = 32/266 (12%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           + V  T ++    +  A ++K+I     G + +D+  AT+ GI V ++ G ++    + A
Sbjct: 46  IIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLS---EAVA 102
Query: 118 ELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTG----ETLLGKTVFILGFGNIGVELA 169
           E T+ L++ L+RK       +R    +    + TG    E+L GK V ILG G IG  +A
Sbjct: 103 EFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIA 162
Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
           +RL PFGVK+      W+ H +V+ +                 K  + DI E   K+D+V
Sbjct: 163 RRLIPFGVKLY----YWSRHRKVNVEKEL--------------KARYMDIDELLEKSDIV 204
Query: 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289
           +  L L + T  I+N+  +  ++ G  LVNI RG L+D +A+   ++ G L G   DV  
Sbjct: 205 ILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE 263
Query: 290 TEPFDPNDPILKFK-NVLITPHVGGV 314
            EP   ++ + K++   ++TPH  G+
Sbjct: 264 KEPVREHE-LFKYEWETVLTPHYAGL 288

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 129/272 (47%), Gaps = 33/272 (12%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K+I    VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E   
Sbjct: 77  LKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 130
Query: 137 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187
           AIE+ K G  T        G  L   TV I+G G IG  +A+RL+PFGV + + T R   
Sbjct: 131 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPR 190
Query: 188 SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF 247
                  Q+  ++                    E A+++D +V   SL   T G+ NK F
Sbjct: 191 PEEAAEFQAEFVSTP------------------ELAAQSDFIVVACSLTPATEGLCNKDF 232
Query: 248 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLI 307
              MK+ ++ +NI+RG +++ + +   L  G +   G+DV   EP   N P+L  KN +I
Sbjct: 233 FQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVI 292
Query: 308 TPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 339
            PH+G  T  +  +M+ +  +  L    G P+
Sbjct: 293 LPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 324

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 25/279 (8%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V     +D+  ++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S A
Sbjct: 47  LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 103
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           E  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  F
Sbjct: 104 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 163
Query: 176 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 235
           G  ++A    + S      +++ L ++   +DDL+             ++AD +   L  
Sbjct: 164 GAYVVAYD-PYVS----PARAAQLGIELLSLDDLL-------------ARADFISVHLPK 205
Query: 236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 295
             +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G+DV  TEP   
Sbjct: 206 TPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT- 264
Query: 296 NDPILKFKNVLITPHVGGVT-EHSYRSMAKVVGDVALQL 333
           + P+ +   V++TPH+G  T E   R+   V   V L L
Sbjct: 265 DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 303

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 25/279 (8%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V     +D+  ++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S A
Sbjct: 48  LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAA 104
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF 175
           E  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  F
Sbjct: 105 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 164
Query: 176 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 235
           G  ++A    + S      +++ L ++   +DDL+             ++AD +   L  
Sbjct: 165 GAYVVAYD-PYVS----PARAAQLGIELLSLDDLL-------------ARADFISVHLPK 206
Query: 236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 295
             +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G+DV  TEP   
Sbjct: 207 TPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT- 265
Query: 296 NDPILKFKNVLITPHVGGVT-EHSYRSMAKVVGDVALQL 333
           + P+ +   V++TPH+G  T E   R+   V   V L L
Sbjct: 266 DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLAL 304

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  107 bits (268), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 126/271 (46%), Gaps = 33/271 (12%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K+I    VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E   
Sbjct: 75  LKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTD---TTAELAVSLLLTTCRRLPE--- 128
Query: 137 AIEQKKLGVPT--------GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187
           AIE+ K G  T        G  L   TV I+G G IG  +A+RL+PFGV + + T R   
Sbjct: 129 AIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPR 188
Query: 188 SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF 247
                  Q+  ++                    E A+++D +V   SL   T G+ NK F
Sbjct: 189 PEEAAEFQAEFVSTP------------------ELAAQSDFIVVACSLTPATEGLCNKDF 230
Query: 248 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLI 307
               K+ ++ +NI+RG +++ + +   L  G +   G+DV   EP   N P+L  KN +I
Sbjct: 231 FQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVI 290
Query: 308 TPHVGGVTEHSYRSMAKVVGDVALQLHAGTP 338
            PH+G  T  +  + + +  +  L    G P
Sbjct: 291 LPHIGSATHRTRNTXSLLAANNLLAGLRGEP 321

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/291 (29%), Positives = 140/291 (48%), Gaps = 32/291 (10%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L V    ++ ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S A
Sbjct: 71  LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAA 127
Query: 118 ELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           ELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R+
Sbjct: 128 ELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRM 184
Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
           + FG+K I      +     S     L +               E+I+      D +   
Sbjct: 185 QSFGMKTIGYDPIISPEVSASFGVQQLPL---------------EEIWPL---CDFITVH 226
Query: 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 292
             L   T G++N +  +  KKG  +VN ARGG++D  A+   L+ G   G  +DV   EP
Sbjct: 227 TPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP 286
Query: 293 FDPND-PILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342
             P D  ++  +NV+  PH+G  T+ +     + +    + +  G  LTG+
Sbjct: 287 --PRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGV 335

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 128/255 (50%), Gaps = 27/255 (10%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           ++    I  A ++K+I + GVGL+ +D+ AA   GI+V   P     ++ S AEL + LM
Sbjct: 55  KVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLM 111
Query: 125 LGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
             + RK      +MR  +  KK  +  G  L GKT+ I+GFG IG ++AK     G+ I+
Sbjct: 112 FSVARKIAFADRKMREGVWAKKEAM--GIELEGKTIGIIGFGRIGYQVAKIANALGMNIL 169
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
                   +     +  A  V    +D           +     ++DVV   + L + T 
Sbjct: 170 L-------YDPYPNEERAKEVNGKFVD-----------LETLLKESDVVTIHVPLVESTY 211
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 300
            ++N+  L  MKK ++L+N +RG ++D  A+   L+ G + G G+DV   EP   + P+ 
Sbjct: 212 HLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLT 271
Query: 301 KFKNVLITPHVGGVT 315
           KF NV++TPH+G  T
Sbjct: 272 KFDNVVLTPHIGAST 286

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 46/273 (16%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT------------GN 112
           R+D+  + RA  +K+I  + VG++ VD+ AA   GI+V   PG +T              
Sbjct: 54  RIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAV 113
Query: 113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           A    E   Y   GL +  +   +     +            T+ ++G G IG  +AKR 
Sbjct: 114 ARRVVEGAAYARDGLWKAWHPELLLGLDLQG----------LTLGLVGMGRIGQAVAKRA 163
Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
             FG++++   R+             L      +++L+ E             ADVV   
Sbjct: 164 LAFGMRVVYHART----------PKPLPYPFLSLEELLKE-------------ADVVSLH 200
Query: 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 292
             L  +T  ++N+  L +MK+G++L+N ARG L+D EA+   L  GHL G G+DV   EP
Sbjct: 201 TPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEP 259
Query: 293 FDPNDPILKFKNVLITPHVGGVTEHSYRSMAKV 325
             P  P+    N +ITPH+G     +   MA+V
Sbjct: 260 LPPGHPLYALPNAVITPHIGSAGRTTRERMAEV 292

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 139/285 (48%), Gaps = 25/285 (8%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L  + + R+D      A +++++  + VG + +DI  AT+ GI V   P  +T   A  A
Sbjct: 49  LVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLA 108
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT------GETLLGKTVFILGFGNIGVELAKR 171
              +      + K +    + E KK GV        G  + GKT+ I+G G IG  +AKR
Sbjct: 109 FALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR 168
Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
            + F ++I+     + S ++       L  +   ++DL+ E             +D VV 
Sbjct: 169 AKGFNMRIL-----YYSRTRKEEVERELNAEFKPLEDLLRE-------------SDFVVL 210
Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
            + L ++T  ++N+  L  MKK ++L+NIARG ++D  A+   L+ G + G G+DV   E
Sbjct: 211 AVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE 270
Query: 292 PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
           P+  N+ + K  NV++TPH+G  +  +   MA++V    +    G
Sbjct: 271 PY-YNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRG 314

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 32/270 (11%)
Query: 56  YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 114
           +H   +   R+D     +A ++KL++  GVG + +D++   + G K++ +  +VTG N  
Sbjct: 70  FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 122
Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 170
           S AE  +  ML L+R        I      V         + GKT+  +G G IG  + +
Sbjct: 123 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 182
Query: 171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230
           RL PF  K +      A       +  A  V+N               I E  ++AD+V 
Sbjct: 183 RLVPFNPKELLYYDYQALPKDAEEKVGARRVEN---------------IEELVAQADIVT 227
Query: 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 290
               L+  T G++NK  LS  KKG+ LVN ARG +   E +A  LE G L G G DV + 
Sbjct: 228 VNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 287
Query: 291 EPFDPNDPILKFKNVL-----ITPHVGGVT 315
           +P   + P    +N       +TPH  G T
Sbjct: 288 QPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 317

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/270 (29%), Positives = 121/270 (44%), Gaps = 32/270 (11%)
Query: 56  YHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG-NAA 114
           +H   +   R+D     +A ++KL++  GVG + +D++   + G K++ +  +VTG N  
Sbjct: 69  FHPAYITKERID-----KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVL--EVTGSNVV 121
Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT----GETLLGKTVFILGFGNIGVELAK 170
           S AE  +  ML L+R        I      V         + GKT+  +G G IG  + +
Sbjct: 122 SVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLE 181
Query: 171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230
           RL PF  K +      A       +  A  V+N               I E  ++AD+V 
Sbjct: 182 RLVPFNPKELLYYDYQALPKDAEEKVGARRVEN---------------IEELVAQADIVT 226
Query: 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 290
               L+  T G++NK  LS  KKG+ LVN ARG +   E +A  LE G L G G DV + 
Sbjct: 227 VNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 286
Query: 291 EPFDPNDPILKFKNVL-----ITPHVGGVT 315
           +P   + P    +N       +TPH  G T
Sbjct: 287 QPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 316

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 136/273 (49%), Gaps = 32/273 (11%)
Query: 54  ANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGN 112
           ++ H+  +++  +L     + AN++  +  F VG   V++ AA + GI V   P     N
Sbjct: 57  SSAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAP---FSN 113
Query: 113 AASCAELTIYLMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELA 169
             S AEL I  ++ L+R+     ++      +K  + + E + GKT+ I+G+GNIG ++ 
Sbjct: 114 TRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSRE-VRGKTLGIVGYGNIGSQVG 172
Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
                 G+    T R + +  ++   +   A     +D+L+               +DVV
Sbjct: 173 NLAESLGM----TVRYYDTSDKLQYGNVKPAAS---LDELL-------------KTSDVV 212
Query: 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289
              +  +K T+ ++ ++ L  MKKG+ L+N ARG  +D EA+A  L+ GHL G  IDV  
Sbjct: 213 SLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFP 272
Query: 290 TEPFDPND----PILKFKNVLITPHVGGVTEHS 318
            EP    +    P+   +NV++TPH+GG TE +
Sbjct: 273 VEPASNGERFSTPLQGLENVILTPHIGGSTEEA 305

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 84  GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL 143
           G+G + +D+ AA   G+ VA + G    N  S AE  +  +L L+R        + + + 
Sbjct: 100 GIGSDHIDLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEW 156
Query: 144 GVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199
            V         L GKT+  +G G IG  L +RL+PFG  ++   R   +  ++  ++ A 
Sbjct: 157 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA-PELEKETGAK 215
Query: 200 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 259
            V               ED+ E   K DV+V  + L ++T G+ NK  +  +KKG L+VN
Sbjct: 216 FV---------------EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVN 260
Query: 260 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 315
            ARG +++ +A+   +E GH+GG   DV   +P   + P     N  +TPH  G T
Sbjct: 261 NARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 23/236 (9%)
Query: 84  GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL 143
           G+G + +D+ AA   G+ VA + G    N  S AE  +  +L L+R        + + + 
Sbjct: 94  GIGSDHIDLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEW 150
Query: 144 GVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199
            V         L GKT+  +G G IG  L +RL+PFG  ++   R   +  ++  ++ A 
Sbjct: 151 NVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA-PELEKETGAK 209
Query: 200 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 259
            V               ED+ E   K DV+V  + L ++T G+ NK  +  +KKG L+VN
Sbjct: 210 FV---------------EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVN 254
Query: 260 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 315
            ARG +++ +A+   +E GH+GG   DV   +P   + P     N  +TPH  G T
Sbjct: 255 NARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 130/278 (46%), Gaps = 32/278 (11%)
Query: 67  DSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126
           D+  I    +++++  F VGL+ VD+      G++V   P  +T + A   +L I L+L 
Sbjct: 78  DAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVA---DLAIGLILA 134
Query: 127 LLRKQNEMRMAIEQK--KLG-VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183
           +LR+  E    + +   K G         GK V I+G G IG+ +A+R   F   I    
Sbjct: 135 VLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFS 194
Query: 184 RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 243
           RS   ++  +   S                     + E AS +D++V    L  +T  I+
Sbjct: 195 RSKKPNTNYTYYGS---------------------VVELASNSDILVVACPLTPETTHII 233
Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK 303
           N+  + ++    +L+NI RG  +D   +   L  G LGG G+DV   EP  P + +   +
Sbjct: 234 NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLE 292
Query: 304 NVLITPHVGGVTEHSYRSMAK-VVGDVALQLH-AGTPL 339
           NV++ PHVG  T  + + MA  VVG+  L+ H +G PL
Sbjct: 293 NVVLLPHVGSGTVETRKVMADLVVGN--LEAHFSGKPL 328

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 125/270 (46%), Gaps = 30/270 (11%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
           T+ L    + +   +++I++ G G + VDI AA   GI V  IP   +      A+ TI 
Sbjct: 56  TITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIP---SAAVEETADSTIC 112
Query: 123 LMLGLLRKQNEMRMA---------IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLR 173
            +L L R+   +  A         +EQ +        + G+T+ ++GFG  G  +A R +
Sbjct: 113 HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAK 172
Query: 174 PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 233
            FG  +I     +  + Q   + S    +   + DL+ +  C            V + C 
Sbjct: 173 AFGFSVI----FYDPYLQDGIERSLGVQRVYTLQDLLYQSDC------------VSLHC- 215
Query: 234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF 293
           +LN+    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +DV  +EPF
Sbjct: 216 NLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPF 275
Query: 294 D-PNDPILKFKNVLITPHVGGVTEHSYRSM 322
                P+    N++ TPH    +E +   M
Sbjct: 276 SFAQGPLKDAPNLICTPHTAWYSEQASLEM 305

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 120/271 (44%), Gaps = 29/271 (10%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           +K I  + +G + +D++A    GIKV   P  VT    + AE+ + L+LG  R+  E   
Sbjct: 68  IKCISTYSIGFDHIDLDACKARGIKVGNAPHGVT---VATAEIAMLLLLGSARRAGEGEK 124
Query: 137 AIEQKKL--GVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--IATKRSWASH 189
            I  +      P    GE L  KT+ I GFG+IG  LAKR + F + I    T R+ +S 
Sbjct: 125 MIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA-SSS 183
Query: 190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS 249
            + S Q++                  H+ +    S +           +T    NK+ + 
Sbjct: 184 DEASYQAT-----------------FHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIK 226
Query: 250 SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITP 309
           S+ +G+++VN ARG L+D E +   LE G L   G DV   EP + N+      N  + P
Sbjct: 227 SLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFP 285
Query: 310 HVGGVTEHSYRSMAKVVGDVALQLHAGTPLT 340
           H+G     +   MA    D+   L  G  ++
Sbjct: 286 HIGSAATQAREDMAHQANDLIDALFGGADMS 316

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 40/291 (13%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L  + I+ A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  +L
Sbjct: 65  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 121
Query: 126 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 179
            LLR   E      +    KL   + E   GK + I+G+G+IG +L       G+ +   
Sbjct: 122 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGMYVYFY 180
Query: 180 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
            I  K    + +QV   S  L                        + +DVV   +  N  
Sbjct: 181 DIENKLPLGNATQVQHLSDLL------------------------NMSDVVSLHVPENPS 216
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 297
           T  ++    +S MK GSLL+N +RG ++D  A+A  L   HL G  IDV  TEP   +D 
Sbjct: 217 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDP 276
Query: 298 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 344
              P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct: 277 FTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 40/291 (13%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L  + I+ A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  +L
Sbjct: 65  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 121
Query: 126 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 179
            LLR   E      +    KL   + E   GK + I+G+G+IG +L       G+ +   
Sbjct: 122 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGMYVYFY 180
Query: 180 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
            I  K    + +QV   S  L                        + +DVV   +  N  
Sbjct: 181 DIENKLPLGNATQVQHLSDLL------------------------NMSDVVSLHVPENPS 216
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 297
           T  ++    +S MK GSLL+N +RG ++D  A+A  L   HL G  IDV  TEP   +D 
Sbjct: 217 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDP 276
Query: 298 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 344
              P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct: 277 FTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 133/279 (47%), Gaps = 34/279 (12%)
Query: 55  NYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNA 113
           NY + VV++  ++  + I +  ++K+I + G+GL+ +D   A +  IKV   PG  T   
Sbjct: 46  NYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTD-- 103
Query: 114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAK 170
            S  ELTI LM+   RK   M  ++   K G+     G  L GKT+ I+GFG IG ++  
Sbjct: 104 -SAVELTIGLMIAAARK---MYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGI 159
Query: 171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230
                G+K++A              + A++++                  E    +DV+ 
Sbjct: 160 IANAMGMKVLAYDILDIREKAEKINAKAVSLE------------------ELLKNSDVIS 201
Query: 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 290
             ++++K    I++      MK   ++VN +R   ++ +A+  Y++ G +     DV W 
Sbjct: 202 LHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWN 261
Query: 291 EPFDPND----PILKFKNVLITPHVGGVTEHSYRSMAKV 325
           EP  P +     +LK + V++T H+G  T+ + + +A++
Sbjct: 262 EP--PKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEM 298

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 135/285 (47%), Gaps = 25/285 (8%)
Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L    + R+D      A +++++  + VG + +DI  AT+ GI V   P  +T   A  A
Sbjct: 49  LVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLA 108
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT------GETLLGKTVFILGFGNIGVELAKR 171
              +      + K +    + E KK GV        G  + GKT+ I+G G IG  +AKR
Sbjct: 109 FALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR 168
Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
            + F  +I+     + S ++       L  +   ++DL+ E             +D VV 
Sbjct: 169 AKGFNXRIL-----YYSRTRKEEVERELNAEFKPLEDLLRE-------------SDFVVL 210
Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
            + L ++T  ++N+  L   KK ++L+NIARG ++D  A+   L+ G + G G+DV   E
Sbjct: 211 AVPLTRETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE 270
Query: 292 PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
           P+  N+ + K  NV++TPH+G  +  +    A++V    +    G
Sbjct: 271 PY-YNEELFKLDNVVLTPHIGSASFGAREGXAELVAKNLIAFKRG 314

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 117/254 (46%), Gaps = 29/254 (11%)
Query: 77  MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM 136
           + +I   GVG + VD+  A R  I V   PG +   A   A+L I L L +LR+  +   
Sbjct: 94  LGIIAINGVGTDKVDLARARRRNIDVTTTPGVL---ADDVADLGIALXLAVLRRVGDGDR 150
Query: 137 AIEQKKLG----VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
            + + +      +P G +  GK + +LG G IG  LA R   FG  +    R W      
Sbjct: 151 LVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSV----RYW------ 200
Query: 193 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 252
               S L+  + I          H+   + A  +DV+  C++ +  T  IV+ S L ++ 
Sbjct: 201 --NRSTLSGVDWI---------AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALG 249
Query: 253 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 312
              ++VN+ARG ++D +A+   L+ G + G G+DV   EP   ++      N ++ PH G
Sbjct: 250 PEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSE-FHTTPNTVLXPHQG 308
Query: 313 GVTEHSYRSMAKVV 326
             T  +  +  K+V
Sbjct: 309 SATVETRXAXGKLV 322

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 129/291 (44%), Gaps = 40/291 (13%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L  + I+ A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  +L
Sbjct: 59  LTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 115
Query: 126 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 179
            LLR   E      +    KL   + E   GK + I+G+G+IG +L       G  +   
Sbjct: 116 LLLRGVPEANAKAHRGVGNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGXYVYFY 174
Query: 180 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
            I  K    + +QV   S  L                        + +DVV   +  N  
Sbjct: 175 DIENKLPLGNATQVQHLSDLL------------------------NXSDVVSLHVPENPS 210
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 297
           T        +S  K GSLL+N +RG ++D  A+A  L   HL G  IDV  TEP   +D 
Sbjct: 211 TKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDP 270
Query: 298 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 344
              P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct: 271 FTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 321

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 132/291 (45%), Gaps = 40/291 (13%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L  + I+ A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  +L
Sbjct: 64  LTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 120
Query: 126 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 179
            LLR   E      +    KL   + E   GK + I+G+G+IG +L       G+ +   
Sbjct: 121 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGMYVYFY 179
Query: 180 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
            I  K    + +QV   S  L                        + +DVV   +  N  
Sbjct: 180 DIENKLPLGNATQVQHLSDLL------------------------NMSDVVSLHVPENPS 215
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 297
           T  ++    +S MK GSLL+N +RG ++D  A+   L   HL G  IDV  TEP   +D 
Sbjct: 216 TKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP 275
Query: 298 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 344
              P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct: 276 FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 326

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 24/267 (8%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Query: 177 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN 236
             ++     +  +     + +    +   + DL+    C            V + C  LN
Sbjct: 195 FNVL----FYDPYLSDGIERALGLQRVSTLQDLLFHSDC------------VTLHC-GLN 237
Query: 237 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-P 295
           +    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +DV  +EPF   
Sbjct: 238 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 297
Query: 296 NDPILKFKNVLITPHVGGVTEHSYRSM 322
             P+    N++ TPH    +E +   M
Sbjct: 298 QGPLKDAPNLICTPHAAWYSEQASIEM 324

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 24/267 (8%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 194
Query: 177 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN 236
             ++     +  +     + +    +   + DL+    C            V + C  LN
Sbjct: 195 FNVL----FYDPYLSDGIERALGLQRVSTLQDLLFHSDC------------VTLHC-GLN 237
Query: 237 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-P 295
           +    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +DV  +EPF   
Sbjct: 238 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 297
Query: 296 NDPILKFKNVLITPHVGGVTEHSYRSM 322
             P+    N++ TPH    +E +   M
Sbjct: 298 QGPLKDAPNLICTPHAAWYSEQASIEM 324

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 123/268 (45%), Gaps = 26/268 (9%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 72  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 131
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G G +G  +A R + FG
Sbjct: 132 NLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFG 191
Query: 177 VKIIATKRSWASHSQVSCQSSALAVKN-GIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 235
             ++      +   +      AL ++    + DL+    C            V + C  L
Sbjct: 192 FNVLFYDPYLSDGVE-----RALGLQRVSTLQDLLFHSDC------------VTLHC-GL 233
Query: 236 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD- 294
           N+    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +DV  +EPF  
Sbjct: 234 NEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSF 293
Query: 295 PNDPILKFKNVLITPHVGGVTEHSYRSM 322
              P+    N++ TPH    +E +   M
Sbjct: 294 SQGPLKDAPNLICTPHAAWYSEQASIEM 321

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 118/268 (44%), Gaps = 30/268 (11%)
Query: 58  LCVVKTMRLDSNCISRANQ-MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 116
           L V  T  + +  I +    +K I    VG + +D  AA   GIKV   P DV  +A  C
Sbjct: 75  LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTP-DVLSDA--C 131
Query: 117 AELTIYLMLGLLRKQNEMRMAIEQKKL--GVPT---GETLLGKTVFILGFGNIGVELAKR 171
           AE+   L+L   R+  E    +         PT   G  L G+ + I G G IG  +A R
Sbjct: 132 AEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATR 191
Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
            R FG+ I    R+  SH          A++ G I         H+ +      +D+ + 
Sbjct: 192 ARGFGLAIHYHNRTRLSH----------ALEEGAI--------YHDTLDSLLGASDIFLI 233
Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
                 +  G ++   ++ + +G++++NI+RG L++ +A+   L   HL   G+DV   E
Sbjct: 234 AAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE 293
Query: 292 P-FDPNDPILKFKNVLITPHVGGVTEHS 318
           P  DP        N+ +TPH+G  T  +
Sbjct: 294 PAIDPR--YRSLDNIFLTPHIGSATHET 319

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 128/291 (43%), Gaps = 40/291 (13%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L  + I+ A ++  I  F +G   VD++AA + GI V   P     N  S AEL I  +L
Sbjct: 65  LTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAP---FSNTRSVAELVIGELL 121
Query: 126 GLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI--- 179
            LLR   E      +    KL   + E   GK + I+G+G+IG +L       G  +   
Sbjct: 122 LLLRGVPEANAKAHRGVWNKLAAGSFEAR-GKKLGIIGYGHIGTQLGILAESLGXYVYFY 180
Query: 180 -IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
            I  K    + +QV   S  L                        + +DVV   +  N  
Sbjct: 181 DIENKLPLGNATQVQHLSDLL------------------------NXSDVVSLHVPENPS 216
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND- 297
           T        +S  K GSLL+N +RG ++D  A+   L   HL G  IDV  TEP   +D 
Sbjct: 217 TKNXXGAKEISLXKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP 276
Query: 298 ---PILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLTGLEF 344
              P+ +F NVL+TPH+GG T+ +  ++  +V G +      G+ L+ + F
Sbjct: 277 FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNF 327

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 121/267 (45%), Gaps = 24/267 (8%)
Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAEL 119
           T+ L    + +   +++I++ G G + +DI +A   GI V  +P    + T ++  C  L
Sbjct: 75  TITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHIL 134
Query: 120 TIYLMLGLLR---KQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 176
            +Y     L    ++     ++EQ +        + G+T+ I+G   +G  +A R + FG
Sbjct: 135 NLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFG 194
Query: 177 VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLN 236
             ++     +  +     + +    +   + DL+    C            V + C  LN
Sbjct: 195 FNVL----FYDPYLSDGIERALGLQRVSTLQDLLFHSDC------------VTLHC-GLN 237
Query: 237 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-P 295
           +    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +DV  +EPF   
Sbjct: 238 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 297
Query: 296 NDPILKFKNVLITPHVGGVTEHSYRSM 322
             P+    N++ TPH    +E +   M
Sbjct: 298 QGPLKDAPNLICTPHAAWYSEQASIEM 324

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 27/251 (10%)
Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 164
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 165 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 223
Query: 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN 244
               H         L +               ED++      DVV     L+ +T  ++N
Sbjct: 224 ----HRLPESVEKELNLT---------WHATREDMYPVC---DVVTLNCPLHPETEHMIN 267
Query: 245 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 304
              L   K+G+ +VN ARG L D +A+A  LE G L G   DV + +P   + P      
Sbjct: 268 DETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 327
Query: 305 VLITPHVGGVT 315
             +TPH+ G T
Sbjct: 328 NGMTPHISGTT 338

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 51/272 (18%)
Query: 73  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
            A  +K +    VG + +D+ A  + GI+++ +P     + A+ AE  +   L LLR   
Sbjct: 65  HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMG 121
Query: 133 EMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189
           +++  ++    +K G   G+ L  +TV ++G G+IG    K  + FG K+IA        
Sbjct: 122 KVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAY------- 174
Query: 190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------KADVVVCCLSLNKQTAGIV 243
                             D    KG H D F++ S      ++DV+   +   +Q   I+
Sbjct: 175 ------------------DPYPMKGDHPD-FDYVSLEDLFKQSDVIDLHVPGIEQNTHII 215
Query: 244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP-------- 295
           N++  + MK G++++N AR  L+D +A+   L+ G L G+GID    E  D         
Sbjct: 216 NEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGS 275
Query: 296 -NDP----ILKFKNVLITPHVGGVTEHSYRSM 322
             DP    +L   NV+++PH+   TE +  +M
Sbjct: 276 FKDPLWDELLGMPNVVLSPHIAYYTETAVHNM 307

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 110/256 (42%), Gaps = 27/256 (10%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L    I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L
Sbjct: 104 LTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMIL 160
Query: 126 GLLRKQNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
            L+R  N +      +K G      V     L    V  +  G IG+ + +RL PF V +
Sbjct: 161 SLVR--NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 218
Query: 180 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
             T R    H         L +               ED++      DVV     L+ +T
Sbjct: 219 HYTDR----HRLPESVEKELNLT---------WHATREDMYPVC---DVVTLNCPLHPET 262
Query: 240 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPI 299
             ++N   L   K+G+ +VN ARG L D +A+A  LE G L G   DV + +P   + P 
Sbjct: 263 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPW 322
Query: 300 LKFKNVLITPHVGGVT 315
                  +TPH+ G T
Sbjct: 323 RTMPYNGMTPHISGTT 338

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 123/275 (44%), Gaps = 46/275 (16%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           +L    +S+  ++KLI    VG + +D++   + GI V  IP     +  S AE T   +
Sbjct: 53  KLTEELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPA---YSPESVAEHTFAXI 109
Query: 125 LGLLRKQNEMRMAIEQKKLGVPTGETLLGK-----TVFILGFGNIGVELAKRLRPFGVKI 179
           L L+++    R+    KKL       +L +     T+ ++G G IG  +A     FG K+
Sbjct: 110 LTLVKRLK--RIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKV 167
Query: 180 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFASKADVVVCCLSLNKQ 238
           +             C      VK    +DL  EKGC +  + E   ++DV+   +   K+
Sbjct: 168 L-------------CYD---VVKR---EDL-KEKGCVYTSLDELLKESDVISLHVPYTKE 207
Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF----- 293
           T   +N+  +S  K G  L+N ARG ++D +A+    + G   GLG+DV   E       
Sbjct: 208 THHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKK 267
Query: 294 -------DPNDPILKF---KNVLITPHVGGVTEHS 318
                  D N  IL+     NV+ITPH+   T+ S
Sbjct: 268 YTEGKATDKNLKILELACKDNVIITPHIAYYTDKS 302

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 27/251 (10%)
Query: 71  ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           I++A  +KL +  G+G + VD+ +A    + VA +      N+ S AE  + ++L L+R 
Sbjct: 108 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEV---TYCNSISVAEHVVMMILSLVR- 163
Query: 131 QNEMRMAIEQKKLG------VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
            N +      +K G      V     L    V  +  G IG+ + +RL PF V +  T R
Sbjct: 164 -NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDR 222
Query: 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN 244
               H         L +               ED++      DVV     L+ +T  ++N
Sbjct: 223 ----HRLPESVEKELNLT---------WHATREDMYPVC---DVVTLNCPLHPETEHMIN 266
Query: 245 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 304
              L   K+G+ +VN ARG L D +A+A  LE G L G   DV + +P   + P      
Sbjct: 267 DETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 326
Query: 305 VLITPHVGGVT 315
             +TPH+ G T
Sbjct: 327 NGMTPHISGTT 337

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 23/254 (9%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L +  I++A ++KL +  G+G + VD+ AA    I VA +      N+ S AE  + ++L
Sbjct: 104 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 160
Query: 126 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           GL+R      +  R         V     + G  V  +  G IG+ + + L PF + +  
Sbjct: 161 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 220
Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
           T R    H         L +               ED++      DVV     L+ +T  
Sbjct: 221 TDR----HRLPEAVEKELNLT---------WHATREDMY---GACDVVTLNCPLHPETEH 264
Query: 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 301
           ++N   L   K+G+ LVN ARG L D +AI   LE G L G   DV + +P   + P   
Sbjct: 265 MINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT 324
Query: 302 FKNVLITPHVGGVT 315
             +  +TPH+ G +
Sbjct: 325 MPHNGMTPHISGTS 338

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 110/254 (43%), Gaps = 23/254 (9%)
Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           L +  I++A ++KL +  G+G + VD+ AA    I VA +      N+ S AE  + ++L
Sbjct: 103 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEV---TYCNSNSVAEHVVMMVL 159
Query: 126 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
           GL+R      +  R         V     + G  V  +  G IG+ + + L PF + +  
Sbjct: 160 GLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHY 219
Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
           T R    H         L +               ED++      DVV     L+ +T  
Sbjct: 220 TDR----HRLPEAVEKELNLT---------WHATREDMY---GACDVVTLNCPLHPETEH 263
Query: 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 301
           ++N   L   K+G+ LVN ARG L D +AI   LE G L G   DV + +P   + P   
Sbjct: 264 MINDETLKLFKRGAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT 323
Query: 302 FKNVLITPHVGGVT 315
             +  +TPH+ G +
Sbjct: 324 MPHNGMTPHISGTS 337

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 31/283 (10%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           R+D++ +    ++++I     G +  D++A T  G+ +  +P  +T      AEL I L 
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 125 LGLLRKQNEMRMAIEQKKL--GVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           +GL R        +   K     P   G  L   TV  LG G IG+ +A RL+ +G  + 
Sbjct: 113 VGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATL- 171
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
                   + +     +    + G+      +  C E    FAS +D ++  L LN  T 
Sbjct: 172 -------QYHEAKALDTQTEQRLGL-----RQVACSE---LFAS-SDFILLALPLNADTL 215
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 296
            +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV     W     P 
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 297 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
             DP +L   N L TPH+G         + +      LQ  AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 122/283 (43%), Gaps = 31/283 (10%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           R+D++ +    ++++I     G +  D++A T  G+ +  +P  +T      AEL I L 
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 125 LGLLRKQNEMRMAIEQKKL--GVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           +GL R        +   K     P   G  L   TV  LG G IG+ +A RL+ +G  + 
Sbjct: 113 VGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATL- 171
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
                   + +     +    + G+      +  C E    FAS +D ++  L LN  T 
Sbjct: 172 -------QYHEAKALDTQTEQRLGL-----RQVACSE---LFAS-SDFILLALPLNADTL 215
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 296
            +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV     W     P 
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 297 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
             DP +L   N L TPH+G         + +      LQ  AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 31/283 (10%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           R+D++ +    ++++I     G +  D++A T  G+ +  +P  +T      AEL I L 
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 125 LGLLRKQNEMRMAIE--QKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           +GL R        +   Q +   P   G  L   TV  LG G IG+ +A RL+ +G    
Sbjct: 113 VGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWG---- 168
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
           AT +  A  +  +     L ++         +  C E    FAS +D ++  L LN  T 
Sbjct: 169 ATLQYHARKALDTQTEQRLGLR---------QVACSE---LFAS-SDFILLALPLNADTL 215
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 296
            +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV     W     P 
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 297 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
             DP +L   N L TPH+G         + +      LQ  AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 31/283 (10%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           R+D++ +    ++++I     G +  D++A T  G+ +  +P  +T      AEL I L 
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 112
Query: 125 LGLLRKQNEMRMAIE--QKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           +GL R        +   Q +   P   G  L   TV  LG G IG+ +A RL+ +G    
Sbjct: 113 VGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWG---- 168
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
           AT +  A  +  +     L ++         +  C E    FAS +D ++  L LN  T 
Sbjct: 169 ATLQYHARKALDTQTEQRLGLR---------QVACSE---LFAS-SDFILLALPLNADTL 215
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 296
            +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV     W     P 
Sbjct: 216 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQ 275
Query: 297 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
             DP +L   N L TPH+G         + +      LQ  AG
Sbjct: 276 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 318

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 31/283 (10%)
Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
           R+D++ +    ++++I     G +  D++A T  G+ +  +P  +T      AEL I L 
Sbjct: 57  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLT---VPTAELAIGLA 113
Query: 125 LGLLRKQNEMRMAIE--QKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           +GL R        +   Q +   P   G  L   TV  LG G IG+  A RL+ +G    
Sbjct: 114 VGLGRHLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWG---- 169
Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
           AT +  A+ +  +     L ++         +  C E    FAS +D ++  L LN  T 
Sbjct: 170 ATLQYHAAKALDTQTEQRLGLR---------QVACSE---LFAS-SDFILLALPLNADTL 216
Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV----AWTEPFDPN 296
            +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV     W     P 
Sbjct: 217 HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQ 276
Query: 297 --DP-ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAG 336
             DP +L   N L TPH+G         + +      LQ  AG
Sbjct: 277 QIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAG 319

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 41/273 (15%)
Query: 65  RLDSNCISRANQMKLIMQFG-VGLEG---VDINAATRCGIKVARIPGDVTGNAASCAELT 120
           R+    + R  ++K+I Q G V  +    +D+ A T  G+ V     +  G+  + AELT
Sbjct: 60  RVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVL----EGKGSPVAPAELT 115
Query: 121 IYLMLGLLRK--------------QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGV 166
             L++   R+              Q+ ++        G+  G  L G+T+ I G+G IG 
Sbjct: 116 WALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGI--GRVLKGQTLGIFGYGKIGQ 173
Query: 167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 226
            +A   R FG+ ++   R    +S+   ++   AV               + +FE   ++
Sbjct: 174 LVAGYGRAFGMNVLVWGRE---NSKERARADGFAVAE-----------SKDALFE---QS 216
Query: 227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID 286
           DV+   L LN +T  I+  + L+ MK  +L VN +R  L++   +   L  G  G   ID
Sbjct: 217 DVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAID 276
Query: 287 VAWTEPFDPNDPILKFKNVLITPHVGGVTEHSY 319
           V  TEP      +L+ +N + TPH+G V   SY
Sbjct: 277 VFETEPILQGHTLLRMENCICTPHIGYVERESY 309

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 114/285 (40%), Gaps = 48/285 (16%)
Query: 66  LDSNCISRANQMKLIMQFGV--------GLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L  NC +    + +  + GV        G + +D   A   G  +A +P     +  + A
Sbjct: 51  LRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVP---RYSPNAIA 107
Query: 118 ELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---GETLLGKTVFILGFGNIGVELAKRLRP 174
           EL +   + LLR          +K   V      + +   TV ++G G IG   A+    
Sbjct: 108 ELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHG 167
Query: 175 FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 234
            G  +I          +  C   +L                     E   K+D++     
Sbjct: 168 MGATVIGEDVFEIKGIEDYCTQVSLD--------------------EVLEKSDIITIHAP 207
Query: 235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP-- 292
             K+   +V + FL  MK G++LVN ARG L+D EA+   +E G LGG G DV   E   
Sbjct: 208 YIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASV 267
Query: 293 FDPN-------DPILK-----FKNVLITPHVGGVTEHSYRSMAKV 325
           F  +       +P+ +     +  VLITPH+G  T+ + ++M +V
Sbjct: 268 FGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEV 312

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 101/245 (41%), Gaps = 23/245 (9%)
Query: 75  NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
           NQ+K +     G++ + + A    G+ VA   G    +A + +E  +  ML ++R  +  
Sbjct: 60  NQLKFVQVISAGVDYLPLKALQAAGVVVANTSGI---HADAISESVLAAMLSVVRGYHAA 116
Query: 135 RMAIE-QKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
            +     ++  +P T  TL G+ + I G G IG  LA +    G+ +I    +       
Sbjct: 117 WLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTT------- 169
Query: 193 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 252
                      G   D   E        +  + A+ +V  L L   T  + +       K
Sbjct: 170 -----------GHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTK 218
Query: 253 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 312
           +  +L+NI RG  +D  A+   L+   L    +DV   EP   + P+ +  +VLITPH+ 
Sbjct: 219 QQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHIS 278
Query: 313 GVTEH 317
           G   H
Sbjct: 279 GQIAH 283

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 29/272 (10%)
Query: 76  QMKLIMQFGVGLEGV--DINAATR---CGIKVARIPGDVTGNAASCAELTIYLMLGLLRK 130
           ++K +   G G++ +   +NA        I + R+  + TG      E  +  +L   R+
Sbjct: 59  RLKAVFVLGAGVDAILSKLNAHPEXLDASIPLFRL--EDTGXGLQXQEYAVSQVLHWFRR 116
Query: 131 QNEMRMAIEQKKLGVPTGE-TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189
            ++ + A++ + L  P  E T    +V I G G +G ++A+ L+ +G  +    R W S 
Sbjct: 117 FDDYQ-ALKNQALWKPLPEYTREEFSVGIXGAGVLGAKVAESLQAWGFPL----RCW-SR 170
Query: 190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS 249
           S+ S                V+     E++  F ++  V++  L    QT GI+N   L 
Sbjct: 171 SRKSWPG-------------VESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLD 217
Query: 250 SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITP 309
            +  G+ ++N+ARG  +    +   L+ G L G  +DV   EP     P+ +   V  TP
Sbjct: 218 QLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWRHPRVAXTP 277
Query: 310 HVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG 341
           H+  VT  +       +     QL  G P+TG
Sbjct: 278 HIAAVTRPA--EAIDYISRTITQLEKGEPVTG 307

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 33/259 (12%)
Query: 57  HLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCG-----IKVARIPGDVTG 111
           H+ + +  R     +++AN++     F     GVD+    RC        V  I G +  
Sbjct: 49  HILMAEPARAKP-LLAKANKLSW---FQSTYAGVDVLLDARCRRDYQLTNVRGIFGPLMS 104
Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171
                  L++   L L R+Q + R+       G      L G+T+ ILG G+IG  +A  
Sbjct: 105 EYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQG------LKGRTLLILGTGSIGQHIAHT 158
Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
            + FG+K++   RS    +    Q   L   N ++                 ++ADV+V 
Sbjct: 159 GKHFGMKVLGVSRSGRERAGFD-QVYQLPALNKML-----------------AQADVIVS 200
Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
            L   ++T  +   S     K G++L N+ RG  ++   +   L  G LG   +DV   E
Sbjct: 201 VLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 260
Query: 292 PFDPNDPILKFKNVLITPH 310
           P   + P+    N++ITPH
Sbjct: 261 PLPADSPLWGQPNLIITPH 279

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 40/258 (15%)
Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK-KL 143
           VG   ++ +   +  + V  +P     +  + AE+T+   + LLRK  E R  ++     
Sbjct: 79  VGFNTINFDWTKKYNLLVTNVP---VYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDF 135
Query: 144 GVPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA 200
             P+      +   TV ++G G+IG  +A+     G K+IA   ++    +         
Sbjct: 136 TWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFL------ 189
Query: 201 VKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 260
                          + D      +AD+V     L   T  ++ +  L  MKK + L+N 
Sbjct: 190 --------------TYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINC 235
Query: 261 ARGGLLDYEAIAHYLECGHLGGLGID-----------VAWTEPFDPND--PILKFKNVLI 307
           ARG L+D  A+   L+ G + G G+D              T+   P D   + K  NV+I
Sbjct: 236 ARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVI 295
Query: 308 TPHVGGVTEHSYRSMAKV 325
           TPH    TE S R+M ++
Sbjct: 296 TPHSAFYTETSIRNMVQI 313

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 123/267 (46%), Gaps = 40/267 (14%)
Query: 75  NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
           + +K+    G G + +D++A    G+  A   G   G+ A+ ++L +YL+L + R  +  
Sbjct: 79  SSLKVFAAAGAGFDWLDLDALNERGVAFANSRG--AGDTAT-SDLALYLILSVFRLASYS 135
Query: 135 RMAIEQKKLGVP------------TGETLLGKTVFILGFGNIGVELAKR-LRPFGVKIIA 181
             A    + G P            +     G  +  +G G I  E+A++ +   G+K++ 
Sbjct: 136 ERA---ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVY 192
Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
              + A     +    AL  +   +D L           E A ++D V   +   K T  
Sbjct: 193 YDVAPAD----AETEKALGAER--VDSLE----------ELARRSDCVSVSVPYMKLTHH 236
Query: 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPN--DPI 299
           +++++F ++MK GS +VN ARG ++  +A+   L+ G L   G+DV     F+PN    +
Sbjct: 237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDV---HEFEPNVSKEL 293
Query: 300 LKFKNVLITPHVGGVTEHSYRSMAKVV 326
           ++ K+V +T H+GGV   ++    ++ 
Sbjct: 294 IEMKHVTLTTHIGGVAIETFHEFERLT 320

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 110/253 (43%), Gaps = 37/253 (14%)
Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM--RMAIEQKK 142
           VG++ +D++ A   G ++  +P     +  + AE        +LR+   M  +MA    +
Sbjct: 79  VGVDNIDMDKAKELGFQITNVP---VYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLR 135
Query: 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 202
                G  +  + V ++G G+IG    + +  FG K+IA             ++  L  K
Sbjct: 136 WAPTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYD---------IFKNPELEKK 186
Query: 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262
              +D L       +D+++   +ADV+   +        ++N   ++ MK G ++VN +R
Sbjct: 187 GYYVDSL-------DDLYK---QADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSR 236
Query: 263 GGLLDYEAIAHYLECGHLGGLGIDV----------AWTEPFDPND---PILKFKNVLITP 309
           G L+D +A+   L+ G + G  +D            W     P+     ++   NVL+TP
Sbjct: 237 GRLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTP 296
Query: 310 HVGGVTEHSYRSM 322
           H    T H+ R+M
Sbjct: 297 HTAFYTTHAVRNM 309

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 36/265 (13%)
Query: 75  NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
           + +K+    G G + +D++A    G+  A   G   G+ A+ ++L +YL+L + R  +  
Sbjct: 79  SSLKVFAAAGAGFDWLDLDALNERGVAFANSRG--AGDTAT-SDLALYLILSVFRLASYS 135
Query: 135 RMAIEQKKLGVP------------TGETLLGKTVFILGFGNIGVELAKR-LRPFGVKIIA 181
             A    + G P            +     G  +  +G G I  E+A++ +   G+K++ 
Sbjct: 136 ERA---ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVY 192
Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
              + A     +    AL  +   +D L           E A ++D V   +   K T  
Sbjct: 193 YDVAPAD----AETEKALGAER--VDSLE----------ELARRSDCVSVSVPYMKLTHH 236
Query: 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 301
           +++++F ++MK GS +VN ARG ++  +A+   L+ G L   G+DV   EP   +  +++
Sbjct: 237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIE 295
Query: 302 FKNVLITPHVGGVTEHSYRSMAKVV 326
            K+V +T H+GGV   ++    ++ 
Sbjct: 296 MKHVTLTTHIGGVAIETFHEFERLT 320

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 122/265 (46%), Gaps = 36/265 (13%)
Query: 75  NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
           + +K+    G G + +D++A    G+  A   G   G+ A+ ++L +YL+L + R  +  
Sbjct: 79  SSLKVFAAAGAGFDWLDLDALNERGVAFANSRG--AGDTAT-SDLALYLILSVFRLASYS 135
Query: 135 RMAIEQKKLGVP------------TGETLLGKTVFILGFGNIGVELAKR-LRPFGVKIIA 181
             A    + G P            +     G  +  +G G I  E+A++ +   G+K++ 
Sbjct: 136 ERA---ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVY 192
Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
              + A     +    AL  +   +D L           E A ++D V   +   K T  
Sbjct: 193 YDVAPAD----AETEKALGAER--VDSLE----------ELARRSDCVSVSVPYMKLTHH 236
Query: 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK 301
           +++++F ++MK GS +VN ARG ++  +A+   L+ G L   G+DV   EP   +  +++
Sbjct: 237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIE 295
Query: 302 FKNVLITPHVGGVTEHSYRSMAKVV 326
            K+V +T H+GGV   ++    ++ 
Sbjct: 296 MKHVTLTTHIGGVAIETFHEFERLT 320

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 119/274 (43%), Gaps = 41/274 (14%)
Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL- 143
           VG++ +D+  A   G ++  +P     +  + AE        +LR+   M   + +  L 
Sbjct: 79  VGVDNIDMAKAKELGFQITNVP---VYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR 135
Query: 144 GVPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 202
             PT G  +  + V ++G G+IG    + +  FG K+I              ++  L  K
Sbjct: 136 WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD---------IFRNPELEKK 186
Query: 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262
              +D L       +D+++   +ADV+   +        ++N   ++ MK+  ++VN++R
Sbjct: 187 GYYVDSL-------DDLYK---QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 263 GGLLDYEAIAHYLECGHLGGLGIDV----------AWTEPFDPN---DPILKFKNVLITP 309
           G L+D +A+   L+ G + G  +DV           W     P+     ++   NVL+TP
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTP 296
Query: 310 HVGGVTEHSYRSMAKVVGDVALQL----HAGTPL 339
           H    T H+ R+M     D  L+L     A TP+
Sbjct: 297 HTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 41/274 (14%)
Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL- 143
           VG++ +D+  A   G ++  +P     +  + AE        +LR+   M   + +  L 
Sbjct: 79  VGVDNIDMAKAKELGFQITNVP---VYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR 135
Query: 144 GVPT-GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK 202
             PT G  +  + V ++G G+IG    + +  FG K+I              ++  L  K
Sbjct: 136 WAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD---------IFRNPELEKK 186
Query: 203 NGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 262
              +D L       +D+++   +ADV+   +        ++N   ++ MK+  ++VN++R
Sbjct: 187 GYYVDSL-------DDLYK---QADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 263 GGLLDYEAIAHYLECGHLGGLGIDV----------AWTEPFDPN---DPILKFKNVLITP 309
           G L+D +A+   L+ G + G  +DV           W     P+     ++   NVL+TP
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTP 296
Query: 310 HVGGVTEHSYRSMAKVVGDVALQL----HAGTPL 339
                T H+ R+M     D  L+L     A TP+
Sbjct: 297 KTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 28/225 (12%)
Query: 113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKL-----GVPTGETLLGKTVFILGFGNIGVE 167
           A   AE+ +   L L R   +  +A ++        G  +   + G  + I+GFG++G  
Sbjct: 131 AEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKA 190
Query: 168 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227
           L + L  F  +I      W   S +         +NG+      E    ED+    +K+D
Sbjct: 191 LRRVLSGFRARIRVFD-PWLPRSXLE--------ENGV------EPASLEDVL---TKSD 232
Query: 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287
            +    ++  +    +     SS ++G+  + ++R  ++D++A+   +  GH+     DV
Sbjct: 233 FIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DV 291
Query: 288 AWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQ 332
              EP   + P+   K  + + H  G  + ++    K  GD  L+
Sbjct: 292 YPEEPLPLDHPVRSLKGFIRSAHRAGALDSAF----KKXGDXVLE 332

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 224 SKADVVVCCLSLNKQ----TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 279
           ++ADV+     LN+     T  ++++  L++++ G+ LVN +RG ++D +A+   LE G 
Sbjct: 166 AEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGA 225
Query: 280 LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT-EHSYRSMAKV 325
              + +DV   EP    DP L  + ++ TPH+ G + E   R  A++
Sbjct: 226 DLEVALDVWEGEP--QADPELAARCLIATPHIAGYSLEGKLRGTAQI 270

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 23/162 (14%)
Query: 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE 212
           G+ V +LG G IG  + K L   G ++    R+         +       N + + L   
Sbjct: 124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT--------PKEGPWRFTNSLEEAL--- 172
Query: 213 KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIA 272
                       +A   VC L LNK T G+V    L+   + ++ VN+ R  +LD + + 
Sbjct: 173 -----------REARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVL 221
Query: 273 HYLECGHLGGLGIDVAW-TEPFDPNDPILKFKNVLITPHVGG 313
             L+         DV W    F  +       NV+ TP V G
Sbjct: 222 RILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 263

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID 207
           G +L  +T+ I+G GN+G  L  RL   G++ +      A+                   
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG----------------- 156
Query: 208 DLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKSFLSSMKKGSLLVNIARG 263
               ++G    + E   +ADV+     L K    +T  + +++ +  +K G++L+N  RG
Sbjct: 157 ----DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG 212
Query: 264 GLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVT 315
            ++D  A+   L  G    + +DV   EP D N  +L+  ++  T H+ G T
Sbjct: 213 PVVDNAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVDI-GTSHIAGYT 262

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 114/269 (42%), Gaps = 57/269 (21%)
Query: 76  QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT--GNAA----SCAELTIYLMLGLLR 129
           + K I     G++ +D+N           IP +V    NA     S AE    L+L   +
Sbjct: 49  RTKXIQAISAGVDHIDVNG----------IPENVVLCSNAGAYSISVAEHAFALLLAHAK 98
Query: 130 KQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
              E     E  K G+    PT   L GK + ILG+G IG  +A   + FG ++IA  RS
Sbjct: 99  NILENN---ELXKAGIFRQSPT-TLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRS 154
Query: 186 WASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNK 245
                         +V   +  D++ E     D+F    ++D V+  + L  +T G VN 
Sbjct: 155 --------------SVDQNV--DVISESPA--DLFR---QSDFVLIAIPLTDKTRGXVNS 193
Query: 246 SFLSSMKKGSLLVNIARGGLLDY-EAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 304
             L++ +K   +VN+AR  ++   + I    E   +  L  DV W EP          +N
Sbjct: 194 RLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLS-DVWWNEPEITE---TNLRN 249
Query: 305 VLITPHVGGVTEHSYRSMAKVVGDVALQL 333
            +++PHV G         +  + D+A+QL
Sbjct: 250 AILSPHVAG-------GXSGEIXDIAIQL 271

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	346
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-64
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	1e-60
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	5e-60
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	7e-59
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	8e-59
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	4e-55
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	6e-55
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	9e-55
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	1e-54
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	6e-54
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-53
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	4e-53
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	8e-53
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	8e-53
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	2e-52
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	2e-52
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	3e-52
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	9e-52
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-51
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	1e-51
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	5e-51
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	8e-51
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	2e-50
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	5e-50
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	7e-50
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-49
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	6e-49
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	1e-48
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	2e-48
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	3e-48
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	5e-43
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	7e-42
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	5e-19
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	8e-08
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	2e-05
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	3e-05
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	5e-05
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	1e-04
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	2e-04
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	3e-04
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	4e-04
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	5e-04
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	5e-04
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	5e-04
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	8e-04
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	9e-04

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  205 bits (525), Expect = 2e-64
 Identities = 67/330 (20%), Positives = 119/330 (36%), Gaps = 28/330 (8%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCIS 72
           + VL      P      +    ++       V  +D   +             L +    
Sbjct: 2   SLVLMAQATKPEQLQQLQTTYPDWTFKDAAAVTAADYDQIEV----MYGNHPLLKTILAR 57

Query: 73  RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132
             NQ+K +     G++ + + A    G+ VA   G    +A + +E  +  ML ++R  +
Sbjct: 58  PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSG---IHADAISESVLAAMLSVVRGYH 114

Query: 133 EMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 190
              +     +      T  TL G+ + I G G IG  LA +    G+ +I    +     
Sbjct: 115 AAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTT----- 169

Query: 191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 250
                        G   D   E        +  + A+ +V  L L   T  + +      
Sbjct: 170 -------------GHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQ 216

Query: 251 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH 310
            K+  +L+NI RG  +D  A+   L+   L    +DV   EP   + P+ +  +VLITPH
Sbjct: 217 TKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPH 276

Query: 311 VGGVTEHSYRSMAKVVGD-VALQLHAGTPL 339
           + G   H   ++  +     A  +  GT +
Sbjct: 277 ISGQIAHFRATVFPIFAANFAQFVKDGTLV 306

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  195 bits (499), Expect = 1e-60
 Identities = 62/297 (20%), Positives = 112/297 (37%), Gaps = 37/297 (12%)

Query: 42  DVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIK 101
            +V   D+ +V A          R+ +  +++  ++K I     GL+ +   +     + 
Sbjct: 22  KIVRGGDLGNVEA------ALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVT 74

Query: 102 VARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFIL 159
           VA   G    NA + AE  + L+L   ++  +    +++      V     + G+ V +L
Sbjct: 75  VAGNAG---SNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPL-IQGEKVAVL 130

Query: 160 GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI 219
           G G IG  + K L   G ++    R+          S         +++           
Sbjct: 131 GLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNS---------LEEA---------- 171

Query: 220 FEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 279
                +A   VC L LNK T G+V    L+ M + ++ VN+ R  +LD + +   L+   
Sbjct: 172 ---LREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERP 228

Query: 280 LGGLGIDVAW-TEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHA 335
                 DV W    F  +       NV+ TP V G    + R   ++V +    L  
Sbjct: 229 QFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGY-GNERVWRQMVMEAVRNLIT 284

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  195 bits (498), Expect = 5e-60
 Identities = 82/302 (27%), Positives = 131/302 (43%), Gaps = 35/302 (11%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
            Q  V    + PD      I + H+ +        + +  I +A  +KL++  G+G + +
Sbjct: 41  HQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHI 100

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 146
           D+ AA   G+ VA + G    N  S AE  +  +L L+R        + +          
Sbjct: 101 DLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAY 157

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 206
               L GKT+  +G G IG  L +RL+PFG  ++   R   +                  
Sbjct: 158 RAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA------------------ 199

Query: 207 DDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264
            +L  E G    ED+ E   K DV+V  + L ++T G+ NK  +  +KKG L+VN ARG 
Sbjct: 200 PELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGA 259

Query: 265 LLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAK 324
           +++ +A+   +E GH+GG   DV   +P   + P     N  +TPH  G T  +    A 
Sbjct: 260 IMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAA 319

Query: 325 VV 326
             
Sbjct: 320 GT 321

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  194 bits (494), Expect = 7e-59
 Identities = 71/302 (23%), Positives = 116/302 (38%), Gaps = 35/302 (11%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
             + V    D PD      + +  + + +      L    I++A  +KL +  G+G + V
Sbjct: 68  HTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHV 127

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 146
           D+ +A    + VA +      N+ S AE  + ++L L+R          +        V 
Sbjct: 128 DLQSAIDRNVTVAEVTY---CNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS 184

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 206
               L    V  +  G IG+ + +RL PF V +  T R                      
Sbjct: 185 HAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP------------------ 226

Query: 207 DDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264
           + +  E     H    +     DVV     L+ +T  ++N   L   K+G+ +VN ARG 
Sbjct: 227 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 286

Query: 265 LLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAK 324
           L D +A+A  LE G L G   DV + +P   + P        +TPH+ G T  +    A 
Sbjct: 287 LCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAA 346

Query: 325 VV 326
             
Sbjct: 347 GT 348

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  192 bits (490), Expect = 8e-59
 Identities = 79/328 (24%), Positives = 135/328 (41%), Gaps = 44/328 (13%)

Query: 33  LQNYPSIQVDVVPISDVPDV---IANYH-LCVV--KTMRLDSNCISRANQMKLIMQFGV- 85
           L     ++V    +  V  +   +A+   L ++  +T R+    + R  ++K+I Q G  
Sbjct: 23  LLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERT-RVTRQLLDRLPKLKIISQTGRV 81

Query: 86  ---GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMR--- 135
                  +D+ A T  G+ V    G    +  + AELT  L++   R+       ++   
Sbjct: 82  SRDAGGHIDLEACTDKGVVVLEGKG----SPVAPAELTWALVMAAQRRIPQYVASLKHGA 137

Query: 136 -----MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 190
                +           G  L G+T+ I G+G IG  +A   R FG+ ++     W    
Sbjct: 138 WQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLV----WGRE- 192

Query: 191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 250
                S   A  +G    + + K   + +FE   ++DV+   L LN +T  I+  + L+ 
Sbjct: 193 ----NSKERARADGF--AVAESK---DALFE---QSDVLSVHLRLNDETRSIITVADLTR 240

Query: 251 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH 310
           MK  +L VN +R  L++   +   L  G  G   IDV  TEP      +L+ +N + TPH
Sbjct: 241 MKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPH 300

Query: 311 VGGVTEHSYRSMAKVVGDVALQLHAGTP 338
           +G V   SY     +     L +  G  
Sbjct: 301 IGYVERESYEMYFGIAFQNILDILQGNV 328

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  183 bits (466), Expect = 4e-55
 Identities = 77/307 (25%), Positives = 123/307 (40%), Gaps = 37/307 (12%)

Query: 39  IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 90
            ++      +  +      I +  + +        +    I +A ++KL++  GVG + +
Sbjct: 39  HELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHI 98

Query: 91  DINAATRCG--IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLG 144
           D++   + G  I V  + G    N  S AE  +  ML L+R        I          
Sbjct: 99  DLDYINQTGKKISVLEVTG---SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAI 155

Query: 145 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG 204
                 + GKT+  +G G IG  + +RL PF  K +        +            K G
Sbjct: 156 AKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELL-------YYDYQALPKDAEEKVG 208

Query: 205 IIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 264
                   +   E+I E  ++AD+V     L+  T G++NK  LS  KKG+ LVN ARG 
Sbjct: 209 A------RR--VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGA 260

Query: 265 LLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL-----ITPHVGGVTEHSY 319
           +   E +A  LE G L G G DV + +P   + P    +N       +TPH  G T  + 
Sbjct: 261 ICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQ 320

Query: 320 RSMAKVV 326
              A+  
Sbjct: 321 TRYAQGT 327

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  182 bits (464), Expect = 6e-55
 Identities = 70/323 (21%), Positives = 133/323 (41%), Gaps = 36/323 (11%)

Query: 40  QVDVVPISDVPD----VIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINA 94
            V         +    V+       +  T+ L    + +   +++I++ G G + +DI +
Sbjct: 44  TVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKS 103

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMAIEQKKLGV 145
           A   GI V  +P     +    A+ T+  +L L R         ++     ++EQ +   
Sbjct: 104 AGDLGIAVCNVPA---ASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVA 160

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI 205
                + G+T+ I+G G +G  +A R + FG  ++               S  +    G+
Sbjct: 161 SGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY---------LSDGVERALGL 211

Query: 206 IDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 265
               V        + +    +D V     LN+    ++N   +  M++G+ LVN ARGGL
Sbjct: 212 --QRV------STLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 263

Query: 266 LDYEAIAHYLECGHLGGLGIDVAWTEPFDPND-PILKFKNVLITPHVGGVTEHSYRSMA- 323
           +D +A+A  L+ G + G  +DV  +EPF  +  P+    N++ TPH    +E +   M  
Sbjct: 264 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMRE 323

Query: 324 KVVGDVALQLHAGTPLTGLEFVN 346
           +   ++   +    P +    VN
Sbjct: 324 EAAREIRRAITGRIPDSLKNCVN 346

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  180 bits (459), Expect = 9e-55
 Identities = 85/322 (26%), Positives = 149/322 (46%), Gaps = 38/322 (11%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 69
           +VL   P          + L++   ++V      D   + +++ +    +V++  ++   
Sbjct: 5   KVLVAAPLHEK----AIQVLKD-AGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRR 59

Query: 70  CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 129
            I  A ++K+I + GVGL+ +D+ AA   GI+V   P     ++ S AEL + LM  + R
Sbjct: 60  VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLMFSVAR 116

Query: 130 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184
           K       +      +K+     G  L GKT+ I+GFG IG ++AK     G+ I+    
Sbjct: 117 KIAFADRKMREGVWAKKEA---MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDP 173

Query: 185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN 244
                      +   A +       VD     E + +   ++DVV   + L + T  ++N
Sbjct: 174 Y---------PNEERAKEVNG--KFVD----LETLLK---ESDVVTIHVPLVESTYHLIN 215

Query: 245 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 304
           +  L  MKK ++L+N +RG ++D  A+   L+ G + G G+DV   EP   + P+ KF N
Sbjct: 216 EERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDN 275

Query: 305 VLITPHVGGVTEHSYRSMAKVV 326
           V++TPH+G  T  +       V
Sbjct: 276 VVLTPHIGASTVEAQERAGVEV 297

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  180 bits (458), Expect = 1e-54
 Identities = 60/302 (19%), Positives = 111/302 (36%), Gaps = 36/302 (11%)

Query: 36  YPSIQVDVVPISDVPDVIANYHLCVVKTM-----RLDSNCISRANQMKLIMQFGVGLEGV 90
           Y +   D         V+  + L           ++  +      + K+I     G++ +
Sbjct: 4   YVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGVDHI 63

Query: 91  DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET 150
           D+N      +  +         + S AE    L+L   +   E    ++           
Sbjct: 64  DVNGIPENVVLCSNAGA----YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSPTTL 119

Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV 210
           L GK + ILG+G IG  +A   + FG+++IA  RS             + V +    DL 
Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQ--------NVDVISESPADLF 171

Query: 211 DEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEA 270
                         ++D V+  + L  +T G+VN   L++ +K   +VN+AR  ++    
Sbjct: 172 -------------RQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPD 218

Query: 271 IAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVA 330
           +  +L+         DV W EP          +N +++PHV G        +A     +A
Sbjct: 219 MIGFLKERSDVWYLSDVWWNEPEITETN---LRNAILSPHVAGGMSGEIMDIA---IQLA 272

Query: 331 LQ 332
            +
Sbjct: 273 FE 274

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  179 bits (456), Expect = 6e-54
 Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 32/288 (11%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
             +     L  + + R+D      A +++++  + VG + +DI  AT+ GI V   P  +
Sbjct: 41  KKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVL 100

Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---------GETLLGKTVFILG 160
           T    + A+L   L+L   R   +    +   +              G  + GKT+ I+G
Sbjct: 101 T---DATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIG 157

Query: 161 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF 220
            G IG  +AKR + F ++I+   R+         +   +  +              + + 
Sbjct: 158 LGRIGQAIAKRAKGFNMRILYYSRT---------RKEEVERELNAE---------FKPLE 199

Query: 221 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 280
           +   ++D VV  + L ++T  ++N+  L  MKK ++L+NIARG ++D  A+   L+ G +
Sbjct: 200 DLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWI 259

Query: 281 GGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 328
            G G+DV   EP   N+ + K  NV++TPH+G  +  +   MA++V  
Sbjct: 260 AGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGSASFGAREGMAELVAK 306

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  177 bits (452), Expect = 1e-53
 Identities = 85/284 (29%), Positives = 134/284 (47%), Gaps = 33/284 (11%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
             +     L      R+D+  + RA  +K+I  + VG++ VD+ AA   GI+V   PG +
Sbjct: 39  KRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVL 98

Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGNI 164
           T    + A+LT+ L+L + R+  E              P    G  L G T+ ++G G I
Sbjct: 99  T---EATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRI 155

Query: 165 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 224
           G  +AKR   FG++++   R+             L      +++L+ E            
Sbjct: 156 GQAVAKRALAFGMRVVYHART----------PKPLPYPFLSLEELLKE------------ 193

Query: 225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG 284
            ADVV     L  +T  ++N+  L +MK+G++L+N ARG L+D EA+   L  GHL G G
Sbjct: 194 -ADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAG 251

Query: 285 IDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 328
           +DV   EP  P  P+    N +ITPH+G     +   MA+V  +
Sbjct: 252 LDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  175 bits (447), Expect = 8e-53
 Identities = 81/334 (24%), Positives = 147/334 (44%), Gaps = 43/334 (12%)

Query: 10  KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVKTM-R 65
               + L   P          + L+    IQVD    +   ++ ++I NY + VV++  +
Sbjct: 3   IYTVKALITDP----IDEILIKTLRE-KGIQVDYMPEISKEELLNIIGNYDIIVVRSRTK 57

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           +  + I +  ++K+I + G+GL+ +D   A +  IKV   PG    +  S  ELTI LM+
Sbjct: 58  VTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPG---ASTDSAVELTIGLMI 114

Query: 126 GLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181
              RK        +  I +K  G+   E L GKT+ I+GFG IG ++       G+K++A
Sbjct: 115 AAARKMYTSMALAKSGIFKKIEGL---E-LAGKTIGIVGFGRIGTKVGIIANAMGMKVLA 170

Query: 182 TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 241
                             A K       V      E++      +DV+   ++++K    
Sbjct: 171 YDIL---------DIREKAEKINA--KAVS----LEELL---KNSDVISLHVTVSKDAKP 212

Query: 242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP--FDPNDPI 299
           I++      MK   ++VN +R   ++ +A+  Y++ G +     DV W EP   +    +
Sbjct: 213 IIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELEL 272

Query: 300 LKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL 333
           LK + V++T H+G  T+ + + +A+        L
Sbjct: 273 LKHERVIVTTHIGAQTKEAQKRVAE---MTTQNL 303

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  175 bits (447), Expect = 8e-53
 Identities = 79/285 (27%), Positives = 121/285 (42%), Gaps = 27/285 (9%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGD 108
           +   +   L +    +     I R    +K I  + +G + +D++A    GIKV   P  
Sbjct: 40  ETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHG 99

Query: 109 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGN 163
           VT    + AE+ + L+LG  R+  E    I  +      P    GE L  KT+ I GFG+
Sbjct: 100 VT---VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGS 156

Query: 164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA 223
           IG  LAKR + F + I       AS S    ++S  A  +  +D L+             
Sbjct: 157 IGQALAKRAQGFDMDIDYFDTHRASSSD---EASYQATFHDSLDSLL------------- 200

Query: 224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 283
           S +           +T    NK+ + S+ +G+++VN ARG L+D E +   LE G L   
Sbjct: 201 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA 260

Query: 284 GIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 328
           G DV   EP + N+      N  + PH+G     +   MA    D
Sbjct: 261 GFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQAND 304

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  175 bits (447), Expect = 2e-52
 Identities = 65/308 (21%), Positives = 129/308 (41%), Gaps = 36/308 (11%)

Query: 46  ISDVPDVIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVAR 104
             D   +I        ++   +++ IS   + +K+    G G + +D++A    G+  A 
Sbjct: 49  YGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFAN 108

Query: 105 IPGDVTGNAASCAELTIYLMLGLLRKQNE-MRMAIEQK--------KLGVPTGETLLGKT 155
             G       + ++L +YL+L + R  +   R A                 +     G  
Sbjct: 109 SRGAGD---TATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHV 165

Query: 156 VFILGFGNIGVELAKR-LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 214
           +  +G G I  E+A++ +   G+K++    + A                    +     G
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD------------------AETEKALG 207

Query: 215 C--HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIA 272
               + + E A ++D V   +   K T  +++++F ++MK GS +VN ARG ++  +A+ 
Sbjct: 208 AERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALI 267

Query: 273 HYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD-VAL 331
             L+ G L   G+DV   EP   +  +++ K+V +T H+GGV   ++    ++    +  
Sbjct: 268 AALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDR 326

Query: 332 QLHAGTPL 339
            L  G PL
Sbjct: 327 FLLQGKPL 334

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  175 bits (445), Expect = 2e-52
 Identities = 78/312 (25%), Positives = 136/312 (43%), Gaps = 35/312 (11%)

Query: 31  EYLQNYPSIQVDVVPISDVP-------DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIM 81
             L      +V+    SD P         +A  H L  + +  +D   +  A   +K+I 
Sbjct: 23  VALARAADCEVEQWD-SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIS 81

Query: 82  QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 141
              VG++ + ++   + GI+V   P  +T    + AEL + L+L   R+  E    ++  
Sbjct: 82  TMSVGIDHLALDEIKKRGIRVGYTPDVLT---DTTAELAVSLLLTTCRRLPEAIEEVKNG 138

Query: 142 KLG--VPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS 196
                 P    G  L   TV I+G G IG  +A+RL+PFGV+       +        ++
Sbjct: 139 GWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFL----YTGRQPRPEEA 194

Query: 197 SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSL 256
           +    +                  E A+++D +V   SL   T G+ NK F   MK+ ++
Sbjct: 195 AEFQAE-------------FVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAV 241

Query: 257 LVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTE 316
            +NI+RG +++ + +   L  G +   G+DV   EP   N P+L  KN +I PH+G  T 
Sbjct: 242 FINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATH 301

Query: 317 HSYRSMAKVVGD 328
            +  +M+ +  +
Sbjct: 302 RTRNTMSLLAAN 313

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  175 bits (445), Expect = 3e-52
 Identities = 89/342 (26%), Positives = 160/342 (46%), Gaps = 39/342 (11%)

Query: 10  KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVKTM-R 65
            N+ +VL             ++ LQ+   +QV         ++   + +    +V++  +
Sbjct: 24  ANLRKVLISDS----LDPCCRKILQD-GGLQVVEKQNLSKEELIAELQDCEGLIVRSATK 78

Query: 66  LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125
           + ++ I+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S AELT  +++
Sbjct: 79  VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAAELTCGMIM 135

Query: 126 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
            L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R++ FG+K I
Sbjct: 136 CLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRMQSFGMKTI 192

Query: 181 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 240
                          S  ++   G+    +      E+I+      D +     L   T 
Sbjct: 193 GYDPI---------ISPEVSASFGV--QQLP----LEEIW---PLCDFITVHTPLLPSTT 234

Query: 241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 300
           G++N +  +  KKG  +VN ARGG++D  A+   L+ G   G  +DV   EP   +  ++
Sbjct: 235 GLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALV 293

Query: 301 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342
             +NV+  PH+G  T+ +     + +    + +  G  LTG+
Sbjct: 294 DHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGV 335

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  173 bits (442), Expect = 9e-52
 Identities = 74/281 (26%), Positives = 119/281 (42%), Gaps = 29/281 (10%)

Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
              L +  + +   + +I   GVG + VD+  A R  I V   PG +       A+L I 
Sbjct: 80  GAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLA---DDVADLGIA 136

Query: 123 LMLGLLRKQNE----MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 178
           LML +LR+  +    +R         +P G +  GK + +LG G IG  LA R   FG+ 
Sbjct: 137 LMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMS 196

Query: 179 IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 238
           +    RS  S                       +   H+   + A  +DV+  C++ +  
Sbjct: 197 VRYWNRSTLSGV---------------------DWIAHQSPVDLARDSDVLAVCVAASAA 235

Query: 239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDP 298
           T  IV+ S L ++    ++VN+ARG ++D +A+   L+ G + G G+DV   EP      
Sbjct: 236 TQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEP-AIRSE 294

Query: 299 ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 339
                N ++ PH G  T  +  +M K+V        AG   
Sbjct: 295 FHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKA 335

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  173 bits (441), Expect = 1e-51
 Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 28/277 (10%)

Query: 58  LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 116
           L V  T  + +  I +    +K I    VG + +D+ AA   GIKV   P  ++    +C
Sbjct: 75  LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLS---DAC 131

Query: 117 AELTIYLMLGLLRKQNEMRMAIEQK--KLGVPT---GETLLGKTVFILGFGNIGVELAKR 171
           AE+ + L+L   R+  E    +         PT   G  L G+ + I G G IG  +A R
Sbjct: 132 AEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATR 191

Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
            R FG+ I    R+     ++S      A+              H+ +      +D+ + 
Sbjct: 192 ARGFGLAIHYHNRT-----RLSHALEEGAIY-------------HDTLDSLLGASDIFLI 233

Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
                 +  G ++   ++ + +G++++NI+RG L++ +A+   L   HL   G+DV   E
Sbjct: 234 AAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE 293

Query: 292 PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 328
           P   +       N+ +TPH+G  T  +  +M  ++  
Sbjct: 294 P-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQ 329

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  173 bits (440), Expect = 1e-51
 Identities = 78/300 (26%), Positives = 136/300 (45%), Gaps = 32/300 (10%)

Query: 51  DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 109
            VI  +  + V  T ++    +  A ++K+I     G + +D+  AT+ GI V ++ G  
Sbjct: 38  GVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSG-- 95

Query: 110 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK--------LGVPTGETLLGKTVFILGF 161
              + + AE T+ L++ L+RK +     I + +         G    E+L GK V ILG 
Sbjct: 96  -LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGM 154

Query: 162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE 221
           G IG  +A+RL PFGVK+    R          +   +  +       +D     +++ E
Sbjct: 155 GAIGKAIARRLIPFGVKLYYWSRH---------RKVNVEKELKA--RYMD----IDELLE 199

Query: 222 FASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 281
              K+D+V+  L L + T  I+N+  +  ++ G  LVNI RG L+D +A+   ++ G L 
Sbjct: 200 ---KSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLK 255

Query: 282 GLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLT 340
           G   DV   EP   ++        ++TPH  G+   +   +  + V ++   L    P  
Sbjct: 256 GYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPED 315

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  171 bits (436), Expect = 5e-51
 Identities = 67/288 (23%), Positives = 110/288 (38%), Gaps = 32/288 (11%)

Query: 53  IANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 111
             +   +      R+D++ +    ++++I     G +  D++A T  G+ +  +P     
Sbjct: 43  CRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPD---L 99

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PT--GETLLGKTVFILGFGNIGVE 167
                AEL I L +GL R        +   K     P   G  L   TV  LG G IG+ 
Sbjct: 100 LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLA 159

Query: 168 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 227
           +A RL+ +G  +   +               L ++     +L                +D
Sbjct: 160 MADRLQGWGATLQYHEAKALDTQT----EQRLGLRQVACSELFAS-------------SD 202

Query: 228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 287
            ++  L LN  T  +VN   L+ ++ G+LLVN  RG ++D  A+   LE G LGG   DV
Sbjct: 203 FILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADV 262

Query: 288 -------AWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 328
                      P   +  +L   N L TPH+G         + +    
Sbjct: 263 FEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQ 310

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  171 bits (435), Expect = 8e-51
 Identities = 73/280 (26%), Positives = 120/280 (42%), Gaps = 28/280 (10%)

Query: 63  TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 122
               D+  I    +++++  F VGL+ VD+      G++V   P  +T      A+L I 
Sbjct: 74  NAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLT---DDVADLAIG 130

Query: 123 LMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 179
           L+L +LR+  E    + +   K           GK V I+G G IG+ +A+R   F   I
Sbjct: 131 LILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190

Query: 180 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 239
               RS                              +  + E AS +D++V    L  +T
Sbjct: 191 SYFSRS--KKPNT-------------------NYTYYGSVVELASNSDILVVACPLTPET 229

Query: 240 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPI 299
             I+N+  + ++    +L+NI RG  +D   +   L  G LGG G+DV   EP +  + +
Sbjct: 230 THIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP-EVPEKL 288

Query: 300 LKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 339
              +NV++ PHVG  T  + + MA +V        +G PL
Sbjct: 289 FGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL 328

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  174 bits (444), Expect = 2e-50
 Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 37/306 (12%)

Query: 37  PSIQVDVVP---ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDI 92
             ++V  V       +   +      +V++   +D+  ++ A ++K++ + GVGL+ VD+
Sbjct: 23  DQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDV 82

Query: 93  NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPT 147
           +AAT  G+ V   P     N  S AE  + L+L   R+      ++     ++      +
Sbjct: 83  DAATARGVLVVNAPT---SNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF---S 136

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID 207
           G  + GKTV ++G G IG  +A+R+  FG  ++A              S A A + GI  
Sbjct: 137 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY---------VSPARAAQLGI-- 185

Query: 208 DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD 267
           +L+      +D+    ++AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D
Sbjct: 186 ELLS----LDDLL---ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD 238

Query: 268 YEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 327
             A+A  +  GH+   G+DV  TEP   + P+ +   V++TPH+G  T  +         
Sbjct: 239 EAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQVVVTPHLGASTAEAQDRAGT--- 294

Query: 328 DVALQL 333
           DVA  +
Sbjct: 295 DVAESV 300

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  171 bits (435), Expect = 5e-50
 Identities = 83/305 (27%), Positives = 130/305 (42%), Gaps = 50/305 (16%)

Query: 31  EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 84
           E L+      ++    +   +     I + H   +  +T  L  + I+ A ++  I  F 
Sbjct: 19  ESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTH-LTEDVINAAEKLVAIGAFA 77

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 139
           +G   VD++AA + GI V   P     N  S AEL I  +L LLR       +    +  
Sbjct: 78  IGTNQVDLDAAAKRGIPVFNAPF---SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGN 134

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA----TKRSWASHSQVSCQ 195
           +   G        GK + I+G+G+IG +L       G+ +       K            
Sbjct: 135 KLAAG---SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP---------- 181

Query: 196 SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS 255
               A +   + DL+             + +DVV   +  N  T  ++    +S MK GS
Sbjct: 182 -LGNATQVQHLSDLL-------------NMSDVVSLHVPENPSTKNMMGAKEISLMKPGS 227

Query: 256 LLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHV 311
           LL+N +RG ++D  A+A  L   HL G  IDV  TEP   +D    P+ +F NVL+TPH+
Sbjct: 228 LLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI 287

Query: 312 GGVTE 316
           GG T+
Sbjct: 288 GGSTQ 292

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  168 bits (428), Expect = 7e-50
 Identities = 62/333 (18%), Positives = 128/333 (38%), Gaps = 43/333 (12%)

Query: 28  YTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDSNCISRANQM--KLIM 81
           + KE+   +  ++V+       P+ +A       + V + +   +  +          + 
Sbjct: 16  FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 75

Query: 82  QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 141
              VG++ +D+  A   G ++  +P     +  + AE        +LR+   M   + + 
Sbjct: 76  LRNVGVDNIDMAKAKELGFQITNVPV---YSPNAIAEHAAIQAARILRQDKAMDEKVARH 132

Query: 142 KLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199
            L      G  +  + V ++G G+IG    + +  FG K+I                   
Sbjct: 133 DLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDI--------------- 177

Query: 200 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 259
             +N  ++         +D+++   +ADV+   +        ++N   ++ MK+  ++VN
Sbjct: 178 -FRNPELEKKGYYVDSLDDLYK---QADVISLHVPDVPANVHMINDESIAKMKQDVVIVN 233

Query: 260 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF-------------DPNDPILKFKNVL 306
           ++RG L+D +A+   L+ G + G  +DV   E                    ++   NVL
Sbjct: 234 VSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVL 293

Query: 307 ITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 339
           +TP     T H+ R+M     D  L+L  G   
Sbjct: 294 VTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEA 326

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  167 bits (426), Expect = 1e-49
 Identities = 60/309 (19%), Positives = 122/309 (39%), Gaps = 24/309 (7%)

Query: 34  QNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 93
            + P +++         + +      ++         +++AN++        G++ + ++
Sbjct: 25  AHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLAKANKLSWFQSTYAGVDVL-LD 83

Query: 94  AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 153
           A  R   ++  + G         +E     +L L+R+    R   +Q+       + L G
Sbjct: 84  ARCRRDYQLTNVRG---IFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKG 140

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 213
           +T+ ILG G+IG  +A   + FG+K++   RS    +                       
Sbjct: 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQL--------------- 185

Query: 214 GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH 273
                + +  ++ADV+V  L   ++T  +   S     K G++L N+ RG  ++   +  
Sbjct: 186 ---PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLT 242

Query: 274 YLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL 333
            L  G LG   +DV   EP   + P+    N++ITPH    +      +A++     ++ 
Sbjct: 243 ALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVRNYIRF 300

Query: 334 HAGTPLTGL 342
             G PL G 
Sbjct: 301 IDGQPLDGK 309

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  165 bits (421), Expect = 6e-49
 Identities = 69/332 (20%), Positives = 125/332 (37%), Gaps = 31/332 (9%)

Query: 14  RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISR 73
            ++F  P F A+  +     +  P  +V    + D           +V    ++   +  
Sbjct: 5   EIIFYHPTFNAAW-WVNALEKALPHARVREWKVGDNNPA----DYALVWQPPVE---MLA 56

Query: 74  ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAELTIYLMLGLLRK 130
             ++K +   G G++ +         +  A IP    + TG      E  +  +L   R+
Sbjct: 57  GRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRR 116

Query: 131 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 190
            ++ +    Q         T    +V I+G G +G ++A+ L+ +G  +    RS  S  
Sbjct: 117 FDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP 176

Query: 191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 250
            V                        E++  F ++  V++  L    QT GI+N   L  
Sbjct: 177 GVESYVGR------------------EELRAFLNQTRVLINLLPNTAQTVGIINSELLDQ 218

Query: 251 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH 310
           +  G+ ++N+ARG  +    +   L+ G L G  +DV   EP     P+ +   V +TPH
Sbjct: 219 LPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPH 278

Query: 311 VGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 342
           +  VT          +     QL  G P+TG 
Sbjct: 279 IAAVT--RPAEAIDYISRTITQLEKGEPVTGQ 308

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  165 bits (420), Expect = 1e-48
 Identities = 68/343 (19%), Positives = 123/343 (35%), Gaps = 50/343 (14%)

Query: 25  SHNYTKEYLQNY-PSIQVDVVPISDVP------DVIANYH-LCVVKTMRLDSNCISRANQ 76
             +      +        D+  + D        ++ A +  + +      +   +    +
Sbjct: 8   VRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKK 67

Query: 77  M--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 134
           +  K I+    G + +D   A   G  +A +P     +  + AEL +   + LLR     
Sbjct: 68  LGVKYILTRTAGTDHIDKEYAKELGFPMAFVPR---YSPNAIAELAVTQAMMLLRHTAYT 124

Query: 135 RMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ 191
                +K          + +   TV ++G G IG   A+     G  +I           
Sbjct: 125 TSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG-------EDV 177

Query: 192 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSM 251
              +          +D+++              K+D++       K+   +V + FL  M
Sbjct: 178 FEIKGIEDYCTQVSLDEVL-------------EKSDIITIHAPYIKENGAVVTRDFLKKM 224

Query: 252 KKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP---------FDPNDPILK- 301
           K G++LVN ARG L+D EA+   +E G LGG G DV   E              +P+ + 
Sbjct: 225 KDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEK 284

Query: 302 ----FKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT 340
               +  VLITPH+G  T+ + ++M +V       L       
Sbjct: 285 LVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCP 327

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  165 bits (419), Expect = 2e-48
 Identities = 66/341 (19%), Positives = 135/341 (39%), Gaps = 48/341 (14%)

Query: 25  SHNYTKEYLQNY---PSIQVDVVPISDVPD---VIANYH-LCVVKTMRLDSNCISR--AN 75
           +     +Y + +       ++        +       +  +  ++T    +    +  A 
Sbjct: 8   ARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAY 67

Query: 76  QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR 135
            +K +    VG + +D+ A  + GI+++ +P     + A+ AE  +   L LLR   +++
Sbjct: 68  GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMGKVQ 124

Query: 136 MAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 192
             ++       G   G+ L  +TV ++G G+IG    K  + FG K+IA       +   
Sbjct: 125 AQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA-------YDPY 177

Query: 193 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 252
             +          ++DL               ++DV+   +   +Q   I+N++  + MK
Sbjct: 178 PMKGDHPDFDYVSLEDLF-------------KQSDVIDLHVPGIEQNTHIINEAAFNLMK 224

Query: 253 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP-------------FDPNDPI 299
            G++++N AR  L+D +A+   L+ G L G+GID    E                  D +
Sbjct: 225 PGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDEL 284

Query: 300 LKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT 340
           L   NV+++PH+   TE +  +M        +        +
Sbjct: 285 LGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETS 325

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  166 bits (423), Expect = 3e-48
 Identities = 81/301 (26%), Positives = 135/301 (44%), Gaps = 42/301 (13%)

Query: 31  EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 84
           EY ++     V  +P +         I++ H+  +  +T +L     + AN++  +  F 
Sbjct: 30  EYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRT-QLTEEIFAAANRLIAVGCFS 88

Query: 85  VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 139
           VG   V++ AA + GI V   P     N  S AEL I  ++ L+R    +         E
Sbjct: 89  VGTNQVELKAARKRGIPVFNAPF---SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWE 145

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 199
           +  +G      + GKT+ I+G+GNIG ++       G+ +         +          
Sbjct: 146 KTAIG---SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRY-------YDTSDKLQYGN 195

Query: 200 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 259
                 +D+L+               +DVV   +  +K T+ ++ ++ L  MKKG+ L+N
Sbjct: 196 VKPAASLDELL-------------KTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242

Query: 260 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHVGGVT 315
            ARG  +D EA+A  L+ GHL G  IDV   EP    +    P+   +NV++TPH+GG T
Sbjct: 243 NARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGST 302

Query: 316 E 316
           E
Sbjct: 303 E 303

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  152 bits (385), Expect = 5e-43
 Identities = 58/314 (18%), Positives = 122/314 (38%), Gaps = 54/314 (17%)

Query: 28  YTKEYLQNYPSIQVDVVP-ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 85
               +        +  +P  +     +A   + +V+++  +    ++  + ++ +    +
Sbjct: 11  VVDAFFA--DQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTI 67

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + +D++     GI  +  PG    NA    +  +  +L +   +              
Sbjct: 68  GTDHLDLDYFAEAGIAWSSAPG---CNARGVVDYVLGCLLAMAEVR-------------- 110

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI 205
             G  L  +T  ++G G +G  L + LR  G K++             C     A +   
Sbjct: 111 --GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLV------------CDPPRQAREPDG 156

Query: 206 IDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNKSFLSSMKKGSLLVNIA 261
             + V      E +     +ADV+     LN+     T  ++++  L++++ G+ LVN +
Sbjct: 157 --EFVS----LERLLA---EADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNAS 207

Query: 262 RGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRS 321
           RG ++D +A+   LE G    + +DV   EP    DP L  + ++ TPH+ G   +S   
Sbjct: 208 RGAVVDNQALRRLLEGGADLEVALDVWEGEP--QADPELAARCLIATPHIAG---YSLEG 262

Query: 322 MAKVVGDVALQLHA 335
             +    +     A
Sbjct: 263 KLRGTAQIYQAYCA 276

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  148 bits (377), Expect = 7e-42
 Identities = 63/318 (19%), Positives = 123/318 (38%), Gaps = 67/318 (21%)

Query: 28  YTKEYLQNYPSIQVDVVPISDV-PDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 85
           Y +E        +V  VP   +  + + +    +V+++ +++ + +S    +  +     
Sbjct: 14  YARELFSRLG--EVKAVPGRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATA 70

Query: 86  GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145
           G + VD     + GI  +  PG    NA +  E     +L L  +               
Sbjct: 71  GTDHVDEAWLKQAGIGFSAAPG---CNAIAVVEYVFSALLMLAERD-------------- 113

Query: 146 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC----QSSALAV 201
             G +L  +T+ I+G GN+G  L  RL   G++ +             C     +     
Sbjct: 114 --GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL------------CDPPRAARGDEG 159

Query: 202 KNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKSFLSSMKKGSLL 257
               +D+LV              +ADV+     L K    +T  + +++ +  +K G++L
Sbjct: 160 DFRTLDELV-------------QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAIL 206

Query: 258 VNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGG---- 313
           +N  RG ++D  A+   L  G    + +DV   EP D N  +L+  ++  T H+ G    
Sbjct: 207 INACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVDIG-TSHIAGYTLE 264

Query: 314 ----VTEHSYRSMAKVVG 327
                T   + + +  +G
Sbjct: 265 GKARGTTQVFEAYSAFIG 282

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 85.0 bits (210), Expect = 5e-19
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 19/139 (13%)

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 206
           T  T+ G  V +LG G +G+ +A++    G K+    R     ++              I
Sbjct: 149 TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLAR--------------I 194

Query: 207 DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL 266
            ++  E        +     DV +  +      A +V  + L+ M   + ++++A     
Sbjct: 195 AEMGMEPFHISKAAQELRDVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKPGG 249

Query: 267 DYEAIAHYLECGHLGGLGI 285
                A       L   G+
Sbjct: 250 TDFRYAEKRGIKALLVPGL 268

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 37/150 (24%)

Query: 135 RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQV 192
            +AI+       T  T+ G  V +LG G  G+ +A+     G  VK+ A  RS A  ++ 
Sbjct: 145 MLAIQH------TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGA--RSSAHLAR- 195

Query: 193 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 252
                        I ++       +++ E     D+ +     N   + I+N++ LSSM 
Sbjct: 196 -------------ITEMGLVPFHTDELKEHVKDIDICI-----NTIPSMILNQTVLSSMT 237

Query: 253 KGSLLVNIA--RGGLLDYEA-----IAHYL 275
             +L++++A   GG  D++      I   L
Sbjct: 238 PKTLILDLASRPGG-TDFKYAEKQGIKALL 266

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
            T+   G G     L++ L P G +II T R+
Sbjct: 6   GTLLSFGHGYTARVLSRALAPQGWRIIGTSRN 37

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G  + G  V I GFGN+G   A+     G +++A          V   +  +  + GI  
Sbjct: 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA----------VQDHTGTVYNEAGIDP 279

Query: 207 DDLVDEKGCHEDIFEFA 223
            DL+        +  + 
Sbjct: 280 YDLLRHVQEFGGVRGYP 296

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G  L    + I GFGN G  LAK +   G K+I           +S  +  L   +G+ I
Sbjct: 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG----------ISDANGGLYNPDGLDI 265

Query: 207 DDLVDEKGCHEDIFEFASKA 226
             L+D++     +    +  
Sbjct: 266 PYLLDKRDSFGMVTNLFTDV 285

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G  L G  V + G G +G  +A      G++++A          V+     +    G+ +
Sbjct: 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA----------VATSMGGMYAPEGLDV 262

Query: 207 DDLVDEKGCHEDIFEFA 223
            +++        +    
Sbjct: 263 AEVLSAYEATGSLPRLD 279

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185
             + I G G++G+ELA+RL   G ++   +RS
Sbjct: 4   SKILIAGCGDLGLELARRLTAQGHEVTGLRRS 35

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
                 KT  + GFGN+G+   + L  FG K I           V     ++   +GI  
Sbjct: 239 TPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT----------VGESDGSIWNPDGIDP 288

Query: 207 DDLVDEKGCHEDIFEFA 223
            +L D K  H  I  F 
Sbjct: 289 KELEDFKLQHGTILGFP 305

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Length = 419

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 15/85 (17%)

Query: 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIATKRSWASHSQVSCQSSAL 199
           K LG    +TL GKT+ I G+GN G  LAK +   FG+K++A          VS     +
Sbjct: 203 KVLGW---DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVA----------VSDSKGGI 249

Query: 200 AVKNGI-IDDLVDEKGCHEDIFEFA 223
              +G+  D+++  K  H  + +F 
Sbjct: 250 YNPDGLNADEVLKWKNEHGSVKDFP 274

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Length = 415

 Score = 40.5 bits (96), Expect = 5e-04
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIATKRSWASHSQVSCQSSALAVKNGI- 205
           G      TV + GFGN+G   A  + +  G K++A          VS     +    G  
Sbjct: 204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA----------VSDSRGGIYNPEGFD 253

Query: 206 IDDLVDEKGCHEDIFEFA 223
           +++L+  K  H  +  + 
Sbjct: 254 VEELIRYKKEHGTVVTYP 271

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
              + GKTV I G GN+G   A  L   G K+IA          VS  +     K G+ +
Sbjct: 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA----------VSDINGVAYRKEGLNV 254

Query: 207 DDLVDEK 213
           + +   K
Sbjct: 255 ELIQKNK 261

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 206
           G  +    + + GFGN+G    K +   G K+ A      +    +  + AL  +NGI  
Sbjct: 207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA-----IAEWDRNEGNYALYNENGIDF 261

Query: 207 DDLVDEKGCHEDIFEFA 223
            +L+  K  ++ +  F 
Sbjct: 262 KELLAYKEANKTLIGFP 278

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Length = 279

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 17/102 (16%)

Query: 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC 215
           + ++G G IG  LA  LR  G  +I       S  Q +C+    AV+  ++D+   +   
Sbjct: 3   IGVVGLGLIGASLAGDLRRRGHYLIGV-----SRQQSTCE---KAVERQLVDEAGQD--- 51

Query: 216 HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL 257
                     A ++  C  + +     + +  +  +   +++
Sbjct: 52  ----LSLLQTAKIIFLCTPI-QLILPTL-EKLIPHLSPTAIV 87

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 48/321 (14%), Positives = 81/321 (25%), Gaps = 88/321 (27%)

Query: 7   SSDKNITRVLFCGP--HFPASHN-------YTKEYLQNYPSIQVDVVP------------ 45
           +  K +T  L      H    H+         K  L  Y   +   +P            
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 46  -----ISDVPDVIANY-HLC---VVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAAT 96
                I D      N+ H+    +   +    N +  A   K+  +  V      I    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 97  RCGIKVARIPGDVTGNAASCA----------ELTIYLM---LGLLRKQNEM----RMAIE 139
              I    I  DV                  E TI +    L L  K        R  ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 140 QKKLGV---PTGETLLGKTVFILGFGNIG-----VELAKRLRPF----------GVKIIA 181
              +                +      IG     +E  +R+  F            KI  
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSH--IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 182 TKRSWASHSQVSCQSSALAV-------KNGIIDDLVDEKGCHEDIFEFASKAD-VVVCC- 232
              +W      +   S L         K  I D+    +     I +F  K +  ++C  
Sbjct: 510 DSTAW------NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563

Query: 233 ------LSLNKQTAGIVNKSF 247
                 ++L  +   I  ++ 
Sbjct: 564 YTDLLRIALMAEDEAIFEEAH 584

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A Length = 290

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 16/81 (19%)

Query: 154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 211
           KT++I G G IG  LA  ++      KI+   R        S +S  +A++ GI+D+   
Sbjct: 7   KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNR--------SDRSRDIALERGIVDE--- 55

Query: 212 EKGCHEDIFEFASKADVVVCC 232
                 D   FA+ ADV++  
Sbjct: 56  ---ATADFKVFAALADVIILA 73

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score = 39.8 bits (94), Expect = 9e-04
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182
           ++  G    ++L G  V + G GN+   L K+L   G K++ T
Sbjct: 163 KEAFG---SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVT 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	346
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.95
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.92
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.92
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.86
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.83
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.77
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.75
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.72
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.71
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.69
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.65
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.33
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.27
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.26
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.26
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.26
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.25
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.25
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.25
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.21
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.2
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.2
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.19
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.19
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.18
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.16
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.16
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.14
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.14
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.13
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.13
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.13
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.1
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.06
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.05
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.04
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.0
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	98.98
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.96
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.93
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.93
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.92
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.91
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.43
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.9
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.9
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.88
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.86
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.86
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.86
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.85
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.85
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.84
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.82
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.81
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.8
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.79
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.76
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.73
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.72
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.71
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.67
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.64
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.59
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.58
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.57
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.57
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.53
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.53
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.52
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.51
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.5
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.47
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.47
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.44
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.44
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.44
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.43
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.43
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.42
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.41
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.4
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.4
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.4
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.39
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.39
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.37
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.34
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.33
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.31
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.31
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.25
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.24
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.24
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.2
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.2
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.2
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.2
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.19
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.18
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.17
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.15
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.14
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.12
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.11
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.09
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.09
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.08
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.07
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.05
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.03
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.0
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.0
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.0
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.95
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.95
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.94
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.91
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.89
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.89
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.87
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.85
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.84
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.82
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.76
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.75
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.75
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.74
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.73
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.68
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.67
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.63
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.63
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.62
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.62
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.61
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.61
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.6
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.57
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.57
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.55
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.55
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.51
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.5
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.5
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.43
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.41
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.4
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.38
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.28
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.25
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.21
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.18
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.18
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.16
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.15
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.15
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.12
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.11
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.1
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.08
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.06
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.04
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.03
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.03
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	97.02
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.99
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.99
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.98
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.98
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.96
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.95
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.9
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.89
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.88
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.84
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.82
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.8
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.8
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.79
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.79
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.78
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.76
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.73
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.72
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.71
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	96.7
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.68
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.68
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.68
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.68
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.67
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.65
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.64
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.6
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.6
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.57
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.56
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.55
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.54
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.54
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.54
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.54
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.53
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.5
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	96.37
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.36
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.34
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.34
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.32
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.32
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.31
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.31
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.29
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.27
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.26
4had_A	350	Probable oxidoreductase protein; structural genomi	96.24
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.24
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.23
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.2
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.19
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.19
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.19
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.18
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.17
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.17
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.16
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.16
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	96.15
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.14
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.12
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.11
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.09
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.08
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.08
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.08
3on5_A	362	BH1974 protein; structural genomics, joint center	96.06
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.06
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	96.05
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.04
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.03
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.03
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.99
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.98
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.98
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.98
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	95.96
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	95.95
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	95.95
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.95
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.93
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	95.92
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.92
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	95.9
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	95.89
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.88
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.87
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	95.87
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.84
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.82
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.8
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.77
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	95.74
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.74
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.73
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.72
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	95.71
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	95.7
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.69
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.69
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	95.68
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.67
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	95.64
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	95.62
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.6
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.59
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.58
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.56
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.54
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	95.53
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	95.52
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.51
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.51
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.49
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.48
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.45
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.45
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	95.42
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	95.42
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.41
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.4
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	95.4
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.39
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	95.38
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.37
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.37
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.36
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	95.36
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.34
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.33
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.32
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.31
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	95.31
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.29
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	95.28
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.28
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.27
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.26
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.25
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	95.25
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.23
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.21
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.21
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	95.2
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.18
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.17
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.17
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.17
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.15
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	95.11
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.11
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.09
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.08
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	95.07
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	95.07
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	95.04
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.04
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.03
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	94.94
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	94.94
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	94.94
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	94.91
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	94.89
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.88
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	94.86
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.86
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	94.85
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	94.83
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.82
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.75
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.74
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.71
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	94.69
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	94.67
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.64
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.64
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	94.63
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	94.6
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	94.59
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.59
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.55
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	94.54
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.48
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	94.46
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.45
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.43
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.42
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	94.42
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.42
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	94.41
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.36
1lnq_A	336	MTHK channels, potassium channel related protein;	94.36
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.35
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.34
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.34
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.3
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	94.29
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	94.24
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	94.21
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.19
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	94.19
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.17
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	94.11
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	94.11
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.06
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.0
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	93.99
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	93.97
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	93.94
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.93
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	93.86
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	93.85
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	93.85
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.83
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	93.82
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	93.82
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	93.82
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	93.81
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	93.77
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	93.77
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	93.77
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	93.74
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	93.71
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	93.7
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	93.64
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.61
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.59
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.59
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	93.58
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.54
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	93.52
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.5
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	93.4
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	93.35
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	93.35
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	93.35
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.28
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	93.26
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	93.2
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	93.2
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	93.2
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.19
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	93.12
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	93.03
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	92.97
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	92.85
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	92.85
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	92.85
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	92.84
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	92.83
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	92.81
3l5o_A	270	Uncharacterized protein from DUF364 family; RARE m	92.81
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	92.76
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	92.67
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	92.67
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	92.65
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.57
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	92.46
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	92.45
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	92.42
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	92.42
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	92.41
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	92.34
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	92.33
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.32
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	92.28
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	92.27
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	92.26
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	92.26
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	92.26
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	92.19
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	92.18
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	92.17
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	92.13
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	92.09
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	92.07
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	92.05
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	92.03
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	91.93
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	91.92
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	91.91
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	91.9
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	91.89
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.86
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	91.85
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	91.85
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	91.83
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	91.73
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	91.72
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	91.66
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	91.53

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=3.1e-74  Score=552.88  Aligned_cols=304  Identities=24%  Similarity=0.338  Sum_probs=263.1

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCc-ccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCccCCcc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDV-PDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGV   90 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   90 (346)
                      |||+++..... ...+.++.++.. ++++...+..++ .+.++++|+++++ ..++++++|+++|+||||+++|+|+|||
T Consensus         1 Mkil~~~~~~~-~~p~~~e~l~~~-~~~~~~~~~~~~~~~~l~~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~i   78 (334)
T 3kb6_A            1 MNVLFTSVPQE-DVPFYQEALKDL-SLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHI   78 (334)
T ss_dssp             -CEEECSCCTT-HHHHHHHHTTTS-CEEECSSCGGGSCHHHHHHCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTB
T ss_pred             CEEEEeCCCcc-cCHHHHHHHHhC-CcEEEeCCcccCCHHHhcCCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchh
Confidence            68999864432 233444555443 344443332222 3467889988775 5789999999999999999999999999


Q ss_pred             chhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC---CCccccCCCeEEEEecCHHHHH
Q 019081           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVE  167 (346)
Q Consensus        91 d~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~---~~~~~l~g~tvgIiG~G~IG~~  167 (346)
                      |+++|+++||.|+|+||+   |+.+||||++++||++.|++..+.+.++++.|..   ..+.+|+|+||||||+|+||++
T Consensus        79 d~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~  155 (334)
T 3kb6_A           79 DLDYCKKKGILVTHIPAY---SPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSR  155 (334)
T ss_dssp             CHHHHHHHTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHH
T ss_pred             cHHHHHHCCCEEEECCCc---CcHHHHHHHHHHHHHHhhccccccccccccccccccccccceecCcEEEEECcchHHHH
Confidence            999999999999999998   8899999999999999999999999999998864   3578999999999999999999


Q ss_pred             HHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHH
Q 019081          168 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF  247 (346)
Q Consensus       168 vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~  247 (346)
                      +|+++++|||+|++||+.....                   .........++++++++||+|++|||+|++|+||||++.
T Consensus       156 va~~~~~fg~~v~~~d~~~~~~-------------------~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~  216 (334)
T 3kb6_A          156 VAMYGLAFGMKVLCYDVVKRED-------------------LKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEER  216 (334)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHH-------------------HHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHH
T ss_pred             HHHhhcccCceeeecCCccchh-------------------hhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHH
Confidence            9999999999999999864321                   001111346899999999999999999999999999999


Q ss_pred             HccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCC---------------CCCCCCceEEccCCC
Q 019081          248 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND---------------PILKFKNVLITPHVG  312 (346)
Q Consensus       248 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~---------------pL~~~~nviiTPH~a  312 (346)
                      |++||+|++|||+|||++||++||++||++|+|+||+||||++||++.+|               |||++|||++|||+|
T Consensus       217 l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia  296 (334)
T 3kb6_A          217 ISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIA  296 (334)
T ss_dssp             HHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCT
T ss_pred             HhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEECCchh
Confidence            99999999999999999999999999999999999999999999987776               688999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 019081          313 GVTEHSYRSMAKVVGDVALQLHAGTPLT  340 (346)
Q Consensus       313 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~  340 (346)
                      |+|.++++++.+.+++|+.+|++|+++.
T Consensus       297 ~~T~ea~~~~~~~~~~ni~~~l~Ge~~~  324 (334)
T 3kb6_A          297 YYTDKSLERIREETVKVVKAFVKGDLEQ  324 (334)
T ss_dssp             TCBHHHHHHHHHHHHHHHHHHHHTCGGG
T ss_pred             hChHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            9999999999999999999999999764

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=3.5e-72  Score=539.75  Aligned_cols=307  Identities=24%  Similarity=0.396  Sum_probs=268.1

Q ss_pred             CCCcceEEEeCCCCCCChhHHHHHHhcCCCeEEEc----CCCCCcccccCcceEEEEe-CCCCCHHHHhcC-CCCeEEEE
Q 019081            9 DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVK-TMRLDSNCISRA-NQMKLIMQ   82 (346)
Q Consensus         9 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~   82 (346)
                      .+.++||+++.+..++   .. +.++...++.+..    .+.+++.+.++++|+++++ ..++++++|+++ |+||||++
T Consensus        25 ~~~~~kvlv~~~~~~~---~~-~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~  100 (345)
T 4g2n_A           25 THPIQKAFLCRRFTPA---IE-AELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIAT  100 (345)
T ss_dssp             --CCCEEEESSCCCHH---HH-HHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEE
T ss_pred             cCCCCEEEEeCCCCHH---HH-HHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEE
Confidence            3557899999876432   22 2333222333322    2345677788999999886 478999999997 79999999


Q ss_pred             cCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCccccCCCeEE
Q 019081           83 FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVF  157 (346)
Q Consensus        83 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~-----~~~~~l~g~tvg  157 (346)
                      +|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|+|..     ..+.+|+|||||
T Consensus       101 ~~~G~D~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvG  177 (345)
T 4g2n_A          101 LSVGYDHIDMAAARSLGIKVLHTPDV---LSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLG  177 (345)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCSC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEE
T ss_pred             cCCcccccCHHHHHhCCEEEEECCcc---cchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEE
Confidence            99999999999999999999999998   8899999999999999999999999999999963     247899999999


Q ss_pred             EEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC-cCCHHHHhhcCCEEEEeecCC
Q 019081          158 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFASKADVVVCCLSLN  236 (346)
Q Consensus       158 IiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV~~~lPlt  236 (346)
                      |||+|.||+++|+++++|||+|++|||+.....                  ... ... ..++++++++||+|++|+|+|
T Consensus       178 IIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~------------------~~~-g~~~~~~l~ell~~sDvV~l~~Plt  238 (345)
T 4g2n_A          178 IFGMGRIGRAIATRARGFGLAIHYHNRTRLSHA------------------LEE-GAIYHDTLDSLLGASDIFLIAAPGR  238 (345)
T ss_dssp             EESCSHHHHHHHHHHHTTTCEEEEECSSCCCHH------------------HHT-TCEECSSHHHHHHTCSEEEECSCCC
T ss_pred             EEEeChhHHHHHHHHHHCCCEEEEECCCCcchh------------------hhc-CCeEeCCHHHHHhhCCEEEEecCCC
Confidence            999999999999999999999999999753310                  000 111 248999999999999999999


Q ss_pred             ccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcH
Q 019081          237 KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTE  316 (346)
Q Consensus       237 ~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~  316 (346)
                      ++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++|| ++++|||++|||++|||+||+|.
T Consensus       239 ~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nvilTPHia~~t~  317 (345)
T 4g2n_A          239 PELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSATH  317 (345)
T ss_dssp             GGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECCSCTTCBH
T ss_pred             HHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC-CCCchHHhCCCEEEcCccCcCCH
Confidence            99999999999999999999999999999999999999999999999999999999 78999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          317 HSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       317 ~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      +++.+|.+.+++|+.+|++|+++.|.
T Consensus       318 e~~~~~~~~~~~ni~~~l~g~~~~~~  343 (345)
T 4g2n_A          318 ETRDAMGWLLIQGIEALNQSDVPDNL  343 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999999999998875

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=7.6e-72  Score=533.73  Aligned_cols=305  Identities=21%  Similarity=0.317  Sum_probs=266.1

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCcccccCcceEEEEeCCCCCHHHH-hcCCCCeEEEEcCccCCcc
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCI-SRANQMKLIMQFGVGLEGV   90 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l-~~~~~Lk~I~~~~~G~d~i   90 (346)
                      ||||+++.+..+   .....+.+.++++++...+. ...+.+.++|+++++..++ +++| +++|+||||+++|+|+|+|
T Consensus         1 m~kil~~~~~~~---~~~~~L~~~~~~~~~~~~~~-~~~~~~~~ad~l~~~~~~~-~~~l~~~~~~Lk~I~~~~~G~d~i   75 (324)
T 3evt_A            1 MSLVLMAQATKP---EQLQQLQTTYPDWTFKDAAA-VTAADYDQIEVMYGNHPLL-KTILARPTNQLKFVQVISAGVDYL   75 (324)
T ss_dssp             -CEEEECSCCCH---HHHHHHHHHCTTCEEEETTS-CCTTTGGGEEEEESCCTHH-HHHHHSTTCCCCEEECSSSCCTTS
T ss_pred             CcEEEEecCCCH---HHHHHHHhhCCCeEEecCCc-cChHHhCCcEEEEECCcCh-HHHHHhhCCCceEEEECCcccccc
Confidence            579999987643   23333445566777654332 3345678899988776667 8999 7899999999999999999


Q ss_pred             chhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHH-HHHHHhcccCCC-CccccCCCeEEEEecCHHHHHH
Q 019081           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM-RMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVEL  168 (346)
Q Consensus        91 d~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~-~~~~~~~~~~~~-~~~~l~g~tvgIiG~G~IG~~v  168 (346)
                      |+++|+++||.|+|+||+   |+.+||||++++||++.|++..+ .+.++++.|... .+.+|+|+||||||+|.||+++
T Consensus        76 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~v  152 (324)
T 3evt_A           76 PLKALQAAGVVVANTSGI---HADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSL  152 (324)
T ss_dssp             CHHHHHHTTCEEECCTTH---HHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHH
T ss_pred             CHHHHHHCCcEEEECCCc---CchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECcCHHHHHH
Confidence            999999999999999998   88999999999999999999999 999999999865 4889999999999999999999


Q ss_pred             HHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHH
Q 019081          169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL  248 (346)
Q Consensus       169 A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l  248 (346)
                      |+++++|||+|++||++.....                  .........++++++++||+|++|+|+|++|+++|+++.|
T Consensus       153 A~~l~~~G~~V~~~dr~~~~~~------------------~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l  214 (324)
T 3evt_A          153 AAKASALGMHVIGVNTTGHPAD------------------HFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELF  214 (324)
T ss_dssp             HHHHHHTTCEEEEEESSCCCCT------------------TCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHH
T ss_pred             HHHHHhCCCEEEEECCCcchhH------------------hHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHH
Confidence            9999999999999998764321                  0111112357899999999999999999999999999999


Q ss_pred             ccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 019081          249 SSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD  328 (346)
Q Consensus       249 ~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~  328 (346)
                      +.||+|++|||+|||+++|++||++||++|+|+||+||||++||+|+++|||++|||++|||+||+|.++..++.+.+++
T Consensus       215 ~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~  294 (324)
T 3evt_A          215 QQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAA  294 (324)
T ss_dssp             HTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHH
T ss_pred             hcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCC-CCCCc
Q 019081          329 VALQLHAGT-PLTGL  342 (346)
Q Consensus       329 ni~~~~~g~-~~~~~  342 (346)
                      |+.+|++|+ ++.|+
T Consensus       295 nl~~~l~~~~~~~n~  309 (324)
T 3evt_A          295 NFAQFVKDGTLVRNQ  309 (324)
T ss_dssp             HHHHHHHHSCCCSCB
T ss_pred             HHHHHHhCCCCCCce
Confidence            999998654 56553

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=1e-71  Score=532.37  Aligned_cols=302  Identities=22%  Similarity=0.323  Sum_probs=267.3

Q ss_pred             ceEEEeCCCCCCChhHHHHH-HhcCCCeEEEcC-CCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCcc
Q 019081           13 TRVLFCGPHFPASHNYTKEY-LQNYPSIQVDVV-PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV   90 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   90 (346)
                      |||+++.+..   ..+.+.+ .+.+|++++... +.+++.+.+.++|+++++ .++++++|+++|+||||++.|+|+|+|
T Consensus         6 mkili~~~~~---~~~~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~i   81 (324)
T 3hg7_A            6 RTLLLLSQDN---AHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAE-PARAKPLLAKANKLSWFQSTYAGVDVL   81 (324)
T ss_dssp             EEEEEESTTH---HHHHHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEEC-HHHHGGGGGGCTTCCEEEESSSCCGGG
T ss_pred             cEEEEecCCC---HHHHHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEEC-CCCCHHHHhhCCCceEEEECCCCCCcc
Confidence            7999997663   3344444 456788888754 345567788999998874 345678999999999999999999999


Q ss_pred             chhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHH
Q 019081           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK  170 (346)
Q Consensus        91 d~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~  170 (346)
                      |++++.+ ||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|....+.+|+|+||||||+|.||+++|+
T Consensus        82 d~~~~~~-gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~  157 (324)
T 3hg7_A           82 LDARCRR-DYQLTNVRGI---FGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAH  157 (324)
T ss_dssp             SCTTSCC-SSEEECCCSC---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHHHH
T ss_pred             ChHHHhC-CEEEEECCCc---ChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHHHHHH
Confidence            9988765 9999999998   88999999999999999999999999999999877789999999999999999999999


Q ss_pred             HHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHcc
Q 019081          171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS  250 (346)
Q Consensus       171 ~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~  250 (346)
                      ++++|||+|++||++.....                  .........++++++++||+|++|+|+|++|+++|+++.|+.
T Consensus       158 ~l~~~G~~V~~~dr~~~~~~------------------~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~  219 (324)
T 3hg7_A          158 TGKHFGMKVLGVSRSGRERA------------------GFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEH  219 (324)
T ss_dssp             HHHHTTCEEEEECSSCCCCT------------------TCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTC
T ss_pred             HHHhCCCEEEEEcCChHHhh------------------hhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhc
Confidence            99999999999998764311                  111111346899999999999999999999999999999999


Q ss_pred             CCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHH
Q 019081          251 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVA  330 (346)
Q Consensus       251 mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni  330 (346)
                      ||+|++|||+|||++||++||++||++|+|+||+||||++||+|+++|||++|||++|||+||+|.+  .++.+.+++|+
T Consensus       220 mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl  297 (324)
T 3hg7_A          220 CKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNY  297 (324)
T ss_dssp             SCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHH
T ss_pred             CCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999976  57999999999


Q ss_pred             HHHHcCCCCCCc
Q 019081          331 LQLHAGTPLTGL  342 (346)
Q Consensus       331 ~~~~~g~~~~~~  342 (346)
                      .+|++|+++.|.
T Consensus       298 ~~~~~G~~~~~~  309 (324)
T 3hg7_A          298 IRFIDGQPLDGK  309 (324)
T ss_dssp             HHHHTTCCCTTB
T ss_pred             HHHHcCCCCcce
Confidence            999999998864

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=1.4e-70  Score=526.93  Aligned_cols=304  Identities=24%  Similarity=0.322  Sum_probs=268.2

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEEc------CCCCCcccccCcceEEEE-eCCCCCHHHHhcCCCCeEEEEcC
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV------VPISDVPDVIANYHLCVV-KTMRLDSNCISRANQMKLIMQFG   84 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~d~~i~-~~~~~~~~~l~~~~~Lk~I~~~~   84 (346)
                      ++||+++.+..++    ..+.++...  ++..      .+.+++.+.++++|++++ +..++++++|+++|+||||+++|
T Consensus         2 ~~kvlv~~~~~~~----~~~~l~~~~--~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~   75 (330)
T 4e5n_A            2 LPKLVITHRVHEE----ILQLLAPHC--ELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQACPELRVIGCAL   75 (330)
T ss_dssp             CCEEEECSCCCHH----HHHHHTTTC--EEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHCTTCCEEEESS
T ss_pred             CCEEEEecCCCHH----HHHHHHhCC--eEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhCCCCcEEEECC
Confidence            4689999765432    234454432  3332      133456778899999988 46799999999999999999999


Q ss_pred             ccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccC----CCCccccCCCeEEEEe
Q 019081           85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG----VPTGETLLGKTVFILG  160 (346)
Q Consensus        85 ~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~----~~~~~~l~g~tvgIiG  160 (346)
                      +|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|+|.    ...+.+|+|+||||||
T Consensus        76 ~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG  152 (330)
T 4e5n_A           76 KGFDNFDVDACTARGVWLTFVPDL---LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLG  152 (330)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEEC
T ss_pred             CcccccCHHHHHhcCcEEEeCCCC---CchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEe
Confidence            999999999999999999999998   889999999999999999999999999999986    2357899999999999


Q ss_pred             cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCccc
Q 019081          161 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQT  239 (346)
Q Consensus       161 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T  239 (346)
                      +|.||+++|+++++|||+|++||++......                  ....+ ...++++++++||+|++|+|+|++|
T Consensus       153 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~------------------~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t  214 (330)
T 4e5n_A          153 MGAIGLAMADRLQGWGATLQYHEAKALDTQT------------------EQRLGLRQVACSELFASSDFILLALPLNADT  214 (330)
T ss_dssp             CSHHHHHHHHHTTTSCCEEEEECSSCCCHHH------------------HHHHTEEECCHHHHHHHCSEEEECCCCSTTT
T ss_pred             eCHHHHHHHHHHHHCCCEEEEECCCCCcHhH------------------HHhcCceeCCHHHHHhhCCEEEEcCCCCHHH
Confidence            9999999999999999999999997632100                  00111 2358999999999999999999999


Q ss_pred             cCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC-------CCCCCCCCCCCCceEEccCCC
Q 019081          240 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE-------PFDPNDPILKFKNVLITPHVG  312 (346)
Q Consensus       240 ~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E-------Pl~~~~pL~~~~nviiTPH~a  312 (346)
                      +++|+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++|       |++.++|||++|||++|||+|
T Consensus       215 ~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia  294 (330)
T 4e5n_A          215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIG  294 (330)
T ss_dssp             TTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCT
T ss_pred             HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCC
Confidence            9999999999999999999999999999999999999999999999999999       999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          313 GVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       313 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      |+|.++..++.+.+++|+.+|++|+++.|.
T Consensus       295 ~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~  324 (330)
T 4e5n_A          295 SAVRAVRLEIERCAAQNILQALAGERPINA  324 (330)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHTTSCCTTB
T ss_pred             CChHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence            999999999999999999999999998764

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=4.9e-70  Score=519.55  Aligned_cols=301  Identities=22%  Similarity=0.338  Sum_probs=265.6

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCcc-
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV-   90 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i-   90 (346)
                      .|||+++.+... ...+.+++.+.+|++++..++..    ...++|+++++.  .++++|++ |+||||++.|+|+|+| 
T Consensus         3 ~mkil~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~----~~~~ad~~i~~~--~~~~~l~~-~~Lk~I~~~~aG~d~i~   74 (315)
T 3pp8_A            3 AMEIIFYHPTFN-AAWWVNALEKALPHARVREWKVG----DNNPADYALVWQ--PPVEMLAG-RRLKAVFVLGAGVDAIL   74 (315)
T ss_dssp             CEEEEEECSSSC-HHHHHHHHHHHSTTEEEEECCTT----CCSCCSEEEESS--CCHHHHTT-CCCSEEEESSSCCHHHH
T ss_pred             ceEEEEEcCCCc-hHHHHHHHHHHCCCCEEEecCCC----CccCcEEEEECC--CCHHHhCC-CCceEEEECCEeccccc
Confidence            479999887643 35667777788899998776543    346899998864  58999999 9999999999999999 


Q ss_pred             c-hhH---HhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHH
Q 019081           91 D-INA---ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGV  166 (346)
Q Consensus        91 d-~~~---~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~  166 (346)
                      | +++   +.++||.|+|+|++.  ++.+||||++++||++.|++..+++.+++|.|....+++++|+||||||+|.||+
T Consensus        75 d~~~a~~~~~~~gi~v~~~~~~~--~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~  152 (315)
T 3pp8_A           75 SKLNAHPEMLDASIPLFRLEDTG--MGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGA  152 (315)
T ss_dssp             HHHHHCTTSSCTTSCEEEC--CC--CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHH
T ss_pred             chhhhhhhhhcCCCEEEEcCCCC--ccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHH
Confidence            7 887   788999999999873  5789999999999999999999999999999987778999999999999999999


Q ss_pred             HHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHH
Q 019081          167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKS  246 (346)
Q Consensus       167 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~  246 (346)
                      ++|+++++|||+|++||++.....                  .+.......++++++++||+|++|+|+|++|+++|+++
T Consensus       153 ~vA~~l~~~G~~V~~~dr~~~~~~------------------~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~  214 (315)
T 3pp8_A          153 KVAESLQAWGFPLRCWSRSRKSWP------------------GVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSE  214 (315)
T ss_dssp             HHHHHHHTTTCCEEEEESSCCCCT------------------TCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHH
T ss_pred             HHHHHHHHCCCEEEEEcCCchhhh------------------hhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHH
Confidence            999999999999999998764311                  11111123589999999999999999999999999999


Q ss_pred             HHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHH
Q 019081          247 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV  326 (346)
Q Consensus       247 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~  326 (346)
                      .|+.||+|++|||+|||++||++||++||++|+|+||+||||++||+|++||||++|||++|||+|++|.+  .++.+.+
T Consensus       215 ~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~  292 (315)
T 3pp8_A          215 LLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYI  292 (315)
T ss_dssp             HHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHH
T ss_pred             HHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985  5799999


Q ss_pred             HHHHHHHHcCCCCCCc
Q 019081          327 GDVALQLHAGTPLTGL  342 (346)
Q Consensus       327 ~~ni~~~~~g~~~~~~  342 (346)
                      ++|+.+|++|+++.|+
T Consensus       293 ~~ni~~~~~G~~~~~~  308 (315)
T 3pp8_A          293 SRTITQLEKGEPVTGQ  308 (315)
T ss_dssp             HHHHHHHHHTCCCCCB
T ss_pred             HHHHHHHHcCCCCCce
Confidence            9999999999999764

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=5.6e-70  Score=524.05  Aligned_cols=306  Identities=24%  Similarity=0.348  Sum_probs=266.7

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEEcC---CCCCcccccCcceEEEEe-CCCCCHH-HHhcCC--CCeEEEEcC
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSN-CISRAN--QMKLIMQFG   84 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~i~~-~~~~~~~-~l~~~~--~Lk~I~~~~   84 (346)
                      ||||+++... +....+..++++.+ ++++...   ..+++.+.++++|+++++ ..+++++ +|+++|  +||+|+++|
T Consensus         1 Mmki~~~~~~-~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~   78 (343)
T 2yq5_A            1 MTKIAMYNVS-PIEVPYIEDWAKKN-DVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRI   78 (343)
T ss_dssp             -CEEEEESCC-GGGHHHHHHHHHHH-TCEEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESS
T ss_pred             CceEEEEecC-cccHHHHHHHHHhC-CeEEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECc
Confidence            5899999843 44455556665543 5555432   235677889999999886 5799999 999985  699999999


Q ss_pred             ccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHH-hcccCC---CCccccCCCeEEEEe
Q 019081           85 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE-QKKLGV---PTGETLLGKTVFILG  160 (346)
Q Consensus        85 ~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~-~~~~~~---~~~~~l~g~tvgIiG  160 (346)
                      +|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.++ +|.|..   ..+++|+|+||||||
T Consensus        79 ~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiG  155 (343)
T 2yq5_A           79 VGFNTINFDWTKKYNLLVTNVPVY---SPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIG  155 (343)
T ss_dssp             SCCTTBCSSTTCC--CEEECCSCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEEC
T ss_pred             eeecccchhHHHhCCEEEEECCCC---CcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEe
Confidence            999999999999999999999998   7899999999999999999999999999 887543   457899999999999


Q ss_pred             cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCcccc
Q 019081          161 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA  240 (346)
Q Consensus       161 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~  240 (346)
                      +|.||+++|+++++|||+|++||++.....                ...    ....++++++++||+|++|+|+|++|+
T Consensus       156 lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~----------------~~~----~~~~~l~ell~~aDvV~l~~Plt~~t~  215 (343)
T 2yq5_A          156 VGHIGSAVAEIFSAMGAKVIAYDVAYNPEF----------------EPF----LTYTDFDTVLKEADIVSLHTPLFPSTE  215 (343)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSCCGGG----------------TTT----CEECCHHHHHHHCSEEEECCCCCTTTT
T ss_pred             cCHHHHHHHHHHhhCCCEEEEECCChhhhh----------------hcc----ccccCHHHHHhcCCEEEEcCCCCHHHH
Confidence            999999999999999999999999764310                011    123589999999999999999999999


Q ss_pred             CCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCC--CCCC-----------CCCCCCCceEE
Q 019081          241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP--FDPN-----------DPILKFKNVLI  307 (346)
Q Consensus       241 ~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP--l~~~-----------~pL~~~~nvii  307 (346)
                      ++|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||  ++.+           +|||++|||++
T Consensus       216 ~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvil  295 (343)
T 2yq5_A          216 NMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVI  295 (343)
T ss_dssp             TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEE
T ss_pred             HHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999  5555           48999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          308 TPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       308 TPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      |||+|++|.+++++|.+.+++|+.+|++|+++.|.
T Consensus       296 TPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~~~~  330 (343)
T 2yq5_A          296 TPHSAFYTETSIRNMVQICLTDQLTIAKGGRPRSI  330 (343)
T ss_dssp             CSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence            99999999999999999999999999999999874

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=6.7e-70  Score=522.91  Aligned_cols=306  Identities=27%  Similarity=0.401  Sum_probs=237.2

Q ss_pred             CCcceEEEeCCCCCCChhHHHHHHhcCCCeEEE--cCCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCcc
Q 019081           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVD--VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVG   86 (346)
Q Consensus        10 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G   86 (346)
                      |.+++|+++.+..++   ..+.+.+.+ .+...  ..+.+++.+.++++|+++++ ..++++++|+++|+||||+++|+|
T Consensus        28 ~~~~~vl~~~~~~~~---~~~~L~~~~-~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G  103 (340)
T 4dgs_A           28 NVKPDLLLVEPMMPF---VMDELQRNY-SVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWMEKLPSLGIIAINGVG  103 (340)
T ss_dssp             -----CEECSCCCHH---HHHTHHHHS-CCEETTCGGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHCSSCCEEEEESSC
T ss_pred             CCCCEEEEECCCCHH---HHHHHhcCC-cEEEeCCCCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCC
Confidence            456789999876432   222222233 22221  11234455666899999886 468999999999999999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC----CccccCCCeEEEEecC
Q 019081           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFG  162 (346)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~----~~~~l~g~tvgIiG~G  162 (346)
                      +|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|+|...    .+.+|+|+||||||+|
T Consensus       104 ~d~id~~~a~~~gI~V~n~pg~---~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG  180 (340)
T 4dgs_A          104 TDKVDLARARRRNIDVTTTPGV---LADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLG  180 (340)
T ss_dssp             CTTBCHHHHHHTTCEEECCCSS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCS
T ss_pred             ccccCHHHHHhCCEEEEECCCC---CcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCC
Confidence            9999999999999999999998   88999999999999999999999999999999742    4689999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       163 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~l  242 (346)
                      .||+++|+++++|||+|++|||+.....                 . ..   ...++++++++||+|++|+|+|++|+++
T Consensus       181 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----------------~-~~---~~~sl~ell~~aDvVil~vP~t~~t~~l  239 (340)
T 4dgs_A          181 QIGRALASRAEAFGMSVRYWNRSTLSGV-----------------D-WI---AHQSPVDLARDSDVLAVCVAASAATQNI  239 (340)
T ss_dssp             HHHHHHHHHHHTTTCEEEEECSSCCTTS-----------------C-CE---ECSSHHHHHHTCSEEEECC---------
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCccccc-----------------C-ce---ecCCHHHHHhcCCEEEEeCCCCHHHHHH
Confidence            9999999999999999999998754310                 0 00   1358999999999999999999999999


Q ss_pred             CCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHH
Q 019081          243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       243 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~  322 (346)
                      ++++.|+.||+|++|||+|||++||+++|++||++|+|+||+||||++||+++ +|||++|||++|||+|++|.+++.++
T Consensus       240 i~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~-~~L~~~~nvilTPHia~~t~e~~~~~  318 (340)
T 4dgs_A          240 VDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTVLMPHQGSATVETRMAM  318 (340)
T ss_dssp             -CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCC-SHHHHSSSEEECSSCSSCCHHHHHHH
T ss_pred             hhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCc-cchhhCCCEEEcCcCCcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999865 59999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCccccC
Q 019081          323 AKVVGDVALQLHAGTPLTGLEFVN  346 (346)
Q Consensus       323 ~~~~~~ni~~~~~g~~~~~~~~~~  346 (346)
                      .+.+++|+.+|++|+++.|.  ||
T Consensus       319 ~~~~~~nl~~~~~g~~~~~~--Vn  340 (340)
T 4dgs_A          319 GKLVLANLAAHFAGEKAPNT--VN  340 (340)
T ss_dssp             HHHHHHHHHHHHTTSCCTTB--C-
T ss_pred             HHHHHHHHHHHHcCCCCCCC--cC
Confidence            99999999999999999864  55

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=1.3e-68  Score=524.28  Aligned_cols=307  Identities=27%  Similarity=0.362  Sum_probs=261.5

Q ss_pred             CCCCCcceEEEeCCCCCCChhHHHHHHhcC--CCeEEEc--CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEE
Q 019081            7 SSDKNITRVLFCGPHFPASHNYTKEYLQNY--PSIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIM   81 (346)
Q Consensus         7 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~   81 (346)
                      |-++.+|||+++....+.    ..+.++..  ..+++..  .+.+++.+.++++|+++++ ..++++++|+++|+||+|+
T Consensus        10 ~~~~~~~kIl~~~~i~~~----~~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~p~Lk~I~   85 (416)
T 3k5p_A           10 SLSRDRINVLLLEGISQT----AVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAANRLIAVG   85 (416)
T ss_dssp             --CGGGSCEEECSCCCHH----HHHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHCTTCCEEE
T ss_pred             CCCCCCcEEEEECCCCHH----HHHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhCCCcEEEE
Confidence            345567899999876543    23344432  2333322  2445677888999988765 4689999999999999999


Q ss_pred             EcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--CccccCCCeEEEE
Q 019081           82 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFIL  159 (346)
Q Consensus        82 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~--~~~~l~g~tvgIi  159 (346)
                      ++|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|...  .+.+|+|||||||
T Consensus        86 ~~~~G~d~IDl~~a~~~GI~V~n~p~~---n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGII  162 (416)
T 3k5p_A           86 CFSVGTNQVELKAARKRGIPVFNAPFS---NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIV  162 (416)
T ss_dssp             ECSSCCTTBCHHHHHHTTCCEECCSST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEE
T ss_pred             ECccccCccCHHHHHhcCcEEEeCCCc---ccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEE
Confidence            999999999999999999999999998   88999999999999999999999999999999753  4789999999999


Q ss_pred             ecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccc
Q 019081          160 GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT  239 (346)
Q Consensus       160 G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T  239 (346)
                      |+|.||+.+|+++++|||+|++||++.....                 ...   ....++++++++||+|++|+|+|++|
T Consensus       163 GlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~-----------------~~~---~~~~sl~ell~~aDvV~lhvPlt~~T  222 (416)
T 3k5p_A          163 GYGNIGSQVGNLAESLGMTVRYYDTSDKLQY-----------------GNV---KPAASLDELLKTSDVVSLHVPSSKST  222 (416)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECTTCCCCB-----------------TTB---EECSSHHHHHHHCSEEEECCCC----
T ss_pred             eeCHHHHHHHHHHHHCCCEEEEECCcchhcc-----------------cCc---EecCCHHHHHhhCCEEEEeCCCCHHH
Confidence            9999999999999999999999998643210                 000   02368999999999999999999999


Q ss_pred             cCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCC----CCCCCCCceEEccCCCCCc
Q 019081          240 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPN----DPILKFKNVLITPHVGGVT  315 (346)
Q Consensus       240 ~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~----~pL~~~~nviiTPH~a~~t  315 (346)
                      +++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++++    +|||++|||++|||+||+|
T Consensus       223 ~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T  302 (416)
T 3k5p_A          223 SKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGST  302 (416)
T ss_dssp             -CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCC
T ss_pred             hhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999775    7999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCC
Q 019081          316 EHSYRSMAKVVGDVALQLHAGTPLT  340 (346)
Q Consensus       316 ~~~~~~~~~~~~~ni~~~~~g~~~~  340 (346)
                      .++.+++...+++|+.+|++|..+.
T Consensus       303 ~ea~~~~~~~~~~nl~~~l~~g~~~  327 (416)
T 3k5p_A          303 EEAQERIGTEVTRKLVEYSDVGSTV  327 (416)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            9999999999999999999655444

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=7.1e-69  Score=518.15  Aligned_cols=293  Identities=29%  Similarity=0.452  Sum_probs=259.8

Q ss_pred             HHHHhcCCCeEEEcC-----CCCCcccccCcceEEEEeC---CCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcE
Q 019081           30 KEYLQNYPSIQVDVV-----PISDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIK  101 (346)
Q Consensus        30 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~i~~~---~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~  101 (346)
                      .++++.. ++++...     +.+++.+.++++|++++..   .++++++|+++|+||+|+++|+|+||||+++|+++||.
T Consensus        33 ~~~L~~~-g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~  111 (351)
T 3jtm_A           33 RDWLESQ-GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLT  111 (351)
T ss_dssp             HHHHHHT-TCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCE
T ss_pred             HHHHHHC-CCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCee
Confidence            4555543 5555432     2346778899999998753   46899999999999999999999999999999999999


Q ss_pred             EEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC----CCccccCCCeEEEEecCHHHHHHHHHHccCCC
Q 019081          102 VARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGV  177 (346)
Q Consensus       102 v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~  177 (346)
                      |+|+||+   |+.+||||++++||++.|++..+++.+++|.|..    ..+.+|+|+||||||+|.||+++|+++++|||
T Consensus       112 V~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~  188 (351)
T 3jtm_A          112 VAEVTGS---NVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC  188 (351)
T ss_dssp             EEECTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCC
T ss_pred             EEECCCc---CchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCC
Confidence            9999998   8899999999999999999999999999999973    24679999999999999999999999999999


Q ss_pred             EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCc
Q 019081          178 KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS  255 (346)
Q Consensus       178 ~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~ga  255 (346)
                      +|++||++.....                  .....+  ...++++++++||+|++|+|+|++|+++|+++.|+.||+|+
T Consensus       189 ~V~~~dr~~~~~~------------------~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga  250 (351)
T 3jtm_A          189 NLLYHDRLQMAPE------------------LEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGV  250 (351)
T ss_dssp             EEEEECSSCCCHH------------------HHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTE
T ss_pred             EEEEeCCCccCHH------------------HHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCC
Confidence            9999998753311                  011111  13589999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 019081          256 LLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHA  335 (346)
Q Consensus       256 ilIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~  335 (346)
                      +|||+|||++||++||++||++|+|+||+||||++||+|++||||++|||++|||+||+|.++..++.+.+++|+.+|++
T Consensus       251 ilIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~  330 (351)
T 3jtm_A          251 LIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFK  330 (351)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccc
Q 019081          336 GTPLTGLEF  344 (346)
Q Consensus       336 g~~~~~~~~  344 (346)
                      |++....|+
T Consensus       331 g~~~~~~~~  339 (351)
T 3jtm_A          331 GEDFPTENY  339 (351)
T ss_dssp             TCCCCGGGE
T ss_pred             CCCCCCceE
Confidence            997443333

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=1e-68  Score=517.46  Aligned_cols=303  Identities=24%  Similarity=0.310  Sum_probs=262.8

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCC-----CCCcccccCcceEEEEe--CCCCCHHHHhcCCCCeEEEEcCc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP-----ISDVPDVIANYHLCVVK--TMRLDSNCISRANQMKLIMQFGV   85 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~i~~--~~~~~~~~l~~~~~Lk~I~~~~~   85 (346)
                      |||++++........+ .. .+...++++..++     .+++.+.++++|+++++  ..++++++++++|+||+|+++|+
T Consensus         3 mki~~~d~~~~~~~~~-~~-~~~l~~~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~   80 (352)
T 3gg9_A            3 LKIAVLDDYQDAVRKL-DC-FSLLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGR   80 (352)
T ss_dssp             CEEEECCCTTCCGGGS-GG-GGGGTTSEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTCTTCCEEEESSC
T ss_pred             eEEEEEcCccccchhh-hh-hhhhcCceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCc
Confidence            6999988765432111 11 1122334544332     24567888999999883  47899999999999999999999


Q ss_pred             cC----CccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC------------Ccc
Q 019081           86 GL----EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------------TGE  149 (346)
Q Consensus        86 G~----d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~------------~~~  149 (346)
                      |+    |+||+++|+++||.|+|+||+ +   .+||||++++||++.|++..+++.+++|.|...            .+.
T Consensus        81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~---~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~  156 (352)
T 3gg9_A           81 VSRDAGGHIDLEACTDKGVVVLEGKGS-P---VAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGR  156 (352)
T ss_dssp             CCCSSSCSBCHHHHHHHTCEEECCCCC-S---HHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBC
T ss_pred             ccCCccCcccHHHHHhCCeEEEECCCC-c---HHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCc
Confidence            99    999999999999999999997 4   799999999999999999999999999999752            478


Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  228 (346)
                      +|+|+||||||+|.||+++|+++++|||+|++||++....  .                ...... ...++++++++||+
T Consensus       157 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~----------------~~~~g~~~~~~l~ell~~aDi  218 (352)
T 3gg9_A          157 VLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKE--R----------------ARADGFAVAESKDALFEQSDV  218 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHH--H----------------HHHTTCEECSSHHHHHHHCSE
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHH--H----------------HHhcCceEeCCHHHHHhhCCE
Confidence            9999999999999999999999999999999999864221  0                000001 12489999999999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEc
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT  308 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiT  308 (346)
                      |++|+|+|++|+++|+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||+|+++|||++|||++|
T Consensus       219 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilT  298 (352)
T 3gg9_A          219 LSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICT  298 (352)
T ss_dssp             EEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEEC
T ss_pred             EEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 019081          309 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPL  339 (346)
Q Consensus       309 PH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~  339 (346)
                      ||+|++|.++++++.+.+++|+.+|++|+|+
T Consensus       299 PHia~~t~e~~~~~~~~~~~ni~~~~~G~p~  329 (352)
T 3gg9_A          299 PHIGYVERESYEMYFGIAFQNILDILQGNVD  329 (352)
T ss_dssp             CSCTTCBHHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999875

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=5.3e-68  Score=513.58  Aligned_cols=273  Identities=18%  Similarity=0.312  Sum_probs=242.6

Q ss_pred             CCccc-ccCcceEEEEeCCCCCHHHHhcCCCCeEEEEc-CccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHH
Q 019081           47 SDVPD-VIANYHLCVVKTMRLDSNCISRANQMKLIMQF-GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM  124 (346)
Q Consensus        47 ~~~~~-~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~-~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~  124 (346)
                      +++.+ .+.++++++ +..++++++|+++|+||+|++. |+|+|+||+++|+++||.|+|+||+   |+.+||||++++|
T Consensus        67 ~e~~~~~~~~~~~i~-~~~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~---~~~~vAE~~l~l~  142 (365)
T 4hy3_A           67 AGLGDDILGRARYII-GQPPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRGIHVVTTGQV---FAEPVAEIGLGFA  142 (365)
T ss_dssp             GGSCTTHHHHEEEEE-ECCCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSCCEEEECGGG---GHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCeEEEE-eCCCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCCeEEEeCCCc---cchHHHHHHHHHH
Confidence            44433 346677766 4568999999999999999975 8999999999999999999999998   8899999999999


Q ss_pred             HHHHHhHHHHHHHHHhcc--cCC---CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchh
Q 019081          125 LGLLRKQNEMRMAIEQKK--LGV---PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  199 (346)
Q Consensus       125 l~~~R~~~~~~~~~~~~~--~~~---~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~  199 (346)
                      |++.|++..+++.+++|+  |..   ..+.+|+||||||||+|.||+++|+++++|||+|++||++....          
T Consensus       143 L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~----------  212 (365)
T 4hy3_A          143 LALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRS----------  212 (365)
T ss_dssp             HHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHH----------
T ss_pred             HHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHH----------
Confidence            999999999999999998  432   35789999999999999999999999999999999999874321          


Q ss_pred             hhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC
Q 019081          200 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH  279 (346)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~  279 (346)
                              ..........++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+
T Consensus       213 --------~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~  284 (365)
T 4hy3_A          213 --------MLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGH  284 (365)
T ss_dssp             --------HHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTS
T ss_pred             --------HHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCC
Confidence                    000111124689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          280 LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       280 i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      |+ |+||||++||+|+++|||++|||++|||+||+|.+++.+|.+.+++|+.+|++|+++.+.
T Consensus       285 i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~~~~~  346 (365)
T 4hy3_A          285 IV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLPPMRC  346 (365)
T ss_dssp             SE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCCCCSS
T ss_pred             ce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence            98 899999999999999999999999999999999999999999999999999999998753

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=9e-68  Score=508.34  Aligned_cols=307  Identities=20%  Similarity=0.308  Sum_probs=266.4

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCC---CCCcccccCcceEEEEe-CCCCCHHHHhcCCC--CeEEEEcCc
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGV   85 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~--Lk~I~~~~~   85 (346)
                      ||||+++... +....+.+.+.+.+|++++...+   .+++.+.++++|+++++ ..++++++|+++|+  ||||+++|+
T Consensus         1 mmkil~~~~~-~~~~~~~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   79 (333)
T 1j4a_A            1 MTKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV   79 (333)
T ss_dssp             -CEEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             CcEEEEEecC-ccCHHHHHHHHhhCCCcEEEECCCCCcHHHHHHhcCCcEEEEcCCCCCCHHHHHhccccCCeEEEECCc
Confidence            3688887543 22233334444456676665332   35667788999999886 46899999999987  999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccC--CCCccccCCCeEEEEecCH
Q 019081           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTGETLLGKTVFILGFGN  163 (346)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~--~~~~~~l~g~tvgIiG~G~  163 (346)
                      |+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|.  ...+.+++|+||||||+|.
T Consensus        80 G~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~  156 (333)
T 1j4a_A           80 GVDNIDMAKAKELGFQITNVPVY---SPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGH  156 (333)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSH
T ss_pred             ccccccHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCH
Confidence            99999999999999999999998   789999999999999999999999999999984  3457899999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCc-CCHHHHhhcCCEEEEeecCCccccCC
Q 019081          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFEFASKADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~~aDiV~~~lPlt~~T~~l  242 (346)
                      ||+++|+++++|||+|++||++.... .               ...    ... .++++++++||+|++|+|++++|+++
T Consensus       157 IG~~~A~~l~~~G~~V~~~d~~~~~~-~---------------~~~----~~~~~~l~ell~~aDvV~l~~p~~~~t~~l  216 (333)
T 1j4a_A          157 IGQVFMQIMEGFGAKVITYDIFRNPE-L---------------EKK----GYYVDSLDDLYKQADVISLHVPDVPANVHM  216 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCHH-H---------------HHT----TCBCSCHHHHHHHCSEEEECSCCCGGGTTC
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchh-H---------------Hhh----CeecCCHHHHHhhCCEEEEcCCCcHHHHHH
Confidence            99999999999999999999875431 0               011    122 37999999999999999999999999


Q ss_pred             CCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCC--CCCCC-----------CCCCCCceEEcc
Q 019081          243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP--FDPND-----------PILKFKNVLITP  309 (346)
Q Consensus       243 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP--l~~~~-----------pL~~~~nviiTP  309 (346)
                      ++++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||  +|++|           |||++|||++||
T Consensus       217 i~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTP  296 (333)
T 1j4a_A          217 INDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTP  296 (333)
T ss_dssp             BSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECS
T ss_pred             HhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECC
Confidence            99999999999999999999999999999999999999999999999999  45554           599999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          310 HVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       310 H~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      |+|++|.++..++.+.+++|+.+|++|+++.|.
T Consensus       297 Hia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  329 (333)
T 1j4a_A          297 KTAFYTTHAVRNMVVKAFDNNLELVEGKEAETP  329 (333)
T ss_dssp             SCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSB
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            999999999999999999999999999988764

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=9.1e-68  Score=519.44  Aligned_cols=304  Identities=26%  Similarity=0.343  Sum_probs=256.2

Q ss_pred             CcceEEEeCCCCCCChhHHHHHHhcCC--CeEEEc--CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCc
Q 019081           11 NITRVLFCGPHFPASHNYTKEYLQNYP--SIQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGV   85 (346)
Q Consensus        11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~   85 (346)
                      .||||+++.+..+.    ..+.++...  .+.+..  .+.+++.+.++++|+++++ ..++++++|+++|+||+|+++|+
T Consensus         3 ~~~kil~~~~~~~~----~~~~l~~~~~~~v~~~~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~   78 (404)
T 1sc6_A            3 DKIKFLLVEGVHQK----ALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAI   78 (404)
T ss_dssp             SSCCEEECSCCCHH----HHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSS
T ss_pred             CceEEEEeCCCCHH----HHHHHHhCCCcEEEEcCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCcEEEECCc
Confidence            45799998764321    223443321  233322  2445677788999998775 46899999999999999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCH
Q 019081           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGN  163 (346)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~  163 (346)
                      |+||||+++|+++||.|+|+||+   |+.+||||++++||++.|+++.+++.+++|+|..  ..+.+|+|||+||||+|+
T Consensus        79 G~d~iD~~~a~~~GI~V~n~p~~---n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~  155 (404)
T 1sc6_A           79 GTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGH  155 (404)
T ss_dssp             CCTTBCHHHHHHTTCCEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSH
T ss_pred             ccCccCHHHHHhCCCEEEecCcc---cHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECH
Confidence            99999999999999999999998   8899999999999999999999999999999964  347899999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCC
Q 019081          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV  243 (346)
Q Consensus       164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li  243 (346)
                      ||+.+|+++++|||+|++||++....                 .....   ...++++++++||+|++|+|+|++|+++|
T Consensus       156 IG~~vA~~l~~~G~~V~~~d~~~~~~-----------------~~~~~---~~~~l~ell~~aDvV~l~~P~t~~t~~li  215 (404)
T 1sc6_A          156 IGTQLGILAESLGMYVYFYDIENKLP-----------------LGNAT---QVQHLSDLLNMSDVVSLHVPENPSTKNMM  215 (404)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCCC-----------------CTTCE---ECSCHHHHHHHCSEEEECCCSSTTTTTCB
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCchhc-----------------cCCce---ecCCHHHHHhcCCEEEEccCCChHHHHHh
Confidence            99999999999999999999864321                 00011   12489999999999999999999999999


Q ss_pred             CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCC----CCCCCCCCceEEccCCCCCcHHHH
Q 019081          244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP----NDPILKFKNVLITPHVGGVTEHSY  319 (346)
Q Consensus       244 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~----~~pL~~~~nviiTPH~a~~t~~~~  319 (346)
                      +++.|++||+|++|||+|||+++|+++|++||++|+|+||+||||++||++.    ++|||++|||++|||+|++|.++.
T Consensus       216 ~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~  295 (404)
T 1sc6_A          216 GAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ  295 (404)
T ss_dssp             CHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHH
T ss_pred             hHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHH
Confidence            9999999999999999999999999999999999999999999999999874    579999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCC
Q 019081          320 RSMAKVVGDVALQLHAGTPLTG  341 (346)
Q Consensus       320 ~~~~~~~~~ni~~~~~g~~~~~  341 (346)
                      +++...+++|+.+|++|+++.|
T Consensus       296 ~~~~~~~~~nl~~~l~g~~~~~  317 (404)
T 1sc6_A          296 ENIGLEVAGKLIKYSDNGSTLS  317 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHHHHHHHHHHcCCCCcc
Confidence            9999999999999999877654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.2e-67  Score=503.58  Aligned_cols=305  Identities=21%  Similarity=0.288  Sum_probs=262.8

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcC---CCCCcccccCcceEEEEe-CCCCCHHHHhcCCC--CeEEEEcCcc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVG   86 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~--Lk~I~~~~~G   86 (346)
                      |||+++... +....+.+.+.+.+ ++++...   ..+++.+.++++|+++++ ..++++++++++|+  ||||+++|+|
T Consensus         1 Mkil~~~~~-~~~~~~~~~l~~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G   78 (333)
T 1dxy_A            1 MKIIAYGAR-VDEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (333)
T ss_dssp             CEEEECSCC-TTTHHHHHHHHHHH-CCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEecc-ccCHHHHHHHHHhC-CeEEEEcCCCChHHHHHHhcCCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcc
Confidence            478887533 22233334443333 4444332   235667778999999886 46899999999988  9999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccC---CCCccccCCCeEEEEecCH
Q 019081           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG---VPTGETLLGKTVFILGFGN  163 (346)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~---~~~~~~l~g~tvgIiG~G~  163 (346)
                      +|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|.   ...+.+|.|+||||||+|.
T Consensus        79 ~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~  155 (333)
T 1dxy_A           79 TDNIDMTAMKQYGIRLSNVPAY---SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGH  155 (333)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSH
T ss_pred             cCccCHHHHHhCCCEEEeCCCC---CchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCH
Confidence            9999999999999999999998   789999999999999999999999999999873   3467899999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCC
Q 019081          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV  243 (346)
Q Consensus       164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li  243 (346)
                      ||+.+|+++++|||+|++||++.... .               ...    ....++++++++||+|++|+|++++|+++|
T Consensus       156 IG~~~A~~l~~~G~~V~~~d~~~~~~-~---------------~~~----~~~~~l~ell~~aDvV~~~~P~~~~t~~li  215 (333)
T 1dxy_A          156 IGQVAIKLFKGFGAKVIAYDPYPMKG-D---------------HPD----FDYVSLEDLFKQSDVIDLHVPGIEQNTHII  215 (333)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCSS-C---------------CTT----CEECCHHHHHHHCSEEEECCCCCGGGTTSB
T ss_pred             HHHHHHHHHHHCCCEEEEECCCcchh-h---------------Hhc----cccCCHHHHHhcCCEEEEcCCCchhHHHHh
Confidence            99999999999999999999876431 0               011    123489999999999999999999999999


Q ss_pred             CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCC--C--------CC---CCCCCCCceEEccC
Q 019081          244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF--D--------PN---DPILKFKNVLITPH  310 (346)
Q Consensus       244 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl--~--------~~---~pL~~~~nviiTPH  310 (346)
                      +++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||+  +        ++   +|||++|||++|||
T Consensus       216 ~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPH  295 (333)
T 1dxy_A          216 NEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPH  295 (333)
T ss_dssp             CHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSS
T ss_pred             CHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCc
Confidence            99999999999999999999999999999999999999999999999993  2        12   58999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          311 VGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       311 ~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      +|++|.++..++.+.+++|+.+|++|+++.|.
T Consensus       296 ia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~  327 (333)
T 1dxy_A          296 IAYYTETAVHNMVYFSLQHLVDFLTKGETSTE  327 (333)
T ss_dssp             CTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTE
T ss_pred             cccChHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence            99999999999999999999999999988763

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-67  Score=505.68  Aligned_cols=307  Identities=28%  Similarity=0.427  Sum_probs=258.6

Q ss_pred             CCCCcceEEEeCCCCCCChhHHHHHHhcCCCeEEEc---CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEc
Q 019081            8 SDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQF   83 (346)
Q Consensus         8 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~   83 (346)
                      +.++|+||+++.+..+    ...+.++.. ++++..   .+.+++.+.++++|+++++ ..++++++++++|+||||+++
T Consensus        22 ~~~~~~~vli~~~~~~----~~~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~   96 (335)
T 2g76_A           22 SMANLRKVLISDSLDP----CCRKILQDG-GLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRA   96 (335)
T ss_dssp             ----CCEEEECSCCCH----HHHHHHHHH-TCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCSSCCEEEES
T ss_pred             hhccceEEEEcCCCCH----HHHHHHHhC-CCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhCCCCcEEEEC
Confidence            3456778988765432    223334332 344432   2345667788999999886 457999999999999999999


Q ss_pred             CccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--CccccCCCeEEEEec
Q 019081           84 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGF  161 (346)
Q Consensus        84 ~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~--~~~~l~g~tvgIiG~  161 (346)
                      |+|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|...  .+.+|+|+||||||+
T Consensus        97 ~~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGl  173 (335)
T 2g76_A           97 GTGVDNVDLEAATRKGILVMNTPNG---NSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGL  173 (335)
T ss_dssp             SSSCTTBCHHHHHHHTCEEECCSST---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECC
T ss_pred             CCCcchhChHHHHhCCeEEEECCCc---cchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeE
Confidence            9999999999999999999999998   88999999999999999999999999999999642  468999999999999


Q ss_pred             CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCcccc
Q 019081          162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTA  240 (346)
Q Consensus       162 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T~  240 (346)
                      |.||+.+|+++++|||+|++||++.... .                  ....+ ...++++++++||+|++|+|++++|+
T Consensus       174 G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~------------------~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~  234 (335)
T 2g76_A          174 GRIGREVATRMQSFGMKTIGYDPIISPE-V------------------SASFGVQQLPLEEIWPLCDFITVHTPLLPSTT  234 (335)
T ss_dssp             SHHHHHHHHHHHTTTCEEEEECSSSCHH-H------------------HHHTTCEECCHHHHGGGCSEEEECCCCCTTTT
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCcchh-h------------------hhhcCceeCCHHHHHhcCCEEEEecCCCHHHH
Confidence            9999999999999999999999875431 0                  00111 23589999999999999999999999


Q ss_pred             CCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHH
Q 019081          241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYR  320 (346)
Q Consensus       241 ~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~  320 (346)
                      ++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++|| ++++|||++|||++|||+|++|.++..
T Consensus       235 ~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP-~~~~~L~~~~nvilTPH~~~~t~e~~~  313 (335)
T 2g76_A          235 GLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQS  313 (335)
T ss_dssp             TSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS-CSCCHHHHSTTEEECSSCTTCBHHHHH
T ss_pred             HhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCC-CCCchHHhCCCEEECCcCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 578999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCc
Q 019081          321 SMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       321 ~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      ++.+.+++|+.+|++|+++.|+
T Consensus       314 ~~~~~~~~nl~~~~~g~~~~n~  335 (335)
T 2g76_A          314 RCGEEIAVQFVDMVKGKSLTGV  335 (335)
T ss_dssp             HHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999999998763

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=1.2e-66  Score=500.14  Aligned_cols=305  Identities=23%  Similarity=0.344  Sum_probs=263.3

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcC----CCCCcccccCcceEEEEe-CCCCCHHHHhcCCC--CeEEEEcCc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGV   85 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~--Lk~I~~~~~   85 (346)
                      |||+++... +....+.+.+.+.+ ++++...    +.+++.+.++++|+++++ ..++++++++++|+  ||||+++|+
T Consensus         1 mki~~~~~~-~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~   78 (331)
T 1xdw_A            1 MKVLCYGVR-DVELPIFEACNKEF-GYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTA   78 (331)
T ss_dssp             CEEEECSCC-TTTHHHHHHHGGGT-CCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSS
T ss_pred             CEEEEEecC-ccCHHHHHHHHHhc-CeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhCcccCceEEEEccc
Confidence            478887543 22233333343333 5555432    224566778999999886 46899999999998  999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC---CCccccCCCeEEEEecC
Q 019081           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFG  162 (346)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~---~~~~~l~g~tvgIiG~G  162 (346)
                      |+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..   ..+.++.|+||||||+|
T Consensus        79 G~d~id~~~~~~~gI~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G  155 (331)
T 1xdw_A           79 GTDHIDKEYAKELGFPMAFVPRY---SPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLG  155 (331)
T ss_dssp             CCTTBCHHHHHHTTCCEECCCCC---CHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCS
T ss_pred             cccccCHHHHHhCCcEEEeCCCC---CcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcC
Confidence            99999999999999999999998   7899999999999999999999999999999853   35789999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       163 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~l  242 (346)
                      .||+.+|+++++|||+|++||++.... .               ...    ....++++++++||+|++|+|++++|+++
T Consensus       156 ~IG~~~A~~l~~~G~~V~~~d~~~~~~-~---------------~~~----~~~~~l~ell~~aDvV~~~~p~t~~t~~l  215 (331)
T 1xdw_A          156 RIGRVAAQIFHGMGATVIGEDVFEIKG-I---------------EDY----CTQVSLDEVLEKSDIITIHAPYIKENGAV  215 (331)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCCS-C---------------TTT----CEECCHHHHHHHCSEEEECCCCCTTTCCS
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCccHH-H---------------Hhc----cccCCHHHHHhhCCEEEEecCCchHHHHH
Confidence            999999999999999999999876431 0               011    12358999999999999999999999999


Q ss_pred             CCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCC--CCC-------C----CCCCC-CceEEc
Q 019081          243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF--DPN-------D----PILKF-KNVLIT  308 (346)
Q Consensus       243 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl--~~~-------~----pL~~~-~nviiT  308 (346)
                      |+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||+  |++       +    |||++ |||++|
T Consensus       216 i~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilT  295 (331)
T 1xdw_A          216 VTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLIT  295 (331)
T ss_dssp             BCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEEC
T ss_pred             hCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEc
Confidence            999999999999999999999999999999999999999999999999994  333       3    79999 999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          309 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       309 PH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      ||+|++|.++..++.+.+++|+.+|++|+++.|.
T Consensus       296 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~  329 (331)
T 1xdw_A          296 PHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNK  329 (331)
T ss_dssp             CSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTB
T ss_pred             CccccChHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999999999999999999988754

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=4.7e-66  Score=504.41  Aligned_cols=275  Identities=25%  Similarity=0.352  Sum_probs=251.7

Q ss_pred             CCcccccCcceEEEEe---CCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHH
Q 019081           47 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL  123 (346)
Q Consensus        47 ~~~~~~~~~~d~~i~~---~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~  123 (346)
                      +++.+.+.++|++++.   ..++++++|+++|+||||++.|+|+|+||+++|+++||.|+|+||+   |+.+||||++++
T Consensus        81 ~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~---~~~~VAE~al~l  157 (393)
T 2nac_A           81 SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYC---NSISVAEHVVMM  157 (393)
T ss_dssp             SHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT---THHHHHHHHHHH
T ss_pred             HHHHHhccCCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCc---ccHHHHHHHHHH
Confidence            3567788999998875   3479999999999999999999999999999999999999999998   889999999999


Q ss_pred             HHHHHHhHHHHHHHHHhcccCC----CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchh
Q 019081          124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  199 (346)
Q Consensus       124 ~l~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~  199 (346)
                      ||++.|++..+++.+++|.|..    ..+.+|+|+||||||+|.||+++|+++++|||+|++||++.....         
T Consensus       158 iL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~---------  228 (393)
T 2nac_A          158 ILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES---------  228 (393)
T ss_dssp             HHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH---------
T ss_pred             HHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchh---------
Confidence            9999999999999999999963    246789999999999999999999999999999999998754311         


Q ss_pred             hhccccccccccccC--CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          200 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       200 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                               .....+  ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++
T Consensus       229 ---------~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~  299 (393)
T 2nac_A          229 ---------VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES  299 (393)
T ss_dssp             ---------HHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred             ---------hHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHc
Confidence                     001111  125799999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          278 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       278 g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      |+|+||+||||++||++++||||++|||++|||+|++|.++..++.+.+++|+.+|++|+++.|.
T Consensus       300 g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~  364 (393)
T 2nac_A          300 GRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDE  364 (393)
T ss_dssp             TSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGG
T ss_pred             CCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCcce
Confidence            99999999999999999999999999999999999999999999999999999999999998874

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=6.8e-66  Score=490.10  Aligned_cols=298  Identities=28%  Similarity=0.436  Sum_probs=261.4

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEEc---CCCCCcccccCcceEEEEeCC-CCCHHHHhcCCCCeEEEEcCccC
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGL   87 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~~~-~~~~~~l~~~~~Lk~I~~~~~G~   87 (346)
                      +|||+++.+..   ... .+.++.. ++++..   .+.+++.+.+.++|+++++.. ++++++++++|+||||+++|+|+
T Consensus         3 ~~~il~~~~~~---~~~-~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   77 (307)
T 1wwk_A            3 RMKVLVAAPLH---EKA-IQVLKDA-GLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGL   77 (307)
T ss_dssp             -CEEEECSCCC---HHH-HHHHHHT-TCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCC
T ss_pred             ceEEEEeCCCC---HHH-HHHHHhC-CeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCeEEEECCccc
Confidence            46899887542   222 2334432 455532   233456677899999988644 69999999999999999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCHHH
Q 019081           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIG  165 (346)
Q Consensus        88 d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~IG  165 (346)
                      |+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..  ..+.+|.|+||||||+|.||
T Consensus        78 d~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG  154 (307)
T 1wwk_A           78 DNIDVEAAKEKGIEVVNAPAA---SSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIG  154 (307)
T ss_dssp             TTBCHHHHHHHTCEEECCGGG---GHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHH
T ss_pred             cccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHH
Confidence            999999999999999999998   8899999999999999999999999999999974  45789999999999999999


Q ss_pred             HHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCccccCCCC
Q 019081          166 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVN  244 (346)
Q Consensus       166 ~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T~~li~  244 (346)
                      +++|+++++|||+|++||++.... .                  ....+ ...++++++++||+|++|+|++++|+++++
T Consensus       155 ~~~A~~l~~~G~~V~~~d~~~~~~-~------------------~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~  215 (307)
T 1wwk_A          155 YQVAKIANALGMNILLYDPYPNEE-R------------------AKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLIN  215 (307)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHH-H------------------HHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             HHHHHHHHHCCCEEEEECCCCChh-h------------------HhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcC
Confidence            999999999999999999876431 0                  00111 234899999999999999999999999999


Q ss_pred             HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHH
Q 019081          245 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAK  324 (346)
Q Consensus       245 ~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~  324 (346)
                      ++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+++++|||++||+++|||++++|.++..++.+
T Consensus       216 ~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~  295 (307)
T 1wwk_A          216 EERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGV  295 (307)
T ss_dssp             HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHH
T ss_pred             HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 019081          325 VVGDVALQLHAG  336 (346)
Q Consensus       325 ~~~~ni~~~~~g  336 (346)
                      .+++|+.+|++|
T Consensus       296 ~~~~nl~~~~~g  307 (307)
T 1wwk_A          296 EVAEKVVKILKG  307 (307)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcC
Confidence            999999999976

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=1.9e-66  Score=504.25  Aligned_cols=270  Identities=29%  Similarity=0.419  Sum_probs=247.6

Q ss_pred             CCcccccCcceEEEEeC---CCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhC--CcEEEecCCCCCCChhhHHHHHH
Q 019081           47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRC--GIKVARIPGDVTGNAASCAELTI  121 (346)
Q Consensus        47 ~~~~~~~~~~d~~i~~~---~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~--gI~v~n~p~~~~~na~~vAE~~~  121 (346)
                      +++.+.++++|++++..   .++++++|+++|+||||+++|+|+|+||+++|+++  ||.|+|+||+   |+.+||||++
T Consensus        52 ~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~---~~~~vAE~~~  128 (364)
T 2j6i_A           52 SVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGS---NVVSVAEHVV  128 (364)
T ss_dssp             SHHHHHGGGCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTS---SHHHHHHHHH
T ss_pred             HHHHHHhhCCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHhcCCCEEEEECCCc---CcHHHHHHHH
Confidence            55777889999988753   35899999999999999999999999999999999  9999999998   8899999999


Q ss_pred             HHHHHHHHhHHHHHHHHHhcccCC----CCccccCCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCcccccccccc
Q 019081          122 YLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQS  196 (346)
Q Consensus       122 ~~~l~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~~~~~~~  196 (346)
                      ++||++.|++..+++.+++|.|..    ..+.+|+|+||||||+|+||+++|+++++|||+ |++||++..+..      
T Consensus       129 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~------  202 (364)
T 2j6i_A          129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKD------  202 (364)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHH------
T ss_pred             HHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchh------
Confidence            999999999999999999999963    246899999999999999999999999999997 999998754311      


Q ss_pred             chhhhccccccccccccC--CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHH
Q 019081          197 SALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHY  274 (346)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~a  274 (346)
                                  .....+  ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|++|
T Consensus       203 ------------~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~a  270 (364)
T 2j6i_A          203 ------------AEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAA  270 (364)
T ss_dssp             ------------HHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHH
T ss_pred             ------------HHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHH
Confidence                        001111  124899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEEEecCCCCCCCCCCCCCCC--C---ceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 019081          275 LECGHLGGLGIDVAWTEPFDPNDPILKF--K---NVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT  337 (346)
Q Consensus       275 L~~g~i~ga~lDV~~~EPl~~~~pL~~~--~---nviiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~  337 (346)
                      |++|+|+||+||||++||+|++||||.+  |   ||++|||+|++|.++..++.+.+++|+.+|++|+
T Consensus       271 L~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~  338 (364)
T 2j6i_A          271 LESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGK  338 (364)
T ss_dssp             HHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999  9   9999999999999999999999999999999998

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=6.9e-65  Score=483.89  Aligned_cols=299  Identities=29%  Similarity=0.424  Sum_probs=263.2

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcC-CCeEEEcC---CCCCcccccCcceEEEEeC-CCCCHHHHhcCCCCeEEEEcCccC
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNY-PSIQVDVV---PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGL   87 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~   87 (346)
                      |||+++.+..++..    +.++.. .++++...   +.+++.+.++++|+++++. .++++++++++|+||||+++|+|+
T Consensus         1 ~~vl~~~~~~~~~~----~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~   76 (311)
T 2cuk_A            1 MRVLVTRTLPGKAL----DRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGV   76 (311)
T ss_dssp             CEEEESSCCSSSTT----HHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCC
T ss_pred             CEEEEeCCCCHHHH----HHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCc
Confidence            57888765433211    223332 12332221   2345667789999998764 589999999999999999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCccccCCCeEEEEecC
Q 019081           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGFG  162 (346)
Q Consensus        88 d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~-----~~~~~l~g~tvgIiG~G  162 (346)
                      |+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..     ..+.++.|+||||||+|
T Consensus        77 d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G  153 (311)
T 2cuk_A           77 DHVDLEAARERGIRVTHTPGV---LTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMG  153 (311)
T ss_dssp             TTBCHHHHHTTTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             cccCHHHHHhCCcEEEECCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEEC
Confidence            999999999999999999998   8899999999999999999999999999999963     24679999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       163 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~l  242 (346)
                      .||+.+|+++++|||+|++||++....                  .     ....++++++++||+|++|+|++++|+++
T Consensus       154 ~IG~~~A~~l~~~G~~V~~~d~~~~~~------------------~-----~~~~~l~ell~~aDvV~l~~p~~~~t~~l  210 (311)
T 2cuk_A          154 RIGQAVAKRALAFGMRVVYHARTPKPL------------------P-----YPFLSLEELLKEADVVSLHTPLTPETHRL  210 (311)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCSS------------------S-----SCBCCHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCccc------------------c-----cccCCHHHHHhhCCEEEEeCCCChHHHhh
Confidence            999999999999999999999876431                  1     12358999999999999999999999999


Q ss_pred             CCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHH
Q 019081          243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       243 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~  322 (346)
                      ++++.|+.||+|++|||+|||+++|+++|+++|+ |+|+||+||||++||+++++|||++||+++|||++++|.++..++
T Consensus       211 i~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~  289 (311)
T 2cuk_A          211 LNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERM  289 (311)
T ss_dssp             BCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHH
T ss_pred             cCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHH
Confidence            9999999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCc
Q 019081          323 AKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       323 ~~~~~~ni~~~~~g~~~~~~  342 (346)
                      .+.+++|+.+|++|+++.|.
T Consensus       290 ~~~~~~nl~~~~~g~~~~~~  309 (311)
T 2cuk_A          290 AEVAVENLLAVLEGREPPNP  309 (311)
T ss_dssp             HHHHHHHHHHHHTTCCCSSB
T ss_pred             HHHHHHHHHHHHcCCCCCCc
Confidence            99999999999999998875

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.6e-64  Score=483.35  Aligned_cols=305  Identities=24%  Similarity=0.349  Sum_probs=263.1

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEEcC----CCCCcccccCcceEEEEeC-CCCCHHHHhcCCC-CeEEEEcCc
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVKT-MRLDSNCISRANQ-MKLIMQFGV   85 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~-Lk~I~~~~~   85 (346)
                      |+||+++.+. +  .. ..+.++...++++...    +.+++.+.++++|+++++. .++++++++++|+ ||||+++|+
T Consensus         1 m~~vl~~~~~-~--~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~   76 (320)
T 1gdh_A            1 KKKILITWPL-P--EA-AMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (320)
T ss_dssp             CCEEEESSCC-C--HH-HHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CcEEEEcCCC-C--HH-HHHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCCccceEEEECCc
Confidence            3688887643 2  22 2334444334444322    2345667789999998865 5899999999999 999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCccccCCCeEEEEe
Q 019081           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILG  160 (346)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~-----~~~~~l~g~tvgIiG  160 (346)
                      |+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..     ..+.++.|+||||||
T Consensus        77 G~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG  153 (320)
T 1gdh_A           77 GFDHIDLDACKARGIKVGNAPHG---VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYG  153 (320)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEEC
T ss_pred             ccccccHHHHHhCCcEEEEcCCC---CHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEEC
Confidence            99999999999999999999998   8899999999999999999999999999999962     246899999999999


Q ss_pred             cCHHHHHHHHHHccCCCEEEEEcC-CCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccc
Q 019081          161 FGNIGVELAKRLRPFGVKIIATKR-SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT  239 (346)
Q Consensus       161 ~G~IG~~vA~~l~~~G~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T  239 (346)
                      +|.||+++|+++++|||+|++||+ +.... ...             .....   ...++++++++||+|++|+|++++|
T Consensus       154 ~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~-------------~~g~~---~~~~l~ell~~aDvVil~~p~~~~t  216 (320)
T 1gdh_A          154 FGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEA-------------SYQAT---FHDSLDSLLSVSQFFSLNAPSTPET  216 (320)
T ss_dssp             CSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHH-------------HHTCE---ECSSHHHHHHHCSEEEECCCCCTTT
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhh-------------hcCcE---EcCCHHHHHhhCCEEEEeccCchHH
Confidence            999999999999999999999998 65431 000             00010   1237999999999999999999999


Q ss_pred             cCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHH
Q 019081          240 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSY  319 (346)
Q Consensus       240 ~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~  319 (346)
                      +++++++.|+.||+|++|||+|||+++|+++|.++|++|+|+||+||||++|| ++++|||++|||++|||++++|.++.
T Consensus       217 ~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nviltPH~~~~t~~~~  295 (320)
T 1gdh_A          217 RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAR  295 (320)
T ss_dssp             TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSSCTTCBHHHH
T ss_pred             HhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEECCcCCcCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999 88999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCc
Q 019081          320 RSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       320 ~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      .++.+.+ +|+.+|++|+++...
T Consensus       296 ~~~~~~~-~nl~~~~~g~~~~~~  317 (320)
T 1gdh_A          296 EDMAHQA-NDLIDALFGGADMSY  317 (320)
T ss_dssp             HHHHHHH-HHHHHHHHTTSCCTT
T ss_pred             HHHHHHH-HHHHHHHcCCCCccc
Confidence            9999999 999999999988654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=6.3e-65  Score=484.67  Aligned_cols=299  Identities=25%  Similarity=0.415  Sum_probs=262.8

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEc---CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCccCC
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d   88 (346)
                      |||+++.+. +  ... .+.++.. ++++..   .+.+++.+.++++|+++++ ..++++++++++|+||||++.|+|+|
T Consensus         6 mkil~~~~~-~--~~~-~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d   80 (313)
T 2ekl_A            6 VKALITDPI-D--EIL-IKTLREK-GIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLD   80 (313)
T ss_dssp             CEEEECSCC-C--HHH-HHHHHHT-TCEEEECTTCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCT
T ss_pred             eEEEEECCC-C--HHH-HHHHHhC-CcEEEeCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCC
Confidence            588887753 2  222 2334433 344432   2335566778999998875 56899999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHH
Q 019081           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVEL  168 (346)
Q Consensus        89 ~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~v  168 (346)
                      +||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|....+.++.|+||||||+|.||+++
T Consensus        81 ~id~~~~~~~gi~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~~  157 (313)
T 2ekl_A           81 NIDTEEAEKRNIKVVYAPGA---STDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKV  157 (313)
T ss_dssp             TBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHHH
T ss_pred             ccCHHHHHhCCeEEEeCCCC---CchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHHH
Confidence            99999999999999999998   889999999999999999999999999999997666789999999999999999999


Q ss_pred             HHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCccccCCCCHHH
Q 019081          169 AKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF  247 (346)
Q Consensus       169 A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~  247 (346)
                      |+++++|||+|++||++.... .                  ....+ ...++++++++||+|++|+|++++|+++++++.
T Consensus       158 A~~l~~~G~~V~~~d~~~~~~-~------------------~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~  218 (313)
T 2ekl_A          158 GIIANAMGMKVLAYDILDIRE-K------------------AEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQ  218 (313)
T ss_dssp             HHHHHHTTCEEEEECSSCCHH-H------------------HHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHH
T ss_pred             HHHHHHCCCEEEEECCCcchh-H------------------HHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHH
Confidence            999999999999999876431 0                  00111 124899999999999999999999999999999


Q ss_pred             HccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCC---CCCCCCceEEccCCCCCcHHHHHHHHH
Q 019081          248 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND---PILKFKNVLITPHVGGVTEHSYRSMAK  324 (346)
Q Consensus       248 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~---pL~~~~nviiTPH~a~~t~~~~~~~~~  324 (346)
                      |+.||+|++|||+|||+++|+++|.++|++|+|+||+||||++||++ ++   |||++|||++|||++++|.++.+++.+
T Consensus       219 l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~-~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~  297 (313)
T 2ekl_A          219 FELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPK-EEWELELLKHERVIVTTHIGAQTKEAQKRVAE  297 (313)
T ss_dssp             HHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCC-SHHHHHHHHSTTEEECCSCTTCSHHHHHHHHH
T ss_pred             HhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCC-CcccchHhhCCCEEECCccCcCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987 66   999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCC
Q 019081          325 VVGDVALQLHAGTPL  339 (346)
Q Consensus       325 ~~~~ni~~~~~g~~~  339 (346)
                      .+++|+.+|++|+++
T Consensus       298 ~~~~n~~~~~~g~~l  312 (313)
T 2ekl_A          298 MTTQNLLNAMKELGM  312 (313)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCC
Confidence            999999999999986

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=3.2e-63  Score=478.47  Aligned_cols=313  Identities=21%  Similarity=0.347  Sum_probs=262.7

Q ss_pred             CCCcceEEEeCCCCCCChhHHHHHHhcCCCeEEEc-CCCCCccccc-CcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCc
Q 019081            9 DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQMKLIMQFGV   85 (346)
Q Consensus         9 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~   85 (346)
                      .+..++|++.+..... .  ..+.++....+.... .+.+++.+.+ .++|+++++ ..++++++++++|+||||+++|+
T Consensus        18 ~~~kp~i~~l~~~~~~-~--~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~   94 (347)
T 1mx3_A           18 GSHMPLVALLDGRDCT-V--EMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGS   94 (347)
T ss_dssp             ---CCEEEESSCSCCT-T--THHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSS
T ss_pred             CCCCCEEEEEcCCcch-h--hHHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCCCEEEEccc
Confidence            3456788888753221 1  133444322222222 2345555553 677877664 56899999999999999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC---------CccccCCCeE
Q 019081           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTV  156 (346)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~---------~~~~l~g~tv  156 (346)
                      |||+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|...         .+.+++|+||
T Consensus        95 G~d~id~~~~~~~gI~V~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tv  171 (347)
T 1mx3_A           95 GFDNIDIKSAGDLGIAVCNVPAA---SVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETL  171 (347)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEE
T ss_pred             ccCcccHHHHHhCCceEEECCCC---CHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEE
Confidence            99999999999999999999998   78999999999999999999999999999999532         1268999999


Q ss_pred             EEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEEeec
Q 019081          157 FILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       157 gIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~lP  234 (346)
                      ||||+|+||+.+|+++++|||+|++||++..+..                   ....+  ...++++++++||+|++|+|
T Consensus       172 GIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-------------------~~~~g~~~~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          172 GIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-------------------ERALGLQRVSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             EEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-------------------HHHHTCEECSSHHHHHHHCSEEEECCC
T ss_pred             EEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-------------------HhhcCCeecCCHHHHHhcCCEEEEcCC
Confidence            9999999999999999999999999998754310                   00111  12479999999999999999


Q ss_pred             CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCC-CCCCCCCCCceEEccCCCC
Q 019081          235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-PNDPILKFKNVLITPHVGG  313 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-~~~pL~~~~nviiTPH~a~  313 (346)
                      ++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||+.||++ .++|||.+|||++|||+|+
T Consensus       233 ~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~  312 (347)
T 1mx3_A          233 LNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  312 (347)
T ss_dssp             CCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             CCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHH
Confidence            999999999999999999999999999999999999999999999999999999999987 4789999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCCCC-ccccC
Q 019081          314 VTEHSYRSMAKVVGDVALQLHAGTPLTG-LEFVN  346 (346)
Q Consensus       314 ~t~~~~~~~~~~~~~ni~~~~~g~~~~~-~~~~~  346 (346)
                      +|.++..+|.+.+++|+.+|++|+++.+ .+.||
T Consensus       313 ~t~~~~~~~~~~~~~ni~~~~~g~~~~~l~~~v~  346 (347)
T 1mx3_A          313 YSEQASIEMREEAAREIRRAITGRIPDSLKNCVN  346 (347)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSCTTTTCSSBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcccCCCCC
Confidence            9999999999999999999999998753 34565

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=2.6e-63  Score=476.77  Aligned_cols=308  Identities=26%  Similarity=0.358  Sum_probs=262.1

Q ss_pred             CCCCcceEEEeCCCCCCChhHHHHHHhcCCCeEEEcC--CCCC-cccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEc
Q 019081            8 SDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV--PISD-VPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQF   83 (346)
Q Consensus         8 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~   83 (346)
                      +.|++++|+++.+..   .... +.++....+.....  +.++ +.+.++++|+++++ ..++++++++++|+||||+++
T Consensus        19 ~~m~~~~vl~~~~~~---~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~   94 (333)
T 3ba1_A           19 SHMEAIGVLMMCPMS---TYLE-QELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEIVSSF   94 (333)
T ss_dssp             ---CCCEEEECSCCC---HHHH-HHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCEEEES
T ss_pred             ccCCCCEEEEeCCCC---HHHH-HHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhCCCCcEEEEc
Confidence            445556888876532   2222 23332112222111  1122 44557899998875 468999999999999999999


Q ss_pred             CccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC---CCccccCCCeEEEEe
Q 019081           84 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILG  160 (346)
Q Consensus        84 ~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~---~~~~~l~g~tvgIiG  160 (346)
                      |+|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..   ..+.+|+|++|||||
T Consensus        95 ~~G~d~id~~~~~~~gI~v~n~pg~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG  171 (333)
T 3ba1_A           95 SVGLDKVDLIKCEEKGVRVTNTPDV---LTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIG  171 (333)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEEC
T ss_pred             CccccccCHHHHHhCCcEEEECCCc---chHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEEC
Confidence            9999999999999999999999998   8899999999999999999999999999999953   246899999999999


Q ss_pred             cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCcccc
Q 019081          161 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA  240 (346)
Q Consensus       161 ~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~  240 (346)
                      +|.||+++|+++++|||+|++||++....                  ....   ...++++++++||+|++|+|++++|+
T Consensus       172 ~G~iG~~vA~~l~~~G~~V~~~dr~~~~~------------------~g~~---~~~~l~ell~~aDvVil~vP~~~~t~  230 (333)
T 3ba1_A          172 LGRIGLAVAERAEAFDCPISYFSRSKKPN------------------TNYT---YYGSVVELASNSDILVVACPLTPETT  230 (333)
T ss_dssp             CSHHHHHHHHHHHTTTCCEEEECSSCCTT------------------CCSE---EESCHHHHHHTCSEEEECSCCCGGGT
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCchhc------------------cCce---ecCCHHHHHhcCCEEEEecCCChHHH
Confidence            99999999999999999999999875431                  0000   13589999999999999999999999


Q ss_pred             CCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHH
Q 019081          241 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYR  320 (346)
Q Consensus       241 ~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~  320 (346)
                      ++++++.++.||+|++|||+|||.++|+++|+++|++|+++||+||||++||++. +|||++|||++|||+|++|.++..
T Consensus       231 ~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~-~~L~~~~nviltPH~~~~t~e~~~  309 (333)
T 3ba1_A          231 HIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLENVVLLPHVGSGTVETRK  309 (333)
T ss_dssp             TCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCC-GGGGGCTTEEECSSCTTCSHHHHH
T ss_pred             HHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCc-chhhcCCCEEECCcCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999865 999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCccccC
Q 019081          321 SMAKVVGDVALQLHAGTPLTGLEFVN  346 (346)
Q Consensus       321 ~~~~~~~~ni~~~~~g~~~~~~~~~~  346 (346)
                      ++.+.+++|+.+|++|+++.|.  ||
T Consensus       310 ~~~~~~~~nl~~~~~g~~~~~~--Vn  333 (333)
T 3ba1_A          310 VMADLVVGNLEAHFSGKPLLTP--VV  333 (333)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSSB--CC
T ss_pred             HHHHHHHHHHHHHHcCCCCCCC--CC
Confidence            9999999999999999998764  55

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=3.6e-63  Score=470.39  Aligned_cols=264  Identities=22%  Similarity=0.328  Sum_probs=242.2

Q ss_pred             cccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHh
Q 019081           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK  130 (346)
Q Consensus        51 ~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~  130 (346)
                      +.+.++|+++++.  .+.++++++|+||||+++|+|+|+||++++ ++||.|+|+||+   |+.+||||++++||++.|+
T Consensus        27 ~~~~~~d~~i~~~--~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~---~~~~vAE~~~~~~L~~~R~  100 (303)
T 1qp8_A           27 GDLGNVEAALVSR--ITAEELAKMPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGS---NADAVAEFALALLLAPYKR  100 (303)
T ss_dssp             SCCTTBCCCCBSC--CCHHHHHHCTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSS---SHHHHHHHHHHHHHHHHTT
T ss_pred             hhhCCCEEEEECC--CCHHHHhhCCCCcEEEECCcCcccccHHHH-hcCCEEEECCCC---CchHHHHHHHHHHHHHHhC
Confidence            4568899887653  567999999999999999999999999885 799999999998   8899999999999999999


Q ss_pred             HHHHHHHHHhcccCCC-CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccc
Q 019081          131 QNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL  209 (346)
Q Consensus       131 ~~~~~~~~~~~~~~~~-~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (346)
                      +..+++.+++|.|... ...++.|+||||||+|.||+++|+++++|||+|++|||+.. .                  . 
T Consensus       101 ~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~------------------~-  160 (303)
T 1qp8_A          101 IIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-E------------------G-  160 (303)
T ss_dssp             HHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-C------------------S-
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-c------------------c-
Confidence            9999999999999654 44589999999999999999999999999999999998654 1                  0 


Q ss_pred             ccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecC-
Q 019081          210 VDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA-  288 (346)
Q Consensus       210 ~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~-  288 (346)
                        ......++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+|||| 
T Consensus       161 --~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~  238 (303)
T 1qp8_A          161 --PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW  238 (303)
T ss_dssp             --SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCT
T ss_pred             --CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCC
Confidence              00123588999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCCCCCCCceEEccCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          289 WTEPFDPNDPILKFKNVLITPHVGGV--TEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       289 ~~EPl~~~~pL~~~~nviiTPH~a~~--t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      ++||+++++|||++||+++|||++++  |.++++++.+.+++|+.+|++|+++.|.
T Consensus       239 ~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~  294 (303)
T 1qp8_A          239 GRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNI  294 (303)
T ss_dssp             TTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCB
T ss_pred             CCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence            88999999999999999999999998  9999999999999999999999988764

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=2e-62  Score=470.86  Aligned_cols=313  Identities=25%  Similarity=0.402  Sum_probs=265.7

Q ss_pred             CCCCCCCcceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCC------CCCcccccCcceEEEEe-CCCCCHHHHhcC-CC
Q 019081            5 ARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP------ISDVPDVIANYHLCVVK-TMRLDSNCISRA-NQ   76 (346)
Q Consensus         5 ~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~   76 (346)
                      ||...+.+|||+++.+. +  ... .+.++...++++..++      .+++.+.++++|+++++ ..++++++++++ |+
T Consensus         1 ~~~~~~~~~~il~~~~~-~--~~~-~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~   76 (330)
T 2gcg_A            1 ASMRPVRLMKVFVTRRI-P--AEG-RVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGAN   76 (330)
T ss_dssp             ------CCEEEEESSCC-C--HHH-HHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTT
T ss_pred             CCCCCCCCCEEEEECCC-C--HHH-HHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCC
Confidence            34555556789987643 2  222 2334433245554322      24566678899998874 568999999998 99


Q ss_pred             CeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCcccc
Q 019081           77 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETL  151 (346)
Q Consensus        77 Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~-----~~~~~l  151 (346)
                      ||||++.|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.++++.|..     ..+.++
T Consensus        77 Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~---~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l  153 (330)
T 2gcg_A           77 LKVISTMSVGIDHLALDEIKKRGIRVGYTPDV---LTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGL  153 (330)
T ss_dssp             CCEEEESSSCCTTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCC
T ss_pred             ceEEEECCcccccccHHHHHhCCceEEeCCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCC
Confidence            99999999999999999999999999999998   8899999999999999999999999999999963     236899


Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV  230 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~  230 (346)
                      .|++|||||+|.||+.+|++++++|++|++||++......                  ....+ ...++++++++||+|+
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~------------------~~~~g~~~~~l~e~l~~aDvVi  215 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEE------------------AAEFQAEFVSTPELAAQSDFIV  215 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHH------------------HHTTTCEECCHHHHHHHCSEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhH------------------HHhcCceeCCHHHHHhhCCEEE
Confidence            9999999999999999999999999999999987543110                  01111 1238999999999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH  310 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH  310 (346)
                      +|+|.+++|+++++++.++.||+|++|||+|||+++|+++|.++|++|+|+||+||||++||+++++|||++|||++|||
T Consensus       216 ~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh  295 (330)
T 2gcg_A          216 VACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPH  295 (330)
T ss_dssp             ECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCS
T ss_pred             EeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          311 VGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       311 ~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      +|+.|.++..++.+.+++|+.+|++|+++.|.
T Consensus       296 ~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~  327 (330)
T 2gcg_A          296 IGSATHRTRNTMSLLAANNLLAGLRGEPMPSE  327 (330)
T ss_dssp             CTTCBHHHHHHHHHHHHHHHHHHHHTCCCTTE
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            99999999999999999999999999998764

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=1.2e-62  Score=475.33  Aligned_cols=307  Identities=21%  Similarity=0.324  Sum_probs=260.2

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEE-cCCCCCcccccC-----cceEEEEe-------CCCCCHHHHhcCC-CC
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIA-----NYHLCVVK-------TMRLDSNCISRAN-QM   77 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~d~~i~~-------~~~~~~~~l~~~~-~L   77 (346)
                      ++||+++.+........ .+.++...++.+. ..+.+++.+.+.     ++|+++++       ..++++++|+++| +|
T Consensus         3 ~~~vl~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~L   81 (348)
T 2w2k_A            3 RPRVLLLGDPARHLDDL-WSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSL   81 (348)
T ss_dssp             CCEEEECSSCCSSCHHH-HHHHHHHSEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTC
T ss_pred             CcEEEEECCccccChHH-HHHHHhcceEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCc
Confidence            56899988733322222 2233322122222 123456666666     78888763       3589999999998 69


Q ss_pred             eEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcc---cCC------CCc
Q 019081           78 KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK---LGV------PTG  148 (346)
Q Consensus        78 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~---~~~------~~~  148 (346)
                      |||+++|+|+|+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.   |..      ..+
T Consensus        82 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~---~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~  158 (348)
T 2w2k_A           82 KVFAAAGAGFDWLDLDALNERGVAFANSRGA---GDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSA  158 (348)
T ss_dssp             CEEEESSSCCTTBCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred             eEEEECCccccccCHHHHHhCCcEEEECCCC---CcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccC
Confidence            9999999999999999999999999999998   8899999999999999999999999999999   931      357


Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccC-C-cCCHHHHhhc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C-HEDIFEFASK  225 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~ell~~  225 (346)
                      .+|+|++|||||+|.||+.+|++++ +|||+|++||++......                  ....+ . ..++++++++
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~------------------~~~~g~~~~~~l~ell~~  220 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAET------------------EKALGAERVDSLEELARR  220 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHH------------------HHHHTCEECSSHHHHHHH
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhh------------------HhhcCcEEeCCHHHHhcc
Confidence            8999999999999999999999999 999999999987643110                  00001 1 2379999999


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCce
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNV  305 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv  305 (346)
                      ||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|.++|++|+|+||++|||++|| ++++|||++|||
T Consensus       221 aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nv  299 (348)
T 2w2k_A          221 SDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHV  299 (348)
T ss_dssp             CSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSE
T ss_pred             CCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 678899999999


Q ss_pred             EEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 019081          306 LITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG  341 (346)
Q Consensus       306 iiTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  341 (346)
                      ++|||++++|.++..++.+.+++|+.+|++|+++.|
T Consensus       300 iltPH~~~~t~e~~~~~~~~~~~ni~~~~~g~~~~~  335 (348)
T 2w2k_A          300 TLTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLL  335 (348)
T ss_dssp             EECCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCS
T ss_pred             EEcCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence            999999999999999999999999999999987765

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=8.7e-62  Score=466.74  Aligned_cols=302  Identities=28%  Similarity=0.422  Sum_probs=261.5

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEc-CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCccCCcc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGV   90 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   90 (346)
                      +||+++.+. +  ... .+.++...++++.. .+.+++.+.+.++|+++++ ..++++++++++|+||||++.|+|+|+|
T Consensus         3 ~~il~~~~~-~--~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i   78 (333)
T 2d0i_A            3 PKVGVLLKM-K--REA-LEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNI   78 (333)
T ss_dssp             SEEEECSCC-C--HHH-HHHHHTTSEEEECCSCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTB
T ss_pred             cEEEEECCC-C--HHH-HHHHHhcCCEEEeCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhCCCceEEEECCcccccc
Confidence            578887643 2  222 33344432343322 2334566778999998864 5689999999999999999999999999


Q ss_pred             chhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC----CCc----cccCCCeEEEEecC
Q 019081           91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTG----ETLLGKTVFILGFG  162 (346)
Q Consensus        91 d~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~----~~~----~~l~g~tvgIiG~G  162 (346)
                      |+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|..    ..+    .+|+|++|||||+|
T Consensus        79 d~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G  155 (333)
T 2d0i_A           79 DLEEATKRGIYVTKVSGL---LSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMG  155 (333)
T ss_dssp             CHHHHHHTTCEEECCCHH---HHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCS
T ss_pred             cHHHHHhCCcEEEeCCCc---ChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccC
Confidence            999999999999999998   8899999999999999999999999999999963    235    79999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCccccC
Q 019081          163 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAG  241 (346)
Q Consensus       163 ~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T~~  241 (346)
                      .||+.+|++++++||+|++||++.... ..                  ...+ ...++++++++||+|++|+|.+++|++
T Consensus       156 ~iG~~vA~~l~~~G~~V~~~d~~~~~~-~~------------------~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~  216 (333)
T 2d0i_A          156 AIGKAIARRLIPFGVKLYYWSRHRKVN-VE------------------KELKARYMDIDELLEKSDIVILALPLTRDTYH  216 (333)
T ss_dssp             HHHHHHHHHHGGGTCEEEEECSSCCHH-HH------------------HHHTEEECCHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCcchh-hh------------------hhcCceecCHHHHHhhCCEEEEcCCCChHHHH
Confidence            999999999999999999999876431 00                  0001 124799999999999999999999999


Q ss_pred             CCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCC-ceEEccCCCCCcHHHHH
Q 019081          242 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK-NVLITPHVGGVTEHSYR  320 (346)
Q Consensus       242 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~-nviiTPH~a~~t~~~~~  320 (346)
                      +++++.++.||+| +|||+|||.++|+++|+++|++|+|+||++|||++||++ ++|||.+| ||++|||++++|.++..
T Consensus       217 ~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nviltPh~~~~t~~~~~  294 (333)
T 2d0i_A          217 IINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLTPHYAGLALEAQE  294 (333)
T ss_dssp             SBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTEEECCSCTTCCHHHHH
T ss_pred             HhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCC-CchHHcCCCCEEEcCccCCCcHHHHH
Confidence            9999999999999 999999999999999999999999999999999999987 99999999 99999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCc
Q 019081          321 SMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       321 ~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      ++.+.+++|+.+|++|+++.|.
T Consensus       295 ~~~~~~~~n~~~~~~g~~~~~~  316 (333)
T 2d0i_A          295 DVGFRAVENLLKVLRGEVPEDL  316 (333)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTB
T ss_pred             HHHHHHHHHHHHHHcCCCCcCc
Confidence            9999999999999999988653

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=1.1e-61  Score=466.44  Aligned_cols=304  Identities=26%  Similarity=0.401  Sum_probs=261.4

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcC----CCCCcccccCcceEEEEeC-CCCCHHHHhcCCCCeEEEEcCccC
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV----PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGL   87 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~   87 (346)
                      +||+++.+. +  ... .+.++...++.+...    +.+++.+.+.++|+++++. .++++++|+++|+||||++.|+|+
T Consensus         3 ~~il~~~~~-~--~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~   78 (334)
T 2dbq_A            3 PKVFITREI-P--EVG-IKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGY   78 (334)
T ss_dssp             CEEEESSCC-C--HHH-HHHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCC
T ss_pred             cEEEEecCC-C--HHH-HHHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhCCCceEEEECCccc
Confidence            588886543 2  222 233443223333221    2345667789999998864 589999999999999999999999


Q ss_pred             CccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccC----C-----CCccccCCCeEEE
Q 019081           88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG----V-----PTGETLLGKTVFI  158 (346)
Q Consensus        88 d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~----~-----~~~~~l~g~tvgI  158 (346)
                      |+||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+++|.|.    .     ..+.+|.|++|||
T Consensus        79 d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgI  155 (334)
T 2dbq_A           79 DNIDIEEATKRGIYVTNTPDV---LTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGI  155 (334)
T ss_dssp             TTBCHHHHHHTTCEEECCCST---THHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEE
T ss_pred             ccccHHHHHhCCCEEEeCCCc---CHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEE
Confidence            999999999999999999998   889999999999999999999999999999995    1     1367999999999


Q ss_pred             EecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCcc
Q 019081          159 LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ  238 (346)
Q Consensus       159 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~  238 (346)
                      ||+|.||+.+|++++++|++|++||++.... ...              ..   .....++++++++||+|++|+|.+++
T Consensus       156 IG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~-~~~--------------~~---g~~~~~l~~~l~~aDvVil~vp~~~~  217 (334)
T 2dbq_A          156 IGLGRIGQAIAKRAKGFNMRILYYSRTRKEE-VER--------------EL---NAEFKPLEDLLRESDFVVLAVPLTRE  217 (334)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHH--------------HH---CCEECCHHHHHHHCSEEEECCCCCTT
T ss_pred             EccCHHHHHHHHHHHhCCCEEEEECCCcchh-hHh--------------hc---CcccCCHHHHHhhCCEEEECCCCChH
Confidence            9999999999999999999999999875431 000              00   01235899999999999999999999


Q ss_pred             ccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHH
Q 019081          239 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHS  318 (346)
Q Consensus       239 T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~  318 (346)
                      |+++++++.++.||+|++|||+|||.++|+++|.++|++|+|+||++|||++|| ++++|||.+|||++|||+|++|.++
T Consensus       218 t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP-~~~~~L~~~~~vi~tPh~~~~t~~~  296 (334)
T 2dbq_A          218 TYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGSASFGA  296 (334)
T ss_dssp             TTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS-CCCHHHHHCTTEEECSSCTTCSHHH
T ss_pred             HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCC-CCCchhhcCCCEEECCccCCCcHHH
Confidence            999999999999999999999999999999999999999999999999999999 7899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          319 YRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       319 ~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      ..++.+.+++|+.+|++|+++.|.
T Consensus       297 ~~~~~~~~~~n~~~~~~g~~~~~~  320 (334)
T 2dbq_A          297 REGMAELVAKNLIAFKRGEIPPTL  320 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccc
Confidence            999999999999999999988754

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=5.8e-62  Score=458.55  Aligned_cols=254  Identities=22%  Similarity=0.324  Sum_probs=229.7

Q ss_pred             cccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHh
Q 019081           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK  130 (346)
Q Consensus        51 ~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~  130 (346)
                      +.++++|+++++..++      ++|+||||++.|+|+|+||+++|++++|.++|. |.   |+.+||||++++||++.|+
T Consensus        30 ~~~~~ad~li~~~~~~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~~-~~---~~~~vAE~~~~~~L~~~R~   99 (290)
T 3gvx_A           30 PDYYDAEAQVIKDRYV------LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GA---YSISVAEHAFALLLAHAKN   99 (290)
T ss_dssp             TSCCCCSEEEESSCCC------CCSSCCEEEECSSCCTTSCGGGSCTTSEEECCH-HH---HHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhhhhhhhhhh------hhhhhHHHHHHhcCCceeecCCCccceEEeecC-Cc---ceeeHHHHHHHHHHHHHHh
Confidence            6678999988854332      789999999999999999999999987776664 54   7899999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc
Q 019081          131 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV  210 (346)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (346)
                      +..+++.+++++|.....++|+|+||||||+|.||+++|+++++|||+|++|||+....                  ...
T Consensus       100 ~~~~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~------------------~~~  161 (290)
T 3gvx_A          100 ILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQ------------------NVD  161 (290)
T ss_dssp             HHHHHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCT------------------TCS
T ss_pred             hhhhhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccc------------------ccc
Confidence            99999999999998766688999999999999999999999999999999999976432                  011


Q ss_pred             cccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCC
Q 019081          211 DEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  290 (346)
Q Consensus       211 ~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  290 (346)
                      .   ...++++++++||+|++|+|+|++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++
T Consensus       162 ~---~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~  238 (290)
T 3gvx_A          162 V---ISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWN  238 (290)
T ss_dssp             E---ECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             c---ccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccC
Confidence            1   2358999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCceEEccCCC-CCcHHHHHHHHHHHHHHHHHHHcCCC
Q 019081          291 EPFDPNDPILKFKNVLITPHVG-GVTEHSYRSMAKVVGDVALQLHAGTP  338 (346)
Q Consensus       291 EPl~~~~pL~~~~nviiTPH~a-~~t~~~~~~~~~~~~~ni~~~~~g~~  338 (346)
                      ||+   +|||++|||++|||+| ++|.++.+++.+.+++|+.+|++|+-
T Consensus       239 EP~---~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          239 EPE---ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             TTS---CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred             Ccc---cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence            997   8999999999999999 89999999999999999999999874

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=6e-61  Score=465.27  Aligned_cols=281  Identities=21%  Similarity=0.299  Sum_probs=241.2

Q ss_pred             CcceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCcccccCcceEEEEeC-CCCCHHHHhcCCCCeEEEEcCccCCc
Q 019081           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEG   89 (346)
Q Consensus        11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~   89 (346)
                      .||||++.... +.    ..++++....+.+.. ..+...+.+.++|+++++. .++++++++ .++||||+++|+|+||
T Consensus         2 ~mmkIl~~~~~-p~----~~~~~~~~~~v~~~~-~~~~~~~~l~~ad~li~~~~~~v~~~ll~-~~~Lk~I~~~~~G~D~   74 (381)
T 3oet_A            2 NAMKILVDENM-PY----ARELFSRLGEVKAVP-GRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATAGTDH   74 (381)
T ss_dssp             CCCEEEEETTS-TT----HHHHHTTSSEEEEEC-C---CHHHHTTCSEEEECTTSCBSHHHHT-TSCCCEEEESSSCCTT
T ss_pred             CceEEEECCCC-cH----HHHHHhhCCcEEEeC-CCCCCHHHHCCCEEEEECCCCCCCHHHHc-CCCCEEEEEccccccc
Confidence            46899997654 32    345666554333322 1222345678999999864 679999999 6779999999999999


Q ss_pred             cchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHH
Q 019081           90 VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELA  169 (346)
Q Consensus        90 id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA  169 (346)
                      ||+++|+++||.|+|+||+   |+.+||||++++||++.|+.                +.+|+|+||||||+|+||+++|
T Consensus        75 iD~~~~~~~gI~v~n~pg~---~~~~VAE~~l~~lL~l~r~~----------------g~~l~gktvGIIGlG~IG~~vA  135 (381)
T 3oet_A           75 VDEAWLKQAGIGFSAAPGC---NAIAVVEYVFSALLMLAERD----------------GFSLRDRTIGIVGVGNVGSRLQ  135 (381)
T ss_dssp             BCHHHHHHTTCEEECCTTT---THHHHHHHHHHHHHHHHHHT----------------TCCGGGCEEEEECCSHHHHHHH
T ss_pred             cCHHHHHhCCEEEEECCCc---CcchhHHHHHHHHHHHHHhc----------------CCccCCCEEEEEeECHHHHHHH
Confidence            9999999999999999998   89999999999999999862                4789999999999999999999


Q ss_pred             HHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCcc----ccCCCCH
Q 019081          170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNK  245 (346)
Q Consensus       170 ~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~----T~~li~~  245 (346)
                      +++++|||+|++||++....                  .   ......++++++++||+|++|+|+|++    |+++|++
T Consensus       136 ~~l~a~G~~V~~~d~~~~~~------------------~---~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~  194 (381)
T 3oet_A          136 TRLEALGIRTLLCDPPRAAR------------------G---DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADE  194 (381)
T ss_dssp             HHHHHTTCEEEEECHHHHHT------------------T---CCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCH
T ss_pred             HHHHHCCCEEEEECCChHHh------------------c---cCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCH
Confidence            99999999999999743210                  0   011346899999999999999999999    9999999


Q ss_pred             HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHH
Q 019081          246 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKV  325 (346)
Q Consensus       246 ~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~  325 (346)
                      +.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ +++||.++ +++|||+||+|.++..++..+
T Consensus       195 ~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~-~~~L~~~~-~i~TPHiag~t~e~~~~~~~~  272 (381)
T 3oet_A          195 TLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDL-NVALLEAV-DIGTSHIAGYTLEGKARGTTQ  272 (381)
T ss_dssp             HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHHHS-SEECSSCTTCCHHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCC-cchhhhCC-EEECCccCcCcHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986 56788764 899999999999999999999


Q ss_pred             HHHHHHHHHcCCCCC
Q 019081          326 VGDVALQLHAGTPLT  340 (346)
Q Consensus       326 ~~~ni~~~~~g~~~~  340 (346)
                      +++|+.+|+.+.+-.
T Consensus       273 ~~~~l~~~l~~~~~~  287 (381)
T 3oet_A          273 VFEAYSAFIGREQRV  287 (381)
T ss_dssp             HHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHcCCccc
Confidence            999999999886543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=6e-59  Score=472.19  Aligned_cols=303  Identities=27%  Similarity=0.440  Sum_probs=264.2

Q ss_pred             CCcceEEEeCCCCCCChhHHHHHHhcCCCeEEEcC---CCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCc
Q 019081           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGV   85 (346)
Q Consensus        10 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~   85 (346)
                      |.+|||+++++..+..    .+.++..  +++...   +.+++.+.+.++|+++++ ..++++++|+++|+||||+++|+
T Consensus         2 m~~~~vl~~~~~~~~~----~~~l~~~--~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~   75 (529)
T 1ygy_A            2 VSLPVVLIADKLAPST----VAALGDQ--VEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGV   75 (529)
T ss_dssp             -CCCEEEECSSCCGGG----GTTSCSS--SEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSS
T ss_pred             CCCcEEEEeCCCCHHH----HHHHhcC--ceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhCCCCcEEEECCc
Confidence            4567999987653321    1223332  344322   345677788999999885 46899999999999999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCH
Q 019081           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGN  163 (346)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~  163 (346)
                      |+||||+++|+++||.|+|+||+   |+.+||||++++||++.|+++.+++.+++|+|..  ..+.+|+|+|+||||+|.
T Consensus        76 G~d~id~~~~~~~gi~v~n~p~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~  152 (529)
T 1ygy_A           76 GLDNVDVDAATARGVLVVNAPTS---NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGR  152 (529)
T ss_dssp             CCTTBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSH
T ss_pred             CcCccCHhHHHhCCeEEEECCCc---chHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCH
Confidence            99999999999999999999998   8899999999999999999999999999999974  357899999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCccccCC
Q 019081          164 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       164 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~~T~~l  242 (346)
                      ||+++|++++++||+|++||++.... .                  ....+ ...++++++++||+|++|+|++++|+++
T Consensus       153 IG~~vA~~l~~~G~~V~~~d~~~~~~-~------------------a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~  213 (529)
T 1ygy_A          153 IGQLVAQRIAAFGAYVVAYDPYVSPA-R------------------AAQLGIELLSLDDLLARADFISVHLPKTPETAGL  213 (529)
T ss_dssp             HHHHHHHHHHTTTCEEEEECTTSCHH-H------------------HHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCChh-H------------------HHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHH
Confidence            99999999999999999999875321 0                  00111 1247999999999999999999999999


Q ss_pred             CCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHH
Q 019081          243 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       243 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~  322 (346)
                      ++++.++.||+|+++||+|||+++|+++|+++|++|+|+||++|||+.||+ +++|||+++|+++|||++++|.++.+++
T Consensus       214 i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~-~~~~L~~~~~vilTPh~~~~t~ea~~~~  292 (529)
T 1ygy_A          214 IDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRA  292 (529)
T ss_dssp             BCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC-SCCGGGGCTTEEECSSCSSCBHHHHHHH
T ss_pred             hCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCC-CCchHHhCCCEEEccccCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999996 6899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCC
Q 019081          323 AKVVGDVALQLHAGTPLTG  341 (346)
Q Consensus       323 ~~~~~~ni~~~~~g~~~~~  341 (346)
                      ...+++|+.+++.|+++.|
T Consensus       293 ~~~~~~~l~~~l~~~~~~~  311 (529)
T 1ygy_A          293 GTDVAESVRLALAGEFVPD  311 (529)
T ss_dssp             HHHHHHHHHHHHTTCCCTT
T ss_pred             HHHHHHHHHHHHcCCCCCc
Confidence            9999999999999998765

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.6e-58  Score=447.71  Aligned_cols=281  Identities=20%  Similarity=0.306  Sum_probs=240.1

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCccCCccc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD   91 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id   91 (346)
                      |||++.... +.    ..+.++....+.+... .+...+.+.++|+++++ ..++++++++ +|+||||+++|+|+||||
T Consensus         1 mkil~~~~~-~~----~~~~~~~~~~v~~~~~-~~~~~~~l~~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD   73 (380)
T 2o4c_A            1 MRILADENI-PV----VDAFFADQGSIRRLPG-RAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLD   73 (380)
T ss_dssp             CEEEEETTC-TT----HHHHHGGGSEEEEECG-GGCSTTTTTTCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBC
T ss_pred             CEEEEecCc-hH----HHHHHHhCCcEEEecC-CcCChHHHCCcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhh
Confidence            488887543 32    2345554433333221 11223456899999886 4689999999 899999999999999999


Q ss_pred             hhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHH
Q 019081           92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR  171 (346)
Q Consensus        92 ~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~  171 (346)
                      +++|+++||.|+|+||+   |+.+||||++++||++.|+.                +.+|+|+||||||+|+||+++|++
T Consensus        74 ~~~~~~~gI~v~n~pg~---~~~~vAE~~l~~lL~l~r~~----------------~~~l~g~tvGIIGlG~IG~~vA~~  134 (380)
T 2o4c_A           74 LDYFAEAGIAWSSAPGC---NARGVVDYVLGCLLAMAEVR----------------GADLAERTYGVVGAGQVGGRLVEV  134 (380)
T ss_dssp             HHHHHHHTCEEECCTTT---THHHHHHHHHHHHHHHHHHH----------------TCCGGGCEEEEECCSHHHHHHHHH
T ss_pred             HHHHHhCCCEEEeCCCc---ChHHHHHHHHHHHHHHHhhh----------------hcccCCCEEEEEeCCHHHHHHHHH
Confidence            99999999999999998   88999999999999999872                368999999999999999999999


Q ss_pred             HccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCcc----ccCCCCHHH
Q 019081          172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNKSF  247 (346)
Q Consensus       172 l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~----T~~li~~~~  247 (346)
                      +++|||+|++||++....                  .   ......++++++++||+|++|+|++++    |+++++++.
T Consensus       135 l~~~G~~V~~~d~~~~~~------------------~---~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~  193 (380)
T 2o4c_A          135 LRGLGWKVLVCDPPRQAR------------------E---PDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPR  193 (380)
T ss_dssp             HHHTTCEEEEECHHHHHH------------------S---TTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHH
T ss_pred             HHHCCCEEEEEcCChhhh------------------c---cCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHH
Confidence            999999999999753210                  0   001346899999999999999999999    999999999


Q ss_pred             HccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHHHHHHH
Q 019081          248 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG  327 (346)
Q Consensus       248 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~~~~~~  327 (346)
                      |++||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+ ++++||. +||++|||+||+|.++..++.++++
T Consensus       194 l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~-~~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~  271 (380)
T 2o4c_A          194 LAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQ-ADPELAA-RCLIATPHIAGYSLEGKLRGTAQIY  271 (380)
T ss_dssp             HHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTS-CCHHHHT-TCSEECSSCTTCCHHHHHHHHHHHH
T ss_pred             HhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCC-Cchhhcc-CCEEEccccCcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999996 4677887 5999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCc
Q 019081          328 DVALQLHAGTPLTGL  342 (346)
Q Consensus       328 ~ni~~~~~g~~~~~~  342 (346)
                      +|+.+|++|++..++
T Consensus       272 ~nl~~~l~g~~~~~~  286 (380)
T 2o4c_A          272 QAYCAWRGIAERVSL  286 (380)
T ss_dssp             HHHHHHHTCCCCCCG
T ss_pred             HHHHHHHcCCCccch
Confidence            999999999876553

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=3.4e-39  Score=321.98  Aligned_cols=227  Identities=15%  Similarity=0.137  Sum_probs=191.0

Q ss_pred             CCCeEEE-EcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCC
Q 019081           75 NQMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG  153 (346)
Q Consensus        75 ~~Lk~I~-~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g  153 (346)
                      |+++.|+ ..++|+|++  +++.++||.|+|+|++   |. +|||+       ++|++....+.+..+ |....+.++.|
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~v---n~-sVae~-------l~r~~~~~~~~l~~g-w~~~~g~~L~G  277 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNV---ND-SVTKS-------KFDNLYGCRESLVDG-IKRATDVMIAG  277 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHH-------HHHHHHHHHTTHHHH-HHHHHCCCCTT
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCc---cH-HHHHH-------HHhhhHhhhhhhhhh-hhhccccccCC
Confidence            7899999 889999988  6899999999999998   76 99994       347776666656655 65445678999


Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      ++|||||+|.||+.+|+++++|||+|++||++......                 .........++++++++||+|++|+
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~-----------------a~~~G~~~~~l~ell~~aDiVi~~~  340 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQ-----------------AAMEGYRVVTMEYAADKADIFVTAT  340 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHH-----------------HHTTTCEECCHHHHTTTCSEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHH-----------------HHHcCCEeCCHHHHHhcCCEEEECC
Confidence            99999999999999999999999999999987543100                 0000112358999999999999997


Q ss_pred             cCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCC--CceEEccC
Q 019081          234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF--KNVLITPH  310 (346)
Q Consensus       234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~--~nviiTPH  310 (346)
                          .|+++|+++.|++||+|++|||+|||++ ||+++| +||++|+|+    |+++.||+|.++|||.+  |||++| |
T Consensus       341 ----~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~----~~~Dv~plp~~~pL~~l~~~nvv~t-H  410 (494)
T 3d64_A          341 ----GNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK----PQVDHIIFPDGKRVILLAEGRLVNL-G  410 (494)
T ss_dssp             ----SSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE----TTEEEEECTTSCEEEEEGGGSBHHH-H
T ss_pred             ----CcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc----eeEEEEECCCCCchhhcCCCCEEEE-e
Confidence                6899999999999999999999999999 699999 999999997    55555688889999999  999999 9


Q ss_pred             CC-CCcHH-HHHHHHHHHHHHHHHHHcCCCCCCc
Q 019081          311 VG-GVTEH-SYRSMAKVVGDVALQLHAGTPLTGL  342 (346)
Q Consensus       311 ~a-~~t~~-~~~~~~~~~~~ni~~~~~g~~~~~~  342 (346)
                      +| |.+.+ ...++..++++|+.+|++|+++.|.
T Consensus       411 ~atg~~~~~~~~~~a~~~~~ni~~~~~g~~~~n~  444 (494)
T 3d64_A          411 CATGHPSFVMSNSFTNQTLAQIELFTRGGEYANK  444 (494)
T ss_dssp             TSCCSCHHHHHHHHHHHHHHHHHHHHHGGGSCSS
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence            99 66754 6778899999999999999887663

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=8.6e-39  Score=317.99  Aligned_cols=228  Identities=14%  Similarity=0.134  Sum_probs=196.3

Q ss_pred             CCCCeEEE-EcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccC
Q 019081           74 ANQMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL  152 (346)
Q Consensus        74 ~~~Lk~I~-~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~  152 (346)
                      +|+++.|+ ..++|+|++  ++++++||.|+|+|++   |. +|||       +++|++....+.++.| |....+.++.
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~v---n~-sVae-------~l~r~~~~~~~~l~~g-w~r~~~~~l~  256 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINV---ND-AVTK-------QKYDNVYGCRHSLPDG-LMRATDFLIS  256 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEEC---TT-SHHH-------HTTHHHHHHHHHHHHH-HHHHHCCCCT
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCc---cH-HHHH-------HHHhchHhHHHHHhhh-hhhccccccC
Confidence            37899999 889999998  7899999999999998   66 9999       4568888888888777 7655567899


Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      |++|||||+|.||+.+|+++++|||+|++||++......                 .........++++++++||+|++|
T Consensus       257 GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~-----------------a~~~g~~~~~l~ell~~aDiVi~~  319 (479)
T 1v8b_A          257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQ-----------------AVMEGFNVVTLDEIVDKGDFFITC  319 (479)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHH-----------------HHTTTCEECCHHHHTTTCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHH-----------------HHHcCCEecCHHHHHhcCCEEEEC
Confidence            999999999999999999999999999999987543100                 001111235899999999999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHH--HHHhCCCeEEEEecCCCCCCCCCCCCCCC--CceEE
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH--YLECGHLGGLGIDVAWTEPFDPNDPILKF--KNVLI  307 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~--aL~~g~i~ga~lDV~~~EPl~~~~pL~~~--~nvii  307 (346)
                      +    .|+++|+++.|+.||+|++|||+|||++ ||+++|.+  ||++|+|+ +++|||   |+|+++|||.+  |||++
T Consensus       320 ~----~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nvv~  391 (479)
T 1v8b_A          320 T----GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPNGNKIIVLARGRLLN  391 (479)
T ss_dssp             C----SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHH
T ss_pred             C----ChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCCCCeeeEecCCCEEE
Confidence            4    7899999999999999999999999999 99999999  99999998 899998   55678999999  99999


Q ss_pred             ccCCC-CCcHH-HHHHHHHHHHHHHHHHHcCC--CCCC
Q 019081          308 TPHVG-GVTEH-SYRSMAKVVGDVALQLHAGT--PLTG  341 (346)
Q Consensus       308 TPH~a-~~t~~-~~~~~~~~~~~ni~~~~~g~--~~~~  341 (346)
                      | |+| |.+.+ ...++..++++|+..|++|+  ++.|
T Consensus       392 t-H~atghp~e~~~~s~a~~~~~ni~~~~~g~~~~l~n  428 (479)
T 1v8b_A          392 L-GCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYEN  428 (479)
T ss_dssp             H-HSSCCSCHHHHHHHHHHHHHHHHHHHHTTTSSSCCS
T ss_pred             E-eccCCCCchhHHHHHHHHHHHHHHHHHcCCCCcCCc
Confidence            9 999 66756 56788899999999999999  8776

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=1.1e-29  Score=239.20  Aligned_cols=211  Identities=14%  Similarity=0.159  Sum_probs=158.8

Q ss_pred             CCcceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCC-----------CCcccccCcceEEEEe----------------
Q 019081           10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPI-----------SDVPDVIANYHLCVVK----------------   62 (346)
Q Consensus        10 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~d~~i~~----------------   62 (346)
                      +.-|||++++.... ...+.+.+.+....+.+..++.           +++.+.++++|+++++                
T Consensus         3 ~~~m~i~v~~~~~~-~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~   81 (293)
T 3d4o_A            3 LTGKHVVIIGGDAR-QLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSN   81 (293)
T ss_dssp             CTTCEEEEECBCHH-HHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCS
T ss_pred             ccCcEEEEECCCHH-HHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeeccccc
Confidence            44568999875422 1222333333222233333221           4456677899998874                


Q ss_pred             -CCCCCHHHHhcCCCCeEEEEcCccCCccch-hHHhhCCcEEEecC------CCCCCChhhHHHHHHHHHHHHHHhHHHH
Q 019081           63 -TMRLDSNCISRANQMKLIMQFGVGLEGVDI-NAATRCGIKVARIP------GDVTGNAASCAELTIYLMLGLLRKQNEM  134 (346)
Q Consensus        63 -~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~-~~~~~~gI~v~n~p------~~~~~na~~vAE~~~~~~l~~~R~~~~~  134 (346)
                       ..++++++++++|+||+|+   +|+|++|+ ++|+++||.|+|+|      ++   |+.+|||++++++|..       
T Consensus        82 ~~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~---~~~svae~a~~~~l~~-------  148 (293)
T 3d4o_A           82 ESIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIY---NSIPTAEGTIMMAIQH-------  148 (293)
T ss_dssp             CCCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHH---HHHHHHHHHHHHHHHH-------
T ss_pred             CCccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeee---ccHhHHHHHHHHHHHh-------
Confidence             2257999999999999997   79999998 89999999999998      66   7899999999988863       


Q ss_pred             HHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC
Q 019081          135 RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG  214 (346)
Q Consensus       135 ~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (346)
                                  .+.++.|++|||||+|.||+.+|+++++||++|+++||+..+..... .            .... ..
T Consensus       149 ------------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~------------~g~~-~~  202 (293)
T 3d4o_A          149 ------------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-E------------MGME-PF  202 (293)
T ss_dssp             ------------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-H------------TTSE-EE
T ss_pred             ------------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-H------------CCCe-ec
Confidence                        14689999999999999999999999999999999998754310000 0            0000 00


Q ss_pred             CcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          215 CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       215 ~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      ...++++++++||+|++|+|+     ++++++.|+.||+|+++||++||+.
T Consensus       203 ~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          203 HISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             ChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            124788999999999999996     6899999999999999999999865

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.95  E-value=2.3e-27  Score=224.10  Aligned_cols=216  Identities=15%  Similarity=0.185  Sum_probs=154.9

Q ss_pred             CCCCcceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCC-----------CcccccCcceEEEE----e----------
Q 019081            8 SDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS-----------DVPDVIANYHLCVV----K----------   62 (346)
Q Consensus         8 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~~i~----~----------   62 (346)
                      ++|+-|||++++.... .....+.+.+....+.+..++.+           ++.+.++++|++++    .          
T Consensus         3 ~~~~~mki~v~~~~~~-~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~   81 (300)
T 2rir_A            3 AMLTGLKIAVIGGDAR-QLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVF   81 (300)
T ss_dssp             CCCCSCEEEEESBCHH-HHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSS
T ss_pred             ccccCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccc
Confidence            4566679999976422 12223333332222333333322           24566789999887    2          


Q ss_pred             -CCC--CCHHHHhcCCCCeEEEEcCccCCccc-hhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHH
Q 019081           63 -TMR--LDSNCISRANQMKLIMQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI  138 (346)
Q Consensus        63 -~~~--~~~~~l~~~~~Lk~I~~~~~G~d~id-~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~  138 (346)
                       ..+  +++++++.+|++|+|+   +|+|++| +++|+++||.|+|+|++   +  ++         ++.|+++..    
T Consensus        82 a~~~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~---~--~v---------~~~r~~~~~----  140 (300)
T 2rir_A           82 SNEEVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFER---D--DI---------AIYNSIPTV----  140 (300)
T ss_dssp             CSSCEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGS---H--HH---------HHHHHHHHH----
T ss_pred             ccCCccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCC---C--ce---------EEEcCccHH----
Confidence             345  7899999999999998   8999999 99999999999999986   2  33         234555443    


Q ss_pred             HhcccC---CCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC
Q 019081          139 EQKKLG---VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC  215 (346)
Q Consensus       139 ~~~~~~---~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (346)
                       .|.|.   ...+.++.|++|||||+|.||+.+|+++++||++|++|||+..+.....             ..... ...
T Consensus       141 -~g~~~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~-------------~~g~~-~~~  205 (300)
T 2rir_A          141 -EGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARIT-------------EMGLV-PFH  205 (300)
T ss_dssp             -HHHHHHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-------------HTTCE-EEE
T ss_pred             -HHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-------------HCCCe-EEc
Confidence             23342   1246789999999999999999999999999999999998754310000             00000 001


Q ss_pred             cCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          216 HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       216 ~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      ..++++++++||+|++|+|+     ++++++.++.||+|+++||++||+.
T Consensus       206 ~~~l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          206 TDELKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             GGGHHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             hhhHHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            25789999999999999996     6899999999999999999999865

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.92  E-value=4.6e-25  Score=214.82  Aligned_cols=226  Identities=15%  Similarity=0.164  Sum_probs=168.8

Q ss_pred             cccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEE----------ecCCCCCCChhhHHHHH
Q 019081           51 DVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVA----------RIPGDVTGNAASCAELT  120 (346)
Q Consensus        51 ~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~----------n~p~~~~~na~~vAE~~  120 (346)
                      +.+.++|+++....++++++....++..++.....++|...++++.++||.+.          |.|.+     .+.||++
T Consensus        63 ~~~~~adii~~vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~-----s~~ae~a  137 (377)
T 2vhw_A           63 QVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLL-----APMSEVA  137 (377)
T ss_dssp             HHHHHCSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT-----HHHHHHH
T ss_pred             HHhccCCEEEEeCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc-----CchHHHH
Confidence            34457898765566777888777888888888888899999999999999997          55655     4678999


Q ss_pred             HHHHHHHH-HhHHHHHHHHHhcccCC-CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccch
Q 019081          121 IYLMLGLL-RKQNEMRMAIEQKKLGV-PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSA  198 (346)
Q Consensus       121 ~~~~l~~~-R~~~~~~~~~~~~~~~~-~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~  198 (346)
                      .++++.+. |++..    ...++|.. ....++.|++|+|+|+|.||+.+|+.++++|++|+++|++..+.......   
T Consensus       138 g~~a~~~a~r~l~~----~~~g~~~~~~~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~---  210 (377)
T 2vhw_A          138 GRLAAQVGAYHLMR----TQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAE---  210 (377)
T ss_dssp             HHHHHHHHHHHTSG----GGTSCCCCTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHH----hcCCCcccccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHh---
Confidence            86665554 66522    23343321 12247999999999999999999999999999999999875431100000   


Q ss_pred             hhhccccccccccccCCcCCHHHHhhcCCEEEEee--cCCccccCCCCHHHHccCCCCcEEEEcC--CCCCCCHHHHHHH
Q 019081          199 LAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLLDYEAIAHY  274 (346)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l--Plt~~T~~li~~~~l~~mk~gailIN~s--Rg~~vd~~aL~~a  274 (346)
                      +.      ...........+++++++++|+|+.++  |.+ +|.++++++.++.||+|++|||+|  +|+          
T Consensus       211 ~g------~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg----------  273 (377)
T 2vhw_A          211 FC------GRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG----------  273 (377)
T ss_dssp             TT------TSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC----------
T ss_pred             cC------CeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC----------
Confidence            00      000000001246788899999999966  555 789999999999999999999999  442          


Q ss_pred             HHhCCCeEEEEecCCC-CCCCCCCCCCCCCceE--EccCCCCCcHH
Q 019081          275 LECGHLGGLGIDVAWT-EPFDPNDPILKFKNVL--ITPHVGGVTEH  317 (346)
Q Consensus       275 L~~g~i~ga~lDV~~~-EPl~~~~pL~~~~nvi--iTPH~a~~t~~  317 (346)
                                  ||+. ||.+.++|+|..+||+  +|||+++.+..
T Consensus       274 ------------v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~  307 (377)
T 2vhw_A          274 ------------CFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPK  307 (377)
T ss_dssp             ------------SBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHH
T ss_pred             ------------ccccccCCCCCCCEEEECCEEEEecCCcchhhHH
Confidence                        7888 9988899999999998  99999998866

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.92  E-value=5.8e-27  Score=234.38  Aligned_cols=224  Identities=17%  Similarity=0.143  Sum_probs=172.4

Q ss_pred             CCeEEE-EcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCC
Q 019081           76 QMKLIM-QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGK  154 (346)
Q Consensus        76 ~Lk~I~-~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~  154 (346)
                      +++-++ ..|+|+|++  .++.++||.++|++++   |. +|||+.       +|++....+....+ |....+..+.|+
T Consensus       210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~v---n~-sVae~~-------~r~l~~~~~s~~~g-~~r~~~~~l~Gk  275 (494)
T 3ce6_A          210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINV---ND-SVTKSK-------FDNKYGTRHSLIDG-INRGTDALIGGK  275 (494)
T ss_dssp             HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEEC---TT-SHHHHT-------THHHHHHHHHHHHH-HHHHHCCCCTTC
T ss_pred             CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCc---cH-HHHHHH-------HhhhhhhhhhhhHH-HHhccCCCCCcC
Confidence            444444 779999998  6789999999999997   66 899953       34443333322222 322223478999


Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEee
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~l  233 (346)
                      +|+|+|+|.||+.+|++++++|++|+++|++..+...                  +...+ ...+++++++.+|+|+.|+
T Consensus       276 tV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~------------------A~~~Ga~~~~l~e~l~~aDvVi~at  337 (494)
T 3ce6_A          276 KVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQ------------------AMMEGFDVVTVEEAIGDADIVVTAT  337 (494)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH------------------HHHTTCEECCHHHHGGGCSEEEECS
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH------------------HHHcCCEEecHHHHHhCCCEEEECC
Confidence            9999999999999999999999999999987543110                  01111 2357889999999999986


Q ss_pred             cCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHH-HHHhCCCeEEEEecCCCCCCCCCCC--CCCCCceE---
Q 019081          234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH-YLECGHLGGLGIDVAWTEPFDPNDP--ILKFKNVL---  306 (346)
Q Consensus       234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~-aL~~g~i~ga~lDV~~~EPl~~~~p--L~~~~nvi---  306 (346)
                      +    +.++++.+.|+.||+|+++||+||+.. +|+.+|.+ +|++++|. +++|+|+.+|.  +++  |+..+|++   
T Consensus       338 g----t~~~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~--~~~l~LL~~grlvnL~  410 (494)
T 3ce6_A          338 G----NKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT--GRSIIVLSEGRLLNLG  410 (494)
T ss_dssp             S----SSCSBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT--CCEEEEEGGGSCHHHH
T ss_pred             C----CHHHHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc--chHHHHHhCCCEEecc
Confidence            4    567899999999999999999999999 99999999 89889997 56899866432  455  55678888   


Q ss_pred             -EccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 019081          307 -ITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG  341 (346)
Q Consensus       307 -iTPH~a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  341 (346)
                       +|||+++.+.++   +...+.+++..+.+|+++.+
T Consensus       411 ~~TPH~a~~~~~s---~~~qa~~ai~~~~~g~~~~~  443 (494)
T 3ce6_A          411 NATGHPSFVMSNS---FANQTIAQIELWTKNDEYDN  443 (494)
T ss_dssp             HSCCSCHHHHHHH---HHHHHHHHHHHHHTGGGCCS
T ss_pred             CCCCCccccchHH---HHHHHHHHHHHHHcCCCCCC
Confidence             999999988775   36788999999999877654

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.86  E-value=2.4e-23  Score=204.55  Aligned_cols=155  Identities=22%  Similarity=0.269  Sum_probs=124.7

Q ss_pred             ccc-cCCCeEEEEecCHHHHHHHHHHcc-CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc
Q 019081          148 GET-LLGKTVFILGFGNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (346)
Q Consensus       148 ~~~-l~g~tvgIiG~G~IG~~vA~~l~~-~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (346)
                      |.+ |+||||||+|+|+||+.+|+++++ |||+|++++++....                    ...  ...+++++++.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~--------------------~~~--~gvdl~~L~~~  263 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGI--------------------YNP--DGLNADEVLKW  263 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE--------------------EEE--EEECHHHHHHH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccc--------------------cCc--cCCCHHHHHHH
Confidence            567 999999999999999999999999 999999995432210                    000  01256676664


Q ss_pred             CCE-EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCC-CCCCCCC
Q 019081          226 ADV-VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPN-DPILKFK  303 (346)
Q Consensus       226 aDi-V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~-~pL~~~~  303 (346)
                      +|. .++ +|+ ++|++ |+.+.|..||+ .+|||+|||++||+++ +++|+++.|++++     +||++++ ++||.++
T Consensus       264 ~d~~~~l-~~l-~~t~~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~  333 (419)
T 1gtm_A          264 KNEHGSV-KDF-PGATN-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEK  333 (419)
T ss_dssp             HHHHSSS-TTC-TTSEE-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHT
T ss_pred             HHhcCEe-ecC-ccCee-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcC
Confidence            443 222 576 67888 89999999998 5999999999999999 6999999999987     8998765 7999999


Q ss_pred             ceEEccCC----C-----------------CCcHHHHHHHHHHHHHHHHHHH
Q 019081          304 NVLITPHV----G-----------------GVTEHSYRSMAKVVGDVALQLH  334 (346)
Q Consensus       304 nviiTPH~----a-----------------~~t~~~~~~~~~~~~~ni~~~~  334 (346)
                      ||++|||+    |                 +.+++...++.+.+.+++.+++
T Consensus       334 ~V~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~  385 (419)
T 1gtm_A          334 GILQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVY  385 (419)
T ss_dssp             TCEEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEECchhhhCCcceeeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999    5                 5567788888888888887765

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.83  E-value=6.7e-21  Score=184.88  Aligned_cols=252  Identities=16%  Similarity=0.184  Sum_probs=158.2

Q ss_pred             cceEEEEeCCCCCHHHHhcC-CCCeEEEEcCccCCccchhHHhhCCcEEE---ecCCCCCCC---hhhHHHHHH--HHHH
Q 019081           55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVA---RIPGDVTGN---AASCAELTI--YLML  125 (346)
Q Consensus        55 ~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~---n~p~~~~~n---a~~vAE~~~--~~~l  125 (346)
                      ++|+++....++.++ ++.+ +++++|+....+.|..+++++.++||.+.   +.+... ++   -.++++.+-  +.++
T Consensus        65 ~ad~il~vk~p~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~-~~~~~l~~~s~~ag~~av~~  142 (369)
T 2eez_A           65 GAEMVVKVKEPLPEE-YGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPD-GTLPLLVPMSEVAGRMAPQV  142 (369)
T ss_dssp             TSSEEECSSCCCGGG-GGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTT-CCCTTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHH-HhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeecccccc-CCeeecccchHHHHHHHHHH
Confidence            789887555565444 6665 78999999999999999999999999997   555431 11   034455444  3332


Q ss_pred             HHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccc
Q 019081          126 GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI  205 (346)
Q Consensus       126 ~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~  205 (346)
                      + .+.+.....  .++.|... ..++.+++|+|+|.|.||+.+++.++++|++|+++|++..+.......   +.     
T Consensus       143 a-~~~l~~~~~--g~~~~~~~-~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~---~g-----  210 (369)
T 2eez_A          143 G-AQFLEKPKG--GRGVLLGG-VPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDV---FG-----  210 (369)
T ss_dssp             H-HHHTSGGGT--SCCCCTTC-BTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---TT-----
T ss_pred             H-HHHHHHhcC--CCceecCC-CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh---cC-----
Confidence            2 222221110  00112221 247899999999999999999999999999999999875431100000   00     


Q ss_pred             ccccccccCCcCCHHHHhhcCCEEEEeecCCc-cccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEE
Q 019081          206 IDDLVDEKGCHEDIFEFASKADVVVCCLSLNK-QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG  284 (346)
Q Consensus       206 ~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~-~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~  284 (346)
                       ...........+++++++.+|+|+.++|.+. .+..++.++.++.||+|+++||+|-.             .|   |+ 
T Consensus       211 -~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-  272 (369)
T 2eez_A          211 -GRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-  272 (369)
T ss_dssp             -TSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-----------------------
T ss_pred             -ceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-
Confidence             0000000023467788899999999999765 68889999999999999999999821             12   44 


Q ss_pred             EecCCCCCCCCCCCCCCCCceE---------EccCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCC
Q 019081          285 IDVAWTEPFDPNDPILKFKNVL---------ITPHVGGV--TEHSYRSMAKVVGDVALQLHAGTPLT  340 (346)
Q Consensus       285 lDV~~~EPl~~~~pL~~~~nvi---------iTPH~a~~--t~~~~~~~~~~~~~ni~~~~~g~~~~  340 (346)
                      +||+  ||.+.++|+|..+|+.         +|||+|+.  +.+.+..+.+.+.+++..+..++.+.
T Consensus       273 ~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~l~  337 (369)
T 2eez_A          273 VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAALL  337 (369)
T ss_dssp             ---------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHHHH
T ss_pred             CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhhhcChHHh
Confidence            9998  7777788999999999         88998874  56777888888888887777776543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.77  E-value=1.2e-18  Score=170.68  Aligned_cols=194  Identities=17%  Similarity=0.199  Sum_probs=133.4

Q ss_pred             cceEEEEeCCCCCHHHHhcC-CCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHH
Q 019081           55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE  133 (346)
Q Consensus        55 ~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~  133 (346)
                      ++|+++.... ..++.++.+ |++++|+..+.|+|++|++++.++||+|.+.        +.|+|++.++.|.+++.+..
T Consensus        72 ~adiil~vk~-p~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~~--------e~v~~~~~a~~l~~l~~~a~  142 (401)
T 1x13_A           72 QSEIILKVNA-PLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAM--------DSVPRISRAQSLDALSSMAN  142 (401)
T ss_dssp             SSSEEECSSC-CCHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEEG--------GGCCCSGGGGGGCHHHHHHH
T ss_pred             cCCeEEEeCC-CCHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEEe--------ehhhhhhhhcccchHHHHHH
Confidence            3888775433 357778886 7999999999999999999999999999753        34555554443333333222


Q ss_pred             H--HHHHHhccc--CCCC-c-----cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcc
Q 019081          134 M--RMAIEQKKL--GVPT-G-----ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN  203 (346)
Q Consensus       134 ~--~~~~~~~~~--~~~~-~-----~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~  203 (346)
                      .  ...++.+.|  .... +     .++.|++|+|+|+|.||..+++.++++|++|+++|++.........  .+.    
T Consensus       143 ~ag~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~--lGa----  216 (401)
T 1x13_A          143 IAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS--MGA----  216 (401)
T ss_dssp             HHHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHH--TTC----
T ss_pred             HHHHHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH--cCC----
Confidence            1  122222222  2111 1     1588999999999999999999999999999999997654211000  000    


Q ss_pred             cccccccc--c------cC------C-------cCCHHHHhhcCCEEEEe--ecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          204 GIIDDLVD--E------KG------C-------HEDIFEFASKADVVVCC--LSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       204 ~~~~~~~~--~------~~------~-------~~~l~ell~~aDiV~~~--lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                          ....  .      .+      .       ..++.++++.+|+|+.+  +|. ..+.++++++.++.||+|++|||+
T Consensus       217 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdv  291 (401)
T 1x13_A          217 ----EFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDL  291 (401)
T ss_dssp             ----EECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEET
T ss_pred             ----EEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEE
Confidence                0000  0      00      0       01377888999999999  554 347789999999999999999999


Q ss_pred             C--CCCCCCH
Q 019081          261 A--RGGLLDY  268 (346)
Q Consensus       261 s--Rg~~vd~  268 (346)
                      |  ||+.+++
T Consensus       292 a~~~Gg~v~~  301 (401)
T 1x13_A          292 AAQNGGNCEY  301 (401)
T ss_dssp             TGGGTCSBTT
T ss_pred             cCCCCCCcCc
Confidence            9  9887765

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.75  E-value=3.3e-18  Score=167.53  Aligned_cols=156  Identities=15%  Similarity=0.187  Sum_probs=112.3

Q ss_pred             cCccCCccc-hhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEec
Q 019081           83 FGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF  161 (346)
Q Consensus        83 ~~~G~d~id-~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~  161 (346)
                      .++|+..+. +....+.+|+|.|++..       +.++.+-........+....  .+.      .+.++.|++|||+|+
T Consensus       155 TttGv~rL~~~~~~g~L~iPVinvnds-------vtk~~~Dn~~Gt~~slldgi--~ra------tg~~L~GktVgIiG~  219 (436)
T 3h9u_A          155 TTTGVKNLYKRLQRGKLTIPAMNVNDS-------VTKSKFDNLYGCRESLVDGI--KRA------TDVMIAGKTACVCGY  219 (436)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTTS-------HHHHTTHHHHHHHHHHHHHH--HHH------HCCCCTTCEEEEECC
T ss_pred             cCcChHHHHHHHHcCCCCCceEeechh-------hhhhhhhccccchHHHHHHH--HHh------cCCcccCCEEEEEee
Confidence            356665542 33456789999998754       44443333332222211111  111      257899999999999


Q ss_pred             CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccC
Q 019081          162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG  241 (346)
Q Consensus       162 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~  241 (346)
                      |.||+.+|++|++||++|+++|+++.....                 .........++++++++||+|++    ++.|++
T Consensus       220 G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~-----------------A~~~G~~~~sL~eal~~ADVVil----t~gt~~  278 (436)
T 3h9u_A          220 GDVGKGCAAALRGFGARVVVTEVDPINALQ-----------------AAMEGYQVLLVEDVVEEAHIFVT----TTGNDD  278 (436)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSCHHHHHH-----------------HHHTTCEECCHHHHTTTCSEEEE----CSSCSC
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCChhhhHH-----------------HHHhCCeecCHHHHHhhCCEEEE----CCCCcC
Confidence            999999999999999999999986532100                 00111124589999999999996    567899


Q ss_pred             CCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHHH
Q 019081          242 IVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHY  274 (346)
Q Consensus       242 li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~a  274 (346)
                      +|+++.|++||+|++|||+|||.+ ||.++|.+.
T Consensus       279 iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          279 IITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             SBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             ccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            999999999999999999999998 999998764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.72  E-value=1.8e-17  Score=162.20  Aligned_cols=155  Identities=16%  Similarity=0.148  Sum_probs=110.7

Q ss_pred             cCccCCccc-hhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEec
Q 019081           83 FGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGF  161 (346)
Q Consensus        83 ~~~G~d~id-~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~  161 (346)
                      .++|+-++- +...-...+++.|+.+       ++..+-+-......+.+....  .+.      .+..+.||||||+|+
T Consensus       191 TtTGv~rL~~m~~~g~L~~PvinVnd-------s~tK~~fDn~yG~~eslvdgI--~Ra------tg~~L~GKTVgVIG~  255 (464)
T 3n58_A          191 TTTGVNRLYQLQKKGLLPFPAINVND-------SVTKSKFDNKYGCKESLVDGI--RRG------TDVMMAGKVAVVCGY  255 (464)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTT-------SHHHHTTHHHHHHHHHHHHHH--HHH------HCCCCTTCEEEEECC
T ss_pred             cccchHHHHHHHHcCCCCCCEEeecc-------HhhhhhhhhhhcchHHHHHHH--HHh------cCCcccCCEEEEECc
Confidence            355655442 2222345788888743       466665555554444333211  111      257899999999999


Q ss_pred             CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccC
Q 019081          162 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG  241 (346)
Q Consensus       162 G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~  241 (346)
                      |.||+.+|+++++|||+|+++|+++.....                 .........++++++++||+|+++    ..|++
T Consensus       256 G~IGr~vA~~lrafGa~Viv~d~dp~~a~~-----------------A~~~G~~vv~LeElL~~ADIVv~a----tgt~~  314 (464)
T 3n58_A          256 GDVGKGSAQSLAGAGARVKVTEVDPICALQ-----------------AAMDGFEVVTLDDAASTADIVVTT----TGNKD  314 (464)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSHHHHHH-----------------HHHTTCEECCHHHHGGGCSEEEEC----CSSSS
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCcchhhH-----------------HHhcCceeccHHHHHhhCCEEEEC----CCCcc
Confidence            999999999999999999999976432100                 000011235899999999999985    35789


Q ss_pred             CCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHH
Q 019081          242 IVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH  273 (346)
Q Consensus       242 li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~  273 (346)
                      +|+++.|++||+|++|||+|||.+ +|.++|.+
T Consensus       315 lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          315 VITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             SBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             ccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            999999999999999999999998 99988874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.71  E-value=5.5e-17  Score=158.11  Aligned_cols=208  Identities=13%  Similarity=0.157  Sum_probs=132.3

Q ss_pred             cccCcceEEEEeCCCC----CHHHHhcCC-CCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHH
Q 019081           51 DVIANYHLCVVKTMRL----DSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML  125 (346)
Q Consensus        51 ~~~~~~d~~i~~~~~~----~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l  125 (346)
                      +.+.++|+++....++    +++.++.++ ++++|+....+.|+.+++++.++||.+.+.... .   ..+++..+. +|
T Consensus        63 ~~~~~adiil~v~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~~-~---~~~~~~~l~-~l  137 (384)
T 1l7d_A           63 QALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELM-P---RISRAQSMD-IL  137 (384)
T ss_dssp             HHHSSCSEEEEEECCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGGC-C---CSGGGGGGC-HH
T ss_pred             hhhcCCCEEEEecCcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEeccc-c---ccccccccc-hh
Confidence            4467899888765666    788889886 699999999999999999999999999974211 1   111111222 22


Q ss_pred             HHHHhHHHHHHHHHhcccC--CCC-----c-cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccc
Q 019081          126 GLLRKQNEMRMAIEQKKLG--VPT-----G-ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS  197 (346)
Q Consensus       126 ~~~R~~~~~~~~~~~~~~~--~~~-----~-~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~  197 (346)
                      +..+.+. ....+..+.|.  ...     + .++.|++|+|+|+|.||+.+++.++++|++|+++|++..+......  .
T Consensus       138 ~~~a~~a-g~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~--~  214 (384)
T 1l7d_A          138 SSQSNLA-GYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES--L  214 (384)
T ss_dssp             HHHHHHH-HHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH--T
T ss_pred             hHHHHHH-HHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--c
Confidence            2222221 11222222221  100     1 3789999999999999999999999999999999987654211000  0


Q ss_pred             hhhhc---cccccccccc--cCC----------cCCHHHHhhcCCEEEEee--cCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          198 ALAVK---NGIIDDLVDE--KGC----------HEDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       198 ~~~~~---~~~~~~~~~~--~~~----------~~~l~ell~~aDiV~~~l--Plt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      +..+-   .....+....  +..          ...+.++++.+|+|+.++  |.+ .+.++++++.++.||+|+++||+
T Consensus       215 Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdv  293 (384)
T 1l7d_A          215 GGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDL  293 (384)
T ss_dssp             TCEECCC-----------------------CCHHHHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEET
T ss_pred             CCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEE
Confidence            00000   0000000000  000          012778889999999877  443 35678999999999999999999


Q ss_pred             C--CCCCCC
Q 019081          261 A--RGGLLD  267 (346)
Q Consensus       261 s--Rg~~vd  267 (346)
                      +  ||+.++
T Consensus       294 a~~~gg~~~  302 (384)
T 1l7d_A          294 AVEAGGNCP  302 (384)
T ss_dssp             TGGGTCSST
T ss_pred             ecCCCCCee
Confidence            9  877543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.69  E-value=5.5e-19  Score=173.38  Aligned_cols=214  Identities=16%  Similarity=0.266  Sum_probs=156.6

Q ss_pred             CCCeEEEEcCccCCccchhHHh-----hCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC----
Q 019081           75 NQMKLIMQFGVGLEGVDINAAT-----RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----  145 (346)
Q Consensus        75 ~~Lk~I~~~~~G~d~id~~~~~-----~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~----  145 (346)
                      +.+++|...++|+|++++.++.     ++++.+++.+|..    ..++++.+..++.+.|++...... ..+.|..    
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~----~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~a  154 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTL----DEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAA  154 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCC----CHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCc----hHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHH
Confidence            4688999999999999999887     8899999988862    578999999999999988654322 1223321    


Q ss_pred             -CC-c---cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCH
Q 019081          146 -PT-G---ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI  219 (346)
Q Consensus       146 -~~-~---~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  219 (346)
                       .. .   .++.|++|+|+|+|.||+.+++.++.+|+ +|+++||+..+.....             ..+........++
T Consensus       155 v~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la-------------~~~g~~~~~~~~l  221 (404)
T 1gpj_A          155 VELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELA-------------RDLGGEAVRFDEL  221 (404)
T ss_dssp             HHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-------------HHHTCEECCGGGH
T ss_pred             HHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-------------HHcCCceecHHhH
Confidence             00 1   14789999999999999999999999999 9999998754310000             0000001123468


Q ss_pred             HHHhhcCCEEEEeecCCccccCCCCHHHHcc--CC----CCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCC
Q 019081          220 FEFASKADVVVCCLSLNKQTAGIVNKSFLSS--MK----KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF  293 (346)
Q Consensus       220 ~ell~~aDiV~~~lPlt~~T~~li~~~~l~~--mk----~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl  293 (346)
                      .+++..+|+|+.|+|.   +..+++++.++.  ||    ++.++||++                             +|.
T Consensus       222 ~~~l~~aDvVi~at~~---~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~  269 (404)
T 1gpj_A          222 VDHLARSDVVVSATAA---PHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPR  269 (404)
T ss_dssp             HHHHHTCSEEEECCSS---SSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSC
T ss_pred             HHHhcCCCEEEEccCC---CCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCC
Confidence            8889999999999764   456788888877  43    456777765                             476


Q ss_pred             CCCCCCCCCCceEE--ccCCCCCcHHHHH----------HHHHHHHHHHHHHHcCCC
Q 019081          294 DPNDPILKFKNVLI--TPHVGGVTEHSYR----------SMAKVVGDVALQLHAGTP  338 (346)
Q Consensus       294 ~~~~pL~~~~nvii--TPH~a~~t~~~~~----------~~~~~~~~ni~~~~~g~~  338 (346)
                      +.+++++++|||++  +||+++.+.+...          .+....++++..|..+++
T Consensus       270 ~i~~~l~~l~~v~l~d~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~  326 (404)
T 1gpj_A          270 DVEEGVENIEDVEVRTIDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLK  326 (404)
T ss_dssp             SBCTTGGGSTTEEEEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccCCeEEEeHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            66789999999999  9999998887654          455666677777766543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.65  E-value=4.3e-16  Score=152.30  Aligned_cols=104  Identities=19%  Similarity=0.337  Sum_probs=85.6

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      +..+.|++|+|+|+|.||+.+|++|++||++|+++|+++.....                 .........++++++++||
T Consensus       215 ~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~-----------------A~~~G~~v~~Leeal~~AD  277 (435)
T 3gvp_A          215 DMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQ-----------------ACMDGFRLVKLNEVIRQVD  277 (435)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-----------------HHHTTCEECCHHHHTTTCS
T ss_pred             CceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHH-----------------HHHcCCEeccHHHHHhcCC
Confidence            46799999999999999999999999999999999986532100                 0000012458999999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHH
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIA  272 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~  272 (346)
                      +|+++    +.|+++|+++.|+.||+|++|||+|||.+ +|.++|.
T Consensus       278 IVi~a----tgt~~lI~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          278 IVITC----TGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             EEEEC----SSCSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             EEEEC----CCCcccCCHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            99994    56889999999999999999999999998 7876663

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.33  E-value=6.9e-12  Score=120.43  Aligned_cols=110  Identities=19%  Similarity=0.228  Sum_probs=88.5

Q ss_pred             cc-ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhh-
Q 019081          148 GE-TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-  224 (346)
Q Consensus       148 ~~-~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-  224 (346)
                      |. +|.||||+|+|+|+||+.+|++|+.+|++|+++|++..+.                  +.....+ ...+.++++. 
T Consensus       169 G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~------------------~~a~~~ga~~v~~~ell~~  230 (355)
T 1c1d_A          169 GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERV------------------AHAVALGHTAVALEDVLST  230 (355)
T ss_dssp             TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH------------------HHHHHTTCEECCGGGGGGC
T ss_pred             CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHH------------------HHHHhcCCEEeChHHhhcC
Confidence            44 7999999999999999999999999999999999763210                  0111111 2346678887 


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      +||+++.     ..|.++|+.+.++.|| ..+++|.+|+++.++++ .++|+++.|..
T Consensus       231 ~~DIliP-----~A~~~~I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIlv  281 (355)
T 1c1d_A          231 PCDVFAP-----CAMGGVITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGILY  281 (355)
T ss_dssp             CCSEEEE-----CSCSCCBCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCEE
T ss_pred             ccceecH-----hHHHhhcCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEEE
Confidence            9999974     3688999999999998 78999999999999777 69999998754

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.27  E-value=3.2e-12  Score=120.21  Aligned_cols=115  Identities=15%  Similarity=0.209  Sum_probs=91.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+|.||..+|++|...|++|++|||+..+..                 .+..... ...++.|+++.||+|+++
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~-----------------~l~~~G~~~~~s~~e~~~~~dvvi~~   68 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAE-----------------PLTKLGATVVENAIDAITPGGIVFSV   68 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------C-----------------TTTTTTCEECSSGGGGCCTTCEEEEC
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHH-----------------HHHHcCCeEeCCHHHHHhcCCceeee
Confidence            5799999999999999999999999999999875421                 1211111 346889999999999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      +|..+.++.++....+..+++|.++|++|....-+.+.+.+.+++..+.  .+|.
T Consensus        69 l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda  121 (297)
T 4gbj_A           69 LADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA  121 (297)
T ss_dssp             CSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             ccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence            9987777778888889999999999999999999999999999988775  5665

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.26  E-value=1.9e-12  Score=122.06  Aligned_cols=115  Identities=19%  Similarity=0.258  Sum_probs=93.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++||+||+|.||..+|++|..-|++|++|||+..+.                 +.+..... ...++.|+.+.||+|++|
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~-----------------~~l~~~Ga~~a~s~~e~~~~~dvv~~~   66 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAV-----------------DGLVAAGASAARSARDAVQGADVVISM   66 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHH-----------------HHHHHTTCEECSSHHHHHTTCSEEEEC
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHH-----------------HHHHHcCCEEcCCHHHHHhcCCceeec
Confidence            589999999999999999999999999999976542                 11222212 346899999999999999


Q ss_pred             ecCCccccCCCCH--HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          233 LSLNKQTAGIVNK--SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       233 lPlt~~T~~li~~--~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      +|..+.++.++..  ..++.+++|.++||+|....-+...+.+.+++..+.  .+|.
T Consensus        67 l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           67 LPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             CSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             CCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            9988887776632  367889999999999999999999999999988775  5775

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.26  E-value=1.3e-11  Score=114.48  Aligned_cols=144  Identities=21%  Similarity=0.200  Sum_probs=100.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh-cC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS-KA  226 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~-~a  226 (346)
                      ++|||||+|.||..+|+.++..|+  +|+++|++......                  ....+    ...+++++++ +|
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~a   63 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK------------------AVDLGIIDEGTTSIAKVEDFSP   63 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH------------------HHHTTSCSEEESCGGGGGGTCC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHH------------------HHHCCCcccccCCHHHHhcCCC
Confidence            489999999999999999999898  99999987543110                  00111    1246778888 99


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC---CCCCCCCCCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE---PFDPNDPILKFK  303 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E---Pl~~~~pL~~~~  303 (346)
                      |+|++++|.. .+..++. +....+++++++++++++.....+.+.+.+.++-+.+  --++..|   |....++++...
T Consensus        64 DvVilavp~~-~~~~v~~-~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~  139 (281)
T 2g5c_A           64 DFVMLSSPVR-TFREIAK-KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGK  139 (281)
T ss_dssp             SEEEECSCHH-HHHHHHH-HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTC
T ss_pred             CEEEEcCCHH-HHHHHHH-HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCC
Confidence            9999999954 4555553 3455689999999999888666677888887642211  2234333   333455778888


Q ss_pred             ceEEccCCCCCcHHHHH
Q 019081          304 NVLITPHVGGVTEHSYR  320 (346)
Q Consensus       304 nviiTPH~a~~t~~~~~  320 (346)
                      +++++||.++. .+..+
T Consensus       140 ~~~~~~~~~~~-~~~~~  155 (281)
T 2g5c_A          140 KVILTPTKKTD-KKRLK  155 (281)
T ss_dssp             EEEECCCSSSC-HHHHH
T ss_pred             CEEEecCCCCC-HHHHH
Confidence            89999997654 34333

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.26  E-value=1.9e-11  Score=115.86  Aligned_cols=154  Identities=21%  Similarity=0.185  Sum_probs=100.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHH-HhhcC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE-FASKA  226 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~a  226 (346)
                      ++.-++|||||+|.||+.+|+.++..|+  +|++||++........        ..+    ..+.  ...++++ ++++|
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~--------~~G----~~~~--~~~~~~~~~~~~a   95 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV--------DLG----IIDE--GTTSIAKVEDFSP   95 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH--------HTT----SCSE--EESCTTGGGGGCC
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH--------HCC----Ccch--hcCCHHHHhhccC
Confidence            3445899999999999999999999999  9999998754311000        000    0000  1256778 89999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC---CCCCCCCCCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE---PFDPNDPILKFK  303 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E---Pl~~~~pL~~~~  303 (346)
                      |+|++++|.. .+..++ ++....+++++++++++.......+++.+.+.. ++.+. -=++..|   |..+...|+.-.
T Consensus        96 DvVilavp~~-~~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~-hPm~G~e~sG~~~A~~~Lf~g~  171 (314)
T 3ggo_A           96 DFVMLSSPVR-TFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGG-HPIAGTEKSGVEYSLDNLYEGK  171 (314)
T ss_dssp             SEEEECSCGG-GHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECE-EECCCCCCCSGGGCCTTTTTTC
T ss_pred             CEEEEeCCHH-HHHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEec-CcccCCcccchhhhhhhhhcCC
Confidence            9999999965 344444 455667999999999987665445666666654 32221 1133332   222344677778


Q ss_pred             ceEEccCCCCCcHHHHHHH
Q 019081          304 NVLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       304 nviiTPH~a~~t~~~~~~~  322 (346)
                      .+++||+-+ .+++..+++
T Consensus       172 ~~il~~~~~-~~~~~~~~v  189 (314)
T 3ggo_A          172 KVILTPTKK-TDKKRLKLV  189 (314)
T ss_dssp             EEEECCCTT-SCHHHHHHH
T ss_pred             EEEEEeCCC-CCHHHHHHH
Confidence            899999843 344544443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.25  E-value=2.9e-12  Score=120.80  Aligned_cols=120  Identities=15%  Similarity=0.109  Sum_probs=94.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (346)
                      .++..++|||||+|.||+.+|+.|...|++|++|||+..+..                 .+..... ...++.+++++||
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~-----------------~~~~~g~~~~~~~~e~~~~aD   67 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAA-----------------ALVAAGAHLCESVKAALSASP   67 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHH-----------------HHHHHTCEECSSHHHHHHHSS
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHHCCCeecCCHHHHHhcCC
Confidence            345678999999999999999999999999999998764311                 1111111 2468999999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      +|++++|....++.++..+.+..+++|.++||+++....+.+.+.+.+++..+.  .+|.
T Consensus        68 vVi~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~--~vda  125 (306)
T 3l6d_A           68 ATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH--YVKG  125 (306)
T ss_dssp             EEEECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE--EEEE
T ss_pred             EEEEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe--EEec
Confidence            999999976667777753345667899999999999999999999999886654  4554

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.25  E-value=1.2e-10  Score=113.44  Aligned_cols=208  Identities=21%  Similarity=0.206  Sum_probs=114.7

Q ss_pred             cCcceEEEEeCCCCCHHHHhcC-CCCeEEEEcCccCCccchhHHhhCCcEEEe---cCCCCCCChhhHHHHHHHHHHHHH
Q 019081           53 IANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVAR---IPGDVTGNAASCAELTIYLMLGLL  128 (346)
Q Consensus        53 ~~~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n---~p~~~~~na~~vAE~~~~~~l~~~  128 (346)
                      +.++|+++.-..+ +++-++.+ ++--+++..-..-|.=-++.+.++||...-   .|.. + .+.++-  ++.-|-.+.
T Consensus        88 ~~~adiIlkVk~p-~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~r~-~-ra~~l~--~ls~~s~iA  162 (405)
T 4dio_A           88 AKTADVILKVRRP-SAQEISGYRSGAVVIAIMDPYGNEEAISAMAGAGLTTFAMELMPRI-T-RAQSMD--VLSSQANLA  162 (405)
T ss_dssp             GGGCSEEEEEECC-CTTTGGGSCTTCEEEEECCCTTCHHHHHHHHHTTCEEEEGGGSCCS-G-GGGGGC--HHHHHHHHH
T ss_pred             hccCCEEEEeCCC-ChhHHhhcCCCcEEEEEeccccCHHHHHHHHHCCCeEEEeeccccc-c-ccCccc--eecchhHHH
Confidence            4567877653333 33334444 455566654443344445678889988842   2221 0 011110  111111111


Q ss_pred             HhHHHHHHHHHhcc-cCCCC--ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccc
Q 019081          129 RKQNEMRMAIEQKK-LGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI  205 (346)
Q Consensus       129 R~~~~~~~~~~~~~-~~~~~--~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~  205 (346)
                      -+..-......-++ +....  ...+.+.+|+|+|+|.||..+|+.++++|++|+++|++..+......  .+..+..-.
T Consensus       163 Gy~Av~~aa~~l~~~~~~l~t~~g~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~--~G~~~~~~~  240 (405)
T 4dio_A          163 GYQAVIDAAYEYDRALPMMMTAAGTVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS--LGAKFIAVE  240 (405)
T ss_dssp             HHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH--TTCEECCCC
T ss_pred             HHHHHHHHHHHhHhhhchhhccCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH--cCCceeecc
Confidence            11000000000011 11110  13578999999999999999999999999999999998654211100  000000000


Q ss_pred             c---ccc--ccccCC----------cCCHHHHhhcCCEEEEee--cCCccccCCCCHHHHccCCCCcEEEEcC--CCCCC
Q 019081          206 I---DDL--VDEKGC----------HEDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLL  266 (346)
Q Consensus       206 ~---~~~--~~~~~~----------~~~l~ell~~aDiV~~~l--Plt~~T~~li~~~~l~~mk~gailIN~s--Rg~~v  266 (346)
                      .   .+.  ...+..          ..++.+++++||+|+.++  |. ..+..+++++.++.||||++|||+|  +|+.+
T Consensus       241 ~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg-~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~  319 (405)
T 4dio_A          241 DEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVITTALIPG-RPAPRLVTREMLDSMKPGSVVVDLAVERGGNI  319 (405)
T ss_dssp             C-----------------CHHHHHHHHHHHHHHHTCSEEEECCCCSS-SCCCCCBCHHHHTTSCTTCEEEETTGGGTCSB
T ss_pred             cccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCC-CCCCEEecHHHHhcCCCCCEEEEEeCCCCCCc
Confidence            0   000  000000          136889999999999875  53 3578899999999999999999998  78765


Q ss_pred             CH
Q 019081          267 DY  268 (346)
Q Consensus       267 d~  268 (346)
                      +.
T Consensus       320 e~  321 (405)
T 4dio_A          320 EG  321 (405)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.25  E-value=4.4e-12  Score=119.70  Aligned_cols=122  Identities=16%  Similarity=0.122  Sum_probs=90.9

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHH
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFE  221 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~e  221 (346)
                      |.....+...-++|||||+|.||..+|+.|...|++|++|||+.....                 .+..... ...++++
T Consensus        11 ~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~-----------------~l~~~g~~~~~~~~~   73 (310)
T 3doj_A           11 SSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCD-----------------ELVEHGASVCESPAE   73 (310)
T ss_dssp             -------CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGH-----------------HHHHTTCEECSSHHH
T ss_pred             ccccCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHH-----------------HHHHCCCeEcCCHHH
Confidence            333344556668999999999999999999999999999999765421                 1111111 2468999


Q ss_pred             HhhcCCEEEEeecCCccccCCC--CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          222 FASKADVVVCCLSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       222 ll~~aDiV~~~lPlt~~T~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ++++||+|++++|....++.++  ..+.+..+++|.++||+++......+.+.+.+.+..+.
T Consensus        74 ~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           74 VIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             HHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            9999999999999766666655  24556779999999999999988889999999876554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.21  E-value=4.1e-11  Score=111.61  Aligned_cols=157  Identities=13%  Similarity=0.120  Sum_probs=101.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc---cchhhhcc--cc----ccccccccCCcCCHHHHhh
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKN--GI----IDDLVDEKGCHEDIFEFAS  224 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~---~~~~~~~~--~~----~~~~~~~~~~~~~l~ell~  224 (346)
                      ++|+|||+|.||..+|+.+...|++|++||++..........   .....++.  +.    .+..........+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            689999999999999999999999999999876432111000   00000000  00    0000000012368889999


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCc
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  304 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  304 (346)
                      +||+|+.++|.+.+....+-++....+++++++++.+.+  +...++.+++... -...++..|.        |.+..+.
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~--------p~~~~~l  153 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN--------HVWVNNT  153 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS--------STTTSCE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC--------CcccCce
Confidence            999999999987666666666777789999999955433  4567888887543 2345566552        4567888


Q ss_pred             eEEccCCCCCcHHHHHHH
Q 019081          305 VLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       305 viiTPH~a~~t~~~~~~~  322 (346)
                      +.++||- ..+++..+++
T Consensus       154 vevv~~~-~t~~~~~~~~  170 (283)
T 4e12_A          154 AEVMGTT-KTDPEVYQQV  170 (283)
T ss_dssp             EEEEECT-TSCHHHHHHH
T ss_pred             EEEEeCC-CCCHHHHHHH
Confidence            9999984 3344554443

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.20  E-value=1.4e-11  Score=115.73  Aligned_cols=137  Identities=17%  Similarity=0.130  Sum_probs=89.1

Q ss_pred             HHHHHHHhcccCCCCccccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc
Q 019081          133 EMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD  211 (346)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (346)
                      ++...++++.|.....   ..++||||| +|.||..+|+.++..|++|+++|++..                        
T Consensus         4 ~~~~~~~~~~~~~~~~---~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~------------------------   56 (298)
T 2pv7_A            4 ESYANENQFGFKTINS---DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW------------------------   56 (298)
T ss_dssp             ---------CCCCSCT---TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG------------------------
T ss_pred             hHHhhhhccCccccCC---CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc------------------------
Confidence            3445566677854321   356899999 999999999999999999999997532                        


Q ss_pred             ccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC
Q 019081          212 EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE  291 (346)
Q Consensus       212 ~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  291 (346)
                           .+..+++++||+|++++|.. .+..++. +....+++++++++++.......+++.+.+   ..     ++....
T Consensus        57 -----~~~~~~~~~aDvVilavp~~-~~~~vl~-~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~-----~~v~~h  121 (298)
T 2pv7_A           57 -----AVAESILANADVVIVSVPIN-LTLETIE-RLKPYLTENMLLADLTSVKREPLAKMLEVH---TG-----AVLGLH  121 (298)
T ss_dssp             -----GGHHHHHTTCSEEEECSCGG-GHHHHHH-HHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SS-----EEEEEE
T ss_pred             -----cCHHHHhcCCCEEEEeCCHH-HHHHHHH-HHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CC-----CEEeeC
Confidence                 14567889999999999964 4666653 344568999999999876543334444332   11     233333


Q ss_pred             CC-CCCCCCCCCCceEEccCC
Q 019081          292 PF-DPNDPILKFKNVLITPHV  311 (346)
Q Consensus       292 Pl-~~~~pL~~~~nviiTPH~  311 (346)
                      |. .++.+++.-.++++|||-
T Consensus       122 P~~g~~~~~~~g~~~~l~~~~  142 (298)
T 2pv7_A          122 PMFGADIASMAKQVVVRCDGR  142 (298)
T ss_dssp             ECSCTTCSCCTTCEEEEEEEE
T ss_pred             CCCCCCchhhcCCeEEEecCC
Confidence            43 123356666689999974

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.20  E-value=2.9e-11  Score=116.92  Aligned_cols=198  Identities=18%  Similarity=0.134  Sum_probs=113.4

Q ss_pred             ceEEEEeCCCCCHHHHhcC-CCCeEEEEcCccCCccchhHHhhCCcEEEe---cCCCCCCChh------hHHHHHHHHHH
Q 019081           56 YHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVAR---IPGDVTGNAA------SCAELTIYLML  125 (346)
Q Consensus        56 ~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n---~p~~~~~na~------~vAE~~~~~~l  125 (346)
                      +|+++.- ..++++-++.+ ++--+++..-...|.=-++.+.++||...-   .|.. + .+.      +++|.+=.   
T Consensus        85 adiIlkV-k~p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~-~-~~~~l~~l~~~s~iAGy---  158 (381)
T 3p2y_A           85 ADVVVKV-NPPTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRI-S-RAQTMDALSSQANVAGY---  158 (381)
T ss_dssp             SSEEECS-SCCCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSS-G-GGGGGCHHHHHHHHHHH---
T ss_pred             CCEEEEe-CCCChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccc-c-ccccceeecchhHHHHH---
Confidence            7876643 33455556665 455555554444444445778889998752   2211 0 011      12222211   


Q ss_pred             HHHHhHHHHHHHHHhccc-CCC--CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhc
Q 019081          126 GLLRKQNEMRMAIEQKKL-GVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK  202 (346)
Q Consensus       126 ~~~R~~~~~~~~~~~~~~-~~~--~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~  202 (346)
                         +-....  ...-++. ...  ....+.+++|+|+|+|.||..+|+.++++|++|+++|++..+......  .+..+.
T Consensus       159 ---~Av~~a--a~~l~~~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~--lGa~~~  231 (381)
T 3p2y_A          159 ---KAVLLG--ASLSTRFVPMLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS--VGAQWL  231 (381)
T ss_dssp             ---HHHHHH--HHHCSSCSSCEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH--TTCEEC
T ss_pred             ---HHHHHH--HHHhhhhhhhhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--cCCeEE
Confidence               111110  0000111 100  123578999999999999999999999999999999998654211100  000000


Q ss_pred             ccccc-cccccc----------CCcCCHHHHhhcCCEEEEee--cCCccccCCCCHHHHccCCCCcEEEEcC--CCCCCC
Q 019081          203 NGIID-DLVDEK----------GCHEDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLLD  267 (346)
Q Consensus       203 ~~~~~-~~~~~~----------~~~~~l~ell~~aDiV~~~l--Plt~~T~~li~~~~l~~mk~gailIN~s--Rg~~vd  267 (346)
                      .-..+ .....+          ....++.+++++||+|+.++  |. ..+..+++++.++.||||++|||+|  +|+.+.
T Consensus       232 ~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e  310 (381)
T 3p2y_A          232 DLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE  310 (381)
T ss_dssp             CCC-------------CHHHHHHHHHHHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred             eccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence            00000 000000          01236789999999999875  54 3577899999999999999999998  777654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.19  E-value=4.8e-12  Score=120.02  Aligned_cols=115  Identities=23%  Similarity=0.271  Sum_probs=91.2

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  228 (346)
                      ....++|||||+|.||+.+|+.|...|++|++|||+..+..                 .+..... ...++++++++||+
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~-----------------~l~~~g~~~~~~~~e~~~~aDv   90 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAA-----------------SLAALGATIHEQARAAARDADI   90 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHTTTCEEESSHHHHHTTCSE
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHH-----------------HHHHCCCEeeCCHHHHHhcCCE
Confidence            34567999999999999999999999999999999754311                 1111111 23689999999999


Q ss_pred             EEEeecCCccccCCCCH-HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          229 VVCCLSLNKQTAGIVNK-SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~-~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      |++++|....++.++.. +.+..+++|.++||++++...+.+.+.+.+++..+.
T Consensus        91 Vi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  144 (320)
T 4dll_A           91 VVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA  144 (320)
T ss_dssp             EEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE
Confidence            99999976666666543 566679999999999999999999999999887664

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.19  E-value=1.2e-11  Score=115.96  Aligned_cols=109  Identities=15%  Similarity=0.206  Sum_probs=88.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+|.||+.+|+.|...|++|++||++..+...                 +..... ...+++++++ ||+|+++
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-----------------~~~~g~~~~~~~~~~~~-aDvvi~~   77 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTP-----------------LAEAGATLADSVADVAA-ADLIHIT   77 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHH-----------------HHHTTCEECSSHHHHTT-SSEEEEC
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHH-----------------HHHCCCEEcCCHHHHHh-CCEEEEE
Confidence            58999999999999999999999999999997654211                 111111 2368999999 9999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +|....++.++ .+....+++|.++||+++......+.+.+.+.+..+.
T Consensus        78 vp~~~~~~~v~-~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  125 (296)
T 3qha_A           78 VLDDAQVREVV-GELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIH  125 (296)
T ss_dssp             CSSHHHHHHHH-HHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE
T ss_pred             CCChHHHHHHH-HHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE
Confidence            99766677666 6677889999999999999998899999999876554

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.18  E-value=2.5e-11  Score=117.09  Aligned_cols=120  Identities=14%  Similarity=0.187  Sum_probs=94.5

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcC---
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA---  226 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a---  226 (346)
                      +.+++|||||+|.||..+|+.|...|++|.+|||+.....                 .+..... ...+++++++.|   
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~-----------------~l~~~g~~~~~s~~e~~~~a~~~   82 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQ-----------------ALEREGIAGARSIEEFCAKLVKP   82 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHTTTCBCCSSHHHHHHHSCSS
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHH-----------------HHHHCCCEEeCCHHHHHhcCCCC
Confidence            4578999999999999999999999999999999754311                 1111111 346899999999   


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  289 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  289 (346)
                      |+|++++|.. .++.++ .+.+..+++|.++|+++++...+...+.+.+++..+......|+.
T Consensus        83 DvVi~~vp~~-~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsG  143 (358)
T 4e21_A           83 RVVWLMVPAA-VVDSML-QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSG  143 (358)
T ss_dssp             CEEEECSCGG-GHHHHH-HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             CEEEEeCCHH-HHHHHH-HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCC
Confidence            9999999976 777766 566778999999999999999999999999998877654444543

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.16  E-value=1.6e-11  Score=114.42  Aligned_cols=111  Identities=15%  Similarity=0.132  Sum_probs=88.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+|.||+.+|+.|...|++|++|||+..+..                 .+..... ...++++++++||+|+++
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~-----------------~~~~~g~~~~~~~~~~~~~aDvvi~~   64 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAE-----------------ELAALGAERAATPCEVVESCPVTFAM   64 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGH-----------------HHHHTTCEECSSHHHHHHHCSEEEEC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHCCCeecCCHHHHHhcCCEEEEE
Confidence            5899999999999999999999999999999765421                 1111111 246899999999999999


Q ss_pred             ecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          233 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       233 lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +|....++.++.  .+....+++|.++||+++....+.+.+.+.+++..+.
T Consensus        65 vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           65 LADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             cCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            996666666652  4556779999999999999988889999999886554

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.16  E-value=2.9e-11  Score=111.37  Aligned_cols=179  Identities=17%  Similarity=0.147  Sum_probs=120.9

Q ss_pred             CCCCCcccccCcc----eEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHHH
Q 019081           44 VPISDVPDVIANY----HLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAEL  119 (346)
Q Consensus        44 ~~~~~~~~~~~~~----d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~  119 (346)
                      .+.+++.+.+.+.    .++.+ +.++.++++..++++.-++....|+|.++.    +.|-    .+|+   |...    
T Consensus        38 ~~~~~l~~~i~~l~~~~~G~~v-t~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g~----~~g~---ntd~----  101 (263)
T 2d5c_A           38 TPLEALPGRLKEVRRAFRGVNL-TLPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEGR----LFGF---NTDA----  101 (263)
T ss_dssp             CCGGGHHHHHHHHHHHCSEEEE-CTTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETTE----EEEE---CCHH----
T ss_pred             CCHHHHHHHHHhccccCceEEE-cccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCCe----EEEe---CCCH----
Confidence            3455665555442    33322 458889999999999999999999999975    3442    2233   3332    


Q ss_pred             HHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchh
Q 019081          120 TIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL  199 (346)
Q Consensus       120 ~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~  199 (346)
                       .+++.++.|                 .+.++.| +++|||+|.+|+++++.|...|++|.++||+..+..         
T Consensus       102 -~g~~~~l~~-----------------~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~---------  153 (263)
T 2d5c_A          102 -PGFLEALKA-----------------GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRAL---------  153 (263)
T ss_dssp             -HHHHHHHHH-----------------TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHH---------
T ss_pred             -HHHHHHHHH-----------------hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH---------
Confidence             233444332                 1346889 999999999999999999999999999998753311         


Q ss_pred             hhccccccccccccC-CcCCHHHHhhcCCEEEEeecCCc--cccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          200 AVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNK--QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       200 ~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lPlt~--~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                              .+....+ ...+++++ +++|+|++++|...  .+...+.   .+.+++|+++++++.+.. +. .|.++++
T Consensus       154 --------~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~  219 (263)
T 2d5c_A          154 --------ALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAK  219 (263)
T ss_dssp             --------HHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHH
T ss_pred             --------HHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHH
Confidence                    0111111 12467788 99999999999763  3334554   456899999999998743 44 4888777


Q ss_pred             hCCC
Q 019081          277 CGHL  280 (346)
Q Consensus       277 ~g~i  280 (346)
                      +..+
T Consensus       220 ~~g~  223 (263)
T 2d5c_A          220 AKGL  223 (263)
T ss_dssp             HTTC
T ss_pred             HCcC
Confidence            6443

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.14  E-value=5.2e-11  Score=112.86  Aligned_cols=115  Identities=16%  Similarity=0.145  Sum_probs=86.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcC-CHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE-DIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell~~aDiV~~  231 (346)
                      ++|||||+|.||..+|+.|...| ++|++||++..........          ...... .+... ++.+++++||+|++
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~----------~~~~~~-~g~~~~s~~e~~~~aDvVi~   93 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGAL----------RARAAE-LGVEPLDDVAGIACADVVLS   93 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHH----------HHHHHH-TTCEEESSGGGGGGCSEEEE
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHH----------HHHHHH-CCCCCCCHHHHHhcCCEEEE
Confidence            68999999999999999999999 9999999875211000000          000101 11134 77889999999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ++|.....+.+  .+....+++|.++||+++......+.+.+.+++..+.
T Consensus        94 avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~  141 (317)
T 4ezb_A           94 LVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS  141 (317)
T ss_dssp             CCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCE
T ss_pred             ecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            99976555443  5667789999999999999988999999999876554

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.14  E-value=1.5e-10  Score=115.06  Aligned_cols=96  Identities=22%  Similarity=0.292  Sum_probs=77.1

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      +..+.||+++|+|+|.||+.+|++|+++|++|+++|++......                 .........+++++++.+|
T Consensus       260 g~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~-----------------Aa~~g~dv~~lee~~~~aD  322 (488)
T 3ond_A          260 DVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQ-----------------ATMEGLQVLTLEDVVSEAD  322 (488)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-----------------HHHTTCEECCGGGTTTTCS
T ss_pred             CCcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-----------------HHHhCCccCCHHHHHHhcC
Confidence            45799999999999999999999999999999999986533110                 0011112357888999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +|+.+    ..+.++++.+.|+.||++++++|++|+.
T Consensus       323 vVi~a----tG~~~vl~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          323 IFVTT----TGNKDIIMLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             EEEEC----SSCSCSBCHHHHTTSCTTEEEEESSSTT
T ss_pred             EEEeC----CCChhhhhHHHHHhcCCCeEEEEcCCCC
Confidence            99964    4567899999999999999999999983

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.13  E-value=1.6e-11  Score=114.34  Aligned_cols=111  Identities=17%  Similarity=0.141  Sum_probs=87.7

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+|.||..+|+.|...|++|++|||+..+..                 .+..... ...++++++++||+|+++
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~-----------------~~~~~g~~~~~~~~~~~~~advvi~~   64 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCA-----------------PLVALGARQASSPAEVCAACDITIAM   64 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGH-----------------HHHHHTCEECSCHHHHHHHCSEEEEC
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHCCCeecCCHHHHHHcCCEEEEE
Confidence            4799999999999999999999999999999765421                 1111111 236899999999999999


Q ss_pred             ecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          233 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       233 lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +|....++.++.  .+.+..+++|.++||++++.....+.+.+.+.+..+.
T Consensus        65 v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             CSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             cCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            997656666552  3456778999999999999998889999998876554

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.13  E-value=7.1e-11  Score=111.60  Aligned_cols=123  Identities=17%  Similarity=0.205  Sum_probs=89.1

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC-ccccccccccchhhhccccccccccccC--CcCCHHHHhhc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW-ASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  225 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  225 (346)
                      ....++|||||+|.||..+|+.|...|+ +|++||++. ....                 +.....+  ...++.+++++
T Consensus        21 ~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~-----------------~~~~~~g~~~~~~~~e~~~~   83 (312)
T 3qsg_A           21 QSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWR-----------------PRAEELGVSCKASVAEVAGE   83 (312)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHH-----------------HHHHHTTCEECSCHHHHHHH
T ss_pred             cCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHH-----------------HHHHHCCCEEeCCHHHHHhc
Confidence            3445799999999999999999999999 999999963 1110                 0011111  23688999999


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe--cCCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID--VAWTE  291 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD--V~~~E  291 (346)
                      ||+|++++|.....+ .+ .+....+++|.++||++........++.+.+.+..+....+|  |+..+
T Consensus        84 aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~  149 (312)
T 3qsg_A           84 CDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAV  149 (312)
T ss_dssp             CSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCS
T ss_pred             CCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCc
Confidence            999999999765544 22 566778999999999999999899999999887622223455  45433

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.10  E-value=1.8e-11  Score=115.08  Aligned_cols=112  Identities=21%  Similarity=0.202  Sum_probs=87.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-C-cCCHHHHhhcCCEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C-HEDIFEFASKADVVV  230 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~ell~~aDiV~  230 (346)
                      .++|||||+|.||..+|+.|...|++|++|||+.....                 .+..... . ..++++++++||+|+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~-----------------~~~~~g~~~~~~~~~e~~~~aDvvi   69 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACA-----------------NLLAEGACGAAASAREFAGVVDALV   69 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHHTTCSEEESSSTTTTTTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHH-----------------HHHHcCCccccCCHHHHHhcCCEEE
Confidence            46899999999999999999999999999998754311                 0111111 1 357888899999999


Q ss_pred             EeecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          231 CCLSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       231 ~~lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +++|....++.++.  ++.+..+++|.++||+++......+.+.+.+.+..+.
T Consensus        70 ~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           70 ILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             ECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             EECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            99997666666552  3455778999999999999988888999998876553

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.06  E-value=1.2e-11  Score=118.45  Aligned_cols=136  Identities=22%  Similarity=0.239  Sum_probs=91.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (346)
                      ..+.+++|||||+|.||+++|+.|+..|++|++++++......                 .....+ ...++++++++||
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~-----------------~a~~~G~~~~~~~e~~~~aD   74 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVA-----------------KAEAHGLKVADVKTAVAAAD   74 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHH-----------------HHHHTTCEEECHHHHHHTCS
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHH-----------------HHHHCCCEEccHHHHHhcCC
Confidence            4678899999999999999999999999999999987533100                 011111 1237889999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe-EEEEecCCCCCCCCCCC---CCC--
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG-GLGIDVAWTEPFDPNDP---ILK--  301 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~-ga~lDV~~~EPl~~~~p---L~~--  301 (346)
                      +|++++|... ...++.++....|++|+++++++  + +..  ..     +.+. +.++||+...|..+.+.   ++.  
T Consensus        75 vVilavp~~~-~~~v~~~~i~~~l~~~~ivi~~~--g-v~~--~~-----~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G  143 (338)
T 1np3_A           75 VVMILTPDEF-QGRLYKEEIEPNLKKGATLAFAH--G-FSI--HY-----NQVVPRADLDVIMIAPKAPGHTVRSEFVKG  143 (338)
T ss_dssp             EEEECSCHHH-HHHHHHHHTGGGCCTTCEEEESC--C-HHH--HT-----TSSCCCTTCEEEEEEESSCSHHHHHHHHTT
T ss_pred             EEEEeCCcHH-HHHHHHHHHHhhCCCCCEEEEcC--C-chh--HH-----HhhcCCCCcEEEeccCCCCchhHHHHHhcc
Confidence            9999999643 35555435556799999999873  3 221  11     1221 33456776667555442   222  


Q ss_pred             -CCceEEccCCC
Q 019081          302 -FKNVLITPHVG  312 (346)
Q Consensus       302 -~~nviiTPH~a  312 (346)
                       -.++++|||..
T Consensus       144 ~g~~~ii~~~~~  155 (338)
T 1np3_A          144 GGIPDLIAIYQD  155 (338)
T ss_dssp             CCCCEEEEEEEC
T ss_pred             CCCeEEEEecCC
Confidence             45688999854

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.05  E-value=1.1e-10  Score=108.68  Aligned_cols=143  Identities=22%  Similarity=0.276  Sum_probs=94.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccC--CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|||||+|.||+.+|+.+...  |++|+++|++.........        .+    ...  ....++++++++||+|++
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~--------~g----~~~--~~~~~~~~~~~~aDvVil   72 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE--------RG----IVD--EATADFKVFAALADVIIL   72 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH--------TT----SCS--EEESCTTTTGGGCSEEEE
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH--------cC----Ccc--cccCCHHHhhcCCCEEEE
Confidence            5899999999999999999865  7899999987543110000        00    000  012467778899999999


Q ss_pred             eecCCccccCCCCHHHHcc-CCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe---cCCC---CCCCCCCCCCCCCc
Q 019081          232 CLSLNKQTAGIVNKSFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID---VAWT---EPFDPNDPILKFKN  304 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD---V~~~---EPl~~~~pL~~~~n  304 (346)
                      ++|.. ..+.++. +.... ++++.++|+++.+.....+.+.+.+.+..+.  .++   ++..   .|......++.-.+
T Consensus        73 avp~~-~~~~v~~-~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~  148 (290)
T 3b1f_A           73 AVPIK-KTIDFIK-ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAY  148 (290)
T ss_dssp             CSCHH-HHHHHHH-HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSE
T ss_pred             cCCHH-HHHHHHH-HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCe
Confidence            99954 3344543 34556 8999999999887766667787877652222  233   2211   34334457787788


Q ss_pred             eEEccCCCCC
Q 019081          305 VLITPHVGGV  314 (346)
Q Consensus       305 viiTPH~a~~  314 (346)
                      ++++||.++.
T Consensus       149 ~~~~~~~~~~  158 (290)
T 3b1f_A          149 YIFSPSCLTK  158 (290)
T ss_dssp             EEEEECTTCC
T ss_pred             EEEecCCCCC
Confidence            9999997654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.04  E-value=2e-10  Score=106.60  Aligned_cols=176  Identities=16%  Similarity=0.127  Sum_probs=116.7

Q ss_pred             CCCCCcccccC-----cceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEecCCCCCCChhhHHH
Q 019081           44 VPISDVPDVIA-----NYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAE  118 (346)
Q Consensus        44 ~~~~~~~~~~~-----~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE  118 (346)
                      .+++++.+.++     +++++.+ +.++.++++..++.+.-.+....+++.++.    +.|-.    .|+   |....  
T Consensus        49 ~~~~~l~~~i~~l~~~~~~G~nv-tiP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~~----~g~---nTd~~--  114 (275)
T 2hk9_A           49 INPEELKKAFEGFKALKVKGINV-TVPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGKA----YGY---NTDWI--  114 (275)
T ss_dssp             CCGGGHHHHHHHHHHHTCCEEEE-CTTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTEE----EEE---CCHHH--
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEE-CccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCEE----Eee---cCCHH--
Confidence            44556555443     3556655 357788888888888888888888888864    34522    233   33322  


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccch
Q 019081          119 LTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSA  198 (346)
Q Consensus       119 ~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~  198 (346)
                         +++.++.+                 .+.++.|++++|||+|.+|+++++.|...|++|.++||+..+..        
T Consensus       115 ---G~~~~l~~-----------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~--------  166 (275)
T 2hk9_A          115 ---GFLKSLKS-----------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAI--------  166 (275)
T ss_dssp             ---HHHHHHHH-----------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHH--------
T ss_pred             ---HHHHHHHH-----------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHH--------
Confidence               33333322                 13467899999999999999999999999999999998754311        


Q ss_pred             hhhccccccccccccC--CcCCHHHHhhcCCEEEEeecCCcc--ccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHH
Q 019081          199 LAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQ--TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHY  274 (346)
Q Consensus       199 ~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~lPlt~~--T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~a  274 (346)
                               .+....+  ...++.++++++|+|++++|....  +...++   ++.+++|.++++++.   .. ..+++.
T Consensus       167 ---------~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~~-t~ll~~  230 (275)
T 2hk9_A          167 ---------KLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---KE-TKLLKK  230 (275)
T ss_dssp             ---------HHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---SC-CHHHHH
T ss_pred             ---------HHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---Ch-HHHHHH
Confidence                     1111111  123677888999999999997642  333454   456899999999988   33 345555


Q ss_pred             HHh
Q 019081          275 LEC  277 (346)
Q Consensus       275 L~~  277 (346)
                      .++
T Consensus       231 a~~  233 (275)
T 2hk9_A          231 AKE  233 (275)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.00  E-value=2.8e-10  Score=113.68  Aligned_cols=123  Identities=12%  Similarity=0.192  Sum_probs=93.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc-cC-CcCCHHHHhh---cCC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KG-CHEDIFEFAS---KAD  227 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~l~ell~---~aD  227 (346)
                      .++|||||+|.||..+|+.|...|++|++|||+........             ...... .. ...+++++++   .||
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-------------~~g~~g~~i~~~~s~~e~v~~l~~aD   70 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL-------------ANEAKGTKVVGAQSLKEMVSKLKKPR   70 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH-------------HTTTTTSSCEECSSHHHHHHTBCSSC
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-------------hcccCCCceeccCCHHHHHhhccCCC
Confidence            35899999999999999999999999999999765421100             000000 00 1367888887   499


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  289 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  289 (346)
                      +|++++|....++.++ .+....|++|.++||++++...+...+.+.|.+..+.....-|..
T Consensus        71 vVil~Vp~~~~v~~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           71 RIILLVKAGQAVDDFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             EEEECSCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             EEEEecCChHHHHHHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            9999999877777776 567778999999999999999999999999998877644444443

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=98.98  E-value=1.5e-10  Score=110.83  Aligned_cols=134  Identities=16%  Similarity=0.170  Sum_probs=86.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhc----CC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK----AD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~----aD  227 (346)
                      ++|||||+|.||.++|+.|+..|++|++||++......                  ....+  ...++++++++    ||
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~------------------a~~~G~~~~~~~~e~~~~a~~~aD   70 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKS------------------AVDEGFDVSADLEATLQRAAAEDA   70 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHH------------------HHHTTCCEESCHHHHHHHHHHTTC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHH------------------HHHcCCeeeCCHHHHHHhcccCCC
Confidence            58999999999999999999999999999987543110                  11111  13577777764    79


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe---cCCCC---CCCCCCCCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID---VAWTE---PFDPNDPILK  301 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD---V~~~E---Pl~~~~pL~~  301 (346)
                      +|++++|. ..+..++  +.+..+++|++++|++....-..+++.+.+.  ...  .++   ++-.|   |......|+.
T Consensus        71 lVilavP~-~~~~~vl--~~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~--~v~~HPmaG~e~sG~~aa~~~Lf~  143 (341)
T 3ktd_A           71 LIVLAVPM-TAIDSLL--DAVHTHAPNNGFTDVVSVKTAVYDAVKARNM--QHR--YVGSHPMAGTANSGWSASMDGLFK  143 (341)
T ss_dssp             EEEECSCH-HHHHHHH--HHHHHHCTTCCEEECCSCSHHHHHHHHHTTC--GGG--EECEEECCSCC-CCGGGCCSSTTT
T ss_pred             EEEEeCCH-HHHHHHH--HHHHccCCCCEEEEcCCCChHHHHHHHHhCC--CCc--EecCCccccccccchhhhhhHHhc
Confidence            99999995 4566665  2344469999999997654322223333221  111  122   22222   2223346777


Q ss_pred             CCceEEccCCC
Q 019081          302 FKNVLITPHVG  312 (346)
Q Consensus       302 ~~nviiTPH~a  312 (346)
                      -.++++||+-.
T Consensus       144 g~~~iltp~~~  154 (341)
T 3ktd_A          144 RAVWVVTFDQL  154 (341)
T ss_dssp             TCEEEECCGGG
T ss_pred             CCeEEEEeCCC
Confidence            77899999743

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.96  E-value=1.7e-10  Score=105.26  Aligned_cols=109  Identities=18%  Similarity=0.217  Sum_probs=65.6

Q ss_pred             CCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc--ccccccccchhhhccccccccccccC--CcCCHH
Q 019081          145 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIF  220 (346)
Q Consensus       145 ~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  220 (346)
                      .....++.+++|||||+|.||..+|+.|...|++|++|||+...  ....... .    .+.....+....+  ...++.
T Consensus        11 ~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~   85 (245)
T 3dtt_A           11 HHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDA-M----GAPPFSQWLPEHPHVHLAAFA   85 (245)
T ss_dssp             --------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC------------CCHHHHGGGSTTCEEEEHH
T ss_pred             cccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhh-h----cchhhhHHHhhcCceeccCHH
Confidence            34567899999999999999999999999999999999987543  0000000 0    0000001111111  235788


Q ss_pred             HHhhcCCEEEEeecCCccccCCCCHHH-HccCCCCcEEEEcC
Q 019081          221 EFASKADVVVCCLSLNKQTAGIVNKSF-LSSMKKGSLLVNIA  261 (346)
Q Consensus       221 ell~~aDiV~~~lPlt~~T~~li~~~~-l~~mk~gailIN~s  261 (346)
                      +++++||+|++++|...... .+. +. ...+ +|.++|+++
T Consensus        86 e~~~~aDvVilavp~~~~~~-~~~-~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           86 DVAAGAELVVNATEGASSIA-ALT-AAGAENL-AGKILVDIA  124 (245)
T ss_dssp             HHHHHCSEEEECSCGGGHHH-HHH-HHCHHHH-TTSEEEECC
T ss_pred             HHHhcCCEEEEccCcHHHHH-HHH-Hhhhhhc-CCCEEEECC
Confidence            99999999999999654332 221 11 1223 799999999

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.93  E-value=8.5e-10  Score=110.28  Aligned_cols=114  Identities=14%  Similarity=0.199  Sum_probs=88.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccccc---C--CcCCHHHHhh
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---G--CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~l~ell~  224 (346)
                      -.+.++|||||+|.||+.+|+.|...|++|.+|||+.....                 .+....   +  ...+++++++
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~-----------------~l~~~~~~~gi~~~~s~~e~v~   74 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTE-----------------EVIAENPGKKLVPYYTVKEFVE   74 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHH-----------------HHHHHSTTSCEEECSSHHHHHH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHH-----------------HHHhhCCCCCeEEeCCHHHHHh
Confidence            35667999999999999999999999999999999754321                 011110   1  2357889888


Q ss_pred             c---CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          225 K---ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       225 ~---aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      .   ||+|++++|....++.++ .+....+++|.++||++.|...+...+.+.|.+..+.
T Consensus        75 ~l~~aDvVil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           75 SLETPRRILLMVKAGAGTDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             TBCSSCEEEECSCSSSHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CCCCCCEEEEECCCHHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            7   999999999877788777 3566779999999999999888888898989875444

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.93  E-value=2.6e-09  Score=98.62  Aligned_cols=145  Identities=17%  Similarity=0.231  Sum_probs=91.7

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP  234 (346)
                      +|+|||+|.||+.+|+.+...|++|+++|++........        ..+    ....  ...+++++ ++||+|++++|
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~--------~~g----~~~~--~~~~~~~~-~~~D~vi~av~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV--------ERQ----LVDE--AGQDLSLL-QTAKIIFLCTP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH--------HTT----SCSE--EESCGGGG-TTCSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH--------hCC----CCcc--ccCCHHHh-CCCCEEEEECC
Confidence            799999999999999999999999999998754311000        000    0000  12467788 89999999999


Q ss_pred             CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCC---CCCCCCCCCCCCCceEEccCC
Q 019081          235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT---EPFDPNDPILKFKNVLITPHV  311 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~---EPl~~~~pL~~~~nviiTPH~  311 (346)
                      . ..+..++. +....++++.++|+++.......+.+.+.+.  ++.+. --++..   .|-...+.++.-..++++|+-
T Consensus        67 ~-~~~~~~~~-~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~  141 (279)
T 2f1k_A           67 I-QLILPTLE-KLIPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTE  141 (279)
T ss_dssp             H-HHHHHHHH-HHGGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECT
T ss_pred             H-HHHHHHHH-HHHhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCC
Confidence            4 34455542 4455689999999997765544555555433  33322 123311   233333456666788999975


Q ss_pred             CCCcHHHHH
Q 019081          312 GGVTEHSYR  320 (346)
Q Consensus       312 a~~t~~~~~  320 (346)
                      ++ +++..+
T Consensus       142 ~~-~~~~~~  149 (279)
T 2f1k_A          142 YT-DPEQLA  149 (279)
T ss_dssp             TC-CHHHHH
T ss_pred             CC-CHHHHH
Confidence            44 344433

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.92  E-value=8.6e-10  Score=106.38  Aligned_cols=108  Identities=24%  Similarity=0.311  Sum_probs=82.0

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhh-cCC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-KAD  227 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~aD  227 (346)
                      +|.||+|+|+|+|+||+.+|+.|..+|++|+++|++..+..                 ++.+..+ ...+.++++. +||
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~-----------------~~a~~~ga~~v~~~~ll~~~~D  232 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVS-----------------AAVAEEGADAVAPNAIYGVTCD  232 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHHHHCCEECCGGGTTTCCCS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHH-----------------HHHHHcCCEEEChHHHhccCCc
Confidence            79999999999999999999999999999999998643210                 1111111 2235566665 899


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +++.|.     +.++|+.+.++.|+ ..++++.+++++.+++ ..+.|+++.+.
T Consensus       233 Ivip~a-----~~~~I~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          233 IFAPCA-----LGAVLNDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             EEEECS-----CSCCBSTTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             Eeeccc-----hHHHhCHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            998763     67789988888885 5789999999988755 56777777663

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.91  E-value=5.1e-10  Score=104.01  Aligned_cols=107  Identities=14%  Similarity=0.161  Sum_probs=82.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+|.||+.+|+.|...|++|++|| +.....                 .+..... ...+++++++++|+|+++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~-----------------~~~~~g~~~~~~~~~~~~~~D~vi~~   65 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVAD-----------------ELLSLGAVNVETARQVTEFADIIFIM   65 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCH-----------------HHHTTTCBCCSSHHHHHHTCSEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHH-----------------HHHHcCCcccCCHHHHHhcCCEEEEE
Confidence            489999999999999999999999999998 654321                 0111111 246788999999999999


Q ss_pred             ecCCccccCCCCH--HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          233 LSLNKQTAGIVNK--SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       233 lPlt~~T~~li~~--~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +|....++.++..  +....+++|.++|+++.|...+.+.|.+.+.+.
T Consensus        66 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  113 (295)
T 1yb4_A           66 VPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM  113 (295)
T ss_dssp             CSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            9976555555532  344568999999999999877888899988873

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.43  E-value=1.4e-10  Score=102.96  Aligned_cols=94  Identities=20%  Similarity=0.243  Sum_probs=72.5

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      +.++++||||+|.||+.+|+.|...|++|+++||+....                  .+........++.+++++||+|+
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~------------------~~~~~g~~~~~~~~~~~~aDvVi   78 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVS------------------SLLPRGAEVLCYSEAASRSDVIV   78 (201)
Confidence            677899999999999999999999999999999865310                  01111112236778889999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL  266 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~v  266 (346)
                      +++|.. .++.++   .+..++++.++||+++|-..
T Consensus        79 lav~~~-~~~~v~---~l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           79 LAVHRE-HYDFLA---ELADSLKGRVLIDVSNNQKM  110 (201)
Confidence            999964 677776   25567889999999999854

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.90  E-value=6.6e-10  Score=103.58  Aligned_cols=110  Identities=17%  Similarity=0.301  Sum_probs=84.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      .+|+|||+|.||+.+|+.+...|++|.++|++.....                 ....... ...+++++++++|+|+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~-----------------~~~~~g~~~~~~~~~~~~~~D~vi~~   68 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIA-----------------DVIAAGAETASTAKAIAEQCDVIITM   68 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHHTTCEECSSHHHHHHHCSEEEEC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHH-----------------HHHHCCCeecCCHHHHHhCCCEEEEE
Confidence            4899999999999999999999999999998754311                 0101101 235788999999999999


Q ss_pred             ecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081          233 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  280 (346)
Q Consensus       233 lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  280 (346)
                      +|....++.++.  .+....+++|.++|+++.|...+.+.|.+.+.+..+
T Consensus        69 v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  118 (299)
T 1vpd_A           69 LPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGV  118 (299)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred             CCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            996666666652  244566899999999999987778889998887543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.90  E-value=4.9e-10  Score=104.56  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=83.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+|.||+.+|+.+...|++|.++|++.....                 ....... ...+++++++++|+|+++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~-----------------~~~~~g~~~~~~~~~~~~~~D~vi~~   67 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVA-----------------AVVAQGAQACENNQKVAAASDIIFTS   67 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHH-----------------HHHTTTCEECSSHHHHHHHCSEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHH-----------------HHHHCCCeecCCHHHHHhCCCEEEEE
Confidence            5899999999999999999989999999998654311                 0111101 235788999999999999


Q ss_pred             ecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          233 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       233 lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +|....++.++.  .+....+++|.++|+++.|...+.+.|.+.+.+.
T Consensus        68 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~  115 (301)
T 3cky_A           68 LPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK  115 (301)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            997666666664  2455678999999999998866778898888774

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.88  E-value=6.3e-10  Score=103.54  Aligned_cols=106  Identities=24%  Similarity=0.265  Sum_probs=79.8

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEee
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~l  233 (346)
                      +|||||+|.||+.+|+.+...|++|++|||+.....                 .+..... ...++++++++||+|++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~-----------------~~~~~g~~~~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACK-----------------EFQDAGEQVVSSPADVAEKADRIITML   64 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHH-----------------HHHTTTCEECSSHHHHHHHCSEEEECC
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHHcCCeecCCHHHHHhcCCEEEEeC
Confidence            799999999999999999999999999998754311                 0111111 2357889999999999999


Q ss_pred             cCCccccCCCCH--HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          234 SLNKQTAGIVNK--SFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       234 Plt~~T~~li~~--~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      |....++.++..  ..+..+++|.++|+++....-+.+.+.+.+.+
T Consensus        65 p~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~  110 (296)
T 2gf2_A           65 PTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEK  110 (296)
T ss_dssp             SSHHHHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            976666665543  24557899999999887777666777777765

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.86  E-value=1.6e-09  Score=101.99  Aligned_cols=110  Identities=18%  Similarity=0.253  Sum_probs=82.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+|.||+.+|+.|...|++|.++|++......                 +..... ...++++++++||+|+++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~~~DvVi~a   93 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDL-----------------FIQEGARLGRTPAEVVSTCDITFAC   93 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHH-----------------HHHTTCEECSCHHHHHHHCSEEEEC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHH-----------------HHHcCCEEcCCHHHHHhcCCEEEEe
Confidence            68999999999999999999999999999987543210                 100000 235788889999999999


Q ss_pred             ecCCccccCCCCH--HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081          233 LSLNKQTAGIVNK--SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  280 (346)
Q Consensus       233 lPlt~~T~~li~~--~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  280 (346)
                      +|....++.++..  ..+..+++|.++|+++.+.....+.+.+.+....+
T Consensus        94 v~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~  143 (316)
T 2uyy_A           94 VSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGG  143 (316)
T ss_dssp             CSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9965555555432  23466899999999999877677888888866444

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.86  E-value=2.3e-09  Score=106.81  Aligned_cols=150  Identities=13%  Similarity=0.193  Sum_probs=95.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccC--CCEEEEEcCCCccccccccccchhhhccccccccccc---cC--CcCCHHHHhhcC
Q 019081          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE---KG--CHEDIFEFASKA  226 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~l~ell~~a  226 (346)
                      ++|+|||+|.||..+|..|...  |++|+++|++..+...-..  ...+.....+.+....   ..  ...++.+.+++|
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~--g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~a   83 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNS--PTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEA   83 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTS--SSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhC--CCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcC
Confidence            4899999999999999999877  8999999987543111000  0000000000001100   01  235788889999


Q ss_pred             CEEEEeecCCccccCCC-------------CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe---cCCC
Q 019081          227 DVVVCCLSLNKQTAGIV-------------NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID---VAWT  290 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li-------------~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD---V~~~  290 (346)
                      |+|++++|......+.+             -+.....|++|+++|++|+..+-..+.+.+.|++....  .+|   ++.+
T Consensus        84 DvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~P  161 (467)
T 2q3e_A           84 DLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNP  161 (467)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECC
T ss_pred             CEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCH
Confidence            99999999544433322             12345578999999999999888888899999876422  234   3566


Q ss_pred             CCCCCCCC---CCCCCceEE
Q 019081          291 EPFDPNDP---ILKFKNVLI  307 (346)
Q Consensus       291 EPl~~~~p---L~~~~nvii  307 (346)
                      |++.+...   +...+++++
T Consensus       162 e~~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          162 EFLAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCCCTTSHHHHHHSCSCEEE
T ss_pred             HHhhcccchhhccCCCEEEE
Confidence            76655443   345566664

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.86  E-value=7e-10  Score=109.67  Aligned_cols=108  Identities=24%  Similarity=0.306  Sum_probs=74.8

Q ss_pred             cccCCCC-ccccCC-CeEEEEecCHHHHHHHHHHccC------CCEEEEEcCCCccccccccccchhhhccccccccccc
Q 019081          141 KKLGVPT-GETLLG-KTVFILGFGNIGVELAKRLRPF------GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE  212 (346)
Q Consensus       141 ~~~~~~~-~~~l~g-~tvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (346)
                      ++|..+. ...|.| ++|||||+|.||.++|+.|+..      |++|++.+++..+......            ...+..
T Consensus        40 ~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~------------e~G~~v  107 (525)
T 3fr7_A           40 GRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEAR------------AAGFTE  107 (525)
T ss_dssp             CGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH------------HTTCCT
T ss_pred             cccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHH------------HCCCEE
Confidence            3455333 467999 9999999999999999999987      9998866554322100000            000100


Q ss_pred             -cCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          213 -KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       213 -~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                       .....++.+++++||+|++++|..... .++. +.+..||+|++ |-.+.|
T Consensus       108 ~d~ta~s~aEAa~~ADVVILaVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaG  156 (525)
T 3fr7_A          108 ESGTLGDIWETVSGSDLVLLLISDAAQA-DNYE-KIFSHMKPNSI-LGLSHG  156 (525)
T ss_dssp             TTTCEEEHHHHHHHCSEEEECSCHHHHH-HHHH-HHHHHSCTTCE-EEESSS
T ss_pred             ecCCCCCHHHHHhcCCEEEECCChHHHH-HHHH-HHHHhcCCCCe-EEEeCC
Confidence             001257899999999999999976554 4665 68889999998 566667

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.85  E-value=8.4e-10  Score=102.16  Aligned_cols=106  Identities=18%  Similarity=0.318  Sum_probs=80.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      ++|||||+|.||+.+|+.+.. |++|.++|++......                 .........+++++++++|+|++++
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~~D~vi~~v   63 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALR-----------------HQEEFGSEAVPLERVAEARVIFTCL   63 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHH-----------------HHHHHCCEECCGGGGGGCSEEEECC
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHH-----------------HHHCCCcccCHHHHHhCCCEEEEeC
Confidence            479999999999999999999 9999999987543110                 0000011112667788999999999


Q ss_pred             cCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      |....++.++ ++....+++|.++|+++.+...+.+.|.+.+.+.
T Consensus        64 ~~~~~~~~v~-~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  107 (289)
T 2cvz_A           64 PTTREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREK  107 (289)
T ss_dssp             SSHHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            9655566555 4455678999999999998888888899988874

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.85  E-value=3.6e-09  Score=106.20  Aligned_cols=111  Identities=15%  Similarity=0.226  Sum_probs=87.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-c---cC--CcCCHHHHhhc-
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-E---KG--CHEDIFEFASK-  225 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~--~~~~l~ell~~-  225 (346)
                      ..+|||||+|.||..+|+.|...|++|.+|||+.....                 .+.. .   .+  ...+++++++. 
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~-----------------~l~~~~~~~~gi~~~~s~~e~v~~l   72 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVD-----------------HFLANEAKGKSIIGATSIEDFISKL   72 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHH-----------------HHHHTTTTTSSEECCSSHHHHHHTS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHcccccCCCeEEeCCHHHHHhcC
Confidence            35899999999999999999999999999999765421                 1111 0   11  34678898877 


Q ss_pred             --CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          226 --ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       226 --aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                        ||+|++++|....++.++ .+....+++|.++|+++.+...+...+.+.+.+..+.
T Consensus        73 ~~aDvVil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           73 KRPRKVMLLVKAGAPVDALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             CSSCEEEECCCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEEEcCChHHHHHHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence              999999999766777777 4566779999999999999888888899988875443

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.84  E-value=2.1e-08  Score=96.52  Aligned_cols=190  Identities=14%  Similarity=0.104  Sum_probs=116.0

Q ss_pred             cceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCcEEEec---CCCCCC--ChhhHHHHHH--HHHHHH
Q 019081           55 NYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARI---PGDVTG--NAASCAELTI--YLMLGL  127 (346)
Q Consensus        55 ~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~---p~~~~~--na~~vAE~~~--~~~l~~  127 (346)
                      ++|+++....+...+.....+++.++......++.-.++.+.+.|+...|.   |.-...  --.++++.+-  +.++..
T Consensus        66 ~ad~i~~vksP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA  145 (361)
T 1pjc_A           66 SREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGA  145 (361)
T ss_dssp             TSSEEECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHH
Confidence            688877554555444434456776766666666655567778888888754   432100  0133444333  333332


Q ss_pred             HHhHHHHHHHHHhcc-cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccc
Q 019081          128 LRKQNEMRMAIEQKK-LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII  206 (346)
Q Consensus       128 ~R~~~~~~~~~~~~~-~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~  206 (346)
                      . ++...    ..|+ +....-..+.+++|.|+|.|.+|+.+++.++.+|++|+++|++..+......            
T Consensus       146 ~-nt~~~----~~g~G~~l~~l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~------------  208 (361)
T 1pjc_A          146 R-FLERQ----QGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET------------  208 (361)
T ss_dssp             H-HTSGG----GTSCCCCTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH------------
T ss_pred             H-HHhhc----cCCCceeccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH------------
Confidence            2 11110    1111 1000012478899999999999999999999999999999997543211000            


Q ss_pred             ccccccc----CCcCCHHHHhhcCCEEEEeecCCc-cccCCCCHHHHccCCCCcEEEEcCC
Q 019081          207 DDLVDEK----GCHEDIFEFASKADVVVCCLSLNK-QTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       207 ~~~~~~~----~~~~~l~ell~~aDiV~~~lPlt~-~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                       ......    ....++.+.+..+|+|+.+++... .+..++.++.++.||+|++++|++-
T Consensus       209 -~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          209 -LFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             -HHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             -hhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence             000000    012356677889999999987533 3456778899999999999999973

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.82  E-value=5.7e-09  Score=86.98  Aligned_cols=93  Identities=19%  Similarity=0.260  Sum_probs=68.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      +++++|||+|.||+.+++.|+..|++|.++||+..+......             ..........+++++++++|+|+++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~-------------~~~~~~~~~~~~~~~~~~~Divi~a   87 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAE-------------KYEYEYVLINDIDSLIKNNDVIITA   87 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHH-------------HHTCEEEECSCHHHHHHTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH-------------HhCCceEeecCHHHHhcCCCEEEEe
Confidence            889999999999999999999999999999987543211000             0000001246788999999999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +|..   ..++..   +.+++|.++++++...
T Consensus        88 t~~~---~~~~~~---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           88 TSSK---TPIVEE---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             SCCS---SCSBCG---GGCCTTCEEEECCSSC
T ss_pred             CCCC---CcEeeH---HHcCCCCEEEEccCCc
Confidence            9865   345555   3478899999998654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.81  E-value=6.3e-09  Score=97.49  Aligned_cols=146  Identities=16%  Similarity=0.122  Sum_probs=90.4

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      -+.|+|||||+|.||..+|+.++ .|++|++||++..........     +    .+..........++++ +++||+|+
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~-----l----~~~~~~~i~~~~~~~~-~~~aDlVi   78 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ-----I----PEELLSKIEFTTTLEK-VKDCDIVM   78 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-----S----CGGGGGGEEEESSCTT-GGGCSEEE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH-----H----HHHHhCCeEEeCCHHH-HcCCCEEE
Confidence            46789999999999999999999 999999999976432111000     0    0000000001245666 88999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEcc
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITP  309 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTP  309 (346)
                      .++|...+.+..+-++ ++.+ +|++++ |+|.-++   ..+.++++ ......++-.|.  |.      ...+-+.++|
T Consensus        79 eavpe~~~vk~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~--Pv------~~~~lveiv~  144 (293)
T 1zej_A           79 EAVFEDLNTKVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN--PP------HVMPLVEIVI  144 (293)
T ss_dssp             ECCCSCHHHHHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS--ST------TTCCEEEEEE
T ss_pred             EcCcCCHHHHHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC--cc------ccCCEEEEEC
Confidence            9999887765555443 5667 999984 8877443   44544442 233345666665  32      3356777887


Q ss_pred             CCCCCcHHHHHHH
Q 019081          310 HVGGVTEHSYRSM  322 (346)
Q Consensus       310 H~a~~t~~~~~~~  322 (346)
                      +-.+ ++++.+++
T Consensus       145 g~~t-~~~~~~~~  156 (293)
T 1zej_A          145 SRFT-DSKTVAFV  156 (293)
T ss_dssp             CTTC-CHHHHHHH
T ss_pred             CCCC-CHHHHHHH
Confidence            6332 34444443

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.80  E-value=6.3e-09  Score=103.15  Aligned_cols=188  Identities=15%  Similarity=0.082  Sum_probs=109.8

Q ss_pred             ChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccc-------cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcC
Q 019081          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET-------LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (346)
Q Consensus       112 na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~-------l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~  184 (346)
                      |-..|.|.+.++++.         ..+..++|..|.+..       -.=++|||||+|.||..+|..+...|++|+++|+
T Consensus        15 ~~~~~~~~~~~~~~~---------a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~   85 (460)
T 3k6j_A           15 NLYFQGSEVRSYLME---------AHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVR   85 (460)
T ss_dssp             GGGGCBCHHHHHHHH---------TTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             chhhhhHHHHHHHHh---------HHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEC
Confidence            455667777777776         222345676553221       1226899999999999999999999999999999


Q ss_pred             CCccccccccccchhhhccccccc-----cccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEE-
Q 019081          185 SWASHSQVSCQSSALAVKNGIIDD-----LVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-  258 (346)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-  258 (346)
                      +..+............++.+.+..     .........+++ .+++||+|+.++|...+.+.-+-++..+.++++++|+ 
T Consensus        86 ~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlas  164 (460)
T 3k6j_A           86 NEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGT  164 (460)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEE
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence            765210000000000000010000     000001134664 6899999999999776655444456667799999996 


Q ss_pred             EcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcHHHHHHH
Q 019081          259 NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       259 N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~~~~~~~  322 (346)
                      |+|.   +.-..+.+++.. .-...++..|.  |.+      .++-|.+.|+-. .++++.+++
T Consensus       165 nTSs---l~i~~ia~~~~~-p~r~iG~Hffn--Pv~------~m~LvEIv~g~~-Ts~e~~~~~  215 (460)
T 3k6j_A          165 NTSS---LDLNEISSVLRD-PSNLVGIHFFN--PAN------VIRLVEIIYGSH-TSSQAIATA  215 (460)
T ss_dssp             CCSS---SCHHHHHTTSSS-GGGEEEEECCS--STT------TCCEEEEECCSS-CCHHHHHHH
T ss_pred             cCCC---hhHHHHHHhccC-CcceEEEEecc--hhh------hCCEEEEEeCCC-CCHHHHHHH
Confidence            5554   444566665543 23456777776  422      345567777632 244554444

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.79  E-value=4.1e-09  Score=105.19  Aligned_cols=114  Identities=16%  Similarity=0.200  Sum_probs=85.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhc---CCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK---ADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~---aDiV  229 (346)
                      ++|||||+|.||+.+|+.+...|++|.+|||+........             ..... ......+++++++.   +|+|
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~-------------~~~~~~gi~~~~s~~e~v~~l~~aDvV   72 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVF-------------KEHQDKNLVFTKTLEEFVGSLEKPRRI   72 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH-------------HHTTTSCEEECSSHHHHHHTBCSSCEE
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH-------------HhCcCCCeEEeCCHHHHHhhccCCCEE
Confidence            5899999999999999999999999999998754311000             00000 00123578888876   9999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ++++|....++.++ .+....+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        73 ilavp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~  123 (474)
T 2iz1_A           73 MLMVQAGAATDATI-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN  123 (474)
T ss_dssp             EECCCTTHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred             EEEccCchHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence            99999776777766 3455678999999999999877888888888765444

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.76  E-value=5.6e-09  Score=104.38  Aligned_cols=116  Identities=12%  Similarity=0.173  Sum_probs=85.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhh---cCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS---KADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~---~aDiV  229 (346)
                      ++|||||+|.||+.+|..|...|++|.+|||+.........        .    ....... ...+++++++   .+|+|
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~--------~----~~~g~gi~~~~~~~e~v~~l~~aDvV   70 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA--------N----EAKGTKVLGAHSLEEMVSKLKKPRRI   70 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHH--------T----TTTTSSCEECSSHHHHHHHBCSSCEE
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh--------c----cccCCCeEEeCCHHHHHhhccCCCEE
Confidence            47999999999999999999999999999987643210000        0    0000001 2357888874   89999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      ++++|....++.++. +....+++|.+||+++.|...+...+.+.+.+..+..
T Consensus        71 ilaVp~~~~v~~vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~  122 (482)
T 2pgd_A           71 ILLVKAGQAVDNFIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF  122 (482)
T ss_dssp             EECSCTTHHHHHHHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             EEeCCChHHHHHHHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeE
Confidence            999997667777763 4556789999999999998877888888888754443

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.73  E-value=5.6e-09  Score=104.33  Aligned_cols=126  Identities=21%  Similarity=0.307  Sum_probs=87.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc---CCEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~  230 (346)
                      .+|||||+|.||+.+|..+...|++|.+|||+.......... .+.. +      .........+++++++.   +|+|+
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~-~g~~-~------~~~~i~~~~~~~e~v~~l~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA-NASA-P------FAGNLKAFETMEAFAASLKKPRKAL   73 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH-TTTS-T------TGGGEEECSCHHHHHHHBCSSCEEE
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-cCCC-C------CCCCeEEECCHHHHHhcccCCCEEE
Confidence            379999999999999999999999999999875431110000 0000 0      00001123578888874   99999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA  288 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~  288 (346)
                      +++|....++.++ ++....+++|.++|+++.|...+.+.+.+.+.+..+.....-|.
T Consensus        74 laVp~~~~v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~  130 (478)
T 1pgj_A           74 ILVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGIS  130 (478)
T ss_dssp             ECCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             EecCChHHHHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeecc
Confidence            9999766677766 35556789999999999998778888999898755543333333

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.72  E-value=3.8e-09  Score=96.67  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=74.6

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP  234 (346)
                      +|||||+|.||..+|+.|...|++|+++|+.....  ...             .+...... .++++++++||+|++++|
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~--~~~-------------~~~~~g~~-~~~~~~~~~aDvvi~~v~   65 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPS--TIE-------------RARTVGVT-ETSEEDVYSCPVVISAVT   65 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHH--HHH-------------HHHHHTCE-ECCHHHHHTSSEEEECSC
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHH--HHH-------------HHHHCCCc-CCHHHHHhcCCEEEEECC
Confidence            79999999999999999998999999988731110  000             01000001 467788999999999999


Q ss_pred             CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      .....+.+  .+....+++  ++|+++.+...+.+.|.+.+.+
T Consensus        66 ~~~~~~~~--~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~  104 (264)
T 1i36_A           66 PGVALGAA--RRAGRHVRG--IYVDINNISPETVRMASSLIEK  104 (264)
T ss_dssp             GGGHHHHH--HHHHTTCCS--EEEECSCCCHHHHHHHHHHCSS
T ss_pred             CHHHHHHH--HHHHHhcCc--EEEEccCCCHHHHHHHHHHHhh
Confidence            76555544  455666776  9999998877677788888765

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.67  E-value=4.7e-09  Score=96.26  Aligned_cols=100  Identities=19%  Similarity=0.308  Sum_probs=72.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  225 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  225 (346)
                      +++.+.+|||||+|.||+.+|+.+...|++ |.++|++.....                 ......+  ...++++++++
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~   68 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESAR-----------------ELAQKVEAEYTTDLAEVNPY   68 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHH-----------------HHHHHTTCEEESCGGGSCSC
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHH-----------------HHHHHcCCceeCCHHHHhcC
Confidence            345667999999999999999999988998 899998654311                 0111111  23577888899


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD  267 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd  267 (346)
                      ||+|++++|.. ..+.++ ++....+++|+++|+++.|-..+
T Consensus        69 ~Dvvi~av~~~-~~~~v~-~~l~~~~~~~~ivv~~s~~~~~~  108 (266)
T 3d1l_A           69 AKLYIVSLKDS-AFAELL-QGIVEGKREEALMVHTAGSIPMN  108 (266)
T ss_dssp             CSEEEECCCHH-HHHHHH-HHHHTTCCTTCEEEECCTTSCGG
T ss_pred             CCEEEEecCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCchH
Confidence            99999999965 334444 34445688999999999987654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.64  E-value=1.1e-08  Score=91.26  Aligned_cols=94  Identities=22%  Similarity=0.233  Sum_probs=67.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ..++++|||+|.||+.+|+.+...|++|.++||+.....                 ..........+++++++++|+|++
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~-----------------~~~~~g~~~~~~~~~~~~~DvVi~   89 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTA-----------------RLFPSAAQVTFQEEAVSSPEVIFV   89 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHH-----------------HHSBTTSEEEEHHHHTTSCSEEEE
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHHcCCceecHHHHHhCCCEEEE
Confidence            457899999999999999999999999999998653310                 011110112367888999999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL  266 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~v  266 (346)
                      ++|. ...+.++.   ++.+.++.++|++++|-..
T Consensus        90 av~~-~~~~~v~~---l~~~~~~~~vv~~s~g~~~  120 (215)
T 2vns_A           90 AVFR-EHYSSLCS---LSDQLAGKILVDVSNPTEQ  120 (215)
T ss_dssp             CSCG-GGSGGGGG---GHHHHTTCEEEECCCCCHH
T ss_pred             CCCh-HHHHHHHH---HHHhcCCCEEEEeCCCccc
Confidence            9994 44555553   3333479999999998754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.59  E-value=1.6e-08  Score=93.82  Aligned_cols=92  Identities=21%  Similarity=0.277  Sum_probs=68.2

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+ |.||+.+|+.|...|++|++|||+.....                 ..........+..+++++||+|+++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~-----------------~~~~~g~~~~~~~~~~~~aDvVi~a   74 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRD-----------------RLQGMGIPLTDGDGWIDEADVVVLA   74 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHH-----------------HHHHTTCCCCCSSGGGGTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHH-----------------HHHhcCCCcCCHHHHhcCCCEEEEc
Confidence            58999999 99999999999999999999998653310                 0000001123566788999999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +|... ++.++ ++....++++.++|+++.|.
T Consensus        75 v~~~~-~~~v~-~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           75 LPDNI-IEKVA-EDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             SCHHH-HHHHH-HHHGGGSCTTCEEEESCSHH
T ss_pred             CCchH-HHHHH-HHHHHhCCCCCEEEECCCCc
Confidence            99543 55554 34445689999999998886

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.58  E-value=1.1e-07  Score=86.61  Aligned_cols=100  Identities=13%  Similarity=0.257  Sum_probs=72.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~  231 (346)
                      .+|||||+|.||+.+++.+...|.+|.++|++.....                 .+....+  ...+++++++++|+|++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~~D~Vi~   66 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSK-----------------EIAEQLALPYAMSHQDLIDQVDLVIL   66 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHH-----------------HHHHHHTCCBCSSHHHHHHTCSEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHH-----------------HHHHHcCCEeeCCHHHHHhcCCEEEE
Confidence            4899999999999999999999999999998754311                 1111111  23578899999999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      ++| ....     .+.+..+++|.++|+++.|-  ..+.+.+.+..+
T Consensus        67 ~v~-~~~~-----~~v~~~l~~~~~vv~~~~~~--~~~~l~~~~~~~  105 (259)
T 2ahr_A           67 GIK-PQLF-----ETVLKPLHFKQPIISMAAGI--SLQRLATFVGQD  105 (259)
T ss_dssp             CSC-GGGH-----HHHHTTSCCCSCEEECCTTC--CHHHHHHHHCTT
T ss_pred             EeC-cHhH-----HHHHHHhccCCEEEEeCCCC--CHHHHHHhcCCC
Confidence            999 3332     44555677899999997664  345666666654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.57  E-value=4.8e-08  Score=96.34  Aligned_cols=121  Identities=14%  Similarity=0.161  Sum_probs=77.6

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc----c--cCCcCCHHHHhhcCCE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD----E--KGCHEDIFEFASKADV  228 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~l~ell~~aDi  228 (346)
                      +|+|||+|.||..+|..+...|++|+++|++..+...-..  ...+.....+.+...    .  .....++++.+++||+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~--~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDv   79 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ--GKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDV   79 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT--TCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhC--CCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCE
Confidence            7999999999999999999999999999987543111000  000000000000000    0  0123578888999999


Q ss_pred             EEEeecCCccccCCCC--------HHHHccCCC---CcEEEEcCCCCCCC-HHHHHHHHHh
Q 019081          229 VVCCLSLNKQTAGIVN--------KSFLSSMKK---GSLLVNIARGGLLD-YEAIAHYLEC  277 (346)
Q Consensus       229 V~~~lPlt~~T~~li~--------~~~l~~mk~---gailIN~sRg~~vd-~~aL~~aL~~  277 (346)
                      |++++|......+..|        ++....|++   +.++|+.|...+-. .+.+.+.+++
T Consensus        80 viiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           80 SFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            9999996544333332        233345788   99999999777655 6667777776

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.57  E-value=3.9e-08  Score=87.39  Aligned_cols=80  Identities=16%  Similarity=0.286  Sum_probs=60.7

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      .++..++++|||+|.||..+|+.|...|++|+++||+..                                  .+++||+
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------------------------~~~~aD~   60 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------------------------ATTLGEI   60 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------------------------CSSCCSE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------------------------HhccCCE
Confidence            467889999999999999999999999999999987421                                  3467999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      |++++| ...++.++. +....++ ++++|++++|--
T Consensus        61 vi~av~-~~~~~~v~~-~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           61 VIMAVP-YPALAALAK-QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             EEECSC-HHHHHHHHH-HTHHHHT-TSEEEECCCCBC
T ss_pred             EEEcCC-cHHHHHHHH-HHHHhcC-CCEEEEECCCCC
Confidence            999999 566665553 2333467 999999999765

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.53  E-value=4.2e-08  Score=89.15  Aligned_cols=103  Identities=21%  Similarity=0.336  Sum_probs=72.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC----EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (346)
                      ++|||||+|.||+.+++.+...|+    +|.+|||+..+..                 .+....+  ...+..+++++||
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~-----------------~~~~~~g~~~~~~~~e~~~~aD   65 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLK-----------------NASEKYGLTTTTDNNEVAKNAD   65 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHH-----------------HHHHHHCCEECSCHHHHHHHCS
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHH-----------------HHHHHhCCEEeCChHHHHHhCC
Confidence            589999999999999999999998    9999999754311                 1111111  2358889999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      +|++++|. ...+.++ ++....++++.++|.+.-|  +..+.|.+.+..
T Consensus        66 vVilav~~-~~~~~v~-~~l~~~l~~~~~vvs~~~g--i~~~~l~~~~~~  111 (247)
T 3gt0_A           66 ILILSIKP-DLYASII-NEIKEIIKNDAIIVTIAAG--KSIESTENAFNK  111 (247)
T ss_dssp             EEEECSCT-TTHHHHC----CCSSCTTCEEEECSCC--SCHHHHHHHHCS
T ss_pred             EEEEEeCH-HHHHHHH-HHHHhhcCCCCEEEEecCC--CCHHHHHHHhCC
Confidence            99999974 3444444 3344557889999977554  345666666644

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.53  E-value=6.4e-08  Score=95.21  Aligned_cols=130  Identities=12%  Similarity=0.099  Sum_probs=82.5

Q ss_pred             CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc----cCCcCCHHHH
Q 019081          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE----KGCHEDIFEF  222 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~el  222 (346)
                      .+++..-.+|+|||+|.+|..+|..++. |++|++||++..+...-...  ..+.....+.++...    .....++.+.
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g--~~~i~e~~l~~ll~~~~~~l~~ttd~~ea  106 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQK--ISPIVDKEIQEYLAEKPLNFRATTDKHDA  106 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTT--CCSSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhcc--CCccccccHHHHHhhccCCeEEEcCHHHH
Confidence            3566667799999999999999999988 99999999876432110000  000000000001100    0123678899


Q ss_pred             hhcCCEEEEeecCCccc-------cCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081          223 ASKADVVVCCLSLNKQT-------AGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  280 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T-------~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  280 (346)
                      +++||+|++++|...+.       ..+..  +.... +++|+++|+.|.-++-..+.+.+.+.+..+
T Consensus       107 ~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          107 YRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             HTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             HhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            99999999999954221       11211  33455 899999999999998889999998876533

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.52  E-value=1.1e-07  Score=89.81  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=75.7

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccc----cCCcCCHHHHhh
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE----KGCHEDIFEFAS  224 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~ell~  224 (346)
                      ...+++||||+|.+|+.+++.+.. +|+ +|.+|||+..+..                 .+...    .....+++++++
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~-----------------~l~~~~~~~~~~~~~~~e~v~  195 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAE-----------------KFADTVQGEVRVCSSVQEAVA  195 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHH-----------------HHHHHSSSCCEECSSHHHHHT
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHH-----------------HHHHHhhCCeEEeCCHHHHHh
Confidence            356799999999999999998865 487 8999998754321                 11111    012368999999


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHH-HhCCCeEEEEe
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYL-ECGHLGGLGID  286 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL-~~g~i~ga~lD  286 (346)
                      +||+|++++|.   ++.++..   ..+++|.++++++....- ...|.+.+ +.|.   ..+|
T Consensus       196 ~aDiVi~atp~---~~~v~~~---~~l~~g~~vi~~g~~~p~-~~el~~~~~~~g~---~~vD  248 (312)
T 2i99_A          196 GADVIITVTLA---TEPILFG---EWVKPGAHINAVGASRPD-WRELDDELMKEAV---LYVD  248 (312)
T ss_dssp             TCSEEEECCCC---SSCCBCG---GGSCTTCEEEECCCCSTT-CCSBCHHHHHHSE---EEES
T ss_pred             cCCEEEEEeCC---CCcccCH---HHcCCCcEEEeCCCCCCC-ceeccHHHHhcCE---EEEC
Confidence            99999999984   3556665   468999999999766552 24444333 3342   3567

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.51  E-value=2e-07  Score=92.16  Aligned_cols=123  Identities=15%  Similarity=0.240  Sum_probs=79.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc----cc--CCcCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD----EK--GCHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~l~ell~~aD  227 (346)
                      -+++|||+|.+|..+|..|...|++|++||++..+...-......+ +..+ +.++..    ..  ....++.+.+++||
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~-~epg-l~~~~~~~~~~g~l~~ttd~~ea~~~aD   86 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPI-YEPG-LDALVASNVKAGRLSFTTDLAEGVKDAD   86 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSS-CCTT-HHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCc-cCCC-HHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence            4799999999999999999999999999999875421100000000 0000 000000    00  12368889999999


Q ss_pred             EEEEeecCCccc-cC------CC--CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          228 VVVCCLSLNKQT-AG------IV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       228 iV~~~lPlt~~T-~~------li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +|++++|..... .+      +.  -+.....|++|.++|+.|.-++-..+.+.+.+.+.
T Consensus        87 vvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           87 AVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            999999843211 11      11  13456689999999999976666677887777653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.50  E-value=2.9e-07  Score=86.05  Aligned_cols=156  Identities=15%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccc---ccchhhhccccccc----------cccccCCcCCHH
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD----------LVDEKGCHEDIF  220 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~~~~~l~  220 (346)
                      ++|+|||+|.||..+|..+...|++|+++|++.........   ......+..+.+..          .........+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            68999999999999999999889999999987543211000   00000000000000          000000135788


Q ss_pred             HHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh-CCCeEEEEecCCCCCCCCCCCC
Q 019081          221 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC-GHLGGLGIDVAWTEPFDPNDPI  299 (346)
Q Consensus       221 ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~-g~i~ga~lDV~~~EPl~~~~pL  299 (346)
                      +.+++||+|++++|...+...-+-++....++++++|+..+.|  +....+.+.+.. .++  +++..|.  |.      
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~~~~~~--~g~h~~~--P~------  163 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTRQDRF--AGLHFFN--PV------  163 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSCGGGE--EEEEECS--ST------
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcCCcccE--EEEecCC--Cc------
Confidence            8899999999999965443322233444567889998854433  344556555532 123  4555554  32      


Q ss_pred             CCCCceEEccCCCCCcHHHHHHH
Q 019081          300 LKFKNVLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       300 ~~~~nviiTPH~a~~t~~~~~~~  322 (346)
                      ...+.+.+.++-. .+++..+.+
T Consensus       164 ~~~~~~~i~~g~~-~~~e~~~~~  185 (302)
T 1f0y_A          164 PVMKLVEVIKTPM-TSQKTFESL  185 (302)
T ss_dssp             TTCCEEEEECCTT-CCHHHHHHH
T ss_pred             ccCceEEEeCCCC-CCHHHHHHH
Confidence            2245566666532 244444443

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.47  E-value=4.9e-07  Score=83.77  Aligned_cols=81  Identities=26%  Similarity=0.461  Sum_probs=68.5

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||.|. +|+.+|..|...|+.|++..++.                              .++++.+++|
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------------------------------~~L~~~~~~A  205 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------------------------------RDLADHVSRA  205 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHHTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------------------------------cCHHHHhccC
Confidence            4689999999999987 79999999999999999886421                              3688899999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      |+|+..+|.    .++|.++.   +|+|+++||++.-.+
T Consensus       206 DIVI~Avg~----p~~I~~~~---vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          206 DLVVVAAGK----PGLVKGEW---IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             SEEEECCCC----TTCBCGGG---SCTTCEEEECCSCSS
T ss_pred             CEEEECCCC----CCCCCHHH---cCCCeEEEEeccccc
Confidence            999999973    45788776   499999999987664

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.47  E-value=1.7e-07  Score=92.84  Aligned_cols=121  Identities=12%  Similarity=0.204  Sum_probs=77.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc----cc--CCcCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD----EK--GCHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~l~ell~~aD  227 (346)
                      .+|+|||+|.+|..+|..+...|++|+++|++..+...-...  ..+.....+.+...    ..  ....++++++++||
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g--~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aD   80 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSG--TIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEAD   80 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--CSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcC--CCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCC
Confidence            589999999999999999999999999999975431100000  00000000000000    00  12368889999999


Q ss_pred             EEEEeecCCcc---------ccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          228 VVVCCLSLNKQ---------TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       228 iV~~~lPlt~~---------T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      +|++++|....         .+..+ +.....+++|.++|+.|.-.+-..+.+.+.+++
T Consensus        81 vViiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           81 IIFIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99999995432         22221 344566899999999997666566777777665

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.44  E-value=4.1e-07  Score=84.39  Aligned_cols=128  Identities=20%  Similarity=0.392  Sum_probs=90.5

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|+..+++.                              .++.+.+++|
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------------------------~~L~~~~~~A  203 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------------------------KNLRHHVENA  203 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------------------------SCHHHHHHHC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHhccC
Confidence            4689999999999997 59999999999999999986431                              3688999999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+.+++.    .++|.++.   +|+|+++||+|.-.+-|          |++.|   ||-..+=       .. ---.
T Consensus       204 DIVI~Avg~----p~lI~~~~---vk~GavVIDVgi~r~~~----------g~l~G---DVdf~~v-------~~-~a~~  255 (288)
T 1b0a_A          204 DLLIVAVGK----PGFIPGDW---IKEGAIVIDVGINRLEN----------GKVVG---DVVFEDA-------AK-RASY  255 (288)
T ss_dssp             SEEEECSCC----TTCBCTTT---SCTTCEEEECCCEECTT----------SCEEC---SBCHHHH-------HH-HCSE
T ss_pred             CEEEECCCC----cCcCCHHH---cCCCcEEEEccCCccCC----------CCccC---CcCHHHH-------hh-hccE
Confidence            999999983    23687777   49999999999766432          55533   5531110       00 0235


Q ss_pred             EccCCCCCcHHHHHHHHHHHHHHHHHH
Q 019081          307 ITPHVGGVTEHSYRSMAKVVGDVALQL  333 (346)
Q Consensus       307 iTPH~a~~t~~~~~~~~~~~~~ni~~~  333 (346)
                      +||-=||.-+-+..-+.+..++..+++
T Consensus       256 iTPVPGGVGpmT~a~Ll~Ntv~aa~~~  282 (288)
T 1b0a_A          256 ITPVPGGVGPMTVATLIENTLQACVEY  282 (288)
T ss_dssp             ECCSSSSSHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCCCccHHHHHHHHHHHHHHHHHh
Confidence            899778876655544444444444433

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.44  E-value=4.2e-07  Score=84.43  Aligned_cols=108  Identities=14%  Similarity=0.157  Sum_probs=74.5

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  225 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  225 (346)
                      .++.|+++.|+|.|.+|++++..|...|+ +|++++|+..+..                 .+.....  ...++.+++++
T Consensus       113 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~-----------------~la~~~~~~~~~~~~~~~~~  175 (277)
T 3don_A          113 EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFN-----------------NWSLNINKINLSHAESHLDE  175 (277)
T ss_dssp             TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGT-----------------TCCSCCEEECHHHHHHTGGG
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-----------------HHHHhcccccHhhHHHHhcC
Confidence            46889999999999999999999999999 8999999865421                 1111111  23456677889


Q ss_pred             CCEEEEeecCC--ccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          226 ADVVVCCLSLN--KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       226 aDiV~~~lPlt--~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +|+|+.++|..  +.....++   .+.++++.+++++.-.+.. + .|+++.++.
T Consensus       176 aDiVInaTp~Gm~~~~~~~l~---~~~l~~~~~V~D~vY~P~~-T-~ll~~A~~~  225 (277)
T 3don_A          176 FDIIINTTPAGMNGNTDSVIS---LNRLASHTLVSDIVYNPYK-T-PILIEAEQR  225 (277)
T ss_dssp             CSEEEECCC-------CCSSC---CTTCCSSCEEEESCCSSSS-C-HHHHHHHHT
T ss_pred             CCEEEECccCCCCCCCcCCCC---HHHcCCCCEEEEecCCCCC-C-HHHHHHHHC
Confidence            99999999964  23222233   3557899999999877543 3 465554443

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.44  E-value=4.8e-07  Score=83.86  Aligned_cols=114  Identities=25%  Similarity=0.414  Sum_probs=85.2

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||.|. +|+.+|..|...|+.|++.+++.                              .++++.+++|
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------------------------~~L~~~~~~A  204 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA  204 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHTTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHhhcC
Confidence            4689999999999998 69999999999999999987531                              3688999999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+.++|.    .++|.++.   +|+|+++||++.-.+-|          |++.|   ||-..+=        .-.--.
T Consensus       205 DIVI~Avg~----p~~I~~~~---vk~GavVIDVgi~~~~~----------gkl~G---DVdf~~v--------~~~a~~  256 (285)
T 3p2o_A          205 DLIIVAAGC----VNLLRSDM---VKEGVIVVDVGINRLES----------GKIVG---DVDFEEV--------SKKSSY  256 (285)
T ss_dssp             SEEEECSSC----TTCBCGGG---SCTTEEEEECCCEECTT----------SCEEC---SBCHHHH--------TTTEEE
T ss_pred             CEEEECCCC----CCcCCHHH---cCCCeEEEEeccCcccC----------CCEec---cccHHHH--------HhhheE
Confidence            999999983    45688766   59999999998665422          66544   6632210        001246


Q ss_pred             EccCCCCCcHHHH
Q 019081          307 ITPHVGGVTEHSY  319 (346)
Q Consensus       307 iTPH~a~~t~~~~  319 (346)
                      +||-=||.-+-+.
T Consensus       257 iTPVPGGVGpmT~  269 (285)
T 3p2o_A          257 ITPVPGGVGPMTI  269 (285)
T ss_dssp             ECCSSSSHHHHHH
T ss_pred             eCCCCCcCcHHHH
Confidence            8997777655443

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.43  E-value=2.3e-07  Score=87.59  Aligned_cols=99  Identities=19%  Similarity=0.238  Sum_probs=71.4

Q ss_pred             CccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC------c--C
Q 019081          147 TGETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC------H--E  217 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~  217 (346)
                      .+.++.|+++.|||.|.| |+.+|+.|...|++|+++||+..+.....             ..+......      .  .
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra-------------~~la~~~~~~t~~~~t~~~  237 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRG-------------ESLKLNKHHVEDLGEYSED  237 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESC-------------CCSSCCCCEEEEEEECCHH
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHH-------------HHHhhhcccccccccccHh
Confidence            356899999999999975 99999999999999999998732210000             011111111      1  4


Q ss_pred             CHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          218 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       218 ~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      ++.+.+++||+|+.+++..   .-+|.++.   +|+|+++||+|...
T Consensus       238 ~L~e~l~~ADIVIsAtg~p---~~vI~~e~---vk~GavVIDVgi~r  278 (320)
T 1edz_A          238 LLKKCSLDSDVVITGVPSE---NYKFPTEY---IKEGAVCINFACTK  278 (320)
T ss_dssp             HHHHHHHHCSEEEECCCCT---TCCBCTTT---SCTTEEEEECSSSC
T ss_pred             HHHHHhccCCEEEECCCCC---cceeCHHH---cCCCeEEEEcCCCc
Confidence            6889999999999998742   22377776   48999999998653

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.43  E-value=5.6e-07  Score=83.44  Aligned_cols=114  Identities=22%  Similarity=0.399  Sum_probs=83.9

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||.|. +|+.+|..|...|+.|++.+++.                              .++++.+++|
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------------------------~~L~~~~~~A  205 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------------------------TDLKSHTTKA  205 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SSHHHHHTTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHhcccC
Confidence            4689999999999998 69999999999999999886531                              3688899999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+.++|.    .++|.++.   +|+|+++||++.-.+ +          |++.|   ||-..+=    .+    ---.
T Consensus       206 DIVI~Avg~----p~~I~~~~---vk~GavVIDvgi~~~-~----------g~l~G---DVdf~~v----~~----~a~~  256 (285)
T 3l07_A          206 DILIVAVGK----PNFITADM---VKEGAVVIDVGINHV-D----------GKIVG---DVDFAAV----KD----KVAA  256 (285)
T ss_dssp             SEEEECCCC----TTCBCGGG---SCTTCEEEECCCEEE-T----------TEEEC---SBCHHHH----TT----TCSE
T ss_pred             CEEEECCCC----CCCCCHHH---cCCCcEEEEecccCc-C----------Cceec---CccHHHH----Hh----hheE
Confidence            999999973    45687766   499999999986553 1          55433   6632210    00    1136


Q ss_pred             EccCCCCCcHHHHH
Q 019081          307 ITPHVGGVTEHSYR  320 (346)
Q Consensus       307 iTPH~a~~t~~~~~  320 (346)
                      +||-=||.-+-+..
T Consensus       257 iTPVPGGVGpmT~a  270 (285)
T 3l07_A          257 ITPVPGGVGPMTIT  270 (285)
T ss_dssp             ECCSSSSSHHHHHH
T ss_pred             eCCCCCcChHHHHH
Confidence            89977777655543

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.42  E-value=5.1e-07  Score=83.29  Aligned_cols=118  Identities=19%  Similarity=0.262  Sum_probs=84.7

Q ss_pred             cCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          151 LLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       151 l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      +.||++.|||.|. +|+.+|+.|...|++|++++++.                              .++++.+++||+|
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t------------------------------~~L~~~~~~ADIV  197 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT------------------------------KDIGSMTRSSKIV  197 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHHHSSEE
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc------------------------------ccHHHhhccCCEE
Confidence            8999999999996 79999999999999999987531                              3688999999999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEcc
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITP  309 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTP  309 (346)
                      +.++|.    .++|.++.   +|+|+++||++.-. .          +|++.|   ||-..+=    .+    ---.+||
T Consensus       198 I~Avg~----p~~I~~~~---vk~GavVIDvgi~~-~----------~gkl~G---DVdf~~v----~~----~a~~iTP  248 (276)
T 3ngx_A          198 VVAVGR----PGFLNREM---VTPGSVVIDVGINY-V----------NDKVVG---DANFEDL----SE----YVEAITP  248 (276)
T ss_dssp             EECSSC----TTCBCGGG---CCTTCEEEECCCEE-E----------TTEEEC---SBCHHHH----HT----TSSEECC
T ss_pred             EECCCC----CccccHhh---ccCCcEEEEeccCc-c----------CCceec---cccHHHH----hh----hceEeCC
Confidence            999984    34788776   59999999998654 2          245433   6632210    00    1246899


Q ss_pred             CCCCCcHHHHHHHHHHHH
Q 019081          310 HVGGVTEHSYRSMAKVVG  327 (346)
Q Consensus       310 H~a~~t~~~~~~~~~~~~  327 (346)
                      -=||.-+-+..-+.+..+
T Consensus       249 VPGGVGpmT~a~Ll~n~v  266 (276)
T 3ngx_A          249 VPGGVGPITATNILENVV  266 (276)
T ss_dssp             TTTSSHHHHHHHHHHHHH
T ss_pred             CCCcChHHHHHHHHHHHH
Confidence            777775555433333333

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.41  E-value=7.7e-07  Score=82.26  Aligned_cols=112  Identities=21%  Similarity=0.333  Sum_probs=83.9

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHccC--CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (346)
                      +.++.||++.|||.|.| |+.+|+.|...  |++|+..+++.                              .++.+.++
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t------------------------------~~L~~~~~  202 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT------------------------------RDLPALTR  202 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC------------------------------SCHHHHHT
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch------------------------------hHHHHHHh
Confidence            46799999999999985 99999999999  89999986532                              36889999


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCc
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  304 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  304 (346)
                      +||+|+.+++.    .++|.++.   +|+|+++||+|.-.+-|          |    ..=||- .+ .      .. .-
T Consensus       203 ~ADIVI~Avg~----p~~I~~~~---vk~GavVIDVgi~r~~~----------g----lvGDVd-~~-v------~~-~a  252 (281)
T 2c2x_A          203 QADIVVAAVGV----AHLLTADM---VRPGAAVIDVGVSRTDD----------G----LVGDVH-PD-V------WE-LA  252 (281)
T ss_dssp             TCSEEEECSCC----TTCBCGGG---SCTTCEEEECCEEEETT----------E----EEESBC-GG-G------GG-TC
T ss_pred             hCCEEEECCCC----CcccCHHH---cCCCcEEEEccCCCCCC----------C----ccCccc-cc-h------hh-he
Confidence            99999999983    23688877   48999999999766432          3    334774 22 1      11 22


Q ss_pred             eEEccCCCCCcHHHH
Q 019081          305 VLITPHVGGVTEHSY  319 (346)
Q Consensus       305 viiTPH~a~~t~~~~  319 (346)
                      -.+||-=||.-+-+.
T Consensus       253 ~~iTPVPGGVGpmT~  267 (281)
T 2c2x_A          253 GHVSPNPGGVGPLTR  267 (281)
T ss_dssp             SEEECSSSSSHHHHH
T ss_pred             eeecCCCCCccHHHH
Confidence            357997778765554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.40  E-value=6.8e-07  Score=81.90  Aligned_cols=105  Identities=18%  Similarity=0.154  Sum_probs=76.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKA  226 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~a  226 (346)
                      .+.| +++|+|.|.+|++++..|...|+ +|++++|+..+..                 .+....+  ...++.+.++++
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~-----------------~la~~~~~~~~~~~~~~~~~a  167 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAK-----------------ALDFPVKIFSLDQLDEVVKKA  167 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHH-----------------TCCSSCEEEEGGGHHHHHHTC
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-----------------HHHHHcccCCHHHHHhhhcCC
Confidence            3578 99999999999999999999999 8999999764321                 1111111  235678889999


Q ss_pred             CEEEEeecCCccc-cCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          227 DVVVCCLSLNKQT-AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       227 DiV~~~lPlt~~T-~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      |+|++++|..-.. ...++.+.   ++++.+++++.-+   .+.-|.+|.+.|
T Consensus       168 DiVInatp~gm~p~~~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          168 KSLFNTTSVGMKGEELPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             SEEEECSSTTTTSCCCSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CEEEECCCCCCCCCCCCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            9999999964211 23455444   5789999999988   555566666666

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.40  E-value=3.3e-07  Score=86.68  Aligned_cols=106  Identities=20%  Similarity=0.239  Sum_probs=73.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  225 (346)
                      ...+|||||+|.||..+|..|...|    .+|+++||+.......               .+ .+.+  ...+..+++++
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~---------------~l-~~~G~~~~~~~~e~~~~   84 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVS---------------AL-RKMGVKLTPHNKETVQH   84 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHH---------------HH-HHHTCEEESCHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHH---------------HH-HHcCCEEeCChHHHhcc
Confidence            3458999999999999999998888    7899999875410000               01 0111  12467888999


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      ||+|++++| ....+.++. +....++++.++|+++-|-  ..+.|.+.+.+
T Consensus        85 aDvVilav~-~~~~~~vl~-~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~  132 (322)
T 2izz_A           85 SDVLFLAVK-PHIIPFILD-EIGADIEDRHIVVSCAAGV--TISSIEKKLSA  132 (322)
T ss_dssp             CSEEEECSC-GGGHHHHHH-HHGGGCCTTCEEEECCTTC--CHHHHHHHHHT
T ss_pred             CCEEEEEeC-HHHHHHHHH-HHHhhcCCCCEEEEeCCCC--CHHHHHHHHhh
Confidence            999999999 445555442 3445688999999997663  34566666664

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.40  E-value=7.3e-07  Score=83.20  Aligned_cols=135  Identities=19%  Similarity=0.290  Sum_probs=92.6

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.|+++.|||.|+ +|+.+|+.|...|++|++.+++.                              .++.+.+++|
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------------------------~~L~~~~~~A  209 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------------------------AHLDEEVNKG  209 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SSHHHHHTTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc------------------------------ccHHHHhccC
Confidence            4689999999999996 69999999999999999986431                              3688999999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCCce
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNV  305 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nv  305 (346)
                      |+|+.+++.    .++|.++.   +|+|+++||+|.-.+-|..     -++| ++.|   ||-..+ .      . ----
T Consensus       210 DIVI~Avg~----p~~I~~~~---vk~GavVIDVgi~~~~d~~-----~~~g~klvG---DVdf~~-v------~-~~a~  266 (301)
T 1a4i_A          210 DILVVATGQ----PEMVKGEW---IKPGAIVIDCGINYVPDDK-----KPNGRKVVG---DVAYDE-A------K-ERAS  266 (301)
T ss_dssp             SEEEECCCC----TTCBCGGG---SCTTCEEEECCCBC---------------CCBC---SBCHHH-H------T-TTCS
T ss_pred             CEEEECCCC----cccCCHHH---cCCCcEEEEccCCCccccc-----ccCCCeeec---cccHHH-h------h-hhce
Confidence            999999985    34788877   4899999999986643321     1234 5544   663222 0      0 0124


Q ss_pred             EEccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 019081          306 LITPHVGGVTEHSYRSMAKVVGDVALQLHA  335 (346)
Q Consensus       306 iiTPH~a~~t~~~~~~~~~~~~~ni~~~~~  335 (346)
                      .+||-=||.-+-+..-+.+..++..++.+.
T Consensus       267 ~iTPVPGGVGpmTiamLl~Ntv~aa~~~~~  296 (301)
T 1a4i_A          267 FITPVPGGVGPMTVAMLMQSTVESAKRFLE  296 (301)
T ss_dssp             EECCSSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EeCCCCCCccHHHHHHHHHHHHHHHHHHhh
Confidence            689988887666655555555555545443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.39  E-value=4.1e-07  Score=89.52  Aligned_cols=112  Identities=15%  Similarity=0.217  Sum_probs=74.3

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH--------
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF--------  222 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el--------  222 (346)
                      -+|.++.|||+|.+|..+|..|...|++|++||++..+...-.         .+.     . ......++++        
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~---------~g~-----~-pi~epgl~~ll~~~~~~g   73 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQ---------NGQ-----I-SIEEPGLQEVYEEVLSSG   73 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH---------TTC-----C-SSCCTTHHHHHHHHHHTT
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH---------CCC-----C-CcCCCCHHHHHHhhcccC
Confidence            4688999999999999999999999999999999765321100         000     0 0000122222        


Q ss_pred             -------hhcCCEEEEeecCCcccc--------CCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          223 -------ASKADVVVCCLSLNKQTA--------GIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       223 -------l~~aDiV~~~lPlt~~T~--------~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                             +++||+|++|+|......        .+..  +...+.|++|+++|+.|.-++-..+.+.+.+.+
T Consensus        74 ~l~~ttd~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e  145 (431)
T 3ojo_A           74 KLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIE  145 (431)
T ss_dssp             CEEEESSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHH
T ss_pred             ceEEeCchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHH
Confidence                   357999999999433221        1222  345667999999999998888778888776543

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.39  E-value=6.2e-07  Score=83.72  Aligned_cols=132  Identities=22%  Similarity=0.343  Sum_probs=89.5

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHH--HHhh
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF--EFAS  224 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ell~  224 (346)
                      +.++.||++.|||.|. +|+.+|..|...|+.|++++++.                              .+++  +.++
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T------------------------------~~l~l~~~~~  209 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGT------------------------------STEDMIDYLR  209 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTS------------------------------CHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCC------------------------------CCchhhhhhc
Confidence            4689999999999998 69999999999999999987632                              1455  8899


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCCCCCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFK  303 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~  303 (346)
                      +||+|+.++|.    .++|.++.   +|+|+++||++.-.+-|...     ++| ++.|   ||-..+=       . --
T Consensus       210 ~ADIVI~Avg~----p~~I~~~~---vk~GavVIDvgi~~~~~~~~-----~~g~kl~G---DVdf~~v-------~-~~  266 (300)
T 4a26_A          210 TADIVIAAMGQ----PGYVKGEW---IKEGAAVVDVGTTPVPDPSR-----KDGYRLVG---DVCFEEA-------A-AR  266 (300)
T ss_dssp             TCSEEEECSCC----TTCBCGGG---SCTTCEEEECCCEEESCSCS-----TTSCEEEC---SBCHHHH-------T-TT
T ss_pred             cCCEEEECCCC----CCCCcHHh---cCCCcEEEEEeccCCcCCcc-----cCCceeec---CccHHHH-------H-hh
Confidence            99999999984    34787766   59999999998654322100     011 3332   5532220       0 01


Q ss_pred             ceEEccCCCCCcHHHHHHHHHHHHHHHHH
Q 019081          304 NVLITPHVGGVTEHSYRSMAKVVGDVALQ  332 (346)
Q Consensus       304 nviiTPH~a~~t~~~~~~~~~~~~~ni~~  332 (346)
                      --.+||-=||.-+-+..-+.+..++..++
T Consensus       267 a~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~  295 (300)
T 4a26_A          267 AAWISPVPGGVGPMTIAMLLENTLEAFKA  295 (300)
T ss_dssp             CSEEECTTTSSSHHHHHHHHHHHHHHHHH
T ss_pred             ceEeCCCCCcChHHHHHHHHHHHHHHHHH
Confidence            24689977777666554444444444333

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.37  E-value=8.2e-08  Score=84.74  Aligned_cols=123  Identities=19%  Similarity=0.185  Sum_probs=78.9

Q ss_pred             eEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       155 tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      +++|+| .|.||+.+++.|...|++|.++||+.......... .+..+..      .+  ....+++++++++|+|++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~------~~--~~~~~~~~~~~~~D~Vi~~~   72 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE-YRRIAGD------AS--ITGMKNEDAAEACDIAVLTI   72 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHH-HHHHHSS------CC--EEEEEHHHHHHHCSEEEECS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hcccccc------CC--CChhhHHHHHhcCCEEEEeC
Confidence            799999 99999999999999999999999865331100000 0000000      00  01246788899999999999


Q ss_pred             cCCccccCCCCHHHHccCCCCcEEEEcCCCCCCC------------HHHHHHHHHhCCCeEEEEecCCCCCC
Q 019081          234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD------------YEAIAHYLECGHLGGLGIDVAWTEPF  293 (346)
Q Consensus       234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~~vd------------~~aL~~aL~~g~i~ga~lDV~~~EPl  293 (346)
                      |. ..++.++. +....++ +.++|+++.|--.+            .+.+.+.+..    ...++++.+.|.
T Consensus        73 ~~-~~~~~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~~  137 (212)
T 1jay_A           73 PW-EHAIDTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIPA  137 (212)
T ss_dssp             CH-HHHHHHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCCH
T ss_pred             Ch-hhHHHHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchHH
Confidence            83 34443332 2223344 89999999865432            4667776653    235788877764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.34  E-value=2.7e-07  Score=85.63  Aligned_cols=109  Identities=21%  Similarity=0.239  Sum_probs=76.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC---EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (346)
                      .++|||||+|+||..+++.+...|+   +|+++||+..+..                 .+...++  ...+..+++++||
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~-----------------~l~~~~gi~~~~~~~~~~~~aD   65 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLD-----------------FFKEKCGVHTTQDNRQGALNAD   65 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHH-----------------HHHHTTCCEEESCHHHHHSSCS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHH-----------------HHHHHcCCEEeCChHHHHhcCC
Confidence            4689999999999999999998898   8999999765421                 1111112  2357889999999


Q ss_pred             EEEEeecCCccccCCCCHHHHcc-CCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeE
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECG-HLGG  282 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~g  282 (346)
                      +|++++|. ...+.++. +.-.. ++++.++|+++-|  +..+.|.+.+..+ ++.+
T Consensus        66 vVilav~p-~~~~~vl~-~l~~~~l~~~~iiiS~~ag--i~~~~l~~~l~~~~~vvr  118 (280)
T 3tri_A           66 VVVLAVKP-HQIKMVCE-ELKDILSETKILVISLAVG--VTTPLIEKWLGKASRIVR  118 (280)
T ss_dssp             EEEECSCG-GGHHHHHH-HHHHHHHTTTCEEEECCTT--CCHHHHHHHHTCCSSEEE
T ss_pred             eEEEEeCH-HHHHHHHH-HHHhhccCCCeEEEEecCC--CCHHHHHHHcCCCCeEEE
Confidence            99999974 33444432 22233 6788899988655  3467777777653 4443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.33  E-value=5.8e-07  Score=85.42  Aligned_cols=119  Identities=20%  Similarity=0.176  Sum_probs=74.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccccc-CCcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~~~  232 (346)
                      ++|+|||+|.||..+|..|...|++|.++||+.......... .++.+....... .... ....+++++++.+|+|+++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR-GAIIAEGPGLAG-TAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-TSEEEESSSCCE-EECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhc-CCeEEecccccc-ccccceecCCHHHHHhcCCEEEEe
Confidence            589999999999999999999999999999865331110000 000000000000 0000 0135788888999999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      +|... +..++ ++....+++++++|+. -|.......+.+.+..
T Consensus        83 v~~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           83 VPAIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             SCGGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             CCchH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            99543 34444 3445568999999999 4423344456666655

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.31  E-value=5.6e-07  Score=89.91  Aligned_cols=155  Identities=17%  Similarity=0.135  Sum_probs=90.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc---cchhhhccccccc-----cccccCCcCCHHHHhh
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGIIDD-----LVDEKGCHEDIFEFAS  224 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~  224 (346)
                      -++|||||+|.||..+|..+...|++|++||++..........   .....+..+.+..     .........+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            3589999999999999999999999999999976432110000   0000000000000     000000124554 588


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEE-EEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK  303 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~  303 (346)
                      +||+|+.++|...+.+.-+-++..+.++++++| .|+|.-+   ...+.+++.. .-.-.++..|.+-|.        ++
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~---i~~ia~~~~~-p~~~ig~hf~~Pa~v--------~~  151 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS---ITAIAAEIKN-PERVAGLHFFNPAPV--------MK  151 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSC---HHHHTTTSSS-GGGEEEEEECSSTTT--------CC
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCC---HHHHHHHccC-ccceEEeeecChhhh--------CC
Confidence            999999999976555443444566678999998 5776543   3555555532 234466777764443        24


Q ss_pred             ceEEccCCCCCcHHHHHH
Q 019081          304 NVLITPHVGGVTEHSYRS  321 (346)
Q Consensus       304 nviiTPH~a~~t~~~~~~  321 (346)
                      -+.+.|+-. .+++....
T Consensus       152 Lvevv~g~~-Ts~e~~~~  168 (483)
T 3mog_A          152 LVEVVSGLA-TAAEVVEQ  168 (483)
T ss_dssp             EEEEEECSS-CCHHHHHH
T ss_pred             eEEEecCCC-CCHHHHHH
Confidence            566666532 23444443

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.31  E-value=1.2e-07  Score=86.54  Aligned_cols=98  Identities=22%  Similarity=0.380  Sum_probs=66.9

Q ss_pred             eEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~  231 (346)
                      +|||||+|.||+.+|+.|...| .+|.++||+.....                 .+...++  ...++++++ +||+|++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~-----------------~~~~~~g~~~~~~~~~~~-~~D~vi~   63 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRE-----------------RLEKELGVETSATLPELH-SDDVLIL   63 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHH-----------------HHHHHTCCEEESSCCCCC-TTSEEEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHH-----------------HHHHhcCCEEeCCHHHHh-cCCEEEE
Confidence            7999999999999999998889 99999998754311                 0111111  123556677 8999999


Q ss_pred             eecCCccccCCCCHHHHccCC-CCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMK-KGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk-~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      ++| ....+.++     ..++ ++.++|+++.|--  .+.|.+.+..+
T Consensus        64 ~v~-~~~~~~v~-----~~l~~~~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           64 AVK-PQDMEAAC-----KNIRTNGALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             CSC-HHHHHHHH-----TTCCCTTCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             EeC-chhHHHHH-----HHhccCCCEEEEecCCCC--HHHHHHHcCCC
Confidence            999 44443333     3332 2899999865533  36777777654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.25  E-value=1.2e-06  Score=85.46  Aligned_cols=119  Identities=12%  Similarity=0.123  Sum_probs=75.2

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc----cCCcCCHHHHhhcCCEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE----KGCHEDIFEFASKADVVV  230 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~ell~~aDiV~  230 (346)
                      +|+|||+|.||..+|..|.. |++|+++|++..+...-..  .+.+.......+....    .....++.+.++.||+|+
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~--~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvi   78 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINN--GLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVI   78 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHT--TCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHc--CCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEE
Confidence            79999999999999999998 9999999987543110000  0000000000000000    001246778889999999


Q ss_pred             EeecCCc----------cccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          231 CCLSLNK----------QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       231 ~~lPlt~----------~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +++|...          .++..+ +.... +++|.++|+.|.-++-..+.+.+.+.+.
T Consensus        79 iavpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           79 IATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             ECCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             EecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            9999642          122222 23344 8899999998887777777888777554

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.24  E-value=2.5e-06  Score=79.81  Aligned_cols=114  Identities=13%  Similarity=0.125  Sum_probs=76.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhcccccccccc---ccCCcCCHHHHhh
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKGCHEDIFEFAS  224 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~ell~  224 (346)
                      .++.+++++|+|.|.+|++++..|...|+ +|++++|+..+...-.             .....   ......++.+.+.
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la-------------~~~~~~~~~~~~~~~~~~~~~  203 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV-------------REGDERRSAYFSLAEAETRLA  203 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHH-------------HHSCSSSCCEECHHHHHHTGG
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-------------HHhhhccCceeeHHHHHhhhc
Confidence            35789999999999999999999999998 9999999754311000             00000   0001124667788


Q ss_pred             cCCEEEEeecCCccc--cC-CCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081          225 KADVVVCCLSLNKQT--AG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  280 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T--~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  280 (346)
                      ++|+|+.++|.....  .. .++   .+.++++.++++++-.+. .+ .|++..++..+
T Consensus       204 ~aDivIn~t~~~~~~~~~~~~i~---~~~l~~~~~v~D~~y~P~-~T-~ll~~A~~~G~  257 (297)
T 2egg_A          204 EYDIIINTTSVGMHPRVEVQPLS---LERLRPGVIVSDIIYNPL-ET-KWLKEAKARGA  257 (297)
T ss_dssp             GCSEEEECSCTTCSSCCSCCSSC---CTTCCTTCEEEECCCSSS-SC-HHHHHHHHTTC
T ss_pred             cCCEEEECCCCCCCCCCCCCCCC---HHHcCCCCEEEEcCCCCC-CC-HHHHHHHHCcC
Confidence            999999999976431  11 233   245789999999988543 33 36666665444

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.24  E-value=3.2e-06  Score=76.83  Aligned_cols=99  Identities=18%  Similarity=0.328  Sum_probs=66.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      ..+|||||+|.||+.+|+.|...|    .+|.+|||+....                  .. .   ...+..+++++||+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~~------------------g~-~---~~~~~~~~~~~~D~   61 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNT------------------TL-N---YMSSNEELARHCDI   61 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCSS------------------SS-E---ECSCHHHHHHHCSE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcccC------------------ce-E---EeCCHHHHHhcCCE
Confidence            358999999999999999998888    6899999865320                  00 0   12467888999999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      |++++|. ..++.++. +....++ +..+|...-|  ++.+.+.+.+..+
T Consensus        62 vi~~v~~-~~~~~v~~-~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           62 IVCAVKP-DIAGSVLN-NIKPYLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             EEECSCT-TTHHHHHH-HSGGGCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             EEEEeCH-HHHHHHHH-HHHHhcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            9999994 44444432 2333454 4555554433  3445666666554

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.20  E-value=1.2e-06  Score=87.36  Aligned_cols=122  Identities=11%  Similarity=0.122  Sum_probs=74.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc------ccCCcCCHHHHhhcC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD------EKGCHEDIFEFASKA  226 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~ell~~a  226 (346)
                      ..+|+|||+|.||..+|..|...|++|+++|++......-..  ...+.....+.+...      ......++++.+++|
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~--~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~a   85 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNN--GGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHG   85 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT--TCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHC
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHC--CCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcC
Confidence            358999999999999999999999999999987543110000  000000000000000      001235787889999


Q ss_pred             CEEEEeecCCc---------cccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          227 DVVVCCLSLNK---------QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       227 DiV~~~lPlt~---------~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      |+|++++|...         ..+..+ +.....+++|+++|+.|.-.+-..+.+.+.+.+
T Consensus        86 DvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           86 DVQFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            99999999421         122222 234456899999999984444445555555543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.20  E-value=1.2e-06  Score=80.82  Aligned_cols=104  Identities=22%  Similarity=0.139  Sum_probs=71.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  231 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~  231 (346)
                      ++++.|+|.|.+|++++..|...|.+|.+++|+..+..                 .+. +.+ ...+++++ +++|+|+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~-----------------~la-~~~~~~~~~~~l-~~~DiVIn  178 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLD-----------------FFQ-RLGCDCFMEPPK-SAFDLIIN  178 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHH-----------------HHH-HHTCEEESSCCS-SCCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHH-HCCCeEecHHHh-ccCCEEEE
Confidence            88999999999999999999999999999999865421                 111 100 01122222 38999999


Q ss_pred             eecCCccccCCCCHHHHc-cCCCCcEEEEcCCCCCCCHHHHHH-HHHhC
Q 019081          232 CLSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGLLDYEAIAH-YLECG  278 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~-~mk~gailIN~sRg~~vd~~aL~~-aL~~g  278 (346)
                      ++|........++.+.+. .++++.+++++...+  .+. |++ |-+.|
T Consensus       179 aTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P--~T~-ll~~A~~~G  224 (269)
T 3phh_A          179 ATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGF--LTP-FLSLAKELK  224 (269)
T ss_dssp             CCTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS--CCH-HHHHHHHTT
T ss_pred             cccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC--chH-HHHHHHHCc
Confidence            999764433346665333 567889999998876  444 554 44444

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.20  E-value=1.6e-06  Score=78.36  Aligned_cols=70  Identities=14%  Similarity=0.260  Sum_probs=55.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      ..+|||||+|.||.++|+.|+..|++|++|++.                                  ++ +++||  +++
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~----------------------------------~~-~~~aD--ila   48 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP----------------------------------ED-IRDFE--LVV   48 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG----------------------------------GG-GGGCS--EEE
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH----------------------------------HH-hccCC--EEE
Confidence            358999999999999999999999999998862                                  01 35789  888


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +|.. ....++ .+....+++|+++|+++
T Consensus        49 vP~~-ai~~vl-~~l~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           49 IDAH-GVEGYV-EKLSAFARRGQMFLHTS   75 (232)
T ss_dssp             ECSS-CHHHHH-HHHHTTCCTTCEEEECC
T ss_pred             EcHH-HHHHHH-HHHHHhcCCCCEEEEEC
Confidence            9965 555555 34555689999999985

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.20  E-value=1.1e-06  Score=87.69  Aligned_cols=122  Identities=13%  Similarity=0.118  Sum_probs=76.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccC--CCEEEEEcCCCccccccccccchhhhcccccccccc-----ccCCcCCHHHHhhcC
Q 019081          154 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-----EKGCHEDIFEFASKA  226 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~ell~~a  226 (346)
                      .+|+|||+|.||..+|..|...  |++|+++|++..+...-...  ..+.....+.+...     ......++.+.+++|
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g--~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a   87 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSD--KLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEA   87 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSS--SCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCC--CCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence            4899999999999999999876  79999999875431110000  00000000000000     000124677888999


Q ss_pred             CEEEEeecCCcccc-----------CCC--CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          227 DVVVCCLSLNKQTA-----------GIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       227 DiV~~~lPlt~~T~-----------~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      |+|++++|......           .+.  -+.....+++|.++|+.|.-.+-..+.+.+.+++
T Consensus        88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            99999998533211           111  1234566899999999987776667778888877

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.19  E-value=1.3e-06  Score=87.09  Aligned_cols=118  Identities=19%  Similarity=0.270  Sum_probs=75.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CC-EEEEEcCCCc----cccccccccchhhh--ccccccccccc---cC---CcCCH
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GV-KIIATKRSWA----SHSQVSCQSSALAV--KNGIIDDLVDE---KG---CHEDI  219 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~-~V~~~d~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~---~~---~~~~l  219 (346)
                      ++|+|||+|.+|..+|..+... |+ +|++||++..    ....-...  ..+.  ....+.++..+   .+   ...+ 
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g--~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-   95 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRG--ESPLKGEEPGLEELIGKVVKAGKFECTPD-   95 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTT--CCCSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhc--CCCccccCCCHHHHHHhhcccCCeEEeCc-
Confidence            5899999999999999999999 99 9999999866    21000000  0000  00000000000   11   1234 


Q ss_pred             HHHhhcCCEEEEeecCCcccc--------CCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHH
Q 019081          220 FEFASKADVVVCCLSLNKQTA--------GIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHY  274 (346)
Q Consensus       220 ~ell~~aDiV~~~lPlt~~T~--------~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~a  274 (346)
                      .+.+++||+|++++|......        .+..  +.....+++|.++|+.|.-++-..+.+.+.
T Consensus        96 ~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           96 FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence            678899999999999543222        2221  345667999999999998888777777764

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.18  E-value=2.3e-06  Score=78.61  Aligned_cols=98  Identities=19%  Similarity=0.226  Sum_probs=63.9

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP  234 (346)
                      +|+|||+|.||..+|..|...|.+|.++||+...... ... .+   .++  ...... ....+ .+.++.+|+|++++|
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~-l~~-~~---~~~--~~~~~~-~~~~~-~~~~~~~d~vi~~v~   72 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCS-VNL-VE---TDG--SIFNES-LTAND-PDFLATSDLLLVTLK   72 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEE-EEE-EC---TTS--CEEEEE-EEESC-HHHHHTCSEEEECSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceee-EEE-Ec---CCC--ceeeee-eeecC-ccccCCCCEEEEEec
Confidence            7999999999999999999999999999987643211 000 00   000  000000 01123 467789999999999


Q ss_pred             CCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          235 LNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      .. .++.++ ++....++++.++|++.-|
T Consensus        73 ~~-~~~~v~-~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           73 AW-QVSDAV-KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             GG-GHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             HH-hHHHHH-HHHHhhCCCCCEEEEecCC
Confidence            64 444444 3344567889999998655

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.17  E-value=1.4e-06  Score=77.68  Aligned_cols=91  Identities=30%  Similarity=0.331  Sum_probs=60.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEE-EcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  229 (346)
                      -++++|||+|.||..+|+.+...|++|++ +||+..+..                 .+....+  ...+..+.++++|+|
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~-----------------~l~~~~g~~~~~~~~~~~~~aDvV   85 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLS-----------------SVTDRFGASVKAVELKDALQADVV   85 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGH-----------------HHHHHHTTTEEECCHHHHTTSSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHH-----------------HHHHHhCCCcccChHHHHhcCCEE
Confidence            36899999999999999999988999998 998754321                 1111111  112445668899999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      ++++|. ...+.++.  .+.. .++.++|+++-|-
T Consensus        86 ilavp~-~~~~~v~~--~l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A           86 ILAVPY-DSIADIVT--QVSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             EEESCG-GGHHHHHT--TCSC-CTTCEEEECCCCB
T ss_pred             EEeCCh-HHHHHHHH--Hhhc-cCCCEEEEcCCCC
Confidence            999983 22222221  1222 3588999998553

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.15  E-value=1.1e-06  Score=82.85  Aligned_cols=115  Identities=18%  Similarity=0.143  Sum_probs=70.9

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcC--CCccccccccccchhhhccccccccccccCCcC--CHHHHhhcCCEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKR--SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE--DIFEFASKADVVV  230 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ell~~aDiV~  230 (346)
                      +|+|||+|.||..+|..|...|.+|+++||  +.........  .+.....+ . .. .......  ++.+.++.||+|+
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~--~~~~~~~g-~-~~-~~~~~~~~~~~~~~~~~~D~vi   76 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA--GREHPRLG-V-KL-NGVEIFWPEQLEKCLENAEVVL   76 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT--TCCBTTTT-B-CC-CSEEEECGGGHHHHHTTCSEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH--hCcCcccC-c-cc-cceEEecHHhHHHHHhcCCEEE
Confidence            799999999999999999988999999998  5432110000  00000000 0 00 0000112  6778889999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCC---CC-CHHHHHHHHHh
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG---LL-DYEAIAHYLEC  277 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~---~v-d~~aL~~aL~~  277 (346)
                      +++|.. .+..++ .+... ++++.++|+++.|-   -. ..+.+.+.+.+
T Consensus        77 ~~v~~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           77 LGVSTD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             ECSCGG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             EcCChH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            999954 444444 23334 78899999998774   11 23455566654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.14  E-value=4.2e-06  Score=83.12  Aligned_cols=156  Identities=15%  Similarity=0.131  Sum_probs=85.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchh--hhccccccc-ccccc-C-CcCCHHHHhhcC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGIIDD-LVDEK-G-CHEDIFEFASKA  226 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~--~~~~~~~~~-~~~~~-~-~~~~l~ell~~a  226 (346)
                      -++|+|||+|.||..+|..+...|++|+++|++.......... ...+  .++.+.+.. ..... . ...++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            4689999999999999999999999999999875431110000 0000  000000000 00000 0 12455 567899


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+.++|...+.+.-+-++....++++++|+.. ..+ +....|.+++... -.-+++..|.  |.      ..++.+.
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~sn-Ts~-~~~~~la~~~~~~-~~~ig~hf~~--P~------~~~~lve  184 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTN-TSA-LNVDDIASSTDRP-QLVIGTHFFS--PA------HVMRLLE  184 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC-CSS-SCHHHHHTTSSCG-GGEEEEEECS--ST------TTCCEEE
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeC-CCC-cCHHHHHHHhcCC-cceEEeecCC--Cc------ccceeEE
Confidence            9999999964333332333445568999999863 333 3444666655421 2234566663  32      1245566


Q ss_pred             EccCCCCCcHHHHHH
Q 019081          307 ITPHVGGVTEHSYRS  321 (346)
Q Consensus       307 iTPH~a~~t~~~~~~  321 (346)
                      +.++..+ +++....
T Consensus       185 vv~g~~t-~~e~~~~  198 (463)
T 1zcj_A          185 VIPSRYS-SPTTIAT  198 (463)
T ss_dssp             EEECSSC-CHHHHHH
T ss_pred             EeCCCCC-CHHHHHH
Confidence            6665443 3444433

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.12  E-value=2.4e-06  Score=82.72  Aligned_cols=83  Identities=24%  Similarity=0.357  Sum_probs=69.5

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCC---EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      ...+|.|||. |.+|+..++.++++|+   .|.++|++....                        +.  .+ +.+.++|
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------------------------g~--~~-~~i~~aD  265 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------------------------GG--PF-DEIPQAD  265 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------------------------CS--CC-THHHHSS
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------------------------CC--ch-hhHhhCC
Confidence            3568899999 9999999999999998   899999754210                        00  12 3466899


Q ss_pred             EEEEeecCCccccCCCCHHHHccC-CCCcEEEEcC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIA  261 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~m-k~gailIN~s  261 (346)
                      +|+.++........+|+++.++.| |||++||++|
T Consensus       266 ivIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          266 IFINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             EEEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             EEEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            999999997788899999999999 9999999997

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.11  E-value=1.6e-06  Score=83.19  Aligned_cols=111  Identities=11%  Similarity=0.033  Sum_probs=71.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccc-ccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC-QSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .++|+|||.|.+|..+|..|...|.+|.+|+|+......-.. .......+ +.  .+........++++.++.||+|++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~-g~--~l~~~i~~t~d~~ea~~~aDvVil  105 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLP-NY--PFPETLKAYCDLKASLEGVTDILI  105 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBT-TC--CCCTTEEEESCHHHHHTTCCEEEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCC-CC--ccCCCeEEECCHHHHHhcCCEEEE
Confidence            468999999999999999999999999999986432110000 00000000 00  000000013588899999999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY  268 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~  268 (346)
                      ++|. ...+.++ ++....+++++++|+++-|=..++
T Consensus       106 aVp~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t  140 (356)
T 3k96_A          106 VVPS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGS  140 (356)
T ss_dssp             CCCH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTT
T ss_pred             CCCH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCc
Confidence            9994 3444444 334456889999999987765543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.09  E-value=2.6e-05  Score=75.18  Aligned_cols=106  Identities=16%  Similarity=0.225  Sum_probs=77.2

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC----Cccccc-cccccchhhhccccccccccccCCcCCHHH
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS----WASHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFE  221 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  221 (346)
                      +..+.+.+|.|+|.|..|..+|+.+.+.|. +|+.+|++    ..+... -......|+..       ........+|.|
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~-------~~~~~~~~~L~e  259 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARI-------TNPERLSGDLET  259 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHT-------SCTTCCCSCHHH
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHh-------hhccCchhhHHH
Confidence            457899999999999999999999999999 89999997    322100 00000001100       000113468999


Q ss_pred             HhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          222 FASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       222 ll~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      .++.+|+++-+.     +.++++++.++.|+++++++.+|+...
T Consensus       260 av~~ADVlIG~S-----ap~l~t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          260 ALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             HHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             HHccCCEEEEeC-----CCCccCHHHHHhcCCCCEEEEcCCCCC
Confidence            999999998873     248999999999999999999997653

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.09  E-value=2.6e-06  Score=70.81  Aligned_cols=103  Identities=16%  Similarity=0.242  Sum_probs=74.6

Q ss_pred             cCCCeEEEEec----CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          151 LLGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       151 l~g~tvgIiG~----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      ..-++|+|||+    |.+|..+++.+...|++|+.+|++....                  ....   .+.++.|+.+..
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i------------------~G~~---~~~s~~el~~~v   70 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------------------EGLK---CYRSVRELPKDV   70 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------------------TTEE---CBSSGGGSCTTC
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE------------------CCee---ecCCHHHhCCCC
Confidence            45678999999    9999999999999999988888753210                  0111   346788888899


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      |++++++| .+....++.+ ..+ ...++++++++.    ..+++.++.++..+.
T Consensus        71 Dlvii~vp-~~~v~~v~~~-~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           71 DVIVFVVP-PKVGLQVAKE-AVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             CEEEECSC-HHHHHHHHHH-HHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             CEEEEEeC-HHHHHHHHHH-HHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            99999999 5666666643 333 566777777743    267888888876665

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.08  E-value=4.8e-06  Score=87.01  Aligned_cols=156  Identities=15%  Similarity=0.099  Sum_probs=88.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccc---ccchhhhccccccc-----cccccCCcCCHHHHhh
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD-----LVDEKGCHEDIFEFAS  224 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~  224 (346)
                      =++|||||+|.||..+|..+...|++|++||++.........   ......++.+.+..     .........++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            457999999999999999999899999999987543211000   00000000000000     00000012355 6688


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFK  303 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~  303 (346)
                      +||+|+.++|...+.+.-+-++..+.++++++|+ |+|.   +....+.+.+.. .-.-.++..|.  |.      ..++
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt---l~i~~la~~~~~-~~~~ig~hf~~--P~------~~~~  460 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST---ISISLLAKALKR-PENFVGMHFFN--PV------HMMP  460 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS---SCHHHHGGGCSC-GGGEEEEECCS--ST------TTCC
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC---CCHHHHHHHhcC-ccceEEEEccC--Cc------ccCc
Confidence            9999999999776544434455566789999987 5543   334456555532 11235667665  32      2345


Q ss_pred             ceEEccCCCCCcHHHHHHH
Q 019081          304 NVLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       304 nviiTPH~a~~t~~~~~~~  322 (346)
                      .+.+.++-. .++++.+.+
T Consensus       461 lvevv~g~~-t~~e~~~~~  478 (715)
T 1wdk_A          461 LVEVIRGEK-SSDLAVATT  478 (715)
T ss_dssp             EEEEEECSS-CCHHHHHHH
T ss_pred             eEEEEECCC-CCHHHHHHH
Confidence            666666432 244544443

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.07  E-value=1.8e-06  Score=82.09  Aligned_cols=111  Identities=15%  Similarity=0.141  Sum_probs=68.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCC-------CEEEEEcCCCccccc-cccccchhhhccccccc--cccccCCcCCHHHH
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWASHSQ-VSCQSSALAVKNGIIDD--LVDEKGCHEDIFEF  222 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G-------~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~el  222 (346)
                      .++|+|||+|.||..+|..|...|       .+|.++|++...... .................  .........+++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            358999999999999999998778       899999987541100 00000000000000000  00000012578888


Q ss_pred             hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          223 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      +++||+|++++|. ..++.++ ++....+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            9999999999994 4444443 233345788999999988754

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.05  E-value=1.4e-06  Score=80.96  Aligned_cols=121  Identities=14%  Similarity=0.144  Sum_probs=71.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh---cCCEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~  230 (346)
                      .+|+|||+|.||..+|..|...|.+|+++||+.........  .+......  ...........+..++.+   ++|+|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~--~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRK--NGLIADFN--GEEVVANLPIFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH--HCEEEEET--TEEEEECCCEECGGGCCTTSCCCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh--CCEEEEeC--CCeeEecceeecchhhcccCCCCCEEE
Confidence            48999999999999999999889999999986532110000  00000000  000000001112334444   899999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +++|. ..+..++ ++....++++.++|+++.| +-..+.+.+.+...++.
T Consensus        80 ~~v~~-~~~~~v~-~~l~~~l~~~~~iv~~~~g-~~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           80 ALTKA-QQLDAMF-KAIQPMITEKTYVLCLLNG-LGHEDVLEKYVPKENIL  127 (316)
T ss_dssp             ECSCH-HHHHHHH-HHHGGGCCTTCEEEECCSS-SCTHHHHTTTSCGGGEE
T ss_pred             EEecc-ccHHHHH-HHHHHhcCCCCEEEEecCC-CCcHHHHHHHcCCccEE
Confidence            99994 3444444 2344567899999999764 32345666666554443

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.03  E-value=6.2e-06  Score=86.28  Aligned_cols=155  Identities=15%  Similarity=0.076  Sum_probs=87.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccccc---ccchhhhccccccc-----cccccCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC---QSSALAVKNGIIDD-----LVDEKGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~l~ell~~  225 (346)
                      ++|||||+|.||..+|..+...|++|+++|++.........   ......++.+.+..     .........++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            67999999999999999999999999999997543111000   00000000000000     00000012355 56899


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEE-EcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCc
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN  304 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n  304 (346)
                      ||+|+.++|...+.+.-+-++..+.++++++|+ |+|.   +....+.+.++. .-.-.++..|.  |.      ..++.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt---l~i~~la~~~~~-p~~~iG~hf~~--P~------~~~~l  459 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST---IDLNKIGERTKS-QDRIVGAHFFS--PA------HIMPL  459 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS---SCHHHHTTTCSC-TTTEEEEEECS--ST------TTCCE
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC---CCHHHHHHHhcC-CCCEEEecCCC--Cc------ccCce
Confidence            999999999765544433345556789999985 4543   333455555432 11235666665  32      23456


Q ss_pred             eEEccCCCCCcHHHHHHH
Q 019081          305 VLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       305 viiTPH~a~~t~~~~~~~  322 (346)
                      +.+.++-. .++++.+.+
T Consensus       460 vevv~g~~-t~~e~~~~~  476 (725)
T 2wtb_A          460 LEIVRTNH-TSAQVIVDL  476 (725)
T ss_dssp             EEEEECSS-CCHHHHHHH
T ss_pred             EEEEECCC-CCHHHHHHH
Confidence            66666432 244444443

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.00  E-value=8.4e-07  Score=85.03  Aligned_cols=107  Identities=15%  Similarity=0.164  Sum_probs=67.3

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhh--hccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA--VKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      +|+|||+|.||..+|..|...|++|.+|||+.........  .+..  +..+.  ..........++.++++.||+|+++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~aDvVila   92 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNE--KRENVLFLKGV--QLASNITFTSDVEKAYNGAEIILFV   92 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHH--HTBCTTTSTTC--BCCTTEEEESCHHHHHTTCSSEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH--cCccccccccc--ccccceeeeCCHHHHHcCCCEEEEC
Confidence            8999999999999999999889999999987532110000  0000  00000  0000000125788889999999999


Q ss_pred             ecCCccccCCCCHH---HHccCCC-CcEEEEcCCCCCC
Q 019081          233 LSLNKQTAGIVNKS---FLSSMKK-GSLLVNIARGGLL  266 (346)
Q Consensus       233 lPlt~~T~~li~~~---~l~~mk~-gailIN~sRg~~v  266 (346)
                      +|. ..++.++...   ....+++ +.++|+++.|-..
T Consensus        93 v~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           93 IPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             CCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             CCh-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            994 4444444320   3344677 9999999877443

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.00  E-value=6e-06  Score=81.33  Aligned_cols=153  Identities=13%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc---cC---CcCCHHHHhhc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE---KG---CHEDIFEFASK  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~l~ell~~  225 (346)
                      +-++++|||+|.+|..+|..+...|++|+++|.+..+-..-...  ..+..+-.++++..+   .+   ...+.++.++.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G--~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~   97 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAG--RPHIYEPGLEEALGRALSSGRLSFAESAEEAVAA   97 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTT--CCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCC--CCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhc
Confidence            45699999999999999999998999999999875431000000  000000000111111   11   13578899999


Q ss_pred             CCEEEEeecCCccc-cCCCC--------HHHHccCC---CCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe-cCCCCC
Q 019081          226 ADVVVCCLSLNKQT-AGIVN--------KSFLSSMK---KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTEP  292 (346)
Q Consensus       226 aDiV~~~lPlt~~T-~~li~--------~~~l~~mk---~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EP  292 (346)
                      ||++++|+| ||.. .+-.|        +..-+.|+   +|.++|.-|.-.+-.++.++.-+.+.+-.|.-++ +|.+|=
T Consensus        98 ad~~~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PEr  176 (444)
T 3vtf_A           98 TDATFIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEF  176 (444)
T ss_dssp             SSEEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCCC
T ss_pred             CCceEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCccc
Confidence            999999998 4432 22222        11222344   6889999999888777776554433222222222 246776


Q ss_pred             CCCCC---CCCCCCceEE
Q 019081          293 FDPND---PILKFKNVLI  307 (346)
Q Consensus       293 l~~~~---pL~~~~nvii  307 (346)
                      +.+.+   .+...++|++
T Consensus       177 l~eG~a~~d~~~~~riVi  194 (444)
T 3vtf_A          177 LREGSALEDFFKPDRIVI  194 (444)
T ss_dssp             CCTTSHHHHHHSCSCEEE
T ss_pred             ccCCccccccccCCcEEE
Confidence            65554   3445566653

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.00  E-value=4.5e-06  Score=75.15  Aligned_cols=95  Identities=23%  Similarity=0.233  Sum_probs=70.0

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEE-EEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh-hcCCEEEEe
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCC  232 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~~~  232 (346)
                      +|||||+|.||+.+++.+..-|+++ .++|++...                  ..      ...++++++ .++|+|+++
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~------------------~~------~~~~~~~l~~~~~DvVv~~   57 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEH------------------EK------MVRGIDEFLQREMDVAVEA   57 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCC------------------TT------EESSHHHHTTSCCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcch------------------hh------hcCCHHHHhcCCCCEEEEC
Confidence            7999999999999999988789997 688876311                  01      135788988 699999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH---HHHHHHHHhC
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECG  278 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g  278 (346)
                      +|.... .    +.....++.|..+|..+-+..-+.   +.|.++.++.
T Consensus        58 ~~~~~~-~----~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~  101 (236)
T 2dc1_A           58 ASQQAV-K----DYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKT  101 (236)
T ss_dssp             SCHHHH-H----HHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHH
T ss_pred             CCHHHH-H----HHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhc
Confidence            984321 1    222345778999999988776655   5777777653

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.95  E-value=2.5e-06  Score=80.81  Aligned_cols=98  Identities=20%  Similarity=0.308  Sum_probs=62.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      .+++|||+|.||..+|..|...|.+|.+++|+......-..  .+...   .............+..+ ++.+|+|++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~--~g~~~---~~~~~~~~~~~~~~~~~-~~~aDvVil~v   88 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINV--SHTSP---YVEESKITVRATNDLEE-IKKEDILVIAI   88 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH--HSCBT---TBTTCCCCSEEESCGGG-CCTTEEEEECS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH--hCCcc---cCCCCeeeEEEeCCHHH-hcCCCEEEEEC
Confidence            48999999999999999999889999999986432110000  00000   00000000011246777 88999999999


Q ss_pred             cCCccccCCCCHHHHccCC-CCcEEEEcCCC
Q 019081          234 SLNKQTAGIVNKSFLSSMK-KGSLLVNIARG  263 (346)
Q Consensus       234 Plt~~T~~li~~~~l~~mk-~gailIN~sRg  263 (346)
                      |. ..++.++     ..++ ++.++|+++-|
T Consensus        89 k~-~~~~~v~-----~~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           89 PV-QYIREHL-----LRLPVKPSMVLNLSKG  113 (335)
T ss_dssp             CG-GGHHHHH-----TTCSSCCSEEEECCCC
T ss_pred             CH-HHHHHHH-----HHhCcCCCEEEEEeCC
Confidence            94 5544433     3344 78999999876

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.95  E-value=3.2e-06  Score=70.76  Aligned_cols=104  Identities=14%  Similarity=0.137  Sum_probs=73.5

Q ss_pred             CCeEEEEec----CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          153 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       153 g~tvgIiG~----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      -++|+|||+    |++|..+++.+...|++|+.+|+......                .....   .+.++.++....|+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~----------------i~G~~---~~~sl~el~~~~Dl   73 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT----------------LLGQQ---GYATLADVPEKVDM   73 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE----------------ETTEE---CCSSTTTCSSCCSE
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc----------------cCCee---ccCCHHHcCCCCCE
Confidence            568999999    89999999999999999888887541000                00111   23567777788999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      +++++| .+....++.+ ..+ ...++++++.+  ..  ++++.+++++..+.-
T Consensus        74 vii~vp-~~~v~~v~~~-~~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~~  120 (145)
T 2duw_A           74 VDVFRN-SEAAWGVAQE-AIA-IGAKTLWLQLG--VI--NEQAAVLAREAGLSV  120 (145)
T ss_dssp             EECCSC-STHHHHHHHH-HHH-HTCCEEECCTT--CC--CHHHHHHHHTTTCEE
T ss_pred             EEEEeC-HHHHHHHHHH-HHH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCEE
Confidence            999999 4666666643 333 55677777753  22  788889888876653

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.94  E-value=2.4e-06  Score=82.31  Aligned_cols=105  Identities=14%  Similarity=0.199  Sum_probs=65.7

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC-------CEEEEEcCCCc-----ccccccc-ccchhhhccccccccccccCCcCCHH
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWA-----SHSQVSC-QSSALAVKNGIIDDLVDEKGCHEDIF  220 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~  220 (346)
                      ++|+|||+|.||..+|..|...|       .+|.+|||+..     ....-.. ..... +..+.  ..........++.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~-~~~~~--~~~~~i~~~~~~~   98 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTK-YLKGV--PLPHNIVAHSDLA   98 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTT-TSTTC--BCCTTEEEESSTH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccc-cCCcc--cCcCCeEEECCHH
Confidence            47999999999999999998778       89999998754     1100000 00000 00000  0000000135678


Q ss_pred             HHhhcCCEEEEeecCCccccCCCCHHHHc----cCCCCcEEEEcCCC
Q 019081          221 EFASKADVVVCCLSLNKQTAGIVNKSFLS----SMKKGSLLVNIARG  263 (346)
Q Consensus       221 ell~~aDiV~~~lPlt~~T~~li~~~~l~----~mk~gailIN~sRg  263 (346)
                      +++++||+|++++|. ...+.++. +...    .++++.++|+++.|
T Consensus        99 ea~~~aDvVilav~~-~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~G  143 (375)
T 1yj8_A           99 SVINDADLLIFIVPC-QYLESVLA-SIKESESIKIASHAKAISLTKG  143 (375)
T ss_dssp             HHHTTCSEEEECCCH-HHHHHHHH-HHTC---CCCCTTCEEEECCCS
T ss_pred             HHHcCCCEEEEcCCH-HHHHHHHH-HHhhhhhccCCCCCEEEEeCCc
Confidence            889999999999994 44444432 2233    57889999999877

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.91  E-value=2.5e-06  Score=78.71  Aligned_cols=86  Identities=15%  Similarity=0.118  Sum_probs=53.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEE-EEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~  231 (346)
                      .+|||||+|.||+.+++.+... ++| .++|++......                 .....+ ...++++++++||+|++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~-----------------~~~~~g~~~~~~~~~~~~~DvVil   64 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARN-----------------LAEVYGGKAATLEKHPELNGVVFV   64 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHH-----------------HHHHTCCCCCSSCCCCC---CEEE
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHH-----------------HHHHcCCccCCHHHHHhcCCEEEE
Confidence            3799999999999999999877 888 489986543110                 100101 22456677788999999


Q ss_pred             eecCCccccCCCCHHHHccC-CCCcEEEEcCCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSM-KKGSLLVNIARG  263 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~m-k~gailIN~sRg  263 (346)
                      ++|... .     .+.+..+ +++.++||++-+
T Consensus        65 av~~~~-~-----~~v~~~l~~~~~ivi~~s~~   91 (276)
T 2i76_A           65 IVPDRY-I-----KTVANHLNLGDAVLVHCSGF   91 (276)
T ss_dssp             CSCTTT-H-----HHHHTTTCCSSCCEEECCSS
T ss_pred             eCChHH-H-----HHHHHHhccCCCEEEECCCC
Confidence            999643 2     3444444 688999999854

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.89  E-value=3.2e-05  Score=64.74  Aligned_cols=104  Identities=14%  Similarity=0.114  Sum_probs=61.5

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC---HHHH-h
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-A  223 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l  223 (346)
                      .....++++.|+|+|.+|+.+++.|+..|.+|+++|++.......... .+.        ...  .+...+   +.+. +
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~-~g~--------~~~--~~d~~~~~~l~~~~~   82 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSE-FSG--------FTV--VGDAAEFETLKECGM   82 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTT-CCS--------EEE--ESCTTSHHHHHTTTG
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhc-CCC--------cEE--EecCCCHHHHHHcCc
Confidence            355678899999999999999999999999999999876432110000 000        000  011122   3333 5


Q ss_pred             hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      ..+|+|++++|....+.  .-....+.+.+...+|-..++.
T Consensus        83 ~~ad~Vi~~~~~~~~~~--~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           83 EKADMVFAFTNDDSTNF--FISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             GGCSEEEECSSCHHHHH--HHHHHHHHTSCCSEEEEECSSG
T ss_pred             ccCCEEEEEeCCcHHHH--HHHHHHHHHCCCCeEEEEECCH
Confidence            78999999998533221  1122344445556666665554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.89  E-value=5.1e-06  Score=71.45  Aligned_cols=98  Identities=17%  Similarity=0.157  Sum_probs=63.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCC---HHHH-
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHED---IFEF-  222 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---l~el-  222 (346)
                      .++.+++++|+|+|.+|+.+|+.|+.. |++|+++|++.........             .... ..+...+   +.++ 
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~-------------~g~~~~~gd~~~~~~l~~~~  101 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS-------------EGRNVISGDATDPDFWERIL  101 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH-------------TTCCEEECCTTCHHHHHTBC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH-------------CCCCEEEcCCCCHHHHHhcc
Confidence            457788999999999999999999998 9999999987543110000             0000 0111122   3444 


Q ss_pred             -hhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          223 -ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       223 -l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                       +.++|+|++++|..+.+..++  ..++.+.+...+|..+
T Consensus       102 ~~~~ad~vi~~~~~~~~~~~~~--~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          102 DTGHVKLVLLAMPHHQGNQTAL--EQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             SCCCCCEEEECCSSHHHHHHHH--HHHHHTTCCSEEEEEE
T ss_pred             CCCCCCEEEEeCCChHHHHHHH--HHHHHHCCCCEEEEEE
Confidence             678999999998644433322  3455666666666543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.87  E-value=3.1e-05  Score=71.23  Aligned_cols=99  Identities=12%  Similarity=0.118  Sum_probs=64.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc-cCCcCCHHHHh-hcC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFA-SKA  226 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell-~~a  226 (346)
                      .++.|+++.|+|.|.+|+++++.|...|.+|++++|+..+......             ..... .....+++++. .++
T Consensus       115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~-------------~~~~~~~~~~~~~~~~~~~~~  181 (271)
T 1nyt_A          115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK-------------LFAHTGSIQALSMDELEGHEF  181 (271)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-------------HTGGGSSEEECCSGGGTTCCC
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH-------------HhhccCCeeEecHHHhccCCC
Confidence            3578999999999999999999999999999999987543111000             00000 00012233333 589


Q ss_pred             CEEEEeecCCccccCC--CCHHHHccCCCCcEEEEcCCCC
Q 019081          227 DVVVCCLSLNKQTAGI--VNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       227 DiV~~~lPlt~~T~~l--i~~~~l~~mk~gailIN~sRg~  264 (346)
                      |+|+.++|..... .+  +..+   .++++.+++|+.-..
T Consensus       182 DivVn~t~~~~~~-~~~~i~~~---~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          182 DLIINATSSGISG-DIPAIPSS---LIHPGIYCYDMFYQK  217 (271)
T ss_dssp             SEEEECCSCGGGT-CCCCCCGG---GCCTTCEEEESCCCS
T ss_pred             CEEEECCCCCCCC-CCCCCCHH---HcCCCCEEEEeccCC
Confidence            9999999965431 11  3322   257889999988765

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.85  E-value=8.2e-06  Score=75.24  Aligned_cols=105  Identities=15%  Similarity=0.111  Sum_probs=62.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc-cCCcCCHHHHhh-cC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFAS-KA  226 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~-~a  226 (346)
                      .++.+++++|+|.|.+|++++..|...|.+|++++|+..+...-..             ..... .....+++++.+ ++
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~-------------~~~~~~~~~~~~~~~~~~~~~  181 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAE-------------RFQPYGNIQAVSMDSIPLQTY  181 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHH-------------HHGGGSCEEEEEGGGCCCSCC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------------HccccCCeEEeeHHHhccCCC
Confidence            4578999999999999999999999999999999997543211000             00000 000122333333 89


Q ss_pred             CEEEEeecCCccccC-CCCHHHHccCCCCcEEEEcCCCCCCCHH
Q 019081          227 DVVVCCLSLNKQTAG-IVNKSFLSSMKKGSLLVNIARGGLLDYE  269 (346)
Q Consensus       227 DiV~~~lPlt~~T~~-li~~~~l~~mk~gailIN~sRg~~vd~~  269 (346)
                      |+|+.++|......- -++.+.   ++++.+++++.-.+..++.
T Consensus       182 DivIn~t~~~~~~~~~~i~~~~---l~~~~~v~D~~y~p~~~t~  222 (272)
T 1p77_A          182 DLVINATSAGLSGGTASVDAEI---LKLGSAFYDMQYAKGTDTP  222 (272)
T ss_dssp             SEEEECCCC-------CCCHHH---HHHCSCEEESCCCTTSCCH
T ss_pred             CEEEECCCCCCCCCCCCCCHHH---cCCCCEEEEeeCCCCcCCH
Confidence            999999996543110 133332   3456677777665544344

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.84  E-value=6.9e-05  Score=72.35  Aligned_cols=190  Identities=16%  Similarity=0.180  Sum_probs=115.1

Q ss_pred             CcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-
Q 019081           99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-  177 (346)
Q Consensus        99 gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-  177 (346)
                      .|+|.|. +.     ..+|=-+++.++..+|                ..|..+...+|.|+|.|..|..+|+.+.++|. 
T Consensus       156 ~ipvf~D-Di-----qGTa~V~lAall~al~----------------l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~  213 (398)
T 2a9f_A          156 HIPVFHD-DQ-----HGTAIVVLAAIFNSLK----------------LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGAT  213 (398)
T ss_dssp             SSCEEEH-HH-----HHHHHHHHHHHHHHHH----------------TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             Ccceecc-hh-----hhHHHHHHHHHHHHHH----------------HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCC
Confidence            5788874 21     3344455555555554                13568999999999999999999999999999 


Q ss_pred             EEEEEcCCCcc---c-cccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCC
Q 019081          178 KIIATKRSWAS---H-SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKK  253 (346)
Q Consensus       178 ~V~~~d~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~  253 (346)
                      +|+.+|++.--   . ..-......|+       ..........+|.|.++.+|+++-.     .+.+++.++.++.|++
T Consensus       214 ~I~v~D~~Gli~~~R~~~L~~~k~~fa-------~~~~~~~~~~~L~eav~~ADV~IG~-----Sapgl~T~EmVk~Ma~  281 (398)
T 2a9f_A          214 KVTVVDKFGIINEQEAAQLAPHHLDIA-------KVTNREFKSGTLEDALEGADIFIGV-----SAPGVLKAEWISKMAA  281 (398)
T ss_dssp             EEEEEETTEECCTTCCCSCCC---CHH-------HHHSCTTCCCSCSHHHHTTCSEEEC-----CSTTCCCHHHHHTSCS
T ss_pred             eEEEEECCCcccCCccccchHHHHHHh-------hccCcccchhhHHHHhccCCEEEec-----CCCCCCCHHHHHhhCC
Confidence            99999986310   0 00000000000       0000011245799999999998876     2468999999999999


Q ss_pred             CcEEEEcCCCCCCCHHHHHHHHHhCC-CeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCCcH-----HHHHHHHHHHH
Q 019081          254 GSLLVNIARGGLLDYEAIAHYLECGH-LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTE-----HSYRSMAKVVG  327 (346)
Q Consensus       254 gailIN~sRg~~vd~~aL~~aL~~g~-i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~t~-----~~~~~~~~~~~  327 (346)
                      +++++.+|+...  |-.=.+|.+.|+ |.+-|      -   .+.| =..-|+++-|=++-..-     ...+.|...++
T Consensus       282 ~pIIfalsNPt~--E~~pe~a~~~g~~i~atG------r---s~~p-~Q~NN~~~FPgi~~Gal~~~a~~I~d~m~~aAa  349 (398)
T 2a9f_A          282 RPVIFAMANPIP--EIYPDEALEAGAYIVGTG------R---SDFP-NQINNVLAFPGIFRGALDARAKTITVEMQIAAA  349 (398)
T ss_dssp             SCEEEECCSSSC--SSCHHHHHTTTCSEEEES------C---TTSS-SBCCGGGTHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CCEEEECCCCCc--cCCHHHHHHhCCeEEEeC------C---CCCC-CcCCceeEcchHHHHHHHcCCcCCCHHHHHHHH
Confidence            999999998764  222223334465 43333      0   1111 13467777775442111     11144555555


Q ss_pred             HHHHHHH
Q 019081          328 DVALQLH  334 (346)
Q Consensus       328 ~ni~~~~  334 (346)
                      +-|-.+.
T Consensus       350 ~alA~~~  356 (398)
T 2a9f_A          350 KGIASLV  356 (398)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            5555544

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.82  E-value=9.6e-06  Score=75.35  Aligned_cols=114  Identities=16%  Similarity=0.112  Sum_probs=71.7

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhcccccccccccc-CCcCCHHHHhhc
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASK  225 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~  225 (346)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|.+++|+..+...-..             ...... ....+++++.++
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~-------------~~~~~~~~~~~~~~~l~~~  187 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAE-------------LVAAYGEVKAQAFEQLKQS  187 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHH-------------HHGGGSCEEEEEGGGCCSC
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHH-------------HhhccCCeeEeeHHHhcCC
Confidence            356889999999999999999999999997 99999997643211000             000000 011244455578


Q ss_pred             CCEEEEeecCCcccc-CCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          226 ADVVVCCLSLNKQTA-GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       226 aDiV~~~lPlt~~T~-~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +|+|+.++|...... -.++.   +.++++++++++.-.+ ..+.-|.+|-+.|
T Consensus       188 aDiIInaTp~gm~~~~~~l~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  237 (281)
T 3o8q_A          188 YDVIINSTSASLDGELPAIDP---VIFSSRSVCYDMMYGK-GYTVFNQWARQHG  237 (281)
T ss_dssp             EEEEEECSCCCC----CSCCG---GGEEEEEEEEESCCCS-SCCHHHHHHHHTT
T ss_pred             CCEEEEcCcCCCCCCCCCCCH---HHhCcCCEEEEecCCC-ccCHHHHHHHHCC
Confidence            999999999764321 13443   3467888888987665 3344333343334

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.76  E-value=7.1e-05  Score=70.49  Aligned_cols=90  Identities=20%  Similarity=0.252  Sum_probs=63.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHcc-CC-CEEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhcC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKA  226 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~a  226 (346)
                      ..++++|||.|.+|+..++.+.. ++ -+|.+|||+ +.... ..             .+....+   ...++++++++|
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~l-a~-------------~l~~~~g~~~~~~~~~eav~~a  184 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEI-LE-------------RIGRRCGVPARMAAPADIAAQA  184 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHH-HH-------------HHHHHHTSCEEECCHHHHHHHC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHH-HH-------------HHHHhcCCeEEEeCHHHHHhhC
Confidence            36799999999999999998875 44 479999998 32110 00             0000001   112899999999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      |+|++++|.+   ..++..+   .+|+|+.+++++.
T Consensus       185 DIVi~aT~s~---~pvl~~~---~l~~G~~V~~vGs  214 (313)
T 3hdj_A          185 DIVVTATRST---TPLFAGQ---ALRAGAFVGAIGS  214 (313)
T ss_dssp             SEEEECCCCS---SCSSCGG---GCCTTCEEEECCC
T ss_pred             CEEEEccCCC---CcccCHH---HcCCCcEEEECCC
Confidence            9999999864   3566643   4899999999875

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.75  E-value=2.4e-05  Score=74.84  Aligned_cols=98  Identities=14%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHc-cCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLR-PFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~-~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      ..++++|||+|.+|+.+++.+. ..+ .+|.+|||+..+.......   +  ..   .... ......++++++++||+|
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~---~--~~---~~g~-~~~~~~~~~eav~~aDiV  198 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIAN---L--KE---YSGL-TIRRASSVAEAVKGVDII  198 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHH---H--TT---CTTC-EEEECSSHHHHHTTCSEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH---H--Hh---ccCc-eEEEeCCHHHHHhcCCEE
Confidence            4679999999999999988764 344 5799999976442111000   0  00   0000 001236889999999999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      ++++|.. ....++..   +.+++|..+++++.
T Consensus       199 i~aTps~-~~~pvl~~---~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          199 TTVTADK-AYATIITP---DMLEPGMHLNAVGG  227 (350)
T ss_dssp             EECCCCS-SEEEEECG---GGCCTTCEEEECSC
T ss_pred             EEeccCC-CCCceecH---HHcCCCCEEEECCC
Confidence            9999975 23345554   35789999999975

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.74  E-value=3.6e-05  Score=62.38  Aligned_cols=95  Identities=19%  Similarity=0.220  Sum_probs=56.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHH---H-hhcCCE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE---F-ASKADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---l-l~~aDi  228 (346)
                      +++++|+|+|.+|+.+|+.|...|.+|+++|++.........       ..+.  ..  ..+...+.+.   . +.++|+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-------~~~~--~~--~~~d~~~~~~l~~~~~~~~d~   72 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA-------EIDA--LV--INGDCTKIKTLEDAGIEDADM   72 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-------HCSS--EE--EESCTTSHHHHHHTTTTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-------hcCc--EE--EEcCCCCHHHHHHcCcccCCE
Confidence            468999999999999999999999999999986532110000       0000  00  0011222222   2 568999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      |++++|.....  ..-....+.++++.+++-+
T Consensus        73 vi~~~~~~~~~--~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           73 YIAVTGKEEVN--LMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             EEECCSCHHHH--HHHHHHHHHTTCCCEEEEC
T ss_pred             EEEeeCCchHH--HHHHHHHHHcCCCEEEEEe
Confidence            99998853222  1122344557777666544

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.73  E-value=1.2e-05  Score=66.37  Aligned_cols=93  Identities=10%  Similarity=0.154  Sum_probs=57.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC---HHHH-hhcCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-ASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  229 (346)
                      .++.|+|+|.+|+.+|+.|+..|++|+++|++.........  .          ......+...+   +.++ +.++|+|
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--~----------g~~~i~gd~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE--R----------GVRAVLGNAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--T----------TCEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--c----------CCCEEECCCCCHHHHHhcCcccCCEE
Confidence            47889999999999999999999999999987643211000  0          00000111222   2222 4689999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      ++++|....+..+  ...++.+.++..+|-.
T Consensus        76 i~~~~~~~~n~~~--~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           76 ILTIPNGYEAGEI--VASARAKNPDIEIIAR  104 (140)
T ss_dssp             EECCSCHHHHHHH--HHHHHHHCSSSEEEEE
T ss_pred             EEECCChHHHHHH--HHHHHHHCCCCeEEEE
Confidence            9999865544333  2344555566666644

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.68  E-value=0.00012  Score=67.93  Aligned_cols=120  Identities=15%  Similarity=0.099  Sum_probs=73.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      .++.|+++.|+|.|.+|++++..|...|+ +|++++|+..+...-...   +....   ....-......++++.++++|
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~---~~~~~---~~~~i~~~~~~~l~~~l~~~D  196 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV---INNAV---GREAVVGVDARGIEDVIAAAD  196 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHH---HHHHH---TSCCEEEECSTTHHHHHHHSS
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH---HHhhc---CCceEEEcCHHHHHHHHhcCC
Confidence            46889999999999999999999999999 799999976432110000   00000   000000012347888899999


Q ss_pred             EEEEeecCCcccc--CCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          228 VVVCCLSLNKQTA--GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       228 iV~~~lPlt~~T~--~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +|+.++|..-...  -.++.   +.++++.+++++.-.+. .+.=|.+|-+.|
T Consensus       197 iVInaTp~Gm~~~~~~pi~~---~~l~~~~~v~DlvY~P~-~T~ll~~A~~~G  245 (283)
T 3jyo_A          197 GVVNATPMGMPAHPGTAFDV---SCLTKDHWVGDVVYMPI-ETELLKAARALG  245 (283)
T ss_dssp             EEEECSSTTSTTSCSCSSCG---GGCCTTCEEEECCCSSS-SCHHHHHHHHHT
T ss_pred             EEEECCCCCCCCCCCCCCCH---HHhCCCCEEEEecCCCC-CCHHHHHHHHCc
Confidence            9999999642211  12332   34677888888765442 333333444444

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.67  E-value=7.5e-05  Score=68.93  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=70.2

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh-hc
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SK  225 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~  225 (346)
                      +.++.||++.|+|.|.+|++++..|...|+ +|++++|+..+...-..             ..........+++++- .+
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~-------------~~~~~~~~~~~~~~l~~~~  181 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRN-------------ELDHSRLRISRYEALEGQS  181 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHH-------------HHCCTTEEEECSGGGTTCC
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-------------HhccCCeeEeeHHHhcccC
Confidence            456899999999999999999999999996 99999997643211000             0000000011233332 78


Q ss_pred             CCEEEEeecCCcccc-CCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          226 ADVVVCCLSLNKQTA-GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       226 aDiV~~~lPlt~~T~-~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      +|+|+.++|...... -.+..+   .++++.+++++.-.+. .+.=|.+|-+.|
T Consensus       182 ~DivInaTp~gm~~~~~~i~~~---~l~~~~~V~DlvY~P~-~T~ll~~A~~~G  231 (272)
T 3pwz_A          182 FDIVVNATSASLTADLPPLPAD---VLGEAALAYELAYGKG-LTPFLRLAREQG  231 (272)
T ss_dssp             CSEEEECSSGGGGTCCCCCCGG---GGTTCSEEEESSCSCC-SCHHHHHHHHHS
T ss_pred             CCEEEECCCCCCCCCCCCCCHH---HhCcCCEEEEeecCCC-CCHHHHHHHHCC
Confidence            999999998643211 124433   3578888888866543 344333444444

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.63  E-value=7.6e-05  Score=70.50  Aligned_cols=92  Identities=15%  Similarity=0.132  Sum_probs=62.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHcc-CC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      ..++++|||+|.+|+.+++.+.. .+ -+|.++||+..+.......   +.      .... ... ..++++++ ++|+|
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~---~~------~~~~-~~~-~~~~~e~v-~aDvV  191 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSY---CE------DRGI-SAS-VQPAEEAS-RCDVL  191 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHH---HH------HTTC-CEE-ECCHHHHT-SSSEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHH---HH------hcCc-eEE-ECCHHHHh-CCCEE
Confidence            46799999999999999998875 34 5799999976542111000   00      0000 011 35788999 99999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      ++++|..   ..++..   +.+++|..+++++
T Consensus       192 i~aTp~~---~pv~~~---~~l~~G~~V~~ig  217 (322)
T 1omo_A          192 VTTTPSR---KPVVKA---EWVEEGTHINAIG  217 (322)
T ss_dssp             EECCCCS---SCCBCG---GGCCTTCEEEECS
T ss_pred             EEeeCCC---CceecH---HHcCCCeEEEECC
Confidence            9999854   345554   3578999999995

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.63  E-value=0.00017  Score=67.08  Aligned_cols=114  Identities=22%  Similarity=0.315  Sum_probs=82.0

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-++| |+.+|..|..-|+.|+.....                              ..++.+..++|
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~------------------------------T~dl~~~~~~A  223 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR------------------------------TQNLPELVKQA  223 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT------------------------------CSSHHHHHHTC
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC------------------------------CCCHHHHhhcC
Confidence            46899999999998876 999999999999999887532                              13788999999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |||+.++..    .++|..+.   .|+|+++||++--.           .++++.|   ||-..+       .. ----.
T Consensus       224 DIvV~A~G~----p~~i~~d~---vk~GavVIDVGin~-----------~~~~~vG---DVdf~~-------v~-~~a~~  274 (303)
T 4b4u_A          224 DIIVGAVGK----AELIQKDW---IKQGAVVVDAGFHP-----------RDGGGVG---DIQLQG-------IE-EIASA  274 (303)
T ss_dssp             SEEEECSCS----TTCBCGGG---SCTTCEEEECCCBC-----------CTTSCBC---SBCCTT-------GG-GTCSE
T ss_pred             CeEEeccCC----CCcccccc---ccCCCEEEEeceec-----------CCCCeEC---CcCHHH-------Hh-hhCcE
Confidence            999998753    35788876   58999999997432           1345533   663222       11 11235


Q ss_pred             EccCCCCCcHHHHH
Q 019081          307 ITPHVGGVTEHSYR  320 (346)
Q Consensus       307 iTPH~a~~t~~~~~  320 (346)
                      +||-=||.-+-+..
T Consensus       275 iTPVPGGVGPmTia  288 (303)
T 4b4u_A          275 YTPVPGGVGPMTIT  288 (303)
T ss_dssp             ECCSSSSHHHHHHH
T ss_pred             ECCCCCCchHHHHH
Confidence            79987776554443

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.62  E-value=5.1e-05  Score=61.65  Aligned_cols=100  Identities=14%  Similarity=0.237  Sum_probs=57.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC---HHHH-hhc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-ASK  225 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~  225 (346)
                      .+.++++.|+|+|.+|+.+++.|...|++|+++|++.........        .+  ....  .+...+   +.++ +.+
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~--------~~--~~~~--~~d~~~~~~l~~~~~~~   70 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--------YA--THAV--IANATEENELLSLGIRN   70 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT--------TC--SEEE--ECCTTCHHHHHTTTGGG
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------hC--CEEE--EeCCCCHHHHHhcCCCC
Confidence            356789999999999999999999999999999986432110000        00  0000  011222   3333 568


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      +|+|++++|...++ .+.-....+.+.+. .+|-.+.+
T Consensus        71 ~d~vi~~~~~~~~~-~~~~~~~~~~~~~~-~ii~~~~~  106 (144)
T 2hmt_A           71 FEYVIVAIGANIQA-STLTTLLLKELDIP-NIWVKAQN  106 (144)
T ss_dssp             CSEEEECCCSCHHH-HHHHHHHHHHTTCS-EEEEECCS
T ss_pred             CCEEEECCCCchHH-HHHHHHHHHHcCCC-eEEEEeCC
Confidence            99999998854121 11222334456665 45544444

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.62  E-value=4.4e-05  Score=74.48  Aligned_cols=101  Identities=26%  Similarity=0.296  Sum_probs=70.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (346)
                      .-|.||||+|||||.=|.+-|..|+.-|.+|++--|..... .... +..          .+...+ ...+..|+.+.||
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~-e~~~-S~~----------~A~~~Gf~v~~~~eA~~~AD  100 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIA-EKRA-SWR----------KATENGFKVGTYEELIPQAD  100 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHH-TTCH-HHH----------HHHHTTCEEEEHHHHGGGCS
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcc-cccc-hHH----------HHHHCCCEecCHHHHHHhCC
Confidence            45899999999999999999999999999987754411100 0000 000          011111 3457899999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      +|.+.+|...+ ..+. ++....||+|+.|. .|.|=
T Consensus       101 vV~~L~PD~~q-~~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          101 LVINLTPDKQH-SDVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             EEEECSCGGGH-HHHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             EEEEeCChhhH-HHHH-HHHHhhCCCCCEEE-ecCcc
Confidence            99999996433 3344 46888899999886 56664

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.61  E-value=4.7e-05  Score=70.70  Aligned_cols=106  Identities=18%  Similarity=0.228  Sum_probs=69.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK  225 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~  225 (346)
                      .++.|+++.|+|.|.+|++++..|...|+ +|++++|+..+..                 .++....  ...++.+ + +
T Consensus       118 ~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~-----------------~La~~~~~~~~~~l~~-l-~  178 (282)
T 3fbt_A          118 VEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTS-----------------EIYGEFKVISYDELSN-L-K  178 (282)
T ss_dssp             CCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHH-----------------HHCTTSEEEEHHHHTT-C-C
T ss_pred             CCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-----------------HHHHhcCcccHHHHHh-c-c
Confidence            46889999999999999999999999999 8999998764321                 1111110  1223344 4 8


Q ss_pred             CCEEEEeecCC--cccc-CCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHH-HHHhC
Q 019081          226 ADVVVCCLSLN--KQTA-GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH-YLECG  278 (346)
Q Consensus       226 aDiV~~~lPlt--~~T~-~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~-aL~~g  278 (346)
                      +|+|+.++|..  +.+. -.++.+.   ++++.+++++.-.+. . ..|++ |-+.|
T Consensus       179 ~DivInaTp~Gm~~~~~~~pi~~~~---l~~~~~v~DlvY~P~-~-T~ll~~A~~~G  230 (282)
T 3fbt_A          179 GDVIINCTPKGMYPKEGESPVDKEV---VAKFSSAVDLIYNPV-E-TLFLKYARESG  230 (282)
T ss_dssp             CSEEEECSSTTSTTSTTCCSSCHHH---HTTCSEEEESCCSSS-S-CHHHHHHHHTT
T ss_pred             CCEEEECCccCccCCCccCCCCHHH---cCCCCEEEEEeeCCC-C-CHHHHHHHHCc
Confidence            99999999973  2211 1355555   467888888875543 2 34444 44444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.61  E-value=4e-05  Score=60.16  Aligned_cols=75  Identities=13%  Similarity=0.198  Sum_probs=49.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      .+++++|+|.|.||+.+++.|...| ++|++++++..+......        .+ ............++.++++.+|+|+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--------~~-~~~~~~d~~~~~~~~~~~~~~d~vi   74 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--------MG-VATKQVDAKDEAGLAKALGGFDAVI   74 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--------TT-CEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--------CC-CcEEEecCCCHHHHHHHHcCCCEEE
Confidence            4679999999999999999999999 899999987543110000        00 0000000002245667788999999


Q ss_pred             EeecC
Q 019081          231 CCLSL  235 (346)
Q Consensus       231 ~~lPl  235 (346)
                      .++|.
T Consensus        75 ~~~~~   79 (118)
T 3ic5_A           75 SAAPF   79 (118)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            99874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.60  E-value=2.9e-05  Score=63.65  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=32.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .++++.|+|+|.+|+.+|+.|...|++|+++|+++.
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            457899999999999999999999999999998754

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.57  E-value=0.00013  Score=68.56  Aligned_cols=121  Identities=16%  Similarity=0.201  Sum_probs=74.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccCCcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      ++|+|||.|.||..+|..|...|.+|.+++|+...   ... ..++.+........ ........+.+++.+.+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~---~i~-~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVila   78 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYE---TVK-AKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLC   78 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHH---HHH-HHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHH---HHH-hCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEe
Confidence            58999999999999999999889999999986421   000 00000000000000 00000124566666689999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +|.. .++.++ +..-..++++.++|.+.-| +-.++.|.+.+...++.
T Consensus        79 vK~~-~~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           79 IKVV-EGADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             CCCC-TTCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             cCCC-ChHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            9964 344433 2333457788999988765 33456777777665543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.57  E-value=1.6e-05  Score=74.05  Aligned_cols=120  Identities=16%  Similarity=0.187  Sum_probs=67.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-----C-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-----G-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-----G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      .+|+|||+|.||..+|..|...     | .+|++++| ......-.. ..++.+.... ...........+..+.+..+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~-~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~D   85 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRA-AGGLRVVTPS-RDFLARPTCVTDNPAEVGTVD   85 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHH-HTSEEEECSS-CEEEECCSEEESCHHHHCCEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHh-cCCeEEEeCC-CCeEEecceEecCccccCCCC
Confidence            4799999999999999999887     8 99999998 322100000 0000000000 000000000112234578899


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH  279 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~  279 (346)
                      +|++++|... ++.++ ++....++++.++|.+.-| +-.++.|.+.+...+
T Consensus        86 ~vil~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           86 YILFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EEEECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTT
T ss_pred             EEEEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCc
Confidence            9999999643 34433 2233346778999998766 222355555554433

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.55  E-value=3.7e-05  Score=72.75  Aligned_cols=122  Identities=19%  Similarity=0.176  Sum_probs=73.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      .++|+|||+|.||..+|..|...|.+|.+++|. ... .... ..++.+.... ...........++++ ++.+|+|+++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~-~~~~-~~g~~~~~~~-~~~~~~~~~~~~~~~-~~~~D~Vila   77 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATL-QALQ-TAGLRLTEDG-ATHTLPVRATHDAAA-LGEQDVVIVA   77 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHH-HHHH-HTCEEEEETT-EEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHH-HHHH-HCCCEEecCC-CeEEEeeeEECCHHH-cCCCCEEEEe
Confidence            368999999999999999999889999999984 211 0000 0000000000 000000001246666 5889999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCC------------------CCCHHHHHHHHHhCCCe
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG------------------LLDYEAIAHYLECGHLG  281 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~------------------~vd~~aL~~aL~~g~i~  281 (346)
                      +|. ..++.++. +.-..+++++++|.+.-|=                  +-.++.+.+.+...++.
T Consensus        78 vk~-~~~~~~~~-~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~  142 (335)
T 3ghy_A           78 VKA-PALESVAA-GIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVL  142 (335)
T ss_dssp             CCH-HHHHHHHG-GGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEE
T ss_pred             CCc-hhHHHHHH-HHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEE
Confidence            995 45444432 2223467899999998882                  22345677777655654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.55  E-value=0.00026  Score=69.54  Aligned_cols=120  Identities=15%  Similarity=0.215  Sum_probs=81.8

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCC---EEEEEc----CC--CccccccccccchhhhccccccccccccC---C
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV---KIIATK----RS--WASHSQVSCQSSALAVKNGIIDDLVDEKG---C  215 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~---~V~~~d----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  215 (346)
                      +..+.++++.|+|.|..|+++++.|...|+   +|+++|    |+  ..+.... .....+  +    ..+.....   .
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~-~~L~~~--~----~~~a~~~~~~~~  253 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDL-EKLFPY--R----GWLLKKTNGENI  253 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCH-HHHSTT--C----HHHHTTSCTTCC
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccch-hHHHHH--H----HHHhhccccccc
Confidence            457889999999999999999999999998   799999    76  2221000 000000  0    00111000   2


Q ss_pred             cCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCC
Q 019081          216 HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH  279 (346)
Q Consensus       216 ~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~  279 (346)
                      ..++.+.++++|+|+.+.|..+   +++..+.++.|++++++++++...  .|.-+.+|.+.|.
T Consensus       254 ~~~L~e~l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          254 EGGPQEALKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             CSSHHHHHTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             cccHHHHhccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence            3578899999999999977532   567778889999999999996543  4555556666664

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.51  E-value=9.1e-05  Score=69.93  Aligned_cols=122  Identities=12%  Similarity=0.050  Sum_probs=78.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc---cccchhhhcccccccc--c----cccCCcCCHHHHh
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS---CQSSALAVKNGIIDDL--V----DEKGCHEDIFEFA  223 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~--~----~~~~~~~~l~ell  223 (346)
                      -++|+|||.|.||+.+|..+...|++|+.||+++.......   .......+..+.+...  .    .......++.+.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            45899999999999999999999999999998764311100   0000000000000000  0    0011236888999


Q ss_pred             hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      +.||+|+=++|-+-+.+.-+-++.=+.++++++|-..+.+  +.-.+|.+++.
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~  136 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLA  136 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCT
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhcc
Confidence            9999999999988776666666666678999987544333  45566766654

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.50  E-value=0.00011  Score=68.07  Aligned_cols=117  Identities=12%  Similarity=0.138  Sum_probs=70.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      .++.|+++.|+|.|.||+++|+.|...| +|++++|+..+.......   +.....  .... ......++.+.+.++|+
T Consensus       124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~---~~~~~~--~~~~-~~~d~~~~~~~~~~~Di  196 (287)
T 1nvt_A          124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKE---IAEKLN--KKFG-EEVKFSGLDVDLDGVDI  196 (287)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHH---HHHHHT--CCHH-HHEEEECTTCCCTTCCE
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHH---Hhhhcc--cccc-eeEEEeeHHHhhCCCCE
Confidence            3578999999999999999999999999 999999875331110000   000000  0000 00001122455678999


Q ss_pred             EEEeecCCccc--cC-CC-CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          229 VVCCLSLNKQT--AG-IV-NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       229 V~~~lPlt~~T--~~-li-~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      |+.+.|.....  .. .+ +   .+.++++++++|++-... .+ .|++..++
T Consensus       197 lVn~ag~~~~~~~~~~~~~~---~~~l~~~~~v~Dv~y~p~-~t-~ll~~a~~  244 (287)
T 1nvt_A          197 IINATPIGMYPNIDVEPIVK---AEKLREDMVVMDLIYNPL-ET-VLLKEAKK  244 (287)
T ss_dssp             EEECSCTTCTTCCSSCCSSC---STTCCSSSEEEECCCSSS-SC-HHHHHHHT
T ss_pred             EEECCCCCCCCCCCCCCCCC---HHHcCCCCEEEEeeeCCc-cC-HHHHHHHH
Confidence            99999865421  11 12 2   345789999999987543 23 35554443

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.50  E-value=0.0001  Score=69.43  Aligned_cols=110  Identities=11%  Similarity=0.113  Sum_probs=66.4

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcC---CHHHHh
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE---DIFEFA  223 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~ell  223 (346)
                      +.++.||++.|+|.|.+|++++..|...|+ +|++++|+.............+.-..+   ... ......   ++.+.+
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~---~~~-~~~~~~~~~~l~~~l  224 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTD---CKA-QLFDIEDHEQLRKEI  224 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSS---CEE-EEEETTCHHHHHHHH
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcC---Cce-EEeccchHHHHHhhh
Confidence            356899999999999999999999999999 899999973211000000000000000   000 000122   356678


Q ss_pred             hcCCEEEEeecCCcc--cc-CCC-CHHHHccCCCCcEEEEcCCCC
Q 019081          224 SKADVVVCCLSLNKQ--TA-GIV-NKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~--T~-~li-~~~~l~~mk~gailIN~sRg~  264 (346)
                      .++|+|+.++|..-.  +. ..+ +.   ..++++.+++++.-.+
T Consensus       225 ~~aDiIINaTp~Gm~~~~~~~p~~~~---~~l~~~~~V~DlvY~P  266 (315)
T 3tnl_A          225 AESVIFTNATGVGMKPFEGETLLPSA---DMLRPELIVSDVVYKP  266 (315)
T ss_dssp             HTCSEEEECSSTTSTTSTTCCSCCCG---GGCCTTCEEEESCCSS
T ss_pred             cCCCEEEECccCCCCCCCCCCCCCcH---HHcCCCCEEEEeccCC
Confidence            899999999996422  11 122 22   3467888888886554

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.43  E-value=0.00011  Score=71.18  Aligned_cols=104  Identities=18%  Similarity=0.187  Sum_probs=60.7

Q ss_pred             CeEEEEecCHHHHHHHHHHcc-CCCEEEEEc---CCCccccccccccchhhhc----cccccccccccC-CcCCHHHHhh
Q 019081          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATK---RSWASHSQVSCQSSALAVK----NGIIDDLVDEKG-CHEDIFEFAS  224 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~-~G~~V~~~d---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~l~ell~  224 (346)
                      .+|+|||.|.||..+|..|.. -|.+|.+++   ++........ ...++.+.    .+.......... ...++++.++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   81 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKAL-GADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS   81 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHH-TTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHH-hhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence            479999999999999999977 499999999   4322110000 00000000    000000000011 1247888899


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      .||+|++++|.. .++.++ ++.-..++++.++|..
T Consensus        82 ~aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           82 GADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             TCSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999954 333333 2233446789999985

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.41  E-value=9e-05  Score=69.67  Aligned_cols=118  Identities=19%  Similarity=0.266  Sum_probs=67.4

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      -..++|+|||.|.||..+|..|...|.+|..+ ++......-..  .++...... ...........++++ ++.+|+|+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~--~g~~~~~~~-~~~~~~~~~~~~~~~-~~~~D~vi   91 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEA--TGLRLETQS-FDEQVKVSASSDPSA-VQGADLVL   91 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH--HCEEEECSS-CEEEECCEEESCGGG-GTTCSEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh--CCeEEEcCC-CcEEEeeeeeCCHHH-cCCCCEEE
Confidence            34568999999999999999999899999999 65422100000  000000000 000000001234544 58899999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      +++|.. .++.++ ++.-..++++.++|.+.-|= -.++.|.+.+.
T Consensus        92 lavk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~~  134 (318)
T 3hwr_A           92 FCVKST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLLE  134 (318)
T ss_dssp             ECCCGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHCC
T ss_pred             EEcccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHcC
Confidence            999964 554443 22334567899999986662 22345555554

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.40  E-value=0.00026  Score=58.69  Aligned_cols=103  Identities=12%  Similarity=0.199  Sum_probs=69.4

Q ss_pred             CCeEEEEec----CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          153 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       153 g~tvgIiG~----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      -++|+|||.    |++|..+++.++..|++|+.+++.....                  +. .....+.+++|+-...|+
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~------------------~i-~G~~~~~sl~el~~~vDl   73 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE------------------EL-FGEEAVASLLDLKEPVDI   73 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS------------------EE-TTEECBSSGGGCCSCCSE
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccC------------------cC-CCEEecCCHHHCCCCCCE
Confidence            468999999    8999999999999999977766541010                  00 000134578887778999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +++++|. +.+..+++ +..+ ...++++++.+-    .++++.+..++..+.
T Consensus        74 avi~vp~-~~~~~v~~-~~~~-~gi~~i~~~~g~----~~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           74 LDVFRPP-SALMDHLP-EVLA-LRPGLVWLQSGI----RHPEFEKALKEAGIP  119 (140)
T ss_dssp             EEECSCH-HHHTTTHH-HHHH-HCCSCEEECTTC----CCHHHHHHHHHTTCC
T ss_pred             EEEEeCH-HHHHHHHH-HHHH-cCCCEEEEcCCc----CHHHHHHHHHHcCCE
Confidence            9999996 66677764 3333 233456555432    257888888876554

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.38  E-value=0.00025  Score=68.29  Aligned_cols=40  Identities=30%  Similarity=0.348  Sum_probs=35.9

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..-+.||||+|+|.|.+|+.+++.++.+|++|+++|++..
T Consensus         9 ~~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A            9 RIILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            3457899999999999999999999999999999997653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.28  E-value=5.1e-05  Score=69.04  Aligned_cols=122  Identities=20%  Similarity=0.226  Sum_probs=69.6

Q ss_pred             HHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcccccccccc------ch---------
Q 019081          135 RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQS------SA---------  198 (346)
Q Consensus       135 ~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~------~~---------  198 (346)
                      .++++-..|+......|.+++|.|+|+|.+|..+|+.|...|. ++..+|+..-....-.++.      .+         
T Consensus        13 ~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~   92 (249)
T 1jw9_B           13 NRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARD   92 (249)
T ss_dssp             HHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHH
T ss_pred             hheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHH
Confidence            3333333454333356899999999999999999999999998 8999998652110000000      00         


Q ss_pred             -hhhccccc-cccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          199 -LAVKNGII-DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       199 -~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                       +...+... ...........+++++++++|+|+.+++ +.+++.+++....+.   +..+|+.
T Consensus        93 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B           93 ALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             HHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             HHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence             00000000 0000000011245678899999999986 567777777665443   3445654

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.25  E-value=0.00036  Score=58.05  Aligned_cols=101  Identities=13%  Similarity=0.084  Sum_probs=68.6

Q ss_pred             CCeEEEEec----CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          153 GKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       153 g~tvgIiG~----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      -++|+|||.    |.+|..+++.++..|++|+..++.....                  ....   .+.+++++....|+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i------------------~G~~---~y~sl~~l~~~vDl   80 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV------------------LGRK---CYPSVLDIPDKIEV   80 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------------------TTEE---CBSSGGGCSSCCSE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeE------------------CCee---ccCCHHHcCCCCCE
Confidence            468999999    7999999999999999977776542110                  0011   34578888778999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +++++|. +....++. +..+ ...++++++.  |.  .++++.++.++..+.
T Consensus        81 vvi~vp~-~~~~~vv~-~~~~-~gi~~i~~~~--g~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A           81 VDLFVKP-KLTMEYVE-QAIK-KGAKVVWFQY--NT--YNREASKKADEAGLI  126 (144)
T ss_dssp             EEECSCH-HHHHHHHH-HHHH-HTCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             EEEEeCH-HHHHHHHH-HHHH-cCCCEEEECC--Cc--hHHHHHHHHHHcCCE
Confidence            9999996 55555553 2332 2334555543  22  378888888877654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.21  E-value=0.00062  Score=63.60  Aligned_cols=120  Identities=17%  Similarity=0.138  Sum_probs=72.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc--ccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++++|||.|.||..+|..|...|.+|..++|+...  . .. ..++.+...  .....  ......+.++ ++.+|+|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~--~-i~-~~g~~~~~~--~g~~~~~~~~~~~~~~~-~~~~D~vil   75 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYE--A-IA-GNGLKVFSI--NGDFTLPHVKGYRAPEE-IGPMDLVLV   75 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHH--H-HH-HTCEEEEET--TCCEEESCCCEESCHHH-HCCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHH--H-HH-hCCCEEEcC--CCeEEEeeceeecCHHH-cCCCCEEEE
Confidence            47999999999999999999889999999986411  0 00 000000000  00000  0001235544 678999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                      ++|.. .++.++ +..-..++++.++|.+.-| +-.++.|.+.+...++.++
T Consensus        76 avk~~-~~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           76 GLKTF-ANSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             CCCGG-GGGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred             ecCCC-CcHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence            99954 344333 2233457889999998766 2235667777766565443

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.18  E-value=0.00028  Score=67.06  Aligned_cols=67  Identities=12%  Similarity=0.175  Sum_probs=49.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHh--hcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA--SKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell--~~aD  227 (346)
                      .+|||||+|.||+..++.++.. |++++ ++|++..+..                 ......+  ...++++++  .+.|
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~-----------------~~~~~~g~~~~~~~~~~l~~~~~D   68 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKRE-----------------KFGKRYNCAGDATMEALLAREDVE   68 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHH-----------------HHHHHHTCCCCSSHHHHHHCSSCC
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHH-----------------HHHHHcCCCCcCCHHHHhcCCCCC
Confidence            4899999999999999999877 88866 6787654311                 1111111  357899999  5699


Q ss_pred             EEEEeecCCc
Q 019081          228 VVVCCLSLNK  237 (346)
Q Consensus       228 iV~~~lPlt~  237 (346)
                      +|++++|...
T Consensus        69 ~V~i~tp~~~   78 (354)
T 3db2_A           69 MVIITVPNDK   78 (354)
T ss_dssp             EEEECSCTTS
T ss_pred             EEEEeCChHH
Confidence            9999999643

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.18  E-value=0.0011  Score=62.31  Aligned_cols=110  Identities=15%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCH---HHHh
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI---FEFA  223 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ell  223 (346)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|.+++|+..........-..+....+   ... ......++   .+.+
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~---~~v-~~~~~~~l~~~~~~l  218 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTD---CVV-TVTDLADQHAFTEAL  218 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSS---CEE-EEEETTCHHHHHHHH
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccC---cce-EEechHhhhhhHhhc
Confidence            356889999999999999999999999999 899999973211000000000000000   000 00012344   5678


Q ss_pred             hcCCEEEEeecCCcc--ccCCC--CHHHHccCCCCcEEEEcCCCC
Q 019081          224 SKADVVVCCLSLNKQ--TAGIV--NKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~--T~~li--~~~~l~~mk~gailIN~sRg~  264 (346)
                      .++|+|+.++|..-.  ....+  +.   +.++++.+++++.-.+
T Consensus       219 ~~~DiIINaTp~Gm~~~~~~~~~~~~---~~l~~~~~v~D~vY~P  260 (312)
T 3t4e_A          219 ASADILTNGTKVGMKPLENESLIGDV---SLLRPELLVTECVYNP  260 (312)
T ss_dssp             HHCSEEEECSSTTSTTSTTCCSCCCG---GGSCTTCEEEECCCSS
T ss_pred             cCceEEEECCcCCCCCCCCCcccCCH---HHcCCCCEEEEeccCC
Confidence            899999999997531  11111  32   2356777777775544

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.16  E-value=0.0003  Score=65.40  Aligned_cols=104  Identities=13%  Similarity=0.112  Sum_probs=63.2

Q ss_pred             CeEEEEecCHHHHH-HHHHHcc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081          154 KTVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  228 (346)
                      .++||||+|.||+. .++.++. -|++++ ++|++..+..                 .....++  .+.+++++++++|+
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~~~~~~~~~~~ll~~~D~   69 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKRE-----------------KICSDYRIMPFDSIESLAKKCDC   69 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHH-----------------HHHHHHTCCBCSCHHHHHTTCSE
T ss_pred             CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHH-----------------HHHHHcCCCCcCCHHHHHhcCCE
Confidence            58999999999996 8887776 578877 6887654311                 1111111  25789999999999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCc-EEEEc-CCCCCCCHHHHHHHHHhCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNI-ARGGLLDYEAIAHYLECGH  279 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~ga-ilIN~-sRg~~vd~~aL~~aL~~g~  279 (346)
                      |++++|......     -....++.|. +++.- .--.+-+.++|.++.++..
T Consensus        70 V~i~tp~~~h~~-----~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g  117 (308)
T 3uuw_A           70 IFLHSSTETHYE-----IIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKN  117 (308)
T ss_dssp             EEECCCGGGHHH-----HHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHT
T ss_pred             EEEeCCcHhHHH-----HHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence            999998542211     1122344443 44431 1222234556777666543

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.15  E-value=0.00024  Score=67.13  Aligned_cols=66  Identities=15%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh--cCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aD  227 (346)
                      .+|||||+|.||+..++.++.. +++++ ++|++..+..                 ......+  ...+++++++  ++|
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~l~~~~~D   67 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQ-----------------RLAEANGAEAVASPDEVFARDDID   67 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHH-----------------HHHHTTTCEEESSHHHHTTCSCCC
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHH-----------------HHHHHcCCceeCCHHHHhcCCCCC
Confidence            4799999999999999988765 78876 5787653311                 1111111  3478999998  899


Q ss_pred             EEEEeecCC
Q 019081          228 VVVCCLSLN  236 (346)
Q Consensus       228 iV~~~lPlt  236 (346)
                      +|++++|..
T Consensus        68 ~V~i~tp~~   76 (344)
T 3euw_A           68 GIVIGSPTS   76 (344)
T ss_dssp             EEEECSCGG
T ss_pred             EEEEeCCch
Confidence            999999854

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.15  E-value=0.00017  Score=67.83  Aligned_cols=125  Identities=11%  Similarity=0.037  Sum_probs=71.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .++|+|||.|.||..+|..+...|+ +|..+|++.........   .+...... ...........++ +.+++||+|++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~---~l~~~~~~-~~~~~~i~~t~d~-~a~~~aDiVi~   78 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKAL---DITHSMVM-FGSTSKVIGTDDY-ADISGSDVVII   78 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHH---HHHHHHHH-HTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHH---HHHhhhhh-cCCCcEEEECCCH-HHhCCCCEEEE
Confidence            3689999999999999999988888 99999987543211000   00000000 0000000012456 67899999999


Q ss_pred             eecCCccccCCC-----------CHH---HHccCCCCcEEEEcCCCCCCCHHHHHHHHH--hCCCeEE
Q 019081          232 CLSLNKQTAGIV-----------NKS---FLSSMKKGSLLVNIARGGLLDYEAIAHYLE--CGHLGGL  283 (346)
Q Consensus       232 ~lPlt~~T~~li-----------~~~---~l~~mk~gailIN~sRg~~vd~~aL~~aL~--~g~i~ga  283 (346)
                      +++. +...++-           -++   .+....|++++|+++-+.-+....+.++..  ..++.|.
T Consensus        79 avg~-p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~  145 (317)
T 2ewd_A           79 TASI-PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGM  145 (317)
T ss_dssp             CCCC-SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred             eCCC-CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhhCCCHHHEEec
Confidence            9952 2222221           011   222335699999998765555555555542  2355544

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.12  E-value=0.00027  Score=66.49  Aligned_cols=66  Identities=21%  Similarity=0.246  Sum_probs=48.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhh--cCCE
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS--KADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~--~aDi  228 (346)
                      .+|||||+|.||+..++.+... +++++ ++|++..+..                 ......+ ...+++++++  ++|+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~~D~   66 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAE-----------------AIAGAYGCEVRTIDAIEAAADIDA   66 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHH-----------------HHHHHTTCEECCHHHHHHCTTCCE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-----------------HHHHHhCCCcCCHHHHhcCCCCCE
Confidence            4899999999999999988865 88877 5787654311                 1111111 1468999998  8999


Q ss_pred             EEEeecCC
Q 019081          229 VVCCLSLN  236 (346)
Q Consensus       229 V~~~lPlt  236 (346)
                      |++++|..
T Consensus        67 V~i~tp~~   74 (331)
T 4hkt_A           67 VVICTPTD   74 (331)
T ss_dssp             EEECSCGG
T ss_pred             EEEeCCch
Confidence            99999854

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.11  E-value=0.00028  Score=66.09  Aligned_cols=101  Identities=16%  Similarity=0.246  Sum_probs=59.4

Q ss_pred             eEEEEecCHHHHHHHHHHcc--CCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081          155 TVFILGFGNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~  231 (346)
                      +|+|||.|.+|..+|..+..  +|.+|..+|++.........   .+  .+........ ......++++ ++.||+|++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~---~l--~~~~~~~~~~~~i~~t~d~~~-l~~aDvVii   75 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKAL---DM--YESGPVGLFDTKVTGSNDYAD-TANSDIVII   75 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHH---HH--HTTHHHHTCCCEEEEESCGGG-GTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHH---hH--HhhhhcccCCcEEEECCCHHH-HCCCCEEEE
Confidence            79999999999999999875  68999999997543211000   00  0000000000 0001246666 899999999


Q ss_pred             eecCCccccCCC-------C----HH---HHccCCCCcEEEEcCC
Q 019081          232 CLSLNKQTAGIV-------N----KS---FLSSMKKGSLLVNIAR  262 (346)
Q Consensus       232 ~lPlt~~T~~li-------~----~~---~l~~mk~gailIN~sR  262 (346)
                      ++| ++...+..       |    ++   .+....+++++|+++-
T Consensus        76 av~-~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN  119 (310)
T 1guz_A           76 TAG-LPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (310)
T ss_dssp             CCS-CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             eCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            998 44444431       1    11   2222357889999843

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.10  E-value=0.00041  Score=57.64  Aligned_cols=101  Identities=7%  Similarity=-0.007  Sum_probs=58.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC---cCCHHHH-hhcCCE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC---HEDIFEF-ASKADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~el-l~~aDi  228 (346)
                      .+++.|+|+|.+|+.+++.|...|++|+++|++..........  .  .+.    ...-..+.   ...+.++ +.++|.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~--~--~~~----~~~~i~gd~~~~~~l~~a~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQ--R--LGD----NADVIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHH--H--HCT----TCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHH--h--hcC----CCeEEEcCCCCHHHHHHcChhhCCE
Confidence            5689999999999999999999999999999863210000000  0  000    00000111   2234554 788999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      |+++++..+.  .+.-....+.+.+...+|...+.
T Consensus        75 vi~~~~~d~~--n~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           75 ILALSDNDAD--NAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             EEECSSCHHH--HHHHHHHHHHHTSSSCEEEECSS
T ss_pred             EEEecCChHH--HHHHHHHHHHHCCCCEEEEEECC
Confidence            9999875432  23323444555444455544333

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.08  E-value=0.00035  Score=65.76  Aligned_cols=122  Identities=13%  Similarity=0.066  Sum_probs=67.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|||.|.||..+|..+...|.  +|..+|++.......... ....     ............+ .+.+++||+|++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~-l~~~-----~~~~~~~~i~~~d-~~~~~~aDvVii   73 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALD-LIHG-----TPFTRRANIYAGD-YADLKGSDVVIV   73 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HHHH-----GGGSCCCEEEECC-GGGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHH-HHhh-----hhhcCCcEEEeCC-HHHhCCCCEEEE
Confidence            379999999999999999988888  999999875321110000 0000     0000000001124 356789999999


Q ss_pred             eecCCccccCCC-----------CHHH---HccCCCCcEEEEcCCCCCCCHHHHHHHH--HhCCCeEE
Q 019081          232 CLSLNKQTAGIV-----------NKSF---LSSMKKGSLLVNIARGGLLDYEAIAHYL--ECGHLGGL  283 (346)
Q Consensus       232 ~lPlt~~T~~li-----------~~~~---l~~mk~gailIN~sRg~~vd~~aL~~aL--~~g~i~ga  283 (346)
                      ++|... ..++-           -++.   +....|++++|+++-+.=+.+..+.+..  ...++.|.
T Consensus        74 av~~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           74 AAGVPQ-KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CCCCCC-CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             ccCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            999533 22221           1222   2222578899988654333222222322  34466554

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.06  E-value=0.00062  Score=63.59  Aligned_cols=106  Identities=15%  Similarity=0.139  Sum_probs=64.2

Q ss_pred             CeEEEEecCHHHHH-HHHHHcc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCE
Q 019081          154 KTVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi  228 (346)
                      .+|||||+|.||+. +++.++. -|++++ ++|++..+...                 .....+  ...+++++..++|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~-----------------~~~~~g~~~~~~~~~l~~~~D~   68 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALP-----------------ICESWRIPYADSLSSLAASCDA   68 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHH-----------------HHHHHTCCBCSSHHHHHTTCSE
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHH-----------------HHHHcCCCccCcHHHhhcCCCE
Confidence            48999999999997 8887764 478876 78876543211                 111111  23567777678999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCc-EEEEc-CCCCCCCHHHHHHHHHhCCCe
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNI-ARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~ga-ilIN~-sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      |++++|.....     +-....++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        69 V~i~tp~~~h~-----~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           69 VFVHSSTASHF-----DVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             EEECSCTTHHH-----HHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             EEEeCCchhHH-----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            99999853221     12223355665 55542 122233455688877766543

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.04  E-value=0.00041  Score=64.85  Aligned_cols=77  Identities=21%  Similarity=0.178  Sum_probs=47.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|||.|.||..+|..|...|  .+|..+|++.......... ....  .........  ....++ +.+++||+|++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~-l~~~--~~~~~~~~~--~~~~d~-~~~~~aDvVii   75 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQID-FQDA--MANLEAHGN--IVINDW-AALADADVVIS   75 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HHHH--GGGSSSCCE--EEESCG-GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHH-HHhh--hhhcCCCeE--EEeCCH-HHhCCCCEEEE
Confidence            48999999999999999998777  6999999875321110000 0000  000000000  012456 67889999999


Q ss_pred             eecCC
Q 019081          232 CLSLN  236 (346)
Q Consensus       232 ~lPlt  236 (346)
                      ++|..
T Consensus        76 av~~~   80 (309)
T 1hyh_A           76 TLGNI   80 (309)
T ss_dssp             CCSCG
T ss_pred             ecCCc
Confidence            99853

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.03  E-value=0.00026  Score=67.24  Aligned_cols=67  Identities=18%  Similarity=0.242  Sum_probs=48.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHccC--CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh--c
Q 019081          153 GKTVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--K  225 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~  225 (346)
                      -.++||||+|.||+..++.++..  +++++ ++|++..+..                 ......+  ...+++++++  +
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~-----------------~~~~~~~~~~~~~~~~ll~~~~   75 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALK-----------------AAVERTGARGHASLTDMLAQTD   75 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHH-----------------HHHHHHCCEEESCHHHHHHHCC
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHH-----------------HHHHHcCCceeCCHHHHhcCCC
Confidence            35899999999999999988876  78866 6787654311                 1111111  3478999997  7


Q ss_pred             CCEEEEeecCC
Q 019081          226 ADVVVCCLSLN  236 (346)
Q Consensus       226 aDiV~~~lPlt  236 (346)
                      +|+|++++|..
T Consensus        76 ~D~V~i~tp~~   86 (354)
T 3q2i_A           76 ADIVILTTPSG   86 (354)
T ss_dssp             CSEEEECSCGG
T ss_pred             CCEEEECCCcH
Confidence            99999999854

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.03  E-value=0.00038  Score=65.79  Aligned_cols=66  Identities=21%  Similarity=0.346  Sum_probs=47.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--cC
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA  226 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a  226 (346)
                      .+|||||+|.||+..++.++.. +++++ ++|++..+..                 .....++   .+.+++++++  ++
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~ll~~~~~   65 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLR-----------------EMKEKLGVEKAYKDPHELIEDPNV   65 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHH-----------------HHHHHHTCSEEESSHHHHHHCTTC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHH-----------------HHHHHhCCCceeCCHHHHhcCCCC
Confidence            3799999999999999998764 78876 5787654311                 1111111   2478999998  89


Q ss_pred             CEEEEeecCC
Q 019081          227 DVVVCCLSLN  236 (346)
Q Consensus       227 DiV~~~lPlt  236 (346)
                      |+|++++|..
T Consensus        66 D~V~i~tp~~   75 (344)
T 3ezy_A           66 DAVLVCSSTN   75 (344)
T ss_dssp             CEEEECSCGG
T ss_pred             CEEEEcCCCc
Confidence            9999999854

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=97.02  E-value=0.0082  Score=56.02  Aligned_cols=93  Identities=20%  Similarity=0.152  Sum_probs=66.5

Q ss_pred             ccCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       150 ~l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      .+.|.+|++||=|   ++.++.+..+..||++|.+..|..-..                  +. ...+...++++.++++
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~------------------~~-~~~g~~~d~~eav~~a  204 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD------------------EE-NTFGTYVSMDEAVESS  204 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSC------------------TT-CSSCEECCHHHHHHHC
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCc------------------ch-hhcCccCCHHHHhCCC
Confidence            4789999999975   799999999999999999887532110                  00 1112346899999999


Q ss_pred             CEEEEeecCCcc-----------ccCCCCHHHHccCCCCcEEEEcC
Q 019081          227 DVVVCCLSLNKQ-----------TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       227 DiV~~~lPlt~~-----------T~~li~~~~l~~mk~gailIN~s  261 (346)
                      |+|..-.--.+.           ...-++.+.++++|++++|.-+.
T Consensus       205 Dvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          205 DVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             SEEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             CEEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence            999874311111           12457888899999999887763

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.99  E-value=0.00074  Score=63.45  Aligned_cols=66  Identities=8%  Similarity=0.132  Sum_probs=47.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--cC
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA  226 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a  226 (346)
                      .++||||+|.||+..++.++.. +++++ ++|++..+..                 .....++   .+.+++++++  +.
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~ll~~~~~   68 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQ-----------------AFANKYHLPKAYDKLEDMLADESI   68 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTC-----------------C---CCCCSCEESCHHHHHTCTTC
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCCCC
Confidence            4899999999999999888754 56765 5687655421                 1122222   2478999998  79


Q ss_pred             CEEEEeecCC
Q 019081          227 DVVVCCLSLN  236 (346)
Q Consensus       227 DiV~~~lPlt  236 (346)
                      |+|++++|..
T Consensus        69 D~V~i~tp~~   78 (329)
T 3evn_A           69 DVIYVATINQ   78 (329)
T ss_dssp             CEEEECSCGG
T ss_pred             CEEEECCCcH
Confidence            9999999854

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.99  E-value=0.00091  Score=61.57  Aligned_cols=102  Identities=16%  Similarity=0.250  Sum_probs=64.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC-Cc-CCHHHHhhcCCE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CH-EDIFEFASKADV  228 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~ell~~aDi  228 (346)
                      .++++.|+|.|.+|++++..|...|+ +|.+++|+..+..                 .+....+ .. .++.  +.++|+
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~-----------------~la~~~~~~~~~~~~--~~~~Di  178 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQ-----------------YLAALYGYAYINSLE--NQQADI  178 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHH-----------------HHHHHHTCEEESCCT--TCCCSE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-----------------HHHHHcCCccchhhh--cccCCE
Confidence            46899999999999999999999998 7999999754311                 1111110 01 1122  468999


Q ss_pred             EEEeecCCccc----cC-CCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh
Q 019081          229 VVCCLSLNKQT----AG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC  277 (346)
Q Consensus       229 V~~~lPlt~~T----~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~  277 (346)
                      |+.++|.....    .. .+..+.   ++++.+++++.-.+. .+ .|++.-++
T Consensus       179 vInaTp~gm~~~~~~~~~~~~~~~---l~~~~~v~DlvY~P~-~T-~ll~~A~~  227 (271)
T 1npy_A          179 LVNVTSIGMKGGKEEMDLAFPKAF---IDNASVAFDVVAMPV-ET-PFIRYAQA  227 (271)
T ss_dssp             EEECSSTTCTTSTTTTSCSSCHHH---HHHCSEEEECCCSSS-SC-HHHHHHHH
T ss_pred             EEECCCCCccCccccCCCCCCHHH---cCCCCEEEEeecCCC-CC-HHHHHHHH
Confidence            99999975421    11 134333   356778888876443 33 45444444

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.98  E-value=0.00096  Score=64.03  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=34.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++|+...
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            46799999999999999999999999999999998654

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.98  E-value=0.00063  Score=64.86  Aligned_cols=65  Identities=15%  Similarity=0.182  Sum_probs=47.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh--cCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aD  227 (346)
                      .++||||+|.||+..++.++.. ++++. ++|++..+..                  .+...+  .+.+++++++  +.|
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~------------------~a~~~g~~~~~~~~~ll~~~~~D   67 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKRE------------------AAAQKGLKIYESYEAVLADEKVD   67 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHH------------------HHHTTTCCBCSCHHHHHHCTTCC
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH------------------HHHhcCCceeCCHHHHhcCCCCC
Confidence            4899999999999999988876 78876 4677543310                  011111  3478999997  789


Q ss_pred             EEEEeecCC
Q 019081          228 VVVCCLSLN  236 (346)
Q Consensus       228 iV~~~lPlt  236 (346)
                      +|++++|..
T Consensus        68 ~V~i~tp~~   76 (359)
T 3e18_A           68 AVLIATPND   76 (359)
T ss_dssp             EEEECSCGG
T ss_pred             EEEEcCCcH
Confidence            999999854

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.95  E-value=0.00041  Score=65.28  Aligned_cols=66  Identities=12%  Similarity=0.067  Sum_probs=48.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--cC
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA  226 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a  226 (346)
                      .++||||+|.||+..++.++.. +++|+ ++|++..+..                 .....++   .+.+++++++  ++
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~~~~ll~~~~~   68 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQ-----------------KMAKELAIPVAYGSYEELCKDETI   68 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHH-----------------HHHHHTTCCCCBSSHHHHHHCTTC
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHH-----------------HHHHHcCCCceeCCHHHHhcCCCC
Confidence            5899999999999999998864 77877 5677654311                 1111111   3578999997  79


Q ss_pred             CEEEEeecCC
Q 019081          227 DVVVCCLSLN  236 (346)
Q Consensus       227 DiV~~~lPlt  236 (346)
                      |+|++++|..
T Consensus        69 D~V~i~tp~~   78 (330)
T 3e9m_A           69 DIIYIPTYNQ   78 (330)
T ss_dssp             SEEEECCCGG
T ss_pred             CEEEEcCCCH
Confidence            9999999854

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.90  E-value=0.00019  Score=66.48  Aligned_cols=98  Identities=14%  Similarity=0.122  Sum_probs=61.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh-hcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~~~  232 (346)
                      ++++|||.|.||..+|..|...|.+|.+++|+........        .++    .... ....+..+.+ ..+|+|+++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~--------~~g----~~~~-~~~~~~~~~~~~~~D~vila   69 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYT--------VPH----APAQ-DIVVKGYEDVTNTFDVIIIA   69 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEES--------STT----SCCE-EEEEEEGGGCCSCEEEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEe--------cCC----eecc-ceecCchHhcCCCCCEEEEe
Confidence            4799999999999999999988999999998743211000        000    0000 0001223433 789999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCC
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL  266 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~v  266 (346)
                      +|.. .++.++. +.-..++++.++|.+.-|=-.
T Consensus        70 vk~~-~~~~~l~-~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           70 VKTH-QLDAVIP-HLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             SCGG-GHHHHGG-GHHHHEEEEEEEEECCSSCCC
T ss_pred             CCcc-CHHHHHH-HHHHhhCCCCEEEEeccCccc
Confidence            9854 4444432 222235678889988776433

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.89  E-value=0.00029  Score=65.82  Aligned_cols=115  Identities=15%  Similarity=0.171  Sum_probs=62.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      .+++|||.|.||..+|..|. -|.+|.+++|+......-.  ..++.+...   .. ........-.+....+|+|++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~--~~G~~~~~~---~~-~~~~~~~~~~~~~~~~D~vilav   75 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQ--SEGIRLYKG---GE-EFRADCSADTSINSDFDLLVVTV   75 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHH--HHCEEEEET---TE-EEEECCEEESSCCSCCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHH--hCCceEecC---CC-eecccccccccccCCCCEEEEEe
Confidence            58999999999999999999 8999999998653210000  000000000   00 00000000023457899999999


Q ss_pred             cCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081          234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  280 (346)
Q Consensus       234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  280 (346)
                      |.. .++.++  +.++.++++. +|.+.-|= -.++.|.+.+-..++
T Consensus        76 K~~-~~~~~l--~~l~~~~~~~-ivs~~nGi-~~~e~l~~~~~~~~v  117 (307)
T 3ego_A           76 KQH-QLQSVF--SSLERIGKTN-ILFLQNGM-GHIHDLKDWHVGHSI  117 (307)
T ss_dssp             CGG-GHHHHH--HHTTSSCCCE-EEECCSSS-HHHHHHHTCCCSCEE
T ss_pred             CHH-HHHHHH--HHhhcCCCCe-EEEecCCc-cHHHHHHHhCCCCcE
Confidence            853 333332  3344445566 77776552 222334333344444

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.88  E-value=0.0054  Score=60.16  Aligned_cols=129  Identities=17%  Similarity=0.143  Sum_probs=74.6

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccc----cccchh-hhc---cccccccccccC-CcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVS----CQSSAL-AVK---NGIIDDLVDEKG-CHED  218 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~----~~~~~~-~~~---~~~~~~~~~~~~-~~~~  218 (346)
                      +.++.|+||.|=|+|++|..+|+.|...|++|++.+.+......+.    .....+ ..+   .+.+.+.....+ ...+
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            4579999999999999999999999999999987653221100000    000000 000   000000000001 0011


Q ss_pred             HHHHh-hcCCEEEEeecCCccccCCCCHHHHccCCCC--cEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          219 IFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKG--SLLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       219 l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~g--ailIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                      -++++ ..|||++-|.     +.+.|+.+...+++.+  .++++-+-+.+-.+ + .+.|++..|..+
T Consensus       310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl~~  370 (450)
T 4fcc_A          310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVLFA  370 (450)
T ss_dssp             TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCEEE
T ss_pred             CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCEEE
Confidence            11222 4699988764     5578999988888754  57888888876443 3 366777777644

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.84  E-value=0.0012  Score=62.46  Aligned_cols=107  Identities=9%  Similarity=0.038  Sum_probs=62.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ..+|+|||.|.+|..+|..+...|+ +|..+|++.......... ....  .... ..........++++.+++||+|++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~-l~~~--~~~~-~~~~~i~~t~d~~ea~~~aDiVi~   84 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALD-LSHV--TSVV-DTNVSVRAEYSYEAALTGADCVIV   84 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHH-HHHH--HHHT-TCCCCEEEECSHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHH-HHhh--hhcc-CCCCEEEEeCCHHHHhCCCCEEEE
Confidence            3589999999999999999988787 999999875432110000 0000  0000 000000012678888999999999


Q ss_pred             ee--cCCccc------cCC-C------CH---HHHccCCCCcEEEEcCCC
Q 019081          232 CL--SLNKQT------AGI-V------NK---SFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       232 ~l--Plt~~T------~~l-i------~~---~~l~~mk~gailIN~sRg  263 (346)
                      ++  |..+.-      +-- +      -+   +.+....|++++|+++-.
T Consensus        85 a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP  134 (331)
T 1pzg_A           85 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  134 (331)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             ccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCc
Confidence            98  544321      110 0      01   123333589999998543

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.82  E-value=0.014  Score=54.44  Aligned_cols=105  Identities=15%  Similarity=0.010  Sum_probs=72.7

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      .+.|.+|+++|= +++.++.+..+..||++|....|..-..+...             .+.. ......++++.++++|+
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~-------------~~~~-~~~~~~d~~eav~~aDv  216 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGL-------------LKRA-NAFFTHDPKEAALGAHA  216 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHH-------------HHHH-TCEEESCHHHHHTTCSE
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHH-------------Hhhc-eeEEECCHHHHhcCCCE
Confidence            488999999998 89999999999999999999876432211000             0000 01124689999999999


Q ss_pred             EEEeec-CC-----cc------ccCCCCHHHHccCCCCcEEEEcC---CCCCCCH
Q 019081          229 VVCCLS-LN-----KQ------TAGIVNKSFLSSMKKGSLLVNIA---RGGLLDY  268 (346)
Q Consensus       229 V~~~lP-lt-----~~------T~~li~~~~l~~mk~gailIN~s---Rg~~vd~  268 (346)
                      |..-.= ..     ..      ...-++.+.++++|++++|.-+.   ||.=|+.
T Consensus       217 vy~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~  271 (301)
T 2ef0_A          217 LYTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTE  271 (301)
T ss_dssp             EEECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCH
T ss_pred             EEecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCH
Confidence            987331 10     01      23567999999999999999886   5654444

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.80  E-value=0.02  Score=53.24  Aligned_cols=96  Identities=21%  Similarity=0.231  Sum_probs=68.1

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHH
Q 019081          150 TLLGKTVFILGF---GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  221 (346)
Q Consensus       150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  221 (346)
                      .+.|.+|+++|=   |++.++.+..+..| |++|.+..|..-..+.                ......+    ...++++
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~----------------~~~~~~g~~~~~~~d~~e  209 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARK----------------EILDELNYPVKEVENPFE  209 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCH----------------HHHTTCCSCEEEESCGGG
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCH----------------HHHHHcCCeEEEeCCHHH
Confidence            478999999998   59999999999999 9999998763221100                0011111    1368999


Q ss_pred             HhhcCCEEEEeecCCcc-----------ccCCCCHHHHccCCCCcEEEEcC
Q 019081          222 FASKADVVVCCLSLNKQ-----------TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       222 ll~~aDiV~~~lPlt~~-----------T~~li~~~~l~~mk~gailIN~s  261 (346)
                      .++++|+|..-.=-.+.           ...-++.+.++++||+++|.-+.
T Consensus       210 av~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          210 VINEVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             TGGGCSEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             HhcCCCEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence            99999999775432211           13567888888889888887774

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.80  E-value=0.00044  Score=62.92  Aligned_cols=116  Identities=22%  Similarity=0.293  Sum_probs=67.4

Q ss_pred             ccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccc------cchhh----hc------cc
Q 019081          142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ------SSALA----VK------NG  204 (346)
Q Consensus       142 ~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~------~~~~~----~~------~~  204 (346)
                      .|+......|.+++|.|+|+|.+|..+++.|...|. ++..+|...-....-.+.      ..+..    ..      +-
T Consensus        17 ~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np   96 (251)
T 1zud_1           17 DIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNP   96 (251)
T ss_dssp             TTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCT
T ss_pred             hcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCC
Confidence            354333357899999999999999999999999998 688887653211000000      00000    00      00


Q ss_pred             cc-cccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          205 II-DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       205 ~~-~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      .. ...........+++++++++|+|+.++. +.+++.++++...+.   +.-+|..+
T Consensus        97 ~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~  150 (251)
T 1zud_1           97 DIQLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS  150 (251)
T ss_dssp             TSEEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             CCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence            00 0000000011346678899999999887 567788887766543   33356553

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.79  E-value=0.0011  Score=63.16  Aligned_cols=65  Identities=17%  Similarity=0.177  Sum_probs=46.5

Q ss_pred             CeEEEEecCHHHHH-HHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhcC-
Q 019081          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKA-  226 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~a-  226 (346)
                      .++||||+|.||+. .++.++.. +++++ ++|++..+..                 .....++   .+.++++++++. 
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~ll~~~~   68 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERAR-----------------RVHRFISDIPVLDNVPAMLNQVP   68 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHG-----------------GGGGTSCSCCEESSHHHHHHHSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH-----------------HHHHhcCCCcccCCHHHHhcCCC
Confidence            48999999999995 78888765 78876 6787654321                 1122221   257899999855 


Q ss_pred             -CEEEEeecC
Q 019081          227 -DVVVCCLSL  235 (346)
Q Consensus       227 -DiV~~~lPl  235 (346)
                       |+|++++|.
T Consensus        69 vD~V~i~tp~   78 (359)
T 3m2t_A           69 LDAVVMAGPP   78 (359)
T ss_dssp             CSEEEECSCH
T ss_pred             CCEEEEcCCc
Confidence             999999984

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.79  E-value=0.00042  Score=64.77  Aligned_cols=121  Identities=14%  Similarity=0.103  Sum_probs=67.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccccc-CCcCCHHHHhhcCCEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~  230 (346)
                      ++|+|||.|.+|..+|..+...|.  +|..+|++.........     ...+.  ....... ....+. +.+++||+|+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~-----~l~~~--~~~~~~~~i~~~~~-~a~~~aDvVI   72 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAE-----DIAHA--APVSHGTRVWHGGH-SELADAQVVI   72 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHH-----HHTTS--CCTTSCCEEEEECG-GGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH-----hhhhh--hhhcCCeEEEECCH-HHhCCCCEEE
Confidence            379999999999999999988888  99999986532110000     00000  0000000 011233 5688999999


Q ss_pred             EeecCCccccCC-----CC------H---HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          231 CCLSLNKQTAGI-----VN------K---SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       231 ~~lPlt~~T~~l-----i~------~---~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                      ++++. +...++     +.      +   +.+....|++++|+++-+.=+....+.+.....++.|.
T Consensus        73 i~~~~-~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           73 LTAGA-NQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             ECC-------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             EcCCC-CCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            99953 222121     10      1   23333468999999866544444445555555566555

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.78  E-value=0.002  Score=60.85  Aligned_cols=126  Identities=12%  Similarity=0.066  Sum_probs=69.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|||.|.+|..+|..+...|+ +|..+|++.......... ....  ..  ..... ......++ +.+++||+|++
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~-l~~~--~~--~~~~~~~i~~t~d~-~al~~aD~VI~   88 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALD-LNHC--MA--LIGSPAKIFGENNY-EYLQNSDVVII   88 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHH-HHHH--HH--HHTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH-HHhH--hh--ccCCCCEEEECCCH-HHHCCCCEEEE
Confidence            589999999999999999988888 999999875432110000 0000  00  00000 00012466 77899999999


Q ss_pred             eecCCccccCCC-----------CH---HHHccCCCCcEEEEcCCCCCCCHHHHHHHH--HhCCCeEEE--Ee
Q 019081          232 CLSLNKQTAGIV-----------NK---SFLSSMKKGSLLVNIARGGLLDYEAIAHYL--ECGHLGGLG--ID  286 (346)
Q Consensus       232 ~lPlt~~T~~li-----------~~---~~l~~mk~gailIN~sRg~~vd~~aL~~aL--~~g~i~ga~--lD  286 (346)
                      +++. +...++-           -+   +.+....|++++|+++-..=+....+.+.-  ...++.|.+  ||
T Consensus        89 avg~-p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~rviG~~t~Ld  160 (328)
T 2hjr_A           89 TAGV-PRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYFKEKSGIPANKVCGMSGVLD  160 (328)
T ss_dssp             CCSC-CCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEESCHHHH
T ss_pred             cCCC-CCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHhcCCChhhEEEeCcHHH
Confidence            9842 2222221           01   122333488999988542222222222221  345676663  56

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=96.76  E-value=0.00098  Score=62.40  Aligned_cols=106  Identities=13%  Similarity=0.145  Sum_probs=60.5

Q ss_pred             CeEEEEecCHHHH-HHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC--C-cCCHHHHh-hcCC
Q 019081          154 KTVFILGFGNIGV-ELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--C-HEDIFEFA-SKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~-~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~ell-~~aD  227 (346)
                      .++||||+|.||+ .+++.++.. +++++++|++..+..                 .....++  . ..+..+++ +++|
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~~l~~~~D   65 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLG-----------------TLATRYRVSATCTDYRDVLQYGVD   65 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHH-----------------HHHHHTTCCCCCSSTTGGGGGCCS
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHH-----------------HHHHHcCCCccccCHHHHhhcCCC
Confidence            3799999999998 488888764 788888888654321                 1111111  1 23344555 7899


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCc-EEEEc-CCCCCCCHHHHHHHHHhCCCe
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNI-ARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~ga-ilIN~-sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +|++++|....     -.-..+.++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        66 ~V~i~tp~~~h-----~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           66 AVMIHAATDVH-----STLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             EEEECSCGGGH-----HHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             EEEEECCchhH-----HHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            99999984321     111223345553 55542 111222344577776665543

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.73  E-value=0.0011  Score=62.03  Aligned_cols=65  Identities=17%  Similarity=0.203  Sum_probs=45.5

Q ss_pred             eEEEEecCHHHHHH-HHHHccCCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--cCC
Q 019081          155 TVFILGFGNIGVEL-AKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KAD  227 (346)
Q Consensus       155 tvgIiG~G~IG~~v-A~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~aD  227 (346)
                      +|||||+|.||+.. ++.++.-|++++ ++|++..+..                 ......+   ...+++++++  ++|
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~-----------------~~~~~~g~~~~~~~~~~~l~~~~~D   64 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGA-----------------AYATENGIGKSVTSVEELVGDPDVD   64 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHH-----------------HHHHHTTCSCCBSCHHHHHTCTTCC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCCCCC
Confidence            79999999999998 766655788876 6787653311                 1111111   2468999987  499


Q ss_pred             EEEEeecCC
Q 019081          228 VVVCCLSLN  236 (346)
Q Consensus       228 iV~~~lPlt  236 (346)
                      +|++++|..
T Consensus        65 ~V~i~tp~~   73 (332)
T 2glx_A           65 AVYVSTTNE   73 (332)
T ss_dssp             EEEECSCGG
T ss_pred             EEEEeCChh
Confidence            999999843

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.72  E-value=0.0016  Score=58.19  Aligned_cols=97  Identities=21%  Similarity=0.195  Sum_probs=60.2

Q ss_pred             CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      ...++.|++|.|||.|.+|..-++.|...|++|+++++...+....      +.- .+.+ .+...  .+  -++.+..+
T Consensus        25 ifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~------l~~-~~~i-~~i~~--~~--~~~dL~~a   92 (223)
T 3dfz_A           25 VMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINE------WEA-KGQL-RVKRK--KV--GEEDLLNV   92 (223)
T ss_dssp             EEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHH------HHH-TTSC-EEECS--CC--CGGGSSSC
T ss_pred             cEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHH------HHH-cCCc-EEEEC--CC--CHhHhCCC
Confidence            3568999999999999999999999999999999999764321000      000 0000 01110  11  12446789


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      |+|+.+.. .++    +|.......+ -.++||++
T Consensus        93 dLVIaAT~-d~~----~N~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A           93 FFIVVATN-DQA----VNKFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             SEEEECCC-CTH----HHHHHHHHSC-TTCEEEC-
T ss_pred             CEEEECCC-CHH----HHHHHHHHHh-CCCEEEEe
Confidence            98887643 333    3445444456 56778884

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.71  E-value=0.00059  Score=64.85  Aligned_cols=68  Identities=16%  Similarity=0.152  Sum_probs=47.5

Q ss_pred             CCCeEEEEecCHHHH-HHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh--
Q 019081          152 LGKTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--  224 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~-~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--  224 (346)
                      .-.++||||+|.||+ .+++.++.. |++|+ ++|++..+..                 ...+.++  ...+++++++  
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~g~~~~~~~~~ll~~~   88 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAK-----------------RFTERFGGEPVEGYPALLERD   88 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHH-----------------HHHHHHCSEEEESHHHHHTCT
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHH-----------------HHHHHcCCCCcCCHHHHhcCC
Confidence            346899999999998 788888766 78876 5677643311                 1111111  2368999996  


Q ss_pred             cCCEEEEeecCC
Q 019081          225 KADVVVCCLSLN  236 (346)
Q Consensus       225 ~aDiV~~~lPlt  236 (346)
                      +.|+|++++|..
T Consensus        89 ~~D~V~i~tp~~  100 (350)
T 3rc1_A           89 DVDAVYVPLPAV  100 (350)
T ss_dssp             TCSEEEECCCGG
T ss_pred             CCCEEEECCCcH
Confidence            589999999854

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=96.70  E-value=0.00065  Score=63.38  Aligned_cols=104  Identities=14%  Similarity=0.172  Sum_probs=61.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  229 (346)
                      .+|||||+|.||+..++.++.. +++++ ++|++..+..                 ..........+++++++  ++|+|
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~D~V   73 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLA-----------------LVPPGCVIESDWRSVVSAPEVEAV   73 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHT-----------------TCCTTCEEESSTHHHHTCTTCCEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHH-----------------HHHhhCcccCCHHHHhhCCCCCEE
Confidence            4799999999999999988765 67754 7787643311                 01111112467889985  79999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCc-EEEEc-CCCCCCCHHHHHHHHHhCC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNI-ARGGLLDYEAIAHYLECGH  279 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~ga-ilIN~-sRg~~vd~~aL~~aL~~g~  279 (346)
                      ++++|.....     .-....++.|. +++.- .--.+-+.++|.++.++..
T Consensus        74 ~i~tp~~~h~-----~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g  120 (315)
T 3c1a_A           74 IIATPPATHA-----EITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATG  120 (315)
T ss_dssp             EEESCGGGHH-----HHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHC
T ss_pred             EEeCChHHHH-----HHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcC
Confidence            9999843221     11223355564 55542 1112223355666665433

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.68  E-value=0.039  Score=51.51  Aligned_cols=103  Identities=16%  Similarity=0.122  Sum_probs=68.8

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .+.|.+|+++|=|  ++.++.+..+..||++|....|..-..+.....   .      ..+.+...+    ...++++.+
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~---~------~~~~a~~~G~~~~~~~d~~eav  215 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRA---A------AERRAQDTGASVTVTADAHAAA  215 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHH---H------HHHHHHHHTCCEEEESCHHHHH
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHH---H------HHHHHHHcCCeEEEEECHHHHh
Confidence            4789999999996  999999999999999999987643221100000   0      000000111    247899999


Q ss_pred             hcCCEEEEeec-C------Ccc-----ccCCCCHHHHccCCCCcEEEEcC
Q 019081          224 SKADVVVCCLS-L------NKQ-----TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       224 ~~aDiV~~~lP-l------t~~-----T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +++|+|..-.= .      .++     ...-++.+.++++||+++|.-+.
T Consensus       216 ~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          216 AGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             TTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             cCCCEEEecceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            99999988332 0      011     23567888888899999888774

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.68  E-value=0.0011  Score=62.61  Aligned_cols=66  Identities=18%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             CeEEEEecCHHHHHHHHHHc-c-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhc-
Q 019081          154 KTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK-  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~-~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~-  225 (346)
                      .++||||+|.||+..++.++ . -+++++ ++|++..+..                 .....++    ...++++++++ 
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~-----------------~~~~~~g~~~~~~~~~~~ll~~~   65 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQ-----------------KVVEQYQLNATVYPNDDSLLADE   65 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHH-----------------HHHHHTTCCCEEESSHHHHHHCT
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHH-----------------HHHHHhCCCCeeeCCHHHHhcCC
Confidence            37999999999999999887 4 478876 5777643311                 1111111    24789999976 


Q ss_pred             -CCEEEEeecCC
Q 019081          226 -ADVVVCCLSLN  236 (346)
Q Consensus       226 -aDiV~~~lPlt  236 (346)
                       .|+|++++|..
T Consensus        66 ~~D~V~i~tp~~   77 (344)
T 3mz0_A           66 NVDAVLVTSWGP   77 (344)
T ss_dssp             TCCEEEECSCGG
T ss_pred             CCCEEEECCCch
Confidence             99999999854

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.68  E-value=0.0011  Score=58.50  Aligned_cols=72  Identities=18%  Similarity=0.129  Sum_probs=47.2

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCc---CCHHHH-hhcCCEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEF-ASKADVVV  230 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~el-l~~aDiV~  230 (346)
                      ++.|+|+|.+|+.+|+.|...|.+|+++|+++.........       .    ...-..+..   ..++++ +.+||+|+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-------~----~~~~i~gd~~~~~~l~~a~i~~ad~vi   70 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-------L----KATIIHGDGSHKEILRDAEVSKNDVVV   70 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-------S----SSEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------c----CCeEEEcCCCCHHHHHhcCcccCCEEE
Confidence            68999999999999999999999999999875432110000       0    000001112   234444 67899999


Q ss_pred             EeecCCc
Q 019081          231 CCLSLNK  237 (346)
Q Consensus       231 ~~lPlt~  237 (346)
                      +++|...
T Consensus        71 ~~~~~d~   77 (218)
T 3l4b_C           71 ILTPRDE   77 (218)
T ss_dssp             ECCSCHH
T ss_pred             EecCCcH
Confidence            9998543

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.68  E-value=0.029  Score=52.42  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=66.4

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccc-ccccccCCcCCHHHHhhcCC
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID-DLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~aD  227 (346)
                      .+.|++|++||= +++.++.+..+..||++|.+..|..-..+.            +++. ..........++++.++++|
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~------------~~~~~~~g~~v~~~~d~~eav~~aD  218 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDA------------KLVDAESAPFYQVFDDPNEACKGAD  218 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCG------------GGSCGGGGGGEEECSSHHHHTTTCS
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCH------------HHHHHHcCCeEEEEcCHHHHhcCCC
Confidence            478999999996 578888888999999999988763211100            0000 00000012468999999999


Q ss_pred             EEEEee----cC--------CccccCCCCHHHHccCCCCcEEEEcC
Q 019081          228 VVVCCL----SL--------NKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       228 iV~~~l----Pl--------t~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +|..-+    ..        ..-...-++.+.++++|++++|.-+.
T Consensus       219 vvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          219 LVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             EEEECCC------------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EEEecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence            998743    10        00123567999999999999998774

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.65  E-value=0.0014  Score=62.31  Aligned_cols=67  Identities=21%  Similarity=0.283  Sum_probs=48.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHc-c-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh-
Q 019081          153 GKTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS-  224 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~-~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~-  224 (346)
                      -.+|||||+|.||+..++.++ . -|++++ ++|++..+...                 ....++    .+.+++++++ 
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~-----------------~a~~~g~~~~~~~~~~~ll~~   85 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQA-----------------ALDKYAIEAKDYNDYHDLIND   85 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHH-----------------HHHHHTCCCEEESSHHHHHHC
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHH-----------------HHHHhCCCCeeeCCHHHHhcC
Confidence            358999999999999999887 4 478876 57876543211                 111111    2478999997 


Q ss_pred             -cCCEEEEeecCC
Q 019081          225 -KADVVVCCLSLN  236 (346)
Q Consensus       225 -~aDiV~~~lPlt  236 (346)
                       +.|+|++++|..
T Consensus        86 ~~~D~V~i~tp~~   98 (357)
T 3ec7_A           86 KDVEVVIITASNE   98 (357)
T ss_dssp             TTCCEEEECSCGG
T ss_pred             CCCCEEEEcCCcH
Confidence             489999999854

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.64  E-value=0.0039  Score=65.17  Aligned_cols=132  Identities=17%  Similarity=0.153  Sum_probs=79.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchh--hhccccccccccc--cCC-cCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGIIDDLVDE--KGC-HEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~--~~~-~~~l~ell~~aD  227 (346)
                      ++|||||.|.||..+|..+...|++|+.+|++.......... ...+  .+...........  ... ..++ +.+++||
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aD  395 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVD  395 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCG-GGGGSCS
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcH-HHHhhCC
Confidence            699999999999999999999999999999876432110000 0000  0000000000000  001 2334 4478999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  289 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  289 (346)
                      +|+=++|-+-+.+.-+-++.=+.++++++|-.-..+  +.-.+|.++++ ..=.-+++=.|.
T Consensus       396 lVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfn  454 (742)
T 3zwc_A          396 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFS  454 (742)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCS
T ss_pred             EEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccC
Confidence            999999988776666666666678999987654333  55566766653 222334555553

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.60  E-value=0.0015  Score=62.38  Aligned_cols=98  Identities=18%  Similarity=0.213  Sum_probs=63.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .|++|.|+|.|.||..+++.++.+|++|++++++..+....... .+       .+...+. .....+.++....|+|+.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-lG-------a~~v~~~-~~~~~~~~~~~~~D~vid  257 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN-FG-------ADSFLVS-RDQEQMQAAAGTLDGIID  257 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT-SC-------CSEEEET-TCHHHHHHTTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-cC-------CceEEec-cCHHHHHHhhCCCCEEEE
Confidence            68899999999999999999999999999999865432110000 00       0000000 001123333456899998


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      ++.....     -...++.|+++..+|+++..
T Consensus       258 ~~g~~~~-----~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          258 TVSAVHP-----LLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             CCSSCCC-----SHHHHHHEEEEEEEEECCCC
T ss_pred             CCCcHHH-----HHHHHHHHhcCCEEEEEccC
Confidence            8874322     25667888999999998753

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.60  E-value=0.0024  Score=60.14  Aligned_cols=74  Identities=14%  Similarity=0.056  Sum_probs=47.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhcccccccc-ccccC-CcCCHHHHhhcCCEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKG-CHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~ell~~aDiV~  230 (346)
                      ++|+|||.|.+|..+|..+...|. +|..+|++..........   +   ....... ..... ...++ +.+++||+|+
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~---l---~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi   77 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALD---T---SHTNVMAYSNCKVSGSNTY-DDLAGADVVI   77 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHH---H---HTHHHHHTCCCCEEEECCG-GGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH---H---HhhhhhcCCCcEEEECCCH-HHhCCCCEEE
Confidence            589999999999999999988787 899999875432110000   0   0000000 00000 12566 7789999999


Q ss_pred             Eeec
Q 019081          231 CCLS  234 (346)
Q Consensus       231 ~~lP  234 (346)
                      ++++
T Consensus        78 ~a~g   81 (322)
T 1t2d_A           78 VTAG   81 (322)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            9984

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.57  E-value=0.0032  Score=60.83  Aligned_cols=94  Identities=12%  Similarity=0.143  Sum_probs=65.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      -.++-|+|.|.+|+++++.++.+|++|+++|++..-.                            + .+-++.+|-++..
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~----------------------------~-~~~fp~a~~~~~~  254 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA----------------------------T-TARFPTADEVVVD  254 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS----------------------------C-TTTCSSSSEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc----------------------------c-cccCCCceEEEeC
Confidence            3489999999999999999999999999999764310                            0 0112455545444


Q ss_pred             ecCCccccCCCCHHHHcc------CCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEE
Q 019081          233 LSLNKQTAGIVNKSFLSS------MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGI  285 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~------mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~l  285 (346)
                      .|.          +.+..      +.++.++|=+.++.-.|...|..+|+++...+.|+
T Consensus       255 ~p~----------~~~~~~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG~  303 (386)
T 2we8_A          255 WPH----------RYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGA  303 (386)
T ss_dssp             CHH----------HHHHHHHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEEE
T ss_pred             ChH----------HHHHhhccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEEE
Confidence            331          12222      66778888888888888888888888874554443

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.56  E-value=0.0018  Score=61.84  Aligned_cols=73  Identities=21%  Similarity=0.243  Sum_probs=48.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      .++|+|+|.|.+|+.+|+.|+. ..+|.+.|++.........          ......-......++.++++++|+|+++
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~----------~~~~~~~d~~d~~~l~~~~~~~DvVi~~   84 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE----------FATPLKVDASNFDKLVEVMKEFELVIGA   84 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT----------TSEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc----------cCCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence            3479999999999999999976 5789998886543211000          0000000001234678889999999999


Q ss_pred             ecCC
Q 019081          233 LSLN  236 (346)
Q Consensus       233 lPlt  236 (346)
                      +|..
T Consensus        85 ~p~~   88 (365)
T 3abi_A           85 LPGF   88 (365)
T ss_dssp             CCGG
T ss_pred             cCCc
Confidence            9854

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.55  E-value=0.0017  Score=61.17  Aligned_cols=66  Identities=20%  Similarity=0.242  Sum_probs=46.3

Q ss_pred             CeEEEEecCHHHHHHHHHHc-c-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--c
Q 019081          154 KTVFILGFGNIGVELAKRLR-P-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--K  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~-~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~  225 (346)
                      .+|||||+|.||+..++.++ . -|++++ ++|++..+..                 ......+   ...+++++++  +
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~~l~~~~   71 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLE-----------------WAKNELGVETTYTNYKDMIDTEN   71 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHH-----------------HHHHTTCCSEEESCHHHHHTTSC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHH-----------------HHHHHhCCCcccCCHHHHhcCCC
Confidence            48999999999999999887 4 478854 6787653310                 1111111   2468899986  6


Q ss_pred             CCEEEEeecCC
Q 019081          226 ADVVVCCLSLN  236 (346)
Q Consensus       226 aDiV~~~lPlt  236 (346)
                      +|+|++++|..
T Consensus        72 ~D~V~i~tp~~   82 (346)
T 3cea_A           72 IDAIFIVAPTP   82 (346)
T ss_dssp             CSEEEECSCGG
T ss_pred             CCEEEEeCChH
Confidence            99999999843

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.54  E-value=0.0013  Score=64.18  Aligned_cols=94  Identities=17%  Similarity=0.174  Sum_probs=57.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC---HHHH-hhcCCE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEF-ASKADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDi  228 (346)
                      +.+|.|+|+|++|+.+|+.|...|.+|+++|+++........  .          ...--.+...+   |.++ +.+||+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~--~----------g~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK--F----------GMKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH--T----------TCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh--C----------CCeEEEcCCCCHHHHHhcCCCccCE
Confidence            347999999999999999999999999999987643211000  0          00001122223   3333 678999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      |++++|..+.+  +.-....+.+.|...+|--
T Consensus        72 viv~~~~~~~n--~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           72 LINAIDDPQTN--LQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             EEECCSSHHHH--HHHHHHHHHHCTTCEEEEE
T ss_pred             EEECCCChHHH--HHHHHHHHHhCCCCeEEEE
Confidence            99999854332  2223344455566444433

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.54  E-value=0.0022  Score=57.04  Aligned_cols=67  Identities=16%  Similarity=0.182  Sum_probs=41.4

Q ss_pred             CeEEEEecCHHHHHHHHH--HccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          154 KTVFILGFGNIGVELAKR--LRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~--l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      .+++|||+|++|+.+++.  ....|++++ ++|.++.......              ....-. ...++++++++.|+++
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i--------------~gv~V~-~~~dl~eli~~~D~Vi  150 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEV--------------GGVPVY-NLDDLEQHVKDESVAI  150 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEE--------------TTEEEE-EGGGHHHHCSSCCEEE
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHh--------------cCCeee-chhhHHHHHHhCCEEE
Confidence            479999999999999994  445688866 5676654321100              000000 2457889887779999


Q ss_pred             EeecC
Q 019081          231 CCLSL  235 (346)
Q Consensus       231 ~~lPl  235 (346)
                      +++|.
T Consensus       151 IAvPs  155 (215)
T 2vt3_A          151 LTVPA  155 (215)
T ss_dssp             ECSCH
T ss_pred             EecCc
Confidence            99985

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.54  E-value=0.0017  Score=57.80  Aligned_cols=90  Identities=16%  Similarity=0.191  Sum_probs=54.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcC---CHHHH-hhcCCE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE---DIFEF-ASKADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~el-l~~aDi  228 (346)
                      .+++.|+|+|.+|+.+|+.|...|+ |+++|+++.......   .+.        ..  -.+...   .|+++ +.++|.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~---~~~--------~~--i~gd~~~~~~l~~a~i~~ad~   74 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR---SGA--------NF--VHGDPTRVSDLEKANVRGARA   74 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH---TTC--------EE--EESCTTCHHHHHHTTCTTCSE
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh---cCC--------eE--EEcCCCCHHHHHhcCcchhcE
Confidence            4579999999999999999999999 999998654311000   000        00  011222   33344 678999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEE
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLV  258 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailI  258 (346)
                      |++++|..+.  ++.-....+.+.++..+|
T Consensus        75 vi~~~~~d~~--n~~~~~~a~~~~~~~~ii  102 (234)
T 2aef_A           75 VIVDLESDSE--TIHCILGIRKIDESVRII  102 (234)
T ss_dssp             EEECCSCHHH--HHHHHHHHHHHCSSSEEE
T ss_pred             EEEcCCCcHH--HHHHHHHHHHHCCCCeEE
Confidence            9999875322  233334455566663333

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.54  E-value=0.0054  Score=57.53  Aligned_cols=102  Identities=15%  Similarity=0.166  Sum_probs=62.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .+|||||+|+||+.+++.+... +++++ ++|++.... ..      +        . ..   ...++++++.++|+|++
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~-~~------~--------g-v~---~~~d~~~ll~~~DvVii   64 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-TK------T--------P-VF---DVADVDKHADDVDVLFL   64 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-SS------S--------C-EE---EGGGGGGTTTTCSEEEE
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHh-hc------C--------C-Cc---eeCCHHHHhcCCCEEEE
Confidence            3799999999999999998765 67754 677764321 00      0        0 00   12466777788999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-C-CH-HHHHHHHHhCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-L-DY-EAIAHYLECGH  279 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-v-d~-~aL~~aL~~g~  279 (346)
                      ++|....     -......++.|.-+|...-..+ + +. +.|.++.+++.
T Consensus        65 atp~~~h-----~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           65 CMGSATD-----IPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             CSCTTTH-----HHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             cCCcHHH-----HHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            9985422     1223344666765555443332 2 22 45666666544

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.001  Score=65.92  Aligned_cols=80  Identities=16%  Similarity=0.280  Sum_probs=50.1

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhc
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK  225 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~  225 (346)
                      +..+.+++|+|+|.|.+|+.+++.|... |++|.+++|+..+.......       .+ . .... ......++.++++.
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-------~~-~-~~~~~D~~d~~~l~~~l~~   88 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-------SG-S-KAISLDVTDDSALDKVLAD   88 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-------GT-C-EEEECCTTCHHHHHHHHHT
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-------cC-C-cEEEEecCCHHHHHHHHcC
Confidence            4578899999999999999999999877 78999999875431110000       00 0 0000 00012356678889


Q ss_pred             CCEEEEeecCC
Q 019081          226 ADVVVCCLSLN  236 (346)
Q Consensus       226 aDiV~~~lPlt  236 (346)
                      +|+|++++|..
T Consensus        89 ~DvVIn~tp~~   99 (467)
T 2axq_A           89 NDVVISLIPYT   99 (467)
T ss_dssp             SSEEEECSCGG
T ss_pred             CCEEEECCchh
Confidence            99999999854

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.50  E-value=0.0016  Score=61.29  Aligned_cols=66  Identities=12%  Similarity=0.164  Sum_probs=46.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC---CEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG---VKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--  224 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--  224 (346)
                      .++||||+|.||+..++.++..+   ++++ ++|++..+..                 .....++   .+.+++++++  
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~-----------------~~a~~~~~~~~~~~~~~ll~~~   65 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAK-----------------EFAQKHDIPKAYGSYEELAKDP   65 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHH-----------------HHHHHHTCSCEESSHHHHHHCT
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCC
Confidence            37999999999999999988654   4655 5677543311                 1111111   2478999997  


Q ss_pred             cCCEEEEeecCC
Q 019081          225 KADVVVCCLSLN  236 (346)
Q Consensus       225 ~aDiV~~~lPlt  236 (346)
                      +.|+|++++|..
T Consensus        66 ~vD~V~i~tp~~   77 (334)
T 3ohs_X           66 NVEVAYVGTQHP   77 (334)
T ss_dssp             TCCEEEECCCGG
T ss_pred             CCCEEEECCCcH
Confidence            699999999854

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.0028  Score=61.34  Aligned_cols=107  Identities=13%  Similarity=0.121  Sum_probs=63.6

Q ss_pred             eEEEEecCHHHHHHHHHHccCC--------CEEEEEcCCCcccccc-ccccchhhhccccccc--cccccCCcCCHHHHh
Q 019081          155 TVFILGFGNIGVELAKRLRPFG--------VKIIATKRSWASHSQV-SCQSSALAVKNGIIDD--LVDEKGCHEDIFEFA  223 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G--------~~V~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell  223 (346)
                      +|+|||.|.-|.++|..|...|        .+|..|.|......+. .+.-...+.....+..  +.+......++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            8999999999999999987544        4688887654311000 0000000000000000  000111236899999


Q ss_pred             hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      +.||+|++.+|. ...+.++. +.-..++++..+|+++-|
T Consensus       116 ~~ad~ii~avPs-~~~r~~l~-~l~~~~~~~~~iv~~~KG  153 (391)
T 4fgw_A          116 KDVDIIVFNIPH-QFLPRICS-QLKGHVDSHVRAISCLKG  153 (391)
T ss_dssp             TTCSEEEECSCG-GGHHHHHH-HHTTTSCTTCEEEECCCS
T ss_pred             hcCCEEEEECCh-hhhHHHHH-HhccccCCCceeEEeccc
Confidence            999999999994 44444432 233456789999999987

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.36  E-value=0.026  Score=55.29  Aligned_cols=123  Identities=14%  Similarity=0.122  Sum_probs=71.7

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEE-EEcCCCcccccc----ccccchhhhccccccccccccCCcCCHHHH
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASHSQV----SCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (346)
                      |.++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+..- ..+    ......+....+-+.++..  ....+.+++
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i-~dp~Gld~~~l~~~~~~~g~i~~y~~--a~~i~~~ei  306 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTV-YNEAGIDPYDLLRHVQEFGGVRGYPK--AEPLPAADF  306 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEE-ECTTCCCHHHHHHHHHHTSSSTTCTT--SEECCHHHH
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEE-ECCCCCCHHHHHHHHHhcCCcccCCC--ceEcCchhh
Confidence            457999999999999999999999999999998 44542110 000    0000000000000000000  012244566


Q ss_pred             h-hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          223 A-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       223 l-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      + ..||+++-|..     .+.|+.+....++ --+++-.+-+++- .+ -.+.|.+..|.
T Consensus       307 ~~~~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~e-A~~iL~~~GI~  358 (440)
T 3aog_A          307 WGLPVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PA-ADDILLEKGVL  358 (440)
T ss_dssp             TTCCCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HH-HHHHHHHHTCE
T ss_pred             hcCCCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HH-HHHHHHHCCCE
Confidence            5 47999998754     3466777767774 4567777778764 33 34566666554

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.34  E-value=0.0068  Score=52.84  Aligned_cols=100  Identities=15%  Similarity=0.173  Sum_probs=61.3

Q ss_pred             CeEEEEe-cCHHHHHHHHHHc-cCCCEEEEEcCCCc-cccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILG-FGNIGVELAKRLR-PFGVKIIATKRSWA-SHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~-~~G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  229 (346)
                      |++.|.| .|.||+.+++.|. ..|++|++++|+.. ........      ..+  ..... ......+++++++.+|+|
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~------~~~--~~~~~~D~~d~~~~~~~~~~~d~v   77 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIID------HER--VTVIEGSFQNPGXLEQAVTNAEVV   77 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHT------STT--EEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccC------CCc--eEEEECCCCCHHHHHHHHcCCCEE
Confidence            6799999 5999999999999 89999999998754 21100000      000  00000 001234567888999999


Q ss_pred             EEeecCCccccCCCCHHHHccCCC-C-cEEEEcCCCCC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKK-G-SLLVNIARGGL  265 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~-g-ailIN~sRg~~  265 (346)
                      +.+..... ..   ....+..|++ | ..||++|....
T Consensus        78 v~~ag~~n-~~---~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           78 FVGAMESG-SD---MASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             EESCCCCH-HH---HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             EEcCCCCC-hh---HHHHHHHHHhcCCCeEEEEeecee
Confidence            99886431 11   3445555543 2 36888875443

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.34  E-value=0.062  Score=50.34  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=69.4

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  224 (346)
                      .+.|.+|+++|= +++.++++..+..||++|.+..|..-..+.....   .      ..+.+...+    ...++++.++
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~---~------~~~~a~~~g~~~~~~~d~~eav~  222 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIK---W------AEQNAAESGGSFELLHDPVKAVK  222 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHH---H------HHHHHHHHTCEEEEESCHHHHTT
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHH---H------HHHHHHHcCCeEEEEeCHHHHhC
Confidence            488999999997 8999999999999999999987643221110000   0      000000111    2478999999


Q ss_pred             cCCEEEEeecC-------Ccc-----ccCCCCHHHHccCCCCcEEEEcC
Q 019081          225 KADVVVCCLSL-------NKQ-----TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       225 ~aDiV~~~lPl-------t~~-----T~~li~~~~l~~mk~gailIN~s  261 (346)
                      ++|+|..-.=.       .++     ...-++.+.++.+||+++|.-+.
T Consensus       223 ~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          223 DADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             TCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             CCCEEEEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence            99999883321       011     23567899999999999998874

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.32  E-value=0.0095  Score=58.63  Aligned_cols=103  Identities=21%  Similarity=0.308  Sum_probs=69.7

Q ss_pred             ccccCCCeEEEEecC----------HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcC
Q 019081          148 GETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE  217 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (346)
                      +..+.|++|+|+|+-          .-...+++.|...|++|.+|||.....  ..              .......-..
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~--~~--------------~~~~~~~~~~  380 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQ--AS--------------KMLTDVEFVE  380 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHH--HG--------------GGCSSCCBCS
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHh--HH--------------HhcCCceEec
Confidence            457899999999997          567899999999999999999865321  00              0000001125


Q ss_pred             CHHHHhhcCCEEEEeecCCccccCCCCHHHHc-cCCCCcEEEEcCCCCCCCHHHH
Q 019081          218 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGLLDYEAI  271 (346)
Q Consensus       218 ~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~-~mk~gailIN~sRg~~vd~~aL  271 (346)
                      ++++.++.||.|+++++-.+ -+. ++-+.+. .|+ +.+++++ |+ +.+.+.+
T Consensus       381 ~~~~~~~~ad~vvi~t~~~~-f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          381 NPYAAADGADALVIVTEWDA-FRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             CHHHHHTTBSEEEECSCCTT-TTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             ChhHHhcCCCEEEEeeCCHH-hhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            78899999999999987432 222 4555554 465 4678886 54 4565544

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.32  E-value=0.0048  Score=54.44  Aligned_cols=80  Identities=20%  Similarity=0.199  Sum_probs=50.8

Q ss_pred             CccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc
Q 019081          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (346)
                      ....+.|+++.|.|. |.||+.+++.|...|++|++++|+..+......  ...       ......-.. .++.+.+..
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--~~~-------~~~~~~Dl~-~~~~~~~~~   84 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--RGA-------SDIVVANLE-EDFSHAFAS   84 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--TTC-------SEEEECCTT-SCCGGGGTT
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--CCC-------ceEEEcccH-HHHHHHHcC
Confidence            346789999999998 999999999999999999999987543211000  000       000000001 567788889


Q ss_pred             CCEEEEeecCC
Q 019081          226 ADVVVCCLSLN  236 (346)
Q Consensus       226 aDiV~~~lPlt  236 (346)
                      +|+|+.+....
T Consensus        85 ~D~vi~~ag~~   95 (236)
T 3e8x_A           85 IDAVVFAAGSG   95 (236)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            99999887654

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.31  E-value=0.0035  Score=58.44  Aligned_cols=64  Identities=27%  Similarity=0.299  Sum_probs=41.0

Q ss_pred             CeEEEEecCHHHHHHHHHHcc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .+|||||+|.||+.+++.++. -++++. ++|++..+...       +         ... .....++.+. .++|+|++
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~-------~---------g~~-~~~~~~l~~~-~~~DvVii   71 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF-------E---------LQP-FRVVSDIEQL-ESVDVALV   71 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC--------------C---------CTT-SCEESSGGGS-SSCCEEEE
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH-------c---------CCC-cCCHHHHHhC-CCCCEEEE
Confidence            489999999999999998875 478887 57876543110       0         000 1113455554 78999999


Q ss_pred             eecC
Q 019081          232 CLSL  235 (346)
Q Consensus       232 ~lPl  235 (346)
                      ++|.
T Consensus        72 atp~   75 (304)
T 3bio_A           72 CSPS   75 (304)
T ss_dssp             CSCH
T ss_pred             CCCc
Confidence            9984

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.31  E-value=0.0017  Score=61.00  Aligned_cols=99  Identities=18%  Similarity=0.198  Sum_probs=58.4

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccccc---C-CcCCHHHHhhcC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---G-CHEDIFEFASKA  226 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~l~ell~~a  226 (346)
                      -++|+|||.|.||..+|..++..|.  +|..+|++........ .        +.. +.....   . -..+..+.+++|
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~-~--------dl~-~~~~~~~~~~~i~~~~~~al~~a   75 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDA-M--------DFN-HGKVFAPKPVDIWHGDYDDCRDA   75 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH-H--------HHH-HHTTSSSSCCEEEECCGGGTTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHH-h--------hHH-HHhhhcCCCeEEEcCcHHHhCCC
Confidence            3689999999999999998876564  8999998753211000 0        000 000000   0 001234678999


Q ss_pred             CEEEEeecCCccccCC-----CC------H---HHHccCCCCcEEEEcCC
Q 019081          227 DVVVCCLSLNKQTAGI-----VN------K---SFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       227 DiV~~~lPlt~~T~~l-----i~------~---~~l~~mk~gailIN~sR  262 (346)
                      |+|+++.|.. ...++     +.      .   +.+....|++++++++-
T Consensus        76 DvViia~~~~-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           76 DLVVICAGAN-QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (316)
T ss_dssp             SEEEECCSCC-CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CEEEEcCCCC-CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            9999998753 22222     10      1   12233358899999854

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.29  E-value=0.0036  Score=61.04  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=34.7

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      -+.|++|+|+|-|.+|+.+++.++.+|++|+++|+...
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            46899999999999999999999999999999997643

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.27  E-value=0.0043  Score=61.11  Aligned_cols=77  Identities=18%  Similarity=0.239  Sum_probs=49.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  230 (346)
                      .+++++|+|.|.||+.+++.|...|++|.+++|+..+.......   +   .+ . .... ......++.++++++|+|+
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~---~---~~-~-~~~~~Dv~d~~~l~~~l~~~DvVI   73 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG---V---QH-S-TPISLDVNDDAALDAEVAKHDLVI   73 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTT---C---TT-E-EEEECCTTCHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHh---c---CC-c-eEEEeecCCHHHHHHHHcCCcEEE
Confidence            46899999999999999999999999999999875331100000   0   00 0 0000 0001235667888999999


Q ss_pred             EeecCC
Q 019081          231 CCLSLN  236 (346)
Q Consensus       231 ~~lPlt  236 (346)
                      .++|..
T Consensus        74 n~a~~~   79 (450)
T 1ff9_A           74 SLIPYT   79 (450)
T ss_dssp             ECCC--
T ss_pred             ECCccc
Confidence            999864

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.26  E-value=0.077  Score=51.63  Aligned_cols=125  Identities=19%  Similarity=0.160  Sum_probs=74.5

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEE-EEcCCCccc-cc--cccccchhhhccccccccccccCCcCCHHHHh
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASH-SQ--VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA  223 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  223 (346)
                      +.++.|+||.|-|+|++|+.+|+.|..+|++|+ +.|.+..-. +.  .......+....+-+..+.   ....+-++++
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~---a~~~~~~~i~  292 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLF---TDVITNEELL  292 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGC---SCCBCHHHHH
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCC---cEEecCccce
Confidence            467999999999999999999999999999986 445431100 00  0000000000000000000   1223445655


Q ss_pred             -hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          224 -SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       224 -~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                       .+|||++-|..     .+.|+.+...+++ -.+++-.+-+++ . .+-.+.|++..|..+
T Consensus       293 ~~~~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t-~eA~~iL~~rGI~~~  345 (424)
T 3k92_A          293 EKDCDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-T-IDATKILNERGVLLV  345 (424)
T ss_dssp             HSCCSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-C-HHHHHHHHHTTCEEE
T ss_pred             eccccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-C-HHHHHHHHHCCCEEE
Confidence             67999987653     4678887777774 456777788885 3 344577777777543

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.24  E-value=0.0023  Score=60.34  Aligned_cols=65  Identities=14%  Similarity=0.158  Sum_probs=44.1

Q ss_pred             eEEEEecCHHHHH-HHHHHcc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--cC
Q 019081          155 TVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA  226 (346)
Q Consensus       155 tvgIiG~G~IG~~-vA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a  226 (346)
                      ++||||+|.||+. .+..++. -+++|+ ++|++..+..                 ...++++   .+.+++++++  +.
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~-----------------~~a~~~g~~~~y~d~~ell~~~~i   87 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAR-----------------EMADRFSVPHAFGSYEEMLASDVI   87 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHH-----------------HHHHHHTCSEEESSHHHHHHCSSC
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHH-----------------HHHHHcCCCeeeCCHHHHhcCCCC
Confidence            7999999999986 4565554 378876 4677543311                 1122222   2579999995  47


Q ss_pred             CEEEEeecCC
Q 019081          227 DVVVCCLSLN  236 (346)
Q Consensus       227 DiV~~~lPlt  236 (346)
                      |+|++++|..
T Consensus        88 DaV~I~tP~~   97 (350)
T 4had_A           88 DAVYIPLPTS   97 (350)
T ss_dssp             SEEEECSCGG
T ss_pred             CEEEEeCCCc
Confidence            9999999853

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.24  E-value=0.0039  Score=59.21  Aligned_cols=66  Identities=15%  Similarity=0.145  Sum_probs=44.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccC--------CCEEEE-EcCCCccccccccccchhhhccccccccccccC---CcCCHHH
Q 019081          154 KTVFILGFGNIGVELAKRLRPF--------GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFE  221 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~--------G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~e  221 (346)
                      -+|||||+|.||+.-++.++.+        +++|++ +|++..+..                 ....+++   .+.++++
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~-----------------~~a~~~g~~~~y~d~~e   88 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAE-----------------ARAGEFGFEKATADWRA   88 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHH-----------------HHHHHHTCSEEESCHHH
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHH-----------------HHHHHhCCCeecCCHHH
Confidence            4899999999999877766543        567654 677654321                 1112222   2478999


Q ss_pred             Hhh--cCCEEEEeecCC
Q 019081          222 FAS--KADVVVCCLSLN  236 (346)
Q Consensus       222 ll~--~aDiV~~~lPlt  236 (346)
                      +++  +.|+|++++|..
T Consensus        89 ll~~~~iDaV~IatP~~  105 (393)
T 4fb5_A           89 LIADPEVDVVSVTTPNQ  105 (393)
T ss_dssp             HHHCTTCCEEEECSCGG
T ss_pred             HhcCCCCcEEEECCChH
Confidence            996  479999999854

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.23  E-value=0.059  Score=50.70  Aligned_cols=103  Identities=18%  Similarity=0.203  Sum_probs=68.8

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .+.|.+|+++|=|  ++.++.+..+..||++|.+..|..-..+.....   .      ..+.+.+.+    ...++++.+
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~---~------~~~~a~~~G~~v~~~~d~~eav  234 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFK---R------CQEIVKETDGSVSFTSNLEEAL  234 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHH---H------HHHHHHHHCCEEEEESCHHHHH
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHH---H------HHHHHHHcCCeEEEEcCHHHHH
Confidence            4889999999996  999999999999999999987643211100000   0      000000111    246899999


Q ss_pred             hcCCEEEEeecC-------Ccc-----ccCCCCHHHHccC-CCCcEEEEcC
Q 019081          224 SKADVVVCCLSL-------NKQ-----TAGIVNKSFLSSM-KKGSLLVNIA  261 (346)
Q Consensus       224 ~~aDiV~~~lPl-------t~~-----T~~li~~~~l~~m-k~gailIN~s  261 (346)
                      +++|+|..-.=.       .++     ...-++.+.++++ |++++|.-+.
T Consensus       235 ~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          235 AGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             TTCSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ccCCEEEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence            999999873220       011     2366789999999 9999998874

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.20  E-value=0.0064  Score=53.80  Aligned_cols=103  Identities=20%  Similarity=0.175  Sum_probs=63.3

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCC
Q 019081          151 LLGKTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKAD  227 (346)
Q Consensus       151 l~g~tvgIiG-~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aD  227 (346)
                      ...+++.|.| .|.||+++++.|...| ++|++++|+..........        +  ..... ......+++++++.+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~--------~--~~~~~~Dl~d~~~~~~~~~~~D   90 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPT--------N--SQIIMGDVLNHAALKQAMQGQD   90 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCT--------T--EEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccC--------C--cEEEEecCCCHHHHHHHhcCCC
Confidence            3457999999 6999999999999999 8999999876432110000        0  00000 0012346778899999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCC-C-cEEEEcCCCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKK-G-SLLVNIARGGL  265 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~-g-ailIN~sRg~~  265 (346)
                      +|+.+.......  ......+..|++ + ..||++|....
T Consensus        91 ~vv~~a~~~~~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A           91 IVYANLTGEDLD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             EEEEECCSTTHH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             EEEEcCCCCchh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            999877643221  112334555542 2 46888886443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.19  E-value=0.0036  Score=59.72  Aligned_cols=66  Identities=18%  Similarity=0.247  Sum_probs=45.0

Q ss_pred             CeEEEEecCHHHHH-HHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCE
Q 019081          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  228 (346)
                      .+|||||+|.||+. .+..++.. +++|+ ++|++..+..   .             .. .....+.+++++++  +.|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~---~-------------~~-~~~~~~~~~~~ll~~~~~D~   70 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK---R-------------DL-PDVTVIASPEAAVQHPDVDL   70 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---H-------------HC-TTSEEESCHHHHHTCTTCSE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH---h-------------hC-CCCcEECCHHHHhcCCCCCE
Confidence            47999999999997 67767655 78876 5676543210   0             00 00012478999997  7899


Q ss_pred             EEEeecCC
Q 019081          229 VVCCLSLN  236 (346)
Q Consensus       229 V~~~lPlt  236 (346)
                      |++++|..
T Consensus        71 V~i~tp~~   78 (364)
T 3e82_A           71 VVIASPNA   78 (364)
T ss_dssp             EEECSCGG
T ss_pred             EEEeCChH
Confidence            99999853

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.19  E-value=0.0049  Score=58.18  Aligned_cols=66  Identities=17%  Similarity=0.163  Sum_probs=44.2

Q ss_pred             CeEEEEecCHHHHH-HHH-HHc-cCCCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhc--
Q 019081          154 KTVFILGFGNIGVE-LAK-RLR-PFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK--  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~-~l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~--  225 (346)
                      .++||||+|.||+. .+. .+. .-|+++. ++|++..+...                 .....+  .+.++++++++  
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~-----------------~~~~~~~~~~~~~~~ll~~~~   65 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQ-----------------APIYSHIHFTSDLDEVLNDPD   65 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGG-----------------SGGGTTCEEESCTHHHHTCTT
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHH-----------------HHhcCCCceECCHHHHhcCCC
Confidence            37999999999996 455 333 3478876 67876543210                 001111  24789999976  


Q ss_pred             CCEEEEeecCC
Q 019081          226 ADVVVCCLSLN  236 (346)
Q Consensus       226 aDiV~~~lPlt  236 (346)
                      .|+|++++|..
T Consensus        66 ~D~V~i~tp~~   76 (345)
T 3f4l_A           66 VKLVVVCTHAD   76 (345)
T ss_dssp             EEEEEECSCGG
T ss_pred             CCEEEEcCChH
Confidence            89999999854

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.19  E-value=0.0046  Score=58.50  Aligned_cols=67  Identities=13%  Similarity=0.070  Sum_probs=45.7

Q ss_pred             CeEEEEecCHHHHH-HHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc--CCE
Q 019081          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  228 (346)
                      .+|||||+|.||+. .+..++.. +++|. ++|++..+..                 ........+.++++++++  .|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~~ll~~~~vD~   70 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-----------------ADWPAIPVVSDPQMLFNDPSIDL   70 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-----------------TTCSSCCEESCHHHHHHCSSCCE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-----------------hhCCCCceECCHHHHhcCCCCCE
Confidence            48999999999997 77777655 78876 5676543210                 000000124789999976  899


Q ss_pred             EEEeecCCc
Q 019081          229 VVCCLSLNK  237 (346)
Q Consensus       229 V~~~lPlt~  237 (346)
                      |++++|...
T Consensus        71 V~i~tp~~~   79 (352)
T 3kux_A           71 IVIPTPNDT   79 (352)
T ss_dssp             EEECSCTTT
T ss_pred             EEEeCChHH
Confidence            999998543

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.18  E-value=0.0058  Score=57.32  Aligned_cols=66  Identities=8%  Similarity=0.162  Sum_probs=46.5

Q ss_pred             CeEEEEecCHHHH-HHHHHHccCCCEE-EEEcCCCccccccccccchhhhcccccccccccc-C--CcCCHHHHhh--cC
Q 019081          154 KTVFILGFGNIGV-ELAKRLRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFAS--KA  226 (346)
Q Consensus       154 ~tvgIiG~G~IG~-~vA~~l~~~G~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~--~a  226 (346)
                      .+|||||+|.+|. .+++.++..|+++ .++|++..+..                 .....+ +  .+.+++++++  +.
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~ll~~~~~   67 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRA-----------------KFTSLFPSVPFAASAEQLITDASI   67 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCH-----------------HHHHHSTTCCBCSCHHHHHTCTTC
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHH-----------------HHHHhcCCCcccCCHHHHhhCCCC
Confidence            4899999999996 6777776668996 56787654421                 111111 1  3578999996  68


Q ss_pred             CEEEEeecCC
Q 019081          227 DVVVCCLSLN  236 (346)
Q Consensus       227 DiV~~~lPlt  236 (346)
                      |+|++++|..
T Consensus        68 D~V~i~tp~~   77 (336)
T 2p2s_A           68 DLIACAVIPC   77 (336)
T ss_dssp             CEEEECSCGG
T ss_pred             CEEEEeCChh
Confidence            9999999843

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.17  E-value=0.0025  Score=62.86  Aligned_cols=114  Identities=12%  Similarity=0.078  Sum_probs=67.4

Q ss_pred             CCCeEEEEecCHH--HHHHHHHHcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc
Q 019081          152 LGKTVFILGFGNI--GVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (346)
Q Consensus       152 ~g~tvgIiG~G~I--G~~vA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (346)
                      ...+|+|||.|.+  |..+++.+..    .| +|..||+..........    .  ... +...........++++.++.
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~----~--~~~-l~~~~~~I~~TtD~~eAl~d   75 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEV----I--GNH-SGNGRWRYEAVSTLKKALSA   75 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHH----H--HTT-STTSCEEEEEESSHHHHHTT
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHH----H--HHH-HhccCCeEEEECCHHHHhcC
Confidence            3569999999998  5778776642    46 99999987532110000    0  000 00000011124689999999


Q ss_pred             CCEEEEeecCC-----------ccccCCCCH------------------------HHHccCCCCcEEEEcCCCCCCCHHH
Q 019081          226 ADVVVCCLSLN-----------KQTAGIVNK------------------------SFLSSMKKGSLLVNIARGGLLDYEA  270 (346)
Q Consensus       226 aDiV~~~lPlt-----------~~T~~li~~------------------------~~l~~mk~gailIN~sRg~~vd~~a  270 (346)
                      ||+|+++++..           |.-.|+...                        +.+....|++++||++-.-=+-+.+
T Consensus        76 ADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~  155 (450)
T 3fef_A           76 ADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRV  155 (450)
T ss_dssp             CSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHH
T ss_pred             CCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHH
Confidence            99999999642           334444222                        2334446899999998655444444


Q ss_pred             HHH
Q 019081          271 IAH  273 (346)
Q Consensus       271 L~~  273 (346)
                      +.+
T Consensus       156 ~~k  158 (450)
T 3fef_A          156 LYK  158 (450)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.17  E-value=0.004  Score=57.97  Aligned_cols=104  Identities=18%  Similarity=0.181  Sum_probs=59.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccc-cccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      ..+|+|||.|.||..+|..|...|.  +|..+|++...... .........+.     ... ......+. +.++.||+|
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~-----~~~-~v~~~~~~-~~~~~aD~V   79 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY-----PTV-SIDGSDDP-EICRDADMV   79 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGS-----TTC-EEEEESCG-GGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhc-----CCe-EEEeCCCH-HHhCCCCEE
Confidence            3589999999999999999988888  99999986422110 00000000000     000 00001233 467899999


Q ss_pred             EEeecCCccccCCCC--------------HHHHccCCCCcEEEEcCCCC
Q 019081          230 VCCLSLNKQTAGIVN--------------KSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       230 ~~~lPlt~~T~~li~--------------~~~l~~mk~gailIN~sRg~  264 (346)
                      +++++. +...+.-.              .+.++...+++++|+++-|-
T Consensus        80 ii~v~~-~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           80 VITAGP-RQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             EECCCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             EECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            999963 22222110              11222236789999886553

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.16  E-value=0.0078  Score=54.72  Aligned_cols=97  Identities=27%  Similarity=0.303  Sum_probs=64.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      ...+|+++|+|+||+.+++.  . ++++. +|+   .+.                 .++  ......+++++++++|+|+
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~-----------------gel--gv~a~~d~d~lla~pD~VV   65 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RIS-----------------KDI--PGVVRLDEFQVPSDVSTVV   65 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSC-----------------CCC--SSSEECSSCCCCTTCCEEE
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe---ccc-----------------ccc--CceeeCCHHHHhhCCCEEE
Confidence            46799999999999999998  4 88764 455   111                 011  0012356888888899998


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH---HHHHHHHHhC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECG  278 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g  278 (346)
                      =|.+. +    -+.+....-++.|.=+|-+|-|.+.|.   +.|.++-++|
T Consensus        66 e~A~~-~----av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~g  111 (253)
T 1j5p_A           66 ECASP-E----AVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNS  111 (253)
T ss_dssp             ECSCH-H----HHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTC
T ss_pred             ECCCH-H----HHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHC
Confidence            87642 1    223334455888999999998888876   4455555554

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.16  E-value=0.0049  Score=58.22  Aligned_cols=106  Identities=18%  Similarity=0.156  Sum_probs=60.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      .+++|+|||.|.||..+|..+...|.  ++..+|++.......... .    .+.  ...........+..+.+++||+|
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~D-L----~~~--~~~~~~~~i~~~~~~a~~~aDiV   80 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAID-L----EDA--LPFTSPKKIYSAEYSDAKDADLV   80 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHH-H----HTT--GGGSCCCEEEECCGGGGTTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhh-H----hhh--hhhcCCcEEEECcHHHhcCCCEE
Confidence            46799999999999999999987676  899999864321100000 0    000  00000000012335678999999


Q ss_pred             EEeecCCccccC-----CC--C-------HHHHccCCCCcEEEEcCCCCCCC
Q 019081          230 VCCLSLNKQTAG-----IV--N-------KSFLSSMKKGSLLVNIARGGLLD  267 (346)
Q Consensus       230 ~~~lPlt~~T~~-----li--~-------~~~l~~mk~gailIN~sRg~~vd  267 (346)
                      +++... +...|     ++  |       .+.+....|++++++++  ..+|
T Consensus        81 vi~ag~-~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvd  129 (326)
T 3vku_A           81 VITAGA-PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVD  129 (326)
T ss_dssp             EECCCC-C----------------CHHHHHHHHHTTTCCSEEEECS--SSHH
T ss_pred             EECCCC-CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchH
Confidence            998653 22222     22  1       12344556899999996  4444

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=96.15  E-value=0.0052  Score=57.69  Aligned_cols=123  Identities=16%  Similarity=0.230  Sum_probs=66.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccccc-CCcCCHHHHhhcCCEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~  230 (346)
                      .+|+|||.|.+|..++..+...|.  +|..+|.+..+.......     ..+. . ...... ....+ .+.+++||+|+
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~d-----l~~~-~-~~~~~~~i~~~~-~~a~~~aDvVi   79 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD-----INHG-L-PFMGQMSLYAGD-YSDVKDCDVIV   79 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH-----HTTS-C-CCTTCEEEC--C-GGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHH-----HHHh-H-HhcCCeEEEECC-HHHhCCCCEEE
Confidence            589999999999999999987777  999999875432110000     0000 0 000000 01123 55689999999


Q ss_pred             EeecCCccccCCC-------C----H---HHHccCCCCcEEEEcCCCCCCC--HHHHHHH--HHhCCCeEE--EEec
Q 019081          231 CCLSLNKQTAGIV-------N----K---SFLSSMKKGSLLVNIARGGLLD--YEAIAHY--LECGHLGGL--GIDV  287 (346)
Q Consensus       231 ~~lPlt~~T~~li-------~----~---~~l~~mk~gailIN~sRg~~vd--~~aL~~a--L~~g~i~ga--~lDV  287 (346)
                      ++.+. +...++-       |    .   +.+....|++++|+++  ..+|  ...+.+.  +...++-|.  -||+
T Consensus        80 i~~g~-p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~~~~~~k~s~~p~~rviG~gt~Ld~  153 (318)
T 1y6j_A           80 VTAGA-NRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS--NPVDIITYMIQKWSGLPVGKVIGSGTVLDS  153 (318)
T ss_dssp             ECCCC-------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS--SSHHHHHHHHHHHHTCCTTTEEECTTHHHH
T ss_pred             EcCCC-CCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHcCCCHHHEeccCCchHH
Confidence            99874 4333331       0    1   1233336899999974  4444  3333333  334477666  2573

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.14  E-value=0.0078  Score=56.22  Aligned_cols=102  Identities=16%  Similarity=0.184  Sum_probs=57.7

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|||.|.+|..+|..+...|. +|..+|.+.........   .+  .+........... ...+. +.+++||+|++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~---dl--~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~   76 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKAL---DL--YEASPIEGFDVRVTGTNNY-ADTANSDVIVV   76 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHH---HH--HTTHHHHTCCCCEEEESCG-GGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHH---hH--HHhHhhcCCCeEEEECCCH-HHHCCCCEEEE
Confidence            589999999999999999988886 89999987533211000   00  0000000000000 12466 67899999999


Q ss_pred             eecCCccccCCC-------C----H---HHHccCCCCcEEEEcCC
Q 019081          232 CLSLNKQTAGIV-------N----K---SFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       232 ~lPlt~~T~~li-------~----~---~~l~~mk~gailIN~sR  262 (346)
                      +.+. +...++-       |    +   +.+....|++++|+++-
T Consensus        77 a~g~-p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  120 (309)
T 1ur5_A           77 TSGA-PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  120 (309)
T ss_dssp             CCCC---------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred             cCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence            9863 3333321       1    1   12333458999999743

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.12  E-value=0.0033  Score=61.53  Aligned_cols=66  Identities=17%  Similarity=0.134  Sum_probs=45.7

Q ss_pred             CeEEEEecCHHHH-HHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC-------CcCCHHHHh
Q 019081          154 KTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-------CHEDIFEFA  223 (346)
Q Consensus       154 ~tvgIiG~G~IG~-~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~ell  223 (346)
                      .+|||||+|.||+ .+++.++.. +++++ ++|++..+..                 .....++       .+.++++++
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~~~~~ll  146 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAK-----------------IVAAEYGVDPRKIYDYSNFDKIA  146 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHH-----------------HHHHHTTCCGGGEECSSSGGGGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHH-----------------HHHHHhCCCcccccccCCHHHHh
Confidence            4899999999997 899888765 67764 6777643211                 0111111       246888998


Q ss_pred             h--cCCEEEEeecCC
Q 019081          224 S--KADVVVCCLSLN  236 (346)
Q Consensus       224 ~--~aDiV~~~lPlt  236 (346)
                      +  +.|+|++++|..
T Consensus       147 ~~~~vD~V~iatp~~  161 (433)
T 1h6d_A          147 KDPKIDAVYIILPNS  161 (433)
T ss_dssp             GCTTCCEEEECSCGG
T ss_pred             cCCCCCEEEEcCCch
Confidence            7  799999999853

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.11  E-value=0.0056  Score=54.20  Aligned_cols=66  Identities=9%  Similarity=0.060  Sum_probs=43.5

Q ss_pred             CeEEEEecCHHHHHHHHH--HccCCCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-cCCEE
Q 019081          154 KTVFILGFGNIGVELAKR--LRPFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-KADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~--l~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  229 (346)
                      ++++|||+|.+|+.+++.  ... |+++++ +|.++.......              ....-. ...+++++++ +.|+|
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i--------------~gv~V~-~~~dl~ell~~~ID~V  144 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPV--------------RGGVIE-HVDLLPQRVPGRIEIA  144 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEE--------------TTEEEE-EGGGHHHHSTTTCCEE
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhh--------------cCCeee-cHHhHHHHHHcCCCEE
Confidence            589999999999999995  345 888664 676544311000              000000 2457888886 58999


Q ss_pred             EEeecC
Q 019081          230 VCCLSL  235 (346)
Q Consensus       230 ~~~lPl  235 (346)
                      ++++|.
T Consensus       145 iIA~Ps  150 (211)
T 2dt5_A          145 LLTVPR  150 (211)
T ss_dssp             EECSCH
T ss_pred             EEeCCc
Confidence            999985

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.09  E-value=0.01  Score=50.52  Aligned_cols=74  Identities=16%  Similarity=0.147  Sum_probs=49.6

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEE
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  230 (346)
                      ++++.|+|. |.||+.+++.|...|++|++++|+.........        .+  ..... ......++.++++.+|+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~--------~~--~~~~~~D~~~~~~~~~~~~~~d~vi   72 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP--------RP--AHVVVGDVLQAADVDKTVAGQDAVI   72 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSC--------CC--SEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccC--------Cc--eEEEEecCCCHHHHHHHHcCCCEEE
Confidence            478999998 999999999999999999999987543211000        00  00000 0012345678888999999


Q ss_pred             EeecCC
Q 019081          231 CCLSLN  236 (346)
Q Consensus       231 ~~lPlt  236 (346)
                      .+....
T Consensus        73 ~~a~~~   78 (206)
T 1hdo_A           73 VLLGTR   78 (206)
T ss_dssp             ECCCCT
T ss_pred             ECccCC
Confidence            887644

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.08  E-value=0.0043  Score=58.51  Aligned_cols=92  Identities=16%  Similarity=0.166  Sum_probs=59.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .|++|.|+|.|.||...++.++.+|++|++.+++..+......  .           .++..  ..+.+++.+..|+|+-
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~--l-----------Ga~~v--~~~~~~~~~~~D~vid  240 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS--M-----------GVKHF--YTDPKQCKEELDFIIS  240 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH--T-----------TCSEE--ESSGGGCCSCEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh--c-----------CCCee--cCCHHHHhcCCCEEEE
Confidence            5789999999999999999999999999999987654211000  0           00000  0122222236788888


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      ++....     .-...++.++++..++.++..
T Consensus       241 ~~g~~~-----~~~~~~~~l~~~G~iv~~G~~  267 (348)
T 3two_A          241 TIPTHY-----DLKDYLKLLTYNGDLALVGLP  267 (348)
T ss_dssp             CCCSCC-----CHHHHHTTEEEEEEEEECCCC
T ss_pred             CCCcHH-----HHHHHHHHHhcCCEEEEECCC
Confidence            776431     124566778888888887643

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.08  E-value=0.0078  Score=56.49  Aligned_cols=126  Identities=15%  Similarity=0.191  Sum_probs=68.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .+|+|+|.|.||..+|..+...|+  +|..+|++.................     ..........+..+.+++||+|++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~-----~~~~~~v~~~~~~~a~~~aDvVii   75 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPI-----HGFDTRVTGTNDYGPTEDSDVCII   75 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHH-----HTCCCEEEEESSSGGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccc-----cCCCcEEEECCCHHHhCCCCEEEE
Confidence            379999999999999999877676  8999998764311000000000000     000000001234577899999999


Q ss_pred             eecCCccccCCC-------CH-------HHHccCCCCcEEEEcCCCCCCCH--HHHHHH--HHhCCCeEEE--Eec
Q 019081          232 CLSLNKQTAGIV-------NK-------SFLSSMKKGSLLVNIARGGLLDY--EAIAHY--LECGHLGGLG--IDV  287 (346)
Q Consensus       232 ~lPlt~~T~~li-------~~-------~~l~~mk~gailIN~sRg~~vd~--~aL~~a--L~~g~i~ga~--lDV  287 (346)
                      +.+. +...++-       |.       +.+....|++++++++-  .+|.  ..+.+.  +...++.|.+  ||.
T Consensus        76 ~ag~-~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN--Pvd~~t~~~~k~~g~p~~rviG~~t~LD~  148 (314)
T 3nep_X           76 TAGL-PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN--PLDVMTYVAYEASGFPTNRVMGMAGVLDT  148 (314)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS--SHHHHHHHHHHHHTCCGGGEEECCHHHHH
T ss_pred             CCCC-CCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC--chhHHHHHHHHhcCCChHHEEeecCchHH
Confidence            8763 3333332       11       23445578999999974  4443  333332  1134666665  553

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.08  E-value=0.0031  Score=59.93  Aligned_cols=106  Identities=12%  Similarity=0.203  Sum_probs=63.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC------CcCCHHHHhh-
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG------CHEDIFEFAS-  224 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~ell~-  224 (346)
                      .+|||||+|.||+.+++.+... +++++ ++|++..+..                 .....++      ...+++++++ 
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~~~~ll~~   69 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAK-----------------AFATANNYPESTKIHGSYESLLED   69 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHH-----------------HHHHHTTCCTTCEEESSHHHHHHC
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHH-----------------HHHHHhCCCCCCeeeCCHHHHhcC
Confidence            4899999999999999988764 67764 6777543211                 0111111      2468999996 


Q ss_pred             -cCCEEEEeecCCccccCCCCHHHHccCCCCc-EEEEcC-CCCCCCHHHHHHHHHhCCCe
Q 019081          225 -KADVVVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNIA-RGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       225 -~aDiV~~~lPlt~~T~~li~~~~l~~mk~ga-ilIN~s-Rg~~vd~~aL~~aL~~g~i~  281 (346)
                       ++|+|++++|....     -.-....++.|. +++.-- --.+-+.++|.++.++..+.
T Consensus        70 ~~~D~V~i~tp~~~h-----~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           70 PEIDALYVPLPTSLH-----VEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             TTCCEEEECCCGGGH-----HHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             CCCCEEEEcCChHHH-----HHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence             59999999984321     112233456665 444321 11122346777777765543

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=96.06  E-value=0.0055  Score=58.61  Aligned_cols=134  Identities=17%  Similarity=0.185  Sum_probs=81.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      -.++-|+|.|.+|+++++.++.+|++|+++|++..-.                     .        .+-++.+|-++..
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~---------------------~--------~~~fp~a~~v~~~  249 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQC---------------------E--------KHFFPDADEIIVD  249 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGG---------------------C--------GGGCTTCSEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcccc---------------------c--------cccCCCceEEecC
Confidence            3479999999999999999999999999999764321                     0        0112345655443


Q ss_pred             ecCCccccCCCCHHHHcc--CCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEe--------cCCCCCCCCCCCCCCC
Q 019081          233 LSLNKQTAGIVNKSFLSS--MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID--------VAWTEPFDPNDPILKF  302 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~--mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD--------V~~~EPl~~~~pL~~~  302 (346)
                      .|          .+.+..  +.+++++|=+.++.-.|...|..+|++ ...+.|+=        .++..-        ..
T Consensus       250 ~p----------~~~~~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~iGSr~R~~rl~~~g~--------~~  310 (362)
T 3on5_A          250 FP----------ADFLRKFLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIGILGSKERTRRLLQNRK--------PP  310 (362)
T ss_dssp             CH----------HHHHHHSCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEEESSCHHHHHHHHTSCC--------CC
T ss_pred             CH----------HHHHhhcCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEEEeCCHHHHHHHHhcCC--------cH
Confidence            33          122333  566777777778887888888888876 44444431        111110        01


Q ss_pred             CceEEcc---CCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 019081          303 KNVLITP---HVGGVTEHSYRSMAKVVGDVALQLHAGTP  338 (346)
Q Consensus       303 ~nviiTP---H~a~~t~~~~~~~~~~~~~ni~~~~~g~~  338 (346)
                      .+ +-+|   -+++-|++.   ++-.++-+|.+...|++
T Consensus       311 ~r-i~~PIGL~Iga~tP~E---IAvSI~AEiia~~~~~~  345 (362)
T 3on5_A          311 DH-LYSPVGLSIDAQGPEE---IAISIVAQLIQLIRSRK  345 (362)
T ss_dssp             TT-EESSCSCCSCCCSHHH---HHHHHHHHHHHHHHHSC
T ss_pred             hh-eECCCCCCCCCCCHHH---HHHHHHHHHHHHHhCCC
Confidence            12 4455   477888764   44455555556555554

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.06  E-value=0.0046  Score=58.79  Aligned_cols=66  Identities=15%  Similarity=0.102  Sum_probs=44.8

Q ss_pred             CeEEEEecCHHHHH-HHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc--CCE
Q 019081          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  228 (346)
                      .+|||||+|.||+. .+..++.. +++|+ ++|++..+.   .              ........+.++++++++  .|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~--------------~~~~~~~~~~~~~~ll~~~~vD~   68 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELS---K--------------ERYPQASIVRSFKELTEDPEIDL   68 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGG---G--------------TTCTTSEEESCSHHHHTCTTCCE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---H--------------HhCCCCceECCHHHHhcCCCCCE
Confidence            48999999999997 67766654 78876 567664321   0              000000124789999976  899


Q ss_pred             EEEeecCC
Q 019081          229 VVCCLSLN  236 (346)
Q Consensus       229 V~~~lPlt  236 (346)
                      |++++|..
T Consensus        69 V~i~tp~~   76 (362)
T 3fhl_A           69 IVVNTPDN   76 (362)
T ss_dssp             EEECSCGG
T ss_pred             EEEeCChH
Confidence            99999853

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=96.05  E-value=0.064  Score=52.57  Aligned_cols=138  Identities=17%  Similarity=0.202  Sum_probs=95.7

Q ss_pred             CCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC
Q 019081           98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV  177 (346)
Q Consensus        98 ~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~  177 (346)
                      ..|+|.|.- .     ..+|=-+++.+++.+|-.                ++.|.+.++.|.|.|..|-.+|+.+...|.
T Consensus       186 ~~ipvFnDD-~-----qGTA~V~lAgllnAlki~----------------gk~l~d~riV~~GAGaAGigia~ll~~~G~  243 (487)
T 3nv9_A          186 CDIPVWHDD-Q-----QGTASVTLAGLLNALKLV----------------KKDIHECRMVFIGAGSSNTTCLRLIVTAGA  243 (487)
T ss_dssp             CSSCEEETT-T-----HHHHHHHHHHHHHHHHHH----------------TCCGGGCCEEEECCSHHHHHHHHHHHHTTC
T ss_pred             ccCCccccc-c-----chHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECCCHHHHHHHHHHHHcCC
Confidence            489999873 2     456777788888887642                578999999999999999999999999998


Q ss_pred             ---EEEEEcCCCccccccccccch---hhhcccccccccccc--CCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHc
Q 019081          178 ---KIIATKRSWASHSQVSCQSSA---LAVKNGIIDDLVDEK--GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS  249 (346)
Q Consensus       178 ---~V~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~  249 (346)
                         +++.+|+..--... ......   ++.+.    +++...  ....+|.|+++.+|+++-.-  +. ..++++++.++
T Consensus       244 ~~~~i~l~D~~Gli~~~-R~~l~~~~~~~~k~----~~A~~~n~~~~~~L~eav~~adVlIG~S--~~-~pg~ft~e~V~  315 (487)
T 3nv9_A          244 DPKKIVMFDSKGSLHNG-REDIKKDTRFYRKW----EICETTNPSKFGSIAEACVGADVLISLS--TP-GPGVVKAEWIK  315 (487)
T ss_dssp             CGGGEEEEETTEECCTT-CHHHHHCGGGHHHH----HHHHHSCTTCCCSHHHHHTTCSEEEECC--CS-SCCCCCHHHHH
T ss_pred             CcccEEEEeccccccCC-cchhhhhcccHHHH----HHHHhcccccCCCHHHHHhcCCEEEEec--cc-CCCCCCHHHHH
Confidence               79999986311000 000000   00000    011111  02358999999999776542  11 25799999999


Q ss_pred             cCCCCcEEEEcCCCCC
Q 019081          250 SMKKGSLLVNIARGGL  265 (346)
Q Consensus       250 ~mk~gailIN~sRg~~  265 (346)
                      .|.+.+++.=.|....
T Consensus       316 ~Ma~~PIIFaLSNPtp  331 (487)
T 3nv9_A          316 SMGEKPIVFCCANPVP  331 (487)
T ss_dssp             TSCSSCEEEECCSSSC
T ss_pred             hhcCCCEEEECCCCCc
Confidence            9999999999997664

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.04  E-value=0.0094  Score=56.10  Aligned_cols=124  Identities=17%  Similarity=0.187  Sum_probs=69.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCC-cCCHHHHhhcCCEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC-HEDIFEFASKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiV  229 (346)
                      ..++|+|||.|.+|..+|..+...|+ +|..+|++.................     ........ ..+ .+.+++||+|
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~-----~~~~~~v~~t~d-~~a~~~aDvV   77 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPI-----EGVDFKVRGTND-YKDLENSDVV   77 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHH-----HTCCCCEEEESC-GGGGTTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhh-----cCCCcEEEEcCC-HHHHCCCCEE
Confidence            35799999999999999999876666 9999998764321100000000000     00000001 123 4688999999


Q ss_pred             EEeecCCccccCCC-------CH-------HHHccCCCCcEEEEcCCCCCCCH--HHHHHH--HHhCCCeEEE
Q 019081          230 VCCLSLNKQTAGIV-------NK-------SFLSSMKKGSLLVNIARGGLLDY--EAIAHY--LECGHLGGLG  284 (346)
Q Consensus       230 ~~~lPlt~~T~~li-------~~-------~~l~~mk~gailIN~sRg~~vd~--~aL~~a--L~~g~i~ga~  284 (346)
                      +++.+ .+...|+-       |.       +.+....|++++|+++  ..+|.  ..+.+.  +...++.|.+
T Consensus        78 Ii~ag-~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~t~~~~k~sg~p~~rviG~~  147 (321)
T 3p7m_A           78 IVTAG-VPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIMVNMLQKFSGVPDNKIVGMA  147 (321)
T ss_dssp             EECCS-CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred             EEcCC-cCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHHHHHHHhcCCCHHHEEeec
Confidence            99875 33333432       11       1233335899999995  45543  333332  2224666665

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.03  E-value=0.0087  Score=54.99  Aligned_cols=38  Identities=24%  Similarity=0.390  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .++.||++.|+| .|.||+++++.|...|++|++++|+.
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            357889999999 99999999999999999999999864

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.03  E-value=0.005  Score=58.15  Aligned_cols=102  Identities=17%  Similarity=0.156  Sum_probs=60.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccc-cccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      .++|+|||.|.||..+|..+...|.  +|..+|++........ +....++.       .........+..+.+++||+|
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~-------~~~~v~i~~~~~~a~~~aDvV   77 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAF-------APQPVKTSYGTYEDCKDADIV   77 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGG-------SSSCCEEEEECGGGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcccc-------ccCCeEEEeCcHHHhCCCCEE
Confidence            5689999999999999999987776  8999998643211100 00000000       000000011223578899999


Q ss_pred             EEeecCCccccCCC-------CH-------HHHccCCCCcEEEEcCC
Q 019081          230 VCCLSLNKQTAGIV-------NK-------SFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       230 ~~~lPlt~~T~~li-------~~-------~~l~~mk~gailIN~sR  262 (346)
                      +++.+ ++...++-       |.       +.+....|++++++++-
T Consensus        78 vi~ag-~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           78 CICAG-ANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             EECCS-CCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EEecc-cCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            99876 34433431       11       23344568999999974

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.99  E-value=0.0093  Score=56.23  Aligned_cols=128  Identities=13%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      ...++|+|||.|.+|..+|..+...|+ +|..+|++..................    ..........+. +.+++||+|
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~----~~~~~v~~t~d~-~a~~~aDiV   79 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVD----GFDAKFTGANDY-AAIEGADVV   79 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHH----TCCCCEEEESSG-GGGTTCSEE
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhc----CCCCEEEEeCCH-HHHCCCCEE
Confidence            456799999999999999999987777 99999987643210000000000000    000000012344 788999999


Q ss_pred             EEeecCCccccCC-----C--CH-------HHHccCCCCcEEEEcCCCCCCCHHHHHHH--HHhCCCeEEE
Q 019081          230 VCCLSLNKQTAGI-----V--NK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG  284 (346)
Q Consensus       230 ~~~lPlt~~T~~l-----i--~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~  284 (346)
                      +++.+. +...++     +  |.       +.+....|++++|+++-.-=+....+.+.  +...++.|.+
T Consensus        80 Iiaag~-p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~  149 (324)
T 3gvi_A           80 IVTAGV-PRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWALQKFSGLPAHKVVGMA  149 (324)
T ss_dssp             EECCSC-CCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred             EEccCc-CCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeec
Confidence            998763 333333     1  11       12333358999999974322223333332  1123566655

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.98  E-value=0.0021  Score=61.12  Aligned_cols=95  Identities=16%  Similarity=0.297  Sum_probs=61.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC---ccccccccccchhhhccccccccccccCCcCCHHHHh---
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW---ASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA---  223 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---  223 (346)
                      .+.|++|.|+|.|.||..+++.++.+|++|++.+++.   .+.... .. .+        .+..+  ..  ++.+.+   
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-~~-~g--------a~~v~--~~--~~~~~~~~~  243 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVI-EE-TK--------TNYYN--SS--NGYDKLKDS  243 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHH-HH-HT--------CEEEE--CT--TCSHHHHHH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHH-HH-hC--------Cceec--hH--HHHHHHHHh
Confidence            5669999999999999999999999999999999865   321100 00 00        00011  00  111111   


Q ss_pred             -hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          224 -SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       224 -~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                       ...|+|+.++......   + ...++.|+++..+|+++-
T Consensus       244 ~~~~d~vid~~g~~~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          244 VGKFDVIIDATGADVNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             HCCEEEEEECCCCCTHH---H-HHHGGGEEEEEEEEECSC
T ss_pred             CCCCCEEEECCCChHHH---H-HHHHHHHhcCCEEEEEec
Confidence             3579999888643221   0 456778899999999864

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.98  E-value=0.0096  Score=55.33  Aligned_cols=124  Identities=15%  Similarity=0.123  Sum_probs=71.6

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      +|+|+|.|.+|..+|..+...|.  +|..+|++............... .  ... .........+ .+.+++||+|+++
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~-~--~~~-~~~~i~~t~d-~~a~~~aDiVVia   76 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAA-A--GID-KYPKIVGGAD-YSLLKGSEIIVVT   76 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHH-H--TTT-CCCEEEEESC-GGGGTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhh-h--hcC-CCCEEEEeCC-HHHhCCCCEEEEC
Confidence            79999999999999999987777  99999987543110000000000 0  000 0000001235 7889999999998


Q ss_pred             ecCCccccCCC-------CH-------HHHccCCCCcEEEEcCCCCCCCHHHHHHH----HHhCCCeEEE--Ee
Q 019081          233 LSLNKQTAGIV-------NK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHY----LECGHLGGLG--ID  286 (346)
Q Consensus       233 lPlt~~T~~li-------~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~a----L~~g~i~ga~--lD  286 (346)
                      .+. +...++-       |.       +.+....|++++++++  ..+|.-..+-.    +...++.|.+  ||
T Consensus        77 ag~-~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           77 AGL-ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCC-CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence            763 3333331       11       2345567899999997  55554332221    1134677764  66

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.98  E-value=0.0037  Score=58.73  Aligned_cols=125  Identities=18%  Similarity=0.228  Sum_probs=70.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccc-cccCCcCCHHHHhhcCCEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV  229 (346)
                      ..+|+|||.|.+|..++..+...|.  +|..+|.+..+.......     ..+.  .... .......+..+.++.||+|
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~d-----l~~~--~~~~~~~~~v~~~~~~a~~~aDvV   78 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMD-----LKHA--TPYSPTTVRVKAGEYSDCHDADLV   78 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHH-----HHHH--GGGSSSCCEEEECCGGGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhh-----HHhh--hhhcCCCeEEEeCCHHHhCCCCEE
Confidence            4699999999999999998876664  899999864321100000     0000  0000 0000011346678999999


Q ss_pred             EEeecCCccccCCC-------C-------HHHHccCCCCcEEEEcCCCCCCC--HHHHHHH--HHhCCCeEEE--Eec
Q 019081          230 VCCLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIARGGLLD--YEAIAHY--LECGHLGGLG--IDV  287 (346)
Q Consensus       230 ~~~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~sRg~~vd--~~aL~~a--L~~g~i~ga~--lDV  287 (346)
                      +++.+. +...+.-       |       .+.+....|++++|+++  ..+|  ...+.+.  +...++-|.+  ||+
T Consensus        79 vi~ag~-~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t~~~~k~~~~p~~rviG~gt~lD~  153 (317)
T 3d0o_A           79 VICAGA-AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDILAYATWKFSGLPKERVIGSGTILDS  153 (317)
T ss_dssp             EECCCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEECTTHHHH
T ss_pred             EECCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHhCCCHHHEEecCccccH
Confidence            999874 3333321       1       12334447899999986  4444  3333333  3334676662  563

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=95.96  E-value=0.086  Score=49.82  Aligned_cols=103  Identities=13%  Similarity=0.091  Sum_probs=67.4

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  224 (346)
                      .+.|.+|++||= +++.++++..+..||++|.+..|..-..+.....   .      ....+...+    ...++++.++
T Consensus       176 ~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~---~------~~~~a~~~G~~v~~~~d~~eav~  246 (340)
T 4ep1_A          176 TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVK---K------ALAIAKETGAEIEILHNPELAVN  246 (340)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHH---H------HHHHHHHHCCCEEEESCHHHHHT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHH---H------HHHHHHHcCCeEEEECCHHHHhC
Confidence            388999999996 5788888889999999999987643221110000   0      000001111    2368999999


Q ss_pred             cCCEEEEeecCCc----c-------ccCCCCHHHHccCCCCcEEEEcC
Q 019081          225 KADVVVCCLSLNK----Q-------TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       225 ~aDiV~~~lPlt~----~-------T~~li~~~~l~~mk~gailIN~s  261 (346)
                      ++|+|..-.=-..    +       ...-++.+.++.+|++++|.-+.
T Consensus       247 ~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          247 EADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             TCSEEEECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             CCCEEEecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence            9999977432110    0       13567999999999999998875

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=95.95  E-value=0.073  Score=49.98  Aligned_cols=102  Identities=18%  Similarity=0.179  Sum_probs=66.4

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  224 (346)
                      .+.|.+|++||=| ++.++.+..+..||++|.+..|..-..+.....   .      ....+...+    ...++++.++
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~---~------~~~~a~~~G~~~~~~~d~~eav~  222 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTK---L------AEQYAKENGTKLLLTNDPLEAAH  222 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHH---H------HHHHHHHHTCCEEEESCHHHHHT
T ss_pred             CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHH---H------HHHHHHHcCCeEEEEECHHHHhc
Confidence            4889999999985 588888888889999999987643221110000   0      000000111    2468999999


Q ss_pred             cCCEEEEeecC--C-c-c--------ccCCCCHHHHccCCCCcEEEEc
Q 019081          225 KADVVVCCLSL--N-K-Q--------TAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       225 ~aDiV~~~lPl--t-~-~--------T~~li~~~~l~~mk~gailIN~  260 (346)
                      ++|+|..-+-.  . + +        ...-++.+.++++|++++|.-+
T Consensus       223 ~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~  270 (321)
T 1oth_A          223 GGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHC  270 (321)
T ss_dssp             TCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEEC
T ss_pred             cCCEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECC
Confidence            99999984311  1 1 1        1256788888888999888776

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=95.95  E-value=0.0046  Score=58.77  Aligned_cols=66  Identities=15%  Similarity=0.130  Sum_probs=45.0

Q ss_pred             CeEEEEecCHHHHH-HHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCE
Q 019081          154 KTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  228 (346)
                      .++||||+|.||+. .+..++.. +++|+ ++|++..+.   .              ........+.+++++++  +.|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~--------------~~~~~~~~~~~~~~ll~~~~vD~   68 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV---K--------------RDFPDAEVVHELEEITNDPAIEL   68 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH---H--------------HHCTTSEEESSTHHHHTCTTCCE
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---H--------------hhCCCCceECCHHHHhcCCCCCE
Confidence            48999999999997 67777665 78876 556654220   0              00000012468999997  7899


Q ss_pred             EEEeecCC
Q 019081          229 VVCCLSLN  236 (346)
Q Consensus       229 V~~~lPlt  236 (346)
                      |++++|..
T Consensus        69 V~i~tp~~   76 (358)
T 3gdo_A           69 VIVTTPSG   76 (358)
T ss_dssp             EEECSCTT
T ss_pred             EEEcCCcH
Confidence            99999864

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.95  E-value=0.003  Score=59.02  Aligned_cols=122  Identities=11%  Similarity=0.161  Sum_probs=66.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      .++|+|||.|.+|..+|..+...|.  +|..+|.+... .........+         .........++ +.+++||+|+
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~-~g~a~dl~~~---------~~~~i~~t~d~-~~l~~aD~Vi   82 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGT-KGATMDLEIF---------NLPNVEISKDL-SASAHSKVVI   82 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHHH---------TCTTEEEESCG-GGGTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcch-HHHHHHHhhh---------cCCCeEEeCCH-HHHCCCCEEE
Confidence            3699999999999999998877777  99999987531 1111000000         00000012466 6689999999


Q ss_pred             EeecCCccccCCC-----------CHH---HHccCCCCcEEEEcCCCCCCCHHHHHHH--HHhCCCeEE--EEec
Q 019081          231 CCLSLNKQTAGIV-----------NKS---FLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGL--GIDV  287 (346)
Q Consensus       231 ~~lPlt~~T~~li-----------~~~---~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga--~lDV  287 (346)
                      ++... + ..++-           -++   .+....|++++|+++-..=+....+.+.  +...++.|.  -||+
T Consensus        83 ~aag~-~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~gt~Ld~  155 (303)
T 2i6t_A           83 FTVNS-L-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDS  155 (303)
T ss_dssp             ECCCC------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHH
T ss_pred             EcCCC-C-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCCCCCchH
Confidence            98733 1 11210           111   2233348999999876322222222222  113466665  3464

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.93  E-value=0.0064  Score=57.67  Aligned_cols=97  Identities=25%  Similarity=0.239  Sum_probs=61.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcC-CHHHHh-hcCCEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE-DIFEFA-SKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell-~~aDiV  229 (346)
                      .|++|.|+|.|.||...++.++.+|++|++++++..+......  .+       .+...+.  ... ++.+.+ ...|+|
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~--lG-------a~~v~~~--~~~~~~~~~~~~~~D~v  247 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK--MG-------ADHYIAT--LEEGDWGEKYFDTFDLI  247 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH--HT-------CSEEEEG--GGTSCHHHHSCSCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH--cC-------CCEEEcC--cCchHHHHHhhcCCCEE
Confidence            4789999999999999999999999999999986554211000  00       0000100  011 333322 468999


Q ss_pred             EEeecCC-ccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          230 VCCLSLN-KQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       230 ~~~lPlt-~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      +-+++.+ +.   . -...++.|+++..+|.++..
T Consensus       248 id~~g~~~~~---~-~~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          248 VVCASSLTDI---D-FNIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             EECCSCSTTC---C-TTTGGGGEEEEEEEEECCCC
T ss_pred             EECCCCCcHH---H-HHHHHHHhcCCCEEEEecCC
Confidence            9988752 11   1 23456778888889888653

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=95.92  E-value=0.021  Score=53.32  Aligned_cols=99  Identities=18%  Similarity=0.150  Sum_probs=66.7

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHH
Q 019081          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEF  222 (346)
Q Consensus       150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~el  222 (346)
                      .+.|.+|+++|=   |++.++++..+..||++|.+..|..-..+...             .+...+.+    ...++++.
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~-------------~~~~~~~g~~~~~~~d~~ea  218 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHI-------------VEELREKGMKVVETTTLEDV  218 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHH-------------HHHHHHTTCCEEEESCTHHH
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHH-------------HHHHHHcCCeEEEEcCHHHH
Confidence            488999999998   48999999999999999999876322111000             00111111    13689999


Q ss_pred             hhcCCEEEEeecCCc------c-----ccCCCCHHHHccCCCCcEEEEcC
Q 019081          223 ASKADVVVCCLSLNK------Q-----TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       223 l~~aDiV~~~lPlt~------~-----T~~li~~~~l~~mk~gailIN~s  261 (346)
                      ++++|+|..-.=-.+      +     ...-++.+.++++||+++|.-+.
T Consensus       219 v~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          219 IGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             HTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             hcCCCEEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            999999987542111      0     13556788888888888887663

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.92  E-value=0.0089  Score=54.23  Aligned_cols=69  Identities=20%  Similarity=0.369  Sum_probs=47.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhc-CCEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK-ADVV  229 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~-aDiV  229 (346)
                      .+++|.|.|.|.||+.+++.|...|++|++++|+........              .... ......++.++++. +|+|
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------------~~~~~Dl~d~~~~~~~~~~~~d~v   67 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGV--------------QTLIADVTRPDTLASIVHLRPEIL   67 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTC--------------CEEECCTTCGGGCTTGGGGCCSEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCC--------------ceEEccCCChHHHHHhhcCCCCEE
Confidence            367899999999999999999999999999998754311000              0000 00122345566766 9999


Q ss_pred             EEeec
Q 019081          230 VCCLS  234 (346)
Q Consensus       230 ~~~lP  234 (346)
                      +.+..
T Consensus        68 ih~a~   72 (286)
T 3gpi_A           68 VYCVA   72 (286)
T ss_dssp             EECHH
T ss_pred             EEeCC
Confidence            87764

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=95.90  E-value=0.07  Score=51.95  Aligned_cols=124  Identities=17%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEE-EcCCC----ccccccc----cccchhhhccccccccccccCCcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSW----ASHSQVS----CQSSALAVKNGIIDDLVDEKGCHED  218 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  218 (346)
                      |.++.|++|.|.|+|++|+.+|+.|..+|++|++ .|.+.    .....+.    .....+....+-+.++..  ....+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~--a~~i~  284 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPG--AERIT  284 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCC--ceEeC
Confidence            4579999999999999999999999999999984 45441    1000000    000000000000000000  01112


Q ss_pred             HHHHh-hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          219 IFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       219 l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      .++++ ..||+++-|.+     .+.|+.+....++ .-+++-.+-+++- .+ -.+.|++..|.
T Consensus       285 ~~~~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          285 DEEFWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             ----------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             ccchhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            23333 46999888753     4578888888884 5677777888864 33 34556665554

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=95.89  E-value=0.012  Score=54.93  Aligned_cols=68  Identities=13%  Similarity=0.151  Sum_probs=46.1

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh--------
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA--------  223 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--------  223 (346)
                      .++||||+ |.||+..++.++..+.+++ ++|++..... ..              ........+.++++++        
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~-~~--------------~~~~~~~~~~~~~~ll~~~~~l~~   68 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGL-VD--------------SFFPEAEFFTEPEAFEAYLEDLRD   68 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGG-GG--------------GTCTTCEEESCHHHHHHHHHHHHH
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHH-HH--------------hhCCCCceeCCHHHHHHHhhhhcc
Confidence            48999999 7899999999988898865 5676654310 00              0000001246788887        


Q ss_pred             --hcCCEEEEeecCC
Q 019081          224 --SKADVVVCCLSLN  236 (346)
Q Consensus       224 --~~aDiV~~~lPlt  236 (346)
                        ++.|+|++++|..
T Consensus        69 ~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A           69 RGEGVDYLSIASPNH   83 (312)
T ss_dssp             TTCCCSEEEECSCGG
T ss_pred             cCCCCcEEEECCCch
Confidence              6789999999853

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.88  E-value=0.009  Score=56.65  Aligned_cols=81  Identities=17%  Similarity=0.231  Sum_probs=44.2

Q ss_pred             eEEEEecCHHHHHHHHHHccC-CCEEEEE-cCCCccccccccccchhhhccc-cccccccccC--CcCCHHHHhhcCCEE
Q 019081          155 TVFILGFGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNG-IIDDLVDEKG--CHEDIFEFASKADVV  229 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~ell~~aDiV  229 (346)
                      +|||+|+|.||+.+++.+... ++++.++ |++..... ......++++-.+ .........+  ...+++++++++|+|
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~-~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEA-FIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHH-HHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHH-HHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            799999999999999988754 6787655 44321100 0000000000000 0001111111  123667777889999


Q ss_pred             EEeecCC
Q 019081          230 VCCLSLN  236 (346)
Q Consensus       230 ~~~lPlt  236 (346)
                      +.++|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999854

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.87  E-value=0.012  Score=51.24  Aligned_cols=101  Identities=17%  Similarity=0.263  Sum_probs=59.3

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|.|.| .|.||+.+++.|...|++|++++|+..+......   .        ..... ......++.++++.+|+|+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~--------~~~~~~Dl~d~~~~~~~~~~~d~vi~   73 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENE---H--------LKVKKADVSSLDEVCEVCKGADAVIS   73 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCT---T--------EEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccC---c--------eEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            6899999 5999999999999999999999997643211000   0        00000 00123457788999999998


Q ss_pred             eecCCccccCCCC------HHHHccCCC-C-cEEEEcCCCCC
Q 019081          232 CLSLNKQTAGIVN------KSFLSSMKK-G-SLLVNIARGGL  265 (346)
Q Consensus       232 ~lPlt~~T~~li~------~~~l~~mk~-g-ailIN~sRg~~  265 (346)
                      +.........++.      ...++.+++ + ..||.+|....
T Consensus        74 ~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~  115 (227)
T 3dhn_A           74 AFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGS  115 (227)
T ss_dssp             CCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTT
T ss_pred             eCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhh
Confidence            7754422222221      122333332 2 36888876553

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=95.87  E-value=0.039  Score=52.14  Aligned_cols=102  Identities=16%  Similarity=0.089  Sum_probs=68.6

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .+.|.+|+++|=|  +++++++..+..||++|.+..|..-..+.....   .      ..+.+...+    ...++++.+
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~---~------~~~~a~~~G~~v~~~~d~~eav  222 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVA---Q------CKKFAEESGAKLTLTEDPKEAV  222 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHH---H------HHHHHHHHTCEEEEESCHHHHT
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHH---H------HHHHHHHcCCeEEEEeCHHHHh
Confidence            6889999999996  999999999999999999987643211100000   0      000000111    247899999


Q ss_pred             hcCCEEEEeec-C-Cc--c---------ccCCCCHHHHccC-CCCcEEEEc
Q 019081          224 SKADVVVCCLS-L-NK--Q---------TAGIVNKSFLSSM-KKGSLLVNI  260 (346)
Q Consensus       224 ~~aDiV~~~lP-l-t~--~---------T~~li~~~~l~~m-k~gailIN~  260 (346)
                      +++|+|..-.= . ..  +         ...-++.+.++++ ||+++|.-+
T Consensus       223 ~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHc  273 (335)
T 1dxh_A          223 KGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHC  273 (335)
T ss_dssp             TTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEEC
T ss_pred             CCCCEEEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECC
Confidence            99999987332 1 00  0         2356789999999 999998877

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.84  E-value=0.0063  Score=57.51  Aligned_cols=103  Identities=10%  Similarity=-0.010  Sum_probs=61.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCcccccccc-ccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSC-QSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      ..++|+|||.|.||..+|..+...|+  +|..+|.+......... .....++.      .........+.++ +++||+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~------~~~~i~~t~d~~~-~~daDi   92 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFL------HTAKIVSGKDYSV-SAGSKL   92 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGS------CCSEEEEESSSCS-CSSCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcc------cCCeEEEcCCHHH-hCCCCE
Confidence            56899999999999999999987777  89999986532111000 00000000      0000001235555 899999


Q ss_pred             EEEeecCCccccCC-----CC--H-------HHHccCCCCcEEEEcCC
Q 019081          229 VVCCLSLNKQTAGI-----VN--K-------SFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       229 V~~~lPlt~~T~~l-----i~--~-------~~l~~mk~gailIN~sR  262 (346)
                      |+++... +...|+     +.  .       +.+....|++++++++-
T Consensus        93 VIitaG~-p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           93 VVITAGA-RQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             EEECCSC-CCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEEeCCC-CCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            9998653 333332     21  1       23444578999999973

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.82  E-value=0.013  Score=50.97  Aligned_cols=71  Identities=21%  Similarity=0.260  Sum_probs=48.8

Q ss_pred             eEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCC-cCCHHHHhhcCCEEEE
Q 019081          155 TVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGC-HEDIFEFASKADVVVC  231 (346)
Q Consensus       155 tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~ell~~aDiV~~  231 (346)
                      +|.|.| .|.||+.+++.|...|++|++++|+..+......            ..... .... ..++.++++.+|+|+.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~------------~~~~~~D~~d~~~~~~~~~~~~d~vi~   69 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNN------------VKAVHFDVDWTPEEMAKQLHGMDAIIN   69 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTT------------EEEEECCTTSCHHHHHTTTTTCSEEEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCC------------ceEEEecccCCHHHHHHHHcCCCEEEE
Confidence            688999 8999999999999999999999997643211000            00000 0012 2356677889999998


Q ss_pred             eecCCc
Q 019081          232 CLSLNK  237 (346)
Q Consensus       232 ~lPlt~  237 (346)
                      +.....
T Consensus        70 ~ag~~~   75 (219)
T 3dqp_A           70 VSGSGG   75 (219)
T ss_dssp             CCCCTT
T ss_pred             CCcCCC
Confidence            887554

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.80  E-value=0.016  Score=55.03  Aligned_cols=97  Identities=22%  Similarity=0.286  Sum_probs=61.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..+......  .+       .+...+......++.+.+.     .
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~--lG-------a~~vi~~~~~~~~~~~~~~~~~~~g  262 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV--FG-------ATDFVNPNDHSEPISQVLSKMTNGG  262 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH--TT-------CCEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH--hC-------CceEEeccccchhHHHHHHHHhCCC
Confidence            57899999999999999999999999 89999876544211000  00       0000100000123444333     4


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCC-cEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~g-ailIN~sR  262 (346)
                      .|+|+-++...+.     -...++.++++ ..+|.++-
T Consensus       263 ~D~vid~~g~~~~-----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          263 VDFSLECVGNVGV-----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             BSEEEECSCCHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCEEEECCCCHHH-----HHHHHHHhhcCCcEEEEEcC
Confidence            7999988753211     24567888998 88888864

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.77  E-value=0.0083  Score=60.90  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=33.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS  185 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~  185 (346)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D  360 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG  360 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            67999999999999999999999999998 68888754

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=95.74  E-value=0.014  Score=54.52  Aligned_cols=68  Identities=15%  Similarity=0.162  Sum_probs=45.7

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh--------
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA--------  223 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--------  223 (346)
                      .++||||+ |.||+..++.++..|.+++ ++|++...... .              ........+.++++++        
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~-~--------------~~~~~~~~~~~~~~ll~~~~~l~~   68 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGII-D--------------SISPQSEFFTEFEFFLDHASNLKR   68 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGG-G--------------GTCTTCEEESSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH-H--------------hhCCCCcEECCHHHHHHhhhhhhh
Confidence            48999999 7899999999988898865 56765433100 0              0000000246788877        


Q ss_pred             ---hcCCEEEEeecCC
Q 019081          224 ---SKADVVVCCLSLN  236 (346)
Q Consensus       224 ---~~aDiV~~~lPlt  236 (346)
                         ++.|+|++++|..
T Consensus        69 ~~~~~vD~V~I~tP~~   84 (318)
T 3oa2_A           69 DSATALDYVSICSPNY   84 (318)
T ss_dssp             STTTSCCEEEECSCGG
T ss_pred             ccCCCCcEEEECCCcH
Confidence               5689999999853

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.74  E-value=0.1  Score=50.68  Aligned_cols=123  Identities=20%  Similarity=0.171  Sum_probs=72.4

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHcc-CCCEEE-EEcCCCcccccc----ccccchhhhccccccccccccCCcCCHHH
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRP-FGVKII-ATKRSWASHSQV----SCQSSALAVKNGIIDDLVDEKGCHEDIFE  221 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~-~G~~V~-~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  221 (346)
                      |.++.|++|.|.|+|++|+.+|+.|.. .|++|+ +.|.+..- ..+    ......+....+-+.+...  ....+.++
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i-~dp~Gld~~~l~~~~~~~g~l~~y~~--a~~~~~~e  280 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGI-YNPEGFDVEELIRYKKEHGTVVTYPK--GERITNEE  280 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE-ECTTCCCHHHHHHHHHHSSCSTTCSS--SEEECHHH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeE-ECCCCCCHHHHHHHHHhhCCcccCCC--ceEcCchh
Confidence            567999999999999999999999998 999998 44442110 000    0000000000000000000  01123456


Q ss_pred             Hh-hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          222 FA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       222 ll-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ++ ..||+++-|..     .+.|+.+....++ --+++--+-+++- .++ .+.|.+..+.
T Consensus       281 il~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  333 (415)
T 2tmg_A          281 LLELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEA-DEILSRRGIL  333 (415)
T ss_dssp             HTTCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             hhcCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHH-HHHHHHCCCE
Confidence            55 58999998864     3467888888784 4567777777763 333 3556666654

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.73  E-value=0.11  Score=50.60  Aligned_cols=120  Identities=20%  Similarity=0.230  Sum_probs=72.2

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCC----cCCHHHH
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC----HEDIFEF  222 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~el  222 (346)
                      +.++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+..- ..+    .++...  .+.+.....+.    ..+-+++
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i-~dp----~Gld~~--~l~~~~~~~g~v~~~~~~~~e~  285 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGM-YAP----EGLDVA--EVLSAYEATGSLPRLDLAPEEV  285 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEE-ECT----TCCCHH--HHHHHHHHHSSCSCCCBCTTTG
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeE-ECC----CCCCHH--HHHHHHHhhCCcceeeccchhh
Confidence            457999999999999999999999999999998 55542110 000    000000  00000000000    0011233


Q ss_pred             h-hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          223 A-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       223 l-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      + ..||+++-|.     +.+.|+.+.-..++- -+++.-+-+++- .+ -.+.|++..|..
T Consensus       286 ~~~~~DVliP~A-----~~n~i~~~~A~~l~a-k~V~EgAN~p~t-~~-A~~~L~~~Gi~~  338 (419)
T 3aoe_E          286 FGLEAEVLVLAA-----REGALDGDRARQVQA-QAVVEVANFGLN-PE-AEAYLLGKGALV  338 (419)
T ss_dssp             GGSSCSEEEECS-----CTTCBCHHHHTTCCC-SEEEECSTTCBC-HH-HHHHHHHHTCEE
T ss_pred             hccCceEEEecc-----cccccccchHhhCCc-eEEEECCCCcCC-HH-HHHHHHHCCCEE
Confidence            3 4799998875     345788888887853 478888888864 33 346677666653

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.72  E-value=0.017  Score=54.95  Aligned_cols=97  Identities=16%  Similarity=0.237  Sum_probs=59.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..+......  .+       .+...+......++.+.+.     .
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~--lG-------a~~vi~~~~~~~~~~~~~~~~~~~g  261 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE--VG-------ATECVNPQDYKKPIQEVLTEMSNGG  261 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH--TT-------CSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH--hC-------CceEecccccchhHHHHHHHHhCCC
Confidence            57899999999999999999999999 89999876543211000  00       0000100000123444332     4


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCC-cEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~g-ailIN~sR  262 (346)
                      .|+|+-++... .+    -...++.++++ ..+|.++-
T Consensus       262 ~D~vid~~g~~-~~----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          262 VDFSFEVIGRL-DT----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             BSEEEECSCCH-HH----HHHHHHHBCTTTCEEEECSC
T ss_pred             CcEEEECCCCH-HH----HHHHHHHhhcCCcEEEEecc
Confidence            78888877532 11    24566778888 88888763

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=95.71  E-value=0.04  Score=52.04  Aligned_cols=102  Identities=13%  Similarity=0.084  Sum_probs=68.4

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .+.|.+|+++|=|  ++.++++..+..||++|.+..|..-..+.....   .      ..+.+...+    ...++++.+
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~---~------~~~~a~~~G~~v~~~~d~~eav  222 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVT---E------CRALAQQNGGNITLTEDVAKGV  222 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHH---H------HHHHHHHTTCEEEEESCHHHHH
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHH---H------HHHHHHHcCCeEEEEECHHHHh
Confidence            5889999999986  999999999999999999987643211100000   0      000001111    247899999


Q ss_pred             hcCCEEEEeec-CC-c--c---------ccCCCCHHHHccC-CCCcEEEEc
Q 019081          224 SKADVVVCCLS-LN-K--Q---------TAGIVNKSFLSSM-KKGSLLVNI  260 (346)
Q Consensus       224 ~~aDiV~~~lP-lt-~--~---------T~~li~~~~l~~m-k~gailIN~  260 (346)
                      +++|+|..-.= .. .  +         ...-++.+.++++ ||+++|.-+
T Consensus       223 ~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHc  273 (333)
T 1duv_G          223 EGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHC  273 (333)
T ss_dssp             TTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEEC
T ss_pred             CCCCEEEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECC
Confidence            99999987332 10 0  0         2356789999999 999988877

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=95.70  E-value=0.0061  Score=60.50  Aligned_cols=126  Identities=10%  Similarity=0.016  Sum_probs=70.6

Q ss_pred             CCeEEEEecCHHH--HHHHHHHc---cC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          153 GKTVFILGFGNIG--VELAKRLR---PF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       153 g~tvgIiG~G~IG--~~vA~~l~---~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      ..+|+|||.|.+|  .++|..+.   ++ |.+|..+|++.............+ .+..   ..........++++.+++|
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~-l~~~---~~~~~I~~ttD~~eal~dA   78 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKY-VEEV---GADLKFEKTMNLDDVIIDA   78 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHH-HHHT---TCCCEEEEESCHHHHHTTC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHH-hccC---CCCcEEEEECCHHHHhCCC
Confidence            4589999999974  55566553   34 889999998754311100000000 0000   0000001235888889999


Q ss_pred             CEEEEeecCC---------------------cccc-------CCCC--------H---HHHccCCCCcEEEEcCCCCCCC
Q 019081          227 DVVVCCLSLN---------------------KQTA-------GIVN--------K---SFLSSMKKGSLLVNIARGGLLD  267 (346)
Q Consensus       227 DiV~~~lPlt---------------------~~T~-------~li~--------~---~~l~~mk~gailIN~sRg~~vd  267 (346)
                      |+|++++|..                     .+|.       |++-        .   +.+....|+|++||++-.-=+-
T Consensus        79 D~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~  158 (480)
T 1obb_A           79 DFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG  158 (480)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHH
T ss_pred             CEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHH
Confidence            9999999731                     1110       1110        1   2344456899999998765555


Q ss_pred             HHHHHHHHHhCCCeEE
Q 019081          268 YEAIAHYLECGHLGGL  283 (346)
Q Consensus       268 ~~aL~~aL~~g~i~ga  283 (346)
                      +.++.+ +...++-|.
T Consensus       159 t~~~~k-~p~~rviG~  173 (480)
T 1obb_A          159 TTLVTR-TVPIKAVGF  173 (480)
T ss_dssp             HHHHHH-HSCSEEEEE
T ss_pred             HHHHHH-CCCCcEEec
Confidence            555544 555566555

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.69  E-value=0.0089  Score=56.10  Aligned_cols=126  Identities=16%  Similarity=0.201  Sum_probs=70.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC-ccccccccccchhhhccccccccccccC--C-cCCHHHHhhcC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW-ASHSQVSCQSSALAVKNGIIDDLVDEKG--C-HEDIFEFASKA  226 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~ell~~a  226 (346)
                      ..++|+|||.|.+|..+|..+...|. +|..+|++. .........+..    +.  ........  . ..+ .+.+++|
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~----~~--~~~~~~~~~i~~t~d-~~a~~~a   79 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDML----EA--SPVQGFDANIIGTSD-YADTADS   79 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHH----HH--HHHHTCCCCEEEESC-GGGGTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHH----Hh--hhhccCCCEEEEcCC-HHHhCCC
Confidence            46799999999999999999988888 999999873 111000000000    00  00000000  1 123 4668999


Q ss_pred             CEEEEeecCCccccCC-----C--C----H---HHHccCCCCcEEEEcCCCCCCCHH--HHHHH--HHhCCCeEEE--Ee
Q 019081          227 DVVVCCLSLNKQTAGI-----V--N----K---SFLSSMKKGSLLVNIARGGLLDYE--AIAHY--LECGHLGGLG--ID  286 (346)
Q Consensus       227 DiV~~~lPlt~~T~~l-----i--~----~---~~l~~mk~gailIN~sRg~~vd~~--aL~~a--L~~g~i~ga~--lD  286 (346)
                      |+|+++... +...|+     +  |    +   +.+....|++++++++  ..+|.-  .+.+.  +...++.|.+  ||
T Consensus        80 DvVIiaag~-p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs--NPvd~~t~~~~k~sg~p~~rviG~gt~LD  156 (315)
T 3tl2_A           80 DVVVITAGI-ARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT--NPVDAMTYSVFKEAGFPKERVIGQSGVLD  156 (315)
T ss_dssp             SEEEECCSC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHHHHHHHHHHCCCGGGEEECCHHHH
T ss_pred             CEEEEeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC--ChHHHHHHHHHHhcCCChHHEEeeccCcH
Confidence            999998752 333332     1  1    1   1233346899999997  344433  23322  1234666653  56


Q ss_pred             c
Q 019081          287 V  287 (346)
Q Consensus       287 V  287 (346)
                      .
T Consensus       157 ~  157 (315)
T 3tl2_A          157 T  157 (315)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=95.69  E-value=0.0085  Score=56.63  Aligned_cols=64  Identities=13%  Similarity=0.189  Sum_probs=43.9

Q ss_pred             CeEEEEecCHHHH-HHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccc---cC--CcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGV-ELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDE---KG--CHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~-~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~l~ell~~  225 (346)
                      .++||||+|.||+ ..+..++.. +++|+ ++|++ ...                  .+...   .+  .+.++++++++
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~------------------~~a~~~~~~~~~~~~~~~~ll~~   63 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNE------------------KAAAPFKEKGVNFTADLNELLTD   63 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCH------------------HHHHHHHTTTCEEESCTHHHHSC
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHH------------------HHHHhhCCCCCeEECCHHHHhcC
Confidence            3799999999999 567767654 78876 56765 211                  01111   11  24689999976


Q ss_pred             --CCEEEEeecCC
Q 019081          226 --ADVVVCCLSLN  236 (346)
Q Consensus       226 --aDiV~~~lPlt  236 (346)
                        .|+|++++|..
T Consensus        64 ~~~D~V~i~tp~~   76 (349)
T 3i23_A           64 PEIELITICTPAH   76 (349)
T ss_dssp             TTCCEEEECSCGG
T ss_pred             CCCCEEEEeCCcH
Confidence              89999999854

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=95.68  E-value=0.016  Score=52.36  Aligned_cols=81  Identities=16%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      .+|+|+|+|+||+.+++.+...+-++++ +|++....                  ...   ....++++++ ++|+|+-.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~~------------------~gv---~v~~dl~~l~-~~DVvIDf   61 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKAT------------------TPY---QQYQHIADVK-GADVAIDF   61 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC--------------------CCS---CBCSCTTTCT-TCSEEEEC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCcccc------------------CCC---ceeCCHHHHh-CCCEEEEe
Confidence            4899999999999999998866557665 78754320                  000   0235677777 99998744


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      .+. ..+     .+.+. ++.|.-+|....|
T Consensus        62 t~p-~a~-----~~~~~-l~~g~~vVigTTG   85 (243)
T 3qy9_A           62 SNP-NLL-----FPLLD-EDFHLPLVVATTG   85 (243)
T ss_dssp             SCH-HHH-----HHHHT-SCCCCCEEECCCS
T ss_pred             CCh-HHH-----HHHHH-HhcCCceEeCCCC
Confidence            321 122     12334 6777666655555

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.67  E-value=0.012  Score=55.57  Aligned_cols=81  Identities=16%  Similarity=0.187  Sum_probs=44.5

Q ss_pred             eEEEEecCHHHHHHHHHHccC-CCEEEEE-cCCCccccccccccchhhh-c--ccccccccc-ccCCcCCHHHHhhcCCE
Q 019081          155 TVFILGFGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAV-K--NGIIDDLVD-EKGCHEDIFEFASKADV  228 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~~~~l~ell~~aDi  228 (346)
                      +|||+|+|.||+.+++.+... ++++.++ |++.......... .++.+ .  .+.+..... ......++++++.++|+
T Consensus         4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~-~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKE-LGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHH-TTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHh-cCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            799999999999999988754 5787654 4432211000000 00000 0  000000000 00123478888889999


Q ss_pred             EEEeecCC
Q 019081          229 VVCCLSLN  236 (346)
Q Consensus       229 V~~~lPlt  236 (346)
                      |+.++|..
T Consensus        83 V~~aTp~~   90 (334)
T 2czc_A           83 IVDATPGG   90 (334)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCcc
Confidence            99999854

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=95.64  E-value=0.081  Score=52.07  Aligned_cols=128  Identities=14%  Similarity=0.096  Sum_probs=70.4

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEE-EEcCC-------Cccccccccccchhhhcc-cccccccccc--CCc
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRS-------WASHSQVSCQSSALAVKN-GIIDDLVDEK--GCH  216 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~  216 (346)
                      |.++.|+||.|-|+|++|+..|+.|..+|++|+ +.|.+       .-... .......+...+ +-+.......  ...
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~e-dl~~l~~~k~~~~g~v~~~~~~~~~a~~  325 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHE-NLEFLIDLKEEKKGRIKEYLNHSSTAKY  325 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHH-HHHHHHHHHTTTTCCGGGGGGTCSSCEE
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHH-HHHHHHHHHHhcCCcHHHHHhhcCCcEE
Confidence            467999999999999999999999999999998 44432       11000 000000000000 0011111100  001


Q ss_pred             CCHHHHh-hcCCEEEEeecCCccccCCCCHHHHccCC-CCc-EEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          217 EDIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK-KGS-LLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       217 ~~l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk-~ga-ilIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                      .+.++++ ..|||++-|.     +.+.|+.+...++. .++ +++--+-+++ ..++ .+.|++..|.-+
T Consensus       326 v~~~~~~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~~L~~rGIl~~  388 (470)
T 2bma_A          326 FPNEKPWGVPCTLAFPCA-----TQNDVDLDQAKLLQKNGCILVGEGANMPS-TVDA-INLFKSNNIIYC  388 (470)
T ss_dssp             CSSCCTTSSCCSEEEECS-----STTCBCSHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCEEE
T ss_pred             ecCcCeeecCccEEEecc-----ccCcCCHHHHHHHHhcCcEEEEeCCCCCC-CHHH-HHHHHHCCcEEE
Confidence            1111222 4799988765     34567777666651 233 5666666765 5555 677888777543

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=95.62  E-value=0.0042  Score=59.67  Aligned_cols=66  Identities=20%  Similarity=0.198  Sum_probs=46.2

Q ss_pred             CeEEEEecC-HHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhc--C
Q 019081          154 KTVFILGFG-NIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK--A  226 (346)
Q Consensus       154 ~tvgIiG~G-~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~--a  226 (346)
                      .++||||+| .+|+..+..++.. +++++ ++|++..+..                 .....++  .+.++++++++  .
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~-----------------~~a~~~g~~~~~~~~ell~~~~v   65 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRE-----------------RFGKEYGIPVFATLAEMMQHVQM   65 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHH-----------------HHHHHHTCCEESSHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHH-----------------HHHHHcCCCeECCHHHHHcCCCC
Confidence            479999999 9999999888764 67766 5677543211                 1111112  24789999975  9


Q ss_pred             CEEEEeecCC
Q 019081          227 DVVVCCLSLN  236 (346)
Q Consensus       227 DiV~~~lPlt  236 (346)
                      |+|++++|..
T Consensus        66 D~V~i~tp~~   75 (387)
T 3moi_A           66 DAVYIASPHQ   75 (387)
T ss_dssp             SEEEECSCGG
T ss_pred             CEEEEcCCcH
Confidence            9999999853

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.60  E-value=0.016  Score=55.03  Aligned_cols=97  Identities=15%  Similarity=0.262  Sum_probs=60.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..+......  .+       .+...+......++.+.+.     .
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~--lG-------a~~vi~~~~~~~~~~~~v~~~~~~g  260 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE--FG-------ATECINPQDFSKPIQEVLIEMTDGG  260 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH--HT-------CSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH--cC-------CceEeccccccccHHHHHHHHhCCC
Confidence            57899999999999999999999999 89999876544211000  00       0000100000123444332     4


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCC-cEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~g-ailIN~sR  262 (346)
                      .|+|+-++... .+    -...++.++++ ..+|.++-
T Consensus       261 ~D~vid~~g~~-~~----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          261 VDYSFECIGNV-KV----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             BSEEEECSCCH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCEEEECCCcH-HH----HHHHHHhhccCCcEEEEEec
Confidence            79998887532 11    24567788988 88888863

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.59  E-value=0.021  Score=53.86  Aligned_cols=98  Identities=21%  Similarity=0.301  Sum_probs=60.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC---HHHHh-----
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEFA-----  223 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell-----  223 (346)
                      .|++|.|+|.|.||...++.++.+|++|++.+++..+......  .+       .+...+.......   +.+..     
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~--lG-------a~~~~~~~~~~~~~~~i~~~~~~~~g  238 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN--CG-------ADVTLVVDPAKEEESSIIERIRSAIG  238 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH--TT-------CSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH--hC-------CCEEEcCcccccHHHHHHHHhccccC
Confidence            5789999999999999999999999999999876543111000  00       0000110000111   22222     


Q ss_pred             hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      ...|+|+-++... .+    -...++.++++..+|.++-+
T Consensus       239 ~g~D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          239 DLPNVTIDCSGNE-KC----ITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SCCSEEEECSCCH-HH----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCCEEEECCCCH-HH----HHHHHHHHhcCCEEEEEecC
Confidence            2489999887632 11    24567789999999998753

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.58  E-value=0.0072  Score=55.74  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=57.9

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCc---CCHHHHhhcCC
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEFASKAD  227 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~aD  227 (346)
                      .|++|.|+|. |.||..+++.++.+|++|++.+++..+......             ...+.....   .++.+.+...|
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-------------~ga~~~~~~~~~~~~~~~~~~~d  191 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA-------------LGAEEAATYAEVPERAKAWGGLD  191 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH-------------TTCSEEEEGGGHHHHHHHTTSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-------------cCCCEEEECCcchhHHHHhcCce
Confidence            4789999998 999999999999999999999986543211000             000000001   12333335678


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      +|+. +.. +     .-...++.|+++..+|.++-
T Consensus       192 ~vid-~g~-~-----~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          192 LVLE-VRG-K-----EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             EEEE-CSC-T-----THHHHHTTEEEEEEEEEC--
T ss_pred             EEEE-CCH-H-----HHHHHHHhhccCCEEEEEeC
Confidence            8887 653 1     12566778888888888753

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.56  E-value=0.0049  Score=59.59  Aligned_cols=65  Identities=20%  Similarity=0.187  Sum_probs=44.4

Q ss_pred             eEEEEecCHHHHHHHHHHccC---------CCEEEE-EcCCCccccccccccchhhhccccccccccccC---CcCCHHH
Q 019081          155 TVFILGFGNIGVELAKRLRPF---------GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFE  221 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~---------G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~e  221 (346)
                      +|||||+|.||+.-++.++..         +++|++ +|++..+..                 ...++++   .+.++++
T Consensus        28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~-----------------~~a~~~~~~~~y~d~~~   90 (412)
T 4gqa_A           28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAE-----------------RHAAKLGAEKAYGDWRE   90 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHH-----------------HHHHHHTCSEEESSHHH
T ss_pred             eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHH-----------------HHHHHcCCCeEECCHHH
Confidence            899999999999888777643         467664 576543311                 1112222   2478999


Q ss_pred             Hhh--cCCEEEEeecCC
Q 019081          222 FAS--KADVVVCCLSLN  236 (346)
Q Consensus       222 ll~--~aDiV~~~lPlt  236 (346)
                      +++  +.|+|++++|..
T Consensus        91 ll~~~~vD~V~I~tp~~  107 (412)
T 4gqa_A           91 LVNDPQVDVVDITSPNH  107 (412)
T ss_dssp             HHHCTTCCEEEECSCGG
T ss_pred             HhcCCCCCEEEECCCcH
Confidence            996  579999999854

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.54  E-value=0.021  Score=54.21  Aligned_cols=97  Identities=20%  Similarity=0.264  Sum_probs=60.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..+......  .+       .+..++......++.+.+.     .
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~--lG-------a~~vi~~~~~~~~~~~~i~~~t~gg  261 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE--LG-------ATECLNPKDYDKPIYEVICEKTNGG  261 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH--TT-------CSEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH--cC-------CcEEEecccccchHHHHHHHHhCCC
Confidence            57899999999999999999999999 89999876543211000  00       0000100000023444332     4


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCC-cEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~g-ailIN~sR  262 (346)
                      .|+|+-++... .+    -...++.++++ ..+|.++-
T Consensus       262 ~Dvvid~~g~~-~~----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          262 VDYAVECAGRI-ET----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             BSEEEECSCCH-HH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CCEEEECCCCH-HH----HHHHHHHHhcCCCEEEEEcc
Confidence            79999887531 21    24567788988 88888863

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=95.53  E-value=0.097  Score=49.93  Aligned_cols=104  Identities=18%  Similarity=0.170  Sum_probs=67.0

Q ss_pred             cCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081          151 LLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  224 (346)
Q Consensus       151 l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  224 (346)
                      +.|++|++||=|  ++..+++..+..+|++|.+..|..-....+... ...      ..+.....+    ...++++.++
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~-~~~------~~~~~~~~g~~i~~~~d~~eav~  250 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNV-LAK------CIELFKRNGGSLRFSTDKILAAQ  250 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHH-HHH------HHHHHHHHSCEEEEESCHHHHTT
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHH-HHH------HHHHHHHcCCEEEEECCHHHHhc
Confidence            889999999988  889999999999999999987632111000000 000      000011111    2368999999


Q ss_pred             cCCEEEEee--cCCcc-----------ccCCCCHHHHccCCCCcEEEEcC
Q 019081          225 KADVVVCCL--SLNKQ-----------TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       225 ~aDiV~~~l--Plt~~-----------T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +||+|..-+  ....+           ...-++.+.++.+|++++|.-+.
T Consensus       251 ~aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          251 DADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             TCSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             CCCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            999998732  11111           13567888888889999888774

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=95.52  E-value=0.043  Score=51.29  Aligned_cols=99  Identities=21%  Similarity=0.210  Sum_probs=66.2

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHH
Q 019081          150 TLLGKTVFILGF---GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  221 (346)
Q Consensus       150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  221 (346)
                      .+.|.+|+++|=   |++.++++..+..| |++|.+..|..-..+...             .+...+.+    ...++++
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~-------------~~~~~~~g~~~~~~~d~~e  217 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYI-------------LDMLDEKGIAWSLHSSIEE  217 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHH-------------HHHHHHTTCCEEECSCGGG
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHH-------------HHHHHHcCCeEEEEcCHHH
Confidence            478999999998   59999999999999 999999876332111000             00111111    1368999


Q ss_pred             HhhcCCEEEEeecCCc----c------ccCCCCHHHHccCCCCcEEEEcC
Q 019081          222 FASKADVVVCCLSLNK----Q------TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       222 ll~~aDiV~~~lPlt~----~------T~~li~~~~l~~mk~gailIN~s  261 (346)
                      .++++|+|..-.=-.+    +      ...-++.+.++++||+++|.-+.
T Consensus       218 av~~aDvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          218 VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             TTTTCSEEEECC-----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             HhcCCCEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            9999999977532111    1      13567888888888888887764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.51  E-value=0.027  Score=48.49  Aligned_cols=98  Identities=15%  Similarity=0.191  Sum_probs=58.3

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      ++|.|.| .|.||+.+++.|...|++|++++|+..+.....         .+  ......-....+. +.+..+|+|+.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~--~~~~~~D~~d~~~-~~~~~~d~vi~~   68 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KD--INILQKDIFDLTL-SDLSDQNVVVDA   68 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SS--SEEEECCGGGCCH-HHHTTCSEEEEC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CC--CeEEeccccChhh-hhhcCCCEEEEC
Confidence            3689999 599999999999999999999998754311000         00  0000000001112 778899999998


Q ss_pred             ecCCccccCC---CCHHHHccCCC--CcEEEEcCCC
Q 019081          233 LSLNKQTAGI---VNKSFLSSMKK--GSLLVNIARG  263 (346)
Q Consensus       233 lPlt~~T~~l---i~~~~l~~mk~--gailIN~sRg  263 (346)
                      ..........   .....+..|++  ...+|++|..
T Consensus        69 ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           69 YGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             CCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CcCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            8654332111   11344555554  3567777654

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.51  E-value=0.034  Score=52.97  Aligned_cols=104  Identities=15%  Similarity=0.153  Sum_probs=59.3

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCC------CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFG------VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      .+|+|+| .|.+|+.+.+.|...+      .++..+.++........   ..++  +  +....+......+. +.+..+
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~---~~~~--~--l~~~~~~~~~~~~~-~~~~~~   81 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLG---EHHP--H--LTPLAHRVVEPTEA-AVLGGH   81 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGG---GTCT--T--CGGGTTCBCEECCH-HHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchh---hhcc--c--ccccceeeeccCCH-HHhcCC
Confidence            5899999 9999999999998766      47766643211100000   0000  0  00000000011233 345689


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHH
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI  271 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL  271 (346)
                      |+|++++|...      ..+....++.|+.+|+.|-.--.+..+.
T Consensus        82 DvVf~alg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~  120 (352)
T 2nqt_A           82 DAVFLALPHGH------SAVLAQQLSPETLIIDCGADFRLTDAAV  120 (352)
T ss_dssp             SEEEECCTTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHH
T ss_pred             CEEEECCCCcc------hHHHHHHHhCCCEEEEECCCccCCcchh
Confidence            99999998652      4555555567899999985554444443

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.49  E-value=0.022  Score=54.19  Aligned_cols=97  Identities=16%  Similarity=0.236  Sum_probs=59.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..+......  .+       .+...+......++.+.+.     .
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~--lG-------a~~vi~~~~~~~~~~~~v~~~~~~g  265 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA--LG-------ATDCLNPRELDKPVQDVITELTAGG  265 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH--TT-------CSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH--hC-------CcEEEccccccchHHHHHHHHhCCC
Confidence            57899999999999999999999999 89999876544211000  00       0000100000123433332     4


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCC-cEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~g-ailIN~sR  262 (346)
                      .|+|+-++... .+    -...++.++++ ..+|.++-
T Consensus       266 ~Dvvid~~G~~-~~----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          266 VDYSLDCAGTA-QT----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             BSEEEESSCCH-HH----HHHHHHTBCTTTCEEEECCC
T ss_pred             ccEEEECCCCH-HH----HHHHHHHhhcCCCEEEEECC
Confidence            79988877531 11    24567778888 88888764

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.48  E-value=0.0085  Score=57.17  Aligned_cols=93  Identities=18%  Similarity=0.241  Sum_probs=60.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC---HHHHhhcCCE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEFASKADV  228 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDi  228 (346)
                      .|.+|.|+|.|.||...++.++.+|++|++.+++..+......    +         .++......+   .+++....|+
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----l---------Ga~~vi~~~~~~~~~~~~~g~Dv  260 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----L---------GADEVVNSRNADEMAAHLKSFDF  260 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----H---------TCSEEEETTCHHHHHTTTTCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----c---------CCcEEeccccHHHHHHhhcCCCE
Confidence            4789999999999999999999999999999976543211000    0         0000000111   2223346799


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      |+-++.....     -...++.|+++..+|.++.
T Consensus       261 vid~~g~~~~-----~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          261 ILNTVAAPHN-----LDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             EEECCSSCCC-----HHHHHTTEEEEEEEEECCC
T ss_pred             EEECCCCHHH-----HHHHHHHhccCCEEEEecc
Confidence            9888764211     2456778888888888864

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.45  E-value=0.0077  Score=56.77  Aligned_cols=66  Identities=18%  Similarity=0.188  Sum_probs=46.2

Q ss_pred             CeEEEEecC-HHHHHHHHHHccC--CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--
Q 019081          154 KTVFILGFG-NIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--  224 (346)
Q Consensus       154 ~tvgIiG~G-~IG~~vA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--  224 (346)
                      .++||||+| .+|+..+..++..  +++++ ++|++..+..                 ...+.++   .+.+++++++  
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~-----------------~~a~~~~~~~~~~~~~~ll~~~   81 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAE-----------------EFAKMVGNPAVFDSYEELLESG   81 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHH-----------------HHHHHHSSCEEESCHHHHHHSS
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHH-----------------HHHHHhCCCcccCCHHHHhcCC
Confidence            489999999 8999999988876  57764 5677543311                 1111111   2478999996  


Q ss_pred             cCCEEEEeecCC
Q 019081          225 KADVVVCCLSLN  236 (346)
Q Consensus       225 ~aDiV~~~lPlt  236 (346)
                      +.|+|++++|..
T Consensus        82 ~vD~V~i~tp~~   93 (340)
T 1zh8_A           82 LVDAVDLTLPVE   93 (340)
T ss_dssp             CCSEEEECCCGG
T ss_pred             CCCEEEEeCCch
Confidence            589999999853

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.45  E-value=0.0053  Score=57.89  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=33.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~  187 (346)
                      .|++|.|+|.|.||..+++.++.+|+ +|++.+++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~  203 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDF  203 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence            78999999999999999999999999 9999998643

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=95.42  E-value=0.12  Score=49.17  Aligned_cols=102  Identities=18%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .+.|.+|+++|=|  ++.++++..+..||++|.+..|..-..+.....   .      ..+.+...+    ...++++.+
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~---~------~~~~a~~~G~~v~~~~d~~eav  243 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQN---I------AKGFAEKSGAKLVITDDLDEGL  243 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHH---H------HHHHHHHHTCCEEEESCHHHHH
T ss_pred             CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHH---H------HHHHHHHcCCeEEEEeCHHHHh
Confidence            5889999999996  999999999999999999987643211100000   0      000001111    247899999


Q ss_pred             hcCCEEEEeec-CCcc----------ccCCCCHHHHccCC---CCcEEEEc
Q 019081          224 SKADVVVCCLS-LNKQ----------TAGIVNKSFLSSMK---KGSLLVNI  260 (346)
Q Consensus       224 ~~aDiV~~~lP-lt~~----------T~~li~~~~l~~mk---~gailIN~  260 (346)
                      +++|+|..-.= ...+          ...-++.+.++++|   ++++|.-+
T Consensus       244 ~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHc  294 (359)
T 2w37_A          244 KGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHC  294 (359)
T ss_dssp             TTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEEC
T ss_pred             cCCCEEEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECC
Confidence            99999987332 1000          23567888888888   88888777

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=95.42  E-value=0.18  Score=47.40  Aligned_cols=143  Identities=14%  Similarity=0.152  Sum_probs=84.4

Q ss_pred             HHhhCCcEEEecCCCCCCC-hhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecC--HHHHHHHH
Q 019081           94 AATRCGIKVARIPGDVTGN-AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG--NIGVELAK  170 (346)
Q Consensus        94 ~~~~~gI~v~n~p~~~~~n-a~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G--~IG~~vA~  170 (346)
                      .++-.+|+|.|.-+. ..+ .++.|+     ++.+.+++.          |.......+.|.+|++||=|  ++.++.+.
T Consensus       117 lA~~~~vPVINag~~-~~HPtQaLaD-----l~Ti~e~~g----------~~~~~~~~l~gl~va~vGD~~~~va~Sl~~  180 (328)
T 3grf_A          117 MAQHASVPCINALDD-FGHPLQMVCD-----FMTIKEKFT----------AAGEFSNGFKGIKFAYCGDSMNNVTYDLMR  180 (328)
T ss_dssp             HHHHCSSCEEESSCS-SCCHHHHHHH-----HHHHHHHHH----------HTTCCTTTGGGCCEEEESCCSSHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCC-CCCcHHHHHH-----HHHHHHHhC----------CccccccccCCcEEEEeCCCCcchHHHHHH
Confidence            455578999997442 222 233333     333333221          11112246899999999986  88999999


Q ss_pred             HHccCCCEEEEEcCCCcc--ccccccccchhhhccccccccccc--cC----CcCCHHHHhhcCCEEEEe----ecCCcc
Q 019081          171 RLRPFGVKIIATKRSWAS--HSQVSCQSSALAVKNGIIDDLVDE--KG----CHEDIFEFASKADVVVCC----LSLNKQ  238 (346)
Q Consensus       171 ~l~~~G~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~l~ell~~aDiV~~~----lPlt~~  238 (346)
                      .+..||++|.+..|..-.  .......   .      +......  .+    ...++++.++++|+|..-    +-..++
T Consensus       181 ~~~~~G~~v~~~~P~~~~~~p~~~~~~---~------~~~~~~~~~~g~~v~~~~d~~eav~~aDvvytd~W~sm~iq~e  251 (328)
T 3grf_A          181 GCALLGMECHVCCPDHKDFKPIKEVID---E------CEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMSYHITKE  251 (328)
T ss_dssp             HHHHHTCEEEEECCSSGGGSCCHHHHH---H------HHHHHHHHTCCCEEEEESSHHHHHTTCSEEEECCCC-------
T ss_pred             HHHHcCCEEEEECChHhhhCCCHHHHH---H------HHHHHhhccCCCeEEEEcCHHHHhcCCCEEEecCccccCCcHH
Confidence            999999999998764221  1000000   0      0000000  11    246899999999999863    221111


Q ss_pred             ---------ccCCCCHHHHccCCCCcEEEEcC
Q 019081          239 ---------TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       239 ---------T~~li~~~~l~~mk~gailIN~s  261 (346)
                               ...-++.+.++++|++++|.-+.
T Consensus       252 r~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          252 QKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             -CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             HHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence                     23567999999999999998774

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.41  E-value=0.019  Score=56.56  Aligned_cols=98  Identities=18%  Similarity=0.210  Sum_probs=65.2

Q ss_pred             ccccCCCeEEEEecC----------HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcC
Q 019081          148 GETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE  217 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (346)
                      +..+.|++|+|+|+-          .=...+++.|...|++|.+|||.....  ...             ..........
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~--~~~-------------~~~~~~~~~~  377 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKE--AQK-------------RLGDKVEYTT  377 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHH--HHH-------------HHGGGSEECS
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHH--HHH-------------hcCccceecC
Confidence            457899999999985          346889999999999999999865321  000             0000000125


Q ss_pred             CHHHHhhcCCEEEEeecCCccccCCCCHHHHc-cCCCCcEEEEcCCCC
Q 019081          218 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGG  264 (346)
Q Consensus       218 ~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~-~mk~gailIN~sRg~  264 (346)
                      ++++.++.+|.|+++++-. +-+. ++-+.+. .|+ +.+++++ |+-
T Consensus       378 ~~~~~~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          378 DMYDAVRGAEALFHVTEWK-EFRM-PDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             SHHHHTTTCSCEEECSCCG-GGSS-CCHHHHHHHSS-SCEEEES-SCC
T ss_pred             CHHHHhcCCCEEEEccCCH-HHhh-cCHHHHHHhcC-CCEEEEC-CCC
Confidence            7889999999999998743 3233 3555444 466 6688886 543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.40  E-value=0.026  Score=49.55  Aligned_cols=76  Identities=25%  Similarity=0.322  Sum_probs=51.0

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcC
Q 019081          151 LLGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKA  226 (346)
Q Consensus       151 l~g~tvgIiG-~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~a  226 (346)
                      +.++++.|.| .|.||+.+++.|...|+  +|++++|+..........  .        ..... ......+++++++.+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~--~--------~~~~~~D~~d~~~~~~~~~~~   85 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYK--N--------VNQEVVDFEKLDDYASAFQGH   85 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGG--G--------CEEEECCGGGGGGGGGGGSSC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccC--C--------ceEEecCcCCHHHHHHHhcCC
Confidence            5678999999 69999999999999999  999999876432110000  0        00000 000234567788899


Q ss_pred             CEEEEeecCC
Q 019081          227 DVVVCCLSLN  236 (346)
Q Consensus       227 DiV~~~lPlt  236 (346)
                      |+|+.+....
T Consensus        86 d~vi~~ag~~   95 (242)
T 2bka_A           86 DVGFCCLGTT   95 (242)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCCcc
Confidence            9999887643

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=95.40  E-value=0.12  Score=48.16  Aligned_cols=110  Identities=16%  Similarity=0.072  Sum_probs=71.3

Q ss_pred             ccC-CCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLL-GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~-g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .+. |++|++||= +++.++.+..+..||++|....|..-..+.....   .      ....+...+    ...++++.+
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~---~------~~~~a~~~g~~~~~~~d~~eav  212 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWE---F------AMKQALISGAKISLGYDKFEAL  212 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHH---H------HHHHHHHHTCEEEEESCHHHHH
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHH---H------HHHHHHHcCCeEEEEcCHHHHh
Confidence            477 999999996 5788888889999999999987643221100000   0      000000111    236899999


Q ss_pred             hcCCEEEEee---cCCc-c--------ccCCCCHHHHccCCCCcEEEEcC---CCCCCCH
Q 019081          224 SKADVVVCCL---SLNK-Q--------TAGIVNKSFLSSMKKGSLLVNIA---RGGLLDY  268 (346)
Q Consensus       224 ~~aDiV~~~l---Plt~-~--------T~~li~~~~l~~mk~gailIN~s---Rg~~vd~  268 (346)
                      +++|+|..-.   -..+ +        ...-++.+.++.+|++++|.-+.   ||.=|+.
T Consensus       213 ~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~  272 (307)
T 3tpf_A          213 KDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSE  272 (307)
T ss_dssp             TTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCH
T ss_pred             cCCCEEEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCH
Confidence            9999998754   1100 0        23567899999999999998875   5554444

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.39  E-value=0.018  Score=54.88  Aligned_cols=97  Identities=21%  Similarity=0.312  Sum_probs=59.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+......  .+       .+...+......++.+.+.     .
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~--lG-------a~~vi~~~~~~~~~~~~i~~~~~gg  263 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK--FG-------VNEFVNPKDHDKPIQEVIVDLTDGG  263 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT--TT-------CCEEECGGGCSSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH--cC-------CcEEEccccCchhHHHHHHHhcCCC
Confidence            58899999999999999999999999 89999977654211000  00       0000100000123444332     3


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCC-cEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~g-ailIN~sR  262 (346)
                      .|+|+-++... .+    -...++.+++| ..++.++-
T Consensus       264 ~D~vid~~g~~-~~----~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          264 VDYSFECIGNV-SV----MRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             BSEEEECSCCH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCEEEECCCCH-HH----HHHHHHHhhccCCEEEEEcc
Confidence            78888877531 11    24566778885 78887763

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=95.38  E-value=0.16  Score=47.71  Aligned_cols=103  Identities=15%  Similarity=0.165  Sum_probs=66.9

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  224 (346)
                      .+.|.+|++||= +++.++.+..+..+|++|.+..|..-..+.....   .      ..+.....+    ...++++.++
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~---~------~~~~a~~~g~~v~~~~d~~eav~  224 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSA---R------ASEIAGRTGAEVQILRDPFEAAR  224 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHH---H------HHHHHHHHTCCEEEESCHHHHHT
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHH---H------HHHHHHHcCCeEEEECCHHHHhc
Confidence            478999999996 6788888988989999999987643221100000   0      000000111    2368999999


Q ss_pred             cCCEEEEeecCCc-------c-----ccCCCCHHHHccCCCCcEEEEcC
Q 019081          225 KADVVVCCLSLNK-------Q-----TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       225 ~aDiV~~~lPlt~-------~-----T~~li~~~~l~~mk~gailIN~s  261 (346)
                      ++|+|..-.=-..       +     ...-++.+.++.+|++++|.-+.
T Consensus       225 ~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          225 GAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             TCSEEEECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             CCCEEEEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence            9999976431110       0     23467899999999999988773

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.37  E-value=0.0073  Score=56.78  Aligned_cols=96  Identities=19%  Similarity=0.223  Sum_probs=60.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh----hcCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA----SKAD  227 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~~aD  227 (346)
                      .|++|.|+|.|.||..+++.++.+|++|++.+++..+......  .+       .+...+.  ...++.+.+    ...|
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~--lG-------a~~~~d~--~~~~~~~~~~~~~~~~d  232 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE--LG-------ADLVVNP--LKEDAAKFMKEKVGGVH  232 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH--TT-------CSEEECT--TTSCHHHHHHHHHSSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH--CC-------CCEEecC--CCccHHHHHHHHhCCCC
Confidence            4789999999999999999999999999999986543211000  00       0000100  112333322    3579


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      +|+.++...+.     -...++.|+++..+|.++..
T Consensus       233 ~vid~~g~~~~-----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          233 AAVVTAVSKPA-----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             EEEESSCCHHH-----HHHHHHHEEEEEEEEECCCC
T ss_pred             EEEECCCCHHH-----HHHHHHHhhcCCEEEEeccc
Confidence            99887753221     24567778888889888754

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.37  E-value=0.032  Score=53.25  Aligned_cols=96  Identities=15%  Similarity=0.208  Sum_probs=54.7

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          153 GKTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       153 g~tvgIiG-~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      ..+|+|+| +|.||+.+++.|.... +++.++..+..... ..  ...++...+..   .... ...+ ++.+..+|+|+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~-~~--~~~~~~~~~~v---~~dl-~~~~-~~~~~~vDvVf   87 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQ-SM--ESVFPHLRAQK---LPTL-VSVK-DADFSTVDAVF   87 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTS-CH--HHHCGGGTTSC---CCCC-BCGG-GCCGGGCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCC-CH--HHhCchhcCcc---cccc-eecc-hhHhcCCCEEE
Confidence            35899999 9999999999987654 58777754321110 00  00000000000   0000 0112 44567899999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      +|+|....      .+.....+.|+.+|+.|-
T Consensus        88 ~atp~~~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           88 CCLPHGTT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             ECCCTTTH------HHHHHTSCTTCEEEECSS
T ss_pred             EcCCchhH------HHHHHHHhCCCEEEECCc
Confidence            99985422      333333377899999874

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.36  E-value=0.031  Score=51.77  Aligned_cols=82  Identities=16%  Similarity=0.098  Sum_probs=53.0

Q ss_pred             CccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhh
Q 019081          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFAS  224 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~  224 (346)
                      ....+.++++.|.|. |.||+.+++.|...|++|++++|+..........   +   .+  ..... ......+++++++
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~---l---~~--v~~~~~Dl~d~~~~~~~~~   85 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPP---V---AG--LSVIEGSVTDAGLLERAFD   85 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCS---C---TT--EEEEECCTTCHHHHHHHHH
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhc---c---CC--ceEEEeeCCCHHHHHHHHh
Confidence            346789999999997 9999999999999999999999864331100000   0   00  00000 0002234667787


Q ss_pred             --cCCEEEEeecCC
Q 019081          225 --KADVVVCCLSLN  236 (346)
Q Consensus       225 --~aDiV~~~lPlt  236 (346)
                        .+|+|+.+....
T Consensus        86 ~~~~D~vih~A~~~   99 (330)
T 2pzm_A           86 SFKPTHVVHSAAAY   99 (330)
T ss_dssp             HHCCSEEEECCCCC
T ss_pred             hcCCCEEEECCccC
Confidence              899998877543

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=95.36  E-value=0.014  Score=51.58  Aligned_cols=68  Identities=15%  Similarity=0.112  Sum_probs=44.4

Q ss_pred             CCeEEEEecCHHHHHHHHHH--ccCCCEEEE-EcCCCc-cccc-cccccchhhhccccccccccccCCcCCHHHHhhc--
Q 019081          153 GKTVFILGFGNIGVELAKRL--RPFGVKIIA-TKRSWA-SHSQ-VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--  225 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l--~~~G~~V~~-~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--  225 (346)
                      .++|+|+|+|++|+++++.+  ...|+++++ +|.++. .... ..              ....-. ...++++++++  
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i--------------~GvpV~-~~~dL~~~v~~~~  148 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE--------------DGIPVY-GISTINDHLIDSD  148 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT--------------TCCBEE-EGGGHHHHC-CCS
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE--------------CCeEEe-CHHHHHHHHHHcC
Confidence            45899999999999999973  456888664 676554 3110 00              001111 23578888864  


Q ss_pred             CCEEEEeecC
Q 019081          226 ADVVVCCLSL  235 (346)
Q Consensus       226 aDiV~~~lPl  235 (346)
                      .|++++++|.
T Consensus       149 Id~vIIAvPs  158 (212)
T 3keo_A          149 IETAILTVPS  158 (212)
T ss_dssp             CCEEEECSCG
T ss_pred             CCEEEEecCc
Confidence            8999999985

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.34  E-value=0.039  Score=51.48  Aligned_cols=36  Identities=22%  Similarity=0.040  Sum_probs=30.9

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ...++|.|.|. |.||+.+++.|...|++|++++|+.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34678999998 9999999999999999999999875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.33  E-value=0.018  Score=53.59  Aligned_cols=73  Identities=11%  Similarity=0.042  Sum_probs=47.8

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhc
Q 019081          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK  225 (346)
Q Consensus       148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~  225 (346)
                      ...+.+++|.|.|. |.||+.+++.|...|++|++++|+......                .... ......++.++++.
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~----------------~~~~~Dl~d~~~~~~~~~~   77 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGG----------------EEVVGSLEDGQALSDAIMG   77 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCC----------------SEEESCTTCHHHHHHHHTT
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCc----------------cEEecCcCCHHHHHHHHhC
Confidence            46788999999998 999999999999999999999987543100                0000 00123457788899


Q ss_pred             CCEEEEeecCC
Q 019081          226 ADVVVCCLSLN  236 (346)
Q Consensus       226 aDiV~~~lPlt  236 (346)
                      +|+|+.+....
T Consensus        78 ~d~vih~A~~~   88 (347)
T 4id9_A           78 VSAVLHLGAFM   88 (347)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCccc
Confidence            99998776543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.32  E-value=0.012  Score=55.44  Aligned_cols=97  Identities=13%  Similarity=0.106  Sum_probs=61.6

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+|. |.||+.+++.++..|++|++.+++..+..... . .+       .+...+ .....++.+.+.     .
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~-~-~g-------~~~~~d-~~~~~~~~~~~~~~~~~~  238 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR-S-IG-------GEVFID-FTKEKDIVGAVLKATDGG  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH-H-TT-------CCEEEE-TTTCSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH-H-cC-------CceEEe-cCccHhHHHHHHHHhCCC
Confidence            5789999999 89999999999999999999998654321100 0 00       000011 001234544443     4


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      .|+|+.++...+     .-...++.|+++..+|+++..
T Consensus       239 ~D~vi~~~g~~~-----~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          239 AHGVINVSVSEA-----AIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             EEEEEECSSCHH-----HHHHHTTSEEEEEEEEECCCC
T ss_pred             CCEEEECCCcHH-----HHHHHHHHHhcCCEEEEEeCC
Confidence            788888775321     124567778888899988753

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.31  E-value=0.015  Score=54.92  Aligned_cols=98  Identities=20%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHH-HHh----h
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIF-EFA----S  224 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~-ell----~  224 (346)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..+......  .+       .+...+... ...++. ++.    .
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~--lG-------a~~vi~~~~~~~~~~~~~i~~~~~~  241 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE--IG-------ADLVLQISKESPQEIARKVEGQLGC  241 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH--TT-------CSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH--hC-------CCEEEcCcccccchHHHHHHHHhCC
Confidence            47899999999999999999999999 89999876543110000  00       000010000 001111 222    2


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      ..|+|+-++.....     -...++.++++..++.++-+
T Consensus       242 g~D~vid~~g~~~~-----~~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          242 KPEVTIECTGAEAS-----IQAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             CCSEEEECSCCHHH-----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCEEEECCCChHH-----HHHHHHHhcCCCEEEEEecC
Confidence            48999988763211     14567889999999998743

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=95.31  E-value=0.022  Score=52.64  Aligned_cols=105  Identities=15%  Similarity=0.174  Sum_probs=64.1

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCE
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  228 (346)
                      ..+|+|+|+ |++|+.+++.++..|++++ .+|+..... . .              ....   .+.+++++..  ..|+
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~-~-~--------------~G~~---vy~sl~el~~~~~~D~   67 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT-T-H--------------LGLP---VFNTVREAVAATGATA   67 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC-E-E--------------TTEE---EESSHHHHHHHHCCCE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc-e-e--------------CCee---ccCCHHHHhhcCCCCE
Confidence            458999999 9999999999988899854 566532100 0 0              0000   2468999988  8999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHHHHHhCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECGHL  280 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g~i  280 (346)
                      +++++|.. ....++. +.++ .... .+|..+-|-- -+.+.|.++.++..+
T Consensus        68 viI~tP~~-~~~~~~~-ea~~-~Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv  116 (288)
T 2nu8_A           68 SVIYVPAP-FCKDSIL-EAID-AGIK-LIITITEGIPTLDMLTVKVKLDEAGV  116 (288)
T ss_dssp             EEECCCGG-GHHHHHH-HHHH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             EEEecCHH-HHHHHHH-HHHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            99999853 3333322 2222 2222 2344544432 234478888877655

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.29  E-value=0.0086  Score=56.32  Aligned_cols=94  Identities=22%  Similarity=0.230  Sum_probs=60.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..+......          ..+...+.  ...++.+.+.     .
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----------la~~v~~~--~~~~~~~~~~~~~~~g  231 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP----------YADRLVNP--LEEDLLEVVRRVTGSG  231 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT----------TCSEEECT--TTSCHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----------hHHhccCc--CccCHHHHHHHhcCCC
Confidence            78999999999999999999999999 99999986433111000          00001100  1124444332     4


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      .|+|+-++...+.     -...++.|+++..+|.++-
T Consensus       232 ~D~vid~~g~~~~-----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          232 VEVLLEFSGNEAA-----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEEEEECSCCHHH-----HHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCCHHH-----HHHHHHHHhcCCEEEEEec
Confidence            7888887753211     2456677888888888864

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=95.28  E-value=0.018  Score=54.08  Aligned_cols=61  Identities=20%  Similarity=0.227  Sum_probs=43.9

Q ss_pred             CCeEEEEecCHHHH-HHHHHHccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc---C
Q 019081          153 GKTVFILGFGNIGV-ELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---A  226 (346)
Q Consensus       153 g~tvgIiG~G~IG~-~vA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---a  226 (346)
                      -.++||||+|.||+ ..++.++.. +++|++ +|++....                   ...   .+.++++++++   .
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~-------------------g~~---~~~~~~~ll~~~~~v   82 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVE-------------------GVN---SYTTIEAMLDAEPSI   82 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCCT-------------------TSE---EESSHHHHHHHCTTC
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhhc-------------------CCC---ccCCHHHHHhCCCCC
Confidence            45899999999998 688877764 788654 56653220                   011   24689999875   8


Q ss_pred             CEEEEeecC
Q 019081          227 DVVVCCLSL  235 (346)
Q Consensus       227 DiV~~~lPl  235 (346)
                      |+|++++|.
T Consensus        83 D~V~i~tp~   91 (330)
T 4ew6_A           83 DAVSLCMPP   91 (330)
T ss_dssp             CEEEECSCH
T ss_pred             CEEEEeCCc
Confidence            999999984

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.28  E-value=0.044  Score=50.60  Aligned_cols=107  Identities=10%  Similarity=0.040  Sum_probs=72.5

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      +.|+++.++|.......+++.|...|++|....-..... .               .....   ...++.+.++++|+|+
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~-~---------------~~g~~---~~~~~~~~~~~~d~ii   65 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDH-G---------------FTGAV---KCNIDEIPFQQIDSII   65 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSC-C---------------CTTEE---ECCGGGSCGGGCSEEE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEecccccc-c---------------cccce---eccchHHHHhcCCEEE
Confidence            568899999999999999999999999998763211100 0               00000   1234567788999998


Q ss_pred             EeecCCc----------cccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          231 CCLSLNK----------QTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       231 ~~lPlt~----------~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +-.|...          .+...++++.++.++++.+++ +   + +|..++++++.+..|.
T Consensus        66 ~~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~-~---g-~~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           66 LPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF-S---G-ISNAYLENIAAQAKRK  121 (300)
T ss_dssp             CCSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE-E---S-SCCHHHHHHHHHTTCC
T ss_pred             eccccccCCcccccccccCCccchHHHHhhcCCCCEEE-E---e-cCCHHHHHHHHHCCCE
Confidence            7444321          233347899999999998877 3   3 3778877777766664

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.27  E-value=0.01  Score=55.90  Aligned_cols=125  Identities=18%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      ..+|+|||.|.+|..++..+...+.  ++..+|....+.......     ..+.  ...........+..+.++.||+|+
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~d-----l~~~--~~~~~~~~i~~~~~~a~~~aDvVi   81 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAID-----LSNA--LPFTSPKKIYSAEYSDAKDADLVV   81 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHH-----HHTT--GGGSCCCEEEECCGGGGGGCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHH-----HHHH--HHhcCCeEEEECCHHHhCCCCEEE
Confidence            3689999999999999998876565  899999864321110000     0000  000000000113456789999999


Q ss_pred             EeecCCccccCCC-------CH-------HHHccCCCCcEEEEcCCCCCCCH--HHHHHH--HHhCCCeEEE--Eec
Q 019081          231 CCLSLNKQTAGIV-------NK-------SFLSSMKKGSLLVNIARGGLLDY--EAIAHY--LECGHLGGLG--IDV  287 (346)
Q Consensus       231 ~~lPlt~~T~~li-------~~-------~~l~~mk~gailIN~sRg~~vd~--~aL~~a--L~~g~i~ga~--lDV  287 (346)
                      ++.+. +...++-       |.       +.+....|++++|++  ...+|.  ..+.+.  +...++-|.+  ||+
T Consensus        82 i~ag~-~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~  155 (326)
T 2zqz_A           82 ITAGA-PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVDILTYATWKLSGFPKNRVVGSGTSLDT  155 (326)
T ss_dssp             ECCCC-C-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHHHHHHHHHHHCCCGGGEEECTTHHHH
T ss_pred             EcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHHHHHHHHHHHcCCCHHHEEEccccchH
Confidence            99874 3333321       11       122333689999998  444443  333333  3334666652  563

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.26  E-value=0.0055  Score=59.45  Aligned_cols=79  Identities=16%  Similarity=0.260  Sum_probs=47.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC---CEEEEEcCCCccccccccccchhhhcc-ccccccccccCCcCCHHHHhhc--CC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWASHSQVSCQSSALAVKN-GIIDDLVDEKGCHEDIFEFASK--AD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ell~~--aD  227 (346)
                      ++|+|+|.|.||+.+++.|...|   .+|.+++|+..+.......   +.... ..+...........++++++++  +|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~---l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQS---IKAKGYGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHH---HHHTTCCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHH---hhhhcCCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            58999999999999999998887   4899999875432111000   00000 0000000000023457788887  89


Q ss_pred             EEEEeecC
Q 019081          228 VVVCCLSL  235 (346)
Q Consensus       228 iV~~~lPl  235 (346)
                      +|+.+.|.
T Consensus        79 vVin~ag~   86 (405)
T 4ina_A           79 IVLNIALP   86 (405)
T ss_dssp             EEEECSCG
T ss_pred             EEEECCCc
Confidence            99999874

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.25  E-value=0.23  Score=45.91  Aligned_cols=67  Identities=24%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh
Q 019081          150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~  224 (346)
                      .+.|.+|+++|=   +++.++.+..+..||++|....|..-..   .              .. ...+  ...++++.++
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p---~--------------~~-~~~g~~~~~d~~eav~  204 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIP---R--------------DV-EVFKVDVFDDVDKGID  204 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSC---T--------------TG-GGGCEEEESSHHHHHH
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCC---c--------------hH-HHCCCEEEcCHHHHhC
Confidence            488999999997   9999999999999999999987632211   0              00 0111  2468999999


Q ss_pred             cCCEEEEeecC
Q 019081          225 KADVVVCCLSL  235 (346)
Q Consensus       225 ~aDiV~~~lPl  235 (346)
                      ++|+|.. +-.
T Consensus       205 ~aDvvy~-~~~  214 (291)
T 3d6n_B          205 WADVVIW-LRL  214 (291)
T ss_dssp             HCSEEEE-CCC
T ss_pred             CCCEEEE-eCc
Confidence            9999998 543

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=95.25  E-value=0.0068  Score=58.23  Aligned_cols=66  Identities=14%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHccC--CCEEEE-EcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPF--GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~--G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (346)
                      -.+|||||+| +|+.-++.++..  ++++++ +|++..+..                 ..+.+++  .+.++++++++.|
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~-----------------~~a~~~gv~~~~~~~~l~~~~D   68 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSR-----------------ELAHAFGIPLYTSPEQITGMPD   68 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHH-----------------HHHHHTTCCEESSGGGCCSCCS
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHH-----------------HHHHHhCCCEECCHHHHhcCCC
Confidence            3589999999 799888877765  688764 576554321                 1222222  2578999999999


Q ss_pred             EEEEeecCC
Q 019081          228 VVVCCLSLN  236 (346)
Q Consensus       228 iV~~~lPlt  236 (346)
                      ++++++|..
T Consensus        69 ~v~i~~p~~   77 (372)
T 4gmf_A           69 IACIVVRST   77 (372)
T ss_dssp             EEEECCC--
T ss_pred             EEEEECCCc
Confidence            999999853

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.23  E-value=0.028  Score=55.73  Aligned_cols=98  Identities=10%  Similarity=0.194  Sum_probs=67.7

Q ss_pred             cccCCCeEEEEecC----------HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC
Q 019081          149 ETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED  218 (346)
Q Consensus       149 ~~l~g~tvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (346)
                      ..+.|++|+|+|+-          .=...+++.|...|++|.+|||.....                 ...    .-..+
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~-----------------~~~----~~~~~  407 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNY-----------------PGV----EISDN  407 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCB-----------------TTB----CEESC
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCcccc-----------------cCc----ceecC
Confidence            46899999999974          236889999999999999999865321                 000    01257


Q ss_pred             HHHHhhcCCEEEEeecCCccccCCCCHHHH-ccCC-CCcEEEEcCCCCCCCHHHH
Q 019081          219 IFEFASKADVVVCCLSLNKQTAGIVNKSFL-SSMK-KGSLLVNIARGGLLDYEAI  271 (346)
Q Consensus       219 l~ell~~aDiV~~~lPlt~~T~~li~~~~l-~~mk-~gailIN~sRg~~vd~~aL  271 (346)
                      +++.++.||+|+++++-. +-+. ++-+.+ +.|+ ++.+++++ |+ +.|.+.+
T Consensus       408 ~~~~~~~ad~vvi~t~~~-~f~~-~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~  458 (478)
T 3g79_A          408 LEEVVRNADAIVVLAGHS-AYSS-LKADWAKKVSAKANPVIIDG-RN-VIEPDEF  458 (478)
T ss_dssp             HHHHHTTCSEEEECSCCH-HHHS-CCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred             HHHHHhcCCEEEEecCCH-HHHh-hhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            899999999999998642 3233 354444 4577 47899996 55 3455443

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.21  E-value=0.019  Score=51.87  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=31.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .++|.|.|.|.||+.+++.|...|++|++++|+..
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            36899999999999999999999999999998754

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.21  E-value=0.012  Score=55.96  Aligned_cols=36  Identities=22%  Similarity=0.324  Sum_probs=33.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|++|.|+|.|.||...++.++.+|++|++.+++..
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~  224 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSRE  224 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCch
Confidence            588999999999999999999999999999987643

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=95.20  E-value=0.021  Score=52.77  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=65.1

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCE
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  228 (346)
                      .++|.|+|+ |++|+.+++.++..|++++ .+++......  .              ....   .+.+++++.+  ..|+
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~--i--------------~G~~---vy~sl~el~~~~~~Dv   67 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGME--V--------------LGVP---VYDTVKEAVAHHEVDA   67 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE--E--------------TTEE---EESSHHHHHHHSCCSE
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCce--E--------------CCEE---eeCCHHHHhhcCCCCE
Confidence            468999999 9999999999988899854 5665431100  0              0000   2467899888  8999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcE-EEEcCCCCC-CCHHHHHHHHHhCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSL-LVNIARGGL-LDYEAIAHYLECGHL  280 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gai-lIN~sRg~~-vd~~aL~~aL~~g~i  280 (346)
                      +++.+|. +.+...+.+- .   +.|.- +|..+-|=- -+++.|.++.++..+
T Consensus        68 ~Ii~vp~-~~~~~~~~ea-~---~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi  116 (288)
T 1oi7_A           68 SIIFVPA-PAAADAALEA-A---HAGIPLIVLITEGIPTLDMVRAVEEIKALGS  116 (288)
T ss_dssp             EEECCCH-HHHHHHHHHH-H---HTTCSEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             EEEecCH-HHHHHHHHHH-H---HCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9999984 3333333222 2   22322 455554421 234578888877655

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.18  E-value=0.015  Score=54.50  Aligned_cols=124  Identities=16%  Similarity=0.174  Sum_probs=67.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .+|+|||.|.+|..++..+...+.  ++..+|....+....... ..    +.  ...........+..+.+++||+|++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~d-l~----~~--~~~~~~~~v~~~~~~a~~~aDvVii   78 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALD-LE----DA--QAFTAPKKIYSGEYSDCKDADLVVI   78 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-HH----GG--GGGSCCCEEEECCGGGGTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHH-HH----HH--HHhcCCeEEEECCHHHhCCCCEEEE
Confidence            589999999999999999876665  899999864321100000 00    00  0000000001134567899999999


Q ss_pred             eecCCccccCC-------CCH-------HHHccCCCCcEEEEcCCCCCCC--HHHHHHH--HHhCCCeEEE--Eec
Q 019081          232 CLSLNKQTAGI-------VNK-------SFLSSMKKGSLLVNIARGGLLD--YEAIAHY--LECGHLGGLG--IDV  287 (346)
Q Consensus       232 ~lPlt~~T~~l-------i~~-------~~l~~mk~gailIN~sRg~~vd--~~aL~~a--L~~g~i~ga~--lDV  287 (346)
                      +.+. +...++       .|.       +.+....|++++|+++  ..+|  ...+.+.  +...++-|.+  ||+
T Consensus        79 ~ag~-~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t~~~~k~s~~p~~rviG~gt~LD~  151 (318)
T 1ez4_A           79 TAGA-PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA--NPVDILTYATWKFSGFPKERVIGSGTSLDS  151 (318)
T ss_dssp             CCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEECTTHHHH
T ss_pred             CCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CcHHHHHHHHHHHcCCCHHHEEeccccchH
Confidence            9874 332322       111       2333447899999984  4444  3333333  3334666662  563

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.17  E-value=0.031  Score=52.29  Aligned_cols=102  Identities=17%  Similarity=0.158  Sum_probs=61.2

Q ss_pred             eEEEEec-CHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhcccccccccc-ccCC---cCCHHHHhhcCC
Q 019081          155 TVFILGF-GNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGC---HEDIFEFASKAD  227 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~l~ell~~aD  227 (346)
                      +|+|+|. |.+|..++..|...|  .+|..+|+..... ...+    +  .    +.... ....   ..++++.++.||
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~-~a~d----L--~----~~~~~~~l~~~~~t~d~~~a~~~aD   70 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VAAD----L--S----HIETRATVKGYLGPEQLPDCLKGCD   70 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HHHH----H--T----TSSSSCEEEEEESGGGHHHHHTTCS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHH-HHHH----H--h----ccCcCceEEEecCCCCHHHHhCCCC
Confidence            7999998 999999999998767  6899999865110 0000    0  0    00000 0001   136888899999


Q ss_pred             EEEEeecCCccccCCC-------C----H---HHHccCCCCcEEEEcCCCCCCCHHH
Q 019081          228 VVVCCLSLNKQTAGIV-------N----K---SFLSSMKKGSLLVNIARGGLLDYEA  270 (346)
Q Consensus       228 iV~~~lPlt~~T~~li-------~----~---~~l~~mk~gailIN~sRg~~vd~~a  270 (346)
                      +|+++.+.. ...+.-       |    +   +.+....|++++|++  ...+|.-.
T Consensus        71 vVvi~ag~~-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~  124 (314)
T 1mld_A           71 VVVIPAGVP-RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI  124 (314)
T ss_dssp             EEEECCSCC-CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred             EEEECCCcC-CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence            999987532 222211       1    1   122233588999997  44566543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.17  E-value=0.0056  Score=52.65  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=32.0

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .|++|.|+| .|.||+.+++.++..|++|++.+++.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~   73 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   73 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999 69999999999999999999998764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.17  E-value=0.016  Score=54.77  Aligned_cols=94  Identities=20%  Similarity=0.206  Sum_probs=61.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC---HHHHhhcCCE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEFASKADV  228 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDi  228 (346)
                      .|++|.|+|.|.||...++.++.+|++|++++++..+.......            -.++......+   +.++....|+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~------------lGa~~vi~~~~~~~~~~~~~g~D~  247 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQD------------LGADDYVIGSDQAKMSELADSLDY  247 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTT------------SCCSCEEETTCHHHHHHSTTTEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH------------cCCceeeccccHHHHHHhcCCCCE
Confidence            58899999999999999999999999999999865431100000            00010001112   2233345799


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      |+-++.....     -...++.++++..++.++-
T Consensus       248 vid~~g~~~~-----~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          248 VIDTVPVHHA-----LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             EEECCCSCCC-----SHHHHTTEEEEEEEEECSC
T ss_pred             EEECCCChHH-----HHHHHHHhccCCEEEEeCC
Confidence            9988764221     2456778899999998864

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.15  E-value=0.01  Score=57.10  Aligned_cols=67  Identities=15%  Similarity=0.088  Sum_probs=46.6

Q ss_pred             CCeEEEEecCH---HHHHHHHHHccCC-CEEEE--EcCCCccccccccccchhhhccccccccccccC-----CcCCHHH
Q 019081          153 GKTVFILGFGN---IGVELAKRLRPFG-VKIIA--TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-----CHEDIFE  221 (346)
Q Consensus       153 g~tvgIiG~G~---IG~~vA~~l~~~G-~~V~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~e  221 (346)
                      -.+|||||+|.   ||+..+..++..+ +++++  +|++..+...                 ...+++     .+.++++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~-----------------~a~~~g~~~~~~~~~~~~   74 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSA-----------------FGEQLGVDSERCYADYLS   74 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHH-----------------HHHHTTCCGGGBCSSHHH
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHH-----------------HHHHhCCCcceeeCCHHH
Confidence            35899999999   9999888776554 78764  5876543211                 111111     2468999


Q ss_pred             Hhhc-------CCEEEEeecCC
Q 019081          222 FASK-------ADVVVCCLSLN  236 (346)
Q Consensus       222 ll~~-------aDiV~~~lPlt  236 (346)
                      ++++       .|+|++++|..
T Consensus        75 ll~~~~~~~~~vD~V~i~tp~~   96 (398)
T 3dty_A           75 MFEQEARRADGIQAVSIATPNG   96 (398)
T ss_dssp             HHHHHTTCTTCCSEEEEESCGG
T ss_pred             HHhcccccCCCCCEEEECCCcH
Confidence            9975       89999999854

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=95.11  E-value=0.23  Score=46.91  Aligned_cols=102  Identities=12%  Similarity=0.084  Sum_probs=64.0

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  224 (346)
                      .+.|++|++||= +++.++++..+..||++|.+..|..-..+.....   .      ........+    ...+++ .++
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~---~------~~~~a~~~g~~v~~~~d~~-av~  241 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQA---K------LAKNCEVSGGSFLVTDDAS-SVE  241 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHH---H------HHHHHHHHCCEEEEECCGG-GGT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHH---H------HHHHHHHcCCEEEEECChh-HHc
Confidence            589999999996 6888899999999999999987643221100000   0      000001111    236788 999


Q ss_pred             cCCEEEEee--cC--Ccc---------c-cCCCCHHHHccCCCCcEEEEcC
Q 019081          225 KADVVVCCL--SL--NKQ---------T-AGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       225 ~aDiV~~~l--Pl--t~~---------T-~~li~~~~l~~mk~gailIN~s  261 (346)
                      ++|+|..-+  ..  .++         . ..-++.+.++++|++++|.-+.
T Consensus       242 ~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          242 GADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             TCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             CCCEEEecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence            999998632  11  011         1 1556777887788888877764

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.11  E-value=0.011  Score=56.15  Aligned_cols=66  Identities=9%  Similarity=0.047  Sum_probs=45.4

Q ss_pred             CeEEEEecCHHHH-HHHHHHccCCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhc--C
Q 019081          154 KTVFILGFGNIGV-ELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK--A  226 (346)
Q Consensus       154 ~tvgIiG~G~IG~-~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~--a  226 (346)
                      .+|||||+|.+|. ..+..++.-|++++ ++|++..+..                 .....++   .+.++++++++  .
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~-----------------~~a~~~~~~~~~~~~~~ll~~~~v   89 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAA-----------------EFSAVYADARRIATAEEILEDENI   89 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHH-----------------HHHHHSSSCCEESCHHHHHTCTTC
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCCCC
Confidence            5899999999995 56666666789965 5676543311                 1112221   25799999975  8


Q ss_pred             CEEEEeecCC
Q 019081          227 DVVVCCLSLN  236 (346)
Q Consensus       227 DiV~~~lPlt  236 (346)
                      |+|++++|..
T Consensus        90 D~V~I~tp~~   99 (361)
T 3u3x_A           90 GLIVSAAVSS   99 (361)
T ss_dssp             CEEEECCCHH
T ss_pred             CEEEEeCChH
Confidence            9999999843

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.09  E-value=0.014  Score=57.13  Aligned_cols=74  Identities=15%  Similarity=0.121  Sum_probs=46.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCcC----CHHHHhh--c
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE----DIFEFAS--K  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~ell~--~  225 (346)
                      .+|||||+|.||+..++.++.. |++|. ++|++..+.......   +. +.+     ......+.    +++++++  +
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~---~~-~~g-----~~~~~~~~~~~~~~~~ll~~~~   91 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEI---LK-KNG-----KKPAKVFGNGNDDYKNMLKDKN   91 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHH---HH-HTT-----CCCCEEECSSTTTHHHHTTCTT
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHH---HH-hcC-----CCCCceeccCCCCHHHHhcCCC
Confidence            4899999999999999988765 78865 667764331110000   00 000     00000134    8999997  5


Q ss_pred             CCEEEEeecCC
Q 019081          226 ADVVVCCLSLN  236 (346)
Q Consensus       226 aDiV~~~lPlt  236 (346)
                      .|+|++++|..
T Consensus        92 vD~V~i~tp~~  102 (444)
T 2ixa_A           92 IDAVFVSSPWE  102 (444)
T ss_dssp             CCEEEECCCGG
T ss_pred             CCEEEEcCCcH
Confidence            89999999843

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.08  E-value=0.081  Score=51.70  Aligned_cols=88  Identities=14%  Similarity=0.200  Sum_probs=64.3

Q ss_pred             ccCCCeEEEEecC----------HHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC
Q 019081          150 TLLGKTVFILGFG----------NIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED  218 (346)
Q Consensus       150 ~l~g~tvgIiG~G----------~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (346)
                      .+.|++|+|+|+-          .-...+++.|... |++|.+|||.....                        ....+
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~------------------------~~~~~  367 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD------------------------FVEHD  367 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT------------------------TBCST
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc------------------------cccCC
Confidence            4789999999974          3468899999998 99999999864321                        01246


Q ss_pred             HHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          219 IFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       219 l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      +++.++.||+|+++++-. +-+. ++.+.++.|+ +.+++++ |+-+
T Consensus       368 ~~~~~~~ad~vvi~t~~~-~f~~-~d~~~~~~~~-~~~i~D~-r~~~  410 (431)
T 3ojo_A          368 MSHAVKDASLVLILSDHS-EFKN-LSDSHFDKMK-HKVIFDT-KNVV  410 (431)
T ss_dssp             THHHHTTCSEEEECSCCG-GGTS-CCGGGGTTCS-SCEEEES-SCCC
T ss_pred             HHHHHhCCCEEEEecCCH-HHhc-cCHHHHHhCC-CCEEEEC-CCCC
Confidence            789999999999998743 3233 3555566777 6788886 5443

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=95.07  E-value=0.021  Score=51.40  Aligned_cols=71  Identities=15%  Similarity=0.203  Sum_probs=49.0

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEE
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  229 (346)
                      .+|++.|.| .|.||+.+++.|...|++|++.+|+........             ..... ......++.++++..|+|
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~-------------~~~~~~Dl~d~~~~~~~~~~~D~v   68 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPN-------------EECVQCDLADANAVNAMVAGCDGI   68 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTT-------------EEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCC-------------CEEEEcCCCCHHHHHHHHcCCCEE
Confidence            467899999 699999999999999999999998764321000             00000 011234577888999999


Q ss_pred             EEeecC
Q 019081          230 VCCLSL  235 (346)
Q Consensus       230 ~~~lPl  235 (346)
                      +.+.-.
T Consensus        69 i~~Ag~   74 (267)
T 3rft_A           69 VHLGGI   74 (267)
T ss_dssp             EECCSC
T ss_pred             EECCCC
Confidence            877543

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=95.07  E-value=0.089  Score=52.10  Aligned_cols=122  Identities=20%  Similarity=0.230  Sum_probs=69.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccc----ccccchhhhccccccccccccCCcCCHHHHh-h
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV----SCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-S  224 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~  224 (346)
                      +|.|+||.|-|+|++|+..|+.|..+|++|+++..+......+    ......+....+-+...... ....+  +++ .
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a-~~~~~--~il~~  317 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKA-KIYEG--SILEV  317 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTS-EEECS--CGGGS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCc-eeecc--ccccc
Confidence            5899999999999999999999999999998743211100000    00000000000000000000 00011  333 5


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      .|||++-|.     +.+.|+.+...+++ -.+++--+-+++ ..++ .+.|++..|..
T Consensus       318 ~~DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p~-T~eA-~~iL~~rGIl~  367 (501)
T 3mw9_A          318 DCDILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGPT-TPEA-DKIFLERNIMV  367 (501)
T ss_dssp             CCSEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTCEE
T ss_pred             cceEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCcC-CHHH-HHHHHHCCCEE
Confidence            799988764     44678888877776 456777788874 4443 46777766653

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=95.04  E-value=0.027  Score=52.56  Aligned_cols=108  Identities=19%  Similarity=0.196  Sum_probs=68.5

Q ss_pred             ccCCCeEEEE-ec-CHHHHHHHHHHccCCCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--
Q 019081          150 TLLGKTVFIL-GF-GNIGVELAKRLRPFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--  224 (346)
Q Consensus       150 ~l~g~tvgIi-G~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  224 (346)
                      -+..+++.|| |+ |+.|+.+++.++..|++++ .+|+......  .              ....   .+.+++|+.+  
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~--i--------------~G~~---vy~sl~el~~~~   70 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT--H--------------LGLP---VFNTVKEAKEQT   70 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE--E--------------TTEE---EESSHHHHHHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcce--E--------------CCee---eechHHHhhhcC
Confidence            3566789999 99 9999999999999999944 5555421100  0              0011   2457899888  


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCC-cEEEEcCCCCCC-CHHHHHHHHHhC-CCe
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIARGGLL-DYEAIAHYLECG-HLG  281 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~g-ailIN~sRg~~v-d~~aL~~aL~~g-~i~  281 (346)
                      ..|++++++|. +.....+.+- +   +.| ..+|+.+-|-.. ++..|.+..++. .+.
T Consensus        71 ~vD~avI~vP~-~~~~~~~~e~-i---~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           71 GATASVIYVPP-PFAAAAINEA-I---DAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             CCCEEEECCCH-HHHHHHHHHH-H---HTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             CCCEEEEecCH-HHHHHHHHHH-H---HCCCCEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            89999999994 3333333322 2   223 234667666422 344788888877 553

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.04  E-value=0.0062  Score=57.72  Aligned_cols=66  Identities=12%  Similarity=0.168  Sum_probs=43.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccC--------CCEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHH
Q 019081          154 KTVFILGFGNIGVELAKRLRPF--------GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFE  221 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~--------G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~e  221 (346)
                      -+|||||+|.||+.-++.++..        +++|. ++|++..+..                 ....+++   .+.++++
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~-----------------~~a~~~g~~~~~~d~~~   69 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVR-----------------AAAGKLGWSTTETDWRT   69 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHH-----------------HHHHHHTCSEEESCHHH
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHH-----------------HHHHHcCCCcccCCHHH
Confidence            3899999999999877665432        34655 4676543311                 1112222   2478999


Q ss_pred             Hhh--cCCEEEEeecCC
Q 019081          222 FAS--KADVVVCCLSLN  236 (346)
Q Consensus       222 ll~--~aDiV~~~lPlt  236 (346)
                      +++  +.|+|++++|..
T Consensus        70 ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A           70 LLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             HTTCTTCSEEEECSCGG
T ss_pred             HhcCCCCCEEEEeCChH
Confidence            995  479999999854

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.03  E-value=0.018  Score=55.45  Aligned_cols=97  Identities=21%  Similarity=0.240  Sum_probs=58.9

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----  224 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----  224 (346)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++.+++..+......  .+       .+...+.  ...++.+.+.     
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~--lG-------a~~vi~~--~~~~~~~~i~~~t~g  280 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE--LG-------ADHVIDP--TKENFVEAVLDYTNG  280 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH--HT-------CSEEECT--TTSCHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH--cC-------CCEEEcC--CCCCHHHHHHHHhCC
Confidence            358899999999999999999999999 89999876543211000  00       0001100  1123333221     


Q ss_pred             -cCCEEEEeecCCccccCCCCHHHHccC----CCCcEEEEcCC
Q 019081          225 -KADVVVCCLSLNKQTAGIVNKSFLSSM----KKGSLLVNIAR  262 (346)
Q Consensus       225 -~aDiV~~~lPlt~~T~~li~~~~l~~m----k~gailIN~sR  262 (346)
                       ..|+|+-++.....+    -...++.+    +++..++.++-
T Consensus       281 ~g~D~vid~~g~~~~~----~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          281 LGAKLFLEATGVPQLV----WPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCCSEEEECSSCHHHH----HHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCCEEEECCCCcHHH----HHHHHHHHHhccCCCcEEEEeCC
Confidence             489999887643111    12233444    88988988864

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.00  E-value=0.015  Score=57.74  Aligned_cols=65  Identities=12%  Similarity=0.207  Sum_probs=46.4

Q ss_pred             CeEEEEec----CHHHHHHHHHHccC--CCEEE-EEcCCCccccccccccchhhhccccccccccccC-----CcCCHHH
Q 019081          154 KTVFILGF----GNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-----CHEDIFE  221 (346)
Q Consensus       154 ~tvgIiG~----G~IG~~vA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~e  221 (346)
                      .+|||||+    |.||+..++.++..  +++|+ ++|++..+..                 .....++     .+.++++
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~-----------------~~a~~~g~~~~~~~~d~~e  102 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSL-----------------QTIEQLQLKHATGFDSLES  102 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHH-----------------HHHHHTTCTTCEEESCHHH
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHH-----------------HHHHHcCCCcceeeCCHHH
Confidence            58999999    99999999988875  78865 6777543211                 1111111     2468999


Q ss_pred             Hhh--cCCEEEEeecC
Q 019081          222 FAS--KADVVVCCLSL  235 (346)
Q Consensus       222 ll~--~aDiV~~~lPl  235 (346)
                      +++  +.|+|++++|.
T Consensus       103 ll~~~~vD~V~I~tp~  118 (479)
T 2nvw_A          103 FAQYKDIDMIVVSVKV  118 (479)
T ss_dssp             HHHCTTCSEEEECSCH
T ss_pred             HhcCCCCCEEEEcCCc
Confidence            995  68999999984

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=94.94  E-value=0.027  Score=52.50  Aligned_cols=99  Identities=17%  Similarity=0.206  Sum_probs=58.1

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhcccccccccccc--CC-cCCHHHHhhcCCEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GC-HEDIFEFASKADVVV  230 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~l~ell~~aDiV~  230 (346)
                      +|+|||.|.+|..+|..+...|+ +|..+|++.......... ....      .......  .. ..+. +.+++||+|+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~d-l~~~------~~~~~~~~~i~~t~d~-~a~~~aD~Vi   72 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALD-LAHA------AAELGVDIRISGSNSY-EDMRGSDIVL   72 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHH-HHHH------HHHHTCCCCEEEESCG-GGGTTCSEEE
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHH-HHHh------hhhcCCCeEEEECCCH-HHhCCCCEEE
Confidence            58999999999999998876566 699999875432110000 0000      0000000  01 1455 6789999999


Q ss_pred             EeecCCccccCCCC-----------HH---HHccCCCCcEEEEcCC
Q 019081          231 CCLSLNKQTAGIVN-----------KS---FLSSMKKGSLLVNIAR  262 (346)
Q Consensus       231 ~~lPlt~~T~~li~-----------~~---~l~~mk~gailIN~sR  262 (346)
                      +..+. +...|+--           ++   .+....|++++|+++-
T Consensus        73 ~~ag~-~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           73 VTAGI-GRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             ECCSC-CCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EeCCC-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            99774 33344311           11   2333358999999854

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=94.94  E-value=0.075  Score=50.36  Aligned_cols=93  Identities=16%  Similarity=0.092  Sum_probs=52.7

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEE
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  230 (346)
                      .+|||+| .|.||+.+.+.|.... ++++.+.+....... ..  ..+.       .+.. ......++++ +..+|+|+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~-~~--~~~~-------~~~g~~~~~~~~~~~-~~~vDvV~   73 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEP-VH--FVHP-------NLRGRTNLKFVPPEK-LEPADILV   73 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSB-GG--GTCG-------GGTTTCCCBCBCGGG-CCCCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCch-hH--HhCc-------hhcCcccccccchhH-hcCCCEEE
Confidence            4899999 7999999999987554 587776543221100 00  0000       0000 0001223444 47899999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      .++|.... ..+.  .  ..++.|+.+|+.|-
T Consensus        74 ~a~g~~~s-~~~a--~--~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           74 LALPHGVF-AREF--D--RYSALAPVLVDLSA  100 (345)
T ss_dssp             ECCCTTHH-HHTH--H--HHHTTCSEEEECSS
T ss_pred             EcCCcHHH-HHHH--H--HHHHCCCEEEEcCc
Confidence            99986432 1111  1  22467889999875

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=94.94  E-value=0.03  Score=50.07  Aligned_cols=40  Identities=20%  Similarity=0.317  Sum_probs=32.4

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .+--+|++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus        18 ~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~   58 (251)
T 3orf_A           18 GSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP   58 (251)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            3445889999996 689999999999999999999987654

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=94.91  E-value=0.033  Score=51.38  Aligned_cols=60  Identities=17%  Similarity=0.172  Sum_probs=42.5

Q ss_pred             CeEEEEecCHHHHHHHHHHcc----CCCEEE-EEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhh--c
Q 019081          154 KTVFILGFGNIGVELAKRLRP----FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS--K  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~----~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~--~  225 (346)
                      .+|||||+|.||+..++.+..    -+++++ ++|++...                      ...+ ...+++++++  +
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----------------------~~~g~~~~~~~ell~~~~   65 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----------------------SLDEVRQISLEDALRSQE   65 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----------------------EETTEEBCCHHHHHHCSS
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----------------------HHcCCCCCCHHHHhcCCC
Confidence            489999999999999988865    367766 45553211                      0001 1358999996  6


Q ss_pred             CCEEEEeecC
Q 019081          226 ADVVVCCLSL  235 (346)
Q Consensus       226 aDiV~~~lPl  235 (346)
                      .|+|++++|.
T Consensus        66 vD~V~i~tp~   75 (294)
T 1lc0_A           66 IDVAYICSES   75 (294)
T ss_dssp             EEEEEECSCG
T ss_pred             CCEEEEeCCc
Confidence            7999999984

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=94.89  E-value=0.25  Score=46.32  Aligned_cols=93  Identities=8%  Similarity=-0.035  Sum_probs=61.6

Q ss_pred             ccCCCeEEE-----EecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081          150 TLLGKTVFI-----LGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgI-----iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (346)
                      .+. .+|++     +|=+++.++.+..+..||++|.+..|..-....                ..........++++.++
T Consensus       166 ~l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~----------------~~~~~~~~~~d~~eav~  228 (324)
T 1js1_X          166 RPK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDP----------------KFVGNARVEYDQMKAFE  228 (324)
T ss_dssp             SCE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCH----------------HHHTTCEEESCHHHHHT
T ss_pred             Cee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCCh----------------hhccceEEECCHHHHhC
Confidence            466 89999     999999999999999999999998764322100                01001112468999999


Q ss_pred             cCCEEEEeec-CCc----------cccCCCCHHHHccCCCCcEEEEc
Q 019081          225 KADVVVCCLS-LNK----------QTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       225 ~aDiV~~~lP-lt~----------~T~~li~~~~l~~mk~gailIN~  260 (346)
                      ++|+|..-.= .-.          .....++.+.++++| +++|.-+
T Consensus       229 ~aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~e~l~~a~-~ai~MHc  274 (324)
T 1js1_X          229 GADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTN-NAYFMHC  274 (324)
T ss_dssp             TCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHHHTTSS-SCEEECC
T ss_pred             CCCEEEecCcccCCCccccchHHHhcCcccCHHHHHhcC-CcEEECC
Confidence            9999987322 100          012455666666666 6666555

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.88  E-value=0.047  Score=49.64  Aligned_cols=34  Identities=26%  Similarity=0.256  Sum_probs=30.8

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +++|.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence            578999996 9999999999998899999999875

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=94.86  E-value=0.17  Score=47.19  Aligned_cols=70  Identities=19%  Similarity=0.196  Sum_probs=48.7

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHH
Q 019081          150 TLLGKTVFILGF---GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  221 (346)
Q Consensus       150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  221 (346)
                      .+.|.+|++||=   |++.++++..+..| |++|.+..|..-..+..            +. +...+.+    ...++++
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~------------~~-~~~~~~g~~~~~~~d~~e  214 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKD------------II-EDLKAKNIKFYEKESLDD  214 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHH------------HH-HHHHHTTCCEEEESCGGG
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHH------------HH-HHHHHcCCEEEEEcCHHH
Confidence            478999999998   58999999999999 99999887632111100            00 0011111    1368999


Q ss_pred             HhhcCCEEEEe
Q 019081          222 FASKADVVVCC  232 (346)
Q Consensus       222 ll~~aDiV~~~  232 (346)
                      .++++|+|...
T Consensus       215 av~~aDvvy~~  225 (306)
T 4ekn_B          215 LDDDIDVLYVT  225 (306)
T ss_dssp             CCTTCSEEEEC
T ss_pred             HhcCCCEEEeC
Confidence            99999999864

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.86  E-value=0.032  Score=52.67  Aligned_cols=96  Identities=19%  Similarity=0.217  Sum_probs=59.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHh----
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFA----  223 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell----  223 (346)
                      .|++|.|+|.|.+|...++.++.+|++ |++.+++..+..... .. .        +.......   ...++.+.+    
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-~--------~~~~~~~~~~~~~~~~~~~v~~~t  248 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAK-EI-C--------PEVVTHKVERLSAEESAKKIVESF  248 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HH-C--------TTCEEEECCSCCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-c--------hhcccccccccchHHHHHHHHHHh
Confidence            578999999999999999999999998 999887654321100 00 0        00000000   011222222    


Q ss_pred             --hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          224 --SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       224 --~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                        ...|+|+-++... .+    -...++.++++..+|.++-
T Consensus       249 ~g~g~Dvvid~~g~~-~~----~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          249 GGIEPAVALECTGVE-SS----IAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             SSCCCSEEEECSCCH-HH----HHHHHHHSCTTCEEEECCC
T ss_pred             CCCCCCEEEECCCCh-HH----HHHHHHHhcCCCEEEEEcc
Confidence              2479999887532 11    2456778999999999864

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=94.85  E-value=0.023  Score=45.72  Aligned_cols=99  Identities=19%  Similarity=0.191  Sum_probs=66.3

Q ss_pred             CeEEEEec----CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      ++++|||.    |+.|..+.+.|+..|++|+-+++....-                  ....   .+.++.++-. -|++
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i------------------~G~~---~y~sl~dlp~-vDla   62 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV------------------LGKT---IINERPVIEG-VDTV   62 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE------------------TTEE---CBCSCCCCTT-CCEE
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC------------------CCee---ccCChHHCCC-CCEE
Confidence            68999998    5689999999999999999998754321                  1111   2345555555 8999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ++++|. +.+..++.+-.  .+...+++++.  |-  .++++.+..++..|.
T Consensus        63 vi~~p~-~~v~~~v~e~~--~~g~k~v~~~~--G~--~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           63 TLYINP-QNQLSEYNYIL--SLKPKRVIFNP--GT--ENEELEEILSENGIE  107 (122)
T ss_dssp             EECSCH-HHHGGGHHHHH--HHCCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             EEEeCH-HHHHHHHHHHH--hcCCCEEEECC--CC--ChHHHHHHHHHcCCe
Confidence            999994 55556654322  23444666554  32  356777877777665

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=94.83  E-value=0.081  Score=48.39  Aligned_cols=39  Identities=28%  Similarity=0.295  Sum_probs=34.9

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .++.||++.|.|. |.||+++|+.|...|++|++.+++..
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4689999999996 78999999999999999999988653

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.82  E-value=0.011  Score=55.38  Aligned_cols=94  Identities=16%  Similarity=0.170  Sum_probs=57.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh----cCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS----KAD  227 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~aD  227 (346)
                      .|++|.|+|.|.||...++.++.+|++|++.+++..+......  .+       .+...+.  ...++.+.+.    ..|
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~--lG-------a~~~i~~--~~~~~~~~~~~~~g~~d  234 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR--LG-------AEVAVNA--RDTDPAAWLQKEIGGAH  234 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH--TT-------CSEEEET--TTSCHHHHHHHHHSSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH--cC-------CCEEEeC--CCcCHHHHHHHhCCCCC
Confidence            5789999999999999999999999999999886543211000  00       0000100  1123333332    568


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +|+.++... +    .-...++.++++..++.++
T Consensus       235 ~vid~~g~~-~----~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          235 GVLVTAVSP-K----AFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             EEEESSCCH-H----HHHHHHHHEEEEEEEEECS
T ss_pred             EEEEeCCCH-H----HHHHHHHHhccCCEEEEeC
Confidence            887765422 1    1234566778888888875

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.75  E-value=0.018  Score=54.40  Aligned_cols=101  Identities=17%  Similarity=0.254  Sum_probs=56.0

Q ss_pred             eEEEEecCHHHHHHHHHHccC---------CCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh
Q 019081          155 TVFILGFGNIGVELAKRLRPF---------GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS  224 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~---------G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  224 (346)
                      +|||||+|.||+.+++.+...         +++|. ++|++..+..                 .. .......++++++ 
T Consensus         5 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~-----------------~~-~~~~~~~d~~~ll-   65 (332)
T 2ejw_A            5 KIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR-----------------AI-PQELLRAEPFDLL-   65 (332)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC-----------------SS-CGGGEESSCCCCT-
T ss_pred             EEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh-----------------cc-CcccccCCHHHHh-
Confidence            799999999999999987654         46664 4566533210                 00 0000124667777 


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHHHHHhC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECG  278 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g  278 (346)
                      +.|+|+.+.|......    .-..+.++.|--+|...-..+ -.-++|.++-++.
T Consensus        66 ~iDvVve~t~~~~~a~----~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           66 EADLVVEAMGGVEAPL----RLVLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             TCSEEEECCCCSHHHH----HHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             CCCEEEECCCCcHHHH----HHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            8999999987432111    011123444544444211111 2445666666655

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.74  E-value=0.019  Score=54.06  Aligned_cols=37  Identities=35%  Similarity=0.540  Sum_probs=33.4

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .|++|.|+|. |.||...++.++.+|++|++.+++..+
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~  196 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAA  196 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            5889999998 999999999999999999999986543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.71  E-value=0.014  Score=55.64  Aligned_cols=95  Identities=26%  Similarity=0.297  Sum_probs=58.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc-----
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK-----  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-----  225 (346)
                      .|++|.|+|.|.+|...++.++.+|+ +|++.+++..+......  .+       .+...+  ....++.+.+.+     
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~--lG-------a~~vi~--~~~~~~~~~i~~~~~~~  250 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE--VG-------ATATVD--PSAGDVVEAIAGPVGLV  250 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH--HT-------CSEEEC--TTSSCHHHHHHSTTSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH--cC-------CCEEEC--CCCcCHHHHHHhhhhcc
Confidence            47899999999999999999999999 89999876543110000  00       000000  012344444433     


Q ss_pred             ---CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          226 ---ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       226 ---aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                         .|+|+-++.. +.    .-...++.++++..++.++-
T Consensus       251 ~gg~Dvvid~~G~-~~----~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          251 PGGVDVVIECAGV-AE----TVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TTCEEEEEECSCC-HH----HHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEECCCC-HH----HHHHHHHHhccCCEEEEEec
Confidence               6888877642 11    12345667788888887763

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=94.69  E-value=0.025  Score=51.03  Aligned_cols=41  Identities=29%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ...+.+|++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus        23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   64 (260)
T 3un1_A           23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKP   64 (260)
T ss_dssp             HHHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            35688999999986 789999999999999999999987543

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=94.67  E-value=0.016  Score=56.21  Aligned_cols=71  Identities=17%  Similarity=0.119  Sum_probs=44.9

Q ss_pred             CeEEEEecCH---HHHHHHHHHccCC-CEEE--EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc--
Q 019081          154 KTVFILGFGN---IGVELAKRLRPFG-VKII--ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--  225 (346)
Q Consensus       154 ~tvgIiG~G~---IG~~vA~~l~~~G-~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--  225 (346)
                      .+|||||+|.   ||+..+..++..+ ++++  ++|++..+.......   +         .......+.++++++++  
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~---~---------g~~~~~~~~~~~~ll~~~~  105 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRE---L---------GLDPSRVYSDFKEMAIREA  105 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHH---H---------TCCGGGBCSCHHHHHHHHH
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH---c---------CCCcccccCCHHHHHhccc
Confidence            4899999999   9999888776554 6776  457765432110000   0         00000124689999976  


Q ss_pred             -----CCEEEEeecCC
Q 019081          226 -----ADVVVCCLSLN  236 (346)
Q Consensus       226 -----aDiV~~~lPlt  236 (346)
                           .|+|++++|..
T Consensus       106 ~~~~~vD~V~I~tp~~  121 (417)
T 3v5n_A          106 KLKNGIEAVAIVTPNH  121 (417)
T ss_dssp             HCTTCCSEEEECSCTT
T ss_pred             ccCCCCcEEEECCCcH
Confidence                 89999999954

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.64  E-value=0.057  Score=49.12  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=31.2

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .++|.|+|. |.||+.+++.|...|++|++.+|+..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   39 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   39 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcc
Confidence            468999996 99999999999999999999998753

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.64  E-value=0.012  Score=54.87  Aligned_cols=95  Identities=18%  Similarity=0.147  Sum_probs=59.0

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+|. |.||..+++.++..|++|++.+++..+.... ..   +    + .+...+. ....++.+.+.     .
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~---~----g-~~~~~d~-~~~~~~~~~~~~~~~~~  214 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQ---I----G-FDAAFNY-KTVNSLEEALKKASPDG  214 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HH---T----T-CSEEEET-TSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hh---c----C-CcEEEec-CCHHHHHHHHHHHhCCC
Confidence            5889999998 9999999999999999999998764321100 00   0    0 0000000 01134444332     3


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      .|+|+.+...  .+    -...++.++++..+|.++-
T Consensus       215 ~d~vi~~~g~--~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          215 YDCYFDNVGG--EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEEEESSCH--HH----HHHHHTTEEEEEEEEECCC
T ss_pred             CeEEEECCCh--HH----HHHHHHHHhcCCEEEEEec
Confidence            6888777642  11    2556777888888888863

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=94.63  E-value=0.023  Score=53.82  Aligned_cols=31  Identities=39%  Similarity=0.463  Sum_probs=27.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEE-cC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIAT-KR  184 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~-d~  184 (346)
                      -+|||.|+|+||+.+++.+..+|++|+++ |+
T Consensus         8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp   39 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDP   39 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             eEEEEECCChHHHHHHHHHHhCCCEEEEEeCC
Confidence            48999999999999999999899998884 54

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=94.60  E-value=0.046  Score=52.72  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=32.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .-..+++|+|+|-|..|+.+++.++.+|++|+++| ..
T Consensus        20 ~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~   56 (403)
T 3k5i_A           20 HMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD   56 (403)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence            33568999999999999999999999999999999 54

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=94.59  E-value=0.3  Score=46.41  Aligned_cols=102  Identities=11%  Similarity=0.054  Sum_probs=64.6

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  224 (346)
                      .+.|.+|++||= +++.++++..+..||++|.+..|..-..+.....   .      ........+    ...+++ .++
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~---~------~~~~a~~~G~~v~~~~d~~-av~  219 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQA---K------LAKNCEVSGGSFLVTDDAS-SVE  219 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHH---H------HHHHHHHHSCEEEEECCGG-GGT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHH---H------HHHHHHHcCCeEEEECCHH-HHc
Confidence            588999999996 6888899999999999999987643221100000   0      000001111    236788 999


Q ss_pred             cCCEEEEee----cCCcc---------c-cCCCCHHHHccCCCCcEEEEcC
Q 019081          225 KADVVVCCL----SLNKQ---------T-AGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       225 ~aDiV~~~l----Plt~~---------T-~~li~~~~l~~mk~gailIN~s  261 (346)
                      ++|+|..-+    .-.++         . ..-++.+.++++|++++|.-+.
T Consensus       220 ~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          220 GADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             TCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             CCCEEEecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence            999998632    10010         1 2557888888888888887774

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.59  E-value=0.037  Score=51.81  Aligned_cols=114  Identities=19%  Similarity=0.138  Sum_probs=64.4

Q ss_pred             CCeEEEEecCHHHHH-HHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh-hcCCEEE
Q 019081          153 GKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVV  230 (346)
Q Consensus       153 g~tvgIiG~G~IG~~-vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~  230 (346)
                      .+++.|||.|.+|.+ +|+.|+..|++|.++|.+..........           ...+.-... .+.+++. .++|+|+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~-----------~~gi~v~~g-~~~~~l~~~~~d~vV   71 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLE-----------ALGIDVYEG-FDAAQLDEFKADVYV   71 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHH-----------HTTCEEEES-CCGGGGGSCCCSEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHH-----------hCCCEEECC-CCHHHcCCCCCCEEE
Confidence            478999999999995 9999999999999999864321100000           000000001 2334444 4799998


Q ss_pred             Ee--ecCC-cc-----cc--CCCCHH-HHcc-C-CCC-cEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          231 CC--LSLN-KQ-----TA--GIVNKS-FLSS-M-KKG-SLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       231 ~~--lPlt-~~-----T~--~li~~~-~l~~-m-k~g-ailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      ..  +|.+ |.     -+  .++++- .|.. + +.. .+-|-=+.|..-...=+...|+..
T Consensus        72 ~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           72 IGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             ECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             ECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            85  3322 21     12  234433 3443 3 322 334444577776666666777753

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.55  E-value=0.037  Score=48.57  Aligned_cols=75  Identities=19%  Similarity=0.093  Sum_probs=49.5

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHccC--CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcC
Q 019081          151 LLGKTVFILG-FGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKA  226 (346)
Q Consensus       151 l~g~tvgIiG-~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~a  226 (346)
                      ..++++.|.| .|.||+.+++.|...  |++|++.+|+..+.....         .+  ..... ......++.++++.+
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~---------~~--~~~~~~D~~d~~~~~~~~~~~   70 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG---------GE--ADVFIGDITDADSINPAFQGI   70 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT---------CC--TTEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcC---------CC--eeEEEecCCCHHHHHHHHcCC
Confidence            3578999999 699999999999988  899999998643210000         00  00000 001234577888999


Q ss_pred             CEEEEeecCC
Q 019081          227 DVVVCCLSLN  236 (346)
Q Consensus       227 DiV~~~lPlt  236 (346)
                      |+|+.+....
T Consensus        71 d~vi~~a~~~   80 (253)
T 1xq6_A           71 DALVILTSAV   80 (253)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEEecccc
Confidence            9999877543

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=94.54  E-value=0.093  Score=51.06  Aligned_cols=127  Identities=20%  Similarity=0.124  Sum_probs=70.6

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEE-EEcCCCccc-cc--cccccchhhhcccc--cccccccc-CCcC-CH
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASH-SQ--VSCQSSALAVKNGI--IDDLVDEK-GCHE-DI  219 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~~~~-~~--~~~~~~~~~~~~~~--~~~~~~~~-~~~~-~l  219 (346)
                      +.++.|++|.|.|+|++|+.+|+.|..+|++|+ +.|.+..-. +.  .......+.-..+-  +.+..... .... +-
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            467999999999999999999999999999998 444421100 00  00000000000000  00000000 0011 22


Q ss_pred             HHHh-hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          220 FEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       220 ~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      ++++ ..||+++-|.     +.+.|+.+...+++ =-+++--+-+++ ..++ .+.|.+..|.-
T Consensus       285 ~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi~~  340 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAA-----IENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVVV  340 (421)
T ss_dssp             TGGGGCCCSEEEECS-----CSSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCEE
T ss_pred             hhhhcCCccEEEecC-----cCCccchhhHHHcC-ceEEEecCCCcC-CHHH-HHHHHHCCCEE
Confidence            3444 5799998875     34567777766674 346667777775 3443 46677776653

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.48  E-value=0.031  Score=52.25  Aligned_cols=34  Identities=26%  Similarity=0.257  Sum_probs=26.2

Q ss_pred             CeEEEEecCHHHHHHHHHHc--cCCCEEE-EEcCCCc
Q 019081          154 KTVFILGFGNIGVELAKRLR--PFGVKII-ATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~--~~G~~V~-~~d~~~~  187 (346)
                      .+|||||+|.||+.+++.+.  .-++++. ++|++..
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~   41 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAA   41 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTT
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChh
Confidence            48999999999999999883  4577754 5676543

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=94.46  E-value=0.077  Score=49.95  Aligned_cols=116  Identities=16%  Similarity=0.198  Sum_probs=66.6

Q ss_pred             eEEEEecCHHHHHHHHHHcc---------CCCEEEEE-cCCCccccc-cccccchhhhccccccccccccCCc--CCHHH
Q 019081          155 TVFILGFGNIGVELAKRLRP---------FGVKIIAT-KRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKGCH--EDIFE  221 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~---------~G~~V~~~-d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~e  221 (346)
                      +|||+|+|.||+.+++.+..         .+.+|.++ |++...... ....+.         ..........  .++++
T Consensus         4 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~---------~~~~~~~~~~~~~d~~~   74 (327)
T 3do5_A            4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEAL---------RMKRETGMLRDDAKAIE   74 (327)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHH---------HHHHHHSSCSBCCCHHH
T ss_pred             EEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHH---------hhhccCccccCCCCHHH
Confidence            79999999999999998865         47777654 554322100 000000         0000000012  38999


Q ss_pred             Hhh--cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCC-CHHHHHHHHHhCCC
Q 019081          222 FAS--KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL-DYEAIAHYLECGHL  280 (346)
Q Consensus       222 ll~--~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~v-d~~aL~~aL~~g~i  280 (346)
                      ++.  +.|+|+.++|....+.. .-.-....++.|.-+|...-+.+. ..+.|.++.++...
T Consensus        75 ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~  135 (327)
T 3do5_A           75 VVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV  135 (327)
T ss_dssp             HHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC
T ss_pred             HhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC
Confidence            985  48999999985422111 112235557888777776444443 45677777776655

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.45  E-value=0.027  Score=55.20  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=35.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .++.||+|.|||+|..|.++|+.|+..|++|.++|.+.
T Consensus         5 ~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            35789999999999999999999999999999999864

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.43  E-value=0.19  Score=45.25  Aligned_cols=38  Identities=24%  Similarity=0.181  Sum_probs=34.3

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCC
Q 019081          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      ...+.||++.|.|. |.||+++|+.|...|++|++.+++
T Consensus         5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            35689999999996 589999999999999999999886

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.42  E-value=0.13  Score=50.90  Aligned_cols=108  Identities=18%  Similarity=0.210  Sum_probs=68.9

Q ss_pred             cccCCCeEEEEecC----------HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc------cc
Q 019081          149 ETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV------DE  212 (346)
Q Consensus       149 ~~l~g~tvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  212 (346)
                      ..+.|++|+|+|+-          .-...+++.|...|++|.+|||...........           ....      ..
T Consensus       331 ~~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~-----------~~~~~~~~~~~~  399 (481)
T 2o3j_A          331 NTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDL-----------ASVTSAQDVERL  399 (481)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHH-----------HHHSCHHHHHHH
T ss_pred             cccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHH-----------HhhhccccccCc
Confidence            35899999999974          467889999999999999999865321000000           0000      00


Q ss_pred             cCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHH-ccCCCCcEEEEcCCCCCCCHHHH
Q 019081          213 KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL-SSMKKGSLLVNIARGGLLDYEAI  271 (346)
Q Consensus       213 ~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l-~~mk~gailIN~sRg~~vd~~aL  271 (346)
                      .....++.+.++.+|+|++++.-. +-+. ++.+.+ +.|+...+++++ |+ ++|.+.+
T Consensus       400 ~~~~~~~~~~~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          400 ITVESDPYAAARGAHAIVVLTEWD-EFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             EEEESSHHHHHTTCSEEEECSCCG-GGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             eeecCCHHHHHcCCCEEEEcCCcH-Hhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            001146788899999999998743 3222 355544 457776688887 44 4565544

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=94.42  E-value=0.014  Score=57.14  Aligned_cols=66  Identities=14%  Similarity=0.125  Sum_probs=46.8

Q ss_pred             CeEEEEec----CHHHHHHHHHHccC--CCEEE-EEcCCCccccccccccchhhhccccccccccccC-----CcCCHHH
Q 019081          154 KTVFILGF----GNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-----CHEDIFE  221 (346)
Q Consensus       154 ~tvgIiG~----G~IG~~vA~~l~~~--G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~e  221 (346)
                      .+|||||+    |.||+..++.++..  +++++ ++|++..+..                 .....++     .+.++++
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~-----------------~~a~~~g~~~~~~~~~~~~   83 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSI-----------------ATIQRLKLSNATAFPTLES   83 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHH-----------------HHHHHTTCTTCEEESSHHH
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHH-----------------HHHHHcCCCcceeeCCHHH
Confidence            48999999    99999999998876  78864 6777543211                 1111111     2468999


Q ss_pred             Hhh--cCCEEEEeecCC
Q 019081          222 FAS--KADVVVCCLSLN  236 (346)
Q Consensus       222 ll~--~aDiV~~~lPlt  236 (346)
                      +++  +.|+|++++|..
T Consensus        84 ll~~~~vD~V~i~tp~~  100 (438)
T 3btv_A           84 FASSSTIDMIVIAIQVA  100 (438)
T ss_dssp             HHHCSSCSEEEECSCHH
T ss_pred             HhcCCCCCEEEEeCCcH
Confidence            996  689999999843

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.42  E-value=0.013  Score=54.88  Aligned_cols=95  Identities=18%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+|. |.||..+++.++..|++|++.+++..+....... .+       .+...+.  ...++.+.+.     .
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-~g-------~~~~~~~--~~~~~~~~~~~~~~~~  218 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE-LG-------FDGAIDY--KNEDLAAGLKRECPKG  218 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TC-------CSEEEET--TTSCHHHHHHHHCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-cC-------CCEEEEC--CCHHHHHHHHHhcCCC
Confidence            5889999999 9999999999999999999999765431110000 00       0000000  1123333332     3


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      .|+|+.++..  .    .-...++.|+++..+|.++.
T Consensus       219 ~d~vi~~~g~--~----~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          219 IDVFFDNVGG--E----ILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             EEEEEESSCH--H----HHHHHHTTEEEEEEEEECCC
T ss_pred             ceEEEECCCc--c----hHHHHHHHHhhCCEEEEEee
Confidence            6887776542  1    23456677888888888764

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=94.41  E-value=0.022  Score=53.15  Aligned_cols=119  Identities=16%  Similarity=0.126  Sum_probs=65.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhcccccccccccc-CCcCCHHHHhhcCCEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~  230 (346)
                      .+|+|||.|.+|..++..+...+  -++..+|....+....... ..    +.  ....... ....+ .+.+++||+|+
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~d-l~----~~--~~~~~~~~v~~~~-~~a~~~aD~Vi   72 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAED-IL----HA--TPFAHPVWVWAGS-YGDLEGARAVV   72 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH-HH----TT--GGGSCCCEEEECC-GGGGTTEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHH-HH----Hh--HhhcCCeEEEECC-HHHhCCCCEEE
Confidence            47999999999999999887655  4899999864321100000 00    00  0000000 01123 56689999999


Q ss_pred             EeecCCccccCCC-------CH-------HHHccCCCCcEEEEcCCCCCCC--HHHHHHH--HHhCCCeEE
Q 019081          231 CCLSLNKQTAGIV-------NK-------SFLSSMKKGSLLVNIARGGLLD--YEAIAHY--LECGHLGGL  283 (346)
Q Consensus       231 ~~lPlt~~T~~li-------~~-------~~l~~mk~gailIN~sRg~~vd--~~aL~~a--L~~g~i~ga  283 (346)
                      ++.+. +...++-       |.       +.+....|++++|+++  ..+|  ...+.+.  +...++-|.
T Consensus        73 i~ag~-~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~~t~~~~k~s~~p~~rviG~  140 (310)
T 2xxj_A           73 LAAGV-AQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT--NPVDVMTQVAYALSGLPPGRVVGS  140 (310)
T ss_dssp             ECCCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             ECCCC-CCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec--CchHHHHHHHHHHcCCCHHHEEec
Confidence            98874 3333431       11       1223336899999984  4444  3333333  233356554

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.36  E-value=0.036  Score=50.94  Aligned_cols=39  Identities=23%  Similarity=0.442  Sum_probs=35.7

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ..++.|++|.|||.|.+|.+.++.|...|++|+++++..
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            457899999999999999999999999999999998754

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.36  E-value=0.026  Score=52.90  Aligned_cols=89  Identities=17%  Similarity=0.134  Sum_probs=55.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcC---CHHHH-hhcCCE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE---DIFEF-ASKADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~el-l~~aDi  228 (346)
                      .+++.|+|+|.+|+.+++.|...|. |+++|+++.... ...  .          ...--.+...   .|+++ +++||.
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~--~----------~~~~i~gd~~~~~~L~~a~i~~a~~  180 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLR--S----------GANFVHGDPTRVSDLEKANVRGARA  180 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH--T----------TCEEEESCTTSHHHHHHTCSTTEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh--C----------CcEEEEeCCCCHHHHHhcChhhccE
Confidence            5689999999999999999999999 999998654321 000  0          0000112222   34444 678999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEE
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLL  257 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gail  257 (346)
                      |+++++..  ..++.-....+.+.+...+
T Consensus       181 vi~~~~~d--~~n~~~~~~ar~~~~~~~i  207 (336)
T 1lnq_A          181 VIVDLESD--SETIHCILGIRKIDESVRI  207 (336)
T ss_dssp             EEECCSSH--HHHHHHHHHHHTTCTTSEE
T ss_pred             EEEcCCcc--HHHHHHHHHHHHHCCCCeE
Confidence            99988743  2333334455556665333

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.35  E-value=0.016  Score=54.96  Aligned_cols=95  Identities=9%  Similarity=0.053  Sum_probs=57.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+|.|.||...++.++.+|+ +|++.+++..+......  .+       .+...+.  ...++.+.+.     .
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~--lG-------a~~vi~~--~~~~~~~~~~~~~~gg  258 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ--LG-------ATHVINS--KTQDPVAAIKEITDGG  258 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH--HT-------CSEEEET--TTSCHHHHHHHHTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH--cC-------CCEEecC--CccCHHHHHHHhcCCC
Confidence            57899999999999999999999999 69999876543110000  00       0000100  1123333222     3


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      .|+|+-++... .+    -...++.++++..++.++-
T Consensus       259 ~D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          259 VNFALESTGSP-EI----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEEEEECSCCH-HH----HHHHHHTEEEEEEEEECCC
T ss_pred             CcEEEECCCCH-HH----HHHHHHHHhcCCEEEEeCC
Confidence            68887776521 11    2455677888888887764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.34  E-value=0.015  Score=54.93  Aligned_cols=94  Identities=21%  Similarity=0.226  Sum_probs=59.0

Q ss_pred             CCCeEEEE-ecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIi-G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+ |.|.||..+++.++..|++|++.+++..+......  .+       .+...+  ....++.+.+.     .
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~--lG-------a~~~~~--~~~~~~~~~~~~~~~~g  235 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER--LG-------AKRGIN--YRSEDFAAVIKAETGQG  235 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--HT-------CSEEEE--TTTSCHHHHHHHHHSSC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh--cC-------CCEEEe--CCchHHHHHHHHHhCCC
Confidence            57899999 68999999999999999999999976543211000  00       000000  01123333332     4


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      .|+|+.++.. +     .-...++.++++..++.++.
T Consensus       236 ~Dvvid~~g~-~-----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          236 VDIILDMIGA-A-----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEEEESCCG-G-----GHHHHHHTEEEEEEEEECCC
T ss_pred             ceEEEECCCH-H-----HHHHHHHHhccCCEEEEEEe
Confidence            7888887653 1     22456777888888888863

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.34  E-value=0.22  Score=45.19  Aligned_cols=81  Identities=19%  Similarity=0.210  Sum_probs=48.6

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccc-cccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEE
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASH-SQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  229 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  229 (346)
                      .++|.|+|. |.||+.+++.|...|++|++.+|+.... +........+. ..+  ..... ......++.++++.+|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~-~~~--~~~~~~D~~d~~~l~~~~~~~d~v   80 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK-QLG--AKLIEASLDDHQRLVDALKQVDVV   80 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH-TTT--CEEECCCSSCHHHHHHHHTTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH-hCC--eEEEeCCCCCHHHHHHHHhCCCEE
Confidence            468999995 9999999999998999999999874321 00000000000 000  00000 001234577888899999


Q ss_pred             EEeecCC
Q 019081          230 VCCLSLN  236 (346)
Q Consensus       230 ~~~lPlt  236 (346)
                      +.+.+..
T Consensus        81 i~~a~~~   87 (313)
T 1qyd_A           81 ISALAGG   87 (313)
T ss_dssp             EECCCCS
T ss_pred             EECCccc
Confidence            8877643

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.30  E-value=0.086  Score=48.34  Aligned_cols=75  Identities=27%  Similarity=0.370  Sum_probs=47.0

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|.|+|. |.||+.+++.|...|++|++.+|+..........   +. ..+  ..... ......++.++++.+|+|+.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~---l~-~~~--v~~v~~Dl~d~~~l~~a~~~~d~vi~   85 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDE---FQ-SLG--AIIVKGELDEHEKLVELMKKVDVVIS   85 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHH---HH-HTT--CEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHH---hh-cCC--CEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            58999995 9999999999999999999999875321000000   00 000  00000 00123457788889999988


Q ss_pred             eec
Q 019081          232 CLS  234 (346)
Q Consensus       232 ~lP  234 (346)
                      +.+
T Consensus        86 ~a~   88 (318)
T 2r6j_A           86 ALA   88 (318)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            765

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=94.24  E-value=0.03  Score=53.10  Aligned_cols=110  Identities=16%  Similarity=0.144  Sum_probs=62.2

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccc--ccCCcCCHHHHhhc
Q 019081          151 LLGKTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFASK  225 (346)
Q Consensus       151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~  225 (346)
                      +.+++|+|||. |.||..+|..+..+|.  +|..+|..............         +..+.  ......++.+.+++
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~---------~~~~~~~~i~~t~d~~~al~d   76 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIR---------HCGFEGLNLTFTSDIKEALTD   76 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHH---------HHCCTTCCCEEESCHHHHHTT
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhh---------hCcCCCCceEEcCCHHHHhCC
Confidence            45789999998 9999999988877774  89999986432110000000         00000  00012578888999


Q ss_pred             CCEEEEeecCCccccCC-----C--CH-------HHHccCCCCcE-EEEcCCCCCCCHHHHH
Q 019081          226 ADVVVCCLSLNKQTAGI-----V--NK-------SFLSSMKKGSL-LVNIARGGLLDYEAIA  272 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~l-----i--~~-------~~l~~mk~gai-lIN~sRg~~vd~~aL~  272 (346)
                      ||+|+++.- ++...++     +  |.       +.+..-.|+++ +++++  ..+|.-..+
T Consensus        77 ADvVvitaG-~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs--NPvd~~t~i  135 (343)
T 3fi9_A           77 AKYIVSSGG-APRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF--NPADITGLV  135 (343)
T ss_dssp             EEEEEECCC--------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS--SSHHHHHHH
T ss_pred             CCEEEEccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec--CchHHHHHH
Confidence            999999853 3333333     1  11       12333357785 88985  555554433

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=94.21  E-value=0.056  Score=48.91  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=34.9

Q ss_pred             CccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          147 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ...++.||++.|.|. |.||+++|+.|...|++|++.+++...
T Consensus         8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~   50 (269)
T 3vtz_A            8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKS   50 (269)
T ss_dssp             --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            346789999999997 689999999999999999999987543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.19  E-value=0.02  Score=53.89  Aligned_cols=36  Identities=28%  Similarity=0.487  Sum_probs=32.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~  187 (346)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~  202 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKH  202 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHH
Confidence            57899999999999999999999999 7999987643

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=94.19  E-value=0.028  Score=53.10  Aligned_cols=106  Identities=15%  Similarity=0.101  Sum_probs=61.3

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-c-cCCcCCHHHHhhcCCE
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-E-KGCHEDIFEFASKADV  228 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~ell~~aDi  228 (346)
                      .++++.|.|. |.||+.+++.|...|++|++.+|+..........  .   ..+  ..... . .....++.++++.+|+
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~--~---~~~--v~~v~~D~l~d~~~l~~~~~~~d~   76 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQ--A---IPN--VTLFQGPLLNNVPLMDTLFEGAHL   76 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHH--T---STT--EEEEESCCTTCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHh--h---cCC--cEEEECCccCCHHHHHHHHhcCCE
Confidence            3678999995 9999999999988899999998865431000000  0   000  00000 0 1122357778899999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCC-C--cEEEEcCCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKK-G--SLLVNIARGG  264 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~-g--ailIN~sRg~  264 (346)
                      |+.+...............++.+++ |  ..||++|...
T Consensus        77 Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           77 AFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             EEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            9976653311112222344444432 3  4788887654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.17  E-value=0.02  Score=53.70  Aligned_cols=94  Identities=14%  Similarity=0.198  Sum_probs=58.0

Q ss_pred             CCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh------h
Q 019081          152 LGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA------S  224 (346)
Q Consensus       152 ~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  224 (346)
                      .|++|.|+|.| .||...++.++.+|++|++.+++..+......  .+       .+...+  ....++.+.+      .
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~--lg-------a~~~~~--~~~~~~~~~~~~~~~~~  212 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR--LG-------AAYVID--TSTAPLYETVMELTNGI  212 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH--HT-------CSEEEE--TTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh--CC-------CcEEEe--CCcccHHHHHHHHhCCC
Confidence            57899999998 99999999999999999999987654211000  00       000000  0112333322      1


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      ..|+|+.++.. +.+     ...+..++++..+|.++-
T Consensus       213 g~Dvvid~~g~-~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          213 GADAAIDSIGG-PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             CEEEEEESSCH-HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             CCcEEEECCCC-hhH-----HHHHHHhcCCCEEEEEee
Confidence            46888876642 221     334567888888888863

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=94.11  E-value=0.043  Score=53.85  Aligned_cols=80  Identities=11%  Similarity=0.215  Sum_probs=45.5

Q ss_pred             CeEEEEecCHHHHHHHHHHcc-CCCEEE-EEcCCCccccccccccchhhhcccc--------ccccccc--cCCcCCHHH
Q 019081          154 KTVFILGFGNIGVELAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGI--------IDDLVDE--KGCHEDIFE  221 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~l~e  221 (346)
                      -+|||||+|.||+.+++.+.. -|++|. ++|++..+........  |..++.+        +......  .....++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~--yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~ee  101 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTA--YGDEENAREATTESAMTRAIEAGKIAVTDDNDL  101 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHH--HSSSTTEEECSSHHHHHHHHHTTCEEEESCHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh--cCCccccccccchhhhhhhhccCCceEECCHHH
Confidence            489999999999999988764 477865 4566554321110000  0000000        0000000  012478999


Q ss_pred             Hhh--cCCEEEEeecC
Q 019081          222 FAS--KADVVVCCLSL  235 (346)
Q Consensus       222 ll~--~aDiV~~~lPl  235 (346)
                      +++  +.|+|++++|.
T Consensus       102 LL~d~dIDaVviaTp~  117 (446)
T 3upl_A          102 ILSNPLIDVIIDATGI  117 (446)
T ss_dssp             HHTCTTCCEEEECSCC
T ss_pred             HhcCCCCCEEEEcCCC
Confidence            997  58999999874

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=94.11  E-value=0.01  Score=58.83  Aligned_cols=127  Identities=13%  Similarity=0.112  Sum_probs=69.4

Q ss_pred             CCeEEEEecCHH-HHHHHHHHc----cC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          153 GKTVFILGFGNI-GVELAKRLR----PF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       153 g~tvgIiG~G~I-G~~vA~~l~----~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      ..+|+|||.|.. |.++|..|.    .+ +.+|..||+...........  ...+...  ...........++++.++.|
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~--~~~~l~~--~~~~~~I~~t~D~~eal~~A  103 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGA--CDVFIRE--KAPDIEFAATTDPEEAFTDV  103 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHH--HHHHHHH--HCTTSEEEEESCHHHHHSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHH--HHHHhcc--CCCCCEEEEECCHHHHHcCC
Confidence            459999999998 666665443    34 66899999875431110000  0000000  00000000135888999999


Q ss_pred             CEEEEeecCCcc---cc--------CCCC----------------------HHHHccCCCCcEEEEcCCCCCCCHHHHHH
Q 019081          227 DVVVCCLSLNKQ---TA--------GIVN----------------------KSFLSSMKKGSLLVNIARGGLLDYEAIAH  273 (346)
Q Consensus       227 DiV~~~lPlt~~---T~--------~li~----------------------~~~l~~mk~gailIN~sRg~~vd~~aL~~  273 (346)
                      |+|++++|....   ++        |++.                      .+.+....|+|++||++-.-=+-+.++.+
T Consensus       104 D~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k  183 (472)
T 1u8x_X          104 DFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRR  183 (472)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHH
T ss_pred             CEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHH
Confidence            999999985210   11        1110                      12344446899999997665444444444


Q ss_pred             HHHhCCCeEE
Q 019081          274 YLECGHLGGL  283 (346)
Q Consensus       274 aL~~g~i~ga  283 (346)
                      .....++-|.
T Consensus       184 ~~p~~rViG~  193 (472)
T 1u8x_X          184 LRPNSKILNI  193 (472)
T ss_dssp             HSTTCCEEEC
T ss_pred             hCCCCCEEEe
Confidence            4333356554

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.06  E-value=0.076  Score=49.80  Aligned_cols=78  Identities=19%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             cccCCCeEEEEe-cCHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhcccccccccc-ccC-CcCCHHHHhh
Q 019081          149 ETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKG-CHEDIFEFAS  224 (346)
Q Consensus       149 ~~l~g~tvgIiG-~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~ell~  224 (346)
                      ..+.+++|.|.| .|.||+.+++.|... |++|++++|+.......... ..        ..... ... ....+.++++
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~-~~--------v~~~~~Dl~~d~~~~~~~~~   90 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKH-ER--------MHFFEGDITINKEWVEYHVK   90 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGS-TT--------EEEEECCTTTCHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccC-CC--------eEEEeCccCCCHHHHHHHhc
Confidence            457789999999 699999999999887 99999999875432110000 00        00000 001 1234667888


Q ss_pred             cCCEEEEeecC
Q 019081          225 KADVVVCCLSL  235 (346)
Q Consensus       225 ~aDiV~~~lPl  235 (346)
                      .+|+|+.+...
T Consensus        91 ~~d~Vih~A~~  101 (372)
T 3slg_A           91 KCDVILPLVAI  101 (372)
T ss_dssp             HCSEEEECBCC
T ss_pred             cCCEEEEcCcc
Confidence            99999876543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.00  E-value=0.06  Score=50.02  Aligned_cols=39  Identities=26%  Similarity=0.283  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       150 ~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .+.+++|.|.| .|.||+.+++.|...|++|++++|+...
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   61 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTG   61 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            35688999999 5999999999999999999999986543

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=93.99  E-value=0.076  Score=48.55  Aligned_cols=70  Identities=17%  Similarity=0.207  Sum_probs=47.3

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCcCCHHHHhhcCCEEE
Q 019081          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       153 g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~  230 (346)
                      +++|.|.| .|.||+.+++.|...|++|++.+|+.....  ..   ..        ... ... ...++.++++.+|+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~---~~--------~~~~~Dl-~~~~~~~~~~~~d~Vi   67 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA--IN---DY--------EYRVSDY-TLEDLINQLNDVDAVV   67 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------CC--------EEEECCC-CHHHHHHHTTTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc--CC---ce--------EEEEccc-cHHHHHHhhcCCCEEE
Confidence            46899999 699999999999999999999998732210  00   00        000 001 1245677888999998


Q ss_pred             EeecCC
Q 019081          231 CCLSLN  236 (346)
Q Consensus       231 ~~lPlt  236 (346)
                      .+....
T Consensus        68 h~a~~~   73 (311)
T 3m2p_A           68 HLAATR   73 (311)
T ss_dssp             ECCCCC
T ss_pred             EccccC
Confidence            876543

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=93.97  E-value=0.076  Score=48.70  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .++|.|.|. |.||+.+++.|...|++|++.+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence            468999995 9999999999998999999999875

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=93.94  E-value=0.076  Score=48.65  Aligned_cols=71  Identities=15%  Similarity=0.140  Sum_probs=45.6

Q ss_pred             CeEEEEe-cCHHHHHHHHHHc-cCCCEEEE-EcCCCcccc-ccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILG-FGNIGVELAKRLR-PFGVKIIA-TKRSWASHS-QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~-~~G~~V~~-~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      .+|+|+| +|+||+.+++.+. .-++++.+ +|++..... .....          +...........++++++.++|+|
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~ge----------l~g~~~gv~v~~dl~~ll~~~DVV   77 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGA----------FLGKQTGVALTDDIERVCAEADYL   77 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTT----------TTTCCCSCBCBCCHHHHHHHCSEE
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHH----------HhCCCCCceecCCHHHHhcCCCEE
Confidence            4899999 9999999999876 45888776 677543210 00000          000000011347899999999999


Q ss_pred             EEeec
Q 019081          230 VCCLS  234 (346)
Q Consensus       230 ~~~lP  234 (346)
                      +-..|
T Consensus        78 IDfT~   82 (272)
T 4f3y_A           78 IDFTL   82 (272)
T ss_dssp             EECSC
T ss_pred             EEcCC
Confidence            98764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.93  E-value=0.037  Score=54.53  Aligned_cols=36  Identities=25%  Similarity=0.317  Sum_probs=32.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ..++-|+|+|++|+.+|+.|...|.+|+++|++...
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~   38 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDR   38 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence            457999999999999999999999999999987543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=93.86  E-value=0.096  Score=48.46  Aligned_cols=81  Identities=21%  Similarity=0.191  Sum_probs=48.3

Q ss_pred             ccccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhc
Q 019081          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK  225 (346)
Q Consensus       148 ~~~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~  225 (346)
                      ...+.+++|.|.| .|.||+.+++.|...|++|++++|+..........   +   .+  ..... ......+++++++.
T Consensus        16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~---~---~~--~~~~~~Dl~d~~~~~~~~~~   87 (333)
T 2q1w_A           16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKD---H---PN--LTFVEGSIADHALVNQLIGD   87 (333)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCC---C---TT--EEEEECCTTCHHHHHHHHHH
T ss_pred             eecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhh---c---CC--ceEEEEeCCCHHHHHHHHhc
Confidence            3567889999998 69999999999999999999999864321100000   0   00  00000 00122346677877


Q ss_pred             --CCEEEEeecCC
Q 019081          226 --ADVVVCCLSLN  236 (346)
Q Consensus       226 --aDiV~~~lPlt  236 (346)
                        +|+|+.+....
T Consensus        88 ~~~D~vih~A~~~  100 (333)
T 2q1w_A           88 LQPDAVVHTAASY  100 (333)
T ss_dssp             HCCSEEEECCCCC
T ss_pred             cCCcEEEECceec
Confidence              99998876543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=93.85  E-value=0.11  Score=47.67  Aligned_cols=37  Identities=16%  Similarity=0.154  Sum_probs=33.6

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCC
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      ..+.||++.|.|. |.||+++|+.|...|++|++.+++
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999996 789999999999999999998875

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=93.85  E-value=0.054  Score=51.30  Aligned_cols=46  Identities=24%  Similarity=0.364  Sum_probs=37.2

Q ss_pred             cccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       141 ~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      +-|.......|++++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus        22 Rll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           22 RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             hhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            3444433457899999999999999999999998898 688888643

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.83  E-value=0.024  Score=52.97  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|++|.|+| .|.||...++.++.+|++|++.+++..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  184 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE  184 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            588999999 899999999999999999999998643

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=93.82  E-value=0.13  Score=50.69  Aligned_cols=108  Identities=19%  Similarity=0.174  Sum_probs=65.4

Q ss_pred             ccCCCeEEEEecCH----------HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccc-cccccccccCCcCC
Q 019081          150 TLLGKTVFILGFGN----------IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG-IIDDLVDEKGCHED  218 (346)
Q Consensus       150 ~l~g~tvgIiG~G~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  218 (346)
                      .+.|++|+|+|+.-          -...+++.|...|++|.+|||....... ..   .+..... ..........-..+
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~  401 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQI-VV---DLSHPGVSEDDQVSRLVTISKD  401 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHH-HH---HHCC------CHHHHHEEECSS
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHH-hh---hhccccccccccccCceeecCC
Confidence            47899999999974          6789999999999999999986432100 00   0000000 00000000001136


Q ss_pred             HHHHhhcCCEEEEeecCCccccCCCCHHHH-ccCCCCcEEEEcCCCC
Q 019081          219 IFEFASKADVVVCCLSLNKQTAGIVNKSFL-SSMKKGSLLVNIARGG  264 (346)
Q Consensus       219 l~ell~~aDiV~~~lPlt~~T~~li~~~~l-~~mk~gailIN~sRg~  264 (346)
                      ..+.++.||+|++++.-. +-+. ++.+.+ +.|+...+++++ |+-
T Consensus       402 ~~~~~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          402 PYEACDGAHAVVICTEWD-MFKE-LDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             HHHHHTTCSEEEECSCCG-GGGG-SCHHHHHHHSCSSCEEEES-SCT
T ss_pred             HHHHHhCCcEEEEecCCh-hhhc-CCHHHHHHhcCCCCEEEeC-CCc
Confidence            788899999999998753 3333 355544 457776668887 553

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=93.82  E-value=0.053  Score=49.32  Aligned_cols=74  Identities=18%  Similarity=0.154  Sum_probs=48.1

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEE
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  229 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  229 (346)
                      .+++.|.|. |.||+.+++.|...| ++|.+.+|+..+........      .+  ..... ......++.++++.+|+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~------~~--~~~~~~D~~d~~~l~~~~~~~d~v   76 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRL------QG--AEVVQGDQDDQVIMELALNGAYAT   76 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHH------TT--CEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHH------CC--CEEEEecCCCHHHHHHHHhcCCEE
Confidence            578999998 999999999998888 99999998754311000000      00  00100 001234577888999999


Q ss_pred             EEeec
Q 019081          230 VCCLS  234 (346)
Q Consensus       230 ~~~lP  234 (346)
                      +.+.+
T Consensus        77 i~~a~   81 (299)
T 2wm3_A           77 FIVTN   81 (299)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            98764

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=93.82  E-value=0.064  Score=50.91  Aligned_cols=30  Identities=23%  Similarity=0.318  Sum_probs=25.2

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccC-CCEEEEEc
Q 019081          154 KTVFILG-FGNIGVELAKRLRPF-GVKIIATK  183 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~-G~~V~~~d  183 (346)
                      .+|||+| .|.||+.+++.|... +++|.++.
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~   40 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALA   40 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEE
Confidence            4899999 999999999999765 46887764

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=93.81  E-value=0.55  Score=44.63  Aligned_cols=104  Identities=15%  Similarity=0.138  Sum_probs=65.4

Q ss_pred             ccccCCCeEEEEec--CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHH
Q 019081          148 GETLLGKTVFILGF--GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  221 (346)
Q Consensus       148 ~~~l~g~tvgIiG~--G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  221 (346)
                      +..+.|.+|++||=  +++.++.+..+..||++|....|..-..+.....   .      ........+    ...+++|
T Consensus       176 ~~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~---~------~~~~~~~~g~~v~~~~d~~e  246 (358)
T 4h31_A          176 GKALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVA---A------CQAIAKQTGGKITLTENVAE  246 (358)
T ss_dssp             TCCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHH---H------HHHHHHHHTCEEEEESCHHH
T ss_pred             CCCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHH---H------HHHHHHHcCCcceeccCHHH
Confidence            35789999999995  4899999999999999999987632111000000   0      000111111    2368999


Q ss_pred             HhhcCCEEEEeecCC----cc---------ccCCCCHHHHccC-CCCcEEEEc
Q 019081          222 FASKADVVVCCLSLN----KQ---------TAGIVNKSFLSSM-KKGSLLVNI  260 (346)
Q Consensus       222 ll~~aDiV~~~lPlt----~~---------T~~li~~~~l~~m-k~gailIN~  260 (346)
                      .+++||+|..-.=..    ++         ...-++.+.++++ ||+++|.-+
T Consensus       247 av~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~  299 (358)
T 4h31_A          247 GVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHC  299 (358)
T ss_dssp             HHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEEC
T ss_pred             HhccCcEEEEEEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECC
Confidence            999999997532211    11         1235678888764 778888776

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=93.77  E-value=0.087  Score=49.06  Aligned_cols=38  Identities=24%  Similarity=0.273  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++.+++|.|.|. |.||+.+++.|...|++|++++|+..
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   62 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT   62 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            467889999998 99999999999999999999998653

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=93.77  E-value=0.053  Score=48.48  Aligned_cols=70  Identities=9%  Similarity=0.237  Sum_probs=47.8

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~  231 (346)
                      +++.|.|. |.||+.+++.|...|++|++++|+........             ..... ......++.++++.+|+|+.
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-------------~~~~~~Dl~d~~~~~~~~~~~d~vi~   69 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAH-------------EEIVACDLADAQAVHDLVKDCDGIIH   69 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTT-------------EEECCCCTTCHHHHHHHHTTCSEEEE
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCC-------------ccEEEccCCCHHHHHHHHcCCCEEEE
Confidence            58999998 99999999999999999999998754311000             00000 00122456778889999988


Q ss_pred             eecCC
Q 019081          232 CLSLN  236 (346)
Q Consensus       232 ~lPlt  236 (346)
                      +....
T Consensus        70 ~a~~~   74 (267)
T 3ay3_A           70 LGGVS   74 (267)
T ss_dssp             CCSCC
T ss_pred             CCcCC
Confidence            76543

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=93.77  E-value=0.041  Score=51.57  Aligned_cols=67  Identities=13%  Similarity=0.098  Sum_probs=44.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEE-EcCCCc-cccccccccchhhhccccccccccccC----CcCCHHHHhhc--
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWA-SHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK--  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~--  225 (346)
                      .++||||+|.+|+..++.+ .-+++|++ +|++.. ......              ....+++    .+.++++++++  
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ll~~~~   67 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLE--------------KAISEMNIKPKKYNNWWEMLEKEK   67 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHH--------------HHHHTTTCCCEECSSHHHHHHHHC
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHH--------------HHHHHcCCCCcccCCHHHHhcCCC
Confidence            4899999999999777777 66888765 676542 211000              0101111    24789999964  


Q ss_pred             CCEEEEeecC
Q 019081          226 ADVVVCCLSL  235 (346)
Q Consensus       226 aDiV~~~lPl  235 (346)
                      .|+|++++|.
T Consensus        68 vD~V~I~tp~   77 (337)
T 3ip3_A           68 PDILVINTVF   77 (337)
T ss_dssp             CSEEEECSSH
T ss_pred             CCEEEEeCCc
Confidence            8999999884

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=93.74  E-value=0.035  Score=52.54  Aligned_cols=30  Identities=30%  Similarity=0.526  Sum_probs=25.0

Q ss_pred             CeEEEEecCHHHHHHHHHHcc-CCCEEEEEc
Q 019081          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATK  183 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~-~G~~V~~~d  183 (346)
                      .+|||+|+|.||+.+++.+.. -++++.+..
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~   32 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVS   32 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEE
Confidence            379999999999999998875 578876653

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=93.71  E-value=0.055  Score=51.45  Aligned_cols=38  Identities=32%  Similarity=0.467  Sum_probs=33.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            56899999999999999999999998887 688888754

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=93.70  E-value=0.024  Score=52.83  Aligned_cols=94  Identities=20%  Similarity=0.248  Sum_probs=58.1

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh------h
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA------S  224 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  224 (346)
                      .|++|.|+| .|.||..+++.++..|++|++.+++..+......  .+       .+...+.  ...++.+.+      .
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~--~G-------a~~~~~~--~~~~~~~~~~~~~~~~  208 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA--LG-------AWETIDY--SHEDVAKRVLELTDGK  208 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH--HT-------CSEEEET--TTSCHHHHHHHHTTTC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--cC-------CCEEEeC--CCccHHHHHHHHhCCC
Confidence            588999999 8999999999999999999999876543110000  00       0000000  112332222      1


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      ..|+|+.++..  .    .-...++.++++..+|.++.
T Consensus       209 g~Dvvid~~g~--~----~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          209 KCPVVYDGVGQ--D----TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             CEEEEEESSCG--G----GHHHHHTTEEEEEEEEECCC
T ss_pred             CceEEEECCCh--H----HHHHHHHHhcCCCEEEEEec
Confidence            46888776652  1    12456777888888888863

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=93.64  E-value=0.22  Score=47.32  Aligned_cols=104  Identities=17%  Similarity=0.116  Sum_probs=64.4

Q ss_pred             ccccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc---cccC---CcCCHH
Q 019081          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV---DEKG---CHEDIF  220 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~l~  220 (346)
                      ...|.|.+|++||=+ ++.++++..+..||++|.+..|..-..+.....   .      .....   ...+   ...+++
T Consensus       183 ~~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~---~------~~~~a~~~~~g~~~~~~~d~~  253 (353)
T 3sds_A          183 SLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVE---L------IQKAREGVQSPGNLTQTTVPE  253 (353)
T ss_dssp             CCSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHH---H------HHHHHTTCSSCCCEEEESCHH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHH---H------HHHhhhhccCCCeEEEECCHH
Confidence            345899999999975 577888888889999999987643211110000   0      00000   0011   236899


Q ss_pred             HHhhcCCEEEEee--cCCcc----------ccCCCCHHHHcc--CCCCcEEEEc
Q 019081          221 EFASKADVVVCCL--SLNKQ----------TAGIVNKSFLSS--MKKGSLLVNI  260 (346)
Q Consensus       221 ell~~aDiV~~~l--Plt~~----------T~~li~~~~l~~--mk~gailIN~  260 (346)
                      |.++++|+|..-.  +...+          ...-++.+.+++  +|++++|.-+
T Consensus       254 eav~~aDVvytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHc  307 (353)
T 3sds_A          254 VAVKDADVIVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHC  307 (353)
T ss_dssp             HHTTTCSEEEECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEEC
T ss_pred             HHhcCCCEEEeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECC
Confidence            9999999997632  21111          124578888887  7888887766

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.61  E-value=0.099  Score=49.22  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      |||+|+|-|..|+.+++.++.+|++|+++|+++..
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~   36 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQA   36 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            79999999999999999999999999999976543

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.59  E-value=0.29  Score=47.98  Aligned_cols=39  Identities=18%  Similarity=0.267  Sum_probs=35.7

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ..++.|++|.|||.|.+|.+.++.|...|++|+++++..
T Consensus         7 ~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~   45 (457)
T 1pjq_A            7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF   45 (457)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence            457899999999999999999999999999999999754

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.59  E-value=0.069  Score=53.68  Aligned_cols=85  Identities=16%  Similarity=0.177  Sum_probs=56.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHH-hhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF-ASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el-l~~aDiV~~  231 (346)
                      +++.|+|+|++|+.+|+.|...|.+|+++|.++.......              .....-. ....|+++ +++||.+++
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~--------------~~i~gD~t~~~~L~~agi~~ad~vi~  414 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH--------------VVVYGDATVGQTLRQAGIDRASGIIV  414 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS--------------CEEESCSSSSTHHHHHTTTSCSEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC--------------CEEEeCCCCHHHHHhcCccccCEEEE
Confidence            7899999999999999999999999999998765421110              0000001 12334443 588999999


Q ss_pred             eecCCccccCCCCHHHHccCCCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKG  254 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~g  254 (346)
                      ..+..  ..+++-....+.+.+.
T Consensus       415 ~~~~d--~~ni~~~~~ak~l~~~  435 (565)
T 4gx0_A          415 TTNDD--STNIFLTLACRHLHSH  435 (565)
T ss_dssp             CCSCH--HHHHHHHHHHHHHCSS
T ss_pred             ECCCc--hHHHHHHHHHHHHCCC
Confidence            98753  3344444455556665

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=93.58  E-value=0.036  Score=49.81  Aligned_cols=71  Identities=17%  Similarity=0.187  Sum_probs=44.7

Q ss_pred             eEEEEec-CHHHHHHHHHHccC--CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEE
Q 019081          155 TVFILGF-GNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  230 (346)
                      ++.|.|. |.||+.+++.|...  |++|++.+|+..+......        .+  ..... ......++.++++.+|+|+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~--------~~--~~~~~~D~~d~~~~~~~~~~~d~vi   70 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA--------QG--ITVRQADYGDEAALTSALQGVEKLL   70 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHH--------TT--CEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhc--------CC--CeEEEcCCCCHHHHHHHHhCCCEEE
Confidence            4778986 99999999999988  9999999987543210000        00  00000 0012345778888999998


Q ss_pred             EeecC
Q 019081          231 CCLSL  235 (346)
Q Consensus       231 ~~lPl  235 (346)
                      .+...
T Consensus        71 ~~a~~   75 (286)
T 2zcu_A           71 LISSS   75 (286)
T ss_dssp             ECC--
T ss_pred             EeCCC
Confidence            76653

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.54  E-value=0.032  Score=53.21  Aligned_cols=36  Identities=33%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~  187 (346)
                      .|++|.|+|.|.||...++.++.+| .+|++.+++..
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  231 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN  231 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHH
Confidence            5789999999999999999999999 59999997653

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=93.52  E-value=0.098  Score=49.36  Aligned_cols=80  Identities=15%  Similarity=0.173  Sum_probs=51.0

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccc-cCCcCCHHHHhhc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASK  225 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~  225 (346)
                      ..+.+++|.|.|. |.||+.+++.|...| ++|++++|+..........       ... ...... .....+++++++.
T Consensus        28 ~~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~-------~~~-v~~~~~Dl~d~~~l~~~~~~   99 (377)
T 2q1s_A           28 SKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPD-------HPA-VRFSETSITDDALLASLQDE   99 (377)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCC-------CTT-EEEECSCTTCHHHHHHCCSC
T ss_pred             HHhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccC-------CCc-eEEEECCCCCHHHHHHHhhC
Confidence            3578999999995 999999999999999 9999999865431100000       000 000000 0012345667788


Q ss_pred             CCEEEEeecCC
Q 019081          226 ADVVVCCLSLN  236 (346)
Q Consensus       226 aDiV~~~lPlt  236 (346)
                      +|+|+.+....
T Consensus       100 ~d~Vih~A~~~  110 (377)
T 2q1s_A          100 YDYVFHLATYH  110 (377)
T ss_dssp             CSEEEECCCCS
T ss_pred             CCEEEECCCcc
Confidence            99998776543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.50  E-value=0.019  Score=54.41  Aligned_cols=94  Identities=16%  Similarity=0.089  Sum_probs=59.1

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-----c
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K  225 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  225 (346)
                      .|++|.|+| .|.||..+++.++.+|++|++.+++..+......  .+       .+...+  ....++.+.+.     .
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~--~G-------a~~~~~--~~~~~~~~~~~~~~~~g  231 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS--LG-------CDRPIN--YKTEPVGTVLKQEYPEG  231 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--TT-------CSEEEE--TTTSCHHHHHHHHCTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH--cC-------CcEEEe--cCChhHHHHHHHhcCCC
Confidence            578999999 7999999999999999999999986432110000  00       000000  01123444332     3


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      .|+|+.++..  .    .-...++.|+++..+|.++-
T Consensus       232 ~D~vid~~g~--~----~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          232 VDVVYESVGG--A----MFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEEEEECSCT--H----HHHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCH--H----HHHHHHHHHhcCCEEEEEeC
Confidence            6888887753  1    12456777888888888864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=93.40  E-value=0.14  Score=48.55  Aligned_cols=96  Identities=18%  Similarity=0.195  Sum_probs=59.7

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh---hcCC
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA---SKAD  227 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aD  227 (346)
                      .|++|.|+| .|.||..+++.++.+|++|++.++ ..+... ... .+       .+...+.  ...++.+.+   ...|
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~~-~~~-lG-------a~~v~~~--~~~~~~~~~~~~~g~D  250 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASEL-VRK-LG-------ADDVIDY--KSGSVEEQLKSLKPFD  250 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHH-HHH-TT-------CSEEEET--TSSCHHHHHHTSCCBS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHHH-HHH-cC-------CCEEEEC--CchHHHHHHhhcCCCC
Confidence            688999999 799999999999999999998873 222100 000 00       0000100  112343333   3589


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      +|+-++.....+    -...+..++++..+|.++..
T Consensus       251 ~vid~~g~~~~~----~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          251 FILDNVGGSTET----WAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             EEEESSCTTHHH----HGGGGBCSSSCCEEEESCCS
T ss_pred             EEEECCCChhhh----hHHHHHhhcCCcEEEEeCCC
Confidence            999887643111    13456778999999999753

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=93.35  E-value=0.15  Score=48.22  Aligned_cols=75  Identities=20%  Similarity=0.166  Sum_probs=49.6

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCE
Q 019081          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADV  228 (346)
Q Consensus       151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDi  228 (346)
                      ..+++|.|.|. |.||+.+++.|...|++|++++|+.........        .+  ..... ......++.++++.+|+
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~--v~~~~~Dl~d~~~~~~~~~~~d~   96 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDM--------FC--DEFHLVDLRVMENCLKVTEGVDH   96 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGG--------TC--SEEEECCTTSHHHHHHHHTTCSE
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhcc--------CC--ceEEECCCCCHHHHHHHhCCCCE
Confidence            36789999998 999999999999999999999987543211000        00  00000 00022356778889999


Q ss_pred             EEEeecC
Q 019081          229 VVCCLSL  235 (346)
Q Consensus       229 V~~~lPl  235 (346)
                      |+.+...
T Consensus        97 Vih~A~~  103 (379)
T 2c5a_A           97 VFNLAAD  103 (379)
T ss_dssp             EEECCCC
T ss_pred             EEECcee
Confidence            9877653

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=93.35  E-value=0.047  Score=49.55  Aligned_cols=41  Identities=27%  Similarity=0.323  Sum_probs=34.1

Q ss_pred             CCccccCCCeEEEEec-CH--HHHHHHHHHccCCCEEEEEcCCC
Q 019081          146 PTGETLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       146 ~~~~~l~g~tvgIiG~-G~--IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .....+.||++.|.|. |.  ||+++|+.|...|++|++.+++.
T Consensus        19 ~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           19 SHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             ---CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            3346789999999996 44  99999999999999999998865

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=93.35  E-value=0.13  Score=47.28  Aligned_cols=37  Identities=27%  Similarity=0.345  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .+.+++|.|.|. |.||+.+++.|...|++|++++|+.
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   45 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            467899999998 9999999999999999999999864

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.28  E-value=0.069  Score=50.13  Aligned_cols=93  Identities=12%  Similarity=0.098  Sum_probs=58.9

Q ss_pred             CCeEEEE-ecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh------hc
Q 019081          153 GKTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA------SK  225 (346)
Q Consensus       153 g~tvgIi-G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  225 (346)
                      +++|.|. |.|.||...++.++.+|++|++.+++..+......  .+       .+...+.  ...++.+.+      ..
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~--~G-------a~~~~~~--~~~~~~~~v~~~~~~~g  233 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD--IG-------AAHVLNE--KAPDFEATLREVMKAEQ  233 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH--HT-------CSEEEET--TSTTHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--cC-------CCEEEEC--CcHHHHHHHHHHhcCCC
Confidence            3577665 99999999999999999999999976543211000  00       0001110  112333322      25


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      .|+|+-++.. +.    + ...++.++++..+|.++.
T Consensus       234 ~D~vid~~g~-~~----~-~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          234 PRIFLDAVTG-PL----A-SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             CCEEEESSCH-HH----H-HHHHHHSCTTCEEEECCC
T ss_pred             CcEEEECCCC-hh----H-HHHHhhhcCCCEEEEEec
Confidence            8999987752 21    1 567888999999999973

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=93.26  E-value=0.038  Score=52.68  Aligned_cols=66  Identities=17%  Similarity=0.203  Sum_probs=43.1

Q ss_pred             CeEEEEe-cCHHHHH-HH----HHHccCC-CEE----------EEEcCCCccccccccccchhhhccccccccccccC--
Q 019081          154 KTVFILG-FGNIGVE-LA----KRLRPFG-VKI----------IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--  214 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~-vA----~~l~~~G-~~V----------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  214 (346)
                      .+||||| +|.+|+. .+    +.++..+ ..+          .++|++..+..                 .....++  
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~-----------------~~a~~~~~~   69 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVE-----------------ALAKRFNIA   69 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHH-----------------HHHHHTTCC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHH-----------------HHHHHhCCC
Confidence            3799999 9999997 66    5555433 232          37887654321                 1112222  


Q ss_pred             -CcCCHHHHhhc--CCEEEEeecCC
Q 019081          215 -CHEDIFEFASK--ADVVVCCLSLN  236 (346)
Q Consensus       215 -~~~~l~ell~~--aDiV~~~lPlt  236 (346)
                       .+.++++++++  .|+|+++.|..
T Consensus        70 ~~~~~~~~ll~~~~iD~V~i~tp~~   94 (383)
T 3oqb_A           70 RWTTDLDAALADKNDTMFFDAATTQ   94 (383)
T ss_dssp             CEESCHHHHHHCSSCCEEEECSCSS
T ss_pred             cccCCHHHHhcCCCCCEEEECCCch
Confidence             24789999965  89999999853

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=93.20  E-value=1  Score=44.99  Aligned_cols=155  Identities=14%  Similarity=0.138  Sum_probs=102.3

Q ss_pred             hhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHcc-
Q 019081           96 TRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP-  174 (346)
Q Consensus        96 ~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~-  174 (346)
                      .+..|.|.|.-      -..+|=-+++.+++.+|-.                ++.|.+.++.|.|.|..|-.+|+.+.. 
T Consensus       247 yr~~ipvFnDD------iqGTa~V~lAgllnAlki~----------------gk~l~d~riv~~GAGaAg~gia~ll~~~  304 (555)
T 1gq2_A          247 YRNKYCTFNDD------IQGTASVAVAGLLAALRIT----------------KNRLSDHTVLFQGAGEAALGIANLIVMA  304 (555)
T ss_dssp             HTTTSEEEETT------THHHHHHHHHHHHHHHHHH----------------TSCGGGCCEEEECCSHHHHHHHHHHHHH
T ss_pred             HhccCCEecCc------cchHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence            44579999863      2456777888888888742                578999999999999999999999887 


Q ss_pred             ---CCC-------EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc--CCEEEEeecCCccccCC
Q 019081          175 ---FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       175 ---~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~~~lPlt~~T~~l  242 (346)
                         .|.       +++.+|+..--... ......+  +    ..++.......+|.|+++.  +|+++-.-    ...|+
T Consensus       305 ~~~~G~~~eeA~~~i~~~D~~Gli~~~-r~~l~~~--k----~~~A~~~~~~~~L~eav~~vkp~vlIG~S----~~~g~  373 (555)
T 1gq2_A          305 MQKEGVSKEEAIKRIWMVDSKGLIVKG-RASLTPE--K----EHFAHEHCEMKNLEDIVKDIKPTVLIGVA----AIGGA  373 (555)
T ss_dssp             HHHHTCCHHHHHTTEEEEETTEECBTT-CSSCCTT--G----GGGCBSCCCCCCHHHHHHHHCCSEEEECS----CCTTC
T ss_pred             HHHcCCChHHHhCcEEEEECCCeeeCC-CCCchHH--H----HHHHhhcCCCCCHHHHHhhcCCCEEEEec----CCCCC
Confidence               684       68999875321100 0000000  0    1122111123579999985  99998752    22489


Q ss_pred             CCHHHHccCC---CCcEEEEcCCCCCCCHHHHHHHHH--hCC-CeEE
Q 019081          243 VNKSFLSSMK---KGSLLVNIARGGLLDYEAIAHYLE--CGH-LGGL  283 (346)
Q Consensus       243 i~~~~l~~mk---~gailIN~sRg~~vd~~aL~~aL~--~g~-i~ga  283 (346)
                      ++++.++.|.   +.+++.=.|....-.|-.=.+|.+  .|+ |.+-
T Consensus       374 ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivAT  420 (555)
T 1gq2_A          374 FTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFAS  420 (555)
T ss_dssp             SCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTTTCCEEEE
T ss_pred             CCHHHHHHHHhcCCCCEEEECCCCCCccCcCHHHHHHhccCCEEEEe
Confidence            9999999997   799999999876533333333444  455 4433

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=93.20  E-value=0.11  Score=47.49  Aligned_cols=66  Identities=15%  Similarity=0.246  Sum_probs=40.6

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc--CCEE
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVV  229 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  229 (346)
                      +++|.|.|. |.||+.+++.|...|++|++++|+.... . .       +.    .++.    ...++.++++.  +|+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~-~-------~~----~Dl~----d~~~~~~~~~~~~~d~v   64 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARP-K-F-------EQ----VNLL----DSNAVHHIIHDFQPHVI   64 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CHHHHHHHCCSEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCC-C-e-------EE----ecCC----CHHHHHHHHHhhCCCEE
Confidence            578999997 9999999999999999999999754320 0 0       00    0110    23456677764  8999


Q ss_pred             EEeecC
Q 019081          230 VCCLSL  235 (346)
Q Consensus       230 ~~~lPl  235 (346)
                      +.+...
T Consensus        65 ih~A~~   70 (315)
T 2ydy_A           65 VHCAAE   70 (315)
T ss_dssp             EECC--
T ss_pred             EECCcc
Confidence            877643

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=93.20  E-value=0.93  Score=45.63  Aligned_cols=156  Identities=10%  Similarity=0.090  Sum_probs=102.9

Q ss_pred             hhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHcc-
Q 019081           96 TRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP-  174 (346)
Q Consensus        96 ~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~-  174 (346)
                      .+..|.|.|.-      -..+|=-+++.+++.+|-.                ++.|.+.++.|.|.|..|-.+|+.+.. 
T Consensus       285 yr~~ipvFnDD------iqGTA~V~lAgllnAlki~----------------gk~l~d~riv~~GAGaAgigia~ll~~~  342 (605)
T 1o0s_A          285 YQDKYTMFNDD------IQGTASVIVAGLLTCTRVT----------------KKLVSQEKYLFFGAGAASTGIAEMIVHQ  342 (605)
T ss_dssp             HTTTSEEEEHH------HHHHHHHHHHHHHHHHHHH----------------CCCGGGCCEEEECCSHHHHHHHHHHHHH
T ss_pred             hccCCCeeCcc------cchHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence            44579998862      2456777788888877642                578999999999999999999999887 


Q ss_pred             ---CCC-------EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc--CCEEEEeecCCccccCC
Q 019081          175 ---FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTAGI  242 (346)
Q Consensus       175 ---~G~-------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~~~lPlt~~T~~l  242 (346)
                         .|.       +++.+|+..--... ......+  +    ..++.......+|.|+++.  +|+++-.-    ...|+
T Consensus       343 m~~~Gl~~eeA~~~i~~vD~~Gli~~~-r~~l~~~--k----~~~A~~~~~~~~L~eav~~vkpdVlIG~S----~~~g~  411 (605)
T 1o0s_A          343 MQNEGISKEEACNRIYLMDIDGLVTKN-RKEMNPR--H----VQFAKDMPETTSILEVIRAARPGALIGAS----TVRGA  411 (605)
T ss_dssp             HHTTTCCHHHHHHTEEEEETTEECBTT-CSSCCGG--G----TTTCBSSCCCCCHHHHHHHHCCSEEEECS----SCTTC
T ss_pred             HHHcCCChhhhhCeEEEEECCCceeCC-CCCchHH--H----HHHHhhcCCCCCHHHHHhhcCCCEEEEec----CCCCC
Confidence               785       58999875321100 0000000  0    1111111123579999985  99998752    22489


Q ss_pred             CCHHHHccCC---CCcEEEEcCCCCCCCHHHHHHHHH--hCC-CeEEE
Q 019081          243 VNKSFLSSMK---KGSLLVNIARGGLLDYEAIAHYLE--CGH-LGGLG  284 (346)
Q Consensus       243 i~~~~l~~mk---~gailIN~sRg~~vd~~aL~~aL~--~g~-i~ga~  284 (346)
                      ++++.++.|.   +.+++.=.|....-.|-.=.+|.+  .|+ |.+-|
T Consensus       412 ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~~pe~a~~~t~G~aivATG  459 (605)
T 1o0s_A          412 FNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASG  459 (605)
T ss_dssp             SCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHTTTSCCEEEES
T ss_pred             CCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHhhccCCEEEEEC
Confidence            9999999997   799999999876533333334444  465 44443

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.19  E-value=0.076  Score=47.72  Aligned_cols=39  Identities=33%  Similarity=0.414  Sum_probs=34.9

Q ss_pred             cccCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+|.||++.|.|.+   .||+++|+.|...|++|++.+|+..
T Consensus         2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~   43 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER   43 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46899999999974   6999999999999999999998754

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=93.12  E-value=0.064  Score=49.71  Aligned_cols=46  Identities=26%  Similarity=0.408  Sum_probs=34.1

Q ss_pred             cccCC-CCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          141 KKLGV-PTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       141 ~~~~~-~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      .+|+. .....|++++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus        23 ~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           23 KRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             ---------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             cccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            45664 34467999999999999999999999998887 788888654

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=93.03  E-value=0.3  Score=46.31  Aligned_cols=94  Identities=16%  Similarity=0.229  Sum_probs=56.4

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhcccccccccccc-CCcCCHHHHhhcCCEE
Q 019081          153 GKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVV  229 (346)
Q Consensus       153 g~tvgIiG-~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV  229 (346)
                      -.+||||| .|.+|+.+.++|... ..++..+.........-.   ..+  ++     +.... ....+.++++.++|+|
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~---~~~--p~-----~~~~l~~~~~~~~~~~~~~Dvv   82 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLE---EIF--PS-----TLENSILSEFDPEKVSKNCDVL   82 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHH---HHC--GG-----GCCCCBCBCCCHHHHHHHCSEE
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChH---HhC--hh-----hccCceEEeCCHHHhhcCCCEE
Confidence            35899997 699999999999755 346665543211100000   000  00     00000 1123556666889999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      ++++|..      ..++....+ .|+.+|+.|--
T Consensus        83 f~alp~~------~s~~~~~~~-~g~~VIDlSsd  109 (351)
T 1vkn_A           83 FTALPAG------ASYDLVREL-KGVKIIDLGAD  109 (351)
T ss_dssp             EECCSTT------HHHHHHTTC-CSCEEEESSST
T ss_pred             EECCCcH------HHHHHHHHh-CCCEEEECChh
Confidence            9999954      335555666 79999999843

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=92.97  E-value=0.11  Score=46.98  Aligned_cols=41  Identities=27%  Similarity=0.453  Sum_probs=34.2

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ...+.||++.|.|. |.||+++|+.|...|++|++.+|+...
T Consensus        23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~   64 (266)
T 3uxy_A           23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAG   64 (266)
T ss_dssp             ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTT
T ss_pred             hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            45789999999987 679999999999999999999987543

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=92.85  E-value=0.17  Score=47.35  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEe-cCHHHHHHHHHHcc--CCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILG-FGNIGVELAKRLRP--FGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG-~G~IG~~vA~~l~~--~G~~V~~~d~~~~  187 (346)
                      .++.+++|.|.| .|.||+.+++.|..  .|++|++++|+..
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~   47 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS   47 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCc
Confidence            467899999996 59999999999998  8999999998654

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=92.85  E-value=0.14  Score=50.77  Aligned_cols=64  Identities=25%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       153 g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      +++|.|.| .|.||+.+++.|...|++|++++|+.......                ..+   ....+.+++..+|+|+.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v----------------~~d---~~~~~~~~l~~~D~Vih  207 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKR----------------FWD---PLNPASDLLDGADVLVH  207 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCE----------------ECC---TTSCCTTTTTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccce----------------eec---ccchhHHhcCCCCEEEE
Confidence            67999999 69999999999999999999999876432100                000   01234566788999987


Q ss_pred             eecC
Q 019081          232 CLSL  235 (346)
Q Consensus       232 ~lPl  235 (346)
                      +...
T Consensus       208 ~A~~  211 (516)
T 3oh8_A          208 LAGE  211 (516)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6653

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=92.85  E-value=0.12  Score=46.46  Aligned_cols=72  Identities=14%  Similarity=0.078  Sum_probs=47.3

Q ss_pred             eEEEEe-cCHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081          155 TVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       155 tvgIiG-~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~  231 (346)
                      +|.|.| .|.||+.+++.|... |.+|++.+|+..+......        .+  ..... ......++.++++.+|+|+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~--------~~--v~~~~~D~~d~~~l~~~~~~~d~vi~   71 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWR--------GK--VSVRQLDYFNQESMVEAFKGMDTVVF   71 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGB--------TT--BEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhh--------CC--CEEEEcCCCCHHHHHHHHhCCCEEEE
Confidence            688999 599999999999887 9999999987643211000        00  00000 00123467788999999998


Q ss_pred             eecCC
Q 019081          232 CLSLN  236 (346)
Q Consensus       232 ~lPlt  236 (346)
                      +.+..
T Consensus        72 ~a~~~   76 (289)
T 3e48_A           72 IPSII   76 (289)
T ss_dssp             CCCCC
T ss_pred             eCCCC
Confidence            77643

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=92.84  E-value=0.19  Score=45.22  Aligned_cols=61  Identities=25%  Similarity=0.379  Sum_probs=45.0

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCE
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  228 (346)
                      ..++|.|.|. |.||+.+++.|...|++|++++|+...                    +.    ...++.++++  .+|+
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D--------------------l~----d~~~~~~~~~~~~~d~   66 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLD--------------------IT----NVLAVNKFFNEKKPNV   66 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCC--------------------TT----CHHHHHHHHHHHCCSE
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCC--------------------CC----CHHHHHHHHHhcCCCE
Confidence            4568888885 999999999999999999999885321                    10    1235667777  6999


Q ss_pred             EEEeecCC
Q 019081          229 VVCCLSLN  236 (346)
Q Consensus       229 V~~~lPlt  236 (346)
                      |+.+....
T Consensus        67 vih~A~~~   74 (292)
T 1vl0_A           67 VINCAAHT   74 (292)
T ss_dssp             EEECCCCC
T ss_pred             EEECCccC
Confidence            98776543

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.83  E-value=0.033  Score=51.78  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=32.2

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .|++|.|+| .|.||..+++.++..|++|++.+++.
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~  175 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA  175 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            588999999 79999999999999999999998864

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=92.81  E-value=0.13  Score=48.14  Aligned_cols=109  Identities=18%  Similarity=0.152  Sum_probs=62.6

Q ss_pred             CeEEEEe-cCHHHHHHHHHHcc---CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILG-FGNIGVELAKRLRP---FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~---~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      .+|+|+| .|.||..++..+..   +.-++..+|..... ......     ..+.......... ...+..+.+++||+|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~-~G~a~D-----l~~~~~~~~v~~~-~~~~~~~~~~~aDiv   73 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT-PGVAVD-----LSHIPTAVKIKGF-SGEDATPALEGADVV   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTH-HHHHHH-----HHTSCSSEEEEEE-CSSCCHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCc-hhHHHH-----hhCCCCCceEEEe-cCCCcHHHhCCCCEE
Confidence            3799999 99999999998863   55689999986521 100000     0000000000000 012456788999999


Q ss_pred             EEeecCCccccCCC-------CH-------HHHccCCCCcEEEEcCCCCCCCHHHHH
Q 019081          230 VCCLSLNKQTAGIV-------NK-------SFLSSMKKGSLLVNIARGGLLDYEAIA  272 (346)
Q Consensus       230 ~~~lPlt~~T~~li-------~~-------~~l~~mk~gailIN~sRg~~vd~~aL~  272 (346)
                      +++.+. +...|+-       |.       +.+....|++++++++  ..+|.-..+
T Consensus        74 ii~ag~-~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           74 LISAGV-ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             EECCSC-SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             EEeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            998763 3333332       11       1233346889999995  566655444

>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}

Probab=92.81  E-value=0.16  Score=46.48  Aligned_cols=36  Identities=17%  Similarity=0.017  Sum_probs=27.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ....|++|++||+-    ...++++.-++++.++|+++..
T Consensus       137 ~~~~g~kV~vIG~f----P~i~~~~~~~~~l~V~E~~p~~  172 (270)
T 3l5o_A          137 NEVKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE  172 (270)
T ss_dssp             TTTTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT
T ss_pred             cccCCCEEEEECCc----hhHHHHHhcCCCEEEEECCCCC
Confidence            34679999999986    3445556668999999987643

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=92.76  E-value=0.096  Score=47.74  Aligned_cols=40  Identities=25%  Similarity=0.176  Sum_probs=32.7

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..++.+|++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~   63 (283)
T 3v8b_A           23 MMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRT   63 (283)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            45789999999986 78999999999999999999998753

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=92.67  E-value=0.16  Score=46.36  Aligned_cols=62  Identities=19%  Similarity=0.272  Sum_probs=45.9

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCE
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  228 (346)
                      .+++|.|.| .|.||+.+++.|...|++|++++++..-                   ++.    ...++.++++  .+|+
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~-------------------D~~----d~~~~~~~~~~~~~d~   58 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-------------------NLL----DSRAVHDFFASERIDQ   58 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTC-------------------CTT----CHHHHHHHHHHHCCSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccC-------------------Ccc----CHHHHHHHHHhcCCCE
Confidence            357899999 5999999999999999999998764311                   111    1235667777  8999


Q ss_pred             EEEeecCC
Q 019081          229 VVCCLSLN  236 (346)
Q Consensus       229 V~~~lPlt  236 (346)
                      |+.+....
T Consensus        59 vih~a~~~   66 (321)
T 1e6u_A           59 VYLAAAKV   66 (321)
T ss_dssp             EEECCCCC
T ss_pred             EEEcCeec
Confidence            98876543

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=92.67  E-value=0.17  Score=48.10  Aligned_cols=28  Identities=18%  Similarity=0.399  Sum_probs=22.8

Q ss_pred             eEEEEecCHHHHHHHHHHccC----CCEEEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPF----GVKIIAT  182 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~----G~~V~~~  182 (346)
                      +|||||+|.||+.+++.+...    +++|.++
T Consensus         6 ~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV   37 (358)
T 1ebf_A            6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLL   37 (358)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEE
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCCCEEEEEE
Confidence            799999999999999988764    3566554

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=92.65  E-value=0.26  Score=45.37  Aligned_cols=78  Identities=21%  Similarity=0.149  Sum_probs=47.5

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEE
Q 019081          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       153 g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~  230 (346)
                      +++|.|.| .|.||+.+++.|...|++|++..|+......... ...+. ....+ .... ......+++++++.+|+|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~-~~~~~-~~~~~-~~~~~Dl~d~~~~~~~~~~~D~Vi   85 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSH-LLELQ-ELGDL-KIFRADLTDELSFEAPIAGCDFVF   85 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHH-HHHHG-GGSCE-EEEECCTTTSSSSHHHHTTCSEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHH-HHhcC-CCCcE-EEEecCCCChHHHHHHHcCCCEEE
Confidence            78999999 7999999999999999999988775432110000 00000 00000 0110 0112356788899999988


Q ss_pred             Eee
Q 019081          231 CCL  233 (346)
Q Consensus       231 ~~l  233 (346)
                      .+.
T Consensus        86 h~A   88 (338)
T 2rh8_A           86 HVA   88 (338)
T ss_dssp             EES
T ss_pred             EeC
Confidence            765

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.57  E-value=0.19  Score=49.64  Aligned_cols=111  Identities=22%  Similarity=0.211  Sum_probs=67.3

Q ss_pred             ccccCCCeEEEEecC----------HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhc-cccccccccccCCc
Q 019081          148 GETLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK-NGIIDDLVDEKGCH  216 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  216 (346)
                      +..+.|++|+|+|+-          .=...+++.|...|++|.+|||.....  ...   .|... .+ +..........
T Consensus       323 ~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~--~~~---~~~~~~~~-~~~~~~~~~~~  396 (478)
T 2y0c_A          323 GEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEE--ARR---VIALDLAD-HPSWLERLSFV  396 (478)
T ss_dssp             CSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHH--HHH---HHHHHTTT-CHHHHTTEEEC
T ss_pred             cccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHH--HHH---hhcccccc-ccccccceeec
Confidence            346899999999984          357888999999999999999864221  000   00000 00 00000000012


Q ss_pred             CCHHHHhhcCCEEEEeecCCccccCCCCHHHH-ccCCCCcEEEEcCCCCCCCHH
Q 019081          217 EDIFEFASKADVVVCCLSLNKQTAGIVNKSFL-SSMKKGSLLVNIARGGLLDYE  269 (346)
Q Consensus       217 ~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l-~~mk~gailIN~sRg~~vd~~  269 (346)
                      .++++.++.||+|++++.-. +-+. ++.+.+ +.|+ +.+++++ |+ +.+.+
T Consensus       397 ~~~~~~~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          397 DDEAQAARDADALVIVTEWK-IFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             SSHHHHTTTCSEEEECSCCG-GGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             CCHHHHHhCCCEEEEecCCh-Hhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            46788999999999998753 3232 355555 4455 4789988 44 45544

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=92.46  E-value=0.21  Score=44.76  Aligned_cols=57  Identities=18%  Similarity=0.402  Sum_probs=43.3

Q ss_pred             eEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCEEEE
Q 019081          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVVVC  231 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~~  231 (346)
                      +|.|.|. |.||+.+++.|...|++|++.+|....                    ..    ...++.++++  .+|+|+.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D--------------------~~----d~~~~~~~~~~~~~d~vi~   62 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLD--------------------IT----NISQVQQVVQEIRPHIIIH   62 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSC--------------------TT----CHHHHHHHHHHHCCSEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecccccC--------------------CC----CHHHHHHHHHhcCCCEEEE
Confidence            8999994 999999999999999999999984321                    10    1235667776  5999987


Q ss_pred             eecC
Q 019081          232 CLSL  235 (346)
Q Consensus       232 ~lPl  235 (346)
                      +...
T Consensus        63 ~a~~   66 (287)
T 3sc6_A           63 CAAY   66 (287)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            6543

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=92.45  E-value=1.3  Score=41.94  Aligned_cols=77  Identities=18%  Similarity=0.061  Sum_probs=48.7

Q ss_pred             cccCCCeEEEEec-------CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcC
Q 019081          149 ETLLGKTVFILGF-------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE  217 (346)
Q Consensus       149 ~~l~g~tvgIiG~-------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  217 (346)
                      .++.|++++++|.       .++.++....+..||++|...-+.+.-.+.+...  ...      .....+.+    ...
T Consensus       186 ~dl~g~kv~~~~~~~gd~~~~~Va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~--~~~------~~~~~~~g~~i~~~~  257 (359)
T 3kzn_A          186 PDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYM--DWA------AQNVAESGGSLQVSH  257 (359)
T ss_dssp             SCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHH--HHH------HHHHHHHSCEEEEEC
T ss_pred             ccccCCeEEEEEeecCCccccchhhhhHHHHHhccccEEEEecccccCCCHHHH--HHH------HHHHHhhCCCccccc
Confidence            3688999999986       3689999999999999999887642111000000  000      00001111    246


Q ss_pred             CHHHHhhcCCEEEEee
Q 019081          218 DIFEFASKADVVVCCL  233 (346)
Q Consensus       218 ~l~ell~~aDiV~~~l  233 (346)
                      ++++.++++|+|..-.
T Consensus       258 d~~eav~~aDvvyt~r  273 (359)
T 3kzn_A          258 DIDSAYAGADVVYAKS  273 (359)
T ss_dssp             CHHHHHTTCSEEEEEC
T ss_pred             CHHHHhcCCeEEEEEE
Confidence            8999999999998754

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=92.42  E-value=0.2  Score=46.02  Aligned_cols=72  Identities=17%  Similarity=0.162  Sum_probs=45.5

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|.|.|. |.||+.+++.|...|++|++++|+.........  .      +  ..... ......++.++++.+|+|+.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~--~------~--~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAY--L------E--PECRVAEMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGG--G------C--CEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhcc--C------C--eEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            48999995 999999999999999999999987543210000  0      0  00000 00122456778889999987


Q ss_pred             eecC
Q 019081          232 CLSL  235 (346)
Q Consensus       232 ~lPl  235 (346)
                      +...
T Consensus        84 ~a~~   87 (342)
T 2x4g_A           84 SAGY   87 (342)
T ss_dssp             C---
T ss_pred             CCcc
Confidence            7653

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=92.42  E-value=0.035  Score=54.59  Aligned_cols=124  Identities=17%  Similarity=0.132  Sum_probs=68.4

Q ss_pred             CeEEEEecCHH-HHHHHHHHc----cC-CCEEEEEcCCC--ccccccccccchhhhcccccccc-cc-ccCCcCCHHHHh
Q 019081          154 KTVFILGFGNI-GVELAKRLR----PF-GVKIIATKRSW--ASHSQVSCQSSALAVKNGIIDDL-VD-EKGCHEDIFEFA  223 (346)
Q Consensus       154 ~tvgIiG~G~I-G~~vA~~l~----~~-G~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~ell  223 (346)
                      .+|+|||.|.. |.+++..|.    .+ +-+|..||+..  .........  ...+    .... .. ......++.+.+
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~--~~~~----~~~~~~~~~i~~t~D~~eal   81 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGAL--AKRM----VEKAGVPIEIHLTLDRRRAL   81 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHH--HHHH----HHHTTCCCEEEEESCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHH--HHHH----HhhcCCCcEEEEeCCHHHHh
Confidence            58999999999 777655443    34 66899999865  321110000  0000    0000 00 000125788899


Q ss_pred             hcCCEEEEeecCCcc-----------ccCCCC----------------------HHHHccCCCCcEEEEcCCCCCCCHHH
Q 019081          224 SKADVVVCCLSLNKQ-----------TAGIVN----------------------KSFLSSMKKGSLLVNIARGGLLDYEA  270 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~-----------T~~li~----------------------~~~l~~mk~gailIN~sRg~~vd~~a  270 (346)
                      +.||+|++++|....           ..+++.                      .+.+....|+|++||++-.-=+-+.+
T Consensus        82 ~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a  161 (450)
T 1s6y_A           82 DGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEA  161 (450)
T ss_dssp             TTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHH
T ss_pred             CCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH
Confidence            999999999985321           111110                      12344456899999998665444555


Q ss_pred             HHHHHHhCCCeEE
Q 019081          271 IAHYLECGHLGGL  283 (346)
Q Consensus       271 L~~aL~~g~i~ga  283 (346)
                      +.+.....++-|.
T Consensus       162 ~~k~~p~~rViG~  174 (450)
T 1s6y_A          162 VLRYTKQEKVVGL  174 (450)
T ss_dssp             HHHHCCCCCEEEC
T ss_pred             HHHhCCCCCEEEe
Confidence            5444322244443

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=92.41  E-value=0.16  Score=47.15  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=33.7

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       151 l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      +.+++|.|.| .|.||+.+++.|...|++|++++|+...
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   45 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   45 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence            5688999999 5999999999999999999999986543

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=92.34  E-value=0.073  Score=49.95  Aligned_cols=105  Identities=15%  Similarity=0.098  Sum_probs=60.5

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEE
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~  230 (346)
                      .+|+|+| .|.+|..++..|...|  .+|..+|+..... ...+    +  .+..............++.+.++.||+|+
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~-~~~d----L--~~~~~~~~v~~~~~t~d~~~al~gaDvVi   81 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPG-VTAD----I--SHMDTGAVVRGFLGQQQLEAALTGMDLII   81 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHH-HHHH----H--HTSCSSCEEEEEESHHHHHHHHTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHh-HHHH----h--hcccccceEEEEeCCCCHHHHcCCCCEEE
Confidence            5899999 8999999999998777  7899999754310 0000    0  00000000000001235678899999999


Q ss_pred             EeecCCccccCCC-------C----H---HHHccCCCCcEEEEcCCCCCCCH
Q 019081          231 CCLSLNKQTAGIV-------N----K---SFLSSMKKGSLLVNIARGGLLDY  268 (346)
Q Consensus       231 ~~lPlt~~T~~li-------~----~---~~l~~mk~gailIN~sRg~~vd~  268 (346)
                      ++.+. +...+.-       |    +   +.+....+.+++++++  ..+|.
T Consensus        82 ~~ag~-~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~  130 (326)
T 1smk_A           82 VPAGV-PRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS  130 (326)
T ss_dssp             ECCCC-CCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             EcCCc-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence            99873 3322221       1    1   1222235788999974  45554

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=92.33  E-value=0.031  Score=55.96  Aligned_cols=38  Identities=32%  Similarity=0.543  Sum_probs=29.7

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.|+++.|+|.|.+|+++|+.|...|++|++++|+..
T Consensus       361 ~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~  398 (523)
T 2o7s_A          361 PLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYE  398 (523)
T ss_dssp             -----CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHH
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            47889999999999999999999999999999998753

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=92.32  E-value=0.1  Score=44.52  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=29.9

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .|.|||.|..|...|..|+..|.+|+++|+..
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            48999999999999999999999999999754

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=92.28  E-value=0.082  Score=51.88  Aligned_cols=106  Identities=15%  Similarity=0.183  Sum_probs=60.1

Q ss_pred             CeEEEEecCHHHHHHHHHHc----------cCCCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081          154 KTVFILGFGNIGVELAKRLR----------PFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~----------~~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (346)
                      -+|||+|+|.||+.+++.+.          +.+++|.+ +|++..+.    +             ..........+++++
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~----~-------------~~~~~~~~~~d~~el   73 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKA----E-------------ALAGGLPLTTNPFDV   73 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHH----H-------------HHHTTCCEESCTHHH
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHh----h-------------hhcccCcccCCHHHH
Confidence            48999999999999987664          25667655 45543221    0             011111124688899


Q ss_pred             hh--cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCC-CHHHHHHHHHhCCC
Q 019081          223 AS--KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL-DYEAIAHYLECGHL  280 (346)
Q Consensus       223 l~--~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~v-d~~aL~~aL~~g~i  280 (346)
                      +.  +.|+|+.++|.+..-..+    ..+.++.|--++..--+-.. .-++|.++.++...
T Consensus        74 l~d~diDvVve~tp~~~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv  130 (444)
T 3mtj_A           74 VDDPEIDIVVELIGGLEPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGV  130 (444)
T ss_dssp             HTCTTCCEEEECCCSSTTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hcCCCCCEEEEcCCCchHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCC
Confidence            86  579999999853221111    23445556555543222222 23577777666544

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=92.27  E-value=0.24  Score=44.66  Aligned_cols=60  Identities=23%  Similarity=0.310  Sum_probs=43.0

Q ss_pred             eEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc--CCEEEE
Q 019081          155 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVC  231 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~~  231 (346)
                      +|.|.|. |.||+.+++.|. .|++|++++|+.....                .+..    ...++.++++.  +|+|+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~~----------------~D~~----d~~~~~~~~~~~~~d~vih   60 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEFC----------------GDFS----NPKGVAETVRKLRPDVIVN   60 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSSC----------------CCTT----CHHHHHHHHHHHCCSEEEE
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEecccccccc----------------ccCC----CHHHHHHHHHhcCCCEEEE
Confidence            6889997 999999999999 7999999998642100                0010    12356677776  999887


Q ss_pred             eecC
Q 019081          232 CLSL  235 (346)
Q Consensus       232 ~lPl  235 (346)
                      +...
T Consensus        61 ~a~~   64 (299)
T 1n2s_A           61 AAAH   64 (299)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            7653

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=92.26  E-value=0.25  Score=45.60  Aligned_cols=68  Identities=21%  Similarity=0.213  Sum_probs=44.5

Q ss_pred             CeEEEEe-cCHHHHHHHHHHc-cCCCEEEE-EcCCCccc-cccccccchhhhccccccccc--cccC--CcCCHHHHhhc
Q 019081          154 KTVFILG-FGNIGVELAKRLR-PFGVKIIA-TKRSWASH-SQVSCQSSALAVKNGIIDDLV--DEKG--CHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~-~~G~~V~~-~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~ell~~  225 (346)
                      .+|+|+| +|+||+.+++.+. .-++++.+ +|++.... -.+.             .++.  ...+  ...++++++.+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~-------------gel~G~~~~gv~v~~dl~~ll~~   88 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDA-------------SILIGSDFLGVRITDDPESAFSN   88 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBG-------------GGGTTCSCCSCBCBSCHHHHTTS
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccch-------------HHhhccCcCCceeeCCHHHHhcC
Confidence            4899999 9999999999875 56888665 47653221 0000             0110  1111  34689999999


Q ss_pred             CCEEEEeec
Q 019081          226 ADVVVCCLS  234 (346)
Q Consensus       226 aDiV~~~lP  234 (346)
                      +|+|+-..+
T Consensus        89 aDVvIDFT~   97 (288)
T 3ijp_A           89 TEGILDFSQ   97 (288)
T ss_dssp             CSEEEECSC
T ss_pred             CCEEEEcCC
Confidence            999987653

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=92.26  E-value=0.099  Score=46.95  Aligned_cols=72  Identities=15%  Similarity=0.152  Sum_probs=46.5

Q ss_pred             CeEEEEec-CHHHHHHHHHHccC--CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILGF-GNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  229 (346)
                      ++|.|.|. |.||+.+++.|...  |++|++++|+..+......        .+  ..... ......++.++++.+|+|
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~--------~~--~~~~~~D~~d~~~l~~~~~~~d~v   70 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD--------QG--VEVRHGDYNQPESLQKAFAGVSKL   70 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH--------TT--CEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh--------cC--CeEEEeccCCHHHHHHHHhcCCEE
Confidence            46889987 99999999999988  9999999986543110000        00  00000 001234577788899999


Q ss_pred             EEeecC
Q 019081          230 VCCLSL  235 (346)
Q Consensus       230 ~~~lPl  235 (346)
                      +.+...
T Consensus        71 i~~a~~   76 (287)
T 2jl1_A           71 LFISGP   76 (287)
T ss_dssp             EECCCC
T ss_pred             EEcCCC
Confidence            876653

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=92.26  E-value=0.2  Score=48.59  Aligned_cols=74  Identities=18%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             ccCCCeEEEEe-----cCH---HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcC
Q 019081          150 TLLGKTVFILG-----FGN---IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE  217 (346)
Q Consensus       150 ~l~g~tvgIiG-----~G~---IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  217 (346)
                      .|.|++|+|+|     +|.   +.++++..+..||++|.+..|..-... +...  ..      ....+...+    ...
T Consensus       185 ~l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~-p~~~--~~------a~~~a~~~G~~v~~~~  255 (418)
T 2yfk_A          185 NLKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIM-PEVE--EV------AKKNAAEFGGNFTKTN  255 (418)
T ss_dssp             GGTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCC-HHHH--HH------HHHHHHHHSSEEEEES
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCC-HHHH--HH------HHHHHHHcCCEEEEEc
Confidence            38899999997     354   999999999999999999876422100 0000  00      000001111    246


Q ss_pred             CHHHHhhcCCEEEEe
Q 019081          218 DIFEFASKADVVVCC  232 (346)
Q Consensus       218 ~l~ell~~aDiV~~~  232 (346)
                      ++++.++++|+|..-
T Consensus       256 d~~eav~~ADVVytd  270 (418)
T 2yfk_A          256 SMAEAFKDADVVYPK  270 (418)
T ss_dssp             CHHHHHTTCSEEEEC
T ss_pred             CHHHHhcCCCEEEEc
Confidence            899999999999884

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=92.19  E-value=0.24  Score=45.09  Aligned_cols=32  Identities=28%  Similarity=0.302  Sum_probs=29.5

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcC
Q 019081          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKR  184 (346)
Q Consensus       153 g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~  184 (346)
                      ||+|.|.| .|.||+.+++.|...|++|++..|
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r   33 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR   33 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEe
Confidence            68899999 599999999999999999999887

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=92.18  E-value=0.17  Score=46.57  Aligned_cols=81  Identities=22%  Similarity=0.118  Sum_probs=46.8

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCE
Q 019081          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADV  228 (346)
Q Consensus       151 l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDi  228 (346)
                      +.+++|.|.| .|.||+.+++.|...|++|++..|+......... ...+......+ .... ......+++++++.+|+
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~~d~   80 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKH-LLDLPKAETHL-TLWKADLADEGSFDEAIKGCTG   80 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHH-HHTSTTHHHHE-EEEECCTTSTTTTHHHHTTCSE
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHH-HHhcccCCCeE-EEEEcCCCCHHHHHHHHcCCCE
Confidence            4678999999 8999999999999999999988776432100000 00000000000 0010 01123567888999999


Q ss_pred             EEEee
Q 019081          229 VVCCL  233 (346)
Q Consensus       229 V~~~l  233 (346)
                      |+.+.
T Consensus        81 Vih~A   85 (337)
T 2c29_D           81 VFHVA   85 (337)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            87655

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=92.17  E-value=0.052  Score=49.74  Aligned_cols=68  Identities=22%  Similarity=0.232  Sum_probs=42.0

Q ss_pred             CeEEEEec-CHHHHHHHHHHc-cCCCEEE-EEcCCCccccccccccchhhhccccccccc--cccC--CcCCHHHHhhcC
Q 019081          154 KTVFILGF-GNIGVELAKRLR-PFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKG--CHEDIFEFASKA  226 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~-~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~ell~~a  226 (346)
                      .+|+|+|+ |.||+.+++.+. .-|+++. ++|++.........            .+..  ...+  ...++++++..+
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~------------~~~~g~~~~~v~~~~dl~~~l~~~   73 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDA------------GELAGAGKTGVTVQSSLDAVKDDF   73 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCT------------TCSSSSSCCSCCEESCSTTTTTSC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhH------------HHHcCCCcCCceecCCHHHHhcCC
Confidence            48999999 999999999765 5688876 66765422100000            0000  0001  135677888899


Q ss_pred             CEEEEee
Q 019081          227 DVVVCCL  233 (346)
Q Consensus       227 DiV~~~l  233 (346)
                      |+|+-..
T Consensus        74 DvVIDft   80 (273)
T 1dih_A           74 DVFIDFT   80 (273)
T ss_dssp             SEEEECS
T ss_pred             CEEEEcC
Confidence            9999444

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=92.13  E-value=0.2  Score=45.62  Aligned_cols=37  Identities=27%  Similarity=0.352  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .+.+|+|.|||.|.||-.+|..++.+|.+|..+.+..
T Consensus       142 ~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  178 (312)
T 4gcm_A          142 FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD  178 (312)
T ss_dssp             GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc
Confidence            4568899999999999999999999999999998754

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=92.09  E-value=0.13  Score=48.09  Aligned_cols=82  Identities=17%  Similarity=0.234  Sum_probs=50.9

Q ss_pred             cccCCCeEEEEe-cCHHHHHHHHHHccC-CC-EEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhh
Q 019081          149 ETLLGKTVFILG-FGNIGVELAKRLRPF-GV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFAS  224 (346)
Q Consensus       149 ~~l~g~tvgIiG-~G~IG~~vA~~l~~~-G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~  224 (346)
                      ..+.+++|.|.| .|.||+.+++.|... |+ +|++++|+..+.......   +  ....+ .... ......++.++++
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~---~--~~~~v-~~~~~Dl~d~~~l~~~~~   90 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAME---F--NDPRM-RFFIGDVRDLERLNYALE   90 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHH---H--CCTTE-EEEECCTTCHHHHHHHTT
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHH---h--cCCCE-EEEECCCCCHHHHHHHHh
Confidence            347899999999 599999999999988 98 999999864321000000   0  00000 0000 0012245667888


Q ss_pred             cCCEEEEeecCC
Q 019081          225 KADVVVCCLSLN  236 (346)
Q Consensus       225 ~aDiV~~~lPlt  236 (346)
                      .+|+|+.+....
T Consensus        91 ~~D~Vih~Aa~~  102 (344)
T 2gn4_A           91 GVDICIHAAALK  102 (344)
T ss_dssp             TCSEEEECCCCC
T ss_pred             cCCEEEECCCCC
Confidence            999998877543

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=92.07  E-value=0.074  Score=51.77  Aligned_cols=37  Identities=24%  Similarity=0.216  Sum_probs=32.8

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      -.|++|.|+|. |.||...++.++..|++|++.+++..
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~  256 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQ  256 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            36889999998 99999999999999999999886543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=92.05  E-value=0.24  Score=47.67  Aligned_cols=67  Identities=15%  Similarity=0.058  Sum_probs=48.9

Q ss_pred             ccCCCeEEEEecC----------HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCH
Q 019081          150 TLLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI  219 (346)
Q Consensus       150 ~l~g~tvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  219 (346)
                      .+.|++|+|+|+-          .=...+++.|...|++|.+|||.....   .              ..... ....++
T Consensus       306 ~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~---~--------------~~~~~-~~~~~~  367 (402)
T 1dlj_A          306 ESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKL---E--------------SEDQS-VLVNDL  367 (402)
T ss_dssp             CCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCC---C--------------TTCCS-EECCCH
T ss_pred             CCCCCEEEEEeeeccCCCcccccChHHHHHHHHHHCCCEEEEECCCCChH---H--------------HHcCC-eecCCH
Confidence            5899999999984          357889999999999999999963321   0              00000 012468


Q ss_pred             HHHhhcCCEEEEeec
Q 019081          220 FEFASKADVVVCCLS  234 (346)
Q Consensus       220 ~ell~~aDiV~~~lP  234 (346)
                      +++++.||+|+++..
T Consensus       368 ~~~~~~~d~~v~~~~  382 (402)
T 1dlj_A          368 ENFKKQANIIVTNRY  382 (402)
T ss_dssp             HHHHHHCSEEECSSC
T ss_pred             HHHHhCCcEEEEecC
Confidence            899999999999665

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=92.03  E-value=0.12  Score=47.27  Aligned_cols=70  Identities=17%  Similarity=0.225  Sum_probs=45.5

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhc--CCE
Q 019081          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK--ADV  228 (346)
Q Consensus       153 g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~--aDi  228 (346)
                      .+++.|.| .|.||+.+++.|...|++|++++|+.... . .    .        ..... ......++.++++.  .|+
T Consensus        12 ~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~-l----~--------~~~~~~Dl~d~~~~~~~~~~~~~d~   77 (321)
T 2pk3_A           12 SMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAK-L-P----N--------VEMISLDIMDSQRVKKVISDIKPDY   77 (321)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCC-C-T----T--------EEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccc-c-c----e--------eeEEECCCCCHHHHHHHHHhcCCCE
Confidence            45788887 49999999999999999999999865431 0 0    0        00000 00122356677765  899


Q ss_pred             EEEeecCC
Q 019081          229 VVCCLSLN  236 (346)
Q Consensus       229 V~~~lPlt  236 (346)
                      |+.+....
T Consensus        78 vih~A~~~   85 (321)
T 2pk3_A           78 IFHLAAKS   85 (321)
T ss_dssp             EEECCSCC
T ss_pred             EEEcCccc
Confidence            98876543

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=91.93  E-value=0.13  Score=52.16  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=37.9

Q ss_pred             hcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       140 ~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      .+-|.......|++++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus       313 wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          313 WRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            34454443457999999999999999999999998888 688888754

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=91.92  E-value=0.1  Score=47.45  Aligned_cols=71  Identities=21%  Similarity=0.282  Sum_probs=46.4

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccC--CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhh--cC
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFAS--KA  226 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~--~a  226 (346)
                      ++++.|.|. |.||+.+++.|...  |++|++++|+........          +  ..... ......+++++++  .+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~----------~--~~~~~~D~~d~~~~~~~~~~~~~   69 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVN----------S--GPFEVVNALDFNQIEHLVEVHKI   69 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHH----------S--SCEEECCTTCHHHHHHHHHHTTC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccC----------C--CceEEecCCCHHHHHHHHhhcCC
Confidence            478999998 99999999999887  899999998654310000          0  00000 0002235667777  78


Q ss_pred             CEEEEeecC
Q 019081          227 DVVVCCLSL  235 (346)
Q Consensus       227 DiV~~~lPl  235 (346)
                      |+|+.+...
T Consensus        70 d~vih~a~~   78 (312)
T 2yy7_A           70 TDIYLMAAL   78 (312)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999877643

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=91.91  E-value=0.11  Score=48.73  Aligned_cols=53  Identities=25%  Similarity=0.268  Sum_probs=42.9

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|.|.| .|.||+.+++.|...|. +|+..|++..                            ..++.++++++|+|+.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d----------------------------~~~l~~~~~~~d~Vih   52 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTK----------------------------EEELESALLKADFIVH   52 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCC----------------------------HHHHHHHHHHCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCC----------------------------HHHHHHHhccCCEEEE
Confidence            3788999 79999999999999998 9999987411                            1256788889999987


Q ss_pred             eec
Q 019081          232 CLS  234 (346)
Q Consensus       232 ~lP  234 (346)
                      +..
T Consensus        53 ~a~   55 (369)
T 3st7_A           53 LAG   55 (369)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            664

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=91.90  E-value=0.09  Score=51.24  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++.+|+|.|||+|..|.+.|+.|+..|++|.++|.+..
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~   39 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence            36789999999999999999999999999999997653

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=91.89  E-value=0.36  Score=38.65  Aligned_cols=69  Identities=20%  Similarity=0.183  Sum_probs=43.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHccC-CCEEEEE-cCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  228 (346)
                      .+++.|+|.|..|+.+++.+... |++|+++ |.........              .....-.+ ..++.++++  ..|.
T Consensus         4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~--------------i~g~pV~g-~~~l~~~~~~~~id~   68 (141)
T 3nkl_A            4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTT--------------MQGITIYR-PKYLERLIKKHCIST   68 (141)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCE--------------ETTEEEEC-GGGHHHHHHHHTCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCE--------------ecCeEEEC-HHHHHHHHHHCCCCE
Confidence            56899999999999999998743 8998875 4432210000              00011112 346667664  4789


Q ss_pred             EEEeecCC
Q 019081          229 VVCCLSLN  236 (346)
Q Consensus       229 V~~~lPlt  236 (346)
                      |++++|..
T Consensus        69 viia~~~~   76 (141)
T 3nkl_A           69 VLLAVPSA   76 (141)
T ss_dssp             EEECCTTS
T ss_pred             EEEeCCCC
Confidence            99999854

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.86  E-value=0.1  Score=46.67  Aligned_cols=39  Identities=26%  Similarity=0.327  Sum_probs=35.1

Q ss_pred             cccCCCeEEEEec-C-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGF-G-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..+.||++.|.|. | .||+++|+.|...|++|++.+|+..
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~   58 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHER   58 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHH
Confidence            4689999999999 8 5999999999999999999998754

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=91.85  E-value=0.15  Score=46.32  Aligned_cols=45  Identities=22%  Similarity=0.267  Sum_probs=38.2

Q ss_pred             cCCCCccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          143 LGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      |......++.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus         6 ~~~~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~   51 (291)
T 3rd5_A            6 WTAADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTR   51 (291)
T ss_dssp             CCGGGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CChhhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5444456789999999986 78999999999999999999998754

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=91.85  E-value=0.2  Score=44.77  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=32.6

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ...+.+|++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus        16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   56 (253)
T 2nm0_A           16 PRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGE   56 (253)
T ss_dssp             ----CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            35688999999986 79999999999999999999998654

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=91.83  E-value=0.031  Score=51.90  Aligned_cols=90  Identities=17%  Similarity=0.201  Sum_probs=60.4

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCC-HHHHhhcCC
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHED-IFEFASKAD  227 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-l~ell~~aD  227 (346)
                      .|++|.|+| .|.||...++.++.+|++|++.++..+ . . ...      .     -.++...  ...+ +.+.+...|
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~-~-~-~~~------~-----lGa~~~i~~~~~~~~~~~~~g~D  217 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRN-H-A-FLK------A-----LGAEQCINYHEEDFLLAISTPVD  217 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHH-H-H-HHH------H-----HTCSEEEETTTSCHHHHCCSCEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccch-H-H-HHH------H-----cCCCEEEeCCCcchhhhhccCCC
Confidence            578999997 999999999999999999998864221 1 0 000      0     0011110  1234 666667789


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +|+-++.. +.    . ...++.++++..++.++
T Consensus       218 ~v~d~~g~-~~----~-~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          218 AVIDLVGG-DV----G-IQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             EEEESSCH-HH----H-HHHGGGEEEEEEEEECC
T ss_pred             EEEECCCc-HH----H-HHHHHhccCCCEEEEeC
Confidence            99987752 11    2 56788899999999885

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=91.73  E-value=0.35  Score=44.34  Aligned_cols=34  Identities=29%  Similarity=0.330  Sum_probs=29.9

Q ss_pred             CeEEEEec-CHHHHHHHHHHccC-CCEEEEEcCCCc
Q 019081          154 KTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~-G~~V~~~d~~~~  187 (346)
                      ++|.|.|. |.||+.+++.|... |++|++++|+..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   36 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD   36 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCG
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            47889997 99999999999887 899999998754

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=91.72  E-value=0.27  Score=46.52  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=30.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      |+|+|+|.|..|+.+++.++..|++|+++|+..
T Consensus         2 ~~Ililg~g~~g~~~~~a~~~~G~~v~~~~~~~   34 (380)
T 3ax6_A            2 KKIGIIGGGQLGKMMTLEAKKMGFYVIVLDPTP   34 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            589999999999999999999999999998754

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=91.66  E-value=0.16  Score=46.58  Aligned_cols=36  Identities=33%  Similarity=0.420  Sum_probs=32.2

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|+++.|.|. |.||+.+++.|...|++|++++|+..
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            5789999997 99999999999999999999998754

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=91.53  E-value=0.1  Score=51.81  Aligned_cols=112  Identities=18%  Similarity=0.169  Sum_probs=65.0

Q ss_pred             CCeEEEEecCHHHHH-HHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          153 GKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       153 g~tvgIiG~G~IG~~-vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .|+|.|||.|.+|.+ +|+.|+..|++|.++|......... ..           .....-... .+ .+.+..+|+|++
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~-l~-----------~~gi~~~~g-~~-~~~~~~~d~vV~   87 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQH-LT-----------ALGAQIYFH-HR-PENVLDASVVVV   87 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHH-HH-----------HTTCEEESS-CC-GGGGTTCSEEEE
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHH-HH-----------HCCCEEECC-CC-HHHcCCCCEEEE
Confidence            579999999999996 8999999999999999764321000 00           000000001 12 234567999987


Q ss_pred             e--ecCC-cc-----ccC--CCCH-HHHcc-CCCC-cEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          232 C--LSLN-KQ-----TAG--IVNK-SFLSS-MKKG-SLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       232 ~--lPlt-~~-----T~~--li~~-~~l~~-mk~g-ailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      .  +|.+ |.     .++  ++++ +.+.. |+.. .+-|-=+.|..-...=+...|++.
T Consensus        88 Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~  147 (494)
T 4hv4_A           88 STAISADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEA  147 (494)
T ss_dssp             CTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhc
Confidence            5  4432 11     122  3333 33333 3422 344555678877777777778764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	346
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	2e-27
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	7e-27
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	8e-25
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	2e-23
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	4e-22
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	4e-14
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	2e-12
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	3e-12
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	3e-11
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	1e-09
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	5e-08
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	7e-07
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	1e-06
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	2e-06
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	2e-06
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	2e-06
d1np3a2	182	c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer	1e-04
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	2e-04
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	3e-04
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	0.002
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	0.003

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  104 bits (260), Expect = 2e-27
 Identities = 53/203 (26%), Positives = 78/203 (38%), Gaps = 20/203 (9%)

Query: 115 SCAELTIYLMLGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK 170
           S AE  + ++L L+R         R         V     L    V  +  G IG+ + +
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLR 61

Query: 171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230
           RL PF V +  T R     S     +                   H    +     DVV 
Sbjct: 62  RLAPFDVHLHYTDRHRLPESVEKELNLT----------------WHATREDMYPVCDVVT 105

Query: 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 290
               L+ +T  ++N   L   K+G+ +VN ARG L D +A+A  LE G L G   DV + 
Sbjct: 106 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 165

Query: 291 EPFDPNDPILKFKNVLITPHVGG 313
           +P   + P        +TPH+ G
Sbjct: 166 QPAPKDHPWRTMPYNGMTPHISG 188

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  103 bits (256), Expect = 7e-27
 Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 22/204 (10%)

Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQKK-----LGVPTGETLLGKTVFILGFGNIGVELA 169
           + AE+ + L+LG  R+  E    I  +           GE L  KT+ I GFG+IG  LA
Sbjct: 4   ATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALA 63

Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
           KR + F + I       AS S  +                  +   H+ +    S +   
Sbjct: 64  KRAQGFDMDIDYFDTHRASSSDEASY----------------QATFHDSLDSLLSVSQFF 107

Query: 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289
                   +T    NK+ + S+ +G+++VN ARG L+D E +   LE G L   G DV  
Sbjct: 108 SLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFA 167

Query: 290 TEPFDPNDPILKFKNVLITPHVGG 313
            EP + N+      N  + PH+G 
Sbjct: 168 GEP-NINEGYYDLPNTFLFPHIGS 190

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 97.4 bits (241), Expect = 8e-25
 Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 26/208 (12%)

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELA 169
           N  S AEL I  +L LLR   E      +              GK + I+G+G+IG +L 
Sbjct: 1   NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 60

Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
                 G+ +             +                       + + +  + +DVV
Sbjct: 61  ILAESLGMYVYFYDIENKLPLGNAT--------------------QVQHLSDLLNMSDVV 100

Query: 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289
              +  N  T  ++    +S MK GSLL+N +RG ++D  A+A  L   HL G  IDV  
Sbjct: 101 SLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFP 160

Query: 290 TEPFDPND----PILKFKNVLITPHVGG 313
           TEP   +D    P+ +F NVL+TPH+GG
Sbjct: 161 TEPATNSDPFTSPLAEFDNVLLTPHIGG 188

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 93.9 bits (232), Expect = 2e-23
 Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 21/203 (10%)

Query: 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELA 169
           N  S AE  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A
Sbjct: 1   NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVA 60

Query: 170 KRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 229
           +R+  FG  ++A                   V       L  E    +D+    ++AD +
Sbjct: 61  QRIAAFGAYVVAYDPY---------------VSPARAAQLGIELLSLDDLL---ARADFI 102

Query: 230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 289
              L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A  +  GH+   G+DV  
Sbjct: 103 SVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFA 162

Query: 290 TEPFDPNDPILKFKNVLITPHVG 312
           TEP   + P+ +   V++TPH+G
Sbjct: 163 TEPC-TDSPLFELAQVVVTPHLG 184

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 90.1 bits (222), Expect = 4e-22
 Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 27/208 (12%)

Query: 115 SCAELTIYLMLGLLRKQNEMRMAI---------EQKKLGVPTGETLLGKTVFILGFGNIG 165
             A+ T+  +L L R+   +  A+         EQ +        + G+T+ I+G G +G
Sbjct: 2   ETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVG 61

Query: 166 VELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK 225
             +A R + FG  ++      +   + +                         + +    
Sbjct: 62  QAVALRAKAFGFNVLFYDPYLSDGVERALGLQ-----------------RVSTLQDLLFH 104

Query: 226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGI 285
           +D V     LN+    ++N   +  M++G+ LVN ARGGL+D +A+A  L+ G + G  +
Sbjct: 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 164

Query: 286 DVAWTEPFDPND-PILKFKNVLITPHVG 312
           DV  +EPF  +  P+    N++ TPH  
Sbjct: 165 DVHESEPFSFSQGPLKDAPNLICTPHAA 192

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 67.9 bits (164), Expect = 4e-14
 Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 36/216 (16%)

Query: 114 ASCAELTIYLMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAK 170
           A+ AE  +   L LLR   +++  ++    +K G   G+ L  +TV ++G G+IG    K
Sbjct: 3   AAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIK 62

Query: 171 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 230
             + FG K+IA                                  +  + +   ++DV+ 
Sbjct: 63  LFKGFGAKVIAYDPYPMKGDHPDF--------------------DYVSLEDLFKQSDVID 102

Query: 231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 290
             +   +Q   I+N++  + MK G++++N AR  L+D +A+   L+ G L G+GID    
Sbjct: 103 LHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEY 162

Query: 291 EPFDPN-------------DPILKFKNVLITPHVGG 313
           E  D               D +L   NV+++PH+  
Sbjct: 163 ETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAY 198

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 62.9 bits (151), Expect = 2e-12
 Identities = 39/213 (18%), Positives = 78/213 (36%), Gaps = 34/213 (15%)

Query: 115 SCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRL 172
           + AE        +LR+   M   + +   +     G  +  + V ++G G+IG    + +
Sbjct: 3   AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIM 62

Query: 173 RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
             FG K+I          +                         + + +   +ADV+   
Sbjct: 63  EGFGAKVITYDIFRNPELEKKGY-------------------YVDSLDDLYKQADVISLH 103

Query: 233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 292
           +        ++N   ++ MK+  ++VN++RG L+D +A+   L+ G + G  +DV   E 
Sbjct: 104 VPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEV 163

Query: 293 -------------FDPNDPILKFKNVLITPHVG 312
                              ++   NVL+TP   
Sbjct: 164 GIFNEDWEGKEFPDARLADLIARPNVLVTPKTA 196

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 16/126 (12%), Positives = 41/126 (32%), Gaps = 13/126 (10%)

Query: 13  TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDS 68
           T++            + KE+   +  ++V+       P+ +A       + V + +   +
Sbjct: 1   TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIA 59

Query: 69  NCISRANQMKLIM--QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126
             +       +       VG++ +D+  A   G ++  +P        S     +  M+ 
Sbjct: 60  ETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPV------YSYTTHAVRNMVV 113

Query: 127 LLRKQN 132
                N
Sbjct: 114 KAFDNN 119

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 59.4 bits (142), Expect = 3e-11
 Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 24/203 (11%)

Query: 113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL-GKTVFILGFGNIGVELAKR 171
           A + AE  + L+L   ++  +    +++   G      L+ G+ V +LG G IG  + K 
Sbjct: 1   ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKI 60

Query: 172 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 231
           L   G ++    R+          S                      + E   +A   VC
Sbjct: 61  LAALGAQVRGFSRTPKEGPWRFTNS----------------------LEEALREARAAVC 98

Query: 232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 291
            L LNK T G+V    L+ M + ++ VN+ R  +LD + +   L+         DV W  
Sbjct: 99  ALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGR 158

Query: 292 -PFDPNDPILKFKNVLITPHVGG 313
             F  +       NV+ TP V G
Sbjct: 159 NDFAKDAEFFSLPNVVATPWVAG 181

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 53.1 bits (127), Expect = 1e-09
 Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 32/134 (23%)

Query: 46  ISDVPDVIANYHL---CVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKV 102
           +     ++    L         R+ +  +++  ++K I     GL+ +   +     + V
Sbjct: 17  LRKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 103 ARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFG 162
           A   G    N      +   +++  +R                          +     G
Sbjct: 76  AGNAG---SNGYGNERVWRQMVMEAVR-------------------------NLITYATG 107

Query: 163 NIGVELAKRLRPFG 176
                +AKR    G
Sbjct: 108 GRPRNIAKREDYIG 121

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 5e-08
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
             +  T+ L    + +   +++I++ G G + +DI +A   GI V  +P      +    
Sbjct: 47  ALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP----AASVYSE 102

Query: 118 ELTIYLMLGLLRK 130
           + +I +     R+
Sbjct: 103 QASIEMREEAARE 115

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 45.8 bits (108), Expect = 7e-07
 Identities = 15/75 (20%), Positives = 25/75 (33%)

Query: 58  LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA 117
           L  +               +K I  + +G + +D++A    GIKV   P   T      A
Sbjct: 49  LITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMA 108

Query: 118 ELTIYLMLGLLRKQN 132
                L+  L    +
Sbjct: 109 HQANDLIDALFGGAD 123

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 10/113 (8%), Positives = 36/113 (31%), Gaps = 9/113 (7%)

Query: 33  LQNYPSIQVDVVPISDVPDV---IANYH-LCVVKTMRLDSNCISRANQMKLI--MQFGVG 86
                   ++        +       +  +  ++T    +    + +   +       VG
Sbjct: 19  WAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG 78

Query: 87  LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE 139
            + +D+ A  + GI+++ +P        +   +  + +  L+    +   + E
Sbjct: 79  TDNIDMTAMKQYGIRLSNVPA---YTETAVHNMVYFSLQHLVDFLTKGETSTE 128

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 9   DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPIS----DVPDVIANYHLCVVKTM 64
           +K+  + L         H    E L+      ++    +     + + I + H   +++ 
Sbjct: 1   EKDKIKFLLVEG----VHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSR 56

Query: 65  RL-DSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123
                + I+ A ++  I  F +G   VD++AA + GI V   P   T       E     
Sbjct: 57  THLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQ---EAQENIGLE 113

Query: 124 MLGLLRKQ--NEMRM 136
           + G L K   N   +
Sbjct: 114 VAGKLIKYSDNGSTL 128

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 45.3 bits (107), Expect = 2e-06
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 65  RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124
            L    I++A  +KL +  G+G + VD+ +A    + VA +      N+ +      Y  
Sbjct: 102 YLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTY---CNSTTLTAQARYAA 158

Query: 125 L 125
            
Sbjct: 159 G 159

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 39  IQVDVVPISDVPDVIA---NYHLCVVKTMRLDSNCI-SRANQMKLIMQFGVGLEGVDINA 94
           ++V  V   D   ++A        +V++       + + A ++K++ + GVGL+ VD++A
Sbjct: 23  VEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDA 82

Query: 95  ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK 142
           AT  G+ V   P      + + A+      +    +       +    
Sbjct: 83  ATARGVLVVNAPTS---ASTAEAQDRAGTDVAESVRLALAGEFVPDAV 127

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 18/123 (14%)

Query: 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD 208
             + GK V I+G+G+ G   A  L+  GV +    RS  S +    ++  L V +     
Sbjct: 12  SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG-SATVAKAEAHGLKVAD----- 65

Query: 209 LVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY 268
                     +    + AD VV  L+ ++    +  +    ++KKG+ L   A G  + Y
Sbjct: 66  ----------VKTAVAAAD-VVMILTPDEFQGRLYKEEIEPNLKKGATLA-FAHGFSIHY 113

Query: 269 EAI 271
             +
Sbjct: 114 NQV 116

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 8/105 (7%)

Query: 134 MRMAIEQKKLGVPTG--ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT---KRSWAS 188
           +   IE        G       KT  + GFGN+G+   + L  FG K +A      S  +
Sbjct: 15  IENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWN 74

Query: 189 HSQVSCQSS-ALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 232
              +  +      +++G I      K     I E     D+++  
Sbjct: 75  PDGIDPKELEDFKLQHGTILGFPKAKIYEGSILE--VDCDILIPA 117

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 22/129 (17%)

Query: 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 206
           T   + GK   + G+G++G   A+ LR FG ++I T+    +  Q + +   +   +   
Sbjct: 18  TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMD--- 74

Query: 207 DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI-ARGGL 265
                         E   + ++ V           I+       MK  +++ NI      
Sbjct: 75  --------------EACQEGNIFVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVE 116

Query: 266 LDYEAIAHY 274
           +D + +   
Sbjct: 117 IDVKWLNEN 125

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 17/111 (15%)

Query: 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV 210
           L  +   I+G G++    A+ L   G ++     ++                        
Sbjct: 10  LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------------VWA 53

Query: 211 DEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 261
           +E         F  +  +  C L++       VN+    + +   +  N+ 
Sbjct: 54  NEGMLTLVEGPF-DETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 180
           M+  +  + LG     +L G TV + G G +G  LA      G +++
Sbjct: 13  MKATVAHRGLG-----SLDGLTVLVQGLGAVGGSLASLAAEAGAQLL 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	346
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.9
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.85
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.85
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.84
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.81
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.78
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.78
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.77
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.63
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.39
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.35
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.29
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.24
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.18
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.07
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.92
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.88
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.82
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.77
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.7
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.7
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.62
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.57
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.55
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.53
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.49
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.16
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.15
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.06
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.04
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.04
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.98
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.96
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.94
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.94
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.88
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.79
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.77
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.73
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.73
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.73
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.66
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.62
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.6
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.58
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.56
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.5
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.43
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.42
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.4
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.37
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.35
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.32
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.27
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.16
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.11
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.1
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.07
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.07
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.04
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.99
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.95
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.92
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.89
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.88
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.85
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.82
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.81
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.79
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.71
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.71
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.69
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.68
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	96.64
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.61
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.43
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.42
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.32
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.29
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.28
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.26
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.24
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.16
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.14
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.0
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.0
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	95.91
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.76
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.74
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.7
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	95.62
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.61
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.58
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.57
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.53
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.52
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.51
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	95.49
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.48
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.47
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	95.47
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.41
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.4
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.37
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.3
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.23
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.17
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	95.15
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.06
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.03
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.02
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	94.95
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.92
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.88
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.87
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.86
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	94.75
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	94.71
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.64
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	94.62
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	94.58
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.56
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.53
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.5
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.48
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.47
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.38
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.36
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.31
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.3
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.23
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	94.21
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.17
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.16
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.1
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	94.09
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	93.98
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.96
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.76
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.76
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.69
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.67
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.66
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.65
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.64
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	93.43
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.39
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	93.27
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.18
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.15
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.14
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.12
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.04
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	93.01
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.98
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.97
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.88
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.88
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.82
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	92.81
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.78
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	92.66
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	92.66
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.57
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.49
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.48
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.44
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	92.43
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.32
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	92.16
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	92.1
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	92.09
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	92.09
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	92.01
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.88
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	91.85
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.82
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.75
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	91.72
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	91.67
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	91.54
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.47
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.4
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	91.38
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.36
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	91.3
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	91.27
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.14
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.01
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.0
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.97
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.94
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.86
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	90.84
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.78
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	90.69
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	90.64
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.63
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	90.62
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	90.59
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	90.58
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.43
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	90.43
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	90.36
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.34
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.33
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.28
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.21
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	90.19
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.18
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	90.18
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	90.18
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	90.16
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.15
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.14
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.1
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.07
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	90.06
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.9
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	89.89
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	89.73
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	89.63
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.59
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.59
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	89.57
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.54
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	89.3
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	89.27
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.26
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	89.26
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.24
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.2
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.06
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	88.98
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.85
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	88.85
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.49
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	88.29
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	88.03
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.02
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	87.86
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	87.84
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	87.84
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	87.76
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.74
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	87.63
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.61
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.54
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	87.53
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	87.51
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	87.31
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	87.15
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	87.14
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	87.13
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.07
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	86.86
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	86.78
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	86.75
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	86.65
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	86.33
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.96
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.82
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.82
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	85.81
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	85.75
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	85.73
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.64
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.62
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	85.61
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	85.52
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.48
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	85.37
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	85.31
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	85.13
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	85.06
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	85.06
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	85.05
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	84.74
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	84.69
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.64
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.64
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	84.0
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.99
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	83.89
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	83.6
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.51
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.47
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	83.4
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	83.11
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.02
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	83.0
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	82.95
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	82.91
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.73
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	82.3
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	81.98
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	81.76
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	81.5
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	81.44
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	81.39
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	80.91
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	80.64
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	80.62
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	80.27
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	80.21

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.1e-55  Score=384.04  Aligned_cols=182  Identities=30%  Similarity=0.488  Sum_probs=166.5

Q ss_pred             ChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccc
Q 019081          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (346)
Q Consensus       112 na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~  189 (346)
                      |+.+||||++++||++.|++..+++.++++.|..  ..+.++.|+++||+|+|.||+.+|+++++|||+|++||++..+.
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~   80 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA   80 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence            6789999999999999999999999999999964  46789999999999999999999999999999999999875431


Q ss_pred             cccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHH
Q 019081          190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE  269 (346)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~  269 (346)
                      .                  .........+++|++++||+|++|||+|++|++|||++.|++||+|++|||+|||++||++
T Consensus        81 ~------------------~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~  142 (184)
T d1ygya1          81 R------------------AAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEA  142 (184)
T ss_dssp             H------------------HHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred             H------------------HhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhH
Confidence            1                  0011113468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCC
Q 019081          270 AIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG  312 (346)
Q Consensus       270 aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a  312 (346)
                      ||++||++|+|+||+||||++||++ ++|||++|||++|||+|
T Consensus       143 aL~~aL~~~~i~~a~lDV~~~EP~~-~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         143 ALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             HHHHHHHTSSEEEEEESSCSSSSCS-CCGGGGCTTEEECSSCS
T ss_pred             HHHHHHhcCcEeEEEEeCCCCCCCC-CchHhcCCCEEECCCCC
Confidence            9999999999999999999999985 89999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=2.9e-53  Score=375.13  Aligned_cols=183  Identities=26%  Similarity=0.412  Sum_probs=165.2

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC---------CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcC
Q 019081          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (346)
Q Consensus       114 ~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~---------~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~  184 (346)
                      ++|||+++++||++.|++..+++.+++|.|..         ..+.+|+||||||||+|+||+.+|+++++|||+|++||+
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            47999999999999999999999999999964         347899999999999999999999999999999999998


Q ss_pred             CCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      ........                 ........++++++++||+|++|||+|++|++|||++.|++||+|++|||+|||+
T Consensus        81 ~~~~~~~~-----------------~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~  143 (193)
T d1mx3a1          81 YLSDGVER-----------------ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGG  143 (193)
T ss_dssp             TSCTTHHH-----------------HHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTT
T ss_pred             cccccchh-----------------hhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCce
Confidence            75432100                 0000124689999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhCCCeEEEEecCCCCCCC-CCCCCCCCCceEEccCCCC
Q 019081          265 LLDYEAIAHYLECGHLGGLGIDVAWTEPFD-PNDPILKFKNVLITPHVGG  313 (346)
Q Consensus       265 ~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-~~~pL~~~~nviiTPH~a~  313 (346)
                      +||++||+++|++|+|+||+||||++||++ .++|||++|||++|||+|+
T Consensus       144 ivde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         144 LVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             SBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EEcHHHHHHHHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            999999999999999999999999999987 4789999999999999986

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=2.3e-53  Score=375.33  Aligned_cols=185  Identities=31%  Similarity=0.416  Sum_probs=165.6

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       113 a~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~-----~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +.+|||+++++||+++|++.++++.++++.|..     ..+++++|+|+||||+|+||+.+|+++++|||+|++||++..
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            368999999999999999999999999999962     357899999999999999999999999999999999998654


Q ss_pred             cccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCC
Q 019081          188 SHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD  267 (346)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd  267 (346)
                      .....                .........++++++++||+|++|+|+|++|++|||++.|++||+|++|||+|||++||
T Consensus        82 ~~~~~----------------~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivd  145 (191)
T d1gdha1          82 SSSDE----------------ASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVD  145 (191)
T ss_dssp             CHHHH----------------HHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBC
T ss_pred             ccchh----------------hcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchh
Confidence            32100                00000124689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCC
Q 019081          268 YEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGV  314 (346)
Q Consensus       268 ~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~  314 (346)
                      ++||++||++|+|+||+||||++|| ++++|||++|||++|||+|++
T Consensus       146 e~aL~~aL~~g~i~~a~lDV~~~EP-~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         146 NELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             HHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSSCTTC
T ss_pred             hHHHHHHHHcCCceEEEEECCCCCC-CCCchHHcCCCEEECCccccC
Confidence            9999999999999999999999999 568999999999999999974

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=1.8e-52  Score=369.06  Aligned_cols=183  Identities=28%  Similarity=0.365  Sum_probs=165.9

Q ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhcccCC----CCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccc
Q 019081          115 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS  190 (346)
Q Consensus       115 ~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~  190 (346)
                      +||||+++++|++.|++..+++.+++++|..    ..+.+|.|+++||+|+|+||+++|+++++|||+|.+||+......
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   81 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES   81 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc
Confidence            7999999999999999999999999999963    347889999999999999999999999999999999998654321


Q ss_pred             ccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHH
Q 019081          191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEA  270 (346)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~a  270 (346)
                      ...                ........++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++|
T Consensus        82 ~~~----------------~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~a  145 (188)
T d2naca1          82 VEK----------------ELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDA  145 (188)
T ss_dssp             HHH----------------HHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             ccc----------------cccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHH
Confidence            100                0001134689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCC
Q 019081          271 IAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGG  313 (346)
Q Consensus       271 L~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~  313 (346)
                      |++||++|+++||+||||++||++.++|||++||+++|||+||
T Consensus       146 L~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         146 VARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             HHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             HHHHHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            9999999999999999999999999999999999999999997

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=6.5e-53  Score=374.89  Aligned_cols=181  Identities=28%  Similarity=0.358  Sum_probs=163.9

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHhcccC---CCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccc
Q 019081          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLG---VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS  190 (346)
Q Consensus       114 ~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~---~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~  190 (346)
                      .+||||++++||++.|++..+++.+++|.|.   ...+++|.||||||||+|+||+.+|+++++|||+|++||++.....
T Consensus         3 ~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~   82 (199)
T d1dxya1           3 AAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD   82 (199)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC
T ss_pred             hHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchhh
Confidence            6899999999999999999999999999995   3468899999999999999999999999999999999998654311


Q ss_pred             ccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHH
Q 019081          191 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEA  270 (346)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~a  270 (346)
                                          .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++|
T Consensus        83 --------------------~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~a  142 (199)
T d1dxya1          83 --------------------HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQA  142 (199)
T ss_dssp             --------------------CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHH
T ss_pred             --------------------hcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHH
Confidence                                000124689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEecCCCCCCC-------------CCCCCCCCCceEEccCCCCC
Q 019081          271 IAHYLECGHLGGLGIDVAWTEPFD-------------PNDPILKFKNVLITPHVGGV  314 (346)
Q Consensus       271 L~~aL~~g~i~ga~lDV~~~EPl~-------------~~~pL~~~~nviiTPH~a~~  314 (346)
                      |++||++|+|+||+||||++||++             ..+|||.+|||++|||+|||
T Consensus       143 L~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         143 MLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             HHHHHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            999999999999999999999962             23568899999999999997

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.9e-52  Score=365.29  Aligned_cols=182  Identities=32%  Similarity=0.399  Sum_probs=158.7

Q ss_pred             ChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccc
Q 019081          112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH  189 (346)
Q Consensus       112 na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~--~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~  189 (346)
                      |+++||||+++++|++.|+++.++..++++.|...  .+.+|.|++|||+|+|.||+.+|+++++|||+|++||+.....
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP   80 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence            68999999999999999999999999999999753  4678999999999999999999999999999999999865431


Q ss_pred             cccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHH
Q 019081          190 SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE  269 (346)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~  269 (346)
                      .                    .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++
T Consensus        81 ~--------------------~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~  140 (188)
T d1sc6a1          81 L--------------------GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIP  140 (188)
T ss_dssp             C--------------------TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHH
T ss_pred             h--------------------hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhH
Confidence            0                    01112368999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEecCCCCCC----CCCCCCCCCCceEEccCCCC
Q 019081          270 AIAHYLECGHLGGLGIDVAWTEPF----DPNDPILKFKNVLITPHVGG  313 (346)
Q Consensus       270 aL~~aL~~g~i~ga~lDV~~~EPl----~~~~pL~~~~nviiTPH~a~  313 (346)
                      ||+++|++|+++||+||||++||+    |..+|||++|||++|||+||
T Consensus       141 aL~~aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         141 ALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             HHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             HHHHHHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            999999999999999999999998    44568999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=2.6e-52  Score=369.93  Aligned_cols=181  Identities=22%  Similarity=0.304  Sum_probs=162.1

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHhccc--CCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccc
Q 019081          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKL--GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ  191 (346)
Q Consensus       114 ~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~--~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~  191 (346)
                      ++||||++++||+++|++..+++.++++.|  ....|++|+||||||||+|+||+.+|+++++|||+|++||+...... 
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~-   80 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL-   80 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccccc-
Confidence            579999999999999999999999998865  45578999999999999999999999999999999999998654310 


Q ss_pred             cccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHH
Q 019081          192 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI  271 (346)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL  271 (346)
                                        ........++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||
T Consensus        81 ------------------~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL  142 (197)
T d1j4aa1          81 ------------------EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAV  142 (197)
T ss_dssp             ------------------HHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred             ------------------ccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHH
Confidence                              01111346899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEecCCCCCC-------------CCCCCCCCCCceEEccCCCC
Q 019081          272 AHYLECGHLGGLGIDVAWTEPF-------------DPNDPILKFKNVLITPHVGG  313 (346)
Q Consensus       272 ~~aL~~g~i~ga~lDV~~~EPl-------------~~~~pL~~~~nviiTPH~a~  313 (346)
                      ++||++|+|+||+||||++||.             +.++|||.+|||++|||+|+
T Consensus       143 ~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         143 IRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             HHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             HHHHhcccchheeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            9999999999999999999953             33467899999999999985

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=2.3e-51  Score=359.43  Aligned_cols=179  Identities=26%  Similarity=0.407  Sum_probs=163.5

Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC-CccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccc
Q 019081          113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ  191 (346)
Q Consensus       113 a~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~-~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~  191 (346)
                      |++||||++++||+++|++..+.+.+++++|... ...+|.||||||||+|.||+.+|+++++|||+|++||++..... 
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~-   79 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGP-   79 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSS-
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCcccCceEEEeccccccccceeeeeccccccccccccccccc-
Confidence            5789999999999999999999999999999754 34579999999999999999999999999999999998754310 


Q ss_pred             cccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHH
Q 019081          192 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI  271 (346)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL  271 (346)
                                       .    ....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||
T Consensus        80 -----------------~----~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL  138 (181)
T d1qp8a1          80 -----------------W----RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGV  138 (181)
T ss_dssp             -----------------S----CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHH
T ss_pred             -----------------e----eeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhh
Confidence                             0    0235899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEecCCCC-CCCCCCCCCCCCceEEccCCCC
Q 019081          272 AHYLECGHLGGLGIDVAWTE-PFDPNDPILKFKNVLITPHVGG  313 (346)
Q Consensus       272 ~~aL~~g~i~ga~lDV~~~E-Pl~~~~pL~~~~nviiTPH~a~  313 (346)
                      ++||++|+++||++|||+.| |++.++|||.+|||++|||+||
T Consensus       139 ~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         139 LRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             HHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             hhhcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence            99999999999999999755 6778899999999999999997

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=7e-25  Score=180.62  Aligned_cols=126  Identities=17%  Similarity=0.196  Sum_probs=103.7

Q ss_pred             CcceEEEeCCCCCCChhHHHHHHhcCCCeEEEc-CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEcCccCC
Q 019081           11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE   88 (346)
Q Consensus        11 ~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d   88 (346)
                      .|+|||++++..+...    +.++....+.+.. .+.+++.+.++++|+++++ ..++++++++++|+||+|+++|+|||
T Consensus         1 sMpkvli~~~~~~~~~----~~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d   76 (130)
T d1ygya2           1 SLPVVLIADKLAPSTV----AALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLD   76 (130)
T ss_dssp             CCCEEEECSSCCGGGG----TTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCT
T ss_pred             CCCEEEEECCCCHHHH----HHHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhcccceEEeeeccccc
Confidence            4899999987655321    2343322233322 3446778889999988875 56899999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhccc
Q 019081           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKL  143 (346)
Q Consensus        89 ~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~  143 (346)
                      |||+++|+++||.|+|+||+   |+.+||||++++||++.|++..+++.+|+|.|
T Consensus        77 ~IDl~~~~~~gI~V~n~p~~---~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          77 NVDVDAATARGVLVVNAPTS---ASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             TBCHHHHHHTTCEEECCTTS---SCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             chhHHHHHHCCceEEecCCC---CcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            99999999999999999998   78999999999999999999998888887776

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.85  E-value=6e-22  Score=163.05  Aligned_cols=118  Identities=11%  Similarity=0.226  Sum_probs=96.1

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcC---CCCCcccccCcceEEEEe-CCCCCHHHHhcCC--CCeEEEEcCcc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVV---PISDVPDVIANYHLCVVK-TMRLDSNCISRAN--QMKLIMQFGVG   86 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~--~Lk~I~~~~~G   86 (346)
                      |||++.+.. +.+..+.+++.+.+ ++++...   ..+++.+.++++|++++. ..++++++|+++|  +||+|+++|+|
T Consensus         1 MKIl~~~~~-~~e~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG   78 (131)
T d1dxya2           1 MKIIAYGAR-VDEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVG   78 (131)
T ss_dssp             CEEEECSCC-TTTHHHHHHHHHHH-CCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CEEEEEecC-cCcHHHHHHHHHHc-CeEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccc
Confidence            689988654 34455555555543 4555432   346777888999988774 6799999999865  89999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHH
Q 019081           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR  135 (346)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~  135 (346)
                      +||||+++|+++||.|+|+||+   ++.+||||++++||++.|++...+
T Consensus        79 ~d~ID~~~a~~~gI~V~n~P~~---~~~aVAE~~~~~~l~l~R~l~~~~  124 (131)
T d1dxya2          79 TDNIDMTAMKQYGIRLSNVPAY---TETAVHNMVYFSLQHLVDFLTKGE  124 (131)
T ss_dssp             CTTBCHHHHHHTTCEEECCTTS---SHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cccccccccccceEEEEeCCCC---CchhHHHHHHHHHHHHHcchHHHH
Confidence            9999999999999999999999   789999999999999999987744

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.85  E-value=1.5e-23  Score=170.34  Aligned_cols=121  Identities=17%  Similarity=0.235  Sum_probs=97.3

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCCCCCcccccCcceEEEEeCCCCCHHHHhcCCCCeEEEEcCccCCccch
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI   92 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~   92 (346)
                      |||+++.+..+   + .++.++.+  .++...      ..++++|++++  ++++++.++++|+||||++.|+|+||+|+
T Consensus         1 Mki~v~~~lp~---e-~~e~L~~~--~~v~~~------~d~~~~d~~l~--~~~~~~~l~~~~~Lk~i~~~~aG~D~i~~   66 (121)
T d1qp8a2           1 MELYVNFELPP---E-AEEELRKY--FKIVRG------GDLGNVEAALV--SRITAEELAKMPRLKFIQVVTAGLDHLPW   66 (121)
T ss_dssp             CEEECCSCCCH---H-HHHHHHTT--CEEECS------SCCTTBCCCCB--SCCCHHHHHHCTTCCCEEBSSSCCTTSCC
T ss_pred             CEEEEeCCCCH---H-HHHHhhhc--ceEeec------ccccccceeee--eccCHHHHhcCCCceEEEecccCcCCCCH
Confidence            68888876532   2 23344432  233321      23567787665  47999999999999999999999999999


Q ss_pred             hHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHH
Q 019081           93 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRL  172 (346)
Q Consensus        93 ~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l  172 (346)
                      +.+. +||.|+|+||+   |+.+||||++++||++.|+                         ++|+|+|.||+++|+++
T Consensus        67 ~~~~-~~i~v~n~~g~---~~~~vae~~~~~il~~~r~-------------------------l~i~G~G~iG~~iA~r~  117 (121)
T d1qp8a2          67 ESIP-PHVTVAGNAGS---NGYGNERVWRQMVMEAVRN-------------------------LITYATGGRPRNIAKRE  117 (121)
T ss_dssp             TTSC-TTSCEECCCSS---SSSSCHHHHHHHHHHHHHH-------------------------HHHHHTTSCCSCBCCGG
T ss_pred             HHhc-cCeEEEECCCC---ChHHHHHHHHHHHHHhcCC-------------------------EEEEcCCHHHHHHHHHH
Confidence            9885 69999999998   8899999999999999974                         57999999999999999


Q ss_pred             ccCC
Q 019081          173 RPFG  176 (346)
Q Consensus       173 ~~~G  176 (346)
                      ++||
T Consensus       118 ~a~G  121 (121)
T d1qp8a2         118 DYIG  121 (121)
T ss_dssp             GTC-
T ss_pred             HhcC
Confidence            9998

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.1e-21  Score=158.08  Aligned_cols=116  Identities=22%  Similarity=0.267  Sum_probs=90.4

Q ss_pred             CCCcceEEEeCCCCCCChhHHHHHHhcCCC--eEEEc--CCCCCcccccCcceEEEEe-CCCCCHHHHhcCCCCeEEEEc
Q 019081            9 DKNITRVLFCGPHFPASHNYTKEYLQNYPS--IQVDV--VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQF   83 (346)
Q Consensus         9 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~   83 (346)
                      |+++||||++++.++.    ..+.++....  ++...  ++.+++.+.++++|++++. ..++++++|+++|+||+|+++
T Consensus         1 ek~kmKILv~d~i~~~----a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~   76 (132)
T d1sc6a2           1 EKDKIKFLLVEGVHQK----ALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAF   76 (132)
T ss_dssp             CCSSCCEEECSCCCHH----HHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEEC
T ss_pred             CCCCCEEEEECCCCHH----HHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhccccceeEEEe
Confidence            4677899999987553    2344544322  22222  3456788899999998875 568999999999999999999


Q ss_pred             CccCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhH
Q 019081           84 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQ  131 (346)
Q Consensus        84 ~~G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~  131 (346)
                      |+||||||+++|+++||.|+|+||+   |+.+|||++++||++..|++
T Consensus        77 gvG~D~IDl~aa~~~gI~V~ntp~~---~~~svAe~~~lml~~~~~~~  121 (132)
T d1sc6a2          77 AIGTNQVDLDAAAKRGIPVFNAPFS---STQEAQENIGLEVAGKLIKY  121 (132)
T ss_dssp             SSCCTTBCHHHHHHTTCCEECCTTT---CSHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHHHhCCCEEEECCCC---chhHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999998   77999998766665444433

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.81  E-value=3.3e-20  Score=153.03  Aligned_cols=114  Identities=13%  Similarity=0.196  Sum_probs=95.0

Q ss_pred             ceEEEeCCCCCCChhHHHHHHhcCCCeEEEcCC---CCCcccccCcceEEEE-eCCCCCHHHHhcCC--CCeEEEEcCcc
Q 019081           13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVV-KTMRLDSNCISRAN--QMKLIMQFGVG   86 (346)
Q Consensus        13 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~-~~~~~~~~~l~~~~--~Lk~I~~~~~G   86 (346)
                      .||++.+.. +.+..+.+++.+.++++++...+   .+++.+.++++|++++ +..++++++|+++|  +||+|+++|+|
T Consensus         1 ~KI~~f~~~-~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG   79 (134)
T d1j4aa2           1 TKIFAYAIR-EDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG   79 (134)
T ss_dssp             CEEEECSCC-GGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSC
T ss_pred             CeEEEEecc-cccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCC
Confidence            378887654 44566777788887888886543   3567788899998887 46899999999754  79999999999


Q ss_pred             CCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHH
Q 019081           87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNE  133 (346)
Q Consensus        87 ~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~  133 (346)
                      |||||+++|+++||.|+|+|++      +||||++++||+++|++..
T Consensus        80 ~d~ID~~aa~~~gI~V~N~P~~------svae~a~~~ml~l~r~~~~  120 (134)
T d1j4aa2          80 VDNIDMAKAKELGFQITNVPVY------SYTTHAVRNMVVKAFDNNL  120 (134)
T ss_dssp             CTTBCHHHHHHTTCEEECCCCS------CCBHHHHHHHHHHHHHHHH
T ss_pred             cCccCHHHHHhCCeEEEECCCC------cHHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999987      4799999999999998754

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.78  E-value=3.4e-20  Score=152.00  Aligned_cols=111  Identities=14%  Similarity=0.204  Sum_probs=84.8

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEEc----CCCCCcccccCcceEEEEe-CCCCCHHHHhcCC-CCeEEEEcCc
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVK-TMRLDSNCISRAN-QMKLIMQFGV   85 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~-~Lk~I~~~~~   85 (346)
                      ++||+++.+..+   ... +.++...++.+..    .+.+++.+.++++|+++++ ..++++++|+++| +||+|+++|+
T Consensus         1 K~kVlit~~~~~---~~~-~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gv   76 (129)
T d1gdha2           1 KKKILITWPLPE---AAM-ARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSI   76 (129)
T ss_dssp             CCEEEESSCCCH---HHH-HHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESS
T ss_pred             CCEEEEeCCCCH---HHH-HHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeeccc
Confidence            478999976533   222 3333322333222    2335677788999988774 6799999999997 7999999999


Q ss_pred             cCCccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHH
Q 019081           86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR  129 (346)
Q Consensus        86 G~d~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R  129 (346)
                      |+||||+++|+++||+|+|+||+   |+.+|||+++++|+.+.+
T Consensus        77 G~d~ID~~~a~~~gI~V~ntpg~---~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          77 GFDHIDLDACKARGIKVGNAPHG---ATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---BHHHHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHhCCCEEEECCCC---CchHHHHHHHHHHHHHHH
Confidence            99999999999999999999998   889999987766655554

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.78  E-value=2.5e-19  Score=147.22  Aligned_cols=118  Identities=14%  Similarity=0.246  Sum_probs=91.0

Q ss_pred             cceEEEeCCCCCCChhHHHHHHhcCCCeEEEc-CCCCCccc-ccCcceEEEE-eCCCCCHHHHhcCCCCeEEEEcCccCC
Q 019081           12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPD-VIANYHLCVV-KTMRLDSNCISRANQMKLIMQFGVGLE   88 (346)
Q Consensus        12 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~d~~i~-~~~~~~~~~l~~~~~Lk~I~~~~~G~d   88 (346)
                      ||+|++.+.....   .....++....+.+.+ .+.+++.+ .+.+++++++ ...++++++|+++|+||+|+++|+|+|
T Consensus         1 mP~v~~ld~~d~~---~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d   77 (133)
T d1mx3a2           1 MPLVALLDGRDCT---VEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFD   77 (133)
T ss_dssp             CCEEEESSCSCCT---TTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCT
T ss_pred             CCEEEEecCCcch---hhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcc
Confidence            5788888754221   2244566655454433 23445544 4466776666 478999999999999999999999999


Q ss_pred             ccchhHHhhCCcEEEecCCCCCCChhhHHHHHHHHHHHHHHhHHHHHH
Q 019081           89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRM  136 (346)
Q Consensus        89 ~id~~~~~~~gI~v~n~p~~~~~na~~vAE~~~~~~l~~~R~~~~~~~  136 (346)
                      |||+++|+++||.|+|+||+   ++ ++|||++++||++.|++++..+
T Consensus        78 ~iD~~~~~~~gI~v~n~p~~---~~-~vAE~a~~lil~~~R~i~~a~~  121 (133)
T d1mx3a2          78 NIDIKSAGDLGIAVCNVPAA---SV-YSEQASIEMREEAAREIRRAIT  121 (133)
T ss_dssp             TBCHHHHHHTTCEEECCCST---TH-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEeeeeheeCCEEEEcCCCC---Cc-hhHHHHHHHHHHHHhhHHHHHh
Confidence            99999999999999999997   55 4799999999999999988654

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.77  E-value=7.3e-20  Score=156.47  Aligned_cols=111  Identities=18%  Similarity=0.237  Sum_probs=91.5

Q ss_pred             HHHHHhcCCCeEEEcCC-----CCCcccccCcceEEEEe---CCCCCHHHHhcCCCCeEEEEcCccCCccchhHHhhCCc
Q 019081           29 TKEYLQNYPSIQVDVVP-----ISDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGI  100 (346)
Q Consensus        29 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~i~~---~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI  100 (346)
                      .+++++.. +.+++..+     .+++.+.+.|+|++|+.   ..++++++|+++|+||+|+++|+|+||||+++|+++||
T Consensus        59 lr~~Le~~-GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI  137 (186)
T d2naca2          59 LRKYLESN-GHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNV  137 (186)
T ss_dssp             CHHHHHHT-TCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTC
T ss_pred             HHHHHHHC-CCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCC
Confidence            36677654 66665322     23466788999999985   46899999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCChhhHHHHH--------HHHHHHHHHhHHHHHHHHHhccc
Q 019081          101 KVARIPGDVTGNAASCAELT--------IYLMLGLLRKQNEMRMAIEQKKL  143 (346)
Q Consensus       101 ~v~n~p~~~~~na~~vAE~~--------~~~~l~~~R~~~~~~~~~~~~~~  143 (346)
                      .|+|+||+   |+.+||||+        +++++...|++...+..+++|+|
T Consensus       138 ~V~n~pg~---n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         138 TVAEVTYC---NSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             EEEECTTT---THCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             EEEECCCc---CcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            99999998   899999999        66777777877766666667766

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.1e-16  Score=134.80  Aligned_cols=120  Identities=19%  Similarity=0.199  Sum_probs=93.1

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      +..|.||+++|+|||.||+.+|+++++|||+|+++|+.+....+.                 .-......+++++++.+|
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A-----------------~~dG~~v~~~~~a~~~ad   81 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQA-----------------AMEGYEVTTMDEACQEGN   81 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-----------------HHTTCEECCHHHHTTTCS
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHh-----------------hcCceEeeehhhhhhhcc
Confidence            467999999999999999999999999999999999876431110                 000113468999999999


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcC-CCCCCCHHHHHHHHHhCCCeEEEEecC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA-RGGLLDYEAIAHYLECGHLGGLGIDVA  288 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s-Rg~~vd~~aL~~aL~~g~i~ga~lDV~  288 (346)
                      +|+.+    +.++++|+.+.|++||+|++|.|++ +..-+|.++|.+...+.+.....+|.|
T Consensus        82 ivvta----TGn~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y  139 (163)
T d1li4a1          82 IFVTT----TGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRY  139 (163)
T ss_dssp             EEEEC----SSCSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEE
T ss_pred             EEEec----CCCccchhHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEE
Confidence            98875    4578899999999999999999986 666699999987554443333344443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.39  E-value=4.6e-13  Score=111.97  Aligned_cols=104  Identities=21%  Similarity=0.294  Sum_probs=83.5

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      .-|+||++.|+|||.+|+.+|++++++|++|++++..+....+                 ..-......+++++++.+|+
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alq-----------------A~mdGf~v~~~~~a~~~aDi   81 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQ-----------------AVMEGFNVVTLDEIVDKGDF   81 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHH-----------------HHTTTCEECCHHHHTTTCSE
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHH-----------------HHhcCCccCchhHccccCcE
Confidence            5689999999999999999999999999999999886543211                 00111134789999999999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-CCHHHHHH
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH  273 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~  273 (346)
                      ++.+..    .+++|+.+.|.+||+|+++-|+++... +|.++|.+
T Consensus        82 ~vTaTG----n~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          82 FITCTG----NVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             EEECCS----SSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             EEEcCC----CCccccHHHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            999764    456899999999999999999998775 56666543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.35  E-value=2.4e-13  Score=114.42  Aligned_cols=114  Identities=18%  Similarity=0.304  Sum_probs=93.0

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEee
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~l  233 (346)
                      +|||||+|.||+.+|++|...|++|++|||+..+..                 .+..... ...+..|++++||+|++|+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~-----------------~~~~~~~~~~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIA-----------------DVIAAGAETASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH-----------------HHHHTTCEECSSHHHHHHHCSEEEECC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhH-----------------HHHHhhhhhcccHHHHHhCCCeEEEEc
Confidence            799999999999999999999999999999765421                 1111111 3468999999999999999


Q ss_pred             cCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          234 SLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       234 Plt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      |..+..+.++.  ...+..+++|.++|+++....-....+.+.+++..+.  .+|.
T Consensus        65 ~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (161)
T d1vpda2          65 PNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA  118 (161)
T ss_dssp             SSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             CCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence            98888877652  3577889999999999999988889999999988775  4564

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.29  E-value=1.3e-12  Score=109.87  Aligned_cols=148  Identities=16%  Similarity=0.225  Sum_probs=93.9

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP  234 (346)
                      +|||||+|.||..+|+.|+..|.+|++|||+........        +.+    ..+   ...+..+.+++||+|++++|
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~--------~~~----~~~---~~~~~~~~~~~~DiIilavp   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV--------ERQ----LVD---EAGQDLSLLQTAKIIFLCTP   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH--------HTT----SCS---EEESCGGGGTTCSEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHH--------Hhh----ccc---eeeeecccccccccccccCc
Confidence            799999999999999999999999999998754311000        000    001   11233467899999999999


Q ss_pred             CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC-CCCCCCCCCCCCceEEccCCCC
Q 019081          235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE-PFDPNDPILKFKNVLITPHVGG  313 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E-Pl~~~~pL~~~~nviiTPH~a~  313 (346)
                      . ..+..++. +....+++++++++++....-. ......+...-+..--+...+.. |..+...|+....+++||+-++
T Consensus        67 ~-~~~~~vl~-~l~~~l~~~~iv~~~~s~~~~~-~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~  143 (165)
T d2f1ka2          67 I-QLILPTLE-KLIPHLSPTAIVTDVASVKTAI-AEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT  143 (165)
T ss_dssp             H-HHHHHHHH-HHGGGSCTTCEEEECCSCCHHH-HHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred             H-hhhhhhhh-hhhhhcccccceeeccccchHH-HHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCC
Confidence            4 46666664 5667799999999997654322 23333444433332222222111 3333456777788999998665


Q ss_pred             CcHHHHHH
Q 019081          314 VTEHSYRS  321 (346)
Q Consensus       314 ~t~~~~~~  321 (346)
                      . ++..+.
T Consensus       144 ~-~~~~~~  150 (165)
T d2f1ka2         144 D-PEQLAC  150 (165)
T ss_dssp             C-HHHHHH
T ss_pred             C-HHHHHH
Confidence            4 344333

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.24  E-value=2.5e-12  Score=108.14  Aligned_cols=115  Identities=18%  Similarity=0.245  Sum_probs=92.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      ++|||||+|.||.++|++|...|++|.+|||+.....                 .+..... ...++.+++..+|+|+++
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~-----------------~~~~~~~~~~~~~~e~~~~~diii~~   64 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVD-----------------GLVAAGASAARSARDAVQGADVVISM   64 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHH-----------------HHHHTTCEECSSHHHHHTSCSEEEEC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhh-----------------hhhhhhccccchhhhhccccCeeeec
Confidence            5899999999999999999999999999998754321                 1111111 246889999999999999


Q ss_pred             ecCCccccCCCC--HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          233 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       233 lPlt~~T~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      +|..+..+.++.  ...+..+++|.++||++....-+...+.+.+++..+.  .+|.
T Consensus        65 v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          65 LPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             CSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             ccchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            998777666542  3467779999999999999998999999999998775  5676

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.18  E-value=4.8e-11  Score=100.39  Aligned_cols=150  Identities=23%  Similarity=0.214  Sum_probs=100.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHH-HhhcCCEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE-FASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV~  230 (346)
                      |+++|||+|.||.++|+.|+..|+  +|++||++......        ..+.+.++.      ...+.++ ....+|+|+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~--------a~~~~~~~~------~~~~~~~~~~~~~dlIi   67 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK--------AVDLGIIDE------GTTSIAKVEDFSPDFVM   67 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH--------HHHTTSCSE------EESCGGGGGGTCCSEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHH--------HHHhhcchh------hhhhhhhhhcccccccc
Confidence            579999999999999999988775  89999987543210        011111111      1123333 335799999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCC-CCCCCCCCCCCCceEEcc
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE-PFDPNDPILKFKNVLITP  309 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E-Pl~~~~pL~~~~nviiTP  309 (346)
                      +++|. ..+..++ .+....++++.++++++.....-.+++.+.+...-+.+--+..-+.. |..++..|+.-.++++||
T Consensus        68 la~p~-~~~~~vl-~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p  145 (171)
T d2g5ca2          68 LSSPV-RTFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTP  145 (171)
T ss_dssp             ECSCH-HHHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECC
T ss_pred             ccCCc-hhhhhhh-hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEec
Confidence            99994 3455555 34556689999999999876666667777777665666656554433 444556788888999999


Q ss_pred             CCCCCcHHHHH
Q 019081          310 HVGGVTEHSYR  320 (346)
Q Consensus       310 H~a~~t~~~~~  320 (346)
                      |-.. +.+..+
T Consensus       146 ~~~~-~~~~~~  155 (171)
T d2g5ca2         146 TKKT-DKKRLK  155 (171)
T ss_dssp             CSSS-CHHHHH
T ss_pred             CCCC-CHHHHH
Confidence            9664 444443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.07  E-value=4.8e-11  Score=101.46  Aligned_cols=123  Identities=9%  Similarity=0.130  Sum_probs=91.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~  231 (346)
                      -++|||||+|.||..+|++|...|++|++|||+..+.......        + ...... ......++.+.+..+|++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~--------~-~~~~~~~~a~~~~~~~~~~~~~~~ii~   72 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN--------E-AKGTKVLGAHSLEEMVSKLKKPRRIIL   72 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT--------T-TTTSSCEECSSHHHHHHHBCSSCEEEE
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh--------c-cccccccchhhhhhhhhhhcccceEEE
Confidence            4689999999999999999999999999999987542110000        0 000000 00123456677888999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      ++|..+.+..++ ...+..+++|.++||++....-+...+.+.+.+..+.  .+|.
T Consensus        73 ~~~~~~~v~~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda  125 (176)
T d2pgda2          73 LVKAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS  125 (176)
T ss_dssp             CSCTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred             ecCchHHHHHHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence            999887776654 4678889999999999999999999999999988775  4665

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.92  E-value=2.1e-10  Score=95.46  Aligned_cols=112  Identities=18%  Similarity=0.276  Sum_probs=84.3

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP  234 (346)
                      +|||||+|.||..+|++|...|..+ +++++..+..                 ......+...+..+.+.++|++++++|
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~i~~~~   63 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKAL-----------------RHQEEFGSEAVPLERVAEARVIFTCLP   63 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHH-----------------HHHHHHCCEECCGGGGGGCSEEEECCS
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHH-----------------HHHHHcCCcccccccccceeEEEeccc
Confidence            6999999999999999999888766 5665543311                 111111222334466778999999999


Q ss_pred             CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      ..++.... ....+..++++.++||++....-....+.+.+++..+.  .+|.
T Consensus        64 ~~~~v~~~-~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          64 TTREVYEV-AEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             SHHHHHHH-HHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             chhhhhhh-hccccccccccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            87665544 35678889999999999999999999999999988775  5676

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.88  E-value=1.3e-09  Score=91.31  Aligned_cols=102  Identities=22%  Similarity=0.285  Sum_probs=76.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccccc-CCcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDi  228 (346)
                      .....+|.|||.|..|...++.++++|.+|.++|.+..+.....   ..+.       ...... .....+++.+++||+
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~---~~~~-------~~~~~~~~~~~~l~~~~~~aDi   98 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE---TLFG-------SRVELLYSNSAEIETAVAEADL   98 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH---HHHG-------GGSEEEECCHHHHHHHHHTCSE
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHH---Hhhc-------ccceeehhhhhhHHHhhccCcE
Confidence            45678999999999999999999999999999998765421100   0000       001111 123568899999999


Q ss_pred             EEEeec-CCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          229 VVCCLS-LNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       229 V~~~lP-lt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      |+.++- ....+..+|.++.++.||||+++||+|
T Consensus        99 vI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1          99 LIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             EEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             EEEeeecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence            987653 256788999999999999999999997

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.82  E-value=3.1e-09  Score=87.50  Aligned_cols=83  Identities=22%  Similarity=0.257  Sum_probs=66.5

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       151 l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      ..-++|+||| +|.||+.+|+.|+..|++|.+||++...                             ..++.++.+|++
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----------------------------~~~~~~~~~~~v   57 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----------------------------VAESILANADVV   57 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----------------------------GHHHHHTTCSEE
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----------------------------ccchhhhhcccc
Confidence            4457999999 9999999999999999999999986432                             345667899999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      ++++|.. .+.. +-.+.+..+++++++|+++.-.
T Consensus        58 ~~~~~~~-~~~~-v~~~~~~~~~~~~iiiD~~Svk   90 (152)
T d2pv7a2          58 IVSVPIN-LTLE-TIERLKPYLTENMLLADLTSVK   90 (152)
T ss_dssp             EECSCGG-GHHH-HHHHHGGGCCTTSEEEECCSCC
T ss_pred             ccccchh-hhee-eeecccccccCCceEEEecccC
Confidence            9999853 3333 3356778899999999998643

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.77  E-value=7.4e-09  Score=85.58  Aligned_cols=99  Identities=14%  Similarity=0.297  Sum_probs=75.4

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEEe
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~~  232 (346)
                      ++||||+|+||+++++.+...|.+|++++|+..+..                 .+..+++  ...+.++++++||+|+++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~-----------------~l~~~~g~~~~~~~~~~~~~~dvIila   64 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSK-----------------EIAEQLALPYAMSHQDLIDQVDLVILG   64 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHH-----------------HHHHHHTCCBCSSHHHHHHTCSEEEEC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHH-----------------hhccccceeeechhhhhhhccceeeee
Confidence            799999999999999999988999999998754321                 1112222  236899999999999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      ++.  +    .-.+.++.++++..+|+++-|  +..+.|.+.|..+
T Consensus        65 vkp--~----~~~~vl~~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          65 IKP--Q----LFETVLKPLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             SCG--G----GHHHHHTTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             cch--H----hHHHHhhhcccceeEeccccc--ccHHHHHhhhccc
Confidence            963  2    125667889999999999766  5667777777543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.70  E-value=3e-08  Score=83.97  Aligned_cols=117  Identities=21%  Similarity=0.384  Sum_probs=75.9

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhh-h--cc--------ccccccccccC--Cc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA-V--KN--------GIIDDLVDEKG--CH  216 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~-~--~~--------~~~~~~~~~~~--~~  216 (346)
                      .+.-.+|.|||.|..|...++.++++|++|.++|.+......-...-..+- +  .+        +...+...+..  ..
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            355669999999999999999999999999999987754211110000000 0  00        00000000000  01


Q ss_pred             CCHHHHhhcCCEEEE--eecCCccccCCCCHHHHccCCCCcEEEEcC--CCCCCC
Q 019081          217 EDIFEFASKADVVVC--CLSLNKQTAGIVNKSFLSSMKKGSLLVNIA--RGGLLD  267 (346)
Q Consensus       217 ~~l~ell~~aDiV~~--~lPlt~~T~~li~~~~l~~mk~gailIN~s--Rg~~vd  267 (346)
                      ..+.+.+++||+|+.  .+| ...+..+|+++.++.||||+++|++|  +|+.+.
T Consensus       106 ~~l~~~l~~aDlVI~talip-G~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~E  159 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIP-GKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCP  159 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCT-TSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSST
T ss_pred             HHHHHHHHhhhhheeeeecC-CcccceeehHHHHHhcCCCcEEEEEeecCCCccc
Confidence            235667889999985  455 34578899999999999999999997  666543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.70  E-value=2.2e-09  Score=88.61  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=76.4

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeec
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lP  234 (346)
                      +|||||+|+||+.+|+.|+..|++|+++|+...+....                .........+.+|++++||+|++++|
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~----------------~~~~~~~~~~~~e~~~~~diIi~~v~   65 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIE----------------RARTVGVTETSEEDVYSCPVVISAVT   65 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHH----------------HHHHHTCEECCHHHHHTSSEEEECSC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHH----------------hhhcccccccHHHHHhhcCeEEEEec
Confidence            79999999999999999999999999998765432110                11111123568899999999999999


Q ss_pred             CCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEec
Q 019081          235 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV  287 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV  287 (346)
                      .... ...+ ....  -..+.++|+++.......+.+.+.+++..    .+|+
T Consensus        66 ~~~~-~~~~-~~~~--~~~~~~~id~st~~p~~~~~l~~~~~~~~----~~d~  110 (152)
T d1i36a2          66 PGVA-LGAA-RRAG--RHVRGIYVDINNISPETVRMASSLIEKGG----FVDA  110 (152)
T ss_dssp             GGGH-HHHH-HHHH--TTCCSEEEECSCCCHHHHHHHHHHCSSSE----EEEE
T ss_pred             CchH-HHHH-Hhhc--ccCCceeeccCcCCHHHHHHHHHHHhccC----CCcc
Confidence            6433 2221 1112  22467899999888777788888776543    3565

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.62  E-value=1.5e-08  Score=85.51  Aligned_cols=130  Identities=18%  Similarity=0.222  Sum_probs=87.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEee
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~l  233 (346)
                      .+|||||+|.||..+|++|...|++|.+|||++.+.......  ....+.   ...........++-..+..++.+...+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA--NASAPF---AGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH--TTTSTT---GGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc--CCcccc---ccchhhhhhhhHHHHhcccceEEEEee
Confidence            379999999999999999999999999999976542111000  000000   000000001122334456889999999


Q ss_pred             cCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCC
Q 019081          234 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW  289 (346)
Q Consensus       234 Plt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~  289 (346)
                      +........++ .....+++|.++||++....-+...+.+.|.+..+...-.-|+.
T Consensus        77 ~~~~~~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          77 QAGAATDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             CCSHHHHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             cCcchhhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            87666555553 45667899999999999999999999999998888643333333

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.57  E-value=4.8e-08  Score=81.91  Aligned_cols=123  Identities=20%  Similarity=0.163  Sum_probs=78.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC  231 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~  231 (346)
                      .||++|||.|.+|..+|..|...|++|.+|||+...... ... .+.......-........ ...++.|.+++||+|++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKE-IQD-RGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-HHH-HTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHH-cCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            379999999999999999999999999999996432110 000 000000000000000001 13578999999999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  280 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  280 (346)
                      ++|. ..++.++ ++.-..++++.+++ ++-|....+..+.+.++....
T Consensus        79 ~v~~-~~~~~~~-~~i~~~l~~~~~iv-~~~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          79 VVPA-IHHASIA-ANIASYISEGQLII-LNPGATGGALEFRKILRENGA  124 (184)
T ss_dssp             CSCG-GGHHHHH-HHHGGGCCTTCEEE-ESSCCSSHHHHHHHHHHHTTC
T ss_pred             EEch-hHHHHHH-HHhhhccCCCCEEE-EeCCCCccHHHHHHHHHHhcC
Confidence            9984 4444443 33445788999877 455555666667777776543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=6.7e-09  Score=85.41  Aligned_cols=88  Identities=14%  Similarity=0.046  Sum_probs=57.7

Q ss_pred             EEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEeec
Q 019081          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLS  234 (346)
Q Consensus       156 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~lP  234 (346)
                      +||||+|+||+.+++.|+.-+..+.+|+|+..+.                 ..+.+..+ ...++.+++++||+|++++|
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~-----------------~~l~~~~~~~~~~~~~~~~~~DiVil~v~   64 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRA-----------------RNLAEVYGGKAATLEKHPELNGVVFVIVP   64 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHH-----------------HHHHHHTCCCCCSSCCCCC---CEEECSC
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhh-----------------cchhhcccccccchhhhhccCcEEEEecc
Confidence            7999999999999999987443346899876542                 12222222 34577888999999999999


Q ss_pred             CCccccCCCCHHHHccCC-CCcEEEEcCCCCCC
Q 019081          235 LNKQTAGIVNKSFLSSMK-KGSLLVNIARGGLL  266 (346)
Q Consensus       235 lt~~T~~li~~~~l~~mk-~gailIN~sRg~~v  266 (346)
                      .. ..     .+.++.++ ++.++|+++-+...
T Consensus        65 d~-~i-----~~v~~~l~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          65 DR-YI-----KTVANHLNLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             TT-TH-----HHHHTTTCCSSCCEEECCSSSCG
T ss_pred             ch-hh-----hHHHhhhcccceeeeecccchhh
Confidence            53 22     34555564 79999999876543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.53  E-value=7.8e-08  Score=80.01  Aligned_cols=101  Identities=23%  Similarity=0.399  Sum_probs=71.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      .+.++++.|||.|.||+.+++.|...|+ ++.+++|+..+...-.             ..+......+.++.+.+.++|+
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~-------------~~~~~~~~~~~~~~~~l~~~Di   87 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELA-------------RDLGGEAVRFDELVDHLARSDV   87 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-------------HHHTCEECCGGGHHHHHHTCSE
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHH-------------HhhhcccccchhHHHHhccCCE
Confidence            5899999999999999999999999998 6999998754321000             0110111245688889999999


Q ss_pred             EEEeecCCccccCCCCHHHHccC------CCCcEEEEcCCCCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSM------KKGSLLVNIARGGLL  266 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~m------k~gailIN~sRg~~v  266 (346)
                      |+.+++   ....+|+++.++..      ++..+||+.|...-|
T Consensus        88 vi~ats---s~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~v  128 (159)
T d1gpja2          88 VVSATA---APHPVIHVDDVREALRKRDRRSPILIIDIANPRDV  128 (159)
T ss_dssp             EEECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSB
T ss_pred             EEEecC---CCCccccHhhhHHHHHhcccCCCeEEEeecCCCCc
Confidence            999965   45568888877532      234578887655433

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.49  E-value=3e-07  Score=79.31  Aligned_cols=108  Identities=19%  Similarity=0.263  Sum_probs=78.1

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh-cCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-KADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDi  228 (346)
                      +|.|+||+|-|+|++|+.+|+.|..+|++|+++|.+......                 .........+.++++. +|||
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~-----------------~~~~g~~~~~~~~~~~~~~DI   86 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAH-----------------AVALGHTAVALEDVLSTPCDV   86 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-----------------HHHTTCEECCGGGGGGCCCSE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHH-----------------HHhhcccccCcccccccccee
Confidence            699999999999999999999999999999999975432100                 0000112346677774 7999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ++-|     .+.+.|+.+...+++- -+++.-+-+++.+++ .-+.|+++.|.
T Consensus        87 ~iPc-----A~~~~I~~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI~  132 (201)
T d1c1da1          87 FAPC-----AMGGVITTEVARTLDC-SVVAGAANNVIADEA-ASDILHARGIL  132 (201)
T ss_dssp             EEEC-----SCSCCBCHHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTCE
T ss_pred             eecc-----cccccccHHHHhhhhh-heeeccCCCCcchhh-HHHHhcccceE
Confidence            8864     3557899999999973 356666677766664 45677777664

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.16  E-value=2.5e-07  Score=75.88  Aligned_cols=102  Identities=22%  Similarity=0.354  Sum_probs=65.9

Q ss_pred             eEEEEecCHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC  231 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~~  231 (346)
                      ++||||+|+||+++++.|..-| .+|.++||+..+..                 .+..+++  ...+.++ +.+||+|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~-----------------~l~~~~~~~~~~~~~~-v~~~Div~l   63 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRE-----------------RLEKELGVETSATLPE-LHSDDVLIL   63 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHH-----------------HHHHHTCCEEESSCCC-CCTTSEEEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHH-----------------Hhhhhccccccccccc-ccccceEEE
Confidence            7999999999999999876555 89999999864321                 1111212  1233333 578999999


Q ss_pred             eecCCccccCCCCHHHHccCC-CCcEEEEcCCCCCCCHHHHHHHHHh-CCCeE
Q 019081          232 CLSLNKQTAGIVNKSFLSSMK-KGSLLVNIARGGLLDYEAIAHYLEC-GHLGG  282 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk-~gailIN~sRg~~vd~~aL~~aL~~-g~i~g  282 (346)
                      +++. ...     .+.++.++ .+.++|++.-|-  ..+.|.+.|.. .++..
T Consensus        64 avkP-~~~-----~~v~~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir  108 (152)
T d1yqga2          64 AVKP-QDM-----EAACKNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVR  108 (152)
T ss_dssp             CSCH-HHH-----HHHHTTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEE
T ss_pred             ecCH-HHH-----HHhHHHHhhcccEEeecccCC--CHHHHHHHhCcCcceEe
Confidence            9972 121     23444444 478899887765  45667776643 34443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.15  E-value=3.2e-08  Score=77.50  Aligned_cols=97  Identities=15%  Similarity=0.215  Sum_probs=65.3

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      ..+|+||+|.|||.|.+|.+-|+.|..+|++|+++++...+.....      . ..+.+ .+...    .--++.+..++
T Consensus         7 ~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~------~-~~~~i-~~~~~----~~~~~dl~~~~   74 (113)
T d1pjqa1           7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVW------A-NEGML-TLVEG----PFDETLLDSCW   74 (113)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHH------H-TTTSC-EEEES----SCCGGGGTTCS
T ss_pred             EEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHH------H-hcCCc-eeecc----CCCHHHhCCCc
Confidence            3579999999999999999999999999999999987654321100      0 00000 01111    11124467788


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +|+.+..     ...+|++..+.+|+..++||++
T Consensus        75 lv~~at~-----d~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          75 LAIAATD-----DDTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             EEEECCS-----CHHHHHHHHHHHHHTTCEEEET
T ss_pred             EEeecCC-----CHHHHHHHHHHHHHcCCEEEeC
Confidence            8887643     2346778888889889999974

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.06  E-value=7.1e-07  Score=74.43  Aligned_cols=95  Identities=26%  Similarity=0.355  Sum_probs=69.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV  228 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  228 (346)
                      -|.+|+|+|||||.=|++=|..|+.-|++|++=-|...+..                 ..+.+.+ ...+++|..++||+
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~-----------------~~A~~~Gf~v~~~~eA~~~aDi   75 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATV-----------------AKAEAHGLKVADVKTAVAAADV   75 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHH-----------------HHHHHTTCEEECHHHHHHTCSE
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccH-----------------HHHhhhccccccHHHHhhhcCe
Confidence            47899999999999999999999999999887555332210                 0111111 34689999999999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      |.+.+|. +.-..+..++....||+|+.|. .++|
T Consensus        76 im~L~PD-~~q~~vy~~~I~p~lk~g~~L~-FaHG  108 (182)
T d1np3a2          76 VMILTPD-EFQGRLYKEEIEPNLKKGATLA-FAHG  108 (182)
T ss_dssp             EEECSCH-HHHHHHHHHHTGGGCCTTCEEE-ESCC
T ss_pred             eeeecch-HHHHHHHHHhhhhhcCCCcEEE-Eecc
Confidence            9999994 3334455667788899999764 3444

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=2.4e-06  Score=64.10  Aligned_cols=39  Identities=23%  Similarity=0.315  Sum_probs=35.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ++.||+|.|+|+|..|+++|+.|..+|++|+++|.+...
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            578999999999999999999999999999999986543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.04  E-value=3.3e-06  Score=72.26  Aligned_cols=162  Identities=14%  Similarity=0.110  Sum_probs=94.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccc----ccc--CCcCCHHHHhhcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV----DEK--GCHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~l~ell~~aD  227 (346)
                      .+|+|||+|.+|..+|..++..|++|++||.+...-..-..  ...+..+....+..    ...  ....++++.+..||
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~--g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d   78 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ--GKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT--TCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcc--cCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCC
Confidence            37999999999999999999999999999986432100000  00000000000000    000  02368899999999


Q ss_pred             EEEEeecCCccc-cCCCC-----------HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHh---CCCeEEEEe-cCCCC
Q 019081          228 VVVCCLSLNKQT-AGIVN-----------KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC---GHLGGLGID-VAWTE  291 (346)
Q Consensus       228 iV~~~lPlt~~T-~~li~-----------~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~---g~i~ga~lD-V~~~E  291 (346)
                      ++++|+| ||.. .+-.+           ...++..+++.++|..|.-.+-..+.++..+-+   +...+--+. +|.+|
T Consensus        79 ~i~i~Vp-TP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE  157 (202)
T d1mv8a2          79 VSFICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE  157 (202)
T ss_dssp             EEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred             EEEEecC-ccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhh
Confidence            9999999 4421 11111           124456778999999999888877777665432   222221122 25677


Q ss_pred             CCCCCCC---CCCCCceEEccCCCCCcHHHHHHH
Q 019081          292 PFDPNDP---ILKFKNVLITPHVGGVTEHSYRSM  322 (346)
Q Consensus       292 Pl~~~~p---L~~~~nviiTPH~a~~t~~~~~~~  322 (346)
                      =+.+.+.   +...|.+++    |+.++++.+.+
T Consensus       158 ~~~~G~a~~d~~~~~~iVi----G~~~~~~~~~~  187 (202)
T d1mv8a2         158 FLRESTAIKDYDFPPMTVI----GELDKQTGDLL  187 (202)
T ss_dssp             CCCTTSHHHHHHSCSCEEE----EESSHHHHHHH
T ss_pred             hhcccchhhhhcCCCeEEE----EeCCHHHHHHH
Confidence            6655543   345566655    44556555443

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.1e-05  Score=66.84  Aligned_cols=131  Identities=19%  Similarity=0.353  Sum_probs=90.9

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.||++.|||-+. +|+.++..|...|+.|+..+...                              .++.+.+++|
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t------------------------------~~l~~~~~~A   81 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------------------------KNLRHHVENA   81 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------------------------SCHHHHHHHC
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc------------------------------chhHHHHhhh
Confidence            4689999999999999 89999999999999999876421                              2577888999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+.++..    .++|..+.   +|+|+++||++--.+          ++|++.   -||-.++        ..-.--.
T Consensus        82 DivI~a~G~----p~~i~~~~---vk~g~vvIDvGi~~~----------~~~~~~---Gdvd~~~--------v~~~a~~  133 (166)
T d1b0aa1          82 DLLIVAVGK----PGFIPGDW---IKEGAIVIDVGINRL----------ENGKVV---GDVVFED--------AAKRASY  133 (166)
T ss_dssp             SEEEECSCC----TTCBCTTT---SCTTCEEEECCCEEC----------TTSCEE---CSBCHHH--------HHHHCSE
T ss_pred             hHhhhhccC----cccccccc---cCCCcEEEecCceec----------CCCCEE---eccccHh--------HHhheeE
Confidence            999999863    35787775   589999999974332          224443   2332111        0001237


Q ss_pred             EccCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 019081          307 ITPHVGGVTEHSYRSMAKVVGDVALQLHAG  336 (346)
Q Consensus       307 iTPH~a~~t~~~~~~~~~~~~~ni~~~~~g  336 (346)
                      +||=-||.-+-+...+.+..++..+++.+.
T Consensus       134 ~TPvPGGVGP~Tva~L~~N~v~a~~~~~~~  163 (166)
T d1b0aa1         134 ITPVPGGVGPMTVATLIENTLQACVEYHDP  163 (166)
T ss_dssp             ECCSSSSSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             eCCCCCcccHHHHHHHHHHHHHHHHHHhCc
Confidence            899988886655555555555555555443

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.96  E-value=1.3e-05  Score=70.02  Aligned_cols=109  Identities=23%  Similarity=0.293  Sum_probs=78.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHh-hcC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFA-SKA  226 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell-~~a  226 (346)
                      .+|.|+||.|-|+|++|+.+|+.|...|++|++.|.+....                 .......+ ...+.++++ ..|
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~c   97 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAV-----------------SAAVAEEGADAVAPNAIYGVTC   97 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH-----------------HHHHHHHCCEECCGGGTTTCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHH-----------------HHHHHhcCCcccCCcccccccc
Confidence            56999999999999999999999999999999998754321                 01111111 223445554 579


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ||++-|.     ..+.|+.+...+++- -+++-.+-.++.+.++- +.|.+..|.
T Consensus        98 DIl~PcA-----~~~~I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1          98 DIFAPCA-----LGAVLNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             SEEEECS-----CSCCBSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cEecccc-----cccccChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence            9998864     467899998888874 46777787888876654 556665554

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.94  E-value=3e-05  Score=65.54  Aligned_cols=169  Identities=9%  Similarity=0.069  Sum_probs=100.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aDiV  229 (346)
                      .+|+|||+|.+|..+|..++ .|++|++||.+...-..-..  ...+..+..+.+......    ...+......++|++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~--g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii   77 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINN--GLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELV   77 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHT--TCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhh--cccccchhhHHHHhhhhhhhhhccchhhhhhhccccc
Confidence            37999999999999998775 69999999987542100000  000000000001111100    124566677899999


Q ss_pred             EEeecCCcccc-CCCCH-------HHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCC-
Q 019081          230 VCCLSLNKQTA-GIVNK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL-  300 (346)
Q Consensus       230 ~~~lPlt~~T~-~li~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~-  300 (346)
                      ++++|...... .+.+.       +.+...+++.++|..|.-.+-..+.+..-+.+.++.      |.+|-+.+.+-++ 
T Consensus        78 ~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d  151 (196)
T d1dlja2          78 IIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYD  151 (196)
T ss_dssp             EECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHH
T ss_pred             cccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhh
Confidence            99999543322 22211       223345778899999988888888888877776653      5788887776554 


Q ss_pred             --CCCceEEccCCCCCcHHHHHHHHHHHHHHHHHH
Q 019081          301 --KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL  333 (346)
Q Consensus       301 --~~~nviiTPH~a~~t~~~~~~~~~~~~~ni~~~  333 (346)
                        ..|++++--+-.. +. ......+.+++.+...
T Consensus       152 ~~~p~riv~G~~~~~-~~-~~~~~~~~~~~l~~~~  184 (196)
T d1dlja2         152 NLYPSRIIVSCEEND-SP-KVKADAEKFALLLKSA  184 (196)
T ss_dssp             HHSCSCEEEECCTTS-CH-HHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCHhh-HH-HHHHHHHHHHHHHHhh
Confidence              4577766544222 22 2233445555555554

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.5e-05  Score=66.38  Aligned_cols=135  Identities=19%  Similarity=0.289  Sum_probs=88.6

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.+++||++.|||-+. +|+.+|..|...|+.|..++...                              .++.+..++|
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t------------------------------~~l~~~~~~a   83 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------------------------AHLDEEVNKG   83 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SSHHHHHTTC
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc------------------------------ccHHHHHhhc
Confidence            5689999999999987 89999999999999999987532                              2567788999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCCCCCCCCCCCCCCCceE
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL  306 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi  306 (346)
                      |+|+.+++.    .+++..+.   .|+|+++|+++--.+.|...    ...+++.|   ||-..+       . .-..-.
T Consensus        84 Divi~a~G~----~~~i~~~~---vk~g~iviDvgi~~~~~~~~----~~~~~~~g---dvd~~~-------v-~~~a~~  141 (170)
T d1a4ia1          84 DILVVATGQ----PEMVKGEW---IKPGAIVIDCGINYVPDDKK----PNGRKVVG---DVAYDE-------A-KERASF  141 (170)
T ss_dssp             SEEEECCCC----TTCBCGGG---SCTTCEEEECCCBC--------------CCBC---SBCHHH-------H-TTTCSE
T ss_pred             cchhhcccc----cccccccc---ccCCCeEeccCccccccccc----CCCCEEec---ccchHh-------h-hhhceE
Confidence            999999874    35677765   68999999997544433222    12334433   331111       0 112345


Q ss_pred             EccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 019081          307 ITPHVGGVTEHSYRSMAKVVGDVALQLH  334 (346)
Q Consensus       307 iTPH~a~~t~~~~~~~~~~~~~ni~~~~  334 (346)
                      +||-=+|.-+-+..-+.+..++-.++|+
T Consensus       142 ~TPvPGGVGp~Tva~L~~N~v~a~~r~l  169 (170)
T d1a4ia1         142 ITPVPGGVGPMTVAMLMQSTVESAKRFL  169 (170)
T ss_dssp             ECCSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCCCchhHHHHHHHHHHHHHHHHHhh
Confidence            8997677655554445555555555655

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.2e-06  Score=72.02  Aligned_cols=146  Identities=16%  Similarity=0.185  Sum_probs=87.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc---cchhhhccccc------cccc----cccCCcCCHH
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGII------DDLV----DEKGCHEDIF  220 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~---~~~~~~~~~~~------~~~~----~~~~~~~~l~  220 (346)
                      |+|+|||.|.||+.+|..+...|++|+.||++..........   .....++.+..      ++..    .......++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            699999999999999999999999999999976432111000   00000000000      0000    0011246788


Q ss_pred             HHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC-CCeEEEEecCCCCCCCCCCCC
Q 019081          221 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPI  299 (346)
Q Consensus       221 ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL  299 (346)
                      +.+++||+|+=++|-+-+.+.-+-++.-+.++++++|...+.+  +.-..|...+... ++.  ++=.|        +|-
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~i--g~Hff--------nP~  152 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTRQDRFA--GLHFF--------NPV  152 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSCGGGEE--EEEEC--------SST
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhccCHhHEE--eeccc--------ccc
Confidence            9999999999999987776655555555568889887655443  4455566655432 333  33333        222


Q ss_pred             CCCCceEEccCC
Q 019081          300 LKFKNVLITPHV  311 (346)
Q Consensus       300 ~~~~nviiTPH~  311 (346)
                      +.+|=|=+.||-
T Consensus       153 ~~~~lVEIv~g~  164 (192)
T d1f0ya2         153 PVMKLVEVIKTP  164 (192)
T ss_dssp             TTCCEEEEECCT
T ss_pred             CcccEEEEcCCC
Confidence            334556677763

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.3e-05  Score=65.32  Aligned_cols=98  Identities=19%  Similarity=0.179  Sum_probs=64.1

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~~~  232 (346)
                      .+|+|||.|.||..+|..|...|++|..++|...........       .   ........ ...+..+.+..+|+|+++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~D~iii~   70 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLV-------E---TDGSIFNESLTANDPDFLATSDLLLVT   70 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEE-------C---TTSCEEEEEEEESCHHHHHTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccc-------c---CCccccccccccchhhhhcccceEEEe
Confidence            379999999999999999999999999999876542111000       0   00000000 123455777899999999


Q ss_pred             ecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          233 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       233 lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      ++. .+++..+ +.....+++++.++.+.-|
T Consensus        71 vka-~~~~~~~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          71 LKA-WQVSDAV-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             SCG-GGHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             ecc-cchHHHH-HhhccccCcccEEeeccCc
Confidence            984 4554442 2233456788888887665

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.77  E-value=2e-06  Score=72.97  Aligned_cols=120  Identities=18%  Similarity=0.139  Sum_probs=74.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc-cchh--hhcccccc-ccccc----cCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGIID-DLVDE----KGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~-~~~~--~~~~~~~~-~~~~~----~~~~~~l~ell~~  225 (346)
                      ++|+|||.|.||+.+|..+...|++|+.||++.......... ...+  .+..+... ...+.    .....++ +.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence            579999999999999999999999999999976432110000 0000  00000000 00000    0011222 34789


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHH
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE  276 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~  276 (346)
                      ||+|+=++|-+.+.+.=+-++.-+.++++++|...+.+-  .-..|.+.+.
T Consensus        84 adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l--~i~~la~~~~  132 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALK  132 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCS
T ss_pred             cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccc--cHHHHHHhcc
Confidence            999999999887777666666777789999987765543  4455666554

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.73  E-value=1.3e-05  Score=68.82  Aligned_cols=95  Identities=24%  Similarity=0.312  Sum_probs=62.9

Q ss_pred             ccCC-CeEEEEecCHHHHHHHHHHcc------CCCEEEE-EcCCCccccccccccchhhhcccccccccccc-CCcCCHH
Q 019081          150 TLLG-KTVFILGFGNIGVELAKRLRP------FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIF  220 (346)
Q Consensus       150 ~l~g-~tvgIiG~G~IG~~vA~~l~~------~G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~  220 (346)
                      -+.| |+|+|||||.-|++=|..|+.      .|.+|++ ..+...+...  ..      .     +.+... ....+.+
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~k--A~------~-----dGf~v~~~~v~~v~  106 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAE--AR------A-----AGFSEENGTLGDMW  106 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHH--HH------H-----TTCCGGGTCEEEHH
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHH--HH------H-----cCCccCCCcccCHH
Confidence            3678 899999999999999999998      5577654 4332221100  00      0     111110 1234788


Q ss_pred             HHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEE
Q 019081          221 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN  259 (346)
Q Consensus       221 ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN  259 (346)
                      |+.++||+|.+.+|...+ ..+. ++....||+|+.|.=
T Consensus       107 EAv~~ADiVmiLlPDe~Q-~~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         107 ETISGSDLVLLLISDSAQ-ADNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             HHHHTCSEEEECSCHHHH-HHHH-HHHHHHSCTTCEEEE
T ss_pred             HHHhhCCEEEEecchHHH-HHHH-HHHHHhcCCCceeee
Confidence            999999999999995433 3355 467788999997753

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.73  E-value=7.3e-06  Score=65.02  Aligned_cols=76  Identities=16%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH-hhcCCEEEEe
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADVVVCC  232 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiV~~~  232 (346)
                      |++.|+|+|.+|+.+|+.|...|.+|+++|.++.........  ++       ............|+++ +.+||.|+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~--~~-------~~~~gd~~~~~~l~~a~i~~a~~vi~~   71 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY--AT-------HAVIANATEENELLSLGIRNFEYVIVA   71 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT--CS-------EEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh--CC-------cceeeecccchhhhccCCccccEEEEE
Confidence            678999999999999999999999999999876432111000  00       0000000123445555 7899999999


Q ss_pred             ecCCcc
Q 019081          233 LSLNKQ  238 (346)
Q Consensus       233 lPlt~~  238 (346)
                      +|....
T Consensus        72 ~~~~~~   77 (134)
T d2hmva1          72 IGANIQ   77 (134)
T ss_dssp             CCSCHH
T ss_pred             cCchHH
Confidence            986544

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=6.3e-05  Score=62.58  Aligned_cols=106  Identities=18%  Similarity=0.220  Sum_probs=68.4

Q ss_pred             CccccCCCeEEEEecCHH-HHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccccc--CCcCCHHHHh
Q 019081          147 TGETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEFA  223 (346)
Q Consensus       147 ~~~~l~g~tvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ell  223 (346)
                      .|.++.||++.|||-++| |+.+|.+|...|+.|...+............   ..+    ........  .....+++..
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~lk~~~   95 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGES---LKL----NKHHVEDLGEYSEDLLKKCS   95 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCC---SSC----CCCEEEEEEECCHHHHHHHH
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccc---eee----eeeccccccccchhHHhhcc
Confidence            467999999999999976 9999999999999999887543211000000   000    00000000  0123477888


Q ss_pred             hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          224 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      .++|+|+..+|...   ..+..++   .|+|+++||++-...
T Consensus        96 ~~aDIvIsavG~p~---~~i~~d~---ik~GavvIDvGi~~~  131 (171)
T d1edza1          96 LDSDVVITGVPSEN---YKFPTEY---IKEGAVCINFACTKN  131 (171)
T ss_dssp             HHCSEEEECCCCTT---CCBCTTT---SCTTEEEEECSSSCC
T ss_pred             ccCCEEEEccCCCc---cccChhh---cccCceEeecccccc
Confidence            89999999998532   1255554   589999999986543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=5.3e-05  Score=58.55  Aligned_cols=38  Identities=32%  Similarity=0.493  Sum_probs=34.2

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ..+.||||+|.|..|+.+|..++.+|++|+++|++...
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            45678999999999999999999999999999987654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.62  E-value=3.6e-06  Score=71.55  Aligned_cols=107  Identities=15%  Similarity=0.145  Sum_probs=65.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccc--ccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV--SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      .-++++|||.|..|.++|..|...|.+|..|+|+......-  ......| .+.   ..+........++++++++||+|
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~y-l~~---~~l~~~i~~t~~l~~a~~~ad~i   81 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLF-LKG---VQLASNITFTSDVEKAYNGAEII   81 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTT-STT---CBCCTTEEEESCHHHHHTTCSCE
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccc-ccc---cccccccccchhhhhccCCCCEE
Confidence            34689999999999999999999999999999864321000  0000000 000   00001111236899999999999


Q ss_pred             EEeecCCccccCCCCHHH----HccCCCCcEEEEcCCC
Q 019081          230 VCCLSLNKQTAGIVNKSF----LSSMKKGSLLVNIARG  263 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~----l~~mk~gailIN~sRg  263 (346)
                      ++++|. ...+.++..-.    ....+++..+|+++-|
T Consensus        82 iiavPs-~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          82 LFVIPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             EECSCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             EEcCcH-HHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            999993 34444332210    0123567889999877

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.60  E-value=2.7e-05  Score=65.21  Aligned_cols=103  Identities=21%  Similarity=0.227  Sum_probs=62.9

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccc----ccccchhhhcccccccccc-ccCCcCCHHHHhhcCCE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV----SCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDi  228 (346)
                      .+|+|||.|.+|.++|..|...|.+|..|.|........    .+....+.      ..... ......++++++++||+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~ad~   74 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLG------VKLNGVEIFWPEQLEKCLENAEV   74 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTT------BCCCSEEEECGGGHHHHHTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhc------chhccccccccccHHHHHhccch
Confidence            379999999999999999999999999997643221000    00000000      00000 00124688999999999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL  265 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~  265 (346)
                      |++++|. ...+.++. +....+++ ..+|.++.|..
T Consensus        75 Ii~avps-~~~~~~~~-~l~~~l~~-~~ii~~tkg~~  108 (180)
T d1txga2          75 VLLGVST-DGVLPVMS-RILPYLKD-QYIVLISKGLI  108 (180)
T ss_dssp             EEECSCG-GGHHHHHH-HHTTTCCS-CEEEECCCSEE
T ss_pred             hhcccch-hhhHHHHH-hhcccccc-ceecccccCcc
Confidence            9999994 44444433 23334555 45666666654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=6.4e-05  Score=62.91  Aligned_cols=112  Identities=17%  Similarity=0.196  Sum_probs=66.3

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      +.++.+|+|.|+|.|..|++++..+...|. +++.++|+.............+......... ........++.+.+.++
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   91 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVT-VTDLADQQAFAEALASA   91 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEE-EEETTCHHHHHHHHHTC
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceE-eeecccccchhhhhccc
Confidence            467899999999999999999999998898 6889998765421110000000000000000 00001123456778899


Q ss_pred             CEEEEeecCCccc---cCCCCHHHHccCCCCcEEEEcCC
Q 019081          227 DVVVCCLSLNKQT---AGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       227 DiV~~~lPlt~~T---~~li~~~~l~~mk~gailIN~sR  262 (346)
                      |+|+.+.|.....   ..++.  .+..++++.+++++.-
T Consensus        92 diiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~Y  128 (182)
T d1vi2a1          92 DILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECVY  128 (182)
T ss_dssp             SEEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECCC
T ss_pred             ceeccccCCccccccchhhhh--HHHhhhcchhhHHhhc
Confidence            9999999965332   12221  1344677777776643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.50  E-value=2.8e-05  Score=63.68  Aligned_cols=98  Identities=16%  Similarity=0.199  Sum_probs=59.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|.|||.|.||+.+|+.|..-|.+|+++||+..........   +.    ..............+++.+..+|+++.
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~---~~----~~~~~~~~~~~~~~~~~~i~~~~~~i~   73 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG---VQ----HSTPISLDVNDDAALDAEVAKHDLVIS   73 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTT---CT----TEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhc---cc----ccccccccccchhhhHhhhhccceeEe
Confidence            47999999999999999999999999999999986542111000   00    000000000012356677888999998


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      ++|....  ..   ......+.+..+++.+
T Consensus        74 ~~~~~~~--~~---~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          74 LIPYTFH--AT---VIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             CSCGGGH--HH---HHHHHHHHTCEEECSS
T ss_pred             eccchhh--hH---HHHHHHhhccceeecc
Confidence            8874322  11   1122234566677765

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.00015  Score=59.78  Aligned_cols=101  Identities=13%  Similarity=0.088  Sum_probs=64.6

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHH-Hhh
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFE-FAS  224 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~e-ll~  224 (346)
                      +..+.||+|.|+|.|..+++++..|...|++|.+++|+..+...-..              ......  ...++++ ...
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~--------------~~~~~~~~~~~~~~~~~~~   78 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK--------------LFAHTGSIQALSMDELEGH   78 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH--------------HTGGGSSEEECCSGGGTTC
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHH--------------HHhhccccccccccccccc
Confidence            45688999999999999999999999999999999998654211000              000000  1122222 236


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG  264 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~  264 (346)
                      ++|+|+.+.|.......  ....++.++++++++++--.+
T Consensus        79 ~~dliIN~Tp~G~~~~~--~~~~~~~~~~~~~v~D~vY~P  116 (170)
T d1nyta1          79 EFDLIINATSSGISGDI--PAIPSSLIHPGIYCYDMFYQK  116 (170)
T ss_dssp             CCSEEEECCSCGGGTCC--CCCCGGGCCTTCEEEESCCCS
T ss_pred             ccceeecccccCcccCC--CCCcHHHhccCcEEEEeecCC
Confidence            79999999997543221  111234467777777765444

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=8.3e-05  Score=53.63  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      |||||+|.|..|+.++..++.+|++|.++|+....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            69999999999999999999999999999986543

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.40  E-value=0.00069  Score=60.68  Aligned_cols=149  Identities=16%  Similarity=0.143  Sum_probs=86.5

Q ss_pred             hhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcccccc-
Q 019081          114 ASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV-  192 (346)
Q Consensus       114 ~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~-  192 (346)
                      .+++--++..+-.++++.......        ....+|.|+||.|=|+|++|+.+|+.|...|++|++++.+......+ 
T Consensus         5 eATG~GV~~~~~~~l~~~~~~~~~--------gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~   76 (293)
T d1hwxa1           5 SATGRGVFHGIENFIENASYMSIL--------GMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPD   76 (293)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHH--------TCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTT
T ss_pred             hHhHHHHHHHHHHHHHhcccchhc--------cCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhcccc
Confidence            455555555555555543221110        12357999999999999999999999999999998875432110000 


Q ss_pred             ---ccccchhhhccccccccccccCCcCCHHHHh-hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCH
Q 019081          193 ---SCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY  268 (346)
Q Consensus       193 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~  268 (346)
                         ......+...++-+.   .......+-++++ ..|||++-|.     +.+.|+.+...+++- -+++--+-|++ ..
T Consensus        77 Gld~~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~-t~  146 (293)
T d1hwxa1          77 GIDPKELEDFKLQHGTIL---GFPKAKIYEGSILEVDCDILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPT-TP  146 (293)
T ss_dssp             CCCHHHHHHHHHTTSSST---TCTTSCBCCSCGGGCCCSEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCB-CH
T ss_pred             ccchHHHHHHHHHcCCee---cccccccCCcccccCCccEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCC-Cc
Confidence               000000000000000   0001111223444 4899998763     567888888888874 47788888886 44


Q ss_pred             HHHHHHHHhCCCe
Q 019081          269 EAIAHYLECGHLG  281 (346)
Q Consensus       269 ~aL~~aL~~g~i~  281 (346)
                      ++ .+.|++..|.
T Consensus       147 eA-~~~L~~~gI~  158 (293)
T d1hwxa1         147 QA-DKIFLERNIM  158 (293)
T ss_dssp             HH-HHHHHHTTCE
T ss_pred             ch-HHHHHHCCCE
Confidence            44 4678777775

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.37  E-value=0.00014  Score=61.12  Aligned_cols=41  Identities=24%  Similarity=0.413  Sum_probs=37.6

Q ss_pred             ccccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       148 ~~~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      +.+|+||++.|.| -|.||+++|+.+...|++|+.++|+..+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~   59 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK   59 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHH
Confidence            6789999999999 6999999999999999999999997643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=8.5e-05  Score=61.12  Aligned_cols=99  Identities=22%  Similarity=0.222  Sum_probs=61.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .|.+|.|+|.|.+|...++.++.+|++|+++|++..+......  .+       .+............+......|+++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~--lG-------a~~~i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK--MG-------ADHYIATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH--HT-------CSEEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc--cC-------CcEEeeccchHHHHHhhhcccceEEE
Confidence            5789999999999999999999999999999987654211100  00       00011100011112334456788888


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      ++.....   ..-...++.++++..++.++-
T Consensus        98 ~~~~~~~---~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          98 CASSLTD---IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             CCSCSTT---CCTTTGGGGEEEEEEEEECCC
T ss_pred             EecCCcc---chHHHHHHHhhccceEEEecc
Confidence            7653221   112346777889888888853

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.32  E-value=0.0012  Score=57.50  Aligned_cols=123  Identities=24%  Similarity=0.231  Sum_probs=76.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhc--------cc-ccccccccc-C--Cc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK--------NG-IIDDLVDEK-G--CH  216 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~-~--~~  216 (346)
                      .+|.|+||.|=|+|++|+.+|+.|...|++|++++........+    .++.+.        ++ .+.+..... +  ..
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~----~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~  102 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRK----EGLNVELIQKNKGLTGPALVELFTTKDNAEFV  102 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECT----TCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccccccccc----ccccHHHHHHHhhcchhhHHHhhhhccCceEe
Confidence            46999999999999999999999999999998876432110000    000000        00 000000000 1  11


Q ss_pred             CCHHHHh-hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          217 EDIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       217 ~~l~ell-~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                      .+.++++ ..|||++-|.     +.+.|+.+...+|+- .+++-.+-+++ ..++ .+.|++..|..+
T Consensus       103 ~~~~~i~~~~~DIliPcA-----~~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~~~  162 (242)
T d1v9la1         103 KNPDAIFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVVVV  162 (242)
T ss_dssp             SSTTGGGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCEEE
T ss_pred             eCcchhccccccEEeecc-----hhccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeEEe
Confidence            2334555 5799999875     455788888888874 57777888886 5555 478888777643

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.27  E-value=0.0013  Score=56.99  Aligned_cols=124  Identities=21%  Similarity=0.168  Sum_probs=78.1

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHc-cCCCEEEEEcCCCccccc----cccccchhhhccccccccccccC-CcCCHHH
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQ----VSCQSSALAVKNGIIDDLVDEKG-CHEDIFE  221 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~e  221 (346)
                      +.++.|++|.|=|+|++|+.+|+.|. .+|++|++++.+......    +......+...++   ....... ...+.++
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~---~~~~~~~~~~~~~~~  102 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHG---TVVTYPKGERITNEE  102 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSS---CSTTCSSCEEECHHH
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhc---ceeccccceeecccc
Confidence            46789999999999999999999984 689999987643211000    0000000000000   0000111 2245667


Q ss_pred             Hhh-cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeE
Q 019081          222 FAS-KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG  282 (346)
Q Consensus       222 ll~-~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g  282 (346)
                      ++. .|||++-|     ...+.|+.+...+++- .+++-.+-+++- .++ .+.|.+..|..
T Consensus       103 ~~~~~~DI~~Pc-----A~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI~~  156 (234)
T d1b26a1         103 LLELDVDILVPA-----ALEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGILV  156 (234)
T ss_dssp             HHTSCCSEEEEC-----SCTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTCEE
T ss_pred             ccccccceeecc-----hhcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCeEE
Confidence            775 89999775     3557899999999985 467788888864 444 47788777753

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.16  E-value=0.0026  Score=55.23  Aligned_cols=125  Identities=24%  Similarity=0.296  Sum_probs=75.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHc-cCCCEEEEEcCCCccccccc----cccchhhhccccccccccccCCcCCHHHHh
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVS----CQSSALAVKNGIIDDLVDEKGCHEDIFEFA  223 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  223 (346)
                      .+|.|+||.|-|+|++|..+|+.|. .+|++|+++..+......+.    .....+....+.+....  .....+.++++
T Consensus        28 ~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~--~~~~~~~~~i~  105 (239)
T d1gtma1          28 DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFP--GATNITNEELL  105 (239)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCT--TSEEECHHHHH
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCC--CCeeecccccc
Confidence            3599999999999999999999885 68999887643321100000    00000000000000000  00123456665


Q ss_pred             -hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEE
Q 019081          224 -SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL  283 (346)
Q Consensus       224 -~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga  283 (346)
                       .+|||++-|.     +.+.|+.+...+++- -+++-.+-+++- .++ .+.|.+..|..+
T Consensus       106 ~~~~DIl~PcA-----~~~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI~~i  158 (239)
T d1gtma1         106 ELEVDVLAPAA-----IEEVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGILQI  158 (239)
T ss_dssp             HSCCSEEEECS-----CSCCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCEEE
T ss_pred             cccccEEeecc-----ccccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCCEEe
Confidence             6899998865     456888888888864 467788888864 444 477777777543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.11  E-value=0.00021  Score=56.20  Aligned_cols=91  Identities=16%  Similarity=0.204  Sum_probs=56.0

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCc---CCHHHH-hhcCCEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEF-ASKADVVV  230 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~el-l~~aDiV~  230 (346)
                      +|.|+|+|.+|+.+|+.|...|.+|+++|.++......... .+.        ..  -.+..   ..|+++ ++++|.++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-~~~--------~v--i~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-IDA--------LV--INGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-CSS--------EE--EESCTTSHHHHHHTTTTTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-hhh--------hh--ccCcccchhhhhhcChhhhhhhc
Confidence            78999999999999999999999999999875432110000 000        00  01122   233333 57899999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEE
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLV  258 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailI  258 (346)
                      ...+..  ..+++-....+.+.+..+++
T Consensus        71 ~~t~~d--~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          71 AVTGKE--EVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             ECCSCH--HHHHHHHHHHHHTTCCCEEE
T ss_pred             ccCCcH--HHHHHHHHHHHHcCCceEEE
Confidence            887643  23344444555666665554

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.10  E-value=0.00021  Score=58.94  Aligned_cols=64  Identities=20%  Similarity=0.322  Sum_probs=44.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      -+|||||+|.||+..++.++.. ++++++ +|++......                  . ......++++++.+.|+|++
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~------------------~-~~~~~~~~~~~~~~~D~Vvi   64 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK------------------T-PVFDVADVDKHADDVDVLFL   64 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS------------------S-CEEEGGGGGGTTTTCSEEEE
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc------------------c-ccccchhhhhhccccceEEE
Confidence            4799999999999999999875 777664 5555432100                  0 00023456677789999999


Q ss_pred             eecCC
Q 019081          232 CLSLN  236 (346)
Q Consensus       232 ~lPlt  236 (346)
                      ++|..
T Consensus        65 ~tp~~   69 (170)
T d1f06a1          65 CMGSA   69 (170)
T ss_dssp             CSCTT
T ss_pred             eCCCc
Confidence            99854

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.07  E-value=0.0014  Score=57.61  Aligned_cols=128  Identities=20%  Similarity=0.240  Sum_probs=71.3

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccc----cccccchhhh-----ccccccccccccC-CcC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ----VSCQSSALAV-----KNGIIDDLVDEKG-CHE  217 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~-~~~  217 (346)
                      +.+|.|+||.|=|+|++|+.+|+.|...|++|+++..+......    .......+..     ...-........+ ...
T Consensus        31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (255)
T d1bgva1          31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  110 (255)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee
Confidence            45799999999999999999999999999999865322100000    0000000000     0000000000000 011


Q ss_pred             CHHHH-hhcCCEEEEeecCCccccCCCCHHHHccCCC-Cc-EEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          218 DIFEF-ASKADVVVCCLSLNKQTAGIVNKSFLSSMKK-GS-LLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       218 ~l~el-l~~aDiV~~~lPlt~~T~~li~~~~l~~mk~-ga-ilIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      +.+++ -.+|||++-|     .+.+.|+.+...+++. ++ +++--+-+++-.+ +.-..|+++.|.
T Consensus       111 ~~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI~  171 (255)
T d1bgva1         111 PGEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNMV  171 (255)
T ss_dssp             ETCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTCE
T ss_pred             chhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCCE
Confidence            11222 2579998754     4677899988888863 45 6666677776554 433346665564

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.07  E-value=0.00013  Score=60.55  Aligned_cols=108  Identities=11%  Similarity=0.109  Sum_probs=62.6

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      +.++.||++.|+|.|..+++++..|...| +|.+++|+..+...-...   +....  ...... .....+++..+..+|
T Consensus        13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~---~~~~~--~~~~~~-~~~~~~~~~~~~~~d   85 (177)
T d1nvta1          13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKE---IAEKL--NKKFGE-EVKFSGLDVDLDGVD   85 (177)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHH---HHHHH--TCCHHH-HEEEECTTCCCTTCC
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHH---HHHhh--chhhhh-hhhhhhhhhccchhh
Confidence            35689999999999999999999998888 999999986542110000   00000  000000 001234556677899


Q ss_pred             EEEEeecCCcccc-CCCCHHHHccCCCCcEEEEcCC
Q 019081          228 VVVCCLSLNKQTA-GIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       228 iV~~~lPlt~~T~-~li~~~~l~~mk~gailIN~sR  262 (346)
                      +++.+.|...... ..-..-.+..++++.+++++.-
T Consensus        86 liIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y  121 (177)
T d1nvta1          86 IIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIY  121 (177)
T ss_dssp             EEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCC
T ss_pred             hhccCCcccccccccccchhhhhccCcccceeeecC
Confidence            9999998643211 1100112334556666666643

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00034  Score=57.04  Aligned_cols=65  Identities=15%  Similarity=0.151  Sum_probs=44.2

Q ss_pred             eEEEEecCHHHHH-HHHHHcc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEE
Q 019081          155 TVFILGFGNIGVE-LAKRLRP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (346)
Q Consensus       155 tvgIiG~G~IG~~-vA~~l~~-~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  229 (346)
                      ++||||+|.+|+. ....++. -+++++ ++|++.....                 .....++  ...++++++++.|+|
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~~~D~V   65 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKAL-----------------PICESWRIPYADSLSSLAASCDAV   65 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHH-----------------HHHHHHTCCBCSSHHHHHTTCSEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhh-----------------hhhhcccccccccchhhhhhcccc
Confidence            7999999999986 4565654 478865 5677654321                 1111111  246788999999999


Q ss_pred             EEeecCC
Q 019081          230 VCCLSLN  236 (346)
Q Consensus       230 ~~~lPlt  236 (346)
                      ++++|..
T Consensus        66 ~I~tp~~   72 (164)
T d1tlta1          66 FVHSSTA   72 (164)
T ss_dssp             EECSCTT
T ss_pred             cccccch
Confidence            9999843

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00055  Score=57.56  Aligned_cols=75  Identities=16%  Similarity=0.154  Sum_probs=51.8

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEE
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVV  229 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  229 (346)
                      ..|+|.|+| .|.||+.+++.|...|++|.++.|+..+.+.....  .        .+... ......++.++++.+|+|
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~--~--------~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR--P--------AHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCC--C--------SEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccc--c--------cccccccccchhhHHHHhcCCCEE
Confidence            468999999 69999999999999999999999876542211100  0        01110 001235677889999999


Q ss_pred             EEeecCC
Q 019081          230 VCCLSLN  236 (346)
Q Consensus       230 ~~~lPlt  236 (346)
                      +.++...
T Consensus        72 i~~~g~~   78 (205)
T d1hdoa_          72 IVLLGTR   78 (205)
T ss_dssp             EECCCCT
T ss_pred             EEEeccC
Confidence            9888643

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.97  E-value=0.00041  Score=63.72  Aligned_cols=93  Identities=16%  Similarity=0.268  Sum_probs=65.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhhcC
Q 019081          153 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA  226 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~-~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a  226 (346)
                      -++++|||.|..++.-++.+. -++. +|.+|+|++.+......             .+....+    ...+++++++.|
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~-------------~l~~~~g~~v~~~~s~~eav~~A  194 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIA-------------NLKEYSGLTIRRASSVAEAVKGV  194 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHH-------------HHTTCTTCEEEECSSHHHHHTTC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHH-------------hhhhccCCCceecCCHHHHHhcC
Confidence            359999999999998887654 4666 69999997654211110             1111111    246899999999


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      |+|+.+++ ++.+.-+++.+.   +|||+.+..++.
T Consensus       195 DIi~t~Ta-s~s~~Pv~~~~~---l~pG~hI~aiGs  226 (340)
T d1x7da_         195 DIITTVTA-DKAYATIITPDM---LEPGMHLNAVGG  226 (340)
T ss_dssp             SEEEECCC-CSSEEEEECGGG---CCTTCEEEECSC
T ss_pred             Cceeeccc-cCCCCcccchhh---cCCCCEEeeccc
Confidence            99999886 445566777664   699998888763

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.95  E-value=0.00061  Score=55.34  Aligned_cols=105  Identities=12%  Similarity=0.106  Sum_probs=61.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhcCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKAD  227 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aD  227 (346)
                      +.+||+|||.|.+|+.+|..++..|. +++.+|.+.......... ..+.      ........   ...+.++.++.||
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~D-l~~~------~~~~~~~~~~~~~~~~~~~~~~ad   78 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALD-LSHV------TSVVDTNVSVRAEYSYEAALTGAD   78 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHH-HHHH------HHHTTCCCCEEEECSHHHHHTTCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHH-Hhhh------ccccCCeeEEeccCchhhhhcCCC
Confidence            45799999999999999988776564 899999865432111100 0000      00000000   1245678899999


Q ss_pred             EEEEeecCC--cc------ccC-CC--C-------HHHHccCCCCcEEEEcCCC
Q 019081          228 VVVCCLSLN--KQ------TAG-IV--N-------KSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       228 iV~~~lPlt--~~------T~~-li--~-------~~~l~~mk~gailIN~sRg  263 (346)
                      +|+++....  +.      |+. ++  |       .+.+....|.+++++++-.
T Consensus        79 iVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          79 CVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             EEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             eEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            999987421  11      221 11  1       1224445689999998654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.00029  Score=58.47  Aligned_cols=37  Identities=32%  Similarity=0.372  Sum_probs=33.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.|++..+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHH
T ss_pred             CCCEEEEECCCccchhheeccccccccccccccccccc
Confidence            58899999999999999999999998 79999986543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.89  E-value=0.00072  Score=55.09  Aligned_cols=37  Identities=32%  Similarity=0.546  Sum_probs=33.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .|.+|.|+|.|.||...++.++.+|++|+++|++..+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r   62 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRR   62 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHH
Confidence            5679999999999999999999999999999987544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00069  Score=55.44  Aligned_cols=93  Identities=23%  Similarity=0.270  Sum_probs=60.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHh-----
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-----  223 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-----  223 (346)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.|++..+......             -.++...  ...+..+..     
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~-------------~Ga~~~~~~~~~~~~~~~~~~~~   92 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE-------------IGADLVLQISKESPQEIARKVEG   92 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH-------------TTCSEEEECSSCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH-------------hCCcccccccccccccccccccc
Confidence            46799999999999999999999999 79999987654211000             0011111  123333332     


Q ss_pred             ---hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          224 ---SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       224 ---~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                         ...|+|+-+++. +.+    -...++.+++|..++.++-
T Consensus        93 ~~g~g~Dvvid~~G~-~~~----~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          93 QLGCKPEVTIECTGA-EAS----IQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HHTSCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSC
T ss_pred             cCCCCceEEEeccCC-chh----HHHHHHHhcCCCEEEEEec
Confidence               247999888763 221    2456777899988888864

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.85  E-value=0.00023  Score=58.92  Aligned_cols=40  Identities=20%  Similarity=0.213  Sum_probs=35.5

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ..+.||+|.|+|.|..+++++..|...+.+|++++|+..+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~   53 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSK   53 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHH
Confidence            4688999999999999999999988877899999998644

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.82  E-value=0.00053  Score=55.33  Aligned_cols=104  Identities=18%  Similarity=0.188  Sum_probs=59.3

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCC
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD  227 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD  227 (346)
                      -.+++|+|||.|.+|..+|..+...|.  ++..||+......... .+..+.      ........ ....-.+.+++||
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a-~Dl~~~------~~~~~~~~~~~~~d~~~l~daD   76 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDA-MDFNHG------KVFAPKPVDIWHGDYDDCRDAD   76 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH-HHHHHH------TTSSSSCCEEEECCGGGTTTCS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchh-ccHhhC------ccccCCCeEEEECCHHHhccce
Confidence            457899999999999999998876554  8999998653311100 000000      00000000 0122236688999


Q ss_pred             EEEEeecCCccccCC-----C--C-------HHHHccCCCCcEEEEcCC
Q 019081          228 VVVCCLSLNKQTAGI-----V--N-------KSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       228 iV~~~lPlt~~T~~l-----i--~-------~~~l~~mk~gailIN~sR  262 (346)
                      +|+++.-.. ...+.     +  |       .+.+.+..|.+++|+++-
T Consensus        77 vvvitag~~-~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          77 LVVICAGAN-QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             EEEECCSCC-CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             eEEEecccc-cccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            999976532 22222     1  1       123444568899999843

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.81  E-value=0.00066  Score=54.27  Aligned_cols=101  Identities=12%  Similarity=0.147  Sum_probs=58.1

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEEE
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV  230 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~  230 (346)
                      +|+|||.|.+|..+|..+...|.  ++..||.+.......... ..+.      ........  ...+..+.+++||+|+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d-~~~~------~~~~~~~~~i~~~~~~~~~~dadvvv   74 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALD-MYES------GPVGLFDTKVTGSNDYADTANSDIVI   74 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHH-HHTT------HHHHTCCCEEEEESCGGGGTTCSEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhh-hhcc------cchhcccceEEecCCHHHhcCCeEEE
Confidence            79999999999999999887664  899999876432111100 0000      00000001  1123456789999999


Q ss_pred             Eee--cCCcc-ccC-CC--C-------HHHHccCCCCcEEEEcCC
Q 019081          231 CCL--SLNKQ-TAG-IV--N-------KSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       231 ~~l--Plt~~-T~~-li--~-------~~~l~~mk~gailIN~sR  262 (346)
                      ++.  |..+. ++. ++  |       .+.+....|++++++++.
T Consensus        75 itag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          75 ITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence            985  33321 111 00  1       123444568999999865

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.79  E-value=0.00023  Score=58.60  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=33.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      .+++|.|+|.|..|++++..|+..|+ +|.+++|+..+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHH
Confidence            57899999999999999999999998 69999997653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.71  E-value=0.00077  Score=54.26  Aligned_cols=101  Identities=15%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (346)
                      ..++|+|||.|.+|..+|..|...|  -++..||+......... .+..+.       .......  ...+.++ +++||
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a-~Dl~~a-------~~~~~~~~~~~~d~~~-~~~ad   74 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDA-LDLEDA-------QAFTAPKKIYSGEYSD-CKDAD   74 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH-HHHHGG-------GGGSCCCEEEECCGGG-GTTCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHH-HHHhcc-------ccccCCceEeeccHHH-hcccc
Confidence            3569999999999999999888655  58999998653211000 000000       0000000  1234444 68999


Q ss_pred             EEEEeecCCccccCCC-------C-------HHHHccCCCCcEEEEcCC
Q 019081          228 VVVCCLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       228 iV~~~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~sR  262 (346)
                      +|+++... +...+.-       |       .+.+..-.|.+++|+++-
T Consensus        75 ivvitag~-~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          75 LVVITAGA-PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             EEEECCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EEEEeccc-ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            99997642 2222211       1       123555678899999874

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.71  E-value=0.00061  Score=55.59  Aligned_cols=105  Identities=15%  Similarity=0.218  Sum_probs=59.0

Q ss_pred             CeEEEEecCHHHHH-HHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh-cCC
Q 019081          154 KTVFILGFGNIGVE-LAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS-KAD  227 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~-~aD  227 (346)
                      -++||||+|.+|+. ....++.+ ++++.++|++......                 ..+.+.   ...+.+++++ +.|
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~-----------------~~~~~~~~~~~~~~~~ll~~~iD   64 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGT-----------------LATRYRVSATCTDYRDVLQYGVD   64 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHH-----------------HHHHTTCCCCCSSTTGGGGGCCS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHH-----------------HHHhcccccccccHHHhcccccc
Confidence            37999999999976 56677655 6788888876543211                 111111   2356677774 679


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCC-cEEEEcCCC-CCCCHHHHHHHHHhCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKG-SLLVNIARG-GLLDYEAIAHYLECGHL  280 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~g-ailIN~sRg-~~vd~~aL~~aL~~g~i  280 (346)
                      +|++++|....  .-+-...+   +.| .+++.-==+ .+-+.+.|.++.++..+
T Consensus        65 ~V~I~tp~~~H--~~~~~~al---~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          65 AVMIHAATDVH--STLAAFFL---HLGIPTFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             EEEECSCGGGH--HHHHHHHH---HTTCCEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             eeccccccccc--cccccccc---ccccccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            99999885322  11122233   333 345433111 11234667777665544

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.69  E-value=0.00091  Score=60.78  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=62.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV  229 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~-~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV  229 (346)
                      -+++||||.|..++.-++.+.. +.. +|.+|+|+..+......             ....... ...+.++.+..||+|
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~-------------~~~~~~~~~~~~~~~a~~~aDiV  191 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVS-------------YCEDRGISASVQPAEEASRCDVL  191 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHH-------------HHHHTTCCEEECCHHHHTSSSEE
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHH-------------HHHhcCCccccchhhhhccccEE
Confidence            3589999999999999887763 555 79999987644211110             1111111 124567888999999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      +.+.|   .+..+++.+.   +|||+.++.++.
T Consensus       192 ~taT~---s~~P~~~~~~---l~~G~hv~~iGs  218 (320)
T d1omoa_         192 VTTTP---SRKPVVKAEW---VEEGTHINAIGA  218 (320)
T ss_dssp             EECCC---CSSCCBCGGG---CCTTCEEEECSC
T ss_pred             EEecc---Ccccccchhh---cCCCCeEeecCC
Confidence            98865   5566887664   799999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00049  Score=56.25  Aligned_cols=93  Identities=17%  Similarity=0.210  Sum_probs=56.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCC---HHHHhhcCCE
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED---IFEFASKADV  228 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDi  228 (346)
                      .|.+|.|+|.|.||...++.++.+|+++++++++..+..... .            -.++......+   ........|+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~-~------------lGad~~i~~~~~~~~~~~~~~~D~   96 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-A------------LGADEVVNSRNADEMAAHLKSFDF   96 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-H------------HTCSEEEETTCHHHHHTTTTCEEE
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHh-c------------cCCcEEEECchhhHHHHhcCCCce
Confidence            478999999999999999999999999999987654321000 0            00010001111   1222345777


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      ++-++.....     -...++.++++..++.++.
T Consensus        97 vid~~g~~~~-----~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          97 ILNTVAAPHN-----LDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             EEECCSSCCC-----HHHHHTTEEEEEEEEECCC
T ss_pred             eeeeeecchh-----HHHHHHHHhcCCEEEEecc
Confidence            7777753221     1345666777777777753

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=96.64  E-value=0.0025  Score=55.45  Aligned_cols=65  Identities=20%  Similarity=0.276  Sum_probs=55.8

Q ss_pred             cCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          216 HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       216 ~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ..+..|++++||+|++++|..+.+..++ ++....+++|++++++|.........+.+.|++..+.
T Consensus       132 ~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         132 TSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             ESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             ECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence            3788999999999999999766677777 6778889999999999998888888888888877664

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.61  E-value=0.00073  Score=54.42  Aligned_cols=101  Identities=23%  Similarity=0.219  Sum_probs=57.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  229 (346)
                      |+|+|||.|.+|..+|-.+...|+  ++..||.+........ .+..+..      .......  ...+. +.+++||+|
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~-~Dl~~a~------~~~~~~~~~~~~d~-~~l~~adiV   73 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQ-IDFQDAM------ANLEAHGNIVINDW-AALADADVV   73 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH-HHHHHHG------GGSSSCCEEEESCG-GGGTTCSEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHH-Hhhhccc------cccCCccceeccCH-HHhccccEE
Confidence            799999999999999998876554  8999998654321110 0000000      0000000  11233 457999999


Q ss_pred             EEeecCCc-------cccC-CC--C-------HHHHccCCCCcEEEEcCC
Q 019081          230 VCCLSLNK-------QTAG-IV--N-------KSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       230 ~~~lPlt~-------~T~~-li--~-------~~~l~~mk~gailIN~sR  262 (346)
                      +++.....       .++. ++  |       .+.+....|++++|+++-
T Consensus        74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence            99865321       1221 11  1       123455678999999954

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.43  E-value=0.00081  Score=54.68  Aligned_cols=34  Identities=38%  Similarity=0.537  Sum_probs=31.0

Q ss_pred             CeEEEE-ecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVFIL-GFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIi-G~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .||+|| |.|.||+++|++|...|++|++++|+..
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            379999 8999999999999999999999998754

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.42  E-value=0.00084  Score=55.58  Aligned_cols=109  Identities=14%  Similarity=0.203  Sum_probs=61.2

Q ss_pred             eEEEEecCHHHHHHHHHHccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhh--cCCEE
Q 019081          155 TVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS--KADVV  229 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~--~aDiV  229 (346)
                      ++||||+|.+|+..++.++.. +++|++ +|++..+...       +..+.+     ..... ...+++++++  +.|+|
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~-------~~~~~~-----~~~~~~~~~~~~~ll~~~~iD~v   70 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKA-------FATANN-----YPESTKIHGSYESLLEDPEIDAL   70 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHH-------HHHHTT-----CCTTCEEESSHHHHHHCTTCCEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCcccccc-------chhccc-----cccceeecCcHHHhhhcccccee
Confidence            799999999999999988765 778775 5765432100       000000     00000 2468999984  57899


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCC---HHHHHHHHHhCCCe
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD---YEAIAHYLECGHLG  281 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd---~~aL~~aL~~g~i~  281 (346)
                      ++++|.....     .-....++.|.-++-- -.-..+   .+.|.+..++..+.
T Consensus        71 ~I~tp~~~h~-----~~~~~~l~~g~~v~~E-KP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          71 YVPLPTSLHV-----EWAIKAAEKGKHILLE-KPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             EECCCGGGHH-----HHHHHHHTTTCEEEEC-SSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             eecccchhhc-----chhhhhhhccceeecc-cccccCHHHHHHHHHHHHhhCCE
Confidence            9998743221     1223335555333321 222223   35577777776654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.32  E-value=0.00083  Score=55.45  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=32.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.|++..+
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r   64 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC   64 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhh
Confidence            47799999999999999999999998 69999986543

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.29  E-value=0.0028  Score=49.95  Aligned_cols=100  Identities=19%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             ccCCCeEEEEec----------CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCH
Q 019081          150 TLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI  219 (346)
Q Consensus       150 ~l~g~tvgIiG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  219 (346)
                      .+.+++|||+|+          +.-...+++.|...|++|.+|||........... ..+ ..+. ....  ......++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~-~~~-~~~~-~~~~--~~~~~~~~   84 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGAN-KEY-IESK-IPHV--SSLLVSDL   84 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSC-HHH-HHHT-SHHH--HTTBCSCH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhh-hhh-hhhc-cccc--cceeehhh
Confidence            467889999998          4567889999999999999999843211000000 000 0000 0000  00123689


Q ss_pred             HHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEc
Q 019081          220 FEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       220 ~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      ++++..||+|+++++-..     + .+....++++.+++++
T Consensus        85 ~e~i~~~D~ivi~t~h~~-----f-~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          85 DEVVASSDVLVLGNGDEL-----F-VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HHHHHHCSEEEECSCCGG-----G-HHHHHSCCTTCEEEES
T ss_pred             hhhhhhceEEEEEeCCHH-----H-HHHHHHhcCCCEEEEC
Confidence            999999999999987432     1 3445567788899997

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.28  E-value=0.0024  Score=50.81  Aligned_cols=101  Identities=14%  Similarity=0.140  Sum_probs=57.7

Q ss_pred             eEEEEecCHHHHHHHHHHcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEEe
Q 019081          155 TVFILGFGNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC  232 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~  232 (346)
                      +|+|||.|.+|..+|..+..  +.-++..+|.+........ .+..+..      ..........+..+.++.||+|+++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~-~Dl~~~~------~~~~~~~~~~~~~~~~~~adivvit   74 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDA-LDLIHGT------PFTRRANIYAGDYADLKGSDVVIVA   74 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHH-HHHHHHG------GGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchh-ccccccc------cccccccccCCcHHHhcCCCEEEEe
Confidence            79999999999999987764  4458999998653321110 0000000      0000000112234558899999998


Q ss_pred             ecCCccccCCCCH--------------HHHccCCCCcEEEEcCCC
Q 019081          233 LSLNKQTAGIVNK--------------SFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       233 lPlt~~T~~li~~--------------~~l~~mk~gailIN~sRg  263 (346)
                      .- .+...+.-..              +.+....|++++++++-.
T Consensus        75 ag-~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP  118 (140)
T d1a5za1          75 AG-VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP  118 (140)
T ss_dssp             CC-CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             cc-cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc
Confidence            54 2333333211              234555789999998643

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.26  E-value=0.0026  Score=52.80  Aligned_cols=80  Identities=18%  Similarity=0.279  Sum_probs=45.0

Q ss_pred             eEEEEecCHHHHHHHHHHccC-CCEEEEEcCCCccccccccc--cchhhhccccccccccccC--CcCCHHHHhhcCCEE
Q 019081          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQ--SSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  229 (346)
                      +|||.|+|+|||.+++.+... +++|++++............  ........+.. ..+....  ...++.++++++|+|
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSI-KKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGH-HHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccc-eeccccceecCCchhhhhhcCCEE
Confidence            799999999999999988753 68888875432211000000  00000000000 0011111  234678888899999


Q ss_pred             EEeecC
Q 019081          230 VCCLSL  235 (346)
Q Consensus       230 ~~~lPl  235 (346)
                      +-|.|.
T Consensus        82 iecTG~   87 (178)
T d1b7go1          82 VDTTPN   87 (178)
T ss_dssp             EECCST
T ss_pred             EECCCC
Confidence            999885

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.24  E-value=0.0023  Score=50.98  Aligned_cols=101  Identities=14%  Similarity=0.144  Sum_probs=55.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--C-cCCHHHHhhcCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--C-HEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~ell~~aDiV  229 (346)
                      ++|+|||.|.+|..+|-.+...+. +++.+|........... +..+.      ........  . ..+.+ .+++||+|
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~-Dl~~~------~~~~~~~~~i~~~~d~~-~~~~advv   73 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKAL-DLYEA------SPIEGFDVRVTGTNNYA-DTANSDVI   73 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHH-HHHTT------HHHHTCCCCEEEESCGG-GGTTCSEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHH-Hhhcc------ccccCCCCEEEecCcHH-HhcCCCEE
Confidence            699999999999999988775554 89999986543211110 00000      00000000  1 13444 46889999


Q ss_pred             EEeecC--Ccc-cc-CCC--CH-------HHHccCCCCcEEEEcCC
Q 019081          230 VCCLSL--NKQ-TA-GIV--NK-------SFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       230 ~~~lPl--t~~-T~-~li--~~-------~~l~~mk~gailIN~sR  262 (346)
                      +++...  .+. ++ .++  |.       +.+.+..|.+++++++.
T Consensus        74 vitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          74 VVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             EECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             EEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence            998842  211 21 121  11       13444567899999754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.16  E-value=0.0037  Score=50.28  Aligned_cols=104  Identities=12%  Similarity=0.182  Sum_probs=58.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEE
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  229 (346)
                      ..+|+|||.|.+|..+|..+...+. ++..||++............ +.      ........  ...+..+.+++||+|
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~-~~------~~~~~~~~~v~~~~~~~~~~~advv   75 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTS-HT------NVMAYSNCKVSGSNTYDDLAGADVV   75 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHH-TH------HHHHTCCCCEEEECCGGGGTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchh-hh------ccccCCCcEEEecccccccCCCcEE
Confidence            4689999999999999987765444 79999986643211110000 00      00000000  112344667899999


Q ss_pred             EEeecCCcc---c-----cC-CC--CHH-------HHccCCCCcEEEEcCCC
Q 019081          230 VCCLSLNKQ---T-----AG-IV--NKS-------FLSSMKKGSLLVNIARG  263 (346)
Q Consensus       230 ~~~lPlt~~---T-----~~-li--~~~-------~l~~mk~gailIN~sRg  263 (346)
                      +++.-....   +     +- ++  |..       .++...|++++++++..
T Consensus        76 vitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          76 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             EEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            998753211   1     11 11  111       24444689999998654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.14  E-value=0.0021  Score=52.50  Aligned_cols=107  Identities=9%  Similarity=0.174  Sum_probs=61.5

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhcccccccccccc--CCcCCHHHHhh
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEFAS  224 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ell~  224 (346)
                      ..+..++|+|||.|++|..+|..+...|.  ++..||.+.......... ..+.      .......  ....+ .+.++
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alD-l~h~------~~~~~~~~~~~~~d-~~~~~   87 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD-LQHG------SLFLQTPKIVADKD-YSVTA   87 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHH-HHHT------GGGCCCSEEEECSS-GGGGT
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHH-Hhcc------ccccCCCeEEeccc-hhhcc
Confidence            44667899999999999999999987776  899999864332111100 0000      0000000  01123 35578


Q ss_pred             cCCEEEEeecCC--c-cccC-CC--C-------HHHHccCCCCcEEEEcCCC
Q 019081          225 KADVVVCCLSLN--K-QTAG-IV--N-------KSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       225 ~aDiV~~~lPlt--~-~T~~-li--~-------~~~l~~mk~gailIN~sRg  263 (346)
                      +||+|++..-..  + +|+- ++  |       ...+....+++++|+++..
T Consensus        88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            999999976432  1 2221 11  1       1123444678999998643

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.00  E-value=0.0025  Score=52.53  Aligned_cols=31  Identities=29%  Similarity=0.559  Sum_probs=25.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccC-CCEEEEEcC
Q 019081          154 KTVFILGFGNIGVELAKRLRPF-GVKIIATKR  184 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~-G~~V~~~d~  184 (346)
                      ++|||-|||+|||.+.+.+... .++|++++.
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd   33 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSK   33 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEec
Confidence            5899999999999999987644 478777653

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.00  E-value=0.0022  Score=52.92  Aligned_cols=66  Identities=20%  Similarity=0.239  Sum_probs=42.9

Q ss_pred             CeEEEEecCHHHHH-HHHHHccCC--CEEE-EEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh--
Q 019081          154 KTVFILGFGNIGVE-LAKRLRPFG--VKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--  224 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~~l~~~G--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--  224 (346)
                      -++||||+|.+|+. .+..++.++  ++|. ++|++.....                 .+...++   .+.+++++++  
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~~ell~~~   66 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAE-----------------EFAKMVGNPAVFDSYEELLESG   66 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHH-----------------HHHHHHSSCEEESCHHHHHHSS
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhh-----------------hhhccccccceeeeeecccccc
Confidence            37999999999987 467776543  5766 4676543311                 1111111   2468999986  


Q ss_pred             cCCEEEEeecCC
Q 019081          225 KADVVVCCLSLN  236 (346)
Q Consensus       225 ~aDiV~~~lPlt  236 (346)
                      +.|+|++++|..
T Consensus        67 ~id~v~I~tp~~   78 (181)
T d1zh8a1          67 LVDAVDLTLPVE   78 (181)
T ss_dssp             CCSEEEECCCGG
T ss_pred             ccceeecccccc
Confidence            478899998843

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.91  E-value=0.02  Score=45.76  Aligned_cols=99  Identities=20%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             cCCCeEEEEec---CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          151 LLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       151 l~g~tvgIiG~---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      |.|++|++||=   |++.++++..+..||++++.+-+.....+... .          ....-.......++++.++++|
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~-~----------~~~~~~~~~~~~d~~eai~~aD   69 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKE-I----------LDELNYPVKEVENPFEVINEVD   69 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHH-H----------HTTCCSCEEEESCGGGTGGGCS
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchh-h----------cccCCCeEEEEeCHHHHhhcCC
Confidence            57999999996   56999999999999999765543221110000 0          0000000012368899999999


Q ss_pred             EEEEeecCCc-----------cccCCCCHHHHccCCCCcEEEEc
Q 019081          228 VVVCCLSLNK-----------QTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       228 iV~~~lPlt~-----------~T~~li~~~~l~~mk~gailIN~  260 (346)
                      +|..---...           .....++.+.++.+|++++|.-+
T Consensus        70 vvy~~~~q~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~  113 (153)
T d1pg5a2          70 VLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHP  113 (153)
T ss_dssp             EEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECC
T ss_pred             eEEEeeeeehhccchhHHHHHHHhhhhhHHHHhccCCCeEEecC
Confidence            9875321111           12234677778888888877666

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.76  E-value=0.0046  Score=50.90  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=24.6

Q ss_pred             CeEEEEecCHHHHHHHHHHcc-CCCEEEEEc
Q 019081          154 KTVFILGFGNIGVELAKRLRP-FGVKIIATK  183 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~-~G~~V~~~d  183 (346)
                      .+|||.|+|+|||.+++.+.. -.++|++++
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaIN   33 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGIT   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            489999999999999998864 457877665

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.74  E-value=0.0049  Score=49.02  Aligned_cols=103  Identities=12%  Similarity=0.122  Sum_probs=54.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      ++|+|||.|.+|..+|-.+...|.  ++..||++.......... ..+..      ...........-.+.+++||+|++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D-l~~~~------~~~~~~~~~~~~~~~~~~adivvi   74 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD-INHGL------PFMGQMSLYAGDYSDVKDCDVIVV   74 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH-HTTSC------CCTTCEEEC--CGGGGTTCSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee-eccCc------ccCCCeeEeeCcHHHhCCCceEEE
Confidence            589999999999999988765554  899999876432111100 00000      000000001222355789999999


Q ss_pred             eecCCc---cccC-CC--C-------HHHHccCCCCcEEEEcCCC
Q 019081          232 CLSLNK---QTAG-IV--N-------KSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       232 ~lPlt~---~T~~-li--~-------~~~l~~mk~gailIN~sRg  263 (346)
                      +.-...   +++- ++  |       .+.+....|.+++|+++..
T Consensus        75 tag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  119 (142)
T d1y6ja1          75 TAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP  119 (142)
T ss_dssp             CCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred             ecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence            843221   1110 11  1       1224445688999998653

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.70  E-value=0.0034  Score=53.58  Aligned_cols=74  Identities=16%  Similarity=0.118  Sum_probs=44.0

Q ss_pred             CCCeEEEEecCHHHHH-HHHHHccC-CCEEE-EEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cC
Q 019081          152 LGKTVFILGFGNIGVE-LAKRLRPF-GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KA  226 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~a  226 (346)
                      +--+|||||+|.+|+. ++..++.. +++|+ ++|++..+......       +.++ .  ......+.++++++.  +.
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~-------~~~i-~--~~~~~~~~d~~ell~~~~i  101 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAA-------EYGV-D--PRKIYDYSNFDKIAKDPKI  101 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHH-------HTTC-C--GGGEECSSSGGGGGGCTTC
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHH-------hhcc-c--cccccccCchhhhcccccc
Confidence            3458999999999974 56666654 78877 56876543211000       0000 0  000012467888885  57


Q ss_pred             CEEEEeecC
Q 019081          227 DVVVCCLSL  235 (346)
Q Consensus       227 DiV~~~lPl  235 (346)
                      |+|++++|.
T Consensus       102 D~V~I~tp~  110 (221)
T d1h6da1         102 DAVYIILPN  110 (221)
T ss_dssp             CEEEECSCG
T ss_pred             eeeeeccch
Confidence            899998874

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.62  E-value=0.036  Score=44.63  Aligned_cols=104  Identities=16%  Similarity=0.188  Sum_probs=65.1

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhc
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK  225 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~  225 (346)
                      +|.|++|++||=| ++.++++..+..||+++....+..-..+.....+..        ........   ...++++.++.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~d~~ea~~~   72 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAE--------QNAAESGGSFELLHDPVKAVKD   72 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHH--------HHHHHHTCEEEEESCHHHHTTT
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHH--------HhhhcccceEEEecCHHHHhhh
Confidence            4789999999975 466888899999999999887642211100000000        00000001   23689999999


Q ss_pred             CCEEEEeecCCc----c--------ccCCCCHHHHccCCCCcEEEEcC
Q 019081          226 ADVVVCCLSLNK----Q--------TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       226 aDiV~~~lPlt~----~--------T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +|+|..-.=...    +        ....++.+.++++|++++|.-+.
T Consensus        73 adviy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          73 ADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             ccEEeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            999986431111    1        12467888899999999887663

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.61  E-value=0.0099  Score=47.32  Aligned_cols=103  Identities=16%  Similarity=0.158  Sum_probs=61.0

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccc--cCCcCCHHHHhhcCCE
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKADV  228 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aDi  228 (346)
                      .+|+|||. |.+|..+|..+...|.  ++..+|.+.... ...+      ..+.  ......  .....+..+.++.||+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~-~a~D------l~~~--~~~~~~~~~~~~~~~~~~~~~aDi   71 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VAAD------LSHI--ETRATVKGYLGPEQLPDCLKGCDV   71 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HHHH------HTTS--SSSCEEEEEESGGGHHHHHTTCSE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch-hhHH------Hhhh--hhhcCCCeEEcCCChHHHhCCCCE
Confidence            48999995 9999999999987766  689999754321 0000      0000  000000  0123567788999999


Q ss_pred             EEEeecCCccccCC-----C--CH-------HHHccCCCCcEEEEcCCCCCCCH
Q 019081          229 VVCCLSLNKQTAGI-----V--NK-------SFLSSMKKGSLLVNIARGGLLDY  268 (346)
Q Consensus       229 V~~~lPlt~~T~~l-----i--~~-------~~l~~mk~gailIN~sRg~~vd~  268 (346)
                      |++..-. +...++     +  |.       +.+....|.++++.++.  .+|.
T Consensus        72 vVitag~-~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~  122 (144)
T d1mlda1          72 VVIPAGV-PRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNS  122 (144)
T ss_dssp             EEECCSC-CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHH
T ss_pred             EEECCCc-CCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhh
Confidence            9987542 333333     1  11       22344478899999954  4553

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.58  E-value=0.0072  Score=48.03  Aligned_cols=100  Identities=14%  Similarity=0.079  Sum_probs=58.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhhcCCE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKADV  228 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aDi  228 (346)
                      .+|+|||.|.+|..+|-.+...|.  ++..+|.+........ .+..+.      ........   ...+. +.+++||+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~a-lDl~~~------~~~~~~~~~i~~~~d~-~~~~~adi   72 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEA-MDLAHA------AAGIDKYPKIVGGADY-SLLKGSEI   72 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHH-HHHHHH------HHTTTCCCEEEEESCG-GGGTTCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHH-HHHhhh------ccccCCCCccccCCCH-HHhccccE
Confidence            379999999999999998875554  7999997653311100 000000      00001100   11343 67899999


Q ss_pred             EEEeecCCccccCCC-------C-------HHHHccCCCCcEEEEcCC
Q 019081          229 VVCCLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       229 V~~~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~sR  262 (346)
                      |++.... +.+.+.-       |       .+.+.+..|.+++++++-
T Consensus        73 Vvitag~-~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          73 IVVTAGL-ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             EEECCCC-CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             EEEeccc-cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            9987642 2333321       1       123555678899999976

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.0056  Score=48.74  Aligned_cols=38  Identities=24%  Similarity=0.460  Sum_probs=34.9

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      ..+|.||++.|||.|.+|.+-|+.|...|++|+++++.
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45799999999999999999999999999999999754

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.53  E-value=0.0049  Score=49.95  Aligned_cols=90  Identities=24%  Similarity=0.289  Sum_probs=53.8

Q ss_pred             CeEEEEecCHHHHH-HHHHHccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccC---CcCCHHHHh----
Q 019081          154 KTVFILGFGNIGVE-LAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFA----  223 (346)
Q Consensus       154 ~tvgIiG~G~IG~~-vA~~l~~~-G~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell----  223 (346)
                      -++||||.|.||+. +.+.++.+ ..++.+ .+++......                ...++.+   ...++++++    
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~----------------~~a~~~~i~~~~~~~d~l~~~~~   68 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGL----------------ARAQRMGVTTTYAGVEGLIKLPE   68 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHH----------------HHHHHTTCCEESSHHHHHHHSGG
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccch----------------hhhhhcCCcccccceeeeeeccc
Confidence            37999999999986 56777755 446655 4665432110                0111111   123344443    


Q ss_pred             -hcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          224 -SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       224 -~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                       .+.|+|++++|....   .-.+..++..+.|.++|+-+-
T Consensus        69 ~~~iDiVf~ATpag~h---~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          69 FADIDFVFDATSASAH---VQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             GGGEEEEEECSCHHHH---HHHHHHHHHHCTTCEEEECST
T ss_pred             ccccCEEEEcCCchhH---HHhHHHHHHHHcCCEEEEccc
Confidence             367999999874322   222345666799999999875

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.52  E-value=0.0066  Score=46.75  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=31.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +++.|||.|.||-.+|..+..+|++|..+++...
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            6899999999999999999999999999987653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.51  E-value=0.0076  Score=46.12  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=31.4

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      -++|.|||.|.||-++|..++.+|.+|..+++..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            3789999999999999999999999999998754

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.49  E-value=0.0081  Score=46.02  Aligned_cols=100  Identities=17%  Similarity=0.296  Sum_probs=68.2

Q ss_pred             CeEEEEec----CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      |+++|||.    |..|..+.+.|+..|++|+.++++...-                  ....   .+.++.++=..-|++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i------------------~G~~---~y~sl~~lp~~~D~v   60 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------------------EGLK---CYRSVRELPKDVDVI   60 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------------------TTEE---CBSSGGGSCTTCCEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc------------------cCcc---ccccchhccccceEE
Confidence            68999994    6889999999999999999998754321                  0111   346788877788999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCe
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG  281 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~  281 (346)
                      ++++|. +.+..++.+ .. .+...++++..   +. ..+++.+.+++..|.
T Consensus        61 vi~vp~-~~~~~~l~~-~~-~~g~k~v~~~~---g~-~~~~~~~~a~~~gi~  105 (116)
T d1y81a1          61 VFVVPP-KVGLQVAKE-AV-EAGFKKLWFQP---GA-ESEEIRRFLEKAGVE  105 (116)
T ss_dssp             EECSCH-HHHHHHHHH-HH-HTTCCEEEECT---TS-CCHHHHHHHHHHTCE
T ss_pred             EEEeCH-HHHHHHHHH-HH-hcCCceEEecc---ch-hhHHHHHHHHHcCCE
Confidence            999984 445555543 22 34445666653   33 345677777776664

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.48  E-value=0.0024  Score=52.26  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=30.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEE-EEEcCCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKI-IATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V-~~~d~~~~  187 (346)
                      .|.+|.|+|.|.||...++.++.+|+++ ++.|++..
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~   64 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVES   64 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHH
Confidence            5889999999999999999999999965 55666543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.47  E-value=0.0069  Score=46.05  Aligned_cols=34  Identities=29%  Similarity=0.524  Sum_probs=31.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +++.|||.|.||-.+|..+..+|.+|+.+.+...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            7899999999999999999999999999987653

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=95.47  E-value=0.0098  Score=46.82  Aligned_cols=102  Identities=12%  Similarity=0.210  Sum_probs=68.5

Q ss_pred             CCCeEEEEec----CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          152 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       152 ~g~tvgIiG~----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      .-|+++|||.    ++.|..+.+.|+..|+++..+.++....                  + ......+.++.++-..-|
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~------------------~-i~g~~~~~~l~~i~~~iD   72 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE------------------E-LFGEEAVASLLDLKEPVD   72 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS------------------E-ETTEECBSSGGGCCSCCS
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc------------------e-eeceecccchhhccCCCc
Confidence            4579999997    7899999999999999999998754321                  0 001113467778777889


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                      ++++++| .+.+..++.+-.  .+...++++..+   ..+++....|.+.|
T Consensus        73 ~v~v~~p-~~~v~~~v~~~~--~~g~k~i~~q~G---~~~~e~~~~a~~~G  117 (136)
T d1iuka_          73 ILDVFRP-PSALMDHLPEVL--ALRPGLVWLQSG---IRHPEFEKALKEAG  117 (136)
T ss_dssp             EEEECSC-HHHHTTTHHHHH--HHCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred             eEEEecc-HHHHHHHHHHHH--hhCCCeEEEecC---ccCHHHHHHHHHcC
Confidence            9999998 455666665432  345567777553   34555544444444

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.41  E-value=0.24  Score=41.81  Aligned_cols=183  Identities=14%  Similarity=0.129  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcccccc-c
Q 019081          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQV-S  193 (346)
Q Consensus       116 vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~-~  193 (346)
                      +|--+++-+|+.+|-.                +..|.+.++.|+|.|.-|-.+|+.+...|. +++.+|+..--.... .
T Consensus         5 TaaV~LAgll~a~~~~----------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~   68 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT----------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPE   68 (222)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGG
T ss_pred             HHHHHHHHHHHHHHHh----------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCccc
Confidence            4556677777777653                567999999999999999999999988787 588899863211000 0


Q ss_pred             cccchhhhccccccccccccCCcCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHH
Q 019081          194 CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH  273 (346)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~  273 (346)
                      .....+..+.   ...........++.+++..++++...-     +.+++.++.+..|.+..++.=.|...---|.+  .
T Consensus        69 ~~~~~~~~~~---~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--~  138 (222)
T d1vl6a1          69 TCLNEYHLEI---ARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--L  138 (222)
T ss_dssp             GCSSHHHHHH---HHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--H
T ss_pred             ccccHHHHHH---HhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--h
Confidence            0000000000   000000112468889999999876642     67899999999999999999999877655544  3


Q ss_pred             HHHhCCCeEEEEecCCCCCCCCCCCCCCCCceEEccCCCCC-----cHHHHHHHHHHHHHHHHHHH
Q 019081          274 YLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGV-----TEHSYRSMAKVVGDVALQLH  334 (346)
Q Consensus       274 aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nviiTPH~a~~-----t~~~~~~~~~~~~~ni~~~~  334 (346)
                      +-..|+.--|.     .-|.+|    =..-|+++-|=++-.     +. ..+.|...+++.+-.+.
T Consensus       139 a~~~G~ai~At-----Gsp~~p----~Q~NN~yiFPGiglGal~~~ar-itd~m~~aAA~alA~~~  194 (222)
T d1vl6a1         139 AREAGAFIVAT-----GRSDHP----NQVNNLLAFPGIMKGAVEKRSK-ITKNMLLSAVEAIARSC  194 (222)
T ss_dssp             HHHTTCSEEEE-----SCTTSS----SBCCGGGTHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHTS
T ss_pred             heeccceEEec-----CCCCCC----ccCcceeecchHHHHHHHhccc-cchHHHHHHHHHHHhcC
Confidence            45567654332     223322    245677777754311     11 22455556666665543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.40  E-value=0.0031  Score=51.56  Aligned_cols=37  Identities=19%  Similarity=0.402  Sum_probs=32.6

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .|++|.|.|. |.+|....+.++.+|++|++.+++..+
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~   64 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEK   64 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccc
Confidence            5789999995 999999999999999999999876543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.37  E-value=0.0048  Score=49.21  Aligned_cols=99  Identities=17%  Similarity=0.190  Sum_probs=56.4

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC--CEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV  229 (346)
                      .+|+|||.|++|..+|-.+...|  -++..+|.+........ .+..+.      ........  ...+. +.+++||+|
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a-~Dl~~a------~~~~~~~~i~~~~~~-~~~~daDvV   73 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEV-LDMQHG------SSFYPTVSIDGSDDP-EICRDADMV   73 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHH-HHHHHT------GGGSTTCEEEEESCG-GGGTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHH-HHHHhc------cccCCCceeecCCCH-HHhhCCcEE
Confidence            48999999999999998776544  48999998653321100 000000      00000000  12344 458899999


Q ss_pred             EEeecCCccccCCC-------C-------HHHHccCCCCcEEEEcC
Q 019081          230 VCCLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       230 ~~~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~s  261 (346)
                      +++.-. +...+.-       |       ...+....|++++|+++
T Consensus        74 VitaG~-~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          74 VITAGP-RQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             EECCCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             EEeccc-ccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            997642 2222222       1       12344456888999886

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.30  E-value=0.0083  Score=50.89  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=31.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ||+|.|||.|.-|-..|..|+..|++|++++++.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6899999999999999999999999999999754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.23  E-value=0.014  Score=48.18  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=35.9

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      -.....|+|.|||.|..|-..|..|+..|++|+.|++...
T Consensus        38 ~~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          38 LPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             CSCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            4556789999999999999999999999999999998653

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.01  Score=45.11  Aligned_cols=34  Identities=32%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +++.|||.|.+|-++|..++.+|.+|..+++...
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            6899999999999999999999999999988653

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.062  Score=43.33  Aligned_cols=103  Identities=18%  Similarity=0.168  Sum_probs=65.3

Q ss_pred             ccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHhh
Q 019081          150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS  224 (346)
Q Consensus       150 ~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~  224 (346)
                      +|.|+||++||=|+ +-.+++..+..||+++....+..-........   ..      .......+    ...++++.+.
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~---~~------~~~~~~~~~~i~~~~d~~~~~~   71 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTK---LA------EQYAKENGTKLLLTNDPLEAAH   71 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHH---HH------HHHHHHHTCCEEEESCHHHHHT
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHH---HH------HHHHhccCCEEEEEcCHHHHHh
Confidence            47899999999753 55666777788999999887643221100000   00      00000111    2468999999


Q ss_pred             cCCEEEEeecCCcc------------ccCCCCHHHHccCCCCcEEEEcC
Q 019081          225 KADVVVCCLSLNKQ------------TAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       225 ~aDiV~~~lPlt~~------------T~~li~~~~l~~mk~gailIN~s  261 (346)
                      .+|+|..-......            ....++.+.++.+|++++|.-+.
T Consensus        72 ~advi~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          72 GGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             TCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             hhhheeeeceecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            99999886643322            23456788888899999888773

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.06  E-value=0.0075  Score=49.12  Aligned_cols=36  Identities=19%  Similarity=0.247  Sum_probs=32.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~~~  187 (346)
                      .+|+|.|||.|.+|-..|..|+.+|++ |++++++..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            578999999999999999999999995 999998653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.012  Score=45.41  Aligned_cols=34  Identities=32%  Similarity=0.333  Sum_probs=31.5

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      |++.|||.|.||-.+|..++.+|.+|+.+.+...
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            6899999999999999999999999999998643

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.02  E-value=0.0072  Score=48.62  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=33.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .|.+|.|+|.|.||...++.++.+|++|+++|++..+
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~   63 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAK   63 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhH
Confidence            4779999999999999999999999999999987543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.92  E-value=0.013  Score=44.79  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +++.|||.|.||-.+|..++.+|++|..+.+..
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            789999999999999999999999999988754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.88  E-value=0.0094  Score=45.88  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=29.7

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      +++.|||.|.||-++|..++.+|.+|..+.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            58999999999999999999999999998764

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.87  E-value=0.008  Score=46.29  Aligned_cols=34  Identities=21%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +++.|||.|.||-.+|..++.+|++|..+.+...
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            6899999999999999999999999999987654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.86  E-value=0.015  Score=44.19  Aligned_cols=36  Identities=22%  Similarity=0.232  Sum_probs=32.9

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ..++++.|||.|.||-.+|..++.+|.+|..+.+..
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            357899999999999999999999999999998764

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.75  E-value=0.013  Score=47.54  Aligned_cols=101  Identities=16%  Similarity=0.157  Sum_probs=53.1

Q ss_pred             eEEEEecCHHHHHHHHHHccCC----CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhh--cCCE
Q 019081          155 TVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV  228 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  228 (346)
                      +|||||+|.+|+..++.++...    ..+...+......                  .. . .....++++++.  +.|+
T Consensus         9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~------------------~~-~-~~~~~~~~e~l~~~~iD~   68 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG------------------SL-D-EVRQISLEDALRSQEIDV   68 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC------------------EE-T-TEEBCCHHHHHHCSSEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHHH------------------Hh-h-ccCcCCHHHHHhCCCcch
Confidence            7999999999999988887643    3333332211100                  00 0 002347889986  4588


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcC-CCCCCCHHHHHHHHHhCC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA-RGGLLDYEAIAHYLECGH  279 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~s-Rg~~vd~~aL~~aL~~g~  279 (346)
                      |++++|..  ++.-+-...++.=|  .+++.-= --.+-+.+.|+++.++..
T Consensus        69 V~I~tp~~--~H~~~~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~  116 (172)
T d1lc0a1          69 AYICSESS--SHEDYIRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKG  116 (172)
T ss_dssp             EEECSCGG--GHHHHHHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTT
T ss_pred             hhhccccc--ccccccccccccch--hhhcCCCccccHHHHHHHHHHHHHcC
Confidence            99988743  32222233333211  3555431 112334456666544443

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.71  E-value=0.005  Score=50.04  Aligned_cols=70  Identities=11%  Similarity=0.012  Sum_probs=41.4

Q ss_pred             eEEEEecCHHHHHHHHH-----HccC-CCEEEEEcCCCccccccccccchhhhcccccccccccc---CCcCCHHHHhhc
Q 019081          155 TVFILGFGNIGVELAKR-----LRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---GCHEDIFEFASK  225 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~-----l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~  225 (346)
                      +|.|||.|.+|...+-.     ...+ +-++..+|.+..+.....+.  .        .......   ....+.++.++.
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~--~--------~~~~~~~~~~~~t~~~~~~l~~   71 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDF--V--------KRLVKDRFKVLISDTFEGAVVD   71 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHH--H--------HHHHTTSSEEEECSSHHHHHTT
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHH--H--------HhhhccCceEEEecCcccccCC
Confidence            79999999888666532     2223 35899999865432111000  0        0000000   123578899999


Q ss_pred             CCEEEEeec
Q 019081          226 ADVVVCCLS  234 (346)
Q Consensus       226 aDiV~~~lP  234 (346)
                      ||+|++..-
T Consensus        72 aDvVVita~   80 (162)
T d1up7a1          72 AKYVIFQFR   80 (162)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEecc
Confidence            999999764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.64  E-value=0.018  Score=44.18  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=32.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .++++.|||.|.+|-.+|..++.+|.+|+.+++..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            46899999999999999999999999999998754

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=94.62  E-value=0.039  Score=45.98  Aligned_cols=102  Identities=19%  Similarity=0.293  Sum_probs=67.7

Q ss_pred             HHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-C-cCCHHHHhhcCCEEEEe-ecCCccccCCC
Q 019081          167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C-HEDIFEFASKADVVVCC-LSLNKQTAGIV  243 (346)
Q Consensus       167 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~ell~~aDiV~~~-lPlt~~T~~li  243 (346)
                      ..+++|..+|++|++=.--...        .+|      .++.....+ . ..+-++++.++|+|+.. .|...+    .
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~--------a~f------sD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~   82 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVG--------ASI------TDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----E   82 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGG--------GTC------CHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----G
T ss_pred             HHHHHHHHCCCEEEEEcCcccc--------cCC------CHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----c
Confidence            4678888899999973211111        001      112222223 1 25678999999988754 454332    2


Q ss_pred             CHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecC
Q 019081          244 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA  288 (346)
Q Consensus       244 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~  288 (346)
                      +.+.++.||+|+++|..-  ......+++++|.+.++...++|..
T Consensus        83 ~~~ei~~lk~g~~li~~l--~p~~~~~~~~~l~~~~it~~a~e~i  125 (194)
T d1l7da2          83 GTDEVALIKEGAVLMCHL--GALTNRPVVEALTKRKITAYAMELM  125 (194)
T ss_dssp             SCCGGGGSCTTCEEEEEC--CGGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred             chhHhhhccCceEEEEec--ccccchhHHHHHHhcCceEEeeecc
Confidence            345788899999999874  3566789999999999998888875

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.58  E-value=0.049  Score=43.34  Aligned_cols=72  Identities=17%  Similarity=0.157  Sum_probs=49.5

Q ss_pred             cCCCeEEEEec---CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC---CcCCHHHHhh
Q 019081          151 LLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS  224 (346)
Q Consensus       151 l~g~tvgIiG~---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~  224 (346)
                      |.|++|+|||=   +++.++++..+..||+++..+.|..-.......            ........   ...++++.++
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~------------~~~~~~~~~~~~~~d~~~av~   69 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIV------------EELREKGMKVVETTTLEDVIG   69 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHH------------HHHHHTTCCEEEESCTHHHHT
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHH------------HHHHhhcccceeecCHHHhhc
Confidence            68999999998   689999999999999999988764322111000            00000111   2468999999


Q ss_pred             cCCEEEEeec
Q 019081          225 KADVVVCCLS  234 (346)
Q Consensus       225 ~aDiV~~~lP  234 (346)
                      .+|+|....-
T Consensus        70 ~aDvvy~~~~   79 (157)
T d1ml4a2          70 KLDVLYVTRI   79 (157)
T ss_dssp             TCSEEEECCC
T ss_pred             cCcEEEeecc
Confidence            9999887543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.0094  Score=47.39  Aligned_cols=32  Identities=9%  Similarity=0.140  Sum_probs=29.3

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .+-|+|+|.+|+.+++.|...|.+|+++|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            47899999999999999999999999998765

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.53  E-value=0.0053  Score=49.91  Aligned_cols=93  Identities=14%  Similarity=0.068  Sum_probs=55.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhh----
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS----  224 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~----  224 (346)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|++..+......             ...+...  ...+.++.++    
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~-------------~ga~~~i~~~~~~~~~~~~~~~~   98 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER-------------LGADHVVDARRDPVKQVMELTRG   98 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH-------------TTCSEEEETTSCHHHHHHHHTTT
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh-------------cccceeecCcccHHHHHHHhhCC
Confidence            47899999999999999999999887 67778876533111000             0011110  1122333332    


Q ss_pred             -cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          225 -KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       225 -~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                       ..|+|+.++... .+    -...+..++++..++.++-
T Consensus        99 ~g~d~vid~~g~~-~~----~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2          99 RGVNVAMDFVGSQ-AT----VDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             CCEEEEEESSCCH-HH----HHHGGGGEEEEEEEEECCC
T ss_pred             CCceEEEEecCcc-hH----HHHHHHHHhCCCEEEEEeC
Confidence             257777766532 21    1345667788888887754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.50  E-value=0.015  Score=44.95  Aligned_cols=33  Identities=21%  Similarity=0.349  Sum_probs=31.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +++.|||.|.||-++|..++.+|.+|..+++..
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            689999999999999999999999999998764

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.48  E-value=0.021  Score=43.80  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++++.|||.|.+|-++|..++..|.+|..+++...
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            57999999999999999999999999999987653

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.47  E-value=0.007  Score=49.35  Aligned_cols=94  Identities=19%  Similarity=0.252  Sum_probs=56.2

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh------h
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA------S  224 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  224 (346)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++..+... ..       ..+ .+.....  ...++.+.+      .
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~-l~-------~~G-a~~vi~~--~~~~~~~~v~~~t~~~   93 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM-LS-------RLG-VEYVGDS--RSVDFADEILELTDGY   93 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH-HH-------TTC-CSEEEET--TCSTHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccc-cc-------ccc-ccccccC--CccCHHHHHHHHhCCC
Confidence            4789999885 999999999999999999998765432100 00       000 0011110  122343322      2


Q ss_pred             cCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          225 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       225 ~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      ..|+|+.++..  +    .-...++.++++..+|+++.
T Consensus        94 g~d~v~d~~g~--~----~~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_          94 GVDVVLNSLAG--E----AIQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             CEEEEEECCCT--H----HHHHHHHTEEEEEEEEECSC
T ss_pred             CEEEEEecccc--h----HHHHHHHHhcCCCEEEEEcc
Confidence            36777776642  1    12456677888888888753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.38  E-value=0.01  Score=43.93  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=31.7

Q ss_pred             CCCeEEEEecCHHH-HHHHHHHccCCCEEEEEcCCCc
Q 019081          152 LGKTVFILGFGNIG-VELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG-~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..+++=+||.|.+| .++|+.|+..|++|.++|....
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            56789999999999 6669999999999999998643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.36  E-value=0.017  Score=45.73  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=31.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCC--CEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G--~~V~~~d~~~  186 (346)
                      +||+|.|||.|.+|-.+|..|+.+|  .+|+.+++..
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5899999999999999999998877  5899998765

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.31  E-value=0.036  Score=41.62  Aligned_cols=62  Identities=18%  Similarity=0.164  Sum_probs=44.8

Q ss_pred             CCeEEEEec----------CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH
Q 019081          153 GKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF  222 (346)
Q Consensus       153 g~tvgIiG~----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  222 (346)
                      .|+|||+|+          ..-.-.+.+.|...|++|.+|||......                  .........+++++
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~------------------~~~~~~~~~~l~~~   76 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE------------------SEDQSVLVNDLENF   76 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC------------------TTCCSEECCCHHHH
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH------------------hccCCEEEeCHHHH
Confidence            468999998          45678899999999999999999764310                  00000023589999


Q ss_pred             hhcCCEEEEe
Q 019081          223 ASKADVVVCC  232 (346)
Q Consensus       223 l~~aDiV~~~  232 (346)
                      +..||+|++.
T Consensus        77 ~~~sDiII~~   86 (108)
T d1dlja3          77 KKQANIIVTN   86 (108)
T ss_dssp             HHHCSEEECS
T ss_pred             HhhCCEEEEc
Confidence            9999987754

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.30  E-value=0.01  Score=45.78  Aligned_cols=88  Identities=15%  Similarity=0.166  Sum_probs=49.0

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHH----hhcCCEE
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----ASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  229 (346)
                      |.+-|+|+|.+|+.+++.|++.+  |.+++..+........  .++        ..  -.+...+.+-|    +.+|+.+
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~--~~~--------~~--i~Gd~~~~~~L~~a~i~~A~~v   66 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLR--SGA--------NF--VHGDPTRVSDLEKANVRGARAV   66 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHH--TTC--------EE--EESCTTSHHHHHHTTCTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHh--cCc--------cc--cccccCCHHHHHHhhhhcCcEE
Confidence            46889999999999999998654  5666665443111000  000        00  11222333222    5779999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEE
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLL  257 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gail  257 (346)
                      ++..+...  ..+.-....+.+.|...+
T Consensus        67 i~~~~~d~--~n~~~~~~~r~~~~~~~i   92 (129)
T d2fy8a1          67 IVNLESDS--ETIHCILGIRKIDESVRI   92 (129)
T ss_dssp             EECCSSHH--HHHHHHHHHHHHCSSSCE
T ss_pred             EEeccchh--hhHHHHHHHHHHCCCceE
Confidence            99886433  333334445555555433

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.23  E-value=0.089  Score=41.98  Aligned_cols=109  Identities=18%  Similarity=0.222  Sum_probs=63.6

Q ss_pred             cCCCeEEEEec--CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccccc-C---CcCCHHHHhh
Q 019081          151 LLGKTVFILGF--GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G---CHEDIFEFAS  224 (346)
Q Consensus       151 l~g~tvgIiG~--G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~l~ell~  224 (346)
                      |.|++|++||=  .++-.+.+..+..||+++...-|..-.........         ......+. +   ...++++.++
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~d~~~ai~   71 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKR---------CQEIVKETDGSVSFTSNLEEALA   71 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHH---------HHHHHHHHCCEEEEESCHHHHHT
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHH---------HHHHHhhcCCceEEEecHHHhhh
Confidence            67999999993  58999999999999999998876321110000000         00000010 1   2368999999


Q ss_pred             cCCEEEEeecCCcc------------ccCCC-CHHHHccCCCCcEEEEcC---CCCCCCH
Q 019081          225 KADVVVCCLSLNKQ------------TAGIV-NKSFLSSMKKGSLLVNIA---RGGLLDY  268 (346)
Q Consensus       225 ~aDiV~~~lPlt~~------------T~~li-~~~~l~~mk~gailIN~s---Rg~~vd~  268 (346)
                      .+|+|..-.--...            ....+ +......+|++++|.-+.   ||.=|+.
T Consensus        72 ~aDviyt~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~  131 (161)
T d1vlva2          72 GADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTY  131 (161)
T ss_dssp             TCSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCH
T ss_pred             hhhheeccceeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccch
Confidence            99999875532111            11222 333344577888887764   4543433

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=94.21  E-value=0.033  Score=44.44  Aligned_cols=63  Identities=22%  Similarity=0.168  Sum_probs=46.1

Q ss_pred             CCCeEEEEec---CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          152 LGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       152 ~g~tvgIiG~---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      .|.+|++||=   +++.++++..+..||+++....|..-...                   ........++++.++.+|+
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~-------------------~~~~~~~~~~~ea~~~aDv   62 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE-------------------ENTFGTYVSMDEAVESSDV   62 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc-------------------ccceeEEEechhccccCce
Confidence            4889999996   68999999999999999988765321110                   0011124688899999999


Q ss_pred             EEEee
Q 019081          229 VVCCL  233 (346)
Q Consensus       229 V~~~l  233 (346)
                      |..--
T Consensus        63 iy~~r   67 (151)
T d2at2a2          63 VMLLR   67 (151)
T ss_pred             eeeeE
Confidence            87643

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.17  E-value=0.044  Score=46.93  Aligned_cols=37  Identities=30%  Similarity=0.504  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCC
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +|.||++.|.|.+ .||+++|+.|...|++|++.+|+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999975 699999999999999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.16  E-value=0.027  Score=43.01  Aligned_cols=34  Identities=32%  Similarity=0.409  Sum_probs=31.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ++++.|||.|.+|-++|..|+.+|.+|..+++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            3689999999999999999999999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.10  E-value=0.021  Score=43.08  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=31.3

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +++.|||.|.+|-.+|..++.+|.+|..+++...
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            7899999999999999999999999999987543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.021  Score=48.83  Aligned_cols=40  Identities=20%  Similarity=0.260  Sum_probs=35.7

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ++|.||++.|.|.+. ||+++|+.|...|++|++.+|+...
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            468999999999865 9999999999999999999987654

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.98  E-value=0.052  Score=43.06  Aligned_cols=107  Identities=19%  Similarity=0.200  Sum_probs=56.6

Q ss_pred             CeEEEEec-CHHHHHHHHHHcc---C-CCEEEEEcCCCccccccccccchhhhccccccccccccC--CcCCHHHHhhcC
Q 019081          154 KTVFILGF-GNIGVELAKRLRP---F-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKA  226 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~---~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~a  226 (346)
                      |+|||||. |.+|+.+.++|..   | -.++..+..+.........              ......  ...+. +.++.+
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~--------------~~~~~~~~~~~~~-~~~~~~   66 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSF--------------GGTTGTLQDAFDL-EALKAL   66 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGG--------------GTCCCBCEETTCH-HHHHTC
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccc--------------cCCceeeecccch-hhhhcC
Confidence            58999998 9999999986532   2 2356666543322111000              000000  11122 356899


Q ss_pred             CEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-----------CCHHHHHHHHHhC
Q 019081          227 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-----------LDYEAIAHYLECG  278 (346)
Q Consensus       227 DiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-----------vd~~aL~~aL~~g  278 (346)
                      |++++++|.... ..+  ...+..-..+.++|+.|.--=           |+.+.|-.++++|
T Consensus        67 DivF~a~~~~~s-~~~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g  126 (146)
T d1t4ba1          67 DIIVTCQGGDYT-NEI--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG  126 (146)
T ss_dssp             SEEEECSCHHHH-HHH--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred             cEEEEecCchHH-HHh--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence            999999985322 111  122222333456777763222           2445666677764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.96  E-value=0.041  Score=47.43  Aligned_cols=89  Identities=20%  Similarity=0.211  Sum_probs=52.3

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~~  231 (346)
                      +||.|+| .|.||+.+++.|...|++|+++.|+............ .......+ +... .......+.+.+..++.++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~-~~~~~~~v-~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGA-KLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTC-EEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHH-hhhccCCc-EEEEeecccchhhhhhccCcchhhh
Confidence            5799999 5999999999999999999999886543211100000 00000000 0000 00123456678889999998


Q ss_pred             eecCCccccCCCC
Q 019081          232 CLSLNKQTAGIVN  244 (346)
Q Consensus       232 ~lPlt~~T~~li~  244 (346)
                      +.+.........+
T Consensus        82 ~~~~~~~~~~~~~   94 (312)
T d1qyda_          82 ALAGGVLSHHILE   94 (312)
T ss_dssp             CCCCSSSSTTTTT
T ss_pred             hhhhcccccchhh
Confidence            8876544444443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.76  E-value=0.038  Score=48.35  Aligned_cols=40  Identities=23%  Similarity=0.414  Sum_probs=36.2

Q ss_pred             ccccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       148 ~~~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..+|.||++.|.| .|.||+++|+.|...|++|++.+|+..
T Consensus        20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            3589999999998 689999999999999999999998754

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.038  Score=43.77  Aligned_cols=101  Identities=21%  Similarity=0.200  Sum_probs=55.9

Q ss_pred             CeEEEEec-CHHHHHHHHHHc---cCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILGF-GNIGVELAKRLR---PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~---~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      .+|+|||. |.+|..+|-.++   .++-++..+|..... ......     ..+-.. ..........+..+.+++||+|
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~-~g~a~D-----l~h~~~-~~~~~~~~~~~~~~~~~~aDvv   73 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT-PGVAVD-----LSHIPT-AVKIKGFSGEDATPALEGADVV   73 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTH-HHHHHH-----HHTSCS-SCEEEEECSSCCHHHHTTCSEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccc-hhHHHH-----HHCCcc-ccCCcEEEcCCCccccCCCCEE
Confidence            37999995 999999998763   456799999974321 110000     000000 0000000113334568899999


Q ss_pred             EEeecCCccccCC-----C--C-------HHHHccCCCCcEEEEcCC
Q 019081          230 VCCLSLNKQTAGI-----V--N-------KSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       230 ~~~lPlt~~T~~l-----i--~-------~~~l~~mk~gailIN~sR  262 (346)
                      +++.-. +...+.     +  |       .+.+.+..|++++|.++.
T Consensus        74 vitaG~-~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN  119 (145)
T d2cmda1          74 LISAGV-RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (145)
T ss_dssp             EECCSC-CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             EECCCc-cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence            997632 222222     2  1       123445578899999954

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.69  E-value=0.032  Score=47.63  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      -|+|.|+|. |.||+.+++.|...|++|++++|+...
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            478999996 999999999999899999999987544

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.67  E-value=0.043  Score=44.20  Aligned_cols=108  Identities=10%  Similarity=0.113  Sum_probs=59.7

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA  226 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  226 (346)
                      ..+...+|+|||.|.+|..+|..+...|.  ++..||.+.......... ..+..    ............+. +.+++|
T Consensus        15 ~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alD-l~~~~----~~~~~~~~~~~~d~-~~~~~a   88 (159)
T d2ldxa1          15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALD-LQHGS----LFLSTPKIVFGKDY-NVSANS   88 (159)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHH-HHHTT----TTCSCCEEEEESSG-GGGTTE
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHH-HhCcc----hhcCCCeEEeccch-hhhccc
Confidence            34566799999999999999998887665  899999864321110000 00000    00000000012344 445899


Q ss_pred             CEEEEeecC--Cc-cccC-CC--CHHH-------HccCCCCcEEEEcCC
Q 019081          227 DVVVCCLSL--NK-QTAG-IV--NKSF-------LSSMKKGSLLVNIAR  262 (346)
Q Consensus       227 DiV~~~lPl--t~-~T~~-li--~~~~-------l~~mk~gailIN~sR  262 (346)
                      |+|++..-.  .+ +++. ++  |.+.       +....+++++|+++.
T Consensus        89 divvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          89 KLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             EEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            999987542  22 2221 22  1121       333468899999965

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.025  Score=48.68  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=36.1

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ++|+||++.|.|.+. ||+++|+.+...|++|+..+|+..+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            579999999999876 9999999999999999999997643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.65  E-value=0.038  Score=42.91  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=32.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .++++.|||.|.+|-++|..++..|.+|..+++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            367999999999999999999999999999997654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.64  E-value=0.032  Score=45.39  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=32.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.|++..+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r   65 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK   65 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH
Confidence            57899999999999999999999999 58888886544

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.43  E-value=0.096  Score=42.93  Aligned_cols=103  Identities=15%  Similarity=0.045  Sum_probs=63.2

Q ss_pred             ccCCCeEEEEec--CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLLGKTVFILGF--GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~g~tvgIiG~--G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .|.|.+|++||=  .++..+++..+..||+++.+..|..-........   .      +.......+    ...++++.+
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~d~~eai   72 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVA---Q------CKKFAEESGAKLTLTEDPKEAV   72 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHH---H------HHHHHHHHTCEEEEESCHHHHT
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHH---H------HHHHhhccCCeEEEEeChhhcc
Confidence            588999999994  5899999999999999999987632111000000   0      000000011    236899999


Q ss_pred             hcCCEEEEeecCCcc-------------ccCCC-CHHHHccCCCCcEEEEcC
Q 019081          224 SKADVVVCCLSLNKQ-------------TAGIV-NKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~-------------T~~li-~~~~l~~mk~gailIN~s  261 (346)
                      +.+|+|..-.=....             ....+ +......+|++++|.-+.
T Consensus        73 ~~aDvVyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          73 KGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             TTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             ccccEEEeehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            999999764421111             11223 344455678899888774

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.39  E-value=0.038  Score=44.97  Aligned_cols=38  Identities=21%  Similarity=0.422  Sum_probs=33.9

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.|++..+
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHH
Confidence            368899999999999999999999995 89999987654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.27  E-value=0.029  Score=45.59  Aligned_cols=111  Identities=11%  Similarity=0.054  Sum_probs=61.3

Q ss_pred             CeEEEEecCHHH--HHHHHHHc---cCC-CEEEEEcCCCccccccc-cccchhhhcccccccccccc------CCcCCHH
Q 019081          154 KTVFILGFGNIG--VELAKRLR---PFG-VKIIATKRSWASHSQVS-CQSSALAVKNGIIDDLVDEK------GCHEDIF  220 (346)
Q Consensus       154 ~tvgIiG~G~IG--~~vA~~l~---~~G-~~V~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~l~  220 (346)
                      .++.|||.|.+|  ..++..++   .+. -++..+|.+........ +.+.         .......      ....+..
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~---------~~~~~~~~~~~~~~~~td~~   72 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALA---------KRMVEKAGVPIEIHLTLDRR   72 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHH---------HHHHHHTTCCCEEEEESCHH
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHH---------HHHHHhcCCCceeeecCCch
Confidence            379999999776  44544443   333 48999998653211000 0000         0001110      0236788


Q ss_pred             HHhhcCCEEEEeecCCc-----------cccCCCC----------------------HHHHccCCCCcEEEEcCCCCCCC
Q 019081          221 EFASKADVVVCCLSLNK-----------QTAGIVN----------------------KSFLSSMKKGSLLVNIARGGLLD  267 (346)
Q Consensus       221 ell~~aDiV~~~lPlt~-----------~T~~li~----------------------~~~l~~mk~gailIN~sRg~~vd  267 (346)
                      +.++.||+|+++.....           ...|++.                      .+.+....|+++|||++-.--+-
T Consensus        73 ~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~  152 (169)
T d1s6ya1          73 RALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMV  152 (169)
T ss_dssp             HHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHH
T ss_pred             hhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHH
Confidence            89999999999885321           1222221                      13455567999999997663333


Q ss_pred             HHHHHH
Q 019081          268 YEAIAH  273 (346)
Q Consensus       268 ~~aL~~  273 (346)
                      ..++.+
T Consensus       153 t~~~~k  158 (169)
T d1s6ya1         153 TEAVLR  158 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.011  Score=50.91  Aligned_cols=38  Identities=26%  Similarity=0.424  Sum_probs=33.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      ..|++++|.|+|+|.+|..+|..|...|. ++..+|...
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            45999999999999999999999999998 688888644

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.15  E-value=0.044  Score=46.23  Aligned_cols=35  Identities=26%  Similarity=0.224  Sum_probs=32.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ..++|.|||.|..|..+|..|+..|.+|++++++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999999864

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.14  E-value=0.038  Score=46.17  Aligned_cols=35  Identities=31%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +-|+|.|||.|-.|...|..|+..|++|+++|+..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            34689999999999999999999999999999753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.12  E-value=0.037  Score=44.04  Aligned_cols=37  Identities=22%  Similarity=0.365  Sum_probs=33.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .|++|.|+|.|.||...++.++..|.+|++++++..+
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r   63 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEK   63 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHH
Confidence            4789999999999999999999999999999876543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.04  E-value=0.042  Score=47.37  Aligned_cols=40  Identities=20%  Similarity=0.393  Sum_probs=35.9

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       148 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      |.+|.||++.|.|. +.||+++|+.|...|++|++.||+..
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES   41 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46799999999997 78999999999999999999998753

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.14  Score=40.79  Aligned_cols=97  Identities=21%  Similarity=0.191  Sum_probs=58.5

Q ss_pred             cCCCeEEEEec---CHHHHHHHHHHccCCCE-EEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHH
Q 019081          151 LLGKTVFILGF---GNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEF  222 (346)
Q Consensus       151 l~g~tvgIiG~---G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~el  222 (346)
                      |.|.+|++||=   |++..+++..+..||.. +++..+.....+...             .......+    ...++++.
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~-------------~~~~~~~~~~~~~~~d~~~a   68 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYI-------------LDMLDEKGIAWSLHSSIEEV   68 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHH-------------HHHHHHTTCCEEECSCSTTT
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHH-------------HHHHhhhccccccccCHHHH
Confidence            67999999996   77999999999999754 555543221111000             00111111    23688899


Q ss_pred             hhcCCEEEEeecCCcc----------ccCCCCHHHHccCCCCcEEEEc
Q 019081          223 ASKADVVVCCLSLNKQ----------TAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       223 l~~aDiV~~~lPlt~~----------T~~li~~~~l~~mk~gailIN~  260 (346)
                      ++++|+|...--..+.          ....++.+.++.++++++|.-+
T Consensus        69 ~~~aDvvy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHc  116 (160)
T d1ekxa2          69 MAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  116 (160)
T ss_dssp             GGGCSEEEECCCCGGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECC
T ss_pred             hCcCceEEeecccccccchHHHHHHHHHhhccHHHHHhcCcceeeecC
Confidence            9999999764322111          1233456666777777776655

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.98  E-value=0.039  Score=44.81  Aligned_cols=38  Identities=21%  Similarity=0.363  Sum_probs=33.3

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.|++..+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHH
Confidence            467899999999999999999999997 79999886544

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.97  E-value=0.071  Score=44.84  Aligned_cols=39  Identities=28%  Similarity=0.292  Sum_probs=34.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..-.+++|.|||.|..|-..|..|+..|++|+.+++...
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            445889999999999999999999999999999997553

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.88  E-value=0.015  Score=46.75  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=31.4

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      .|.+|.|+|. |.+|...++.++..|. +|++.+++..+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~   65 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEA   65 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhh
Confidence            4779999995 9999999999998885 89999876543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.88  E-value=0.034  Score=47.90  Aligned_cols=35  Identities=29%  Similarity=0.255  Sum_probs=32.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ..|+|.|||.|..|-..|..|+..|++|+++++..
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999999754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.82  E-value=0.034  Score=48.03  Aligned_cols=40  Identities=23%  Similarity=0.388  Sum_probs=35.6

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .+|.||++.|.|.+. ||+++|+.|...|++|++.+++..+
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            468999999999876 9999999999999999999987654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.81  E-value=0.041  Score=47.24  Aligned_cols=38  Identities=21%  Similarity=0.457  Sum_probs=33.9

Q ss_pred             cccCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCCC
Q 019081          149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .+|.||++.|.|.+   .||+++|++|...|++|++.+++.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            47899999999975   599999999999999999888764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.78  E-value=0.041  Score=47.58  Aligned_cols=39  Identities=31%  Similarity=0.417  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +.|.||++.|.|.+ .||+++|+.|...|++|+..|++..
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35899999999985 5999999999999999999998754

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=92.66  E-value=0.051  Score=46.99  Aligned_cols=38  Identities=24%  Similarity=0.442  Sum_probs=34.4

Q ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +|.||++.|.| .+.||+++|+.+...|++|++.+|+..
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK   41 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            68999999999 566999999999999999999998754

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.66  E-value=0.066  Score=42.03  Aligned_cols=101  Identities=14%  Similarity=0.124  Sum_probs=66.2

Q ss_pred             CCCeEEEEec----CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          152 LGKTVFILGF----GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       152 ~g~tvgIiG~----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      .-|+++|||.    |+.|..+++.|+.+|++|+.+++....-                  ....   .+.++.++-..-|
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i------------------~G~~---~~~sl~dlp~~iD   76 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV------------------LGRK---CYPSVLDIPDKIE   76 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------------------TTEE---CBSSGGGCSSCCS
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc------------------CCCc---ccccccccCccce
Confidence            4579999996    4799999999999999999998764321                  1111   3567888878899


Q ss_pred             EEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCC
Q 019081          228 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL  280 (346)
Q Consensus       228 iV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i  280 (346)
                      ++++++|. +.+..++.+-.  .+...++++..+   ..+++ +.+.+++..+
T Consensus        77 ~v~i~vp~-~~~~~~~~e~~--~~g~k~v~~~~G---~~~ee-~~~~a~~~gi  122 (139)
T d2d59a1          77 VVDLFVKP-KLTMEYVEQAI--KKGAKVVWFQYN---TYNRE-ASKKADEAGL  122 (139)
T ss_dssp             EEEECSCH-HHHHHHHHHHH--HHTCSEEEECTT---CCCHH-HHHHHHHTTC
T ss_pred             EEEEEeCH-HHHHHHHHHHH--HhCCCEEEEecc---ccCHH-HHHHHHHCCC
Confidence            99999984 33444443322  234456666554   34444 4444554444

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.047  Score=46.74  Aligned_cols=38  Identities=32%  Similarity=0.548  Sum_probs=34.2

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.|.+ .||+++|++|...|++|++.+|+..
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~   42 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA   42 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            5899999999976 5999999999999999999998754

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.49  E-value=0.042  Score=47.11  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEec-CH--HHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GN--IGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~--IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      -|.||++.|.|. |.  ||+++|+.|...|++|+..+++..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~   43 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRL   43 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChH
Confidence            378999999996 54  999999999999999999887643

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.48  E-value=0.048  Score=46.58  Aligned_cols=39  Identities=26%  Similarity=0.354  Sum_probs=34.8

Q ss_pred             ccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       150 ~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .|.||++.|.|.+. ||+++|+.|...|++|++.+|+...
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL   41 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            47899999999877 9999999999999999999987543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.44  E-value=0.049  Score=47.07  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=34.9

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      +|.||++.|.|.+ .||+++|+.|...|++|+..+|+..+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            6899999999987 59999999999999999999987543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=92.43  E-value=0.058  Score=46.47  Aligned_cols=37  Identities=24%  Similarity=0.221  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEec-C--HHHHHHHHHHccCCCEEEEEcCCC
Q 019081          150 TLLGKTVFILGF-G--NIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       150 ~l~g~tvgIiG~-G--~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .|.||++.|.|. |  .||+++|+.|...|++|++.+|+.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            378999999997 4  499999999999999999999874

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.32  E-value=0.051  Score=46.79  Aligned_cols=39  Identities=21%  Similarity=0.437  Sum_probs=34.7

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      +|.||++.|.|.+ .||+++|+.|...|++|++.+++..+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            5899999999985 49999999999999999999987543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.16  E-value=0.051  Score=47.34  Aligned_cols=38  Identities=32%  Similarity=0.427  Sum_probs=33.8

Q ss_pred             ccccCCCeEEEEecC---HHHHHHHHHHccCCCEEEEEcCC
Q 019081          148 GETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G---~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      ..+|.||++.|.|.+   .||+++|+.|...|++|++.+++
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            357999999999986   59999999999999999988764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.10  E-value=0.065  Score=43.88  Aligned_cols=71  Identities=21%  Similarity=0.149  Sum_probs=43.2

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCCCE--EEEEcCCCccccccccccchhhhccccccccccc-cCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFGVK--IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G~~--V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDiV  229 (346)
                      +||.|.| .|.||+.+++.|...|.+  |+...|+........         .+  ...... .....++.++++.+|.|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~---------~~--~~~~~~d~~~~~~~~~~~~~~d~v   72 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG---------GE--ADVFIGDITDADSINPAFQGIDAL   72 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT---------CC--TTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhcc---------CC--cEEEEeeeccccccccccccceee
Confidence            5899999 699999999999888865  555556543210000         00  000000 01234567788999999


Q ss_pred             EEeecC
Q 019081          230 VCCLSL  235 (346)
Q Consensus       230 ~~~lPl  235 (346)
                      +.+...
T Consensus        73 i~~a~~   78 (252)
T d2q46a1          73 VILTSA   78 (252)
T ss_dssp             EECCCC
T ss_pred             EEEEee
Confidence            876543

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.09  E-value=0.047  Score=46.65  Aligned_cols=40  Identities=28%  Similarity=0.477  Sum_probs=35.6

Q ss_pred             cccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       149 ~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .+|.||++.|.|.+ .||+++|+.|...|++|++.+|+...
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   43 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA   43 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence            36899999999987 59999999999999999999987654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.09  E-value=0.044  Score=47.59  Aligned_cols=40  Identities=30%  Similarity=0.384  Sum_probs=35.6

Q ss_pred             ccccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       148 ~~~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..+|.||++.|.| .+.||+++|+.|...|++|++.+++..
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~   53 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   53 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            4579999999999 789999999999999999999887643

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=92.01  E-value=0.053  Score=46.29  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=33.1

Q ss_pred             cCCCeEEEEecCH---HHHHHHHHHccCCCEEEEEcCCCc
Q 019081          151 LLGKTVFILGFGN---IGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       151 l~g~tvgIiG~G~---IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      |.||++.|.|.+.   ||+++|+.|...|++|++.+++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            7899999999864   999999999999999999988743

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.88  E-value=0.063  Score=46.34  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=34.5

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +|.||++.|.|.+ .||+++|+.|...|++|++.+|+..
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            6899999999986 5999999999999999999998654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.85  E-value=0.081  Score=46.91  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|+|.|||.|-.|...|..|+..|.+|++++.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            58999999999999999999999999999997653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.82  E-value=0.053  Score=44.87  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=32.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.|++..+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchh
Confidence            57799999999999999999998888 78898886543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.049  Score=47.19  Aligned_cols=39  Identities=38%  Similarity=0.568  Sum_probs=35.1

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .-|.||++.|.|.+. ||+++|+.|...|++|++.+|+..
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            349999999999876 999999999999999999998754

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=91.72  E-value=0.12  Score=44.54  Aligned_cols=35  Identities=17%  Similarity=0.009  Sum_probs=27.0

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ...|++|++||+-    ...++++.-|+++.++|+++..
T Consensus       119 ~~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~  153 (251)
T d2h1qa1         119 EVKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE  153 (251)
T ss_dssp             TTTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT
T ss_pred             ccCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC
Confidence            3479999999985    4555667778999999987643

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.67  E-value=0.12  Score=39.89  Aligned_cols=107  Identities=11%  Similarity=0.149  Sum_probs=66.4

Q ss_pred             cCCCeEEEEec----CHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc
Q 019081          151 LLGKTVFILGF----GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK  225 (346)
Q Consensus       151 l~g~tvgIiG~----G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  225 (346)
                      ++-++|+|||.    |..|..+.+.|+..| .+|+.+++....-                  ....   .+.++.|+=..
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i------------------~G~~---~y~sl~dlp~~   64 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV------------------QGVK---AYKSVKDIPDE   64 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE------------------TTEE---CBSSTTSCSSC
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc------------------CCeE---eecchhhcCCC
Confidence            45689999997    899999999998765 6999998764321                  1111   34677777778


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCCCC-----CCHHHHHHHHHhCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-----LDYEAIAHYLECGHL  280 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~-----vd~~aL~~aL~~g~i  280 (346)
                      -|.+++++|. +.+..++.+ ..+.=-++++++--+-++.     ..+++|.+..++..+
T Consensus        65 vDlvvi~vp~-~~~~~~~~~-~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi  122 (129)
T d2csua1          65 IDLAIIVVPK-RFVKDTLIQ-CGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM  122 (129)
T ss_dssp             CSEEEECSCH-HHHHHHHHH-HHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             CceEEEecCh-HHhHHHHHH-HHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence            9999999994 555555532 2222223444444333342     223455555555433

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.54  E-value=0.075  Score=45.37  Aligned_cols=38  Identities=24%  Similarity=0.271  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.|. +.||+++|+.|...|++|+..+|+..
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            488999999997 46999999999999999999998754

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.47  E-value=0.084  Score=44.69  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=33.4

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      |.||++.|.|. +.||+++|+.|...|++|++.+|+..
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE   39 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            78999999997 56999999999999999999998643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.40  E-value=0.076  Score=45.93  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.|.+ .||+++|+.|...|++|++.|++..
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999954 5999999999999999999998754

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=91.38  E-value=0.081  Score=45.28  Aligned_cols=38  Identities=29%  Similarity=0.258  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.|.+ .||+++|+.|...|++|++.|++..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            5899999999985 5999999999999999999998654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.36  E-value=0.15  Score=43.22  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=29.9

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .+|.|.|. |-||+.+++.|...|++|++.|++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46899997 9999999999999999999999854

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=91.30  E-value=0.23  Score=39.14  Aligned_cols=90  Identities=18%  Similarity=0.111  Sum_probs=46.2

Q ss_pred             eEEEEe-cCHHHHHHHHHHcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccCCc-CCHHHHhhcCCE
Q 019081          155 TVFILG-FGNIGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH-EDIFEFASKADV  228 (346)
Q Consensus       155 tvgIiG-~G~IG~~vA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~~aDi  228 (346)
                      +||||| .|.+|+++.++|..    -..++..+..+........     +         ........ ..-.+.+.++|+
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~-----~---------~~~~~~~~~~~~~~~~~~~Dv   67 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPN-----F---------GKDAGMLHDAFDIESLKQLDA   67 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCC-----S---------SSCCCBCEETTCHHHHTTCSE
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccc-----c---------CCcceeeecccchhhhccccE
Confidence            799998 59999999987743    2356665543322111100     0         00000011 112355789999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      |++|+|.. .+..+.  ..+..-..++++|+.|
T Consensus        68 vF~alp~~-~s~~~~--~~l~~~g~~~~VIDlS   97 (147)
T d1mb4a1          68 VITCQGGS-YTEKVY--PALRQAGWKGYWIDAA   97 (147)
T ss_dssp             EEECSCHH-HHHHHH--HHHHHTTCCSEEEESS
T ss_pred             EEEecCch-HHHHHh--HHHHHcCCceEEEeCC
Confidence            99999953 222221  1222223345677765

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=91.27  E-value=0.056  Score=46.03  Aligned_cols=70  Identities=14%  Similarity=0.160  Sum_probs=39.8

Q ss_pred             CCeEEEEecCHHH----HHHHHHHcc--CCCEEE-EEcCCCccccccccccchhhhcccccccc-ccccCCcCCHHHHhh
Q 019081          153 GKTVFILGFGNIG----VELAKRLRP--FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFAS  224 (346)
Q Consensus       153 g~tvgIiG~G~IG----~~vA~~l~~--~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~  224 (346)
                      --+|||||+|.+|    +.-...++.  -+++|+ ++|++........             ... ......+.++++++.
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~   82 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTI-------------EQLQLKHATGFDSLESFAQ   82 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHH-------------HHTTCTTCEEESCHHHHHH
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHH-------------Hhcccccceeecchhhccc
Confidence            3589999999854    444444543  367877 4677543311100             000 000012468999985


Q ss_pred             --cCCEEEEeecC
Q 019081          225 --KADVVVCCLSL  235 (346)
Q Consensus       225 --~aDiV~~~lPl  235 (346)
                        +-|+|++++|.
T Consensus        83 ~~~iD~V~i~tp~   95 (237)
T d2nvwa1          83 YKDIDMIVVSVKV   95 (237)
T ss_dssp             CTTCSEEEECSCH
T ss_pred             ccccceeeccCCC
Confidence              46788998874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.14  E-value=0.11  Score=41.77  Aligned_cols=37  Identities=22%  Similarity=0.440  Sum_probs=32.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++..+
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHH
Confidence            67899999999999999999999985 89999887654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.01  E-value=0.066  Score=45.77  Aligned_cols=38  Identities=32%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +|.||++.|.|. +.||+++|+++...|++|++.+|+..
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            478999999885 56999999999999999999998754

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.00  E-value=0.061  Score=46.47  Aligned_cols=40  Identities=28%  Similarity=0.329  Sum_probs=35.2

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ..|.||++.|.|.+. ||+++|+.|...|++|+..+|+..+
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYE   44 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            368999999999865 9999999999999999999987543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.97  E-value=0.097  Score=45.49  Aligned_cols=38  Identities=29%  Similarity=0.410  Sum_probs=34.5

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.|. +.||+++|+.|...|++|+..+|+..
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   40 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE   40 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999997 68999999999999999999998754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.94  E-value=0.063  Score=46.65  Aligned_cols=38  Identities=32%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +|.||++.|.|. +.||+++|+.|...|++|+..+|+..
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            589999999987 55999999999999999999998754

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.86  E-value=0.082  Score=45.45  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+..
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLE   40 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            488999999998 77999999999999999999998753

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.84  E-value=0.091  Score=44.98  Aligned_cols=38  Identities=18%  Similarity=0.235  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+|+..
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~   41 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE   41 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999998 55999999999999999999998754

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.78  E-value=0.092  Score=45.25  Aligned_cols=38  Identities=29%  Similarity=0.336  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.|.+ .||+++|+.|...|++|++.+++..
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   39 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE   39 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4789999999976 5999999999999999999998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=90.69  E-value=0.091  Score=44.02  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +|.|||.|..|-..|..|+..|++|++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            69999999999999999999999999999754

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=90.64  E-value=0.57  Score=41.31  Aligned_cols=125  Identities=11%  Similarity=0.146  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccC----CC-------EEEEEcC
Q 019081          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  184 (346)
Q Consensus       116 vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~----G~-------~V~~~d~  184 (346)
                      +|=-+++.+++.+|-.                ++.|...++.|+|.|.-|-.+|+.+...    |+       +++.+|+
T Consensus         4 Ta~V~lAglinAlki~----------------gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~   67 (308)
T d1o0sa1           4 TASVIVAGLLTCTRVT----------------KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDI   67 (308)
T ss_dssp             HHHHHHHHHHHHHHHH----------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEET
T ss_pred             HHHHHHHHHHHHHHHh----------------CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeC
Confidence            4555666777766632                5678999999999999999999987643    32       3888887


Q ss_pred             CCccccccccccchhhhccccccccccccCCcCCHHHHhhcC--CEEEEeecCCccccCCCCHHHHccC---CCCcEEEE
Q 019081          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSM---KKGSLLVN  259 (346)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiV~~~lPlt~~T~~li~~~~l~~m---k~gailIN  259 (346)
                      ..--...... ...+  +    ..+........++.++++..  ++++-.    ....|+++++.++.|   .+.+++.=
T Consensus        68 ~Glv~~~r~d-~~~~--k----~~~a~~~~~~~~l~~~i~~~kptvliG~----s~~~g~ft~evv~~Ma~~~~~PIIFa  136 (308)
T d1o0sa1          68 DGLVTKNRKE-MNPR--H----VQFAKDMPETTSILEVIRAARPGALIGA----STVRGAFNEEVIRAMAEINERPIIFA  136 (308)
T ss_dssp             TEECBTTCSS-CCGG--G----TTTCBSSCCCCCHHHHHHHHCCSEEEEC----SSCTTCSCHHHHHHHHHHCSSCEEEE
T ss_pred             CCCccCCCcc-cCHH--H----HHHHHhcccCCcHHHHHhccccccEEec----ccccCCCCHHHHHHHHhhCCCcEEEE
Confidence            5421100000 0000  0    11122212335777877644  565553    234578898888766   48999999


Q ss_pred             cCCCCCCC
Q 019081          260 IARGGLLD  267 (346)
Q Consensus       260 ~sRg~~vd  267 (346)
                      .|....--
T Consensus       137 LSNPtp~~  144 (308)
T d1o0sa1         137 LSNPTSKA  144 (308)
T ss_dssp             CCSSGGGC
T ss_pred             ccCCCCCC
Confidence            99876533

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=90.63  E-value=0.065  Score=43.58  Aligned_cols=30  Identities=27%  Similarity=0.479  Sum_probs=26.6

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKR  184 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~  184 (346)
                      +|||=|||+|||.+.+.+...+.+|++.+.
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            799999999999999998877888887764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=90.62  E-value=0.11  Score=45.89  Aligned_cols=38  Identities=26%  Similarity=0.325  Sum_probs=33.9

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       151 l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ..||+|.|.| .|-||+.+++.|...|++|++++|+..+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            3689999999 7899999999999999999999986543

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=90.59  E-value=0.11  Score=44.37  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.| -+.||+++|+.|...|++|++.+++..
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            37899999998 678999999999999999999998754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.58  E-value=0.11  Score=41.52  Aligned_cols=35  Identities=29%  Similarity=0.591  Sum_probs=31.8

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .|.+|.|+|. |.+|....+.++.+|++|++.+++.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc
Confidence            5889999995 9999999999999999999988754

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.43  E-value=0.075  Score=45.67  Aligned_cols=37  Identities=30%  Similarity=0.435  Sum_probs=31.9

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCC
Q 019081          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      ++|.||++.|.|.+. ||+++|+.|...|++|++.+++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            579999999998765 9999999999999999875543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.43  E-value=0.1  Score=40.31  Aligned_cols=30  Identities=23%  Similarity=0.448  Sum_probs=25.5

Q ss_pred             eEEEEec-CHHHHHHHHHHccCCCEEEE-EcC
Q 019081          155 TVFILGF-GNIGVELAKRLRPFGVKIIA-TKR  184 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G~~V~~-~d~  184 (346)
                      +|+|+|+ |+||+.+++.+..-|+++.+ +|+
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~   33 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV   33 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECC
Confidence            7999996 99999999999988998664 443

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=0.075  Score=42.79  Aligned_cols=32  Identities=31%  Similarity=0.373  Sum_probs=25.0

Q ss_pred             CeEEEEec-CHHHHHHHHHHcc-CCCEEE-EEcCC
Q 019081          154 KTVFILGF-GNIGVELAKRLRP-FGVKII-ATKRS  185 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~-~G~~V~-~~d~~  185 (346)
                      -+|+|+|+ |+||+++++.+.. -++++. ++++.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~   39 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALERE   39 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecc
Confidence            37999995 9999999998764 588864 45654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=90.34  E-value=0.075  Score=43.13  Aligned_cols=105  Identities=21%  Similarity=0.171  Sum_probs=58.7

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhcccccccccccc-CCcCCHHHHhhcCCEEEEee
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVVCCL  233 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~~~l  233 (346)
                      +|||=|||+|||.+.|.+..-+.+|.+++.....  ...    .|-.+       .+.. +...  .++-...|.+++  
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~--~~~----ayLl~-------yDS~hG~~~--~~v~~~~~~l~i--   64 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALINDLTDN--KTL----AHLLK-------YDSIYHRFP--GEVAYDDQYLYV--   64 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCH--HHH----HHHHH-------CCTTTCSCS--SCEEECSSEEEE--
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEECCCcch--hhh----hheee-------cccccCccc--cccccccceeEe--
Confidence            7999999999999999888778898888753211  100    00000       1111 1111  011233455544  


Q ss_pred             cCCccccCCCCHH---HHccCCCCcEEEEcCCCCCCCHHHHHHHHHhC
Q 019081          234 SLNKQTAGIVNKS---FLSSMKKGSLLVNIARGGLLDYEAIAHYLECG  278 (346)
Q Consensus       234 Plt~~T~~li~~~---~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g  278 (346)
                        +.....+....   .+..-+-|.-+|=-+.|.-.+.+.+...|+.|
T Consensus        65 --~g~~I~~~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g  110 (168)
T d2g82a1          65 --DGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG  110 (168)
T ss_dssp             --TTEEEEEECCSSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT
T ss_pred             --cceeEEEEecCChHHCcccccCCceeEeccccccchHHhhhhhccc
Confidence              22333333332   23322345556666688888888888888866

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.33  E-value=0.13  Score=43.58  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=31.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +.++|.|||.|.-|-..|..|+..|++|++++.+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34579999999999999999999999999998654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.28  E-value=0.076  Score=45.73  Aligned_cols=36  Identities=28%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             cCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCC
Q 019081          151 LLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       151 l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      |.||++.|.|.+. ||+++|+.|...|++|++.+++.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            6899988887765 99999999999999999999864

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.21  E-value=0.12  Score=38.56  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=28.8

Q ss_pred             CCeEEEEecCHHHHHHHHHH---ccCCCEEEEEcCCCc
Q 019081          153 GKTVFILGFGNIGVELAKRL---RPFGVKIIATKRSWA  187 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l---~~~G~~V~~~d~~~~  187 (346)
                      .+++.|||.|.+|-++|..+   +..|.+|..+.+...
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            37999999999999999764   456999999987543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.19  E-value=0.21  Score=41.74  Aligned_cols=75  Identities=28%  Similarity=0.385  Sum_probs=48.2

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCC
Q 019081          151 LLGKTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD  227 (346)
Q Consensus       151 l~g~tvgIiG-~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  227 (346)
                      ..+|+|.|.| .|.||+.+++.|..-|.  +|++++|+...........    +     ...........++.+.+..+|
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~----i-----~~~~~D~~~~~~~~~~~~~~d   82 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKN----V-----NQEVVDFEKLDDYASAFQGHD   82 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGG----C-----EEEECCGGGGGGGGGGGSSCS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccce----e-----eeeeecccccccccccccccc
Confidence            5678999998 69999999999977674  8999998654321111000    0     000000112346777789999


Q ss_pred             EEEEeec
Q 019081          228 VVVCCLS  234 (346)
Q Consensus       228 iV~~~lP  234 (346)
                      +++.++.
T Consensus        83 ~vi~~~~   89 (232)
T d2bkaa1          83 VGFCCLG   89 (232)
T ss_dssp             EEEECCC
T ss_pred             ccccccc
Confidence            9988764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.14  Score=43.94  Aligned_cols=40  Identities=23%  Similarity=0.378  Sum_probs=35.3

Q ss_pred             ccccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +..|.||++.|.|.+ .||+++|+.|...|++|++.+|+..
T Consensus         5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_           5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVG   45 (257)
T ss_dssp             CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            356999999999974 7999999999999999999998754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.18  E-value=0.12  Score=45.70  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~-IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..|.||++.|.|.+. ||+++|+.|...|++|++.|++..
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            468999999998765 999999999999999999988653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.11  Score=45.88  Aligned_cols=39  Identities=23%  Similarity=0.419  Sum_probs=34.6

Q ss_pred             cccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..|.||++.|.|.+ .||+++|+.|...|++|++.+|+..
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~   47 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLE   47 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35999999999975 4999999999999999999998754

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.16  E-value=0.63  Score=40.76  Aligned_cols=137  Identities=9%  Similarity=0.112  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-----------EEEEEcC
Q 019081          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR  184 (346)
Q Consensus       116 vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-----------~V~~~d~  184 (346)
                      +|=-+++-+++.+|-.                ++.|...++.|.|.|.-|-.+|+.+...+.           +++.+|+
T Consensus         4 Ta~V~lAglinAlki~----------------gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~   67 (294)
T d1pj3a1           4 TAAVALAGLLAAQKVI----------------SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDK   67 (294)
T ss_dssp             HHHHHHHHHHHHHHHH----------------CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEET
T ss_pred             HHHHHHHHHHHHHHHh----------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeC
Confidence            4555677777777642                577999999999999999999998765433           4999997


Q ss_pred             CCccccccccccchhhhccccccccccccC---CcCCHHHHhh--cCCEEEEeecCCccccCCCCHHHHc---cCCCCcE
Q 019081          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KADVVVCCLSLNKQTAGIVNKSFLS---SMKKGSL  256 (346)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~aDiV~~~lPlt~~T~~li~~~~l~---~mk~gai  256 (346)
                      ..--..........+       ...+....   ...+|.++++  +.|+++-..    ...++++++.++   .|.+.++
T Consensus        68 ~Glv~~~r~~~~~~~-------k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S----~~~g~ft~evi~~Ma~~~~~PI  136 (294)
T d1pj3a1          68 YGLLVKGRKAKIDSY-------QEPFTHSAPESIPDTFEDAVNILKPSTIIGVA----GAGRLFTPDVIRAMASINERPV  136 (294)
T ss_dssp             TEECBTTCSSCCCTT-------TGGGCBCCCSSCCSSHHHHHHHHCCSEEEECC----CSSCCSCHHHHHHHHHHCSSCE
T ss_pred             CCCccCCCCcccHHH-------HHHhhccccccchhHHHHHHHhcCCceEEEec----CCCCcCCHHHHHHHHhcCCCcE
Confidence            531100000000000       01111111   1247888876  788887653    234688888775   4569999


Q ss_pred             EEEcCCCCCC---CHHHHHHHHHhCCC
Q 019081          257 LVNIARGGLL---DYEAIAHYLECGHL  280 (346)
Q Consensus       257 lIN~sRg~~v---d~~aL~~aL~~g~i  280 (346)
                      +.=.|....-   ..++.++. ..|+.
T Consensus       137 IFaLSNPt~~~e~~~~~a~~~-t~gra  162 (294)
T d1pj3a1         137 IFALSNPTAQAECTAEEAYTL-TEGRC  162 (294)
T ss_dssp             EEECCSSGGGCSCCHHHHHHH-TTTCC
T ss_pred             EEEccCCCCcCCcCHHHHHhh-ccCce
Confidence            9999987543   33444433 34554

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.15  E-value=0.083  Score=45.41  Aligned_cols=38  Identities=29%  Similarity=0.361  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.|.+ .||+++|+.|...|++|++.+++..
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5899999999965 5999999999999999999998654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.14  E-value=0.15  Score=41.33  Aligned_cols=111  Identities=19%  Similarity=0.216  Sum_probs=59.2

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      .+|+|+| .|.+|+++.+.|... .+++.....+..........+..++...+......   ....+.+....++|++++
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~dvvf~   78 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPL---QPMSDVRDFSADVDVVFL   78 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBE---EEESCGGGTCTTCCEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccccccccccccccccccccccc---ccchhhhhhhcccceeec
Confidence            3799999 899999999999876 66765542111100000000000000000000000   012344555678999999


Q ss_pred             eecCCccccCCCCHHH-HccCCCCcEEEEcCCCCCCCHHHHHH
Q 019081          232 CLSLNKQTAGIVNKSF-LSSMKKGSLLVNIARGGLLDYEAIAH  273 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~-l~~mk~gailIN~sRg~~vd~~aL~~  273 (346)
                      ++|....      .+. -...+.|..+|+.|..--.+....++
T Consensus        79 alp~~~s------~~~~~~~~~~~~~vIDlSadfRl~~~~~~~  115 (179)
T d2g17a1          79 ATAHEVS------HDLAPQFLQAGCVVFDLSGAFRVNDRAFYE  115 (179)
T ss_dssp             CSCHHHH------HHHHHHHHHTTCEEEECSSTTSSSCHHHHH
T ss_pred             cccchhH------HHHhhhhhhcCceeeccccccccccccccc
Confidence            9985322      121 12246789999998766665555444

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.10  E-value=0.77  Score=37.03  Aligned_cols=104  Identities=15%  Similarity=0.170  Sum_probs=61.2

Q ss_pred             CeEEEEec-CHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhcccccccccccc-CCcCCHHHHhhcCCEEE
Q 019081          154 KTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCHEDIFEFASKADVVV  230 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~  230 (346)
                      .+|||+|. |.+|+.+.+.|..+ .+++..+-.+......     ....++     ...... ....+.+++..++|+|+
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~-----i~~~~p-----~~~~~~~~~~~~~~~~~~~~dvvf   71 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKK-----LEEIFP-----STLENSILSEFDPEKVSKNCDVLF   71 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSB-----HHHHCG-----GGCCCCBCBCCCHHHHHHHCSEEE
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCc-----ccccCc-----hhhccccccccCHhHhccccceEE
Confidence            37999995 99999999999753 4566655322111100     000000     000100 12356778888999999


Q ss_pred             EeecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHHHHHH
Q 019081          231 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHY  274 (346)
Q Consensus       231 ~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~a  274 (346)
                      +++|....      .+..... .+..+|+.|-.==.+....++.
T Consensus        72 ~a~p~~~s------~~~~~~~-~~~~VIDlSadfRl~~~~~y~~  108 (176)
T d1vkna1          72 TALPAGAS------YDLVREL-KGVKIIDLGADFRFDDPGVYRE  108 (176)
T ss_dssp             ECCSTTHH------HHHHTTC-CSCEEEESSSTTTCSSHHHHHH
T ss_pred             EccccHHH------HHHHHhh-ccceEEecCccccccchhhHHH
Confidence            99996432      2333333 5789999986655665555553

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.07  E-value=0.14  Score=36.90  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=30.0

Q ss_pred             CeEEEEecCHHHH-HHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVFILGFGNIGV-ELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~G~IG~-~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .++=+||-|.+|- ++|+.|+..|+.|.++|+...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~   36 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET   36 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            5788999999996 789999999999999998653

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=90.06  E-value=0.086  Score=42.73  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=42.9

Q ss_pred             CCeEEEEecCHHHHHHH---HHHc--cC-CCEEEEEcCCCccccccccccchhhhccccccccccccC------CcCCHH
Q 019081          153 GKTVFILGFGNIGVELA---KRLR--PF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG------CHEDIF  220 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA---~~l~--~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~  220 (346)
                      ..+++|||.|.+|...+   ..++  .+ +-++..+|.+..+....... .         ........      ...+.+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~-~---------~~~~~~~~~~~~i~~~td~~   71 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI-A---------KKYVEEVGADLKFEKTMNLD   71 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH-H---------HHHHHHTTCCCEEEEESCHH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHH-H---------HHHHHhcCCCeEEEEeCChh
Confidence            35899999999996532   2333  33 35999999875432110000 0         00111111      236899


Q ss_pred             HHhhcCCEEEEee
Q 019081          221 EFASKADVVVCCL  233 (346)
Q Consensus       221 ell~~aDiV~~~l  233 (346)
                      +.++.||+|++..
T Consensus        72 eaL~dad~Vv~~~   84 (171)
T d1obba1          72 DVIIDADFVINTA   84 (171)
T ss_dssp             HHHTTCSEEEECC
T ss_pred             hcccCCCeEeeec
Confidence            9999999999875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.90  E-value=0.17  Score=43.19  Aligned_cols=39  Identities=26%  Similarity=0.226  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..|.||++.|.|. +.||+++|+.|...|++|+.++|+..
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~   45 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQK   45 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            4678999999998 57999999999999999999998654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.89  E-value=0.086  Score=45.81  Aligned_cols=38  Identities=29%  Similarity=0.333  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.|.+ .||+++|+.|...|++|++.+|+..
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   39 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNED   39 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4789999999885 5999999999999999999998754

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.73  E-value=0.21  Score=40.27  Aligned_cols=75  Identities=13%  Similarity=0.083  Sum_probs=41.4

Q ss_pred             CeEEEEecCHHHHHH--HHHH---ccC-CCEEEEEcCCCccccccccccchhhhccccccccccc--cCCcCCHHHHhhc
Q 019081          154 KTVFILGFGNIGVEL--AKRL---RPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASK  225 (346)
Q Consensus       154 ~tvgIiG~G~IG~~v--A~~l---~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~  225 (346)
                      -+|.|||.|.+|...  ...+   ..| +-++..+|....+..........+.      ......  .....+..|.++.
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~------~~~~~~~~~~~~~d~~eal~~   77 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFI------REKAPDIEFAATTDPEEAFTD   77 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHH------HHHCTTSEEEEESCHHHHHSS
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHH------HHhCCCcceEecCChhhccCC
Confidence            479999999887542  2333   222 2479999987543211000000000      000000  0124688999999


Q ss_pred             CCEEEEeec
Q 019081          226 ADVVVCCLS  234 (346)
Q Consensus       226 aDiV~~~lP  234 (346)
                      ||+|+++.-
T Consensus        78 AD~Vvitag   86 (167)
T d1u8xx1          78 VDFVMAHIR   86 (167)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.63  E-value=0.18  Score=42.57  Aligned_cols=37  Identities=14%  Similarity=0.171  Sum_probs=32.3

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      .||++.|.|. |.||+++|+.+...|++|...|+....
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4899999998 569999999999999999999876543

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.59  E-value=0.15  Score=41.27  Aligned_cols=30  Identities=27%  Similarity=0.416  Sum_probs=25.3

Q ss_pred             eEEEEecCHHHHHHHHHHc---cCCCEEEEEcC
Q 019081          155 TVFILGFGNIGVELAKRLR---PFGVKIIATKR  184 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~---~~G~~V~~~d~  184 (346)
                      +|||=|||+|||.+.+.+.   ..+.+|++++.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd   34 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEecc
Confidence            7999999999999999875   34688888764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.59  E-value=0.1  Score=44.79  Aligned_cols=39  Identities=28%  Similarity=0.392  Sum_probs=34.3

Q ss_pred             cccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ..|.||++.|.|.+ .||+++|+.|...|++|++.+|+..
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35899999999874 6999999999999999999998654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.57  E-value=0.12  Score=42.04  Aligned_cols=32  Identities=28%  Similarity=0.486  Sum_probs=29.1

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      +|.|||.|..|-..|..|+..|+ +|++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            58999999999999999999997 699999754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.54  E-value=0.18  Score=39.52  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=32.6

Q ss_pred             cccCCCeEEEE--ecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          149 ETLLGKTVFIL--GFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       149 ~~l~g~tvgIi--G~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +...++.+.|+  |.|.||-++|..|+.+|++|..+.+..
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            44557788777  889999999999999999999998754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.30  E-value=0.097  Score=44.91  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +|.|||.|..|..+|..|+..|.+|++++++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999865

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.27  E-value=0.19  Score=41.65  Aligned_cols=33  Identities=15%  Similarity=0.212  Sum_probs=29.0

Q ss_pred             eEEEEecCHHHHHHHHHHc--cCCCEEEEEcCCCc
Q 019081          155 TVFILGFGNIGVELAKRLR--PFGVKIIATKRSWA  187 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~--~~G~~V~~~d~~~~  187 (346)
                      +|+|||.|..|-..|..|+  .+|++|++||+...
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            8999999999999999874  57999999998653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.26  E-value=0.13  Score=41.48  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=29.2

Q ss_pred             EEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       156 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      |.|||.|..|...|..|+..|.+|++++++.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            7899999999999999999999999999864

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=89.26  E-value=0.12  Score=44.59  Aligned_cols=39  Identities=31%  Similarity=0.387  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       149 ~~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      ++|.||++.|.|. +.||+++|+.|...|++|++.+|+..
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            4799999999985 67999999999999999999988653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.24  E-value=0.18  Score=44.48  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=28.4

Q ss_pred             CeEEEEecCHHHHHHHHHHcc--CCCEEEEEcCCC
Q 019081          154 KTVFILGFGNIGVELAKRLRP--FGVKIIATKRSW  186 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~--~G~~V~~~d~~~  186 (346)
                      |+|+|||.|..|-.+|..|+.  .+.+|++++++.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            689999999999999988854  446999999874

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.20  E-value=0.17  Score=37.29  Aligned_cols=39  Identities=21%  Similarity=0.304  Sum_probs=32.8

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ..+..||+|.|||.|.-|..+|.-+...+-+++...++.
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            467899999999999999999999998888866554443

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.06  E-value=0.15  Score=41.42  Aligned_cols=31  Identities=23%  Similarity=0.403  Sum_probs=24.5

Q ss_pred             eEEEEecCHHHHHHHHHHcc---CCCEEEEEcCC
Q 019081          155 TVFILGFGNIGVELAKRLRP---FGVKIIATKRS  185 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~---~G~~V~~~d~~  185 (346)
                      +|||=|||+|||.+.|.+..   ..++|++++..
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~   35 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDT   35 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence            79999999999999997653   33677777643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=88.98  E-value=0.13  Score=44.10  Aligned_cols=38  Identities=32%  Similarity=0.385  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.|. +.||+++|+.|...|++|+..+++..
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   41 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD   41 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 56999999999999999999998653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.85  E-value=0.13  Score=44.15  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~G-~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +|.||++.|.|.+ .||+++|+.+...|++|++..++..
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            5899999999988 5999999999999999888766543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.85  E-value=0.12  Score=40.60  Aligned_cols=90  Identities=10%  Similarity=0.044  Sum_probs=49.0

Q ss_pred             CeEEEEec-CHHHHHHHHHHc--cC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEE
Q 019081          154 KTVFILGF-GNIGVELAKRLR--PF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV  229 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~--~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  229 (346)
                      .+|||||. |.+|+++.+.|.  .+ ..++..+..+........              ...........-.+.+.++|++
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~--------------~~~~~~~~~~~~~~~~~~~d~v   68 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG--------------FAESSLRVGDVDSFDFSSVGLA   68 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE--------------ETTEEEECEEGGGCCGGGCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCccee--------------eccccchhccchhhhhccceEE
Confidence            47999987 999999999995  32 346655433221111000              0000000011112345789999


Q ss_pred             EEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                      ++++|.... ..+.    -...+.|..+|+.|.
T Consensus        69 f~a~p~~~s-~~~~----~~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          69 FFAAAAEVS-RAHA----ERARAAGCSVIDLSG   96 (144)
T ss_dssp             EECSCHHHH-HHHH----HHHHHTTCEEEETTC
T ss_pred             EecCCcchh-hhhc----cccccCCceEEeech
Confidence            999984322 1111    112457899999863

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.49  E-value=0.17  Score=43.19  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=32.6

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       151 l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +.||++.|.|. +.||+++|+.+...|++|+..+|+..
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   38 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE   38 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46899999988 55999999999999999999998754

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.29  E-value=0.15  Score=43.87  Aligned_cols=38  Identities=26%  Similarity=0.245  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      +|.||++.|.|. +.||+++|+.|...|++|+..+|+..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            488999988886 68999999999999999999998754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.03  E-value=0.22  Score=41.71  Aligned_cols=33  Identities=27%  Similarity=0.337  Sum_probs=30.1

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCc
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA  187 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~  187 (346)
                      +|.|||.|..|..+|..|+..|. +|.+++++..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            79999999999999999999996 8999998654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.02  E-value=0.14  Score=41.27  Aligned_cols=35  Identities=17%  Similarity=0.108  Sum_probs=31.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +++.|.|||-|..|-..|..++.+|++|+++++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            46789999999999999999999999999998643

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=87.86  E-value=0.74  Score=40.52  Aligned_cols=98  Identities=20%  Similarity=0.198  Sum_probs=59.5

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHH
Q 019081          150 TLLGKTVFILGF---GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE  221 (346)
Q Consensus       150 ~l~g~tvgIiG~---G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e  221 (346)
                      .+.|++|+++|-   +++..+.+..+..|| +++.+..+..-......             .+.....+    ...++++
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~-------------~~~~~~~~~~~~~~~d~~~  217 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYI-------------LDMLDEKGIAWSLHSSIEE  217 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHH-------------HHHHHTTTCCEEEESCGGG
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhc-------------ccccccccceeeeeechhh
Confidence            488999999997   789999999999885 78888765321110000             01111111    2368899


Q ss_pred             HhhcCCEEEEeecCCc----------cccCCCCHHHHccCCCCcEEEEc
Q 019081          222 FASKADVVVCCLSLNK----------QTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       222 ll~~aDiV~~~lPlt~----------~T~~li~~~~l~~mk~gailIN~  260 (346)
                      .++++|+|....--.+          .....++.+.++.+|++++|.-+
T Consensus       218 a~~~aDvvy~~~~~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHc  266 (310)
T d1tuga1         218 VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  266 (310)
T ss_dssp             TTTTCSEEEECCCCGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECC
T ss_pred             hccCCceeeecccchhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeC
Confidence            9999999875321111          01233566666666777666543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.84  E-value=0.49  Score=41.76  Aligned_cols=36  Identities=28%  Similarity=0.283  Sum_probs=31.9

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+++|.|.| .|-||+.+++.|..-|.+|+++|+...
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            577899998 899999999999999999999987543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=87.84  E-value=0.16  Score=40.20  Aligned_cols=32  Identities=34%  Similarity=0.326  Sum_probs=27.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATK  183 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d  183 (346)
                      ++++|.|||.|.+|-.+|..|+.+|.+|.++.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence            46789999999999999999999998765543

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=87.76  E-value=0.084  Score=41.93  Aligned_cols=90  Identities=19%  Similarity=0.187  Sum_probs=50.7

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCC---EEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCE
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGV---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV  228 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  228 (346)
                      |-+|||||. |.+|+++.+.|....+   ++..+..+........              ............++...++|+
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~--------------~~~~~~~~~~~~~~~~~~~d~   66 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK--------------FKDQDITIEETTETAFEGVDI   66 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEE--------------ETTEEEEEEECCTTTTTTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccccc--------------ccCCcccccccchhhhhhhhh
Confidence            458999998 9999999999975543   4444432211110000              000000011223345678999


Q ss_pred             EEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          229 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       229 V~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +++++|.... .    ....+..++|..+|+.|
T Consensus        67 ~f~~~~~~~s-~----~~~~~~~~~~~~VIDlS   94 (154)
T d2gz1a1          67 ALFSAGSSTS-A----KYAPYAVKAGVVVVDNT   94 (154)
T ss_dssp             EEECSCHHHH-H----HHHHHHHHTTCEEEECS
T ss_pred             hhhccCccch-h----hHHhhhccccceehhcC
Confidence            9999884322 1    11223356799999987

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.74  E-value=0.22  Score=39.50  Aligned_cols=37  Identities=19%  Similarity=0.390  Sum_probs=31.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH
Confidence            57899999999999999999999997 57777765443

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=87.63  E-value=0.48  Score=38.96  Aligned_cols=99  Identities=12%  Similarity=0.022  Sum_probs=63.6

Q ss_pred             HHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-C-cCCHHHHhhcCCEEEEeecCCccccCCCC
Q 019081          167 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C-HEDIFEFASKADVVVCCLSLNKQTAGIVN  244 (346)
Q Consensus       167 ~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~ell~~aDiV~~~lPlt~~T~~li~  244 (346)
                      ..++++...|++|++=.-.....        +|      .++.....+ . ..+.++++ +||+|+..-|.++       
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a--------~f------sD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~-------   78 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGA--------GF------ADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP-------   78 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGG--------TC------CHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG-------
T ss_pred             HHHHHHHHCCCEEEEEcCccccc--------CC------CHHHHHhhcceeeecccccc-ccceEEEeccCCH-------
Confidence            45677888999999732111110        00      011112222 2 24556666 5899877665443       


Q ss_pred             HHHHccCCCCcEEEEcCCCCCCCHHHHHHHHHhCCCeEEEEecCCC
Q 019081          245 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT  290 (346)
Q Consensus       245 ~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~  290 (346)
                       +.++.||+|+++|-.-..  ....+++++|.+.+|...++|....
T Consensus        79 -~e~~~lk~~~~li~~l~p--~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          79 -AEYDLMQKDQLLFTYLHL--AAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             -GGGGGCCTTCEEEECCCG--GGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             -HHHHhhhcCceEEEecCc--ccchHHHHHHHHcCCEEEEeeeccc
Confidence             467889999999987543  4467899999999999888887633

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=87.61  E-value=0.21  Score=40.22  Aligned_cols=31  Identities=29%  Similarity=0.383  Sum_probs=26.1

Q ss_pred             eEEEEecCHHHHHHHHHHccC-CCEEEEEcCC
Q 019081          155 TVFILGFGNIGVELAKRLRPF-GVKIIATKRS  185 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~-G~~V~~~d~~  185 (346)
                      +|||=|||+|||.+.+.+... .++|++++..
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            799999999999999987654 6788888753

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=87.54  E-value=0.21  Score=40.46  Aligned_cols=106  Identities=14%  Similarity=0.124  Sum_probs=55.0

Q ss_pred             eEEEEecCHHHHHHHHHHcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccC-CcCCHHHHhhcCCEE
Q 019081          155 TVFILGFGNIGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV  229 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~----~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV  229 (346)
                      +|||=|||+|||.+.+.+..    -.++|++.+.....  ........           .+... .+.  .++-.+.|.+
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~--~~~ayLlk-----------yDS~hG~~~--~~v~~~~~~l   67 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDP--KTNAHLTR-----------YDTAHGKFP--GTVSVNGSYM   67 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCH--HHHHHHHH-----------EETTTEECS--SCEEEETTEE
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCCh--HHHHHhhc-----------ccccCCCcC--ceEEeccceE
Confidence            79999999999999998742    35678777653211  10000000           11111 110  0111234544


Q ss_pred             EEeecCCccccCCCCHHHHccCC---CCcEEEEcCCCCCCCHHHHHHHHHhCC
Q 019081          230 VCCLSLNKQTAGIVNKSFLSSMK---KGSLLVNIARGGLLDYEAIAHYLECGH  279 (346)
Q Consensus       230 ~~~lPlt~~T~~li~~~~l~~mk---~gailIN~sRg~~vd~~aL~~aL~~g~  279 (346)
                      ++    +.....++.....+.++   -|.=+|=-+.|.--+.+.+..-|+.|-
T Consensus        68 ~i----~g~~i~i~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~Ga  116 (173)
T d1obfo1          68 VV----NGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGA  116 (173)
T ss_dssp             EE----TTEEEEEECCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTC
T ss_pred             EE----CCEEEEEEecCCHHHCcccccccceEEEecccccCHHHHHHHhccCC
Confidence            43    33344444443333333   244344444677677778888888874

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=87.53  E-value=0.21  Score=40.82  Aligned_cols=31  Identities=19%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      -|.|||.|..|...|..++.+|.+|..+++.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            3789999999999999999999999999864

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=87.51  E-value=0.19  Score=42.42  Aligned_cols=32  Identities=19%  Similarity=0.144  Sum_probs=29.6

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      -|.|||.|-+|..+|..|...|.+|+++|+..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999854

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.31  E-value=0.22  Score=42.38  Aligned_cols=38  Identities=29%  Similarity=0.306  Sum_probs=33.0

Q ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       150 ~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.||++.|.| -+.||+++|+.|...|++|++.+|+..
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~   41 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES   41 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            38999987776 468999999999999999999998754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.15  E-value=0.25  Score=38.74  Aligned_cols=32  Identities=25%  Similarity=0.312  Sum_probs=27.9

Q ss_pred             eEEEEec-CHHHHHHHHHHccCCC--EEEEEcCCC
Q 019081          155 TVFILGF-GNIGVELAKRLRPFGV--KIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~  186 (346)
                      +|+|||. |.+|+.+|..+...|.  ++..+|+..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            7999995 9999999999987774  899999764

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=87.14  E-value=1.5  Score=35.16  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=55.2

Q ss_pred             CeEEEEec-CHHHHHHHHHHccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhcCCEEEE
Q 019081          154 KTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC  231 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~~  231 (346)
                      -+|||+|. |.+|+++.++|... .+++.....+...... .    ...+++..   ...........++.+..+|++++
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~-~----~~~~~~~~---~~~~~~~~~~~~~~~~~~Dvvf~   77 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQ-F----GSVFPHLI---TQDLPNLVAVKDADFSNVDAVFC   77 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSC-H----HHHCGGGT---TSCCCCCBCGGGCCGGGCSEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCc-c----cccccccc---ccccccchhhhhhhhcccceeee
Confidence            47999995 99999999999864 4566554322111100 0    00000000   00000011233456788999999


Q ss_pred             eecCCccccCCCCHHHHccCCCCcEEEEcCCCCCCCHHH
Q 019081          232 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEA  270 (346)
Q Consensus       232 ~lPlt~~T~~li~~~~l~~mk~gailIN~sRg~~vd~~a  270 (346)
                      ++|...      ..+....+.+....|..+-+.-....+
T Consensus        78 alp~~~------s~~~~~~l~~~~~~v~~~~~~~~~~~~  110 (183)
T d2cvoa1          78 CLPHGT------TQEIIKGLPQELKIVDLSADFRLRDIN  110 (183)
T ss_dssp             CCSSSH------HHHHHHTSCSSCEEEECSSTTTCSCHH
T ss_pred             ccccch------HHHHHHHHHhcCcccccchhhhccccc
Confidence            998542      344445555555666665555444333

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.13  E-value=0.23  Score=41.30  Aligned_cols=36  Identities=14%  Similarity=0.273  Sum_probs=30.7

Q ss_pred             CCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       153 g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      +|++.|.|. +.||+++|+.|...|++|++.+++...
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            467777776 789999999999999999999987543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=86.86  E-value=0.24  Score=43.66  Aligned_cols=78  Identities=17%  Similarity=0.074  Sum_probs=48.6

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccc-cCC-cCCHHHHhhcCCEE
Q 019081          153 GKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGC-HEDIFEFASKADVV  229 (346)
Q Consensus       153 g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~l~ell~~aDiV  229 (346)
                      .|||.|+| .|.||+.+++.|...|++|++..|+..+.......  .   ..+  .+.... ... ...++.++..+|.+
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~--~---~~~--v~~~~gD~~d~~~~~~~a~~~~~~~   75 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQ--A---IPN--VTLFQGPLLNNVPLMDTLFEGAHLA   75 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHH--T---STT--EEEEESCCTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhc--c---cCC--CEEEEeeCCCcHHHHHHHhcCCceE
Confidence            58999999 59999999999999999999998865442110000  0   000  011100 001 12356778889998


Q ss_pred             EEeecCCc
Q 019081          230 VCCLSLNK  237 (346)
Q Consensus       230 ~~~lPlt~  237 (346)
                      ++..+...
T Consensus        76 ~~~~~~~~   83 (350)
T d1xgka_          76 FINTTSQA   83 (350)
T ss_dssp             EECCCSTT
T ss_pred             Eeeccccc
Confidence            88776543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=86.78  E-value=0.21  Score=44.09  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=30.7

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .||+|.|.|. |-||+.+++.|...|++|++..|+.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~   45 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSA   45 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCc
Confidence            5999999985 6699999999998999999987754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.75  E-value=0.58  Score=37.94  Aligned_cols=33  Identities=33%  Similarity=0.400  Sum_probs=27.5

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCC--EEEEEcCCC
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSW  186 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~  186 (346)
                      |+|.|+|. |.||+.+++.|...|.  +|+...|+.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~   38 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   38 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            79999998 9999999999988887  666665543

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.65  E-value=1  Score=37.43  Aligned_cols=40  Identities=28%  Similarity=0.334  Sum_probs=32.8

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHcc--------------------CCC-EEEEEcCCCc
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRP--------------------FGV-KIIATKRSWA  187 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~--------------------~G~-~V~~~d~~~~  187 (346)
                      ...+.|++|.|||-|+++--+|+.|..                    .|. +|..+.|+..
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            456789999999999999999998876                    466 5888877543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.33  E-value=0.23  Score=40.25  Aligned_cols=40  Identities=23%  Similarity=0.186  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCCcc
Q 019081          149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS  188 (346)
Q Consensus       149 ~~l~g~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~  188 (346)
                      ..-.|++|.|.| .|.+|....+.++.+|++|++..++..+
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k   68 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE   68 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH
Confidence            445688999999 6999999999999999999998876544

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=85.96  E-value=0.25  Score=39.87  Aligned_cols=30  Identities=30%  Similarity=0.345  Sum_probs=24.7

Q ss_pred             eEEEEecCHHHHHHHHHHcc-CCCEEEEEcC
Q 019081          155 TVFILGFGNIGVELAKRLRP-FGVKIIATKR  184 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~-~G~~V~~~d~  184 (346)
                      +|||=|||+|||.+.+.+.. -..+|++.+.
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            79999999999999997763 3578887754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.82  E-value=0.31  Score=42.41  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .+.|||.|-.|..+|..|+..|.+|++++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            578999999999999999999999999997643

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.82  E-value=0.36  Score=36.99  Aligned_cols=35  Identities=34%  Similarity=0.443  Sum_probs=29.3

Q ss_pred             CCeEEEEecCHHHHHHHHHH----ccCCCEEEEEcCCCc
Q 019081          153 GKTVFILGFGNIGVELAKRL----RPFGVKIIATKRSWA  187 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l----~~~G~~V~~~d~~~~  187 (346)
                      ++++.|||.|.+|-++|..+    +.+|.+|+.+++...
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            56999999999999998766    468999999887543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.81  E-value=0.27  Score=43.05  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ....|.|||.|..|..+|..|+..|.+|+++++..
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            45579999999999999999999999999999754

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.75  E-value=0.27  Score=37.52  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=25.8

Q ss_pred             eEEEEecCHHHHHHHHHHc-cCCCEEEE-EcCCCc
Q 019081          155 TVFILGFGNIGVELAKRLR-PFGVKIIA-TKRSWA  187 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~-~~G~~V~~-~d~~~~  187 (346)
                      +|.|+|+|.+|+++++.+. .-|+++++ +|..+.
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            7999999999999998664 46888766 465443

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=85.73  E-value=2  Score=37.47  Aligned_cols=139  Identities=16%  Similarity=0.205  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccccCCCeEEEEecCHHHHHHHHHHccC----CC-------EEEEEcC
Q 019081          116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR  184 (346)
Q Consensus       116 vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~----G~-------~V~~~d~  184 (346)
                      +|=-+++.+|+.+|-.                +.+|.+.++.|.|.|.-|-.+|+.+...    |+       +++.+|+
T Consensus         4 TaaV~lAglinAlki~----------------gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~   67 (298)
T d1gq2a1           4 TASVAVAGLLAALRIT----------------KNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDS   67 (298)
T ss_dssp             HHHHHHHHHHHHHHHH----------------TSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEET
T ss_pred             HHHHHHHHHHHHHHHh----------------CCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeC
Confidence            4545666777766632                5789999999999999999999988643    32       6888887


Q ss_pred             CCccccccccccchhhhccccccccccccCCcCCHHHHhhc--CCEEEEeecCCccccCCCCHHHHc---cCCCCcEEEE
Q 019081          185 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTAGIVNKSFLS---SMKKGSLLVN  259 (346)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~~~lPlt~~T~~li~~~~l~---~mk~gailIN  259 (346)
                      ..--... +....  +.+    ..+........++.++++.  .++++-..    ...++++++.++   .|.+..++.=
T Consensus        68 kGlv~~~-R~~l~--~~k----~~~a~~~~~~~~l~~~i~~vkptvliG~s----~~~g~ft~evv~~ma~~~~~PIIFa  136 (298)
T d1gq2a1          68 KGLIVKG-RASLT--PEK----EHFAHEHCEMKNLEDIVKDIKPTVLIGVA----AIGGAFTQQILQDMAAFNKRPIIFA  136 (298)
T ss_dssp             TEECBTT-CSSCC--TTG----GGGCBSCCCCCCHHHHHHHHCCSEEEECS----CCTTCSCHHHHHHHHHHCSSCEEEE
T ss_pred             CCcccCC-CcccC--HHH----HHHHHHhhhhhhhHHHhhccChheeEecc----cccCcCCHHHHHHHHhhCCCCEEEE
Confidence            5421100 00000  000    1112111234577777754  56666642    234788888776   5679999999


Q ss_pred             cCCCCCC---CHHHHHHHHHhCCCe
Q 019081          260 IARGGLL---DYEAIAHYLECGHLG  281 (346)
Q Consensus       260 ~sRg~~v---d~~aL~~aL~~g~i~  281 (346)
                      .|....-   +.++.++.-+.+-|.
T Consensus       137 LSNPt~~~E~~~~~a~~wt~G~ai~  161 (298)
T d1gq2a1         137 LSNPTSKAECTAEQLYKYTEGRGIF  161 (298)
T ss_dssp             CCSSGGGCSSCHHHHHHHTTTCCEE
T ss_pred             ccCCCCcCCCCHHHHhhhcccceEE
Confidence            9977543   445555554444443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.64  E-value=0.33  Score=38.31  Aligned_cols=32  Identities=22%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      -|.|||.|.+|-..|..++.+|++|+.++++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence            37899999999999999999999999998753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.62  E-value=0.42  Score=37.84  Aligned_cols=38  Identities=24%  Similarity=0.359  Sum_probs=32.0

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCcc
Q 019081          151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS  188 (346)
Q Consensus       151 l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  188 (346)
                      -.|.+|.|+|.|.+|...+..++.+|. +|++.|++..+
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            367899999999999999999988777 68888876543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.61  E-value=0.16  Score=47.09  Aligned_cols=101  Identities=20%  Similarity=0.256  Sum_probs=59.1

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchhhhc---ccc---cccccccc---------
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVK---NGI---IDDLVDEK---------  213 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~---------  213 (346)
                      .|++++|.|||+|.+|..+++.|...|. ++..+|...-....-.++ .-|...   ...   +.+.....         
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQ-flf~~~diG~~Ka~~a~~~l~~~np~v~i~~~  112 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQ-FLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH  112 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTC-TTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccc-ccCChhHcCcHHHHHHHHHHHhhCCCCceEee
Confidence            3688899999999999999999998888 688888644221110000 000000   000   00000000         


Q ss_pred             -CC-cCCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCC
Q 019081          214 -GC-HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK  252 (346)
Q Consensus       214 -~~-~~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk  252 (346)
                       .. ....++++.++|+|+.++- +.+++..++...+...|
T Consensus       113 ~~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         113 FNKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CSCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             eccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence             00 1123577899999988875 55677788877665444

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.52  E-value=0.49  Score=36.68  Aligned_cols=32  Identities=31%  Similarity=0.403  Sum_probs=27.8

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      .+|.|||.|.+|-.+|..|+. +.+|..+++..
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            378999999999999999976 77999998754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.48  E-value=0.2  Score=40.46  Aligned_cols=35  Identities=14%  Similarity=0.017  Sum_probs=31.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      ..++|.|||.|..|-..|..|+.+|++|+++++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            45789999999999999999999999999998654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=85.37  E-value=0.27  Score=34.34  Aligned_cols=36  Identities=17%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|.+|.|.|. |.+|....+.++.+|++|++..++.+
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~   67 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence            5778989877 99999999999999999999877543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.31  E-value=0.64  Score=34.46  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=27.4

Q ss_pred             CCeEEEEecCHHHHHHHHHHccC---CCEEEEEcCCC
Q 019081          153 GKTVFILGFGNIGVELAKRLRPF---GVKIIATKRSW  186 (346)
Q Consensus       153 g~tvgIiG~G~IG~~vA~~l~~~---G~~V~~~d~~~  186 (346)
                      .+++.|||.|.+|-++|..+..+   |.+|..+++..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            46899999999999999766555   55799888754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=85.13  E-value=0.32  Score=41.44  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=27.6

Q ss_pred             CeEE-EEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVF-ILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvg-IiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      |+|. |.|. +.||+++|+.|...|++|++.+|+..
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4554 4465 46999999999999999999998754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.06  E-value=0.059  Score=44.05  Aligned_cols=95  Identities=14%  Similarity=0.163  Sum_probs=57.3

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHhhc----
Q 019081          152 LGKTVFILG-FGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK----  225 (346)
Q Consensus       152 ~g~tvgIiG-~G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----  225 (346)
                      .+++|.|.| .|.+|...++.++.+|++ |++.+.+.++....... .+       .+...+  ....++.+.+++    
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~-~g-------ad~vi~--~~~~~~~~~~~~~~~~   99 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSE-LG-------FDAAVN--YKTGNVAEQLREACPG   99 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHH-SC-------CSEEEE--TTSSCHHHHHHHHCTT
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhc-cc-------ceEEee--ccchhHHHHHHHHhcc
Confidence            357899999 599999999999999996 55555443221000000 00       000111  123456666655    


Q ss_pred             -CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCC
Q 019081          226 -ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       226 -aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sR  262 (346)
                       .|+|+-++-.  +    .-...++.++++..++.++.
T Consensus       100 GvDvv~D~vGg--~----~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         100 GVDVYFDNVGG--D----ISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             CEEEEEESSCH--H----HHHHHHTTEEEEEEEEEC--
T ss_pred             CceEEEecCCc--h----hHHHHhhhccccccEEEecc
Confidence             8888877741  1    13567888999999998863

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.06  E-value=0.12  Score=49.42  Aligned_cols=44  Identities=20%  Similarity=0.206  Sum_probs=36.5

Q ss_pred             cCCCCccccCCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       143 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      |+......|..++|.|||+|.+|..+|+.|.-.|. +++.+|...
T Consensus        15 wG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          15 WGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             hhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            55444467899999999999999999999988887 688888644

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=85.05  E-value=0.26  Score=40.16  Aligned_cols=31  Identities=26%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      -|.|||.|..|...|..++.+|.+|+++++.
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            4789999999999999999999999999865

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=84.74  E-value=0.31  Score=41.84  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=28.8

Q ss_pred             eEEEEecCHHHHHHHHHHccCCC-EEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~  186 (346)
                      .|.|||.|-+|.++|..|...|. +|+++|+..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58999999999999999998897 599999864

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=84.69  E-value=0.35  Score=40.15  Aligned_cols=32  Identities=19%  Similarity=0.260  Sum_probs=29.3

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      -|.|||.|..|...|..|+..|++|+++++..
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            37899999999999999999999999999764

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.64  E-value=0.35  Score=39.61  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=29.2

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      -|.|||.|..|...|..+...|++|+.++...
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            47899999999999999999999999999653

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.64  E-value=0.37  Score=38.70  Aligned_cols=30  Identities=23%  Similarity=0.326  Sum_probs=25.2

Q ss_pred             eEEEEecCHHHHHHHHHHcc-CCCEEEEEcC
Q 019081          155 TVFILGFGNIGVELAKRLRP-FGVKIIATKR  184 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~-~G~~V~~~d~  184 (346)
                      +|||=|||+|||.+.+.+.. -..+|++.+.
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd   32 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECC
Confidence            79999999999999998864 3678888764

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=84.00  E-value=0.44  Score=37.11  Aligned_cols=100  Identities=14%  Similarity=0.193  Sum_probs=55.7

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCCC--EEEEEcCCCccccc-cccccchhhhccccccccccccC--CcCCHHHHhhcCC
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFGV--KIIATKRSWASHSQ-VSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD  227 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD  227 (346)
                      .+|+||| .|.+|+.+|-.+...|.  ++..+|........ ....+..+..       .+....  ...+. +.++.||
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~-------~~~~~~~i~~~~~-~~~~~aD   72 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI-------AYDSNTRVRQGGY-EDTAGSD   72 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH-------TTTCCCEEEECCG-GGGTTCS
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcc-------cccCCceEeeCCH-HHhhhcC
Confidence            4899999 69999999998876555  79999964321100 0000000000       000000  11233 3468999


Q ss_pred             EEEEeecCCccccCCC-------C-------HHHHccCCCCcEEEEcCC
Q 019081          228 VVVCCLSLNKQTAGIV-------N-------KSFLSSMKKGSLLVNIAR  262 (346)
Q Consensus       228 iV~~~lPlt~~T~~li-------~-------~~~l~~mk~gailIN~sR  262 (346)
                      +|+++.-. +...++-       |       .+.+....|++++|.++.
T Consensus        73 iVvitaG~-~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          73 VVVITAGI-PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             EEEECCCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             EEEEeccc-ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            99987542 3333331       1       124556678899998854

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=83.99  E-value=0.45  Score=38.35  Aligned_cols=30  Identities=27%  Similarity=0.408  Sum_probs=25.2

Q ss_pred             eEEEEecCHHHHHHHHHHcc-CCCEEEEEcC
Q 019081          155 TVFILGFGNIGVELAKRLRP-FGVKIIATKR  184 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~-~G~~V~~~d~  184 (346)
                      +|||=|||+|||.+.+.+.. -..+|.+.+.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd   33 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcC
Confidence            79999999999999998864 3678888764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=83.89  E-value=0.27  Score=39.16  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=30.9

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      .|++|.|.|. |.+|..+++.++.+|++|++.+++..
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~   64 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ   64 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchH
Confidence            4789999955 45999999999999999999988654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=83.60  E-value=0.39  Score=40.67  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=29.4

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      -|.|||.|-+|..+|..|+..|.+|+++|+..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38899999999999999999999999999753

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.51  E-value=1.7  Score=35.61  Aligned_cols=39  Identities=26%  Similarity=0.533  Sum_probs=31.5

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHc--------------------cCCC-EEEEEcCCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLR--------------------PFGV-KIIATKRSW  186 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~--------------------~~G~-~V~~~d~~~  186 (346)
                      ...+.|++|.|||-|+++--+|+.|.                    ..|. +|..+-|+.
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            35678999999999999999999775                    5677 487776654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.47  E-value=0.37  Score=41.33  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=28.8

Q ss_pred             EEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          156 VFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       156 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      |.|||.|..|-..|..|+..|.+|++++++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.40  E-value=0.45  Score=39.84  Aligned_cols=34  Identities=26%  Similarity=0.299  Sum_probs=28.2

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      |.+.|.|. +.||+++|+.|...|++|++.|++..
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            45566675 66999999999999999999998654

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.11  E-value=0.51  Score=40.62  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=29.6

Q ss_pred             CeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      |+|.|.|. |-||+.+++.|...|++|+++++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            67888875 88999999999988999999998654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.02  E-value=1.1  Score=33.79  Aligned_cols=39  Identities=26%  Similarity=0.218  Sum_probs=34.5

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       148 ~~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      +.-.+||+|.|||.|..+-..|..|..+.-+|+.+-|+.
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            445689999999999999999999999999999987654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.00  E-value=0.53  Score=38.72  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             eEEEEecCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       155 tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      -|.|||.|..|...|..++.+|++|.+++...
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            47899999999999999999999999999643

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.95  E-value=0.41  Score=40.99  Aligned_cols=37  Identities=24%  Similarity=0.397  Sum_probs=31.9

Q ss_pred             CCCeEEEE--ecCHHHHHHHHHHcc-CCCEEEEEcCCCcc
Q 019081          152 LGKTVFIL--GFGNIGVELAKRLRP-FGVKIIATKRSWAS  188 (346)
Q Consensus       152 ~g~tvgIi--G~G~IG~~vA~~l~~-~G~~V~~~d~~~~~  188 (346)
                      +||+|.||  |-+.||+++|+.|.. .|.+|+.++|+..+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            58999998  888999999999876 59999999997654

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.91  E-value=0.29  Score=45.08  Aligned_cols=106  Identities=17%  Similarity=0.182  Sum_probs=59.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCC-EEEEEcCCCccccccccccchh-------hhccccccccccccC--CcCCHHH
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSAL-------AVKNGIIDDLVDEKG--CHEDIFE  221 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~l~e  221 (346)
                      .|.++.=||+|. |+.+...++.+|+ +|+|+|.+.............+       ....+. ........  .....++
T Consensus       216 pgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~-~~~~~~~~f~~~~~~d~  293 (406)
T d1u2za_         216 KGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN-VEFSLKKSFVDNNRVAE  293 (406)
T ss_dssp             TTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC-EEEEESSCSTTCHHHHH
T ss_pred             CCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc-ceeeeeechhhcccccc
Confidence            578999999995 6666677777777 7999998753211110000000       000000 00000000  1234667


Q ss_pred             HhhcCCEEEEeecC-CccccCCCCHHHHccCCCCcEEEEc
Q 019081          222 FASKADVVVCCLSL-NKQTAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       222 ll~~aDiV~~~lPl-t~~T~~li~~~~l~~mk~gailIN~  260 (346)
                      .+..||+|.++.-. .++....+ .+.+..||||+.||-.
T Consensus       294 ~~~~adVV~inn~~f~~~l~~~L-~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         294 LIPQCDVILVNNFLFDEDLNKKV-EKILQTAKVGCKIISL  332 (406)
T ss_dssp             HGGGCSEEEECCTTCCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             ccccceEEEEecccCchHHHHHH-HHHHHhcCCCcEEEEe
Confidence            88999999885322 23323333 4678899999999864

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.73  E-value=0.45  Score=37.34  Aligned_cols=73  Identities=15%  Similarity=0.078  Sum_probs=41.8

Q ss_pred             eEEEEe-cCHHHHHHHHHHcc---CCC----EEEEEcCCCccccccccccchhhhcccccccccc---ccCCcCCHHHHh
Q 019081          155 TVFILG-FGNIGVELAKRLRP---FGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKGCHEDIFEFA  223 (346)
Q Consensus       155 tvgIiG-~G~IG~~vA~~l~~---~G~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~ell  223 (346)
                      +|.||| .|.+|..+|-.|..   ||.    .+..+|..........     ......  +....   ......+..+.+
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~-----l~~~~~--~~~~~~~~~~~~~~~~~~~~   77 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDG-----VLMELQ--DCALPLLKDVIATDKEEIAF   77 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHH-----HHHHHH--HTCCTTEEEEEEESCHHHHT
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhh-----hhhhhc--ccccccccccccCccccccc
Confidence            899999 59999999998864   232    4667776432211000     000000  00000   001235778999


Q ss_pred             hcCCEEEEeec
Q 019081          224 SKADVVVCCLS  234 (346)
Q Consensus       224 ~~aDiV~~~lP  234 (346)
                      ++||+|++..-
T Consensus        78 ~~~dvVVitag   88 (154)
T d5mdha1          78 KDLDVAILVGS   88 (154)
T ss_dssp             TTCSEEEECCS
T ss_pred             CCceEEEEecc
Confidence            99999999763

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.30  E-value=0.32  Score=39.93  Aligned_cols=33  Identities=15%  Similarity=-0.019  Sum_probs=28.7

Q ss_pred             CeEEEEecCHHHHHHHHHHccCC-------CEEEEEcCCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSW  186 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G-------~~V~~~d~~~  186 (346)
                      .+|+|||.|.-|-..|..|...|       ++|.+|++..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            48999999999999999887655       6899999865

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=81.98  E-value=0.71  Score=37.20  Aligned_cols=102  Identities=12%  Similarity=0.066  Sum_probs=61.0

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CcCCHHHHh
Q 019081          150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA  223 (346)
Q Consensus       150 ~l~g~tvgIiG~G--~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell  223 (346)
                      .+.|.+|++||=|  ++..+++..+..||+++...-|..-........   .      +.......+    ...++++.+
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~---~------~~~~~~~~g~~~~~~~d~~~a~   72 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVT---E------CRALAQQNGGNITLTEDVAKGV   72 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHH---H------HHHHHHHTTCEEEEESCHHHHH
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHH---H------HHHHHHhcCCceEEEechhhcc
Confidence            5778999999955  799999999999999999887632111100000   0      000111111    246899999


Q ss_pred             hcCCEEEEeecCCcc--------------ccCCCCHHHHccCCCCcEEEEc
Q 019081          224 SKADVVVCCLSLNKQ--------------TAGIVNKSFLSSMKKGSLLVNI  260 (346)
Q Consensus       224 ~~aDiV~~~lPlt~~--------------T~~li~~~~l~~mk~gailIN~  260 (346)
                      +.+|+|..-.=....              ....++.......+++++|.-+
T Consensus        73 ~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~  123 (183)
T d1duvg2          73 EGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHC  123 (183)
T ss_dssp             TTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEEC
T ss_pred             ccCCEEEEEehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEcc
Confidence            999999764321100              1123344445556777777766

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.76  E-value=0.39  Score=39.28  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             CeEEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081          154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       154 ~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      ..|.|||.|..|...|..++.+|.+|+.+++.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            35889999999999999999999999999864

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=81.50  E-value=0.53  Score=37.61  Aligned_cols=96  Identities=17%  Similarity=0.105  Sum_probs=59.6

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCcCCHHHHh-----hc
Q 019081          152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-----SK  225 (346)
Q Consensus       152 ~g~tvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~  225 (346)
                      .|++|.|.|. |.+|...++.++..|++|++..++..+.... .. .+       .+..+.. ......+.++     ..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~-~~-~G-------a~~vi~~-~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQ-IG-------FDAAFNY-KTVNSLEEALKKASPDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HH-TT-------CSEEEET-TSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHH-Hh-hh-------hhhhccc-ccccHHHHHHHHhhcCC
Confidence            5889999998 7799999999999999999998764321000 00 00       0011111 0112223332     33


Q ss_pred             CCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcCCC
Q 019081          226 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG  263 (346)
Q Consensus       226 aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~sRg  263 (346)
                      .|+|+-++.  .++    -.+.++.++++..++.++..
T Consensus        99 vd~v~D~vG--~~~----~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2          99 YDCYFDNVG--GEF----LNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             EEEEEESSC--HHH----HHHHGGGEEEEEEEEECCCG
T ss_pred             CceeEEecC--chh----hhhhhhhccCCCeEEeecce
Confidence            788888774  221    24678889999999998643

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.44  E-value=1.4  Score=34.31  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=28.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHccCCCE-EEEEcCC
Q 019081          152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS  185 (346)
Q Consensus       152 ~g~tvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~~  185 (346)
                      .+++|.|||-|.+|-.+|..+..+|++ |+.+-|+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            567899999999999999999999986 6666554

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=81.39  E-value=1.9  Score=38.88  Aligned_cols=111  Identities=14%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHccCCCEEEEEcCCCccccccccc---------cchhhhccccccccccccC---Cc
Q 019081          149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---------SSALAVKNGIIDDLVDEKG---CH  216 (346)
Q Consensus       149 ~~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~  216 (346)
                      +.|.|-+|.=++-...|-..++.|..+|++|+=+++.....  ..+.         +..|...+.-.....-...   ..
T Consensus         2 ~PL~GirVld~~~~~agp~~~~~LadlGAeVIkvE~p~~gd--~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~   79 (427)
T d2vjma1           2 KPLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGD--MTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGK   79 (427)
T ss_dssp             CTTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCS--GGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHH
T ss_pred             CCCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCC--cccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHH
Confidence            46899999988888888888999999999999998642110  0010         0011110000000000000   01


Q ss_pred             CCHHHHhhcCCEEEEeecCCccccCCCCHHHHccCCCCcEEEEcC
Q 019081          217 EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA  261 (346)
Q Consensus       217 ~~l~ell~~aDiV~~~lPlt~~T~~li~~~~l~~mk~gailIN~s  261 (346)
                      +-+.+|+++||||+-..+...--+-=++.+.++..+|.-|...++
T Consensus        80 ~~~~~Lv~~aDv~i~n~~pg~~~rlGL~~~~l~~~NP~LI~~sis  124 (427)
T d2vjma1          80 ELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK  124 (427)
T ss_dssp             HHHHHHHHHCSEEEECCSTTHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHHHHhCCeeeECCCcchHHHcCCCchhhhhhCCccceeeee
Confidence            347899999999998876433333346899999999999988884

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.91  E-value=0.63  Score=40.53  Aligned_cols=34  Identities=29%  Similarity=0.321  Sum_probs=28.1

Q ss_pred             CeE-EEEe-cCHHHHHHHHHHccCCCEEEEEcCCCc
Q 019081          154 KTV-FILG-FGNIGVELAKRLRPFGVKIIATKRSWA  187 (346)
Q Consensus       154 ~tv-gIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~  187 (346)
                      |+| .|.| .|-||+.+++.|...|++|+++||...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            567 4555 578999999999999999999998643

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.64  E-value=0.54  Score=38.17  Aligned_cols=30  Identities=20%  Similarity=0.398  Sum_probs=28.0

Q ss_pred             EEEEecCHHHHHHHHHHccCCCEEEEEcCC
Q 019081          156 VFILGFGNIGVELAKRLRPFGVKIIATKRS  185 (346)
Q Consensus       156 vgIiG~G~IG~~vA~~l~~~G~~V~~~d~~  185 (346)
                      |.|||.|..|...|..++.+|.+|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999864

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.62  E-value=0.45  Score=37.09  Aligned_cols=30  Identities=33%  Similarity=0.485  Sum_probs=26.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHccCCCEE
Q 019081          150 TLLGKTVFILGFGNIGVELAKRLRPFGVKI  179 (346)
Q Consensus       150 ~l~g~tvgIiG~G~IG~~vA~~l~~~G~~V  179 (346)
                      .-.||+|.|||.|.+|..+|..+..+|.++
T Consensus        26 ~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          26 APVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            345899999999999999999999999864

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=80.27  E-value=0.64  Score=41.14  Aligned_cols=33  Identities=33%  Similarity=0.333  Sum_probs=28.4

Q ss_pred             CeEEEEe-cCHHHHHHHHHHccCCCEEEEEcCCC
Q 019081          154 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW  186 (346)
Q Consensus       154 ~tvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~  186 (346)
                      |.|.|.| .|-||+.+++.|...|++|+++||..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5677888 89999999999999999999999854

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.21  E-value=0.3  Score=38.41  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=18.6

Q ss_pred             CeEEEEec-CHHHHHHHHHHcc
Q 019081          154 KTVFILGF-GNIGVELAKRLRP  174 (346)
Q Consensus       154 ~tvgIiG~-G~IG~~vA~~l~~  174 (346)
                      .+|.|+|. |.+|+.+|-.+..
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~   26 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAA   26 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCHHHHHHHHHHHh
Confidence            38999996 9999999998875