Citrus Sinensis ID: 019094

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
MAMEMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRLM
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccEEEHHHHHHHHHHHHHEEEEEEccccccEEEcccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHEEEEEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEEc
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHEEEEccc
mamemqknsmyieqndpegdirkdfldddgrakrtgtwVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTllsdcyrspdpvtgkrnytYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVkrsncfhrhghhvkcytsnnplMIIFACIQIVLSqipnfhklSWLSILAAVMSFAYSSIGIGLSIAKvigdgphattltgttvgvdvsASEKVWRAFQAIGDVAFAYAFSTVLVEIQDtlkssppenksmkratAVGVTTTTLFYIMCGVMgylafgndapgnfltgfgfyepfwlvDFANACIAVHLIGAYQVNSRLM
mamemqknsmyieqndpegdIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLkssppenksmkratavgVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRLM
MAMEMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAttltgttvgvDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRLM
********************************KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQD***************TAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQV*****
************************************TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDT*********SMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRLM
********SMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRLM
*******************************AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRLM
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiii
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MAMEMQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRLM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query346 2.2.26 [Sep-21-2011]
P92934 481 Amino acid permease 6 OS= yes no 0.968 0.696 0.803 1e-157
Q42400 485 Amino acid permease 1 OS= no no 0.930 0.663 0.730 1e-145
O80592 475 Amino acid permease 8 OS= no no 0.953 0.694 0.712 1e-140
Q38967 493 Amino acid permease 2 OS= no no 0.919 0.645 0.630 1e-121
Q39134 476 Amino acid permease 3 OS= no no 0.916 0.665 0.628 1e-120
Q9FN04 466 Amino acid permease 4 OS= no no 0.919 0.682 0.626 1e-120
Q8GUM3 480 Amino acid permease 5 OS= no no 0.953 0.687 0.554 1e-109
Q9FF99 467 Probable amino acid perme no no 0.956 0.708 0.508 6e-89
Q9FKS8 446 Lysine histidine transpor no no 0.829 0.643 0.327 4e-32
Q9LRB5 441 Lysine histidine transpor no no 0.841 0.659 0.318 4e-32
>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1 Back     alignment and function desciption
 Score =  554 bits (1427), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 274/341 (80%), Positives = 307/341 (90%), Gaps = 6/341 (1%)

Query: 6   QKNSMYIEQNDPE---GDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIA 62
           +K SM++EQ+ PE   GD  K+F D+DGR KRTGTW+T SAHIITAVIGSGVLSLAWAIA
Sbjct: 3   KKKSMFVEQSFPEHEIGDTNKNF-DEDGRDKRTGTWMTGSAHIITAVIGSGVLSLAWAIA 61

Query: 63  QLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCG 122
           QLGWVAGPAVLMAFSFITY+TST+L+DCYRSPDPVTGKRNYTYM+VVR+ LGGR VQLCG
Sbjct: 62  QLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVQLCG 121

Query: 123 LAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ 182
           LAQYGNLIG+TIGYTITASISMVAVKRSNCFH++GH+VKC TSN P MIIFA IQI+LSQ
Sbjct: 122 LAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQ 181

Query: 183 IPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKVW 241
           IPNFH LSWLSILAAVMSF Y+SIG+GLSIAK  G G H  TTLTG TVG+DVS +EK+W
Sbjct: 182 IPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIW 241

Query: 242 RAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP-ENKSMKRATAVGVTTTTLFYIMCGVMGY 300
           R FQAIGD+AFAYA+STVL+EIQDTLK+ PP ENK+MKRA+ VGV+TTT FY++CG +GY
Sbjct: 242 RTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGY 301

Query: 301 LAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQV 341
            AFGNDAPGNFLTGFGFYEPFWL+DFAN CIAVHLIGAYQV
Sbjct: 302 AAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQV 342
Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.
Arabidopsis thaliana (taxid: 3702)
>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1 Back     alignment and function description
>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1 Back     alignment and function description
>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1 Back     alignment and function description
>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2 Back     alignment and function description
>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1 Back     alignment and function description
>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1 Back     alignment and function description
>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1 Back     alignment and function description
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
31455393 481 amino acid permease 6 [Brassica napus] 0.971 0.698 0.812 1e-162
255537896 484 amino acid transporter, putative [Ricinu 0.982 0.702 0.782 1e-162
363814354 479 uncharacterized protein LOC100777963 [Gl 0.965 0.697 0.817 1e-162
356515653 479 PREDICTED: amino acid permease 6-like [G 0.965 0.697 0.817 1e-161
284519840 483 amino acid permease 6 [Populus tremula x 0.979 0.701 0.794 1e-160
357436349 472 Amino acid transporter [Medicago truncat 0.956 0.701 0.810 1e-159
357466761 482 Amino acid permease [Medicago truncatula 0.973 0.699 0.799 1e-158
388508848 482 unknown [Medicago truncatula] 0.973 0.699 0.799 1e-158
297795723 507 hypothetical protein ARALYDRAFT_495022 [ 0.968 0.660 0.749 1e-155
15240523 481 amino acid permease 6 [Arabidopsis thali 0.968 0.696 0.803 1e-155
>gi|31455393|emb|CAD92450.1| amino acid permease 6 [Brassica napus] Back     alignment and taxonomy information
 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 278/342 (81%), Positives = 310/342 (90%), Gaps = 6/342 (1%)

Query: 5   MQKNSMYIEQ---NDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAI 61
           M+K SM+IEQ   +   GD+ K+F DDDGR KRTGTW+T SAHIITAVIGSGVLSLAWAI
Sbjct: 1   MEKKSMFIEQSFTDHKSGDMNKNF-DDDGRQKRTGTWMTGSAHIITAVIGSGVLSLAWAI 59

Query: 62  AQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC 121
           AQLGWVAGPAVLMAFSFITY+TST+L+DCYRSPDPVTGKRNYTYM+VVR+ LGGR V LC
Sbjct: 60  AQLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVMLC 119

Query: 122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181
           GLAQYGNLIG+TIGYTITASISMVAVKRSNCFH++GH+VKC TSN P MIIFACIQIVLS
Sbjct: 120 GLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCSTSNTPFMIIFACIQIVLS 179

Query: 182 QIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHA-TTLTGTTVGVDVSASEKV 240
           QIPNFH LSWLSILAAVMSF+Y+SIGIGLSIAKV G G HA T LTG TVGVDV+ SEKV
Sbjct: 180 QIPNFHNLSWLSILAAVMSFSYASIGIGLSIAKVAGGGVHARTALTGVTVGVDVTGSEKV 239

Query: 241 WRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP-ENKSMKRATAVGVTTTTLFYIMCGVMG 299
           WR FQA+GD+AFAYA+STVL+EIQDTLK+SPP ENK+MKRA+ VGV+TTT FY++CG +G
Sbjct: 240 WRTFQAVGDIAFAYAYSTVLIEIQDTLKASPPSENKAMKRASLVGVSTTTFFYMLCGCVG 299

Query: 300 YLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQV 341
           Y AFGN+APGNFLTGFGFYEPFWL+DFAN CIAVHL+GAYQV
Sbjct: 300 YAAFGNNAPGNFLTGFGFYEPFWLIDFANVCIAVHLVGAYQV 341

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537896|ref|XP_002510013.1| amino acid transporter, putative [Ricinus communis] gi|223550714|gb|EEF52200.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|363814354|ref|NP_001242816.1| uncharacterized protein LOC100777963 [Glycine max] gi|255642183|gb|ACU21356.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356515653|ref|XP_003526513.1| PREDICTED: amino acid permease 6-like [Glycine max] Back     alignment and taxonomy information
>gi|284519840|gb|ADB92670.1| amino acid permease 6 [Populus tremula x Populus alba] Back     alignment and taxonomy information
>gi|357436349|ref|XP_003588450.1| Amino acid transporter [Medicago truncatula] gi|355477498|gb|AES58701.1| Amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|357466761|ref|XP_003603665.1| Amino acid permease [Medicago truncatula] gi|355492713|gb|AES73916.1| Amino acid permease [Medicago truncatula] Back     alignment and taxonomy information
>gi|388508848|gb|AFK42490.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297795723|ref|XP_002865746.1| hypothetical protein ARALYDRAFT_495022 [Arabidopsis lyrata subsp. lyrata] gi|297311581|gb|EFH42005.1| hypothetical protein ARALYDRAFT_495022 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240523|ref|NP_199774.1| amino acid permease 6 [Arabidopsis thaliana] gi|75220393|sp|P92934.1|AAP6_ARATH RecName: Full=Amino acid permease 6; AltName: Full=Amino acid transporter AAP6 gi|1769887|emb|CAA65051.1| amino acid permease 6 [Arabidopsis thaliana] gi|8809686|dbj|BAA97227.1| amino acid permease 6 [Arabidopsis thaliana] gi|110738094|dbj|BAF00980.1| amino acid permease 6 [Arabidopsis thaliana] gi|332008455|gb|AED95838.1| amino acid permease 6 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
TAIR|locus:2168912 481 AAP6 "amino acid permease 6" [ 0.973 0.700 0.779 2.8e-144
TAIR|locus:2016600 485 AAP1 "amino acid permease 1" [ 0.913 0.651 0.727 2.2e-128
TAIR|locus:2201871 475 AAP8 "amino acid permease 8" [ 0.933 0.68 0.708 4.9e-124
TAIR|locus:2184707 493 AAP2 "amino acid permease 2" [ 0.907 0.636 0.625 4.3e-109
TAIR|locus:2163981 466 AAP4 "amino acid permease 4" [ 0.907 0.673 0.622 2.4e-108
TAIR|locus:2031402 476 AAP3 "amino acid permease 3" [ 0.913 0.663 0.618 3e-108
TAIR|locus:2205876 480 AAP5 "amino acid permease 5" [ 0.919 0.662 0.557 8.2e-99
TAIR|locus:2172868 467 AAP7 "amino acid permease 7" [ 0.959 0.710 0.507 2.6e-86
UNIPROTKB|Q85V22 441 ht "Histidine amino acid trans 0.849 0.666 0.348 8.9e-38
TAIR|locus:2024071 441 LHT2 "lysine histidine transpo 0.841 0.659 0.321 8.3e-35
TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1410 (501.4 bits), Expect = 2.8e-144, P = 2.8e-144
 Identities = 268/344 (77%), Positives = 300/344 (87%)

Query:     3 MEMQKNSMYIEQNDPE---GDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAW 59
             ME +K SM++EQ+ PE   GD  K+F D+DGR KRTGTW+T SAHIITAVIGSGVLSLAW
Sbjct:     1 ME-KKKSMFVEQSFPEHEIGDTNKNF-DEDGRDKRTGTWMTGSAHIITAVIGSGVLSLAW 58

Query:    60 AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQ 119
             AIAQLGWVAGPAVLMAFSFITY+TST+L+DCYRSPDPVTGKRNYTYM+VVR+ LGGR VQ
Sbjct:    59 AIAQLGWVAGPAVLMAFSFITYFTSTMLADCYRSPDPVTGKRNYTYMEVVRSYLGGRKVQ 118

Query:   120 LCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIV 179
             LCGLAQYGNLIG+TIGYTITASISMVAVKRSNCFH++GH+VKC TSN P MIIFA IQI+
Sbjct:   119 LCGLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQII 178

Query:   180 LSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHAXXXXXXXXXX-DVSASE 238
             LSQIPNFH LSWLSILAAVMSF Y+SIG+GLSIAK  G G H            DVS +E
Sbjct:   179 LSQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAE 238

Query:   239 KVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPP-ENKSMKRATAVGVTTTTLFYIMCGV 297
             K+WR FQAIGD+AFAYA+STVL+EIQDTLK+ PP ENK+MKRA+ VGV+TTT FY++CG 
Sbjct:   239 KIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGC 298

Query:   298 MGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQV 341
             +GY AFGNDAPGNFLTGFGFYEPFWL+DFAN CIAVHLIGAYQV
Sbjct:   299 VGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQV 342
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA
GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA
GO:0015810 "aspartate transport" evidence=IDA
GO:0015827 "tryptophan transport" evidence=IDA
TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P92934AAP6_ARATHNo assigned EC number0.80350.96820.6964yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AAP6
AAP6 (AMINO ACID PERMEASE 6); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter; Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem. ; Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xyl [...] (481 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT5G08390
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (839 aa)
      • 0.784
AT2G07280
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (400 aa)
      • 0.784
CAT5
CAT5 (CATIONIC AMINO ACID TRANSPORTER 5); L-glutamate transmembrane transporter/ L-lysine trans [...] (569 aa)
      • 0.679
CAT7
CAT7 (CATIONIC AMINO ACID TRANSPORTER 7); cationic amino acid transmembrane transporter; Encode [...] (584 aa)
      • 0.675
AT2G41230
unknown protein; unknown protein; INVOLVED IN- biological_process unknown; EXPRESSED IN- 15 pla [...] (88 aa)
      • 0.647
At1g58030
CAT2 (CATIONIC AMINO ACID TRANSPORTER 2); amino acid transmembrane transporter; Encodes a membe [...] (635 aa)
      • 0.571
AT5G45580
transcription factor; transcription factor; FUNCTIONS IN- transcription factor activity; INVOLV [...] (264 aa)
      • 0.565
UPS2
UPS2 (UREIDE PERMEASE 2); Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) trans [...] (398 aa)
      • 0.534
AT5G03555
permease, cytosine/purines, uracil, thiamine, allantoin family protein; permease, cytosine/puri [...] (599 aa)
      • 0.508
AT5G36940.1-P
CAT3 (CATIONIC AMINO ACID TRANSPORTER 3); basic amino acid transmembrane transporter/ cationic [...] (609 aa)
      • 0.508

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
pfam01490 406 pfam01490, Aa_trans, Transmembrane amino acid tran 2e-91
COG0814 415 COG0814, SdaC, Amino acid permeases [Amino acid tr 8e-08
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  278 bits (714), Expect = 2e-91
 Identities = 106/308 (34%), Positives = 151/308 (49%), Gaps = 18/308 (5%)

Query: 34  RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRS 93
            T +   A  ++I A+IG+GVLSL +A  QLGW+ G  +L+    I+ YT  LL  C + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 94  PDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCF 153
            D V GKR  +Y D+     G +   L   A   NL GV I Y I A  ++ A+  S   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 154 HRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIA 213
             H        S    +IIF  I I LS IPN   LS LS++AAV S  Y  I +     
Sbjct: 121 TCH-------ISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAE 172

Query: 214 KVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKSSPPE 273
             +               +    + K+ R F AIG + FA+    VL+ IQ+T+K SP +
Sbjct: 173 LGVLTAQ-------GVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMK-SPSK 224

Query: 274 NKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAV 333
            K+M +     +   T+ YI+ G++GYLAFGN+  GN L         WL+D AN  + +
Sbjct: 225 FKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVL 282

Query: 334 HLIGAYQV 341
           HL+ +Y +
Sbjct: 283 HLLLSYPL 290

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 346
KOG1303 437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206 467 amino acid transporter; Provisional 100.0
KOG1304 449 consensus Amino acid transporters [Amino acid tran 100.0
PF01490 409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074 473 auxin influx permease; Provisional 100.0
KOG1305 411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303 524 consensus Vesicular inhibitory amino acid transpor 99.96
COG0814 415 SdaC Amino acid permeases [Amino acid transport an 99.96
PRK10483 414 tryptophan permease; Provisional 99.83
PRK09664 415 tryptophan permease TnaB; Provisional 99.83
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.81
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.81
PRK15132 403 tyrosine transporter TyrP; Provisional 99.79
TIGR00814397 stp serine transporter. The HAAAP family includes 99.68
PRK10435 435 cadB lysine/cadaverine antiporter; Provisional 99.67
PRK13629 443 threonine/serine transporter TdcC; Provisional 99.66
PRK15049 499 L-asparagine permease; Provisional 99.64
PRK10655 438 potE putrescine transporter; Provisional 99.63
KOG1287 479 consensus Amino acid transporters [Amino acid tran 99.62
PRK10644 445 arginine:agmatin antiporter; Provisional 99.62
PRK11049 469 D-alanine/D-serine/glycine permease; Provisional 99.62
PRK10249 458 phenylalanine transporter; Provisional 99.62
TIGR01773 452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.6
PRK11387 471 S-methylmethionine transporter; Provisional 99.6
PRK10836 489 lysine transporter; Provisional 99.59
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.59
TIGR00909 429 2A0306 amino acid transporter. 99.57
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 99.56
PRK10580 457 proY putative proline-specific permease; Provision 99.56
PRK11021 410 putative transporter; Provisional 99.56
TIGR00913 478 2A0310 amino acid permease (yeast). 99.56
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.55
PRK10746 461 putative transport protein YifK; Provisional 99.55
PRK10238 456 aromatic amino acid transporter; Provisional 99.54
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.52
TIGR00911 501 2A0308 L-type amino acid transporter. 99.51
TIGR00930 953 2a30 K-Cl cotransporter. 99.5
PRK11357 445 frlA putative fructoselysine transporter; Provisio 99.49
COG1113 462 AnsP Gamma-aminobutyrate permease and related perm 99.47
TIGR00908 442 2A0305 ethanolamine permease. The three genes used 99.46
PRK10197 446 gamma-aminobutyrate transporter; Provisional 99.41
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.38
PF03845320 Spore_permease: Spore germination protein; InterPr 99.33
COG0531 466 PotE Amino acid transporters [Amino acid transport 99.31
PF13520 426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.25
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 99.24
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.2
PRK15238 496 inner membrane transporter YjeM; Provisional 99.14
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 99.1
TIGR00907 482 2A0304 amino acid permease (GABA permease). 99.08
KOG3832319 consensus Predicted amino acid transporter [Genera 98.98
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.91
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.81
COG3949349 Uncharacterized membrane protein [Function unknown 98.64
KOG1289 550 consensus Amino acid transporters [Amino acid tran 98.35
PRK11375 484 allantoin permease; Provisional 98.19
TIGR00800 442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.1
TIGR02119 471 panF sodium/pantothenate symporter. Pantothenate ( 97.9
PRK09442 483 panF sodium/panthothenate symporter; Provisional 97.88
PRK12488 549 acetate permease; Provisional 97.78
COG1953 497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.77
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.73
TIGR00813 407 sss transporter, SSS family. have different number 97.73
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.7
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 97.69
PRK09395 551 actP acetate permease; Provisional 97.61
PF00474 406 SSF: Sodium:solute symporter family; InterPro: IPR 97.57
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 97.48
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.44
PRK11017 404 codB cytosine permease; Provisional 97.41
TIGR02358 386 thia_cytX probable hydroxymethylpyrimidine transpo 97.3
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 97.27
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 97.23
COG1457 442 CodB Purine-cytosine permease and related proteins 97.15
PRK15419 502 proline:sodium symporter PutP; Provisional 97.04
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.98
KOG1288 945 consensus Amino acid transporters [Amino acid tran 96.74
PRK10484 523 putative transporter; Provisional 96.6
PF02133 440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.31
COG4147 529 DhlC Predicted symporter [General function predict 96.12
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 95.63
PHA02764399 hypothetical protein; Provisional 95.1
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 95.04
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 95.02
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.95
PRK15015 701 carbon starvation protein A; Provisional 94.94
KOG2466 572 consensus Uridine permease/thiamine transporter/al 94.12
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 93.23
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 92.64
COG1966 575 CstA Carbon starvation protein, predicted membrane 92.18
PRK15433 439 branched-chain amino acid transport system 2 carri 90.76
PF01566358 Nramp: Natural resistance-associated macrophage pr 89.94
PRK15433439 branched-chain amino acid transport system 2 carri 89.32
PRK00701 439 manganese transport protein MntH; Reviewed 88.94
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 87.08
PF05525 427 Branch_AA_trans: Branched-chain amino acid transpo 85.87
COG4145 473 PanF Na+/panthothenate symporter [Coenzyme metabol 84.07
COG0733 439 Na+-dependent transporters of the SNF family [Gene 80.22
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-44  Score=331.85  Aligned_cols=295  Identities=39%  Similarity=0.651  Sum_probs=263.7

Q ss_pred             CCCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHH
Q 019094           30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV  109 (346)
Q Consensus        30 ~~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~  109 (346)
                      ..++|+.||+++.++.++.++|.|+|++||++++.||..|+++++..++++.||+.+|.+|++.++++.++|.++|.|++
T Consensus        32 ~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~  111 (437)
T KOG1303|consen   32 ITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG  111 (437)
T ss_pred             cccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999998888889999999


Q ss_pred             HHHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchhHHHHHHHHHHhcCCCccch
Q 019094          110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL  189 (346)
Q Consensus       110 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~pl~~~~~l~~l  189 (346)
                      +++||+++++++.+.+.+..++.|+.|++..+|++..+.+.+|.+..      ..+...|++++.++.+|++++||++.+
T Consensus       112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l  185 (437)
T KOG1303|consen  112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSL  185 (437)
T ss_pred             HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchh
Confidence            99999999999999999999999999999999999999997766432      223678899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHH-HhhhhhhhhhhccchhHHHhHhhhc
Q 019094          190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRA-FQAIGDVAFAYAFSTVLVEIQDTLK  268 (346)
Q Consensus       190 ~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~fsf~~~~~i~~i~~em~  268 (346)
                      ++.|..+.+..+++..+.+..+...+.+...........      .+.    .. +++++++.|+|.||..+|+|+.+||
T Consensus       186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~------~~~----~~~f~a~g~iaFaf~gH~v~peIq~tMk  255 (437)
T KOG1303|consen  186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL------GTI----PTVFTALGIIAFAYGGHAVLPEIQHTMK  255 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC------CCC----cchhhhhhheeeeecCCeeeeehHhhcC
Confidence            999999999999888888777776665543222221111      010    11 7999999999999999999999999


Q ss_pred             CCCccccchhhhHHHHHHHHHHHHHhhhhheeeccCCCCCcccccccCCCCchHHHHHHHHHHHHHHhhhhccccccC
Q 019094          269 SSPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGNDAPGNFLTGFGFYEPFWLVDFANACIAVHLIGAYQVNSRLM  346 (346)
Q Consensus       269 ~p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~  346 (346)
                      +|    ++++|++.+++.+++++|..+++.||.+|||+++++++.|++  +|.|+...+++++.+|++.+|+++++|+
T Consensus       256 ~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl  327 (437)
T KOG1303|consen  256 SP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPL  327 (437)
T ss_pred             Cc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcch
Confidence            99    779999999999999999999999999999999999999996  6899999999999999999999999995

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.68
3gia_A 444 Uncharacterized protein MJ0609; membrane protein, 99.55
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.32
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.54
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 97.49
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 96.67
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 88.72
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.68  E-value=1e-15  Score=144.83  Aligned_cols=248  Identities=11%  Similarity=-0.012  Sum_probs=165.9

Q ss_pred             CCcccccHHHHHHHHHHHhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHH
Q 019094           31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR  110 (346)
Q Consensus        31 ~~~~~~s~~~~~~~li~~~iG~Gil~lP~~~~~~G~~~g~~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~  110 (346)
                      +++|+.+.++.++..+++++|+|++..|...++.|.. +++.+++.+++....+..+.|..++.+. .|    .+.+.++
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-~G----g~y~~~~   78 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-PG----GSYAYAR   78 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-TT----THHHHHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-CC----CchhhHH
Confidence            3467889999999999999999999999988888864 7888888999999999999998876653 22    3555678


Q ss_pred             HHcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHhhcccccCCCCcccccCCcchh-HHHHHHHHHHhcCCCccch
Q 019094          111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM-IIFACIQIVLSQIPNFHKL  189 (346)
Q Consensus       111 ~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-ii~~~~~~pl~~~~~l~~l  189 (346)
                      +.+||+.+++..+..++........+....+++++.+++..           ..+...+. .+..++++.....+..+..
T Consensus        79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~in~~g~~~~  147 (445)
T 3l1l_A           79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----------KDPWVLTITCVVVLWIFVLLNIVGPKMI  147 (445)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----------GSHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----------cccHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            89999999999999999888888888888888877655420           00001111 1122222233334455555


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhcCCCCCccccccccccccCcchhhHHHHHhhhhhhhhhhccchhHHHhHhhhcC
Q 019094          190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQDTLKS  269 (346)
Q Consensus       190 ~~~s~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~em~~  269 (346)
                      ..++.+.+...+...+.+++..+... ......   +.+  .  ......+.++..++....|+|.|++.+..+.+|+||
T Consensus       148 ~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~~~~---~~~--~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~  219 (445)
T 3l1l_A          148 TRVQAVATVLALIPIVGIAVFGWFWF-RGETYM---AAW--N--VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKN  219 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTC-CCCCCC---CC---------------HHHHHHHHHHTTTTTTHHHHGGGGBSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-Chhhcc---ccc--C--ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence            55555444433332222222222111 111000   111  0  011112456788899999999999999999999999


Q ss_pred             CCccccchhhhHHHHHHHHHHHHHhhhhheeeccCCC
Q 019094          270 SPPENKSMKRATAVGVTTTTLFYIMCGVMGYLAFGND  306 (346)
Q Consensus       270 p~~~~~~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~  306 (346)
                      |   +|+.+|++..+..++.++|++..+......+.+
T Consensus       220 p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          220 P---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             c---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            9   388999999999999999998888766666543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 87.21
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.21  E-value=9.2  Score=33.70  Aligned_cols=107  Identities=12%  Similarity=0.018  Sum_probs=65.1

Q ss_pred             cHHHHHHHHHHHhhhhhhh-HHHHHHHHhChhHHH----HHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccHHHHHHH
Q 019094           37 TWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGP----AVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA  111 (346)
Q Consensus        37 s~~~~~~~li~~~iG~Gil-~lP~~~~~~G~~~g~----~~~~~~~~l~~~t~~~l~~~~~~~~~~~~~~~~~y~~i~~~  111 (346)
                      |..+-++..++..+|-|=+ -.||-..+-|-..=+    +.++++++=..+.=..+++-.++.+      ...+..+...
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~------i~~~~~i~~~   79 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQG------HGTTPAIFYL   79 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTT------CCSHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc------ccHHHHHHHH
Confidence            4557778888999998865 599987555522112    2222222222233334444444433      3478877777


Q ss_pred             HcCCcchhhHHHHHHHHHHhHHHHHHHhhhhhhHHHHh
Q 019094          112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR  149 (346)
Q Consensus       112 ~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~l~~  149 (346)
                      ..+.+....+.+...+.++..++-|.+..+-.+..+.+
T Consensus        80 ~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~  117 (509)
T d2a65a1          80 LWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIK  117 (509)
T ss_dssp             HSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66665556677777777777777787777776655544