Citrus Sinensis ID: 019103
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 346 | 2.2.26 [Sep-21-2011] | |||||||
| Q84WV9 | 320 | Glutaminyl-peptide cyclot | yes | no | 0.910 | 0.984 | 0.561 | 2e-99 |
| >sp|Q84WV9|QPCT_ARATH Glutaminyl-peptide cyclotransferase OS=Arabidopsis thaliana GN=QCT PE=1 SV=1 | Back alignment and function desciption |
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Score = 362 bits (929), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 195/347 (56%), Positives = 236/347 (68%), Gaps = 32/347 (9%)
Query: 1 MGSRSLKKKPSKRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVML 60
M +RS K+ +KRS+ QS PA S + S S M IP +L
Sbjct: 1 MATRSPYKRQTKRSMIQS-LPASSSASSRRRFISRKRFAMM-------------IPLALL 46
Query: 61 ---IFFFLCGFVLLCISSNMWIRFPG--VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAEN 115
+F F F N W + G +D S I I+VV EFPHDP AFTQGLLYA N
Sbjct: 47 SGAVFLFFMPF-------NSWGQSSGSSLDLSHRINEIEVVAEFPHDPDAFTQGLLYAGN 99
Query: 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIY 175
DTLFESTGLYG+SSVR+V L TGKVE + +M+ +YFGEGLTLLGE+LFQV WL TGF Y
Sbjct: 100 DTLFESTGLYGKSSVRKVDLRTGKVEILEKMDNTYFGEGLTLLGERLFQVAWLTNTGFTY 159
Query: 176 DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235
D NL+K++ F H MKDGWGLATDGK LFGSDG+S LY++DPQT+KV K IVRY GREV
Sbjct: 160 DLRNLSKVKPFKHHMKDGWGLATDGKALFGSDGTSTLYRMDPQTMKVTDKHIVRYNGREV 219
Query: 236 RNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGI 295
R LNELE+I EVWANVWQ+DCIARIS +DG +LGW+LL L L+ +G+ GIDVLNGI
Sbjct: 220 RYLNELEYINNEVWANVWQSDCIARISPKDGSLLGWILLSKLSRGLLKSGHRGIDVLNGI 279
Query: 296 AWDSNRNRIFVTGKLWPKLYEINLREMKRERKDGFNVDTIIEQLCLL 342
AWDS++ R+FVTGKLWPKLY+I L++ + + IEQ CL+
Sbjct: 280 AWDSDKQRLFVTGKLWPKLYQIKLKQASAKSGN------YIEQQCLV 320
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Converts glutamine and N-terminal glutamyl residues in peptides to 5-oxoproline and 5-oxoproline residues. Not involved in the major pathway for 5-oxoproline production. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 3EC: .EC: 2EC: .EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 346 | ||||||
| 449445993 | 324 | PREDICTED: glutaminyl-peptide cyclotrans | 0.910 | 0.972 | 0.607 | 1e-107 | |
| 224079742 | 264 | predicted protein [Populus trichocarpa] | 0.745 | 0.977 | 0.725 | 1e-107 | |
| 302143792 | 315 | unnamed protein product [Vitis vinifera] | 0.843 | 0.926 | 0.623 | 1e-106 | |
| 224135267 | 307 | predicted protein [Populus trichocarpa] | 0.835 | 0.941 | 0.665 | 1e-106 | |
| 255545178 | 303 | catalytic, putative [Ricinus communis] g | 0.841 | 0.960 | 0.617 | 1e-105 | |
| 388494830 | 325 | unknown [Medicago truncatula] | 0.907 | 0.966 | 0.564 | 1e-102 | |
| 297799422 | 317 | glutamine cyclotransferase family protei | 0.910 | 0.993 | 0.572 | 2e-99 | |
| 3342798 | 288 | glutamine cyclotransferase precursor [Ca | 0.777 | 0.934 | 0.635 | 4e-99 | |
| 112491423 | 266 | Chain A, Unbound Glutaminyl Cyclotransfe | 0.722 | 0.939 | 0.666 | 1e-98 | |
| 356529143 | 319 | PREDICTED: glutaminyl-peptide cyclotrans | 0.901 | 0.978 | 0.565 | 5e-98 |
| >gi|449445993|ref|XP_004140756.1| PREDICTED: glutaminyl-peptide cyclotransferase-like [Cucumis sativus] gi|449485499|ref|XP_004157189.1| PREDICTED: glutaminyl-peptide cyclotransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/344 (60%), Positives = 247/344 (71%), Gaps = 29/344 (8%)
Query: 1 MGSRSLKKKPSKRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVML 60
M + SLK++ SKRS S+ PS PS S + A +L
Sbjct: 1 MAAGSLKRRQSKRSNSKPSIVMPS---RPSHQSFLAHRTTA-----------------LL 40
Query: 61 IFFFLCGFVLLC--ISSNMWIRFPGVD-QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDT 117
+F L F +L IS N+ R P + QSP IY+I+VVNEFPHDPRAFTQGL+Y ENDT
Sbjct: 41 LFISLIFFAVLVSGISLNVLRRSPKYEVQSPMIYSIEVVNEFPHDPRAFTQGLVYVENDT 100
Query: 118 LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177
LFESTGLYG+SSVR+VAL TGK E +++M+ SYFGEGLTLLGE+LFQVTWL+KTGFIYDQ
Sbjct: 101 LFESTGLYGQSSVRKVALSTGKTEVLHKMDDSYFGEGLTLLGERLFQVTWLKKTGFIYDQ 160
Query: 178 NNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237
+NLN+++EFTHQM DGWGLATDGK+L+GSDG+S LYQIDP+T V K +V Y+G EV N
Sbjct: 161 DNLNEVKEFTHQMNDGWGLATDGKILYGSDGTSTLYQIDPETFIVTNKWVVSYQGDEVHN 220
Query: 238 LNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAW 297
LNELEFI GEVWANVW TDCIARIS DG VLGWVLLP LR +L+ G IDVLNGIAW
Sbjct: 221 LNELEFINGEVWANVWMTDCIARISVRDGGVLGWVLLPTLRRKLLQEGKR-IDVLNGIAW 279
Query: 298 DSNRNRIFVTGKLWPKLYEINLREMKRERKDGFNVDTIIEQLCL 341
DS +NR+FVTGKLWPKLYEI ++ D I+QLCL
Sbjct: 280 DSGKNRLFVTGKLWPKLYEIKVQPSNEHYG-----DEKIKQLCL 318
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079742|ref|XP_002305935.1| predicted protein [Populus trichocarpa] gi|222848899|gb|EEE86446.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/262 (72%), Positives = 218/262 (83%), Gaps = 4/262 (1%)
Query: 58 VMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDT 117
V L+ F F LL ISSN+ GV P +Y++QV+NEFPHDP AFTQGLLYA NDT
Sbjct: 7 VSLVMIFGVIF-LLGISSNI---LSGVASVPKLYSVQVINEFPHDPSAFTQGLLYAGNDT 62
Query: 118 LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177
L+ESTGLYG+SSVRRVAL TGKVEA+ +M+ SYFGEGLT ++LFQVTWL KTGFIYD
Sbjct: 63 LYESTGLYGKSSVRRVALHTGKVEALQKMDDSYFGEGLTYFEQRLFQVTWLTKTGFIYDP 122
Query: 178 NNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237
NNL+K+ +FTH M+DGWGLAT+GKVLFGSDG+S LYQ+DPQTLKVI K IVRY G EV
Sbjct: 123 NNLSKIGKFTHGMEDGWGLATNGKVLFGSDGTSALYQLDPQTLKVISKQIVRYNGHEVHY 182
Query: 238 LNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAW 297
LNELEF+ E+WANVWQTDCIARIS +DG VLGW+LLPNLR+ L+AAG+NGIDVLNGIAW
Sbjct: 183 LNELEFVNDEIWANVWQTDCIARISLKDGAVLGWILLPNLRKGLIAAGHNGIDVLNGIAW 242
Query: 298 DSNRNRIFVTGKLWPKLYEINL 319
D N NR+FVTGKLWPKLYEI L
Sbjct: 243 DDNDNRLFVTGKLWPKLYEIKL 264
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143792|emb|CBI22653.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/319 (62%), Positives = 238/319 (74%), Gaps = 27/319 (8%)
Query: 25 PSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVMLIFFFLCGFVLLCIS--SNMWIRFP 82
P P P +S SS +C + F I FL V++ +S S F
Sbjct: 16 PYP-PMASKSSPLNCTKISIF---------------ISLFLASIVIIFLSLPSKALNSF- 58
Query: 83 GVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEA 142
S IY+++VV EF HDP AFTQGL+Y N+TLFESTGLY RSSVR+VAL TGKVEA
Sbjct: 59 ---DSTQIYSVEVVKEFHHDPYAFTQGLVYGGNETLFESTGLYQRSSVRKVALHTGKVEA 115
Query: 143 INQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKV 202
+ +M+ SYFGEGLTLLGE+LFQVTWL+KTGFIYD+N+L+K E FT+ M+DGWGLAT+G+V
Sbjct: 116 LQKMDDSYFGEGLTLLGERLFQVTWLKKTGFIYDRNDLSKFETFTNHMRDGWGLATNGEV 175
Query: 203 LFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARIS 262
LFGSDG+S LYQIDPQ++KVI + +V+YKG EV NLNELEF+ GE+WANVWQTDCIARIS
Sbjct: 176 LFGSDGTSTLYQIDPQSMKVIGEHVVKYKGHEVHNLNELEFVDGEIWANVWQTDCIARIS 235
Query: 263 HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322
HEDG V GW+LL NLRE L+AAG IDVLNGIAWDS +NR+FVTGKLWPKLYEI + M
Sbjct: 236 HEDGTVRGWILLNNLREGLLAAGRRDIDVLNGIAWDSEKNRLFVTGKLWPKLYEIKVHPM 295
Query: 323 KRERKDGFNVDTIIEQLCL 341
KR +DG +IEQLCL
Sbjct: 296 KRRFQDG-----VIEQLCL 309
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224135267|ref|XP_002327606.1| predicted protein [Populus trichocarpa] gi|222836160|gb|EEE74581.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/302 (66%), Positives = 236/302 (78%), Gaps = 13/302 (4%)
Query: 40 MASNHFSRFRHYNKGIPAVMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEF 99
M+S+ +RFR Y K V L+ F + LL +SS+ IR GV P +Y IQV NEF
Sbjct: 15 MSSSASTRFR-YKKVSVFVSLVMIFGVVY-LLGVSSS--IR-SGVAFVPKLYAIQVFNEF 69
Query: 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG 159
PHDP AFTQGLLYA N TL+ESTGLYG+SSVRRVAL TGKVE + +M+GSYFGEGLTLL
Sbjct: 70 PHDPSAFTQGLLYAGNGTLYESTGLYGKSSVRRVALNTGKVEVLQEMDGSYFGEGLTLLE 129
Query: 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQT 219
+ LFQVTW KTGFIYD+N+L+K+ EFTH+M+DGWGLAT+GKVLFGSDG+S LYQ+DPQT
Sbjct: 130 QSLFQVTWSTKTGFIYDRNDLSKIREFTHEMEDGWGLATNGKVLFGSDGTSALYQLDPQT 189
Query: 220 LKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRE 279
LKVI K IVRY G EV LNELEF+ EVWAN TDCIARIS DG VLGW+LLPNLR+
Sbjct: 190 LKVIGKQIVRYNGHEVHYLNELEFVNDEVWAN---TDCIARISQRDGSVLGWILLPNLRK 246
Query: 280 RLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKDGFNVDTIIEQL 339
L+ AGY+GIDVLNGIAWD+N NR+FVTGKLWPKLYEI L+ +K+ G +IEQL
Sbjct: 247 GLIEAGYHGIDVLNGIAWDANDNRLFVTGKLWPKLYEIKLQPIKKHFDAG-----VIEQL 301
Query: 340 CL 341
C+
Sbjct: 302 CI 303
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545178|ref|XP_002513650.1| catalytic, putative [Ricinus communis] gi|223547558|gb|EEF49053.1| catalytic, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/311 (61%), Positives = 233/311 (74%), Gaps = 20/311 (6%)
Query: 1 MGSRSLKKKPS-KRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVM 59
MG++S+ K+ + KRS ++D PSPS ++HF+ + +P ++
Sbjct: 1 MGTKSVNKRSNNKRSTPKADIAMPSPS--------------HTSHFTL-----RKVPLLV 41
Query: 60 LIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLF 119
L LL IS VDQS IY IQVVNEFPHDP AFTQGLLYA NDTLF
Sbjct: 42 LFVMIFGIIALLGISPITLSSLGSVDQSSKIYAIQVVNEFPHDPSAFTQGLLYAGNDTLF 101
Query: 120 ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179
ESTGLYG SSVRRV L++GKVE + M+ SYFGEGLTLLGE+LFQVTWL+KTGFIYD+N+
Sbjct: 102 ESTGLYGESSVRRVDLQSGKVEVLQNMDASYFGEGLTLLGERLFQVTWLRKTGFIYDRND 161
Query: 180 LNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN 239
L+K++EFTHQM DGWGLATDGKVLFGSDG+S LYQ+D QTLKV +K+IV+Y +EVR LN
Sbjct: 162 LSKIKEFTHQMNDGWGLATDGKVLFGSDGTSTLYQLDAQTLKVRKKNIVKYDNQEVRYLN 221
Query: 240 ELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDS 299
ELEF+ GE+WAN+WQTDCIA+IS +DG VLGW++L NLR+ L+AAGY GIDVLNGIAWDS
Sbjct: 222 ELEFVNGEIWANIWQTDCIAKISQKDGTVLGWIMLENLRKGLMAAGYRGIDVLNGIAWDS 281
Query: 300 NRNRIFVTGKL 310
N NR+F G L
Sbjct: 282 NNNRLFALGCL 292
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388494830|gb|AFK35481.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/340 (56%), Positives = 238/340 (70%), Gaps = 26/340 (7%)
Query: 3 SRSLKKKPSKRSISQSDRPAPS-PSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVMLI 61
+RSLKK+P + + P PS +PSP + R + + A++ +
Sbjct: 4 TRSLKKRPRESRL----HPNPSMATPSPPTRR-------------RQPQHLATVSAILAV 46
Query: 62 FFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFES 121
+ F LL +SSN W F QS SI TI VVN FPHDP+AFTQGLLYA ND+LFES
Sbjct: 47 LLVISVFCLLLVSSNTWRAF---QQSVSIDTITVVNVFPHDPQAFTQGLLYAGNDSLFES 103
Query: 122 TGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181
TG+YG+S+VR+VAL TGKVE + +M+ FGEGLTLLG +L QV WLQ GF YD NL+
Sbjct: 104 TGIYGKSTVRKVALHTGKVEKLQKMDNLLFGEGLTLLGNRLIQVIWLQTKGFTYDPKNLS 163
Query: 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241
+L F H MKDGWGLATDGKVLFGSDGSS LY+IDPQT K I K ++ YKG +V NLNEL
Sbjct: 164 ELGTFNHDMKDGWGLATDGKVLFGSDGSSTLYKIDPQTFKAISKQVIYYKGHQVHNLNEL 223
Query: 242 EFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNR 301
E+I EVWANV+ TDCIARIS DG+V+GW+LLPNLR+ L+ AG N IDVLNGIAWD+ +
Sbjct: 224 EYINDEVWANVFTTDCIARISPNDGLVVGWILLPNLRKELIEAGNNDIDVLNGIAWDAEQ 283
Query: 302 NRIFVTGKLWPKLYEINLREMKRERKDGFNVDTIIEQLCL 341
RIFVTGKLWPKL+EI + +K ++G ++E+LCL
Sbjct: 284 ERIFVTGKLWPKLFEIKITPIKSRIEEG-----MVEKLCL 318
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799422|ref|XP_002867595.1| glutamine cyclotransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297313431|gb|EFH43854.1| glutamine cyclotransferase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 197/344 (57%), Positives = 240/344 (69%), Gaps = 29/344 (8%)
Query: 1 MGSRSLKKKPSKRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVML 60
M SR K+ +KRS+ QS P+SS+S R R ++ A+ML
Sbjct: 1 MASRLPYKRQTKRSMIQS---------LPASSAS------------RRRFISRKTIAMML 39
Query: 61 IFFFLCGFVLLC-ISSNMWIRFPG-VDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTL 118
G V L + N W + G +D S I+ I+VV EFPHDP AFTQGLLYA NDTL
Sbjct: 40 PLALFSGAVFLFFMPFNSWGQSSGSLDLSHRIHEIEVVAEFPHDPDAFTQGLLYAGNDTL 99
Query: 119 FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178
FESTGLYG+SSVR+V L TGKVE I +M SYFGEGLTLLGE+LFQV WL TGF YD
Sbjct: 100 FESTGLYGKSSVRKVDLRTGKVEVIEKMGNSYFGEGLTLLGERLFQVAWLTNTGFTYDIR 159
Query: 179 NLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL 238
+L+K++ F H MKDGWGLATDG+VLFGSDG+S LY++DP+T+KV K VRY G EVR L
Sbjct: 160 DLSKVKPFKHHMKDGWGLATDGEVLFGSDGTSTLYRMDPRTMKVTNKHTVRYNGYEVRYL 219
Query: 239 NELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWD 298
NELE+I EVWANVWQ+DCIARIS +DG +LGW+LLP LR+ L+ +G+ GIDVLNGIAWD
Sbjct: 220 NELEYINKEVWANVWQSDCIARISPKDGSLLGWILLPKLRQGLLKSGHGGIDVLNGIAWD 279
Query: 299 SNRNRIFVTGKLWPKLYEINLREMKRERKDGFNVDTIIEQLCLL 342
S++ R+FVTGKLWPKLY+I L++ K G IEQ CL+
Sbjct: 280 SDKQRLFVTGKLWPKLYQIKLKQA--SAKSG----KYIEQQCLV 317
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3342798|gb|AAC27745.1| glutamine cyclotransferase precursor [Carica papaya] | Back alignment and taxonomy information |
|---|
Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 174/274 (63%), Positives = 215/274 (78%), Gaps = 5/274 (1%)
Query: 68 FVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGR 127
FV+L I + + S +Y ++V+NEFPHDP AFTQGL+YAENDTLFESTGLYGR
Sbjct: 6 FVVLLILAYGLVLTTCSRPSSRVYIVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGR 65
Query: 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187
SSVR+VAL+TGKVE I++M+ SYFGEGLTLL EKL+QV WL+ GFIYD+ L+ ++ FT
Sbjct: 66 SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFT 125
Query: 188 HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE 247
HQMKDGWGLATDGK+L+GSDG+S+LY+IDP T K+I+K V+Y G V LNELE+I GE
Sbjct: 126 HQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGE 185
Query: 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307
VWAN+WQTDCIARIS +DG +LGW+LLPNLR++L+ G+ IDVLNGIAWD RIFVT
Sbjct: 186 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT 245
Query: 308 GKLWPKLYEINLREMKRERKDGFNVDTIIEQLCL 341
GKLWPKL+EI L ++ DG+ IE+ CL
Sbjct: 246 GKLWPKLFEIKLHLVRHRIPDGY-----IERHCL 274
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Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|112491423|pdb|2IWA|A Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya. gi|116667136|pdb|2FAW|A Chain A, Crystal Structure Of Papaya Glutaminyl Cyclase gi|116667137|pdb|2FAW|B Chain B, Crystal Structure Of Papaya Glutaminyl Cyclase | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 170/255 (66%), Positives = 208/255 (81%), Gaps = 5/255 (1%)
Query: 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM 146
S +Y ++V+NEFPHDP AFTQGL+YAENDTLFESTGLYGRSSVR+VAL+TGKVE I++M
Sbjct: 3 SSRVYIVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM 62
Query: 147 EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGS 206
+ SYFGEGLTLL EKL+QV WL+ GFIYD+ L+ ++ FTHQMKDGWGLATDGK+L+GS
Sbjct: 63 DDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGS 122
Query: 207 DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDG 266
DG+S+LY+IDP T K+I+K V+Y G V LNELE+I GEVWAN+WQTDCIARIS +DG
Sbjct: 123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDG 182
Query: 267 VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRER 326
+LGW+LLPNLR++L+ G+ IDVLNGIAWD RIFVTGKLWPKL+EI L ++
Sbjct: 183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVRHRI 242
Query: 327 KDGFNVDTIIEQLCL 341
DG+ IE+ CL
Sbjct: 243 PDGY-----IERHCL 252
|
Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529143|ref|XP_003533156.1| PREDICTED: glutaminyl-peptide cyclotransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 193/341 (56%), Positives = 227/341 (66%), Gaps = 29/341 (8%)
Query: 1 MGSRSLKKKPSKRSISQSDRPAPSPSPSPSSSSSSSSSCMASNHFSRFRHYNKGIPAVML 60
MG++SLK++P + AP P P S + +S S
Sbjct: 1 MGTKSLKRRPRESQNPPMAAVAP-PRRKPRSYAKASVVLSVLLVVSVI------------ 47
Query: 61 IFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFE 120
LL +SSN + + S TI VVN FPHDP+AFTQGL+Y NDTLFE
Sbjct: 48 --------ALLVLSSN---KLRAFQRGVSYETITVVNVFPHDPQAFTQGLVYDRNDTLFE 96
Query: 121 STGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180
STGLYG+SSVR+VAL TGKVE + +M+ S FGEGLTLL +LFQVTWLQK GFIY+ NL
Sbjct: 97 STGLYGKSSVRKVALHTGKVEDVQKMDSSLFGEGLTLLNNRLFQVTWLQKAGFIYNPKNL 156
Query: 181 NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE 240
K+ F H MKDGWGLATDGKVLFGSDGSS LYQIDPQT K + K +V YKG +V NLNE
Sbjct: 157 RKIGTFNHAMKDGWGLATDGKVLFGSDGSSTLYQIDPQTFKALSKQVVHYKGHQVHNLNE 216
Query: 241 LEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSN 300
LE+I GEVWANV+ TDCI RIS DG VLGW+LL NLR+ L+ AG N IDVLNGIAWD
Sbjct: 217 LEYINGEVWANVFMTDCIVRISPSDGNVLGWILLQNLRKELIKAGNNDIDVLNGIAWDGE 276
Query: 301 RNRIFVTGKLWPKLYEINLREMKRERKDGFNVDTIIEQLCL 341
+ RIFVTGKLWPKLYEI + + + ++G IIEQLCL
Sbjct: 277 QKRIFVTGKLWPKLYEIKVSPVNKPIEEG-----IIEQLCL 312
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 346 | ||||||
| TAIR|locus:2131391 | 320 | QC "AT4G25720" [Arabidopsis th | 0.855 | 0.925 | 0.609 | 9e-93 | |
| GENEDB_PFALCIPARUM|PF14_0447 | 383 | PF14_0447 "glutaminyl-peptide | 0.277 | 0.250 | 0.361 | 4.2e-18 | |
| UNIPROTKB|Q8IL03 | 383 | PF14_0447 "Glutaminyl-peptide | 0.277 | 0.250 | 0.361 | 4.2e-18 |
| TAIR|locus:2131391 QC "AT4G25720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 186/305 (60%), Positives = 224/305 (73%)
Query: 41 ASNHFSRFRHYNKGIPAVMLIFFFLCGFVLLCISS-NMWIRFPG--VDQSPSIYTIQVVN 97
+S+ SR R ++ A+M+ L G V L N W + G +D S I I+VV
Sbjct: 22 SSSASSRRRFISRKRFAMMIPLALLSGAVFLFFMPFNSWGQSSGSSLDLSHRINEIEVVA 81
Query: 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL 157
EFPHDP AFTQGLLYA NDTLFESTGLYG+SSVR+V L TGKVE + +M+ +YFGEGLTL
Sbjct: 82 EFPHDPDAFTQGLLYAGNDTLFESTGLYGKSSVRKVDLRTGKVEILEKMDNTYFGEGLTL 141
Query: 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDP 217
LGE+LFQV WL TGF YD NL+K++ F H MKDGWGLATDGK LFGSDG+S LY++DP
Sbjct: 142 LGERLFQVAWLTNTGFTYDLRNLSKVKPFKHHMKDGWGLATDGKALFGSDGTSTLYRMDP 201
Query: 218 QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNL 277
QT+KV K IVRY GREVR LNELE+I EVWANVWQ+DCIARIS +DG +LGW+LL L
Sbjct: 202 QTMKVTDKHIVRYNGREVRYLNELEYINNEVWANVWQSDCIARISPKDGSLLGWILLSKL 261
Query: 278 RERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKDGFNVDTIIE 337
L+ +G+ GIDVLNGIAWDS++ R+FVTGKLWPKLY+I L++ K G IE
Sbjct: 262 SRGLLKSGHRGIDVLNGIAWDSDKQRLFVTGKLWPKLYQIKLKQASA--KSG----NYIE 315
Query: 338 QLCLL 342
Q CL+
Sbjct: 316 QQCLV 320
|
|
| GENEDB_PFALCIPARUM|PF14_0447 PF14_0447 "glutaminyl-peptide cyclotransferase" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 4.2e-18, Sum P(3) = 4.2e-18
Identities = 38/105 (36%), Positives = 59/105 (56%)
Query: 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE 160
H P FTQGL ++ N+TL ESTGLY S +R L +GK + +E YFGEG TL+ E
Sbjct: 104 HFP--FTQGLFFSNNETLIESTGLYNASYLREFDLLSGKTIRFHNLESKYFGEGTTLVIE 161
Query: 161 K------LFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATD 199
LF +T+ +K +++ + +++ DG+GL ++
Sbjct: 162 PSTFRKFLFVLTYKEKKILVFNYETFELYHTYYNEL-DGYGLTSN 205
|
|
| UNIPROTKB|Q8IL03 PF14_0447 "Glutaminyl-peptide cyclotransferase, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 4.2e-18, Sum P(3) = 4.2e-18
Identities = 38/105 (36%), Positives = 59/105 (56%)
Query: 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE 160
H P FTQGL ++ N+TL ESTGLY S +R L +GK + +E YFGEG TL+ E
Sbjct: 104 HFP--FTQGLFFSNNETLIESTGLYNASYLREFDLLSGKTIRFHNLESKYFGEGTTLVIE 161
Query: 161 K------LFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATD 199
LF +T+ +K +++ + +++ DG+GL ++
Sbjct: 162 PSTFRKFLFVLTYKEKKILVFNYETFELYHTYYNEL-DGYGLTSN 205
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84WV9 | QPCT_ARATH | 2, ., 3, ., 2, ., 5 | 0.5619 | 0.9104 | 0.9843 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.2 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.3.2.5 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.IV.3992.1 | hypothetical protein (264 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 346 | |||
| COG3823 | 262 | COG3823, COG3823, Glutamine cyclotransferase [Post | 2e-76 | |
| pfam05096 | 264 | pfam05096, Glu_cyclase_2, Glutamine cyclotransfera | 1e-72 |
| >gnl|CDD|226344 COG3823, COG3823, Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 2e-76
Identities = 98/231 (42%), Positives = 138/231 (59%), Gaps = 4/231 (1%)
Query: 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFG 152
+V+ +PHD +FTQGL Y + + ESTGLYG S +R L TG+ ++ + FG
Sbjct: 35 EVIRTYPHDSTSFTQGLEY-LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFG 93
Query: 153 EGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSML 212
EG+T LG+ +Q+TW + F YD + L +L F+++ +GWGL +D K L SDGS+ L
Sbjct: 94 EGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE-GEGWGLTSDDKNLIMSDGSATL 152
Query: 213 YQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWV 272
DP+T + V G V LNELE++ GE++ANVWQT IARI + G V+ W+
Sbjct: 153 QFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWI 212
Query: 273 LLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMK 323
L L + L N +VLNGIA D ++R +TGKLWP L+E+ L E
Sbjct: 213 DLSGLLKELNLDKSN-DNVLNGIAHDPQQDRFLITGKLWPLLFEVKLDEAN 262
|
Length = 262 |
| >gnl|CDD|218428 pfam05096, Glu_cyclase_2, Glutamine cyclotransferase | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 1e-72
Identities = 91/229 (39%), Positives = 131/229 (57%), Gaps = 3/229 (1%)
Query: 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG 154
V+ +PHD AFTQGL Y N + ESTG YG S VR L + FGEG
Sbjct: 35 VLRTYPHDSNAFTQGLEYLNNGHILESTGRYGFSKVRVYDLTQEIFSEKIAFPDTVFGEG 94
Query: 155 LTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQ 214
LT++ + ++ +TW + YD+ N L + ++ +GWGL D K L+ S G++ L +
Sbjct: 95 LTVVEDYVYLLTWKDGVAYKYDKATFNCLGAYPYE-GEGWGLTKDNKCLWMSSGTAFLQK 153
Query: 215 IDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLL 274
DP+T ++ V +G V LNELE++ G ++ANVWQT+ IARI + G V+ W+ +
Sbjct: 154 RDPKTFALLDTVQVTDEGVPVSMLNELEYVDGYLYANVWQTNRIARIQPDTGKVVAWIDI 213
Query: 275 PNLRERLVAAG--YNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321
L + L Y DVLNGIA D ++ R+ +TGKLWP L+E+ L E
Sbjct: 214 SPLLKELNLDKSHYPDDDVLNGIAHDLDQQRLLITGKLWPLLFEVKLTE 262
|
This family of enzymes EC:2.3.2.5 catalyze the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes. Length = 264 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 100.0 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 100.0 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.83 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.74 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.71 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.69 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.69 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.69 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.68 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.67 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.63 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 99.59 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.58 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.55 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.55 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.54 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 99.51 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.45 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 99.35 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.31 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 99.3 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.26 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.06 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 99.04 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 99.04 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.01 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 99.01 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.99 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.98 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.93 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.85 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.84 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.83 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.75 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.69 | |
| PTZ00421 | 493 | coronin; Provisional | 98.61 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.58 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.57 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.55 | |
| PTZ00420 | 568 | coronin; Provisional | 98.54 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.52 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.5 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.47 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.47 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.46 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.46 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.43 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.39 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.32 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.3 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.29 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.29 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.27 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.25 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 98.22 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.21 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 98.2 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.18 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.17 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.17 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.15 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.14 | |
| PTZ00420 | 568 | coronin; Provisional | 98.11 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.06 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 98.04 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 98.02 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.01 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 98.0 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.99 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.99 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 97.99 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 97.98 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.96 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.94 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.93 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.91 | |
| PTZ00421 | 493 | coronin; Provisional | 97.9 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.87 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.86 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.86 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 97.82 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.81 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 97.8 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.78 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.77 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.76 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 97.74 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.73 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.7 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.7 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.69 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.63 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.61 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.59 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.58 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.56 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.56 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.54 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.53 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 97.52 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 97.51 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.49 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.49 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 97.47 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.46 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 97.46 | |
| PLN02153 | 341 | epithiospecifier protein | 97.44 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.44 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 97.44 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.43 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.42 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 97.4 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.39 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 97.38 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 97.38 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.37 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 97.35 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.34 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.32 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.31 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.31 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 97.31 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 97.28 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.27 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 97.26 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.24 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 97.24 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.19 | |
| PLN02153 | 341 | epithiospecifier protein | 97.11 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 97.11 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.1 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.1 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 97.08 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.08 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 97.02 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 96.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 96.87 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.87 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 96.85 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.84 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.83 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 96.83 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.82 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.8 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 96.8 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 96.8 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 96.78 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 96.75 | |
| PLN02193 | 470 | nitrile-specifier protein | 96.74 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 96.73 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 96.72 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 96.68 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.67 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 96.66 | |
| PLN02193 | 470 | nitrile-specifier protein | 96.66 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 96.65 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.64 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 96.54 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 96.53 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 96.5 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.5 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 96.47 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 96.44 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 96.39 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 96.35 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 96.34 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.32 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 96.24 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.23 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 96.2 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.19 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 96.16 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 96.14 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 96.13 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 96.13 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 96.13 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 96.11 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 96.11 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.1 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 96.1 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 96.09 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 96.06 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 96.02 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.02 | |
| PF13970 | 333 | DUF4221: Domain of unknown function (DUF4221); PDB | 95.94 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 95.91 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 95.89 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 95.89 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 95.89 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 95.86 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 95.86 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 95.85 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 95.81 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 95.72 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 95.68 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.67 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 95.67 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 95.64 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 95.62 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 95.6 | |
| KOG3545 | 249 | consensus Olfactomedin and related extracellular m | 95.57 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 95.54 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 95.5 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.43 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 95.31 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.29 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.29 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 95.23 | |
| PF09826 | 521 | Beta_propel: Beta propeller domain; InterPro: IPR0 | 95.22 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 95.21 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 95.2 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 95.2 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 95.18 | |
| PF13970 | 333 | DUF4221: Domain of unknown function (DUF4221); PDB | 95.16 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 94.97 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 94.91 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 94.87 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 94.8 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 94.79 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 94.76 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 94.76 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 94.73 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 94.52 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 94.47 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 94.45 | |
| PF09826 | 521 | Beta_propel: Beta propeller domain; InterPro: IPR0 | 94.31 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 94.22 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.12 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 94.03 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 93.98 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 93.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 93.87 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 93.74 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 93.74 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 93.66 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 93.65 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 93.56 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 93.51 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 93.44 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 93.43 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 93.42 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 93.3 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 93.13 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.08 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 92.95 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 92.94 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 92.93 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 92.82 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 92.72 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 92.65 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 92.64 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 92.61 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 92.58 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 92.36 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 92.34 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 92.33 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 92.33 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 92.09 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 92.06 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 92.05 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 91.93 | |
| COG4880 | 603 | Secreted protein containing C-terminal beta-propel | 91.88 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 91.86 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 91.67 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 91.63 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 91.62 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.54 | |
| smart00135 | 43 | LY Low-density lipoprotein-receptor YWTD domain. T | 91.4 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 91.24 | |
| KOG1214 | 1289 | consensus Nidogen and related basement membrane pr | 91.23 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 91.21 | |
| PRK10115 | 686 | protease 2; Provisional | 91.19 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 90.97 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 90.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 90.77 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 90.75 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 90.75 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 90.62 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 90.54 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 90.5 | |
| PF14298 | 435 | DUF4374: Domain of unknown function (DUF4374) | 90.28 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 90.24 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 90.04 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 89.69 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 89.68 | |
| KOG0918 | 476 | consensus Selenium-binding protein [Inorganic ion | 89.64 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 89.52 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 89.46 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 89.21 | |
| KOG0918 | 476 | consensus Selenium-binding protein [Inorganic ion | 89.18 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 89.09 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 88.5 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 88.31 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 88.23 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 88.06 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 88.05 | |
| KOG3545 | 249 | consensus Olfactomedin and related extracellular m | 87.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 87.82 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 87.63 | |
| PF14339 | 236 | DUF4394: Domain of unknown function (DUF4394) | 87.48 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 87.43 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 87.38 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 87.37 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 87.3 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 86.85 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 86.7 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 86.44 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 86.41 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 86.33 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 86.32 | |
| PF06739 | 38 | SBBP: Beta-propeller repeat; InterPro: IPR010620 T | 86.08 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 85.72 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 85.42 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 85.2 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 84.92 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 84.91 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 84.58 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 84.34 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 84.32 | |
| PF13806 | 104 | Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A | 84.05 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 83.8 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 83.67 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 83.19 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 83.01 | |
| COG2133 | 399 | Glucose/sorbosone dehydrogenases [Carbohydrate tra | 82.93 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 82.89 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 82.19 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 82.03 | |
| KOG3522 | 925 | consensus Predicted guanine nucleotide exchange fa | 81.87 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 81.66 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 81.5 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 81.17 | |
| PF01436 | 28 | NHL: NHL repeat; InterPro: IPR001258 The NHL repea | 81.16 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 81.06 | |
| PF05787 | 524 | DUF839: Bacterial protein of unknown function (DUF | 80.01 |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-74 Score=542.61 Aligned_cols=236 Identities=54% Similarity=0.942 Sum_probs=200.4
Q ss_pred CCCCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEE
Q 019103 85 DQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQ 164 (346)
Q Consensus 85 ~~~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ 164 (346)
...+++++++|+++||||+.+|||||+|.+||+||||||+||+|+|+++|++||++++++++++++||||+++.+++|||
T Consensus 25 ~~~~~~~~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~q 104 (264)
T PF05096_consen 25 AAPAPVYSYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQ 104 (264)
T ss_dssp -----EEEEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEE
T ss_pred cCCCceeeeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEE
Confidence 35667899999999999999999999997789999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019103 165 VTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 165 ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
+||+++++|+||++|++++++|+++ .||||||+||+.|||||||++|+++||+||+++++|+|.++|+|+.+||||||+
T Consensus 105 LTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 105 LTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp EESSSSEEEEEETTTTEEEEEEE-S-SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE
T ss_pred EEecCCeEEEEccccceEEEEEecC-CcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE
Confidence 9999999999999999999999998 699999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhc--cCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019103 245 KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAA--GYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~--~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
||+||||+|++|.|++|||+||+|+++||+++|.+..... ..+..+|||||||||++++||||||+||+||||+|.+
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~e 262 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLVE 262 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEEe
Confidence 9999999999999999999999999999999888653211 1245799999999999999999999999999999975
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=481.01 Aligned_cols=232 Identities=42% Similarity=0.745 Sum_probs=218.8
Q ss_pred CceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEE
Q 019103 88 PSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVT 166 (346)
Q Consensus 88 ~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~lt 166 (346)
.+...++|+++||||..+|||||++. ||++|||||+||.|.|+++|+.+|+++...+++ ++.||||++..++.+||+|
T Consensus 29 t~~l~~evi~~yphDs~sfTQGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT 107 (262)
T COG3823 29 TKVLVYEVIRTYPHDSTSFTQGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT 107 (262)
T ss_pred ccCcceEEEEeccCchhhhhcceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE
Confidence 33445799999999999999999998 579999999999999999999999999999998 6999999999999999999
Q ss_pred eeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC
Q 019103 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG 246 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G 246 (346)
|+++..|+||++|++.+++++++ +|||||+.|++.|+||||+++|++.||+||+..++|.|..+|.|+.+||||||++|
T Consensus 108 w~egvaf~~d~~t~~~lg~~~y~-GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG 186 (262)
T COG3823 108 WKEGVAFKYDADTLEELGRFSYE-GEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDG 186 (262)
T ss_pred eccceeEEEChHHhhhhcccccC-CcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeecc
Confidence 99999999999999999999998 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~ 322 (346)
+||||+|+++.|++|||+||+|++||++++|.+.+... ....+|||||||+|+++|||+|||+||.||||+|.+.
T Consensus 187 ~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~-~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~~a 261 (262)
T COG3823 187 ELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLD-KSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLDEA 261 (262)
T ss_pred EEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCcc-ccccccccceeecCcCCeEEEecCcCceeEEEEecCC
Confidence 99999999999999999999999999999987664322 1346799999999999999999999999999999875
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-18 Score=168.67 Aligned_cols=210 Identities=11% Similarity=0.054 Sum_probs=159.6
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCC-------CCCCeEEEEECCCCcEEEEeccCCCee--------EEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGL-------YGRSSVRRVALETGKVEAINQMEGSYF--------GEGL 155 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGl-------yg~s~V~~iDl~Tgkv~~~~~l~~~~F--------geGi 155 (346)
+.+++.++|.+..| +|+ +++|| .||+++.- .+.+.|.+||++|+++++++++|+.|. .-++
T Consensus 36 ~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l 112 (352)
T TIGR02658 36 AGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL 112 (352)
T ss_pred CCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE
Confidence 68999999998888 786 99988 69999771 145799999999999999999987755 5567
Q ss_pred EEeCCEEEEEEee-CCEEEEEECCCCcEEEEEecCC-CceeE--------------------------------E-----
Q 019103 156 TLLGEKLFQVTWL-QKTGFIYDQNNLNKLEEFTHQM-KDGWG--------------------------------L----- 196 (346)
Q Consensus 156 t~~g~~LY~ltw~-~~~v~V~D~~tl~~i~ti~~~~-peGwG--------------------------------L----- 196 (346)
+.+|+.||+.++. ++.|.|+|..+++++++++++. +..+. +
T Consensus 113 s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~ 192 (352)
T TIGR02658 113 TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED 192 (352)
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCc
Confidence 7789999999999 9999999999999999998641 11111 1
Q ss_pred ---------ee-CCCEEEEECCCCeEEEEe-----CCCCcEEEEEEeccC--C-eeee-eceeeEeeCCEEEE-EecC--
Q 019103 197 ---------AT-DGKVLFGSDGSSMLYQID-----PQTLKVIRKDIVRYK--G-REVR-NLNELEFIKGEVWA-NVWQ-- 254 (346)
Q Consensus 197 ---------t~-Dg~~LyvSdGs~~l~vID-----p~T~kvi~~I~V~~~--G-~pv~-~lNELE~~~G~Lya-Nv~~-- 254 (346)
++ ||+++|+|.. ++|++|| +.+.+....+..... | +|-+ ++-.+...++++|| +...
T Consensus 193 ~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~ 271 (352)
T TIGR02658 193 EYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAK 271 (352)
T ss_pred cccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcc
Confidence 12 6778888887 8999999 555555555544321 1 1211 11012233579999 5332
Q ss_pred ------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC-EEEEecCCCCcEEEEEE
Q 019103 255 ------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN-RIFVTGKLWPKLYEINL 319 (346)
Q Consensus 255 ------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~LfVTGK~Wp~l~ev~l 319 (346)
.+.|.+||++|++++++|.+. .-+.|||++||++ +||+|+...+.|.-|..
T Consensus 272 ~thk~~~~~V~ViD~~t~kvi~~i~vG--------------~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 272 WTHKTASRFLFVVDAKTGKRLRKIELG--------------HEIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred ccccCCCCEEEEEECCCCeEEEEEeCC--------------CceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 379999999999999999772 1468999999999 99999999999998876
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-16 Score=153.89 Aligned_cols=194 Identities=13% Similarity=0.052 Sum_probs=143.2
Q ss_pred CEEEEEcCCC--CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe---------eCCEEEEEECCCCcEEE
Q 019103 116 DTLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 116 ~~LyeStGly--g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw---------~~~~v~V~D~~tl~~i~ 184 (346)
.++|++.... ..++|++||.++++++..++.+..+-+. ++.++++||+++- .++.|.|||++|++.++
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~ 91 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA 91 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence 4688887632 1279999999999999999999888775 8889999999988 89999999999999999
Q ss_pred EEecC-CCc--------eeEEeeCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEeccC-----------------Ceeee
Q 019103 185 EFTHQ-MKD--------GWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYK-----------------GREVR 236 (346)
Q Consensus 185 ti~~~-~pe--------GwGLt~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~~-----------------G~pv~ 236 (346)
+++.+ .|+ ..+|++||++|||+| . ++.|.+||.++.+++++|.|.+. |.-..
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~ 171 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAK 171 (352)
T ss_pred EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEE
Confidence 99975 334 889999999999999 4 89999999999999999999651 11111
Q ss_pred ----------ecee-e--------------Ee-eCCEEEEEecCCCeEEEEe-----CCCCeEEEEEECCchhhhhhhcc
Q 019103 237 ----------NLNE-L--------------EF-IKGEVWANVWQTDCIARIS-----HEDGVVLGWVLLPNLRERLVAAG 285 (346)
Q Consensus 237 ----------~lNE-L--------------E~-~~G~LyaNv~~sn~I~vID-----~~TG~Vv~~I~l~~l~~~~~~~~ 285 (346)
.-|. + .. .+.++|++.. +.|++|| ++.++++..+...... .+
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~-----~~ 244 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKA-----DG 244 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccc-----cc
Confidence 1111 1 01 1336888876 9999999 4555555554332111 11
Q ss_pred C-CCCceeeEEEEeCCCCEEEE-ecCCC--------CcEEEEEE
Q 019103 286 Y-NGIDVLNGIAWDSNRNRIFV-TGKLW--------PKLYEINL 319 (346)
Q Consensus 286 ~-~~~~vlNGIA~d~~~~~LfV-TGK~W--------p~l~ev~l 319 (346)
. |.+ +.+||++++++++|| ..+.- +.+..|..
T Consensus 245 wrP~g--~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 245 WRPGG--WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred cCCCc--ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 1 222 122999999999999 44333 57777776
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-15 Score=141.88 Aligned_cols=212 Identities=7% Similarity=0.060 Sum_probs=149.8
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECC-CCcE--EEEeccCCCeeEEEEEEeCCEEEEEEe
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALE-TGKV--EAINQMEGSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~-Tgkv--~~~~~l~~~~FgeGit~~g~~LY~ltw 167 (346)
++++++++++...+ ++|++++|+ .||+++. ....|..|+.+ +|++ +..++.+..+-+..+..+++.||++++
T Consensus 24 ~l~~~~~~~~~~~~--~~l~~spd~~~lyv~~~--~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~ 99 (330)
T PRK11028 24 ALTLLQVVDVPGQV--QPMVISPDKRHLYVGVR--PEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY 99 (330)
T ss_pred ceeeeeEEecCCCC--ccEEECCCCCEEEEEEC--CCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc
Confidence 56788888876555 699999988 5899876 56799999886 5654 455566656655555556889999999
Q ss_pred eCCEEEEEECCC-C---cEEEEEec-CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEE-------EEEeccCCee
Q 019103 168 LQKTGFIYDQNN-L---NKLEEFTH-QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIR-------KDIVRYKGRE 234 (346)
Q Consensus 168 ~~~~v~V~D~~t-l---~~i~ti~~-~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~-------~I~V~~~G~p 234 (346)
.++.+.+||.++ . +.+..++. +.|.+..++|||+++|++| +++.|.++|.++...+. ++.++. .|
T Consensus 100 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~--~p 177 (330)
T PRK11028 100 NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA--GP 177 (330)
T ss_pred CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC--CC
Confidence 999999999863 2 33444443 2468888999999999988 78999999987743221 222332 24
Q ss_pred eeeceeeEee--CCEEEEEecCCCeEEEEeCC--CCeE--EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 235 VRNLNELEFI--KGEVWANVWQTDCIARISHE--DGVV--LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 235 v~~lNELE~~--~G~LyaNv~~sn~I~vID~~--TG~V--v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
.+ +.+. +.++||.++.+++|.++|.+ +|+. +..+.. + +. ..+....+.+|+++|++++|||++
T Consensus 178 ~~----~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~--~-p~----~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 178 RH----MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM--M-PA----DFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred ce----EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec--C-CC----cCCCCccceeEEECCCCCEEEEec
Confidence 32 4444 34899999999999999886 4543 444432 1 10 011122456899999999999999
Q ss_pred CCCCcEEEEEEe
Q 019103 309 KLWPKLYEINLR 320 (346)
Q Consensus 309 K~Wp~l~ev~l~ 320 (346)
...+.|..+++.
T Consensus 247 ~~~~~I~v~~i~ 258 (330)
T PRK11028 247 RTASLISVFSVS 258 (330)
T ss_pred CCCCeEEEEEEe
Confidence 989988887764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-15 Score=147.72 Aligned_cols=197 Identities=14% Similarity=0.123 Sum_probs=164.9
Q ss_pred CcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe--eCCEEEEEECCCCc
Q 019103 105 AFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW--LQKTGFIYDQNNLN 181 (346)
Q Consensus 105 ~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw--~~~~v~V~D~~tl~ 181 (346)
...+|+++.+++ ++|+.+. +.+.|.++|.++.++...+.++..+.+..++.+++.+|+++- .++.+.++|.++.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~--~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTG--DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecC--CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 556899998877 5999998 567999999999999999999988878777888999999998 68999999999999
Q ss_pred EEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEE-E----EEeccCCeeeeeceeeEeeCCEEEEEecC
Q 019103 182 KLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIR-K----DIVRYKGREVRNLNELEFIKGEVWANVWQ 254 (346)
Q Consensus 182 ~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~-~----I~V~~~G~pv~~lNELE~~~G~LyaNv~~ 254 (346)
++++++++ .|.|.+++++|+.+|++| +++.|++||+++.++.+ + +.++. .|.. ..+..++.++||.+..
T Consensus 152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~--~P~~--i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT--GPAG--IAVDPDGNRVYVANDG 227 (381)
T ss_pred EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC--CCce--EEECCCCCEEEEEecc
Confidence 99999987 688999999999999999 79999999999988874 2 44433 3332 1233445689999988
Q ss_pred C--CeEEEEeCCCCeEEEE-EECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 255 T--DCIARISHEDGVVLGW-VLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 255 s--n~I~vID~~TG~Vv~~-I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+ +.+.+||.+++.+.++ +.. ..+ .+-|++.+|+++.+||+...-+.++.|...
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~------------~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPV------------GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred CCCceEEEEeCCCceEEEecccc------------ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 7 6999999999999888 322 112 467899999999999999999999998864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.3e-15 Score=141.01 Aligned_cols=210 Identities=9% Similarity=0.042 Sum_probs=145.2
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCC-CcE---EEEeccCCCeeEEEEEEeCCEEEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALET-GKV---EAINQMEGSYFGEGLTLLGEKLFQVT 166 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~T-gkv---~~~~~l~~~~FgeGit~~g~~LY~lt 166 (346)
+++.+++++....+ .+++++++++ ||+++- +++.|.+||+++ |.+ +....-...+.+..++++++.+|+++
T Consensus 69 ~l~~~~~~~~~~~p--~~i~~~~~g~~l~v~~~--~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 69 ALTFAAESPLPGSP--THISTDHQGRFLFSASY--NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred ceEEeeeecCCCCc--eEEEECCCCCEEEEEEc--CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee
Confidence 35677777775555 6999999885 777753 678999999974 432 22222223444555556678999999
Q ss_pred eeCCEEEEEECCCCcEEE-------EEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCC--C--CcEEEEEEeccCC-
Q 019103 167 WLQKTGFIYDQNNLNKLE-------EFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--T--LKVIRKDIVRYKG- 232 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~-------ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~--T--~kvi~~I~V~~~G- 232 (346)
+.++.|.|||.++...+. +++.+ .|.+..+++||++||++| ++++|.++|.+ + ++.+.++.....+
T Consensus 145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 145 LKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred CCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 999999999997743331 23333 578889999999999998 49999999865 3 3444444332110
Q ss_pred -eeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCC----eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019103 233 -REVRNLNELEFI--KGEVWANVWQTDCIARISHEDG----VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 233 -~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG----~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
.+ ....++.+. +.++||.+...+.|.++|.++. ++++.++. +..|.+++++|++++||
T Consensus 225 ~~~-~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--------------~~~p~~~~~~~dg~~l~ 289 (330)
T PRK11028 225 SDT-RWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--------------ETQPRGFNIDHSGKYLI 289 (330)
T ss_pred CCC-ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--------------cccCCceEECCCCCEEE
Confidence 11 122234433 4579999998999999987442 35555543 12467899999999999
Q ss_pred EecCCCCcEEEEEEe
Q 019103 306 VTGKLWPKLYEINLR 320 (346)
Q Consensus 306 VTGK~Wp~l~ev~l~ 320 (346)
|++...++|...++.
T Consensus 290 va~~~~~~v~v~~~~ 304 (330)
T PRK11028 290 AAGQKSHHISVYEID 304 (330)
T ss_pred EEEccCCcEEEEEEc
Confidence 999888877777664
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-14 Score=129.41 Aligned_cols=211 Identities=17% Similarity=0.209 Sum_probs=155.7
Q ss_pred eEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
-+.+.+++....+ .++.+++|+. +|++.+ +++.|.+||+.+++.+..++.+..+....+..+++.+|++...++.
T Consensus 21 ~~~~~~~~~~~~~--~~l~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 96 (300)
T TIGR03866 21 LEVTRTFPVGQRP--RGITLSKDGKLLYVCAS--DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNL 96 (300)
T ss_pred CceEEEEECCCCC--CceEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCe
Confidence 3456666654445 5899999884 778766 5679999999999988877655544333344456789999888899
Q ss_pred EEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-C-CE
Q 019103 172 GFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K-GE 247 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~-G~ 247 (346)
+.++|..+.+.+.+++.+ .+.+..+++||+.++++.. .+.++++|+++++.+..+.++. .+ +.+.+. + .+
T Consensus 97 l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~----~~~~~s~dg~~ 170 (300)
T TIGR03866 97 VTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ--RP----RFAEFTADGKE 170 (300)
T ss_pred EEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC--Cc----cEEEECCCCCE
Confidence 999999999999999864 4678889999999988764 5678889999999888776643 23 224443 3 46
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+|++....+.|.++|.++++++..++... ... .+....+.+|+|+|+++.+|++...-+++..+.+
T Consensus 171 l~~~~~~~~~v~i~d~~~~~~~~~~~~~~-~~~-----~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 171 LWVSSEIGGTVSVIDVATRKVIKKITFEI-PGV-----HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred EEEEcCCCCEEEEEEcCcceeeeeeeecc-ccc-----ccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 88887778899999999999999886521 100 0122356789999999999998654456665554
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-15 Score=148.81 Aligned_cols=212 Identities=19% Similarity=0.188 Sum_probs=145.1
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
+.++++++|....+ -.++.+++||+ +|+++. ++.|.+||+.+++++++++.+..+.+..++.+|+.+|++++.++
T Consensus 25 t~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~r---dg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~ 100 (369)
T PF02239_consen 25 TNKVVARIPTGGAP-HAGLKFSPDGRYLYVANR---DGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPG 100 (369)
T ss_dssp T-SEEEEEE-STTE-EEEEE-TT-SSEEEEEET---TSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETT
T ss_pred CCeEEEEEcCCCCc-eeEEEecCCCCEEEEEcC---CCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCC
Confidence 67899999985444 35788999885 899853 35999999999999999999999888777889999999999999
Q ss_pred EEEEEECCCCcEEEEEecC-----------------------------------------------------CCceeEEe
Q 019103 171 TGFIYDQNNLNKLEEFTHQ-----------------------------------------------------MKDGWGLA 197 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~-----------------------------------------------------~peGwGLt 197 (346)
.+.|+|++|++++++++.+ .+++-+++
T Consensus 101 ~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~d 180 (369)
T PF02239_consen 101 TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFD 180 (369)
T ss_dssp EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-
T ss_pred ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccC
Confidence 9999999999998876532 12222334
Q ss_pred eCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE---------EecCCCeEEEEeCCCCe
Q 019103 198 TDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA---------NVWQTDCIARISHEDGV 267 (346)
Q Consensus 198 ~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya---------Nv~~sn~I~vID~~TG~ 267 (346)
+||+++++ ++++|.|.++|+++++++..+.++...+|..-.|--.+.-|-+|+ ....++.+.++|..+.+
T Consensus 181 pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk 260 (369)
T PF02239_consen 181 PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK 260 (369)
T ss_dssp TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe
Confidence 44678888 468999999999999999999997654443333322122234443 33456677788999999
Q ss_pred EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe---cCCCCcEEEEEEee
Q 019103 268 VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT---GKLWPKLYEINLRE 321 (346)
Q Consensus 268 Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT---GK~Wp~l~ev~l~~ 321 (346)
++.+|++.+ .+-.|+.+|+++.+||. |..+++|.-|....
T Consensus 261 vv~~I~~~G--------------~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 261 VVKTIPTQG--------------GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp EEEEEE-SS--------------SS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred EEEEEECCC--------------CcceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 999998732 12568999999999999 88899999998754
|
... |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.2e-14 Score=127.88 Aligned_cols=223 Identities=17% Similarity=0.172 Sum_probs=159.0
Q ss_pred EEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v 172 (346)
+++.+++....+ ..+.+++++ .+|++++ ++..|.+||+.+++.+..++.+..+.+..++++++.++......+.+
T Consensus 64 ~~~~~~~~~~~~--~~~~~~~~g~~l~~~~~--~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~ 139 (300)
T TIGR03866 64 EVIGTLPSGPDP--ELFALHPNGKILYIANE--DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMA 139 (300)
T ss_pred cEEEeccCCCCc--cEEEECCCCCEEEEEcC--CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeE
Confidence 455566554444 578898887 4888876 45699999999998888777655444444445566777666666678
Q ss_pred EEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCe---eeeeceeeEee--C
Q 019103 173 FIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGR---EVRNLNELEFI--K 245 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~---pv~~lNELE~~--~ 245 (346)
.++|.++++.+..+..+ .+.+..+++||++||++. .++.|+++|.++++.++++.....+. .+ ..-.+.+. +
T Consensus 140 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~s~dg 218 (300)
T TIGR03866 140 HFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAV-QPVGIKLTKDG 218 (300)
T ss_pred EEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccC-CccceEECCCC
Confidence 88999999888877654 466777899999998865 57899999999999988876432111 11 11123333 3
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec--c
Q 019103 246 GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM--K 323 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~--~ 323 (346)
.++|++....+.|.++|.++++++..+... ..+.+++|+|++++||+++..-++|..+++... .
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTYEVLDYLLVG--------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCcEEEEEEeC--------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 468988877889999999999998776431 135789999999999999888888888877532 2
Q ss_pred ccccCCCchhHH
Q 019103 324 RERKDGFNVDTI 335 (346)
Q Consensus 324 ~~~~~~~~~~~~ 335 (346)
+..+-|+..|.+
T Consensus 285 ~~~~~~~~~~~~ 296 (300)
T TIGR03866 285 KSIKVGRLPWGV 296 (300)
T ss_pred EEEEccccccee
Confidence 344455555544
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-14 Score=140.53 Aligned_cols=186 Identities=16% Similarity=0.094 Sum_probs=132.2
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE-EEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCcee
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG-EGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGW 194 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg-eGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGw 194 (346)
.+|+..- ++++|.++|.+|.+++++++.+..+.+ .-++.+++.+|+++ +++.+.+||+.+++++++++++ .+.|.
T Consensus 7 l~~V~~~--~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 7 LFYVVER--GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp EEEEEEG--GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred EEEEEec--CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-CCCeEEEEECCcccEEEEEecCCCcceE
Confidence 4556654 677999999999999999998766522 22345788999997 5799999999999999999997 67888
Q ss_pred EEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCe--eeeeceee-EeeCC-EEEEEecCCCeEEEEeCCCCe--
Q 019103 195 GLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGR--EVRNLNEL-EFIKG-EVWANVWQTDCIARISHEDGV-- 267 (346)
Q Consensus 195 GLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~--pv~~lNEL-E~~~G-~LyaNv~~sn~I~vID~~TG~-- 267 (346)
++++||+++|++| ..+++.++|++|++++++|+++.... +-.+...+ +...+ +..+|+..++.|.++|..+.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 8999999999999 59999999999999999999964210 11111222 22233 455788989999999988765
Q ss_pred EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 268 VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 268 Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.+..++. +..|++..+||+++.++++...-++|--+++
T Consensus 164 ~~~~i~~--------------g~~~~D~~~dpdgry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 164 KVTTIKV--------------GRFPHDGGFDPDGRYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp EEEEEE----------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred ceeeecc--------------cccccccccCcccceeeecccccceeEEEee
Confidence 3345543 2368999999999999998777777776664
|
... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-13 Score=134.01 Aligned_cols=212 Identities=17% Similarity=0.136 Sum_probs=166.9
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeC
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQ 169 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~ 169 (346)
+.++..+++....+ .|+.+.+++ .+|+... +.+.+..++....++......+ ..+-+..+...+.++|+.+...
T Consensus 20 ~~~~~~~~~~~~~~--~~v~~~~~g~~~~v~~~--~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~ 95 (381)
T COG3391 20 TNKVTAAISLGRGP--GGVAVNPDGTQVYVANS--GSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS 95 (381)
T ss_pred ccEEEEEeecCCCC--ceeEEcCccCEEEEEee--cCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCC
Confidence 56677777654545 799999888 7998876 3448999998877777766666 3333334444789999999999
Q ss_pred CEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECC---CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC
Q 019103 170 KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDG---SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdG---s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~ 245 (346)
+.+.|+|.++.+..++++.+ .|.|.++++|++.+||+|. ++++++||++|.++++++.++.. |... .+...+
T Consensus 96 ~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~--P~~~--a~~p~g 171 (381)
T COG3391 96 NTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT--PTGV--AVDPDG 171 (381)
T ss_pred CeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC--cceE--EECCCC
Confidence 99999999999999999987 7999999999999999984 68999999999999999999874 3220 122334
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEE-EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC--CcEEEEEEee
Q 019103 246 GEVWANVWQTDCIARISHEDGVVLG-WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW--PKLYEINLRE 321 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~-~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W--p~l~ev~l~~ 321 (346)
.++|+.+..++.|++||+++..+.. .... ....+..|.|++++++++++||+...- .+++.+....
T Consensus 172 ~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~----------~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 172 NKVYVTNSDDNTVSVIDTSGNSVVRGSVGS----------LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred CeEEEEecCCCeEEEEeCCCcceecccccc----------ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 5799999899999999999988874 2211 013355789999999999999999887 5888888753
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-12 Score=128.42 Aligned_cols=213 Identities=14% Similarity=0.180 Sum_probs=149.1
Q ss_pred eeEEEEEEec-CCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCC-CcEEEEec--------------cCCCeeEEE
Q 019103 92 TIQVVNEFPH-DPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALET-GKVEAINQ--------------MEGSYFGEG 154 (346)
Q Consensus 92 t~~Vv~t~ph-d~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~T-gkv~~~~~--------------l~~~~FgeG 154 (346)
+++.+++.+. +..| -.+++++++ .||+++ |+.+.|.+++++. |++..... ..+.+....
T Consensus 75 ~L~~~~~~~~~g~~p--~~i~~~~~g~~l~van--y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~ 150 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSP--CHIAVDPDGRFLYVAN--YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV 150 (345)
T ss_dssp EEEEEEEEEESSSCE--EEEEECTTSSEEEEEE--TTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred eeEEeeeeccCCCCc--EEEEEecCCCEEEEEE--ccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEE
Confidence 6888999985 3334 689999888 588886 4778999999987 66655431 123333444
Q ss_pred EEEeCCEEEEEEeeCCEEEEEECCCC----cEEEEEec--C-CCceeEEeeCCCEEEEEC-CCCeEEEEeCC--C--CcE
Q 019103 155 LTLLGEKLFQVTWLQKTGFIYDQNNL----NKLEEFTH--Q-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--T--LKV 222 (346)
Q Consensus 155 it~~g~~LY~ltw~~~~v~V~D~~tl----~~i~ti~~--~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~--T--~kv 222 (346)
++++++.+|+.+...++|++|+.++. +....+.. + .|.+..+++||+++|+.+ .+++|.+++.. + ++.
T Consensus 151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~ 230 (345)
T PF10282_consen 151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE 230 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE
Confidence 45567899999999999999998653 33445543 3 577888999999999987 59999999876 3 445
Q ss_pred EEEEEeccCCee-eeeceeeEee-CC-EEEEEecCCCeEEEEeC--CCCeE--EEEEECCchhhhhhhccCCCCceeeEE
Q 019103 223 IRKDIVRYKGRE-VRNLNELEFI-KG-EVWANVWQTDCIARISH--EDGVV--LGWVLLPNLRERLVAAGYNGIDVLNGI 295 (346)
Q Consensus 223 i~~I~V~~~G~p-v~~lNELE~~-~G-~LyaNv~~sn~I~vID~--~TG~V--v~~I~l~~l~~~~~~~~~~~~~vlNGI 295 (346)
+.++.....+.. -....++... || +|||++-..|.|++++. ++|++ +..++. .+..|.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-------------~G~~Pr~~ 297 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-------------GGKFPRHF 297 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-------------SSSSEEEE
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-------------CCCCccEE
Confidence 556655322111 1133455554 44 89999999999888886 55654 344432 23468999
Q ss_pred EEeCCCCEEEEecCCCCcEEEEEEee
Q 019103 296 AWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 296 A~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
+++|+++.|||+++..+.|...++.+
T Consensus 298 ~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 298 AFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 99999999999999999998887753
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-12 Score=125.24 Aligned_cols=216 Identities=14% Similarity=0.156 Sum_probs=149.2
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCCC-CCCeEEEEECCC--Cc--EEEEec-cCCCeeEEEEEEeCCEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLY-GRSSVRRVALET--GK--VEAINQ-MEGSYFGEGLTLLGEKLFQ 164 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGly-g~s~V~~iDl~T--gk--v~~~~~-l~~~~FgeGit~~g~~LY~ 164 (346)
+++.+..++....| .-|++++++ .||.++... +...|..|+... |+ .+.+.. .+..+-...++.+++.||+
T Consensus 26 ~l~~~~~~~~~~~P--s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 26 TLTLVQTVAEGENP--SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp EEEEEEEEEESSSE--CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEE
T ss_pred CceEeeeecCCCCC--ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEE
Confidence 56667777666666 689999877 699887643 567888877654 54 445555 4555544444447899999
Q ss_pred EEeeCCEEEEEECCC-CcEEEE---Eec------------CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCc--E--E
Q 019103 165 VTWLQKTGFIYDQNN-LNKLEE---FTH------------QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLK--V--I 223 (346)
Q Consensus 165 ltw~~~~v~V~D~~t-l~~i~t---i~~------------~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~k--v--i 223 (346)
+++.++.+.+|+.++ +++... +.+ ..+....++|||++||++| |.+.|++++..+.+ + .
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~ 183 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPV 183 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEE
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEe
Confidence 999999999999876 444333 211 1244667899999999999 89999998865533 4 4
Q ss_pred EEEEeccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCC--CCeE--EEEEECCchhhhhhhccCCCCceeeEEEE
Q 019103 224 RKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHE--DGVV--LGWVLLPNLRERLVAAGYNGIDVLNGIAW 297 (346)
Q Consensus 224 ~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~--TG~V--v~~I~l~~l~~~~~~~~~~~~~vlNGIA~ 297 (346)
..+.+.....|.+ |.+. +.++|+.+..++.|.+++.. +|+. +.++.. +.. +......+.+|++
T Consensus 184 ~~~~~~~G~GPRh----~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~--~~~-----~~~~~~~~~~i~i 252 (345)
T PF10282_consen 184 DSIKVPPGSGPRH----LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST--LPE-----GFTGENAPAEIAI 252 (345)
T ss_dssp EEEECSTTSSEEE----EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES--CET-----TSCSSSSEEEEEE
T ss_pred eccccccCCCCcE----EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee--ccc-----cccccCCceeEEE
Confidence 4555544445766 5555 34899999999999999888 6653 344433 211 1222347899999
Q ss_pred eCCCCEEEEecCCCCcEEEEEEe
Q 019103 298 DSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 298 d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+|++++|||+++.-+.|.-.++.
T Consensus 253 spdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 253 SPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp -TTSSEEEEEECTTTEEEEEEEC
T ss_pred ecCCCEEEEEeccCCEEEEEEEe
Confidence 99999999999999998777774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-12 Score=144.70 Aligned_cols=203 Identities=17% Similarity=0.130 Sum_probs=141.5
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEecc-----------------CCCeeEEEEEEe--CCEEEEEEe
Q 019103 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQM-----------------EGSYFGEGLTLL--GEKLFQVTW 167 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-----------------~~~~FgeGit~~--g~~LY~ltw 167 (346)
+|+++++++ .||++.. +...|++||+.++++..-..- -..| .|++++ ++.+|++++
T Consensus 627 ~GIavd~~gn~LYVaDt--~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P--~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADT--ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSP--WDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred cEEEEeCCCCEEEEEeC--CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCC--eEEEEecCCCeEEEEEC
Confidence 799999765 6999976 567999999999876432110 0123 345554 689999999
Q ss_pred eCCEEEEEECCCCcEEEEEe-----------------cCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEec
Q 019103 168 LQKTGFIYDQNNLNKLEEFT-----------------HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 168 ~~~~v~V~D~~tl~~i~ti~-----------------~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~ 229 (346)
.++.|+++|..+.... ++. ...|.|.++++||++||++| ++++|.++|+++.... +.++
T Consensus 703 ~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~--~~~g 779 (1057)
T PLN02919 703 GQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR--LLAG 779 (1057)
T ss_pred CCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE--EEEe
Confidence 9999999999876543 111 11477888999999999999 5899999999987652 2221
Q ss_pred cC--------------Ce----eeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhh-hhccCCCC
Q 019103 230 YK--------------GR----EVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERL-VAAGYNGI 289 (346)
Q Consensus 230 ~~--------------G~----pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~-~~~~~~~~ 289 (346)
.+ |. .+.++..+.+. +|.|||+.+..+.|.+||++++++....-... .+.. +.......
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~-~G~~dG~~~~a~l 858 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK-AGFKDGKALKAQL 858 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC-cCCCCCccccccc
Confidence 10 10 01122335454 68899999999999999999999876553311 0000 00001124
Q ss_pred ceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 290 DVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 290 ~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+.|+|||++++|+ +||+....+.|..+.+
T Consensus 859 ~~P~GIavd~dG~-lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 859 SEPAGLALGENGR-LFVADTNNSLIRYLDL 887 (1057)
T ss_pred CCceEEEEeCCCC-EEEEECCCCEEEEEEC
Confidence 5799999999885 9999988888887766
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-12 Score=117.01 Aligned_cols=177 Identities=16% Similarity=0.271 Sum_probs=127.2
Q ss_pred eeEEEe-cCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc--C--CCeeEEEEEEe-CCEEEEEEeeC--------CEEE
Q 019103 108 QGLLYA-ENDTLFESTGLYGRSSVRRVALETGKVEAINQM--E--GSYFGEGLTLL-GEKLFQVTWLQ--------KTGF 173 (346)
Q Consensus 108 qGL~~~-~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l--~--~~~FgeGit~~-g~~LY~ltw~~--------~~v~ 173 (346)
.|+.+. +++.||++.. ..+.++|+++|++...... + +..+.-.++++ .++||+.+-.. +.++
T Consensus 43 ~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 43 NGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEECTTSEEEEEET----TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEE
T ss_pred ceEEEEccCCEEEEEEc----CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceE
Confidence 699999 7899999965 3667779999987666655 2 33445556664 36799987543 6799
Q ss_pred EEECCCCcEEEEEe-cCCCceeEEeeCCCEEEEEC-CCCeEEEEeCC--CCcEEEEEEe---ccC-CeeeeeceeeEee-
Q 019103 174 IYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--TLKVIRKDIV---RYK-GREVRNLNELEFI- 244 (346)
Q Consensus 174 V~D~~tl~~i~ti~-~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~--T~kvi~~I~V---~~~-G~pv~~lNELE~~- 244 (346)
.+|++ .+...-+. ...|.|.++++|++.||++| ..++|+.+|.. +.++..+-.+ ... |.|- -|.++
T Consensus 119 ~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pD----G~~vD~ 193 (246)
T PF08450_consen 119 RIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPD----GLAVDS 193 (246)
T ss_dssp EEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEE----EEEEBT
T ss_pred EECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCC----cceEcC
Confidence 99998 55433332 23689999999999999999 58899999975 3434322222 111 2343 36665
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEE-eCCCCEEEEe
Q 019103 245 KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAW-DSNRNRIFVT 307 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~-d~~~~~LfVT 307 (346)
+|.||++.|..+.|.++||+ |+++..|.++ . ..|..+|| -++.++||||
T Consensus 194 ~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~------------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 194 DGNLWVADWGGGRIVVFDPD-GKLLREIELP-V------------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TS-EEEEEETTTEEEEEETT-SCEEEEEE-S-S------------SSEEEEEEESTTSSEEEEE
T ss_pred CCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-C------------CCEEEEEEECCCCCEEEEE
Confidence 68999999999999999999 9999999873 1 14677999 4688999998
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=140.84 Aligned_cols=184 Identities=14% Similarity=0.120 Sum_probs=145.6
Q ss_pred cCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee------------------------
Q 019103 114 ENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------------------------ 168 (346)
Q Consensus 114 ~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~------------------------ 168 (346)
+||+ +++. .. -.+.+++||.+|.++..++.+++++....++.+|+.+|+....
T Consensus 202 nDGk~l~~~-~e-y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 202 NDGKDLDDP-KK-YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCEeecc-cc-eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 3554 4444 32 4579999999999999999999998888888889999988532
Q ss_pred ---------------CCEEEEEECCC-----CcEEEEEecC-CCceeEEeeCCCEEEEECC-CCeEEEEeCCCCc-----
Q 019103 169 ---------------QKTGFIYDQNN-----LNKLEEFTHQ-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLK----- 221 (346)
Q Consensus 169 ---------------~~~v~V~D~~t-----l~~i~ti~~~-~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~k----- 221 (346)
.++|.|+|..+ .+++..|+++ .|.|..++|||+++|++++ |++++|||.++++
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 27899999999 7999999998 7899999999999999996 9999999999988
Q ss_pred -------EEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCC----------CeEEEEEECCchhhhhhh
Q 019103 222 -------VIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHED----------GVVLGWVLLPNLRERLVA 283 (346)
Q Consensus 222 -------vi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~T----------G~Vv~~I~l~~l~~~~~~ 283 (346)
++++++||.. |++ .+|+ +|..|.+.+.++.|++.|.++ ..|+.++|+. -.+..
T Consensus 360 ~~~~~~~vvaevevGlG--PLH----TaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~-y~pgh-- 430 (635)
T PRK02888 360 KIKPRDAVVAEPELGLG--PLH----TAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVH-YQPGH-- 430 (635)
T ss_pred cCCccceEEEeeccCCC--cce----EEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCC-Cccce--
Confidence 5899999773 655 5566 468999999999999999998 6799999883 22221
Q ss_pred ccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019103 284 AGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 284 ~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
.....|=.-+|+|+.|++-+|..-.
T Consensus 431 -----~~~~~g~t~~~dgk~l~~~nk~skd 455 (635)
T PRK02888 431 -----NHASMGETKEADGKWLVSLNKFSKD 455 (635)
T ss_pred -----eeecCCCcCCCCCCEEEEccccccc
Confidence 1122333456788887777776543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-11 Score=113.24 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=119.0
Q ss_pred eEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019103 151 FGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 151 FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
||||.+.+ .+.||.++-..++++.+|+++.+. ..+..+.|.|..+..+++.||+++.. .+.++|+++.++..-...
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-~~~~~~~~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-EVIDLPGPNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEEESSSEEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCeE-EEEecCCCceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 68999998 589999999999999999988755 33555447777777566999999864 445559999987666655
Q ss_pred ccCCeeeeeceeeEee-CCEEEEEecCC--------CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeC
Q 019103 229 RYKGREVRNLNELEFI-KGEVWANVWQT--------DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDS 299 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~-~G~LyaNv~~s--------n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~ 299 (346)
...+.+...+|.+.+. +|.+|++.-.. ..|.++|+. +++...++ + ...||||||+|
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~------------~~~pNGi~~s~ 143 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--G------------LGFPNGIAFSP 143 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--E------------ESSEEEEEEET
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--C------------cccccceEECC
Confidence 3333367788999887 68999987543 469999999 88655442 1 23689999999
Q ss_pred CCCEEEEecCCCCcEEEEEEe
Q 019103 300 NRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 300 ~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+++.|||+.-.-.+|+++.+.
T Consensus 144 dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 144 DGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp TSSEEEEEETTTTEEEEEEEE
T ss_pred cchheeecccccceeEEEecc
Confidence 999999999999999999985
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=126.36 Aligned_cols=188 Identities=15% Similarity=0.154 Sum_probs=139.5
Q ss_pred CCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe---------------------eEEEEEEeCCEEEEEEeeCCEE
Q 019103 115 NDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSY---------------------FGEGLTLLGEKLFQVTWLQKTG 172 (346)
Q Consensus 115 d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~---------------------FgeGit~~g~~LY~ltw~~~~v 172 (346)
||+ ||+-.- ...+|-+||+++.|..+.+.+|... |..=+..+|+.++......+.+
T Consensus 140 dGr~~findk--~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 140 DGRYLFINDK--ANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ceeEEEEecC--CCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEE
Confidence 354 554422 4579999999998877776665321 2222222455677778888999
Q ss_pred EEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC----CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-
Q 019103 173 FIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD----GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG- 246 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd----Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G- 246 (346)
.++|++++++..++.++ .|++..+++||+++|++. ...++..+|..+...+..+.+. + +.++ ..+|
T Consensus 218 SvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~-----iea~-vkdGK 289 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--R-----IEEA-VKAGK 289 (635)
T ss_pred EEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--H-----HHHh-hhCCC
Confidence 99999999999999996 689999999999999984 3678999998776643333331 1 1112 2244
Q ss_pred EEEEEecCCCeEEEEeCCC-----CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019103 247 EVWANVWQTDCIARISHED-----GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~T-----G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
+.|++ .|.|.|||.++ .+++..|+++ .-|.|++++|||+.+|||||+.|++.-|.+.-
T Consensus 290 ~~~V~---gn~V~VID~~t~~~~~~~v~~yIPVG--------------KsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 290 FKTIG---GSKVPVVDGRKAANAGSALTRYVPVP--------------KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred EEEEC---CCEEEEEECCccccCCcceEEEEECC--------------CCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 57763 78999999999 5899999772 25799999999999999999999999999987
Q ss_pred ccccccCC
Q 019103 322 MKRERKDG 329 (346)
Q Consensus 322 ~~~~~~~~ 329 (346)
++.-+++.
T Consensus 353 ~k~~~~~~ 360 (635)
T PRK02888 353 LDDLFDGK 360 (635)
T ss_pred hhhhhhcc
Confidence 66655544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.7e-10 Score=123.77 Aligned_cols=208 Identities=13% Similarity=0.063 Sum_probs=139.0
Q ss_pred CcceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCC----------e--eEEEEEEe--CCEEEEEEee
Q 019103 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGS----------Y--FGEGLTLL--GEKLFQVTWL 168 (346)
Q Consensus 105 ~FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~----------~--FgeGit~~--g~~LY~ltw~ 168 (346)
.|..|+++++ ++.||++.- +.++|+++|+. |+++..+.- +.. . .+.|++++ ++.||+++..
T Consensus 568 ~~P~gvavd~~~g~lyVaDs--~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDS--NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred CCCceEEEECCCCeEEEEEC--CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 5678999986 478999965 77899999986 555444422 111 1 14667775 6789999999
Q ss_pred CCEEEEEECCCCcEEEEEe-------------------cCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEe
Q 019103 169 QKTGFIYDQNNLNKLEEFT-------------------HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~-------------------~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V 228 (346)
++.|.+||..+.. +.++. ...|.|..++++++.||++| +.++|+++|+.+..+. .+.-
T Consensus 645 n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G 722 (1057)
T PLN02919 645 NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG 722 (1057)
T ss_pred CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence 9999999988754 33331 11356667778889999999 6889999999887653 1111
Q ss_pred -cc----CCe-----eeeeceeeEee-C-CEEEEEecCCCeEEEEeCCCCeEEEEEECC-----chhhhhhhc-c---CC
Q 019103 229 -RY----KGR-----EVRNLNELEFI-K-GEVWANVWQTDCIARISHEDGVVLGWVLLP-----NLRERLVAA-G---YN 287 (346)
Q Consensus 229 -~~----~G~-----pv~~lNELE~~-~-G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~-----~l~~~~~~~-~---~~ 287 (346)
+. +|. .+..++.+.+. + ++||++....+.|.++|+++|.+....--. .+.. .+.. + ..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~-fG~~dG~g~~~ 801 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFK-FGDHDGVGSEV 801 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccc-ccCCCCchhhh
Confidence 00 110 12344556555 3 469999999999999999998753221100 0000 0000 0 01
Q ss_pred CCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 288 GIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 288 ~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
...-|.|||++++|+ +||+.-.-.+|..+..
T Consensus 802 ~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~ 832 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDP 832 (1057)
T ss_pred hccCCceeeEeCCCc-EEEEECCCCEEEEEEC
Confidence 234689999999886 9999988888888876
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-09 Score=102.80 Aligned_cols=215 Identities=20% Similarity=0.307 Sum_probs=127.0
Q ss_pred eeeeEEE-EEEecCCCCcceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE-E
Q 019103 90 IYTIQVV-NEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV-T 166 (346)
Q Consensus 90 ~~t~~Vv-~t~phd~~~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l-t 166 (346)
.|.+.|- +.+|--.+- .-||+++++ ++||.-+. +...|..+|+ +|++++++++.+--=.|||+..++..|++ .
T Consensus 7 ~y~~~i~~~~l~g~~~e-~SGLTy~pd~~tLfaV~d--~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~ 82 (248)
T PF06977_consen 7 DYRVVIEAKPLPGILDE-LSGLTYNPDTGTLFAVQD--EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSE 82 (248)
T ss_dssp T-EEEEEEEE-TT--S--EEEEEEETTTTEEEEEET--TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEE
T ss_pred CcEEEEeeeECCCccCC-ccccEEcCCCCeEEEEEC--CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEE
Confidence 3455554 344422222 479999986 58998887 5679999997 59999999987533369999988655555 6
Q ss_pred eeCCEEEEEECCC----C--cEEEEEecCC-------CceeEEeeCCCEEEEECC--CCeEEEEeC--CCCc--EEEEEE
Q 019103 167 WLQKTGFIYDQNN----L--NKLEEFTHQM-------KDGWGLATDGKVLFGSDG--SSMLYQIDP--QTLK--VIRKDI 227 (346)
Q Consensus 167 w~~~~v~V~D~~t----l--~~i~ti~~~~-------peGwGLt~Dg~~LyvSdG--s~~l~vIDp--~T~k--vi~~I~ 227 (346)
.+.+.+++++..+ . ....+++.+. -||.+.++.+++||+.-. ...|+-++. .... +.....
T Consensus 83 Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc
Confidence 6789999888722 1 1223444321 387778888899999763 346888875 2222 222222
Q ss_pred eccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019103 228 VRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 228 V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
+...+..+..+..+.+. .|.+|+=.-.+..|+++| .+|+++..+++..-...+. .....|.|||+|++| +||
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~----~~~~QpEGIa~d~~G-~LY 236 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLS----KDIPQPEGIAFDPDG-NLY 236 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-S----S---SEEEEEE-TT---EE
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcc----cccCCccEEEECCCC-CEE
Confidence 22222334445567766 579999888899999999 8999999998854332222 123478999999875 899
Q ss_pred EecCCCCcEEE
Q 019103 306 VTGKLWPKLYE 316 (346)
Q Consensus 306 VTGK~Wp~l~e 316 (346)
|.+. |++|-
T Consensus 237 IvsE--pNlfy 245 (248)
T PF06977_consen 237 IVSE--PNLFY 245 (248)
T ss_dssp EEET--TTEEE
T ss_pred EEcC--CceEE
Confidence 9986 76653
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-09 Score=92.84 Aligned_cols=203 Identities=16% Similarity=0.222 Sum_probs=140.7
Q ss_pred EEEEEEecCCCCcceeE--EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019103 94 QVVNEFPHDPRAFTQGL--LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL--~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
+++-+++.. ..+..++ .+..++++|+++ ++..|..+|+.||+++-+..++...... ....++++|+.+ .++.
T Consensus 14 ~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~v~~-~~~~ 87 (238)
T PF13360_consen 14 KELWSYDLG-PGIGGPVATAVPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVYVGT-SDGS 87 (238)
T ss_dssp EEEEEEECS-SSCSSEEETEEEETTEEEEEE---TTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEEEEE-TTSE
T ss_pred CEEEEEECC-CCCCCccceEEEeCCEEEEEc---CCCEEEEEECCCCCEEEEeeccccccce-eeeccccccccc-ceee
Confidence 445555552 2344566 554578999985 4579999999999999999986544333 477899999999 4569
Q ss_pred EEEEECCCCcEEEEE-ecC---CC--ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC--Ceeeee----ce
Q 019103 172 GFIYDQNNLNKLEEF-THQ---MK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--GREVRN----LN 239 (346)
Q Consensus 172 v~V~D~~tl~~i~ti-~~~---~p--eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~--G~pv~~----lN 239 (346)
++.+|..|++++.++ ... .+ .....+.+++.+|+...+..|+.+|++|++++-+.++... ..++.. ..
T Consensus 88 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 167 (238)
T PF13360_consen 88 LYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDING 167 (238)
T ss_dssp EEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEE
T ss_pred eEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeeccccc
Confidence 999999999999996 321 11 1223455699999998899999999999999999988542 112111 11
Q ss_pred eeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 240 ELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 240 ELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.+-+.+|++|+...... +..+|.++|+++ | .. .+. .+.++ ...+++.+|++. ..++|+-+++
T Consensus 168 ~~~~~~~~v~~~~~~g~-~~~~d~~tg~~~-w-~~-~~~------------~~~~~-~~~~~~~l~~~~-~~~~l~~~d~ 229 (238)
T PF13360_consen 168 SPVISDGRVYVSSGDGR-VVAVDLATGEKL-W-SK-PIS------------GIYSL-PSVDGGTLYVTS-SDGRLYALDL 229 (238)
T ss_dssp EEECCTTEEEEECCTSS-EEEEETTTTEEE-E-EE-CSS-------------ECEC-EECCCTEEEEEE-TTTEEEEEET
T ss_pred ceEEECCEEEEEcCCCe-EEEEECCCCCEE-E-Ee-cCC------------CccCC-ceeeCCEEEEEe-CCCEEEEEEC
Confidence 23344789999876554 455599999977 5 22 111 12221 346789999999 7899998875
Q ss_pred e
Q 019103 320 R 320 (346)
Q Consensus 320 ~ 320 (346)
.
T Consensus 230 ~ 230 (238)
T PF13360_consen 230 K 230 (238)
T ss_dssp T
T ss_pred C
Confidence 3
|
... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-07 Score=85.46 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=107.6
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEE--EE-eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEE
Q 019103 127 RSSVRRVALETGKVEAINQMEGSYFGEGL--TL-LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVL 203 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGi--t~-~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~L 203 (346)
++.|..+|+++|+++-+..+.+. ++.++ +. .++++|+.+ .++.++.+|++|++++.+++.+.+-......+++.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-IGGPVATAVPDGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-CSSEEETEEEETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCC-CCCccceEEEeCCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence 35899999999999999988431 33444 44 889999995 789999999999999999997522222246678888
Q ss_pred EEECCCCeEEEEeCCCCcEEEEEEecc-CCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019103 204 FGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 204 yvSdGs~~l~vIDp~T~kvi~~I~V~~-~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
|+...++.|+.+|++|++++-++.-.. ...++...-...+.++.+|+... ...|..+|++||+++-...+
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEES
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeec
Confidence 887677799999999999988753322 11111111123344778888775 88999999999999999977
|
... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.04 E-value=8e-09 Score=101.85 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=94.2
Q ss_pred CCEEEEEEe----eCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEEC--------C--CCeEEEEeCCCCcEEE
Q 019103 159 GEKLFQVTW----LQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD--------G--SSMLYQIDPQTLKVIR 224 (346)
Q Consensus 159 g~~LY~ltw----~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSd--------G--s~~l~vIDp~T~kvi~ 224 (346)
.+|+|+.+- ...+++|||.++++.++.++.+.-.+..+++||+.+|+++ | ++-|.++|++|++.++
T Consensus 2 ~~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~ 81 (342)
T PF06433_consen 2 AHRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG 81 (342)
T ss_dssp TTEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred CcEEEEECCccccccceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc
Confidence 478998875 2468999999999999999987556688999999999865 1 7789999999999999
Q ss_pred EEEeccCCe--eeeeceeeEe--eCCEEEE-EecCCCeEEEEeCCCCeEEEEEECCchhhh
Q 019103 225 KDIVRYKGR--EVRNLNELEF--IKGEVWA-NVWQTDCIARISHEDGVVLGWVLLPNLRER 280 (346)
Q Consensus 225 ~I~V~~~G~--pv~~lNELE~--~~G~Lya-Nv~~sn~I~vID~~TG~Vv~~I~l~~l~~~ 280 (346)
.|.+....+ .....|-+.. .+.++|| |.-....|.|||.+.++|+.+|++++|...
T Consensus 82 EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i 142 (342)
T PF06433_consen 82 EIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI 142 (342)
T ss_dssp EEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE
T ss_pred eEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE
Confidence 999964211 1123333333 3457887 666688999999999999999999999643
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-08 Score=96.46 Aligned_cols=201 Identities=19% Similarity=0.304 Sum_probs=136.0
Q ss_pred EEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe-cc----CCCeeEEEEEEeCCEEEEEEee--
Q 019103 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QM----EGSYFGEGLTLLGEKLFQVTWL-- 168 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l----~~~~FgeGit~~g~~LY~ltw~-- 168 (346)
.+.+++ +..++.|..++.++.|+.+-- .+..+|++++..+..+ .. +...+-.|..--.+.+|+.|-.
T Consensus 59 ~~~~~~-p~~~~~~~~~d~~g~Lv~~~~-----g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~ 132 (307)
T COG3386 59 KRVFPS-PGGFSSGALIDAGGRLIACEH-----GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYF 132 (307)
T ss_pred eEEEEC-CCCcccceeecCCCeEEEEcc-----ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCcc
Confidence 344555 667778999987778887743 5777888877663333 21 2244555555555788887633
Q ss_pred ---------CCEEEEEECCCCcEEEEEec--CCCceeEEeeCCCEEEEECC-CCeEEEEeCC--CCcEEEEE-Eecc---
Q 019103 169 ---------QKTGFIYDQNNLNKLEEFTH--QMKDGWGLATDGKVLFGSDG-SSMLYQIDPQ--TLKVIRKD-IVRY--- 230 (346)
Q Consensus 169 ---------~~~v~V~D~~tl~~i~ti~~--~~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~--T~kvi~~I-~V~~--- 230 (346)
.+.++.||+ ..+.++-+.- ..+.|.+++||++.||++|. .+.|+.+|.. +..+-.+. .+..
T Consensus 133 ~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~ 211 (307)
T COG3386 133 DLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEE 211 (307)
T ss_pred ccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCC
Confidence 356899998 3444444432 25799999999999999995 7899999754 34433321 1111
Q ss_pred CCeeeeeceeeEee-CCEEE-EEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 231 KGREVRNLNELEFI-KGEVW-ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 231 ~G~pv~~lNELE~~-~G~Ly-aNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
.|.|=+ +..+ +|.|| +..|....|.+++|+ |+.++.|.++.- .+.|-..--++.++||||.
T Consensus 212 ~G~PDG----~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~------------~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 212 PGLPDG----MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK------------RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCCc----eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC------------CCccceEeCCCcCEEEEEe
Confidence 244432 3333 78999 788888899999999 999999988431 1234344556789999999
Q ss_pred CCCCc------------EEEEEEe
Q 019103 309 KLWPK------------LYEINLR 320 (346)
Q Consensus 309 K~Wp~------------l~ev~l~ 320 (346)
-.+.- ||.+++.
T Consensus 275 ~~~~~~~~~~~~~~~G~lf~~~~~ 298 (307)
T COG3386 275 ARSGMSRMLTADPLGGGLFSLRLE 298 (307)
T ss_pred cCCCCCccccccccCceEEEEecc
Confidence 88844 9998864
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-07 Score=80.12 Aligned_cols=183 Identities=13% Similarity=0.146 Sum_probs=130.1
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
...+.+.+++.++.+++ .+..|.+||+.+++....+..... ....+.... +.++++.-.++.+.++|..+.+.+..
T Consensus 96 i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 172 (289)
T cd00200 96 VSSVAFSPDGRILSSSS--RDKTIKVWDVETGKCLTTLRGHTD-WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172 (289)
T ss_pred EEEEEEcCCCCEEEEec--CCCeEEEEECCCcEEEEEeccCCC-cEEEEEEcCcCCEEEEEcCCCcEEEEEcccccccee
Confidence 36888988877777766 456999999999988777763221 123355544 33444444589999999999988888
Q ss_pred EecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEEEEecCCCeEEEEe
Q 019103 186 FTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANVWQTDCIARIS 262 (346)
Q Consensus 186 i~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~LyaNv~~sn~I~vID 262 (346)
+... ......++++++.++++..++.|.++|..+.+.+..+.... .+ ++.+.+.. +.+++..-..+.|.+.|
T Consensus 173 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~---i~~~~~~~~~~~~~~~~~~~~i~i~~ 247 (289)
T cd00200 173 LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NG---VNSVAFSPDGYLLASGSEDGTIRVWD 247 (289)
T ss_pred EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--Cc---eEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 8753 23445577888899988778899999999988877764322 12 23355554 66776665688999999
Q ss_pred CCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 263 HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 263 ~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
..+++.+..+... .....+++++++++.|++++..
T Consensus 248 ~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 248 LRTGECVQTLSGH-------------TNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred cCCceeEEEcccc-------------CCcEEEEEECCCCCEEEEecCC
Confidence 9999988877421 1246889999998887777543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-08 Score=92.58 Aligned_cols=164 Identities=17% Similarity=0.140 Sum_probs=116.2
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
+-+++++.+.++.-|.+|+++.+ ++||.=|= .+....+||.+|-+.+.+..++.+- =|++.++++||+++. +++
T Consensus 77 tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTW--k~~~~f~yd~~tl~~~~~~~y~~EG--WGLt~dg~~Li~SDG-S~~ 150 (264)
T PF05096_consen 77 TGKVLQSVPLPPRYFGEGITILG-DKLYQLTW--KEGTGFVYDPNTLKKIGTFPYPGEG--WGLTSDGKRLIMSDG-SSR 150 (264)
T ss_dssp TSSEEEEEE-TTT--EEEEEEET-TEEEEEES--SSSEEEEEETTTTEEEEEEE-SSS----EEEECSSCEEEE-S-SSE
T ss_pred CCcEEEEEECCccccceeEEEEC-CEEEEEEe--cCCeEEEEccccceEEEEEecCCcc--eEEEcCCCEEEEECC-ccc
Confidence 45788999999999999999994 78887765 5569999999999999999998764 558999999999998 799
Q ss_pred EEEEECCCCcEEEEEecC-CCceeE----EeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEecc-------CCe---ee
Q 019103 172 GFIYDQNNLNKLEEFTHQ-MKDGWG----LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY-------KGR---EV 235 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-~peGwG----Lt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~-------~G~---pv 235 (346)
++.+|++|++.++++.+. ...... |=.-++.+|+-= .++.|..|||+|++|++.+.... .+. ..
T Consensus 151 L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~ 230 (264)
T PF05096_consen 151 LYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDD 230 (264)
T ss_dssp EEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TT
T ss_pred eEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccC
Confidence 999999999999999974 112222 222356777743 69999999999999999998754 011 13
Q ss_pred eeceeeEee--CCEEEEEecCCCeEEEE
Q 019103 236 RNLNELEFI--KGEVWANVWQTDCIARI 261 (346)
Q Consensus 236 ~~lNELE~~--~G~LyaNv~~sn~I~vI 261 (346)
..||-+.|+ .+++|++=-.=+.+..|
T Consensus 231 dVLNGIAyd~~~~~l~vTGK~Wp~lyeV 258 (264)
T PF05096_consen 231 DVLNGIAYDPETDRLFVTGKLWPKLYEV 258 (264)
T ss_dssp S-EEEEEEETTTTEEEEEETT-SEEEEE
T ss_pred CeeEeEeEeCCCCEEEEEeCCCCceEEE
Confidence 468988886 56899986444555555
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-07 Score=79.37 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=129.1
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
...+.+++++.++.+.+ .+..|.+||..+++............ ..+... ++.++.+. .++.+.++|..+.+.+.
T Consensus 12 i~~~~~~~~~~~l~~~~--~~g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~ 87 (289)
T cd00200 12 VTCVAFSPDGKLLATGS--GDGTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGS-SDKTIRLWDLETGECVR 87 (289)
T ss_pred EEEEEEcCCCCEEEEee--cCcEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEc-CCCeEEEEEcCcccceE
Confidence 46899998876666655 35699999999998766665443332 234443 34555554 48999999999988888
Q ss_pred EEecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEEEEecCCCeEEEE
Q 019103 185 EFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANVWQTDCIARI 261 (346)
Q Consensus 185 ti~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~LyaNv~~sn~I~vI 261 (346)
++.... .....++++++.++++..++.|.++|..+.+....+.... .+ +..+.+.. +.+++.....+.|.+.
T Consensus 88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~---i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT--DW---VNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC--Cc---EEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 876431 2334455666666666568899999999888877776322 12 23455554 4555544457889999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
|..+++.+..+... ....+.++++|+++.+++++. .+.++-..+
T Consensus 163 d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~ 206 (289)
T cd00200 163 DLRTGKCVATLTGH-------------TGEVNSVAFSPDGEKLLSSSS-DGTIKLWDL 206 (289)
T ss_pred EccccccceeEecC-------------ccccceEEECCCcCEEEEecC-CCcEEEEEC
Confidence 99999988877531 124578999999988888886 555555444
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-08 Score=96.84 Aligned_cols=160 Identities=16% Similarity=0.229 Sum_probs=108.8
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec--c--CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC----
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ--M--EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN---- 179 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~--l--~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t---- 179 (346)
.-..++|+++..++.-| |.++|..||++.|++....+ + +..|--.-+.+.++..|+.++.+++|.|++.+.
T Consensus 148 H~a~~tP~~~~l~v~DL-G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 148 HSANFTPDGRYLVVPDL-GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK 226 (346)
T ss_pred ceeeeCCCCCEEEEeec-CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence 44567788876666565 89999999999998755542 2 233434445556788999999999999987665
Q ss_pred CcEEEEEec---C-CCceeE----EeeCCCEEEEEC-CCCe--EEEEeCCCCcEEEEEEeccCCe-eeeeceeeEeeCCE
Q 019103 180 LNKLEEFTH---Q-MKDGWG----LATDGKVLFGSD-GSSM--LYQIDPQTLKVIRKDIVRYKGR-EVRNLNELEFIKGE 247 (346)
Q Consensus 180 l~~i~ti~~---~-~peGwG----Lt~Dg~~LyvSd-Gs~~--l~vIDp~T~kvi~~I~V~~~G~-pv~~lNELE~~~G~ 247 (346)
++.+.++.. . .+.-|+ +++||+.||+|| |.+. ++-||+.++++.---.....|+ |..+- +...+..
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~--i~~~g~~ 304 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN--INPSGRF 304 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce--eCCCCCE
Confidence 344444432 1 122233 899999999999 5664 5567888876532222223455 65531 4445668
Q ss_pred EEEEecCCCe--EEEEeCCCCeEEE
Q 019103 248 VWANVWQTDC--IARISHEDGVVLG 270 (346)
Q Consensus 248 LyaNv~~sn~--I~vID~~TG~Vv~ 270 (346)
|+|++..+|. |..||++||++..
T Consensus 305 Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 305 LIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEEEccCCCcEEEEEEcCCCceEEe
Confidence 9999998886 6679999999743
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-07 Score=89.27 Aligned_cols=174 Identities=12% Similarity=0.033 Sum_probs=119.8
Q ss_pred eeEEEEEEecCCCC----cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe
Q 019103 92 TIQVVNEFPHDPRA----FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~phd~~~----FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw 167 (346)
+.+++=+++.+... ...+..+. ++++|+++. +..|..+|.+||+++=+..++... .-+.++.++++|+.+.
T Consensus 39 ~~~~~W~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~---~g~v~a~d~~tG~~~W~~~~~~~~-~~~p~v~~~~v~v~~~ 113 (377)
T TIGR03300 39 KVDQVWSASVGDGVGHYYLRLQPAVA-GGKVYAADA---DGTVVALDAETGKRLWRVDLDERL-SGGVGADGGLVFVGTE 113 (377)
T ss_pred cceeeeEEEcCCCcCccccccceEEE-CCEEEEECC---CCeEEEEEccCCcEeeeecCCCCc-ccceEEcCCEEEEEcC
Confidence 35556566653321 12355665 579999875 248999999999999888887653 3457778999998875
Q ss_pred eCCEEEEEECCCCcEEEEEecCCCceeE-EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC
Q 019103 168 LQKTGFIYDQNNLNKLEEFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG 246 (346)
Q Consensus 168 ~~~~v~V~D~~tl~~i~ti~~~~peGwG-Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G 246 (346)
++.++.+|++|++++-+.+.+. +-.. ...+++.+|+..+++.|+.+|++|++++-+................-..++
T Consensus 114 -~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~ 191 (377)
T TIGR03300 114 -KGEVIALDAEDGKELWRAKLSS-EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADG 191 (377)
T ss_pred -CCEEEEEECCCCcEeeeeccCc-eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECC
Confidence 5899999999999999887641 1111 122567899988888999999999998776655321100000001223467
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEE
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~ 273 (346)
.+|+.. ....+..||+++|+++-...
T Consensus 192 ~v~~~~-~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 192 GVLVGF-AGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred EEEEEC-CCCEEEEEEccCCCEeeeec
Confidence 888765 36789999999999875543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.9e-07 Score=87.95 Aligned_cols=212 Identities=11% Similarity=0.079 Sum_probs=139.6
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCC-CcEEEEe---cc-CC---------CeeEEEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALET-GKVEAIN---QM-EG---------SYFGEGLTL 157 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~T-gkv~~~~---~l-~~---------~~FgeGit~ 157 (346)
+++.++..+.+..+ +--+.++++|++..++. |..+.|+++-+++ |.+...+ .- ++ ..--..+++
T Consensus 77 ~Lt~ln~~~~~g~~-p~yvsvd~~g~~vf~An-Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 77 RLTFLNRQTLPGSP-PCYVSVDEDGRFVFVAN-YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred eEEEeeccccCCCC-CeEEEECCCCCEEEEEE-ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC
Confidence 45666666654444 25788888886444433 7888999998855 6543332 21 11 133467899
Q ss_pred eCCEEEEEEeeCCEEEEEECCCCcEEEEEecC-----CCceeEEeeCCCEEEEECC-CCeEEEEeCCC--C--cEEEEEE
Q 019103 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDG-SSMLYQIDPQT--L--KVIRKDI 227 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-----~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T--~--kvi~~I~ 227 (346)
+++.|++.+-...++++||.+++++...-+.. .|-...+.|+++.+|+-+. +++|.+++-.+ + +.+.+|.
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~ 234 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID 234 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec
Confidence 99999999999999999999988776655442 3566669999999999775 88877765443 3 3333333
Q ss_pred ecc---CCeeeeeceeeEee-CC-EEEEEecCCCeE--EEEeCCCCeE--EEEEECCchhhhhhhccCCCCceeeEEEEe
Q 019103 228 VRY---KGREVRNLNELEFI-KG-EVWANVWQTDCI--ARISHEDGVV--LGWVLLPNLRERLVAAGYNGIDVLNGIAWD 298 (346)
Q Consensus 228 V~~---~G~pv~~lNELE~~-~G-~LyaNv~~sn~I--~vID~~TG~V--v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d 298 (346)
+-. .|.. ..-++-.. || +|||.+-.-|.| ..||+.+|+. +++.++. +..|-+-.++
T Consensus 235 tlP~dF~g~~--~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-------------g~~PR~F~i~ 299 (346)
T COG2706 235 TLPEDFTGTN--WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-------------GQFPRDFNIN 299 (346)
T ss_pred cCccccCCCC--ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-------------CcCCccceeC
Confidence 311 1211 01122222 45 799999877765 5689999973 3444331 2245666799
Q ss_pred CCCCEEEEecCCCCcEEEEEEe
Q 019103 299 SNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 299 ~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+.++.|+++|++.+++-.-+..
T Consensus 300 ~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 300 PSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCEEEEEccCCCcEEEEEEc
Confidence 9999999999999987555443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.2e-07 Score=87.78 Aligned_cols=157 Identities=10% Similarity=0.072 Sum_probs=109.8
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC----------eeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS----------YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 111 ~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~----------~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
.+. ++++|+.+. ...|..+|.+||+++=+..++.. ....+.++.++++|+.+ .++.++.+|++|+
T Consensus 66 vv~-~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-~~g~l~ald~~tG 140 (394)
T PRK11138 66 AVA-YNKVYAADR---AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS-EKGQVYALNAEDG 140 (394)
T ss_pred EEE-CCEEEEECC---CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc-CCCEEEEEECCCC
Confidence 344 689999865 34899999999999877776541 22345788899999876 4678999999999
Q ss_pred cEEEEEecCCCceeE-EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEE
Q 019103 181 NKLEEFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIA 259 (346)
Q Consensus 181 ~~i~ti~~~~peGwG-Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~ 259 (346)
+++-+.+.+. +.+. -.-.++.+|+..+++.|+-+|++|++++=+...............-...+|.+|+... .+.+.
T Consensus 141 ~~~W~~~~~~-~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~-~g~v~ 218 (394)
T PRK11138 141 EVAWQTKVAG-EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD-NGRVS 218 (394)
T ss_pred CCcccccCCC-ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC-CCEEE
Confidence 9999988641 2221 1224678899888889999999999998666653210000000011134678887653 67899
Q ss_pred EEeCCCCeEEEEEEC
Q 019103 260 RISHEDGVVLGWVLL 274 (346)
Q Consensus 260 vID~~TG~Vv~~I~l 274 (346)
.+|+++|+++-...+
T Consensus 219 a~d~~~G~~~W~~~~ 233 (394)
T PRK11138 219 AVLMEQGQLIWQQRI 233 (394)
T ss_pred EEEccCChhhheecc
Confidence 999999998655443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.7e-07 Score=88.35 Aligned_cols=179 Identities=12% Similarity=0.131 Sum_probs=121.2
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCee----------EEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF----------GEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~F----------geGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
++.+|++++ +..+..+|+++|+++-+.++..... ...-.+.++.+|+.+. ++.++.+|+++++++-
T Consensus 205 ~~~v~~~~~---~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g~l~ald~~tG~~~W 280 (394)
T PRK11138 205 FGGAIVGGD---NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NGNLVALDLRSGQIVW 280 (394)
T ss_pred CCEEEEEcC---CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CCeEEEEECCCCCEEE
Confidence 356777654 4589999999999766654422110 0111346899999885 5899999999999998
Q ss_pred EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCC
Q 019103 185 EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 185 ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~ 264 (346)
+.+.+.+. .+..+++++|+.+.++.|+.+|++|++++=+.....+ .. ....-..+|+||+.. .+..|..||++
T Consensus 281 ~~~~~~~~--~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~---~~sp~v~~g~l~v~~-~~G~l~~ld~~ 353 (394)
T PRK11138 281 KREYGSVN--DFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH-RL---LTAPVLYNGYLVVGD-SEGYLHWINRE 353 (394)
T ss_pred eecCCCcc--CcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCC-Cc---ccCCEEECCEEEEEe-CCCEEEEEECC
Confidence 87765222 3456789999999889999999999987543322111 11 112234689999876 36789999999
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
||+++.+.++..- .+....++. +++|||..+ .++||.+++
T Consensus 354 tG~~~~~~~~~~~------------~~~s~P~~~--~~~l~v~t~-~G~l~~~~~ 393 (394)
T PRK11138 354 DGRFVAQQKVDSS------------GFLSEPVVA--DDKLLIQAR-DGTVYAITR 393 (394)
T ss_pred CCCEEEEEEcCCC------------cceeCCEEE--CCEEEEEeC-CceEEEEeC
Confidence 9999999977210 011122232 468998854 568888764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.6e-06 Score=83.52 Aligned_cols=148 Identities=15% Similarity=0.176 Sum_probs=105.7
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe----------eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY----------FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~----------FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
++.+|.++. +..|..+|+++|+++-+..+.... +.....+.++++|+.++ ++.++.+|+++++++-
T Consensus 190 ~~~v~~~~~---~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 190 DGGVLVGFA---GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY-QGRVAALDLRSGRVLW 265 (377)
T ss_pred CCEEEEECC---CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-CCEEEEEECCCCcEEE
Confidence 356676643 348999999999987655432110 11112346889999886 5789999999999998
Q ss_pred EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEE-EeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeC
Q 019103 185 EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD-IVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISH 263 (346)
Q Consensus 185 ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I-~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~ 263 (346)
+.+.+ ....+..+++++|+.+.+..|+.+|+.|++++-+. .... .... ..-..+++||+.. .+..|..+|+
T Consensus 266 ~~~~~--~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--~~~s---sp~i~g~~l~~~~-~~G~l~~~d~ 337 (377)
T TIGR03300 266 KRDAS--SYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKY--RQLT---APAVVGGYLVVGD-FEGYLHWLSR 337 (377)
T ss_pred eeccC--CccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccC--Cccc---cCEEECCEEEEEe-CCCEEEEEEC
Confidence 88753 22234567899999988899999999999887554 2221 1111 1224678999876 4778999999
Q ss_pred CCCeEEEEEEC
Q 019103 264 EDGVVLGWVLL 274 (346)
Q Consensus 264 ~TG~Vv~~I~l 274 (346)
+||+++.++++
T Consensus 338 ~tG~~~~~~~~ 348 (377)
T TIGR03300 338 EDGSFVARLKT 348 (377)
T ss_pred CCCCEEEEEEc
Confidence 99999999976
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.5e-07 Score=88.12 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=108.9
Q ss_pred CCeeEEEEEEeC--CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeE-EeeCCCEEEEECCCCeEEEEeCCCCcEEE
Q 019103 148 GSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (346)
Q Consensus 148 ~~~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwG-Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~ 224 (346)
...+|||-..+. +.||-++...++++.+|+.+.+. ..+..+....-+ +-.++..|++++. -++.+|+++...+.
T Consensus 23 ~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t 99 (307)
T COG3386 23 GATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKIT 99 (307)
T ss_pred ccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeE
Confidence 356788877754 66999999999999999986643 444443112223 3345678888873 34455556655544
Q ss_pred EEEeccCCeeeeeceeeEee-CCEEEEEecC-----------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCcee
Q 019103 225 KDIVRYKGREVRNLNELEFI-KGEVWANVWQ-----------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVL 292 (346)
Q Consensus 225 ~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~-----------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vl 292 (346)
.+.-.+.|.+...+|+.-.. +|.+|++.-. ...|+++||. |.++.-+. + ....+
T Consensus 100 ~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~--~-----------~~~~~ 165 (307)
T COG3386 100 LLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLD--D-----------DLTIP 165 (307)
T ss_pred EeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeec--C-----------cEEec
Confidence 44444556777889998766 7999987644 2369999995 54444331 1 13478
Q ss_pred eEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019103 293 NGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 293 NGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
|||||+||+++||++--.-..++++.+.+
T Consensus 166 NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred CceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 99999999999999987778899888864
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.6e-05 Score=79.90 Aligned_cols=197 Identities=10% Similarity=0.008 Sum_probs=124.7
Q ss_pred cceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEE-------EEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEE
Q 019103 106 FTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVE-------AINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 106 FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~-------~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D 176 (346)
-...+.|+| |+.++.+++ .+..|++||..++... ..+.- ........+.+.++.+.++.-.++.+.++|
T Consensus 77 ~V~~v~fsP~d~~~LaSgS--~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTAS--EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CEEEEEEcCCCCCEEEEEe--CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 347999998 777777777 5679999999876431 11111 112222222223344555556689999999
Q ss_pred CCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEe
Q 019103 177 QNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANV 252 (346)
Q Consensus 177 ~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv 252 (346)
.++.+.+.++... .-....+++||+.|+.+..+.+|.++|+.+.+.+.++........ +...+. ++.+.+.-
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~----~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKS----QRCLWAKRKDLIITLG 230 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcc----eEEEEcCCCCeEEEEe
Confidence 9999988888632 124455678999988888889999999999998877655332211 112222 24454433
Q ss_pred c---CCCeEEEEeCCCCe-EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 253 W---QTDCIARISHEDGV-VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 253 ~---~sn~I~vID~~TG~-Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+ .++.|.+-|..+.. .+..+++. ......-..|+++++.||++|+....|.-.++.
T Consensus 231 ~s~s~Dr~VklWDlr~~~~p~~~~~~d------------~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 231 CSKSQQRQIMLWDTRKMASPYSTVDLD------------QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred cCCCCCCeEEEEeCCCCCCceeEeccC------------CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 2 24678888887654 33333221 011233467999999999999988877555554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-05 Score=80.87 Aligned_cols=190 Identities=19% Similarity=0.235 Sum_probs=115.4
Q ss_pred eeEEEecCCE-E-EEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEE
Q 019103 108 QGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~~-L-yeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i 183 (346)
....++|||+ | |.+. ..|...|.++|+++|+.......+.....-..+++|++|+.+... +..++++|.++.+.
T Consensus 205 ~~p~wSpDG~~lay~s~-~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~- 282 (435)
T PRK05137 205 LTPRFSPNRQEITYMSY-ANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT- 282 (435)
T ss_pred EeeEECCCCCEEEEEEe-cCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-
Confidence 4678889984 4 5543 346789999999999865444444443444466778887655333 35699999988765
Q ss_pred EEEecC--CCceeEEeeCCCEE-EEEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe--eCCEEEE-EecC-
Q 019103 184 EEFTHQ--MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF--IKGEVWA-NVWQ- 254 (346)
Q Consensus 184 ~ti~~~--~peGwGLt~Dg~~L-yvSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~--~~G~Lya-Nv~~- 254 (346)
.++... ....-..+|||++| |+|| |..+|+++|.++.++. ++.-+. +. .+...+ .+.+|+. ....
T Consensus 283 ~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~-~~----~~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 283 TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGG-GR----YSTPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCC-Cc----ccCeEECCCCCEEEEEEcCCC
Confidence 334322 11223578999976 5576 4679999998876653 443321 11 112223 3345543 3222
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC-----CcEEEEEEe
Q 019103 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW-----PKLYEINLR 320 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W-----p~l~ev~l~ 320 (346)
...|.++|++++.+. .+.- + ......+|+|+++.++.+...- ..||.+.+.
T Consensus 357 ~~~i~~~d~~~~~~~-~lt~-~-------------~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 357 QFSIGVMKPDGSGER-ILTS-G-------------FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred ceEEEEEECCCCceE-eccC-C-------------CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 247999999777642 2211 1 0124578999999987754322 578988874
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-05 Score=77.61 Aligned_cols=193 Identities=17% Similarity=0.199 Sum_probs=132.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC--CCeeEEEEEE-eCCEEEEE-Ee---eCCEEEEEECC-C
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTL-LGEKLFQV-TW---LQKTGFIYDQN-N 179 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~--~~~FgeGit~-~g~~LY~l-tw---~~~~v~V~D~~-t 179 (346)
.|++.+|+....+.-++.--....+||..+|++.+.+.-+ ..+||+|+-- +|+.||.. +- ..+.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 5788887553333323333469999999999999988654 3577998876 56788877 22 26789999999 9
Q ss_pred CcEEEEEecC--CCceeEEeeCCCEEEEECC---C---------------CeEEEEeCCCCcEEEEEEec--c-------
Q 019103 180 LNKLEEFTHQ--MKDGWGLATDGKVLFGSDG---S---------------SMLYQIDPQTLKVIRKDIVR--Y------- 230 (346)
Q Consensus 180 l~~i~ti~~~--~peGwGLt~Dg~~LyvSdG---s---------------~~l~vIDp~T~kvi~~I~V~--~------- 230 (346)
++.+++|+.. .|.=.-+.+||+.|.|+|| + ..|..+|+.+++++.+..+. .
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 9999999963 3555668999999999996 2 25888999999987776551 1
Q ss_pred -----C----------Ceee--------eecee----eE-----------ee-------CC-EEEEEecCCCeEEEEeCC
Q 019103 231 -----K----------GREV--------RNLNE----LE-----------FI-------KG-EVWANVWQTDCIARISHE 264 (346)
Q Consensus 231 -----~----------G~pv--------~~lNE----LE-----------~~-------~G-~LyaNv~~sn~I~vID~~ 264 (346)
+ |.+- ....+ ++ |+ +| .+.++.-..+++.+.|.+
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence 1 1100 00000 11 11 33 567888889999999999
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
||++++...+.+. .|+|-.+++ |.+|... +.++.+.
T Consensus 248 tg~~~~~~~l~D~---------------cGva~~~~~--f~~ssG~-G~~~~~~ 283 (305)
T PF07433_consen 248 TGRLLGSVPLPDA---------------CGVAPTDDG--FLVSSGQ-GQLIRLS 283 (305)
T ss_pred CCCEeeccccCce---------------eeeeecCCc--eEEeCCC-ccEEEcc
Confidence 9999999977443 788887766 4444332 4455444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-05 Score=80.54 Aligned_cols=191 Identities=14% Similarity=0.058 Sum_probs=112.8
Q ss_pred eEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcEEEE
Q 019103 109 GLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEE 185 (346)
Q Consensus 109 GL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~i~t 185 (346)
...++|||+ |+.++-..+...|.++|+++|+.......+...+.-..+++|++|+.+...++ .++++|.++.+.. +
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~ 300 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-R 300 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-E
Confidence 568889984 44333334677999999999986554445443334456778888876654444 5999999887653 3
Q ss_pred EecC--CCceeEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC--CCeE
Q 019103 186 FTHQ--MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ--TDCI 258 (346)
Q Consensus 186 i~~~--~peGwGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~--sn~I 258 (346)
+... ....-.+++||++++. ++ |..+|+.+|.++.+.. ++.... ..... . .+...+.+||..... ...|
T Consensus 301 lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g-~~~~~-~-~~SpDG~~l~~~~~~~g~~~I 376 (448)
T PRK04792 301 ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEG-EQNLG-G-SITPDGRSMIMVNRTNGKFNI 376 (448)
T ss_pred CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCC-CCCcC-e-eECCCCCEEEEEEecCCceEE
Confidence 3321 1223357899998755 65 4679999999988754 333211 11110 0 122233466543332 2368
Q ss_pred EEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019103 259 ARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 259 ~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
.++|+++|++.. +.- . . .... .+|+|+++.++.+...-. .||.+.+
T Consensus 377 ~~~dl~~g~~~~-lt~-~-~---------~d~~---ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 377 ARQDLETGAMQV-LTS-T-R---------LDES---PSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred EEEECCCCCeEE-ccC-C-C---------CCCC---ceECCCCCEEEEEEecCCceEEEEEEC
Confidence 999999998632 211 1 0 0111 369999998876554332 3555544
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.1e-05 Score=80.78 Aligned_cols=201 Identities=11% Similarity=0.045 Sum_probs=125.7
Q ss_pred CcceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcE-EEEe-----ccC---CCeeEEEEEEeCCEEEEEEeeCCEEEE
Q 019103 105 AFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKV-EAIN-----QME---GSYFGEGLTLLGEKLFQVTWLQKTGFI 174 (346)
Q Consensus 105 ~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv-~~~~-----~l~---~~~FgeGit~~g~~LY~ltw~~~~v~V 174 (346)
.....+.|+|+ +.++.|++ .+..|++||+.++.. ...+ .+. .........+.+..+.++.-.++.+.+
T Consensus 75 ~~V~~lafsP~~~~lLASgS--~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGS--EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 33478999986 57788877 566999999987532 1110 111 222222222234555566667899999
Q ss_pred EECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeece--eeEeeCCEEEEE
Q 019103 175 YDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN--ELEFIKGEVWAN 251 (346)
Q Consensus 175 ~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lN--ELE~~~G~LyaN 251 (346)
+|..+.+.+.++..+ .-....+++||..|.++..+.+|.++|+.+.+.+.++....+++....+. .+-..+++|.+.
T Consensus 153 WDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 153 WDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred EECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 999999888887653 22445567899988777667899999999999988776644332211110 010122345554
Q ss_pred ecCC---CeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 252 VWQT---DCIARISHED-GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 252 v~~s---n~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
-+.. ..|.+-|..+ ++.+..+.+.. . . ..+ -..||++.+.+|++||....++--++
T Consensus 233 G~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~--------~--~~L-~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 233 GFSKNNMREMKLWDLKNTTSALVTMSIDN-A--------S--APL-IPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EcCCCCccEEEEEECCCCCCceEEEEecC-C--------c--cce-EEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 4432 3699999885 66666664411 0 0 111 13588999999999999886654444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-05 Score=77.70 Aligned_cols=191 Identities=16% Similarity=0.140 Sum_probs=113.0
Q ss_pred eeEEEecCC-EE-EEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEE
Q 019103 108 QGLLYAEND-TL-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~-~L-yeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i 183 (346)
....++||| +| |.+.. .+...|.++|+++|+.......+.....-..+++|++|+.....+ ..++++|.++.+..
T Consensus 202 ~~p~wSpDG~~la~~s~~-~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFE-QKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcC-CCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 456788888 45 55532 356789999999998655444443322334566788887655443 37999999987653
Q ss_pred EEEec-C-CCceeEEeeCCCEEE-EEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCC--C
Q 019103 184 EEFTH-Q-MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQT--D 256 (346)
Q Consensus 184 ~ti~~-~-~peGwGLt~Dg~~Ly-vSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~s--n 256 (346)
.+.. . .......++||++++ .+| |...|+.+|..+.+.. ++... +..... -.+...+++|+...-.. .
T Consensus 281 -~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~--~~~~~~-~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 281 -RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV--GNYNAR-PRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred -EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CCCccc-eEECCCCCEEEEEEccCCce
Confidence 3332 1 122235788999765 566 4668999999888754 33322 110000 01223344665433222 3
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC--CcEEEEEE
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW--PKLYEINL 319 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W--p~l~ev~l 319 (346)
.|.++|+++|++.. +. .-. .+ ...+|+|+|+.++.+...- ..||.+.+
T Consensus 356 ~l~~~dl~tg~~~~-lt--~~~----------~~--~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 356 HVAAQDLQRGSVRI-LT--DTS----------LD--ESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EEEEEECCCCCEEE-cc--CCC----------CC--CCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 59999999997532 21 100 01 1247999999988775433 34676665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-05 Score=79.72 Aligned_cols=192 Identities=15% Similarity=0.106 Sum_probs=115.0
Q ss_pred eeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcEEE
Q 019103 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~i~ 184 (346)
.+..++|||+ |+..+-..+...|.++|+++|+.......+.....-.++++|++|+.+...++ .++++|.++.+...
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 4667888884 44333223567899999999986544444433333345667888876655443 69999998876543
Q ss_pred EEecC-CCceeEEeeCCCEEE-EEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe--eCCEEEEEecCC--C
Q 019103 185 EFTHQ-MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF--IKGEVWANVWQT--D 256 (346)
Q Consensus 185 ti~~~-~peGwGLt~Dg~~Ly-vSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~--~~G~LyaNv~~s--n 256 (346)
-.... ......+++||++|+ ++| |...|+.+|.++.+.. ++... |... ....+ .+.+|+...... .
T Consensus 287 lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~--g~~~---~~~~~SpDG~~Ia~~~~~~~~~ 360 (433)
T PRK04922 287 LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQ--GNYN---ARASVSPDGKKIAMVHGSGGQY 360 (433)
T ss_pred CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecC--CCCc---cCEEECCCCCEEEEEECCCCce
Confidence 22221 112346789999765 576 3568999999887643 34332 1111 12233 344665543222 3
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC--CCcEEEEEEe
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL--WPKLYEINLR 320 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~--Wp~l~ev~l~ 320 (346)
.|.++|+++|+.. .+ .. . . .-...+|+|+++.++.+... -..||.+.+.
T Consensus 361 ~I~v~d~~~g~~~-~L--t~---~------~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 361 RIAVMDLSTGSVR-TL--TP---G------S---LDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred eEEEEECCCCCeE-EC--CC---C------C---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 6999999999864 22 11 0 0 00235799999987766553 3467777663
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.4e-05 Score=77.29 Aligned_cols=193 Identities=12% Similarity=0.045 Sum_probs=115.4
Q ss_pred ceeEEEecCCE--EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcE
Q 019103 107 TQGLLYAENDT--LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNK 182 (346)
Q Consensus 107 TqGL~~~~d~~--LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~ 182 (346)
.....++|||+ +|.+. ..+...|.++|+++|+......++.....-..+++|++|+.+.+.++ .++++|.++.+.
T Consensus 201 ~~~p~wSPDG~~la~~s~-~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTF-ESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred eeeeEEcCCCCEEEEEEe-cCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 35788999984 44543 23567999999999986554455443333346678888887755443 699999988765
Q ss_pred EEEEecC-CCceeEEeeCCCEE-EEEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEE-EEec-CCC
Q 019103 183 LEEFTHQ-MKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW-ANVW-QTD 256 (346)
Q Consensus 183 i~ti~~~-~peGwGLt~Dg~~L-yvSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Ly-aNv~-~sn 256 (346)
..-.... .......+|||++| |++| |..+|+.+|+++.+.. ++.. .+..... -.+..++.+|+ ++.. ...
T Consensus 280 ~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~~~-~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 280 RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQD-ADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCccC-EEECCCCCEEEEEEccCCCc
Confidence 4322221 12344678999976 6787 3569999999887653 3432 2211110 01222233554 4332 234
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
.|.++|+++|++. .+. ... . . ...+|+|||+.|+.+...-+ .|+.+.+
T Consensus 356 ~I~~~dl~~g~~~-~Lt--~~~--------~-~---~~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 356 HIAKQDLATGGVQ-VLT--DTF--------L-D---ETPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred eEEEEECCCCCeE-EeC--CCC--------C-C---CCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 6999999999853 221 100 0 0 23569999998877665433 2444444
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.47 E-value=6e-05 Score=74.31 Aligned_cols=180 Identities=17% Similarity=0.140 Sum_probs=107.6
Q ss_pred eeEEEecCCE-E-EEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEE
Q 019103 108 QGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~~-L-yeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i 183 (346)
....++|||+ | |.+.. .+...|.++|+++|+.......+...+...+++++++|+..... ...++++|.++.+..
T Consensus 193 ~~p~~Spdg~~la~~~~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~ 271 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFE-SGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT 271 (417)
T ss_pred ecccCCCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE
Confidence 4567888884 4 44433 25578999999999876555555555555567788888766544 346999999876543
Q ss_pred EEEecCC-CceeEEeeCCCEEE-EEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecC--C
Q 019103 184 EEFTHQM-KDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ--T 255 (346)
Q Consensus 184 ~ti~~~~-peGwGLt~Dg~~Ly-vSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~--s 255 (346)
.-..... ...-.+++||++|+ +++ |...|+++|..+.+.. ++... +... ....+. || +|+.+... .
T Consensus 272 ~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~--~~~~---~~~~~spdg~~i~~~~~~~~~ 345 (417)
T TIGR02800 272 RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR--GGYN---ASPSWSPDGDLIAFVHREGGG 345 (417)
T ss_pred ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CCCc---cCeEECCCCCEEEEEEccCCc
Confidence 3222211 11235688999874 566 3568999999887753 33322 1111 112232 44 55544322 2
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
..|.++|++++.+.. +. . . ......+|+|+++.|+.+..
T Consensus 346 ~~i~~~d~~~~~~~~-l~--~-------~-----~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 346 FNIAVMDLDGGGERV-LT--D-------T-----GLDESPSFAPNGRMILYATT 384 (417)
T ss_pred eEEEEEeCCCCCeEE-cc--C-------C-----CCCCCceECCCCCEEEEEEe
Confidence 379999999976421 21 0 0 01123578999987776544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-05 Score=79.91 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=110.6
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-----eEEEEEEeCCEEEEEEe--------eCCEE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-----FGEGLTLLGEKLFQVTW--------LQKTG 172 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-----FgeGit~~g~~LY~ltw--------~~~~v 172 (346)
+..|+.+..++++|+++. +..|..+|.+||+++=+..++... ..-+.++.++.+|+.+. ..+.+
T Consensus 101 ~~~g~~~~~~~~V~v~~~---~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v 177 (488)
T cd00216 101 VNRGVAYWDPRKVFFGTF---DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGAL 177 (488)
T ss_pred ccCCcEEccCCeEEEecC---CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEE
Confidence 345766654479999875 359999999999999888776531 23344667888988763 46789
Q ss_pred EEEECCCCcEEEEEecCCCc-----e---------------e---EEeeCCCEEEEECCC------------------Ce
Q 019103 173 FIYDQNNLNKLEEFTHQMKD-----G---------------W---GLATDGKVLFGSDGS------------------SM 211 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~pe-----G---------------w---GLt~Dg~~LyvSdGs------------------~~ 211 (346)
+.+|++|++++-+++...++ . | .+++.++.+|+..++ +.
T Consensus 178 ~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~ 257 (488)
T cd00216 178 RAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS 257 (488)
T ss_pred EEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence 99999999999998763111 0 1 123347888886432 38
Q ss_pred EEEEeCCCCcEEEEEEeccC------CeeeeeceeeEeeCC----EEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019103 212 LYQIDPQTLKVIRKDIVRYK------GREVRNLNELEFIKG----EVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 212 l~vIDp~T~kvi~~I~V~~~------G~pv~~lNELE~~~G----~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
|+-+|++|++++=+.++... +..-..+-++..++| .+|+..+ +..+..+|++||+++=..++
T Consensus 258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~-~G~l~ald~~tG~~~W~~~~ 329 (488)
T cd00216 258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPK-NGFFYVLDRTTGKLISARPE 329 (488)
T ss_pred EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECC-CceEEEEECCCCcEeeEeEe
Confidence 99999999999866554321 110001111112344 3666653 67799999999998876654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.8e-05 Score=77.26 Aligned_cols=191 Identities=18% Similarity=0.148 Sum_probs=117.4
Q ss_pred eEEEecCCE--EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe--eCCEEEEEECCCCcEEE
Q 019103 109 GLLYAENDT--LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW--LQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 109 GL~~~~d~~--LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw--~~~~v~V~D~~tl~~i~ 184 (346)
...++|||+ +|.++...+...|.++|+++|+...-...+........+++|++|..+.. .+..++++|.++.+. .
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~ 270 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T 270 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E
Confidence 566788883 66544433567999999999987666565554555557788887765543 346899999877653 3
Q ss_pred EEecC--CCceeEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCE-EEEEecC----
Q 019103 185 EFTHQ--MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE-VWANVWQ---- 254 (346)
Q Consensus 185 ti~~~--~peGwGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~-LyaNv~~---- 254 (346)
.+... .-.....+|||++|+. || |...|+++|.++.+..+ +. ..|.. +. .+..++++ +|+....
T Consensus 271 ~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt--~~g~~--~~-~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 271 QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VV--FHGKN--NS-SVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-Cc--cCCCc--Cc-eECCCCCEEEEEEcCCCccc
Confidence 44321 1122358999987655 77 35599999999887643 22 22221 11 23333444 4444332
Q ss_pred ---CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEEee
Q 019103 255 ---TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINLRE 321 (346)
Q Consensus 255 ---sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l~~ 321 (346)
...|.++|+++|+.. .+ ..-. . -+..+|+|+|+.++.+....+ .|+.+.+..
T Consensus 345 ~~~~~~I~v~d~~~g~~~-~L--T~~~--------~----~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIR-RL--TANG--------V----NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCcEEEEEECCCCCeE-EC--CCCC--------C----cCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 148999999999752 22 1100 0 012679999998766544332 377777743
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-05 Score=77.64 Aligned_cols=190 Identities=16% Similarity=0.176 Sum_probs=125.3
Q ss_pred EEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC--CCeeEEEEEEeCCEEEEEEeeCCEEE
Q 019103 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLGEKLFQVTWLQKTGF 173 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~--~~~FgeGit~~g~~LY~ltw~~~~v~ 173 (346)
..+||.++..-+.-++.++||.+|.+.. +...|-..|++||++ .+++++ ..+||.-+..++ -.|+++... -|.
T Consensus 53 ~~~fpvp~G~ap~dvapapdG~VWft~q--g~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg-~~Witd~~~-aI~ 127 (353)
T COG4257 53 SAEFPVPNGSAPFDVAPAPDGAVWFTAQ--GTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDG-SAWITDTGL-AIG 127 (353)
T ss_pred cceeccCCCCCccccccCCCCceEEecC--ccccceecCCCCCce-EEEecCCCCCCceEEECCCC-CeeEecCcc-eeE
Confidence 3567877666666888889998877755 667999999999987 455664 566665444444 377776544 777
Q ss_pred EEECCCCcE-------------------------------------------EEEEecC---CCceeEEeeCCCEEEEEC
Q 019103 174 IYDQNNLNK-------------------------------------------LEEFTHQ---MKDGWGLATDGKVLFGSD 207 (346)
Q Consensus 174 V~D~~tl~~-------------------------------------------i~ti~~~---~peGwGLt~Dg~~LyvSd 207 (346)
.+|++|+++ ++.|+.+ .|+|.-.++||..-|.|-
T Consensus 128 R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasl 207 (353)
T COG4257 128 RLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASL 207 (353)
T ss_pred EecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEec
Confidence 788877754 3344442 467777888888777777
Q ss_pred CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhcc
Q 019103 208 GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAG 285 (346)
Q Consensus 208 Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~ 285 (346)
-.|.|.-|||.+..- ..++.-+. ..+-..=-+. -|++|++-|....+.+.||.+-. =..+.+++..+
T Consensus 208 agnaiaridp~~~~a-ev~p~P~~---~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~a------ 276 (353)
T COG4257 208 AGNAIARIDPFAGHA-EVVPQPNA---LKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKA------ 276 (353)
T ss_pred cccceEEcccccCCc-ceecCCCc---ccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCC------
Confidence 889999999988722 12222111 0000000122 37999999999999999999887 33444544331
Q ss_pred CCCCceeeEEEEeCCCCEEEEe
Q 019103 286 YNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 286 ~~~~~vlNGIA~d~~~~~LfVT 307 (346)
-++-+-.| +.+|+|..
T Consensus 277 -----rpys~rVD-~~grVW~s 292 (353)
T COG4257 277 -----RPYSMRVD-RHGRVWLS 292 (353)
T ss_pred -----Ccceeeec-cCCcEEee
Confidence 34556676 55677775
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.3e-05 Score=76.50 Aligned_cols=192 Identities=12% Similarity=0.060 Sum_probs=113.4
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEE
Q 019103 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ 184 (346)
....++||| +|+.++...+...|.++|+++|+.......+.....-..+++|++|+.+...+ ..++++|.++.+ ..
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~ 277 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR 277 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE
Confidence 467888998 45444333456789999999998755444554444455667788887654333 468999987654 33
Q ss_pred EEecC--CCceeEEeeCCCEEE-EEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEE-EEecC-CCe
Q 019103 185 EFTHQ--MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW-ANVWQ-TDC 257 (346)
Q Consensus 185 ti~~~--~peGwGLt~Dg~~Ly-vSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Ly-aNv~~-sn~ 257 (346)
++... ....-..++||++|+ +|| |..+|+.+|..+.+.. ++... |.....+ .+...+.+|+ ++... ...
T Consensus 278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~--g~~~~~~-~~SpDG~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT--GSYNTSP-RISPDGKLLAYISRVGGAFK 353 (427)
T ss_pred ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC--CCCcCce-EECCCCCEEEEEEccCCcEE
Confidence 34321 112235789999865 676 4678999998776543 33321 1110000 1222333554 44332 236
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC--CcEEEEEE
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW--PKLYEINL 319 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W--p~l~ev~l 319 (346)
|.++|..+|+.. .+.- . . .-...+|+|+++.|+.+...- ..+|.+.+
T Consensus 354 I~v~d~~~g~~~-~lt~-~-~------------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 354 LYVQDLATGQVT-ALTD-T-T------------RDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEEECCCCCeE-EccC-C-C------------CccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 999999999854 2211 1 0 013468999999988776433 34666655
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.5e-05 Score=78.47 Aligned_cols=202 Identities=16% Similarity=0.122 Sum_probs=131.3
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe----eEEEEEEeCCEEEEEEee-----CCEEEEEECC
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY----FGEGLTLLGEKLFQVTWL-----QKTGFIYDQN 178 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~----FgeGit~~g~~LY~ltw~-----~~~v~V~D~~ 178 (346)
.|+++. ++++|+++. +..|..+|.+|||++=+..+.... +.-.-.+.+++||+.... ++.+..+|++
T Consensus 114 rg~av~-~~~v~v~t~---dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~ 189 (527)
T TIGR03075 114 RGVALY-DGKVFFGTL---DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAK 189 (527)
T ss_pred ccceEE-CCEEEEEcC---CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECC
Confidence 577776 579999875 358999999999998777653211 111223467899998642 5789999999
Q ss_pred CCcEEEEEecCCC-------------------------------ceeE-EeeC--CCEEEEEC-------C---------
Q 019103 179 NLNKLEEFTHQMK-------------------------------DGWG-LATD--GKVLFGSD-------G--------- 208 (346)
Q Consensus 179 tl~~i~ti~~~~p-------------------------------eGwG-Lt~D--g~~LyvSd-------G--------- 208 (346)
|++++-++....+ .-|+ ++.| .+.+|+.- +
T Consensus 190 TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~ 269 (527)
T TIGR03075 190 TGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLY 269 (527)
T ss_pred CCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcc
Confidence 9999998765201 1132 2444 66888832 3
Q ss_pred CCeEEEEeCCCCcEEEEEEecc-C-------CeeeeeceeeEe-eCCE---EEEEecCCCeEEEEeCCCCeEEEE-----
Q 019103 209 SSMLYQIDPQTLKVIRKDIVRY-K-------GREVRNLNELEF-IKGE---VWANVWQTDCIARISHEDGVVLGW----- 271 (346)
Q Consensus 209 s~~l~vIDp~T~kvi~~I~V~~-~-------G~pv~~lNELE~-~~G~---LyaNv~~sn~I~vID~~TG~Vv~~----- 271 (346)
++.|.-+|++|+|++=..+... + ..| .| ++. .||+ +.+-.-.+..+.++|.+||+.+..
T Consensus 270 ~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p--~l--~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~ 345 (527)
T TIGR03075 270 TSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM--IL--FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVD 345 (527)
T ss_pred ceeEEEEccccCCEEEeeeCCCCCCccccCCCCc--EE--EEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccC
Confidence 4589999999999974444421 1 112 12 232 3554 777776788999999999998622
Q ss_pred -------EECCchhhhh-hh---------------ccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 272 -------VLLPNLRERL-VA---------------AGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 272 -------I~l~~l~~~~-~~---------------~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
++....++.. .+ .+...+.-..++||||+++.+||--.+++..+.-
T Consensus 346 ~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~ 414 (527)
T TIGR03075 346 TVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEP 414 (527)
T ss_pred CcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccc
Confidence 1111101100 00 0112234567899999999999999998877663
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00017 Score=72.83 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=110.4
Q ss_pred ceeEEEecCCE-E-EEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcE
Q 019103 107 TQGLLYAENDT-L-FESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNK 182 (346)
Q Consensus 107 TqGL~~~~d~~-L-yeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~ 182 (346)
.....++|||+ | |.+.+ .+...|.++|+.+|+......++.....-..+++|++|+.+...++ .++++|.++.+.
T Consensus 206 v~~p~wSPDG~~la~~s~~-~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFE-NKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP 284 (429)
T ss_pred cccceEcCCCCEEEEEEec-CCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence 35788999984 4 44433 3557899999999975444444433333446667888887655544 478889877654
Q ss_pred EEEEecC--CCceeEEeeCCCEEE-EEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCe
Q 019103 183 LEEFTHQ--MKDGWGLATDGKVLF-GSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDC 257 (346)
Q Consensus 183 i~ti~~~--~peGwGLt~Dg~~Ly-vSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~ 257 (346)
.++..+ ......+++||++|+ ++| |.-+|+.+|..+.... .+ +..+ ..+ .+...+.+|++.. .+.
T Consensus 285 -~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-~l--~~~~---~~~-~~SpDG~~ia~~~--~~~ 354 (429)
T PRK01742 285 -SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-LV--GGRG---YSA-QISADGKTLVMIN--GDN 354 (429)
T ss_pred -EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee--cCCC---CCc-cCCCCCCEEEEEc--CCC
Confidence 334322 123456789999765 576 4668999998766542 22 2222 111 1222334565443 367
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
|.++|..+|+..... - ... -...+|+|+++.++.+.. -.....+.+
T Consensus 355 i~~~Dl~~g~~~~lt-~-~~~-------------~~~~~~sPdG~~i~~~s~-~g~~~~l~~ 400 (429)
T PRK01742 355 VVKQDLTSGSTEVLS-S-TFL-------------DESPSISPNGIMIIYSST-QGLGKVLQL 400 (429)
T ss_pred EEEEECCCCCeEEec-C-CCC-------------CCCceECCCCCEEEEEEc-CCCceEEEE
Confidence 888999999864221 1 110 023679999998877653 233344444
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00032 Score=74.06 Aligned_cols=249 Identities=15% Similarity=0.121 Sum_probs=146.5
Q ss_pred ccccceeeeccCCchhhHHHHHHHhheeccccccccccCCCCCCCCceeee----EEEEEEecCCCCcceeEEEecCCEE
Q 019103 43 NHFSRFRHYNKGIPAVMLIFFFLCGFVLLCISSNMWIRFPGVDQSPSIYTI----QVVNEFPHDPRAFTQGLLYAENDTL 118 (346)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~----~Vv~t~phd~~~FTqGL~~~~d~~L 118 (346)
-||-||..|-- ..+++++........+.......+++|.+ =....++.+..--++||++.+.++|
T Consensus 15 vhrcrf~d~~P-----------s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RL 83 (691)
T KOG2048|consen 15 VHRCRFVDYKP-----------SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRL 83 (691)
T ss_pred EEEEEEEeeec-----------cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeE
Confidence 46777776652 34455544333333222222333333322 2334455556666799999987899
Q ss_pred EEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEe
Q 019103 119 FESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLA 197 (346)
Q Consensus 119 yeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt 197 (346)
|-+ |+ +.+|..||+.++|.+..+. .+...+...+.+.++.+-+. -.++.++.++....++.-........|-.|+
T Consensus 84 FS~-g~--sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig-cddGvl~~~s~~p~~I~~~r~l~rq~sRvLs 159 (691)
T KOG2048|consen 84 FSS-GL--SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIG-CDDGVLYDFSIGPDKITYKRSLMRQKSRVLS 159 (691)
T ss_pred Eee-cC--CceEEEEecccCceeEEecCCCcceeEEEeCCccceEEee-cCCceEEEEecCCceEEEEeecccccceEEE
Confidence 955 63 4499999999999888886 46677777666666666655 2355777888777777666555422355543
Q ss_pred ----eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe-----eCCEEEEEecCCCeEEEEeCCCCeE
Q 019103 198 ----TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-----IKGEVWANVWQTDCIARISHEDGVV 268 (346)
Q Consensus 198 ----~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~-----~~G~LyaNv~~sn~I~vID~~TG~V 268 (346)
+++.+++.--.+..|.++|..+......+..+.++-.-. -+-+-| -++.|-... -+..|..=|+++|..
T Consensus 160 lsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~-~~~iVWSv~~Lrd~tI~sgD-S~G~V~FWd~~~gTL 237 (691)
T KOG2048|consen 160 LSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR-EPTIVWSVLFLRDSTIASGD-SAGTVTFWDSIFGTL 237 (691)
T ss_pred EEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC-CceEEEEEEEeecCcEEEec-CCceEEEEcccCcch
Confidence 456667664445679999999988877555543211000 000111 022222222 133333334444433
Q ss_pred EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec
Q 019103 269 LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322 (346)
Q Consensus 269 v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~ 322 (346)
+..... -..+|+ .+|.+++++++|++| -.|++++.++..-
T Consensus 238 iqS~~~------------h~adVl-~Lav~~~~d~vfsaG-vd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 238 IQSHSC------------HDADVL-ALAVADNEDRVFSAG-VDPKIIQYSLTTN 277 (691)
T ss_pred hhhhhh------------hhccee-EEEEcCCCCeEEEcc-CCCceEEEEecCC
Confidence 332211 123454 699999999999987 5799999998764
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.8e-05 Score=76.44 Aligned_cols=159 Identities=16% Similarity=0.139 Sum_probs=109.0
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-------eeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcE
Q 019103 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-------YFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 111 ~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-------~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
.+. ++++|+++. +..|..+|++||+++=+.++... .+..|+++.+ +++|+.+. ++.++.+|++|+++
T Consensus 58 vv~-~g~vy~~~~---~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-~g~v~AlD~~TG~~ 132 (488)
T cd00216 58 LVV-DGDMYFTTS---HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-DGRLVALDAETGKQ 132 (488)
T ss_pred EEE-CCEEEEeCC---CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-CCeEEEEECCCCCE
Confidence 444 689999875 35999999999998877765432 2445667777 99999886 58999999999999
Q ss_pred EEEEecCCC--ceeEE----eeCCCEEEEECC---------CCeEEEEeCCCCcEEEEEEeccC-C--------------
Q 019103 183 LEEFTHQMK--DGWGL----ATDGKVLFGSDG---------SSMLYQIDPQTLKVIRKDIVRYK-G-------------- 232 (346)
Q Consensus 183 i~ti~~~~p--eGwGL----t~Dg~~LyvSdG---------s~~l~vIDp~T~kvi~~I~V~~~-G-------------- 232 (346)
+-++....+ .++.+ +-+++.+|+... +..|+-+|++|++++=+...... .
T Consensus 133 ~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred eeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 999987522 23332 224577877431 46899999999998866655321 0
Q ss_pred ---eeeeeceeeEeeCCEEEEEecC-----------------CCeEEEEeCCCCeEEEEEEC
Q 019103 233 ---REVRNLNELEFIKGEVWANVWQ-----------------TDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 233 ---~pv~~lNELE~~~G~LyaNv~~-----------------sn~I~vID~~TG~Vv~~I~l 274 (346)
-.+...=-++..+|.||+..-. ++.|+.+|.+||+++=...+
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence 0000000112235789987522 34899999999999866644
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.29 E-value=5e-05 Score=75.33 Aligned_cols=192 Identities=15% Similarity=0.146 Sum_probs=123.4
Q ss_pred CEEEEEcC--CCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE-Eee--------CCEEEEEECCCCcEEE
Q 019103 116 DTLFESTG--LYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV-TWL--------QKTGFIYDQNNLNKLE 184 (346)
Q Consensus 116 ~~LyeStG--lyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l-tw~--------~~~v~V~D~~tl~~i~ 184 (346)
+++|+... ....+++.++|.+++|++..++.+-.. ...++.+++++|++ |+. ...|.+||++||+..+
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~ 81 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG 81 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeecccCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc
Confidence 35665432 112369999999999999999765321 12256678999986 444 4679999999999999
Q ss_pred EEecCC---------CceeEEeeCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEec
Q 019103 185 EFTHQM---------KDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW 253 (346)
Q Consensus 185 ti~~~~---------peGwGLt~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~ 253 (346)
+|..+. +.-.+|+.||+++||.| . +..|.|+|.+..++++.|.+. |.-.- .-..+...+.-|
T Consensus 82 EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i----yP~~~~~F~~lC- 154 (342)
T PF06433_consen 82 EIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI----YPSGNRGFSMLC- 154 (342)
T ss_dssp EEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE----EEEETTEEEEEE-
T ss_pred eEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE----EecCCCceEEEe-
Confidence 887541 22245889999999999 3 889999999999999999982 23211 112244544455
Q ss_pred CCCeEEEEeCC-CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC-EEEEecCCCCcEEEEEEeecccc
Q 019103 254 QTDCIARISHE-DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN-RIFVTGKLWPKLYEINLREMKRE 325 (346)
Q Consensus 254 ~sn~I~vID~~-TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~LfVTGK~Wp~l~ev~l~~~~~~ 325 (346)
.+..+..|..+ .|++..+- . .+.. . ......+-=||+..++ .+|+| +-+.||.++|......
T Consensus 155 ~DGsl~~v~Ld~~Gk~~~~~-t-~~F~--~----~~dp~f~~~~~~~~~~~~~F~S--y~G~v~~~dlsg~~~~ 218 (342)
T PF06433_consen 155 GDGSLLTVTLDADGKEAQKS-T-KVFD--P----DDDPLFEHPAYSRDGGRLYFVS--YEGNVYSADLSGDSAK 218 (342)
T ss_dssp TTSCEEEEEETSTSSEEEEE-E-EESS--T----TTS-B-S--EEETTTTEEEEEB--TTSEEEEEEETTSSEE
T ss_pred cCCceEEEEECCCCCEeEee-c-cccC--C----CCcccccccceECCCCeEEEEe--cCCEEEEEeccCCccc
Confidence 46666666666 67776332 1 1110 0 1122444456665554 55688 8899999998644333
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00021 Score=70.51 Aligned_cols=183 Identities=14% Similarity=0.163 Sum_probs=110.6
Q ss_pred EEEEEc-CCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEEecC-CCc
Q 019103 117 TLFEST-GLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEFTHQ-MKD 192 (346)
Q Consensus 117 ~LyeSt-Glyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti~~~-~pe 192 (346)
.+|++. |..+...|.+.|.+.++...-...+...+.-..+++|++|+.+.+.+ ..++++|.++.+........ ...
T Consensus 158 ~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~ 237 (417)
T TIGR02800 158 IAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG 237 (417)
T ss_pred EEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc
Confidence 355553 22356789999987665433333333344445677888887776654 67999999887654332222 234
Q ss_pred eeEEeeCCCEEEEE-C--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEE-EEec-CCCeEEEEeCCC
Q 019103 193 GWGLATDGKVLFGS-D--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVW-QTDCIARISHED 265 (346)
Q Consensus 193 GwGLt~Dg~~LyvS-d--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Ly-aNv~-~sn~I~vID~~T 265 (346)
...+++||+.|+++ + +...|+.+|..+.+.. .+.... +.. .+..+. || +|+ +... ....|.++|.++
T Consensus 238 ~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~-~~~----~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 238 APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGP-GID----TEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred ceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCC-CCC----CCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 45689999988764 3 4568999999887653 232211 111 011222 44 554 4432 234799999999
Q ss_pred CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019103 266 GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 266 G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
+++. .+... ......++|+|+++.++.+....+ .||.+++
T Consensus 312 ~~~~-~l~~~-------------~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 312 GEVR-RLTFR-------------GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCEE-EeecC-------------CCCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 8853 33221 112345789999999999887654 5666655
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00012 Score=74.65 Aligned_cols=172 Identities=14% Similarity=0.116 Sum_probs=102.7
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEE--EEEecCCCceeEEeeCCCE
Q 019103 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKL--EEFTHQMKDGWGLATDGKV 202 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i--~ti~~~~peGwGLt~Dg~~ 202 (346)
..+|.+.|.+..+.......+.....-..+++|++|+.+.+.+ ..++++|..+++.. ..++. ......++|||++
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g-~~~~~~wSPDG~~ 275 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG-INGAPRFSPDGKK 275 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC-CcCCeeECCCCCE
Confidence 3578888987765432222332223334667888876665443 46999999887642 22221 2234568999998
Q ss_pred EEEE---CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEec--CCCeEEEEeCCCCeEEEEEECC
Q 019103 203 LFGS---DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVW--QTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 203 LyvS---dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~--~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
|+++ +|...|+++|.++.++. ++.-.. +. ..+..+. || +|+.+.. ....|.++|.++|++.. +...
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~-~~----~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~ 348 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALT-RITRHR-AI----DTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE 348 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeE-ECccCC-CC----ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC
Confidence 8663 35668999999987753 232221 11 1123333 44 5654332 34679999999998643 3221
Q ss_pred chhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019103 276 NLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 276 ~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
. ....+.+|+|+++.++.++..-+ .||.+.+
T Consensus 349 g-------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 349 G-------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred C-------------CCCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence 1 01124689999999988876543 5666665
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00026 Score=69.00 Aligned_cols=210 Identities=16% Similarity=0.231 Sum_probs=127.6
Q ss_pred eeeeEEEEE-EecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE-E
Q 019103 90 IYTIQVVNE-FPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV-T 166 (346)
Q Consensus 90 ~~t~~Vv~t-~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l-t 166 (346)
.|...+.+. +- +-..=+-+|+|+|+. +||..++ ....|..+++. |+++++++++.-.=+|+|...++-.|++ +
T Consensus 71 ~y~~~i~akpi~-g~~~nvS~LTynp~~rtLFav~n--~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig~n~fvi~d 146 (316)
T COG3204 71 EYRARIDAKPIL-GETANVSSLTYNPDTRTLFAVTN--KPAAIVELTKE-GDLIRTIPLTGFSDPETIEYIGGNQFVIVD 146 (316)
T ss_pred CceEEEeccccc-cccccccceeeCCCcceEEEecC--CCceEEEEecC-CceEEEecccccCChhHeEEecCCEEEEEe
Confidence 345555554 21 122225799999876 6888877 55678777664 9999999997644479999998777766 6
Q ss_pred eeCCEEEEE--ECCCCcEE-E--EEecC-------CCceeEEeeCCCEEEEECCCC--eEEEEe--CCCCcEEEEE-Eec
Q 019103 167 WLQKTGFIY--DQNNLNKL-E--EFTHQ-------MKDGWGLATDGKVLFGSDGSS--MLYQID--PQTLKVIRKD-IVR 229 (346)
Q Consensus 167 w~~~~v~V~--D~~tl~~i-~--ti~~~-------~peGwGLt~Dg~~LyvSdGs~--~l~vID--p~T~kvi~~I-~V~ 229 (346)
.+.+.++++ |++|.... + .|+.+ .=||.+-.+.+++||++-.-+ .|+.++ +..+.+.... +..
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccc
Confidence 788887774 55533221 1 33332 127777777789999986533 666665 2222221110 000
Q ss_pred cCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 230 YKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 230 ~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+.+--+..+.-|+|. ++.|+|=.-.+..++.+|. +|++++.+.+..-...|. .+.-.+.|||.|++ +.|||+
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~----~dipqaEGiamDd~-g~lYIv 300 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLS----SDIPQAEGIAMDDD-GNLYIV 300 (316)
T ss_pred ccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCc----ccCCCcceeEECCC-CCEEEE
Confidence 111122233346666 6778886666777888875 577788886632111111 22336799999965 568888
Q ss_pred cC
Q 019103 308 GK 309 (346)
Q Consensus 308 GK 309 (346)
..
T Consensus 301 SE 302 (316)
T COG3204 301 SE 302 (316)
T ss_pred ec
Confidence 54
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0003 Score=68.55 Aligned_cols=175 Identities=16% Similarity=0.146 Sum_probs=125.1
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCC
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQK 170 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~ 170 (346)
+=+-|+.++- .+.-...|..+|-+..|.|+++ +.+|+.||+++-+-...+.+..++- ++.+. +.++++.-.++
T Consensus 89 dNkylRYF~G-H~~~V~sL~~sP~~d~FlS~S~--D~tvrLWDlR~~~cqg~l~~~~~pi---~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 89 DNKYLRYFPG-HKKRVNSLSVSPKDDTFLSSSL--DKTVRLWDLRVKKCQGLLNLSGRPI---AAFDPEGLIFALANGSE 162 (311)
T ss_pred cCceEEEcCC-CCceEEEEEecCCCCeEEeccc--CCeEEeeEecCCCCceEEecCCCcc---eeECCCCcEEEEecCCC
Confidence 3355666662 2333478999998889999884 4599999999887777777766552 25554 55666666667
Q ss_pred EEEEEECCCC--cEEEEEecC--CC---ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe
Q 019103 171 TGFIYDQNNL--NKLEEFTHQ--MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (346)
Q Consensus 171 ~v~V~D~~tl--~~i~ti~~~--~p---eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~ 243 (346)
.|.+||.+.+ ....+|.++ .. .+..+++|||.+.+|...+.++++|+=+++++.+.....++..+. -+..+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~--~~a~f 240 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP--LSATF 240 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc--eeEEE
Confidence 9999999865 455566553 11 344589999999999999999999999999999888865433222 12223
Q ss_pred -eCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019103 244 -IKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 244 -~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
.|++-......+.+|.+=+.+||+.++...-
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 2665444555678899999999999888854
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00024 Score=68.86 Aligned_cols=192 Identities=14% Similarity=0.130 Sum_probs=113.6
Q ss_pred eeEEEecCCEEEEE-cCC---------CCCCeEEEEECCCCcEEEEeccCCC-----eeEEEEEEeC-------CEEEEE
Q 019103 108 QGLLYAENDTLFES-TGL---------YGRSSVRRVALETGKVEAINQMEGS-----YFGEGLTLLG-------EKLFQV 165 (346)
Q Consensus 108 qGL~~~~d~~LyeS-tGl---------yg~s~V~~iDl~Tgkv~~~~~l~~~-----~FgeGit~~g-------~~LY~l 165 (346)
+++.++..|+||+= +|. .+.-+|..||+.|+++++++.+++. -|-.-+.++. ..+|++
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt 83 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT 83 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe
Confidence 78999999999975 443 3446999999999999999988743 3445566665 589999
Q ss_pred EeeCCEEEEEECCCCcEEEEEe--------------------cC-CCceeEEee---CCCEEEEEC-CCCeEEEEeCCCC
Q 019103 166 TWLQKTGFIYDQNNLNKLEEFT--------------------HQ-MKDGWGLAT---DGKVLFGSD-GSSMLYQIDPQTL 220 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~~i~ti~--------------------~~-~peGwGLt~---Dg~~LyvSd-Gs~~l~vIDp~T~ 220 (346)
+-...-+.|||.++.+--+-.. .. .-.|.++++ ||++||-.= .+..+|-|.++-+
T Consensus 84 D~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L 163 (287)
T PF03022_consen 84 DSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVL 163 (287)
T ss_dssp ETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHH
T ss_pred CCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHh
Confidence 9999999999999875533221 00 123445554 788998854 6778988875332
Q ss_pred c---EEE------E-EEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeE---EEEEECCchhhhhhhccC
Q 019103 221 K---VIR------K-DIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVV---LGWVLLPNLRERLVAAGY 286 (346)
Q Consensus 221 k---vi~------~-I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~V---v~~I~l~~l~~~~~~~~~ 286 (346)
+ ... . ..++..| .+..-+.++ +|.||.+....+.|...|+.+--. ...+-- + .
T Consensus 164 ~~~~~~~~~~~~~~v~~lG~k~---~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~-d---------~ 230 (287)
T PF03022_consen 164 RDPSLSDAQALASQVQDLGDKG---SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ-D---------P 230 (287)
T ss_dssp CSTT--HHH-HHHT-EEEEE------SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-----------C
T ss_pred hCccccccccccccceeccccC---CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE-c---------C
Confidence 1 111 1 1223322 111224444 689999999999999999997211 122211 0 0
Q ss_pred CCCceeeEEEEeC--CCCEEEEecCCCC
Q 019103 287 NGIDVLNGIAWDS--NRNRIFVTGKLWP 312 (346)
Q Consensus 287 ~~~~vlNGIA~d~--~~~~LfVTGK~Wp 312 (346)
.....|.|+++++ ++...+++++...
T Consensus 231 ~~l~~pd~~~i~~~~~g~L~v~snrl~~ 258 (287)
T PF03022_consen 231 RTLQWPDGLKIDPEGDGYLWVLSNRLQR 258 (287)
T ss_dssp C-GSSEEEEEE-T--TS-EEEEE-S--S
T ss_pred ceeeccceeeeccccCceEEEEECcchH
Confidence 1144789999998 5544445554443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0017 Score=70.58 Aligned_cols=213 Identities=12% Similarity=0.056 Sum_probs=125.7
Q ss_pred EEEEEEe-cCCCCcceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019103 94 QVVNEFP-HDPRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
+.+.++. |. ....++.|++ ++.++.+++ .+..|++||+.+++.+..+..........+...++..+++.-.++.
T Consensus 566 ~~~~~~~~H~--~~V~~l~~~p~~~~~L~Sgs--~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~ 641 (793)
T PLN00181 566 QLVTEMKEHE--KRVWSIDYSSADPTLLASGS--DDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHK 641 (793)
T ss_pred eEEEEecCCC--CCEEEEEEcCCCCCEEEEEc--CCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCe
Confidence 3445553 43 3346999985 667888877 5669999999999888777654433332222233455556667899
Q ss_pred EEEEECCCCc-EEEEEecCCCceeEEe-eCCCEEEEECCCCeEEEEeCCCC------cEEEEEEeccCCeeeeeceeeEe
Q 019103 172 GFIYDQNNLN-KLEEFTHQMKDGWGLA-TDGKVLFGSDGSSMLYQIDPQTL------KVIRKDIVRYKGREVRNLNELEF 243 (346)
Q Consensus 172 v~V~D~~tl~-~i~ti~~~~peGwGLt-~Dg~~LyvSdGs~~l~vIDp~T~------kvi~~I~V~~~G~pv~~lNELE~ 243 (346)
+.++|..+.+ .+.++......-+.+. .|++.|+.+..+++|.++|..+. +.+.++.-.. . ..+.+.+
T Consensus 642 I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~---~i~~v~~ 716 (793)
T PLN00181 642 VYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--N---VKNFVGL 716 (793)
T ss_pred EEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--C---CeeEEEE
Confidence 9999998765 3444432111112232 37788877777889999998643 2333332211 1 1223333
Q ss_pred e-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 244 I-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 244 ~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
. +|.+.|..-.++.|.+.|..+...+....+..................+.++|+++++.|+.++ .-+.|.-
T Consensus 717 s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~-~dG~I~i 789 (793)
T PLN00181 717 SVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN-STGNIKI 789 (793)
T ss_pred cCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec-CCCcEEE
Confidence 3 4555555556889999999888766655442211110000011234678999999988766554 4454443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.3e-05 Score=78.58 Aligned_cols=154 Identities=13% Similarity=0.066 Sum_probs=105.7
Q ss_pred EEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCce-----------eEEeeCCCEEEEECCCCeEEEEeCCCCcEEE
Q 019103 156 TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDG-----------WGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (346)
Q Consensus 156 t~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peG-----------wGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~ 224 (346)
.+.+++||+.+.. +.++.+|++|++++-++....+.+ -+++..++++|+++.++.|+-+|++|++++=
T Consensus 66 vv~~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 66 LVVDGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred EEECCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 4578999998875 579999999999999987642211 1234457899999888999999999999987
Q ss_pred EEEeccCCeeeeeceeeEeeCCEEEEEecC-----CCeEEEEeCCCCeEEEEEECCchhhh---------hhhc------
Q 019103 225 KDIVRYKGREVRNLNELEFIKGEVWANVWQ-----TDCIARISHEDGVVLGWVLLPNLRER---------LVAA------ 284 (346)
Q Consensus 225 ~I~V~~~G~pv~~lNELE~~~G~LyaNv~~-----sn~I~vID~~TG~Vv~~I~l~~l~~~---------~~~~------ 284 (346)
+..+.+..........-.+.+|.||+.... ...|..+|.+||+++=..+.-.-.+. ..+.
T Consensus 145 ~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 766643211111111122458899987642 46899999999999876655221100 0000
Q ss_pred ----cCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 285 ----GYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 285 ----~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
..-..++.+.++|||+.+.+|+.=.+
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGn 254 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGN 254 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCC
Confidence 01235788899999999999986555
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00035 Score=67.35 Aligned_cols=192 Identities=13% Similarity=0.111 Sum_probs=136.5
Q ss_pred EEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe----e
Q 019103 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW----L 168 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw----~ 168 (346)
+.+.+|. |...-| -+.++.+.+..++.. .+.++..||..|||+++..+.+...-...+...|+.+.+.+- +
T Consensus 43 erlGty~GHtGavW--~~Did~~s~~liTGS--AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~ 118 (327)
T KOG0643|consen 43 ERLGTYDGHTGAVW--CCDIDWDSKHLITGS--ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGY 118 (327)
T ss_pred ceeeeecCCCceEE--EEEecCCcceeeecc--ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCc
Confidence 5677775 544444 566665555555543 678999999999999999999887767777777877666553 3
Q ss_pred CCEEEEEECCC-------CcEEEEEecC----CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE-EEEEEeccCCeeee
Q 019103 169 QKTGFIYDQNN-------LNKLEEFTHQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVRYKGREVR 236 (346)
Q Consensus 169 ~~~v~V~D~~t-------l~~i~ti~~~----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv-i~~I~V~~~G~pv~ 236 (346)
...|.+||... -+.+-.|+.+ ...+|| +-++.|+.-..+..|..+|..++++ +....+.. .
T Consensus 119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg--~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~--~--- 191 (327)
T KOG0643|consen 119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG--PLGETIIAGHEDGSISIYDARTGKELVDSDEEHS--S--- 191 (327)
T ss_pred ceEEEEEEccCChhhhcccCceEEecCCccceeeeeec--ccCCEEEEecCCCcEEEEEcccCceeeechhhhc--c---
Confidence 67899999873 3345555543 124444 5589998888899999999999754 44444422 2
Q ss_pred eceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 237 NLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 237 ~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
.+|.|.+. |+.-|++--.+.+--.+|..|.+|+.++-. + ..+|..|++|-.+.+...|.+
T Consensus 192 ~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e-------------~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 192 KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-E-------------RPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ccccccccCCcceEEecccCccceeeeccceeeEEEeee-c-------------ccccceecccccceEEecCCc
Confidence 56777665 567888888788888999999999999955 1 146889999977655554443
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0002 Score=73.14 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=123.7
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~ 171 (346)
..++++. +...+...+.|++++++++|.+ ++..|++||..+|+.+..+..... ..-+++. +++.|+.+ -.++.
T Consensus 237 ~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs--~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~-s~d~~ 311 (456)
T KOG0266|consen 237 RNLKTLK-GHSTYVTSVAFSPDGNLLVSGS--DDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSA-SYDGT 311 (456)
T ss_pred eEEEEec-CCCCceEEEEecCCCCEEEEec--CCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEc-CCCcc
Confidence 4556663 3455667999999999999988 678999999999999998876543 2334444 44556666 44999
Q ss_pred EEEEECCCCc--EEEEEecC-CC---ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCC-eeeeeceeeEee
Q 019103 172 GFIYDQNNLN--KLEEFTHQ-MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG-REVRNLNELEFI 244 (346)
Q Consensus 172 v~V~D~~tl~--~i~ti~~~-~p---eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G-~pv~~lNELE~~ 244 (346)
+.++|..+++ .++++.-. .+ .=.-++++++.+++.-.++.+..+|....+..+.......+ ..+.. + .-..
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 389 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFS-P-TLST 389 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEec-c-cccC
Confidence 9999999999 45665432 22 11236789999999888899999999999888777665443 11110 0 1133
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019103 245 KGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
+|+..+.......|.+-|+.++..+..+..
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~ 419 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGGILQRLEG 419 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccchhhhhcC
Confidence 566555555688999999999988877754
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00036 Score=67.73 Aligned_cols=204 Identities=15% Similarity=0.198 Sum_probs=139.1
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe-cc---------------------------
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QM--------------------------- 146 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l--------------------------- 146 (346)
-+++||.+..+-..|+.+.+||.+|++.+ +. .|.++|.+|+++.+-. +.
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~y 170 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDT--GL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAY 170 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecC--cc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccc
Confidence 46788887666667999999999998865 44 8999999988764432 11
Q ss_pred -----------------CCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCce-----eEEeeC-CCE
Q 019103 147 -----------------EGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDG-----WGLATD-GKV 202 (346)
Q Consensus 147 -----------------~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peG-----wGLt~D-g~~ 202 (346)
+..+. ||+.. ++.+|.+....+-+..+|+.+. .-..++. |++ -.+..| ..+
T Consensus 171 GrLdPa~~~i~vfpaPqG~gpy--Gi~atpdGsvwyaslagnaiaridp~~~-~aev~p~--P~~~~~gsRriwsdpig~ 245 (353)
T COG4257 171 GRLDPARNVISVFPAPQGGGPY--GICATPDGSVWYASLAGNAIARIDPFAG-HAEVVPQ--PNALKAGSRRIWSDPIGR 245 (353)
T ss_pred eecCcccCceeeeccCCCCCCc--ceEECCCCcEEEEeccccceEEcccccC-CcceecC--CCcccccccccccCccCc
Confidence 01122 33332 3679999999999999999888 3334443 333 123334 468
Q ss_pred EEEEC-CCCeEEEEeCCCCcEEEEEEec-cCCeeeeeceeeEeeC-CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhh
Q 019103 203 LFGSD-GSSMLYQIDPQTLKVIRKDIVR-YKGREVRNLNELEFIK-GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRE 279 (346)
Q Consensus 203 LyvSd-Gs~~l~vIDp~T~kvi~~I~V~-~~G~pv~~lNELE~~~-G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~ 279 (346)
+|+|+ +..+++-+||.+..-+ ..+.- .+.+|-. |-.++ |++|-.-|.++.|.+.||+|-+.. .+.. + +
T Consensus 246 ~wittwg~g~l~rfdPs~~sW~-eypLPgs~arpys----~rVD~~grVW~sea~agai~rfdpeta~ft-v~p~-p-r- 316 (353)
T COG4257 246 AWITTWGTGSLHRFDPSVTSWI-EYPLPGSKARPYS----MRVDRHGRVWLSEADAGAIGRFDPETARFT-VLPI-P-R- 316 (353)
T ss_pred EEEeccCCceeeEeCcccccce-eeeCCCCCCCcce----eeeccCCcEEeeccccCceeecCcccceEE-EecC-C-C-
Confidence 99998 7999999999986633 34442 2233322 43333 799999999999999999998753 2222 1 1
Q ss_pred hhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeecccc
Q 019103 280 RLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRE 325 (346)
Q Consensus 280 ~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~ 325 (346)
+ ..+-|+.++..+.+|.|-..=+.+...|..+++++
T Consensus 317 -------~---n~gn~ql~gr~ge~W~~e~gvd~lv~~r~~~~~~~ 352 (353)
T COG4257 317 -------P---NSGNIQLDGRPGELWFTEAGVDALVTTRIGYLDTR 352 (353)
T ss_pred -------C---CCCceeccCCCCceeecccCcceeEEEEeeecccC
Confidence 0 12347888989999999887777777777666543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00062 Score=72.00 Aligned_cols=201 Identities=13% Similarity=0.103 Sum_probs=129.2
Q ss_pred cceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 106 FTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 106 FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
....+.|+|++. ++.+++ .+..|++||+.+++....+..+..........+|. +++++-.++.+.++|+.+++.+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEE
Confidence 347899999875 556766 45699999999998777766555444433333444 55667788999999999999998
Q ss_pred EEecC-CC-ce---e--EEeeCCCEEEEE--CC--CCeEEEEeCCC-CcEEEEEEeccCCeeeeeceeeEeeCCEEEEEe
Q 019103 185 EFTHQ-MK-DG---W--GLATDGKVLFGS--DG--SSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (346)
Q Consensus 185 ti~~~-~p-eG---w--GLt~Dg~~LyvS--dG--s~~l~vIDp~T-~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv 252 (346)
++... .. .. | ++++|++++..+ |+ ..+|.++|..+ .+.+..+.......++. .-....+|.+|+.-
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~--p~~D~~tg~l~lsG 281 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI--PHYDESTGLIYLIG 281 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE--EeeeCCCCCEEEEE
Confidence 88642 11 01 2 234788887763 32 24899999985 45565555543211211 01223368899888
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC---------EEEEecCCCCcEEEEEE-eec
Q 019103 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN---------RIFVTGKLWPKLYEINL-REM 322 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~---------~LfVTGK~Wp~l~ev~l-~~~ 322 (346)
-.++.|.+-|..++.+ ..+.- +.......|++|-|++. |+|-... -..|.-|.+ +|+
T Consensus 282 kGD~tIr~~e~~~~~~-~~l~~-----------~~s~~p~~g~~f~Pkr~~dv~~cEi~R~~kl~~-~~~i~pisf~vPR 348 (568)
T PTZ00420 282 KGDGNCRYYQHSLGSI-RKVNE-----------YKSCSPFRSFGFLPKQICDVYKCEIGRVYKNEN-NSSIRPISFYVPR 348 (568)
T ss_pred ECCCeEEEEEccCCcE-Eeecc-----------cccCCCccceEEccccccCchhhhHhHHhhhcC-CCeEEEEEEEecc
Confidence 7888899999888753 33321 11223457899999876 6664321 135777776 576
Q ss_pred cc
Q 019103 323 KR 324 (346)
Q Consensus 323 ~~ 324 (346)
++
T Consensus 349 k~ 350 (568)
T PTZ00420 349 KN 350 (568)
T ss_pred CC
Confidence 63
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.4e-05 Score=71.66 Aligned_cols=116 Identities=22% Similarity=0.341 Sum_probs=73.6
Q ss_pred ceeEEeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-EEEEEecCCCeEEEEeCCC--Ce
Q 019103 192 DGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQTDCIARISHED--GV 267 (346)
Q Consensus 192 eGwGLt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G-~LyaNv~~sn~I~vID~~T--G~ 267 (346)
.|....+|+++||+ +|....|+.+|. +++++++|++...|- ...++|.++ ...+.-...+.+.+++..+ ..
T Consensus 25 SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D----~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGD----YEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SS----EEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCC----ceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 44445567888887 788999999997 589999999965332 234778865 4445666678888777733 22
Q ss_pred E----EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC-cEEEEEEe
Q 019103 268 V----LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP-KLYEINLR 320 (346)
Q Consensus 268 V----v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp-~l~ev~l~ 320 (346)
+ +..+.+ ++. ...+.-+.|||||+.+++|||+-+.+| .||+++..
T Consensus 100 ~~~~~~~~~~l-~~~-------~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~ 149 (248)
T PF06977_consen 100 LDRADVQKISL-GFP-------NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGF 149 (248)
T ss_dssp --EEEEEEEE----S----------SS--EEEEEETTTTEEEEEEESSSEEEEEEEST
T ss_pred cchhhceEEec-ccc-------cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccc
Confidence 1 233443 221 023446899999999999999999999 58999873
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00024 Score=70.57 Aligned_cols=180 Identities=16% Similarity=0.155 Sum_probs=102.3
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcC----------CCCCCeEEEEECC--CCcEEEE-eccCCCeeEEEEEEe
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTG----------LYGRSSVRRVALE--TGKVEAI-NQMEGSYFGEGLTLL 158 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStG----------lyg~s~V~~iDl~--Tgkv~~~-~~l~~~~FgeGit~~ 158 (346)
.++++.+-|-=.+| .+|+++++|+||++.. ....++|.+++.. +|+.... +-.+.-.+..|++..
T Consensus 3 ~~~l~A~~p~~~~P--~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~ 80 (367)
T TIGR02604 3 KVTLFAAEPLLRNP--IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA 80 (367)
T ss_pred EEEEEECCCccCCC--ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe
Confidence 45666654443456 6999999999999852 1122489888765 3554332 223334456889886
Q ss_pred CCEEEEEEeeCCEEEEE-ECC-------CCcEE-EEEecC------CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEE
Q 019103 159 GEKLFQVTWLQKTGFIY-DQN-------NLNKL-EEFTHQ------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (346)
Q Consensus 159 g~~LY~ltw~~~~v~V~-D~~-------tl~~i-~ti~~~------~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi 223 (346)
.+.||++. ...++.+ |++ ..+++ ..++.+ .+.|..+.+|| +||+++|+..=....
T Consensus 81 ~~GlyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~------- 150 (367)
T TIGR02604 81 VGGVYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVT------- 150 (367)
T ss_pred cCCEEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceec-------
Confidence 54499986 4567766 543 12222 224321 13456667776 799999854111111
Q ss_pred EEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019103 224 RKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 224 ~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
..+.+.. ++. +....|.++||+++++. .+.. ++ ..++|+||++++ +
T Consensus 151 ------~~~~~~~--~~~-----------~~~g~i~r~~pdg~~~e-~~a~-G~------------rnp~Gl~~d~~G-~ 196 (367)
T TIGR02604 151 ------RPGTSDE--SRQ-----------GLGGGLFRYNPDGGKLR-VVAH-GF------------QNPYGHSVDSWG-D 196 (367)
T ss_pred ------cCCCccC--ccc-----------ccCceEEEEecCCCeEE-EEec-Cc------------CCCccceECCCC-C
Confidence 0000000 000 12456889999988753 3322 33 257999999976 4
Q ss_pred EEEecCCCCcEEEE
Q 019103 304 IFVTGKLWPKLYEI 317 (346)
Q Consensus 304 LfVTGK~Wp~l~ev 317 (346)
+|+|.-..+...+|
T Consensus 197 l~~tdn~~~~~~~i 210 (367)
T TIGR02604 197 VFFCDNDDPPLCRV 210 (367)
T ss_pred EEEEccCCCceeEE
Confidence 57775555555554
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00075 Score=70.96 Aligned_cols=198 Identities=12% Similarity=0.120 Sum_probs=120.3
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCC-C---CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLY-G---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL 168 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGly-g---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~ 168 (346)
+..+...|..... .+.+.. ++.||+..|.. + .+.+..||+.+++-...-+++..-...+++..+++||+.--.
T Consensus 284 W~~l~~mp~~r~~--~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 284 YSVISTIPNHIIN--YASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred EEECCCCCccccc--eEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCc
Confidence 3444445543333 355554 68999998853 2 257899999999765555665444456788899999998544
Q ss_pred C-----CEEEEEECCCCc--EEEEEecCCCceeEEeeCCCEEEEECC------------------------CCeEEEEeC
Q 019103 169 Q-----KTGFIYDQNNLN--KLEEFTHQMKDGWGLATDGKVLFGSDG------------------------SSMLYQIDP 217 (346)
Q Consensus 169 ~-----~~v~V~D~~tl~--~i~ti~~~~peGwGLt~Dg~~LyvSdG------------------------s~~l~vIDp 217 (346)
+ +.+.+||+.+.+ .+...+.+ ..+.+...-++.+|+.=| .+.+...||
T Consensus 361 ~~~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP 439 (557)
T PHA02713 361 NGTNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDT 439 (557)
T ss_pred CCCCCCceEEEEECCCCeEEECCCCCcc-cccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECC
Confidence 2 468999987654 33444443 244455555677888533 356899999
Q ss_pred CCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCC------CeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCc
Q 019103 218 QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQT------DCIARISHED-GVVLGWVLLPNLRERLVAAGYNGID 290 (346)
Q Consensus 218 ~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~s------n~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~ 290 (346)
++.+-.. +.....+.... .+...+|+|||--..+ +.|-+-||++ .+ |-.++.+... -
T Consensus 440 ~td~W~~---v~~m~~~r~~~-~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~---W~~~~~m~~~---------r 503 (557)
T PHA02713 440 VNNIWET---LPNFWTGTIRP-GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG---WELITTTESR---------L 503 (557)
T ss_pred CCCeEee---cCCCCcccccC-cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC---eeEccccCcc---------c
Confidence 9987642 21111111111 2556789999865332 3467889998 54 4434333211 1
Q ss_pred eeeEEEEeCCCCEEEEecCCCC
Q 019103 291 VLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 291 vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
.-.|+|.- +++|||+|...+
T Consensus 504 ~~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 504 SALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred ccceeEEE--CCEEEEEeeecc
Confidence 12445554 569999998766
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00053 Score=70.12 Aligned_cols=201 Identities=11% Similarity=0.077 Sum_probs=136.6
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEEC-CCCcEEEEec-cCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVAL-ETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl-~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
......++.|++|+...++.. .+.+|++||. ..++.++.+. .....+.-.+.+.+ ++.+.--.++.|.+.|..+.
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s--~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGS--DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred cccceeeeEECCCCcEEEEec--CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCC
Confidence 455557999999998777776 6779999999 5567777764 33445565566666 77788788899999999999
Q ss_pred cEEEEEecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEE--EEEEeccCCeeeeeceeeEee-CCEEEEEecCC
Q 019103 181 NKLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI--RKDIVRYKGREVRNLNELEFI-KGEVWANVWQT 255 (346)
Q Consensus 181 ~~i~ti~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi--~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s 255 (346)
+.++.++... --+..+.+||..|+.+..+..|.++|..+++.. +.+.=.....|+ +...+. +|+..+..+..
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPV---TSVQFSPNGKYLLSASLD 355 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCce---eEEEECCCCcEEEEecCC
Confidence 9999998642 233447789999999877999999999999843 333222221133 344443 56555555667
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+.+..-|..+++++..+...... ........+.+ +..+.++|-....|+-..+.
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNL----------VRCIFSPTLST-GGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CeEEEEEccCCcceeeecccCCc----------ceeEecccccC-CCCeEEEEeCCceEEEEeCC
Confidence 89999999999998888542211 01111122233 45666777777766665553
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0017 Score=62.10 Aligned_cols=191 Identities=13% Similarity=0.228 Sum_probs=131.8
Q ss_pred CCEEEEEcCCCCCCeEEEE----EC-CCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC
Q 019103 115 NDTLFESTGLYGRSSVRRV----AL-ETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~i----Dl-~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~ 189 (346)
++++|+..+..+. .|..+ |+ ..++..+.+.||-..-|-|-.+.++-||---...+.|..||.++.++.++...+
T Consensus 30 ~~~iy~~~~~~~~-~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~ 108 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELP 108 (250)
T ss_pred CCCEEEECccCCC-EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECC
Confidence 3489999887665 77777 34 556677777887656688888899988877778999999999999998665432
Q ss_pred -------CCce------eEEeeCCCEEEE---ECCCC---eEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE
Q 019103 190 -------MKDG------WGLATDGKVLFG---SDGSS---MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA 250 (346)
Q Consensus 190 -------~peG------wGLt~Dg~~Lyv---SdGs~---~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya 250 (346)
.+.. .-|+-|..=||| +.+++ .|..|||+|+++..++.+....+.+. +.=.+=|.|||
T Consensus 109 ~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~---naFmvCGvLY~ 185 (250)
T PF02191_consen 109 GAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRSAG---NAFMVCGVLYA 185 (250)
T ss_pred ccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchhhc---ceeeEeeEEEE
Confidence 1122 225667654444 44322 67899999999999999876433322 22234689998
Q ss_pred EecCC----CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 251 NVWQT----DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 251 Nv~~s----n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
..-.+ ..-.+.|+.+++-. .+++ .+.. .-....-|.|+|..++||+-...-=-.|.|++
T Consensus 186 ~~s~~~~~~~I~yafDt~t~~~~-~~~i-~f~~--------~~~~~~~l~YNP~dk~LY~wd~G~~v~Y~v~f 248 (250)
T PF02191_consen 186 TDSYDTRDTEIFYAFDTYTGKEE-DVSI-PFPN--------PYGNISMLSYNPRDKKLYAWDNGYQVTYDVRF 248 (250)
T ss_pred EEECCCCCcEEEEEEECCCCcee-ceee-eecc--------ccCceEeeeECCCCCeEEEEECCeEEEEEEEe
Confidence 65443 34578999998865 3444 2321 12245668899999999998766656666655
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0017 Score=64.94 Aligned_cols=183 Identities=11% Similarity=0.110 Sum_probs=105.6
Q ss_pred EEEEEcCC---CCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEEecC-C
Q 019103 117 TLFESTGL---YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEFTHQ-M 190 (346)
Q Consensus 117 ~LyeStGl---yg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti~~~-~ 190 (346)
.+|+++.. .+..+|.+.|.+.++......-+.....-..+++|++|+.+.+.+ ..++++|.++++...-.... .
T Consensus 165 ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~ 244 (430)
T PRK00178 165 ILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL 244 (430)
T ss_pred EEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC
Confidence 46766432 123468888998776433333333333344667888876555443 57999999887653322221 1
Q ss_pred CceeEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEE-Eec-CCCeEEEEeC
Q 019103 191 KDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWA-NVW-QTDCIARISH 263 (346)
Q Consensus 191 peGwGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Lya-Nv~-~sn~I~vID~ 263 (346)
.....++|||++|++ ++ |...|+++|.++.+... +.- ..+.. .+..+. || +|+. ..- ....|.++|.
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~-~~~~~----~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTN-HPAID----TEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-ccc-CCCCc----CCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 234568999998865 43 56689999999887542 221 11111 122333 44 5554 332 2457999999
Q ss_pred CCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC--CcEEEEEE
Q 019103 264 EDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW--PKLYEINL 319 (346)
Q Consensus 264 ~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W--p~l~ev~l 319 (346)
++|++. .+.... . .-...+|+|+++.++.+...- -.|+.+.+
T Consensus 319 ~~g~~~-~lt~~~-~------------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 319 NGGRAE-RVTFVG-N------------YNARPRLSADGKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred CCCCEE-EeecCC-C------------CccceEECCCCCEEEEEEccCCceEEEEEEC
Confidence 999863 332211 0 112367999999998876432 24555554
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.1e-05 Score=80.90 Aligned_cols=172 Identities=19% Similarity=0.240 Sum_probs=121.2
Q ss_pred EEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEE
Q 019103 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D 176 (346)
+..|+..- .||+.++-+++.+|+|..| -+.+||+.+...+..+.++... .++..+. ..++++.-.+=.+.+||
T Consensus 489 ~~ah~~~V--~gla~D~~n~~~vsa~~~G--ilkfw~f~~k~l~~~l~l~~~~--~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 489 SPAHKGEV--TGLAVDGTNRLLVSAGADG--ILKFWDFKKKVLKKSLRLGSSI--TGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred CccccCce--eEEEecCCCceEEEccCcc--eEEEEecCCcceeeeeccCCCc--ceeeeeehhhhhhhhcCceeEEEEE
Confidence 33564333 7999998889999999655 8999999999999999998764 2333332 44666667778899999
Q ss_pred CCCCcEEEEEe-cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeee-ece-e-eEee----CC-
Q 019103 177 QNNLNKLEEFT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVR-NLN-E-LEFI----KG- 246 (346)
Q Consensus 177 ~~tl~~i~ti~-~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~-~lN-E-LE~~----~G- 246 (346)
..|++++.+|. ++ .-.-+.+++||+||..+.-+.+|.++|..|...+.-+.|...-..+. .+| . |..+ +|
T Consensus 563 ~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gI 642 (910)
T KOG1539|consen 563 VVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGI 642 (910)
T ss_pred chhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceE
Confidence 99999999997 43 23556789999999999989999999999999999998865221111 011 1 2211 34
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECC
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
++|+|--+=..++.=-...+++..+..++
T Consensus 643 ylWsNkslF~~vs~r~~~~~~~~~~v~lP 671 (910)
T KOG1539|consen 643 YLWSNKSLFKSVSTRAIPADYVPSWVMLP 671 (910)
T ss_pred EEEEchhHheeccccccCcccccceeecC
Confidence 78888654444433333344555555443
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.7e-05 Score=69.78 Aligned_cols=129 Identities=17% Similarity=0.132 Sum_probs=98.7
Q ss_pred EEEEEecC-CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEE
Q 019103 95 VVNEFPHD-PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (346)
Q Consensus 95 Vv~t~phd-~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~ 173 (346)
++.+-+.+ +..|.+|++-.+ +.+|.=|= .+..-.++|.+|-+.+.+...+++ |=|++.+++.|++.+- +..+.
T Consensus 80 ~~~s~~l~~~~~FgEGit~~g-d~~y~LTw--~egvaf~~d~~t~~~lg~~~y~Ge--GWgLt~d~~~LimsdG-satL~ 153 (262)
T COG3823 80 EIFSEKLAPDTVFGEGITKLG-DYFYQLTW--KEGVAFKYDADTLEELGRFSYEGE--GWGLTSDDKNLIMSDG-SATLQ 153 (262)
T ss_pred EEEEeecCCccccccceeecc-ceEEEEEe--ccceeEEEChHHhhhhcccccCCc--ceeeecCCcceEeeCC-ceEEE
Confidence 44555555 689999999985 57776654 455788899999999999999877 4458889998887764 46778
Q ss_pred EEECCCCcEEEEEecCCCceeEEeeC------CCEEEEEC-CCCeEEEEeCCCCcEEEEEEecc
Q 019103 174 IYDQNNLNKLEEFTHQMKDGWGLATD------GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 174 V~D~~tl~~i~ti~~~~peGwGLt~D------g~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
..|++|++.+.++.+- -+|.-++.= ...||..= .++.|..|||++++|++.|.+..
T Consensus 154 frdP~tfa~~~~v~VT-~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 154 FRDPKTFAELDTVQVT-DDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred ecCHHHhhhcceEEEE-ECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccC
Confidence 8899999999999874 255444432 34455422 58899999999999999999854
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0018 Score=62.16 Aligned_cols=192 Identities=15% Similarity=0.210 Sum_probs=128.0
Q ss_pred CEEEEEcCC-CCCCeEEEE----ECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE--ec
Q 019103 116 DTLFESTGL-YGRSSVRRV----ALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF--TH 188 (346)
Q Consensus 116 ~~LyeStGl-yg~s~V~~i----Dl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti--~~ 188 (346)
++.|+..+- +....|..+ |+..++....+.+|...-|-|..+.++-||---..++.+..||.++.++.++- +.
T Consensus 35 ~~~wv~~~~~~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~ 114 (255)
T smart00284 35 SLYWYMPLNTRVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNG 114 (255)
T ss_pred ceEEEEccccCCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCc
Confidence 578887542 234567776 45567777777888766688899999999987777899999999999987543 32
Q ss_pred -----CCCceeE------EeeCCCEEEE---ECCC-C--eEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEE
Q 019103 189 -----QMKDGWG------LATDGKVLFG---SDGS-S--MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (346)
Q Consensus 189 -----~~peGwG------Lt~Dg~~Lyv---SdGs-~--~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaN 251 (346)
..+..|+ |+-|.+=||| +.++ + .|..|||.|++++.++......+.+. +.=.+=|.|||.
T Consensus 115 a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~---naFmvCGvLY~~ 191 (255)
T smart00284 115 AGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSAS---NAFMICGILYVT 191 (255)
T ss_pred cccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCccccc---ccEEEeeEEEEE
Confidence 1234342 5666554443 5442 2 45799999999999999976433222 222346899987
Q ss_pred ec----CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 252 VW----QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 252 v~----~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
.- .+..-...|+.|++-. .+++ .+... -....-|.|+|..++||+=+..--=+|.|+|.
T Consensus 192 ~s~~~~~~~I~yayDt~t~~~~-~~~i-~f~n~--------y~~~s~l~YNP~d~~LY~wdng~~l~Y~v~f~ 254 (255)
T smart00284 192 RSLGSKGEKVFYAYDTNTGKEG-HLDI-PFENM--------YEYISMLDYNPNDRKLYAWNNGHLVHYDIALK 254 (255)
T ss_pred ccCCCCCcEEEEEEECCCCccc-eeee-eeccc--------cccceeceeCCCCCeEEEEeCCeEEEEEEEec
Confidence 53 1223678899988743 4444 22211 12345588999999999987666666777664
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0016 Score=65.87 Aligned_cols=173 Identities=13% Similarity=0.154 Sum_probs=100.9
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEE
Q 019103 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVL 203 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~L 203 (346)
...|.++|.+.+....-..-+.....-..+++|++|+.+.+.+ ..++++|.++.+...-.... ......++|||++|
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 4578999987665433333333333334566788877766543 46999999877643221221 22345689999988
Q ss_pred EE-E--CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEE-Eec-CCCeEEEEeCCCCeEEEEEECCc
Q 019103 204 FG-S--DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWA-NVW-QTDCIARISHEDGVVLGWVLLPN 276 (346)
Q Consensus 204 yv-S--dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Lya-Nv~-~sn~I~vID~~TG~Vv~~I~l~~ 276 (346)
++ . +|...|+++|.++.++.. +.-. .+.. .+..+. || +|+. ... ....|.++|.++|++. .+...+
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~-~~~~----~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g 335 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTR-LTNH-FGID----TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQG 335 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEE-CccC-CCCc----cceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCC
Confidence 65 3 356689999999887532 2211 1111 123343 44 5554 332 2457999999988753 332211
Q ss_pred hhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019103 277 LRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 277 l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
.....++|+|+++.++.+....+ .|+.+.+
T Consensus 336 -------------~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 336 -------------NYNARASVSPDGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred -------------CCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence 01134799999999987754322 3555544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0029 Score=68.74 Aligned_cols=189 Identities=10% Similarity=0.071 Sum_probs=122.2
Q ss_pred eeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 108 QGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
.++.+.+. +..+.+++ .+..|++||..+++.+..+.-. ...+...+...++.++++.-.++.+.++|..+.+.+.+
T Consensus 536 ~~l~~~~~~~~~las~~--~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 536 SGICWNSYIKSQVASSN--FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred eeEEeccCCCCEEEEEe--CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 57777653 45666666 4569999999999887776532 33334333323455666666789999999999999998
Q ss_pred EecCCCceeEE---eeCCCEEEEECCCCeEEEEeCCCCcE-EEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEE
Q 019103 186 FTHQMKDGWGL---ATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI 261 (346)
Q Consensus 186 i~~~~peGwGL---t~Dg~~LyvSdGs~~l~vIDp~T~kv-i~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vI 261 (346)
+... ..-+.+ .++|+.|.+...++.|+++|..+.+. +.++. .+..++ +.+.+.++..+++.-.++.|.+.
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~--~h~~~V---~~v~f~~~~~lvs~s~D~~ikiW 687 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI--GHSKTV---SYVRFVDSSTLVSSSTDNTLKLW 687 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec--CCCCCE---EEEEEeCCCEEEEEECCCEEEEE
Confidence 8754 233333 34688888887889999999987653 32322 222233 34666677656655568889999
Q ss_pred eCCCC------eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 262 SHEDG------VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 262 D~~TG------~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
|..++ +.+..+.- -....+.++++++++ +++||-....++--+
T Consensus 688 d~~~~~~~~~~~~l~~~~g-------------h~~~i~~v~~s~~~~-~lasgs~D~~v~iw~ 736 (793)
T PLN00181 688 DLSMSISGINETPLHSFMG-------------HTNVKNFVGLSVSDG-YIATGSETNEVFVYH 736 (793)
T ss_pred eCCCCccccCCcceEEEcC-------------CCCCeeEEEEcCCCC-EEEEEeCCCEEEEEE
Confidence 98754 22222210 123557799999876 566666666655544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0026 Score=64.47 Aligned_cols=182 Identities=12% Similarity=0.071 Sum_probs=106.4
Q ss_pred EEEEEcCC--CCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEEE--EEecCC
Q 019103 117 TLFESTGL--YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKLE--EFTHQM 190 (346)
Q Consensus 117 ~LyeStGl--yg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i~--ti~~~~ 190 (346)
..|+.... ...+.|.++|.+.+.......-+.....-..+++|++|..+.+. ...++++|.++++... .++..
T Consensus 166 iayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~- 244 (429)
T PRK03629 166 IAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH- 244 (429)
T ss_pred EEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC-
Confidence 45766521 12568999999876543333322223334466678877665554 3579999998875433 33221
Q ss_pred CceeEEeeCCCEEEEE-C--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EE-EEEec-CCCeEEEEeC
Q 019103 191 KDGWGLATDGKVLFGS-D--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EV-WANVW-QTDCIARISH 263 (346)
Q Consensus 191 peGwGLt~Dg~~LyvS-d--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~L-yaNv~-~sn~I~vID~ 263 (346)
.....++|||++|+.+ + |...|+++|.++.+... +.-+. . ...+..+. || +| |+... ....|.++|+
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~-~----~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGR-S----NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCC-C----CcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 2335689999988764 3 45689999999877542 22111 1 11233343 44 45 55443 2458999999
Q ss_pred CCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC--CcEEEEEE
Q 019103 264 EDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW--PKLYEINL 319 (346)
Q Consensus 264 ~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W--p~l~ev~l 319 (346)
++|++. .+.... ......+|+|+|+.++.++... ..||.+.+
T Consensus 319 ~~g~~~-~lt~~~-------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 319 NGGAPQ-RITWEG-------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CCCCeE-EeecCC-------------CCccCEEECCCCCEEEEEEccCCCceEEEEEC
Confidence 998763 332100 0123478999999987765433 34665554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0032 Score=63.57 Aligned_cols=172 Identities=7% Similarity=0.052 Sum_probs=101.1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEEEEEe-cC-CCceeEEeeCCCE
Q 019103 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKLEEFT-HQ-MKDGWGLATDGKV 202 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i~ti~-~~-~peGwGLt~Dg~~ 202 (346)
...|.++|.+.+....-..-......-..+++|++|+.+... ...++++|..+++.. .+. .+ ......++|||++
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 568999998766543332223333334456678877666543 468999999887653 232 22 2244568999998
Q ss_pred EEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEE-EEec-CCCeEEEEeCCCCeEEEEEECC
Q 019103 203 LFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVW-QTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 203 Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Ly-aNv~-~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
|++ ++ |...|+++|.++.+.. ++.-. .+. ..+..+. || +|+ +... ....|.++|.+++++. .+...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~-~~~----~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~ 332 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDS-PAI----DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG 332 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCC-CCc----cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC
Confidence 754 43 5678999999987753 23221 111 1123333 44 444 4432 2457999999888764 33221
Q ss_pred chhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019103 276 NLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 276 ~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
. ...+..+|+|+++.++++....+ .|+.+.+
T Consensus 333 ~-------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 333 G-------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred C-------------CcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 0 01244789999999987654332 4554444
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0028 Score=64.42 Aligned_cols=190 Identities=16% Similarity=0.150 Sum_probs=110.7
Q ss_pred EEecCCE----EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe--eCCEEEE--EECCCC--
Q 019103 111 LYAENDT----LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW--LQKTGFI--YDQNNL-- 180 (346)
Q Consensus 111 ~~~~d~~----LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw--~~~~v~V--~D~~tl-- 180 (346)
.++|||+ +|+|. ..|...|.+.|+++|+......++...+.-..+++|++|..+.. ....+++ +|..+.
T Consensus 191 ~wSPDG~~~~~~y~S~-~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSY-KLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEc-cCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 5788872 35664 34778999999999987666667766666667788888766543 3335666 455442
Q ss_pred cEEEEEec---CCCceeEEeeCCCEE-EEEC--CCCeEEEEeCCC-CcEEEEEEeccCCeeeeeceeeEee-CC-EEE-E
Q 019103 181 NKLEEFTH---QMKDGWGLATDGKVL-FGSD--GSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-A 250 (346)
Q Consensus 181 ~~i~ti~~---~~peGwGLt~Dg~~L-yvSd--Gs~~l~vIDp~T-~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Ly-a 250 (346)
.....+.. +......++|||++| |++| |..+|+++|... ......+.-.. .... ...+. || +|+ +
T Consensus 270 g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~--~~~~---~p~wSPDG~~Laf~ 344 (428)
T PRK01029 270 GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY--RNSS---CPAWSPDGKKIAFC 344 (428)
T ss_pred CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC--CCcc---ceeECCCCCEEEEE
Confidence 12222221 111234689999965 6676 456899988642 22222332211 1111 12222 44 444 4
Q ss_pred Eec-CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC--CCCcEEEEEEe
Q 019103 251 NVW-QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK--LWPKLYEINLR 320 (346)
Q Consensus 251 Nv~-~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK--~Wp~l~ev~l~ 320 (346)
... ....|.++|+++|++.....- . ......+|+|+++.|+.+.. ....||.+.+.
T Consensus 345 ~~~~g~~~I~v~dl~~g~~~~Lt~~-~-------------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRDYQLTTS-P-------------ENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred EcCCCCcEEEEEECCCCCeEEccCC-C-------------CCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 332 234799999999987422110 0 01245789999998876543 34578888764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0097 Score=61.96 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=123.5
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
..+.|+|++ .++.+++ .+..|++||+.+++.+..+.- ...........+++ +.++.-.++.+.++|+.+.+.+.+
T Consensus 129 ~~l~f~P~~~~iLaSgs--~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 129 GIVSFHPSAMNVLASAG--ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred EEEEeCcCCCCEEEEEe--CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEE
Confidence 678999875 5777777 456999999999988777653 33343433334444 455556789999999999999888
Q ss_pred EecC-CC--ceeEEeeCCCEEEEE--C--CCCeEEEEeCCCCcE-EEEEEeccCCeeeeeceeeEee-CC-EEEEEecCC
Q 019103 186 FTHQ-MK--DGWGLATDGKVLFGS--D--GSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQT 255 (346)
Q Consensus 186 i~~~-~p--eGwGLt~Dg~~LyvS--d--Gs~~l~vIDp~T~kv-i~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~s 255 (346)
+... .. ......++++.++.+ + .+.+|.++|..+++. ...+...... .+ .-.-|. ++ .||+.-..+
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~-~~---~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS-AL---FIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC-ce---EEEEEcCCCCEEEEEEeCC
Confidence 8642 11 122345667776653 2 257899999987653 3333332211 11 111122 33 567665557
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC---------EEEEecCCCCcEEEEEE-eeccc
Q 019103 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN---------RIFVTGKLWPKLYEINL-REMKR 324 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~---------~LfVTGK~Wp~l~ev~l-~~~~~ 324 (346)
+.|.+.|..+++++...... ..+.-.|+++.|+.. |+|--.. ..|.-|.+ +|++.
T Consensus 282 g~Iriwdl~~~~~~~~~~~~------------s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~~--~~i~pis~~vpRk~ 346 (493)
T PTZ00421 282 GNIRCFELMNERLTFCSSYS------------SVEPHKGLCMMPKWSLDTRKCEIARFYALTY--HSLYTIQMLLPRKQ 346 (493)
T ss_pred CeEEEEEeeCCceEEEeecc------------CCCCCcceEecccccccccceeeeEEEEecC--CeEEEEEEEeccCC
Confidence 88999999999987765431 112346788888654 7775432 35777777 47663
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0018 Score=67.04 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=108.7
Q ss_pred EEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC--eeEEEEEEeCCEEEEEEeeCCEEEEE
Q 019103 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS--YFGEGLTLLGEKLFQVTWLQKTGFIY 175 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~--~FgeGit~~g~~LY~ltw~~~~v~V~ 175 (346)
.-+|...-| +|..+||++=+.+.+ ++-++.+||..+++++.++.++.. .==.|+-..+++|..+. .++.+-.+
T Consensus 231 ~~aHkGsIf--alsWsPDs~~~~T~S--aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVS-l~G~in~l 305 (603)
T KOG0318|consen 231 SDAHKGSIF--ALSWSPDSTQFLTVS--ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVS-LSGTINYL 305 (603)
T ss_pred CCCccccEE--EEEECCCCceEEEec--CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEE-cCcEEEEe
Confidence 335766776 899999996555555 567999999999999999988754 11234555566655444 46899999
Q ss_pred ECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEEEEe
Q 019103 176 DQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANV 252 (346)
Q Consensus 176 D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~LyaNv 252 (346)
++.+.+++..+.-- .-.-.++++|+++||..+-+..|.-+|-.++.--+-..- .+.. +++-|...+ +.||---
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~-~h~n---qI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK-GHTN---QIKGMAASESGELFTIG 381 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc-cccc---eEEEEeecCCCcEEEEe
Confidence 99999988888632 224556889999999998889999999877654221100 0111 222344444 5666555
Q ss_pred cCCCeEEEEeCCCCe
Q 019103 253 WQTDCIARISHEDGV 267 (346)
Q Consensus 253 ~~sn~I~vID~~TG~ 267 (346)
| +|++-+|+...+-
T Consensus 382 ~-Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 382 W-DDTLRVISLKDNG 395 (603)
T ss_pred c-CCeEEEEecccCc
Confidence 4 7888888665443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0037 Score=67.13 Aligned_cols=199 Identities=13% Similarity=0.087 Sum_probs=136.7
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-eeEEEEEEe--CCEEEEEEeeCCEEEEEECCCC
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl 180 (346)
.+-..|+.|+.+|+..+|+.+.| +|+.||+...+--++...|.. .|.. ++.+ |+.+...+-..=.++|.+.+|+
T Consensus 392 ts~Vt~v~f~~~g~~llssSLDG--tVRAwDlkRYrNfRTft~P~p~Qfsc-vavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNVLLSSSLDG--TVRAWDLKRYRNFRTFTSPEPIQFSC-VAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred CCceEEEEEEecCCEEEEeecCC--eEEeeeecccceeeeecCCCceeeeE-EEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 44447999999899888988877 999999999988888877643 4443 6665 6777777777778999999999
Q ss_pred cEEEEEec-CCC-ceeEEeeCCCEEEEECCCCeEEEEeC-CCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCe
Q 019103 181 NKLEEFTH-QMK-DGWGLATDGKVLFGSDGSSMLYQIDP-QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDC 257 (346)
Q Consensus 181 ~~i~ti~~-~~p-eGwGLt~Dg~~LyvSdGs~~l~vIDp-~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~ 257 (346)
+++..+.- +.| .|..++++|..|+-.-=+.+|..+|- ..-..+.++++..+--.+. +-+++.+|-|+- .+..
T Consensus 469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vs----frPdG~elaVaT-ldgq 543 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVS----FRPDGKELAVAT-LDGQ 543 (893)
T ss_pred eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEE----EcCCCCeEEEEE-ecce
Confidence 99998873 333 55668899998777656889999984 2233455677754311111 223355777665 3778
Q ss_pred EEEEeCCCCeEEEEEEC----Cchhhhhhh---ccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 258 IARISHEDGVVLGWVLL----PNLRERLVA---AGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l----~~l~~~~~~---~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
|...|++.+..++.|+- ..-+..... .....+...--|.|++||+-+.-.|+.
T Consensus 544 Itf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s 603 (893)
T KOG0291|consen 544 ITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGES 603 (893)
T ss_pred EEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCc
Confidence 99999999999977743 111111000 001234577789999999876655543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0028 Score=69.29 Aligned_cols=197 Identities=16% Similarity=0.107 Sum_probs=124.0
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEecc----------CC---Cee--EEEEEEeCCEEEEEEe---------eCCE
Q 019103 116 DTLFESTGLYGRSSVRRVALETGKVEAINQM----------EG---SYF--GEGLTLLGEKLFQVTW---------LQKT 171 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l----------~~---~~F--geGit~~g~~LY~ltw---------~~~~ 171 (346)
+++|+.+. +.+|..+|.+|||+.-.... +. ..+ ...-.+.++.+|+..+ -++.
T Consensus 261 ~rV~~~T~---Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 261 RRIILPTS---DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred CEEEEecC---CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 38888875 45999999999998854322 11 111 1112446788998754 1578
Q ss_pred EEEEECCCCcEEEEEecC-----------------CCceeE-Eee--CCCEEEEE-----------------C-CCCeEE
Q 019103 172 GFIYDQNNLNKLEEFTHQ-----------------MKDGWG-LAT--DGKVLFGS-----------------D-GSSMLY 213 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-----------------~peGwG-Lt~--Dg~~LyvS-----------------d-Gs~~l~ 213 (346)
+..||.+|++++-++..+ .+..|+ .+. +.+.+|+- | -++.|.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slv 417 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLV 417 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEE
Confidence 999999999999998642 123343 233 34556651 1 157899
Q ss_pred EEeCCCCcEEEEEEe-ccC-------CeeeeeceeeEeeCC----EEEEEecCCCeEEEEeCCCCeEEEEEECCc-----
Q 019103 214 QIDPQTLKVIRKDIV-RYK-------GREVRNLNELEFIKG----EVWANVWQTDCIARISHEDGVVLGWVLLPN----- 276 (346)
Q Consensus 214 vIDp~T~kvi~~I~V-~~~-------G~pv~~lNELE~~~G----~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~----- 276 (346)
-+|++|+|++=..+. ..+ ..| .|-+++..+| -||+.. .+..+.++|.+||+.+-.+..-.
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p--~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~l~~~~e~~vp~~~ 494 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQP--SLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEPIVPVEEVPVPQGA 494 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCc--eEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCEEeeceeecCCccC
Confidence 999999999754444 211 122 2333443366 355444 46789999999999886542210
Q ss_pred hh-----------------hhhh---------------------------------h-----ccCCCCceeeEEEEeCCC
Q 019103 277 LR-----------------ERLV---------------------------------A-----AGYNGIDVLNGIAWDSNR 301 (346)
Q Consensus 277 l~-----------------~~~~---------------------------------~-----~~~~~~~vlNGIA~d~~~ 301 (346)
+. +.+. + .+...+.-..|+||||++
T Consensus 495 ~~ge~~sptQp~~~~~~~~~~~~~~d~~g~t~~dq~~cr~~~~~~~~~g~~tPps~~~~~~~Pg~~Gg~nW~~~a~dP~~ 574 (764)
T TIGR03074 495 VPGERYSPTQPFSVLTFGPPTLTESDMWGATPFDQLACRIQFKSLRYEGLYTPPSEQGSLVFPGNLGGFNWGGVAVDPTR 574 (764)
T ss_pred CCCccccccccccccccCCcccchhhccCCChhHhhhhhhhhcccccCCCcCCCCCCceEEecCCcccCCCCCceECCCC
Confidence 00 0000 0 011235567899999999
Q ss_pred CEEEEecCCCCcEEEEE
Q 019103 302 NRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 302 ~~LfVTGK~Wp~l~ev~ 318 (346)
+.+||.-.+++..++..
T Consensus 575 g~~yv~~~~~~~~~~~~ 591 (764)
T TIGR03074 575 QVMFVNPMRLPFVSQLV 591 (764)
T ss_pred CEEEEEChhcceeeEee
Confidence 99999999999777653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0018 Score=63.95 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=111.5
Q ss_pred EecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC--CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC
Q 019103 112 YAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (346)
Q Consensus 112 ~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~--~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~ 189 (346)
...|+++|+.+. .| .|..+|+++|+++=+..+.. ..+..++...+++||+.+|.. .++.+|..+++++-+++.+
T Consensus 65 ~~~dg~v~~~~~-~G--~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g-~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 65 ADGDGTVYVGTR-DG--NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG-KLYALDASTGTLVWSRNVG 140 (370)
T ss_pred EeeCCeEEEecC-CC--cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc-eEEEEECCCCcEEEEEecC
Confidence 566899999743 13 99999999999876665553 556667777788999999987 9999999999999999976
Q ss_pred CCceeE--EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC-CCeEEEEeCCCC
Q 019103 190 MKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-TDCIARISHEDG 266 (346)
Q Consensus 190 ~peGwG--Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~-sn~I~vID~~TG 266 (346)
...=|. ......++|+.+.++.++-+|++|++.+=+..+... .+..........+|.+|+.... +..+..+|+++|
T Consensus 141 ~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 141 GSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDG 219 (370)
T ss_pred CCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCCCcceEEEEEccCC
Confidence 300011 122456777766788999999999998766555331 1111111222567889986532 558999999999
Q ss_pred eEEEEE
Q 019103 267 VVLGWV 272 (346)
Q Consensus 267 ~Vv~~I 272 (346)
...-..
T Consensus 220 ~~~w~~ 225 (370)
T COG1520 220 TLKWSQ 225 (370)
T ss_pred cEeeee
Confidence 988764
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00096 Score=65.11 Aligned_cols=198 Identities=18% Similarity=0.210 Sum_probs=127.7
Q ss_pred EEEEEEecCCCCcceeEEEecCC--EEEEEcCCCCCCeEEEEECCCCcEEEEec--cCCCeeEEEEEE-eCCEEEEEEe-
Q 019103 94 QVVNEFPHDPRAFTQGLLYAEND--TLFESTGLYGRSSVRRVALETGKVEAINQ--MEGSYFGEGLTL-LGEKLFQVTW- 167 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~--~LyeStGlyg~s~V~~iDl~Tgkv~~~~~--l~~~~FgeGit~-~g~~LY~ltw- 167 (346)
+++.......+. .|++++|.- .+...- +-| ..-.+||+.+++....+. -+..+||+|+-- +|..||..-.
T Consensus 59 k~v~~~~lpaR~--Hgi~~~p~~~ravafAR-rPG-tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 59 KIVFATALPARG--HGIAFHPALPRAVAFAR-RPG-TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred ceeeeeeccccc--CCeecCCCCcceEEEEe-cCC-ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 455555554455 799998754 244442 113 477889999998766664 356789999866 5566776521
Q ss_pred ---eCCEEEEEECC-CCcEEEEEec-C-CCceeEEeeCCCEEEEECC---CC---------------eEEEEeCCCCcEE
Q 019103 168 ---LQKTGFIYDQN-NLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDG---SS---------------MLYQIDPQTLKVI 223 (346)
Q Consensus 168 ---~~~~v~V~D~~-tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdG---s~---------------~l~vIDp~T~kvi 223 (346)
..+.+=|||.. -++.+++|+. + .|.-+-+.+||+.|.++|| +. ++..+|..|++++
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence 23567789964 6788888885 3 4666678999999999997 33 5678888888775
Q ss_pred EEEEec--------------cC-------------------------CeeeeeceeeE--------ee--------CCEE
Q 019103 224 RKDIVR--------------YK-------------------------GREVRNLNELE--------FI--------KGEV 248 (346)
Q Consensus 224 ~~I~V~--------------~~-------------------------G~pv~~lNELE--------~~--------~G~L 248 (346)
.+.... .+ |+|+..+---| |+ +|-+
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 544433 11 22222111000 11 3455
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019103 249 WANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 249 yaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
-++.-..|+..++|.+||+|+..-.+.++.+.. ..-+|++.+.-+.+
T Consensus 295 ~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva--------~~~~gf~vssg~G~ 341 (366)
T COG3490 295 ALTSPRGNRAVIWDAATGAVVSEAALPDAAGVA--------AAKGGFAVSSGQGR 341 (366)
T ss_pred EEecCCCCeEEEEEcCCCcEEecccccccccce--------eccCceEEecCCce
Confidence 567777899999999999999998776655431 13366666654443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0067 Score=59.36 Aligned_cols=201 Identities=15% Similarity=0.166 Sum_probs=132.3
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC----------------------------------
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG---------------------------------- 148 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~---------------------------------- 148 (346)
....+.-|.|+.+|.+.+++. .+++++.||..+|+..+.+...+
T Consensus 13 ~~~~i~sl~fs~~G~~litss--~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSS--EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred CCCceeEEEecCCCCEEEEec--CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 345567899999886555544 56799999999999888775431
Q ss_pred ---Cee-EE-----EEEEe-CCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCC
Q 019103 149 ---SYF-GE-----GLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQ 218 (346)
Q Consensus 149 ---~~F-ge-----Git~~-g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~ 218 (346)
+|| |+ .|... .+..|+..-.++.+...|.++-+-.+-+....+--.+++|.|-.+-++++++.|...|.+
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence 112 11 11111 134566666677777777776666666666433444566777777778888899999988
Q ss_pred CCcE--EEEEEeccCCeeeeeceeeEee-CCE-EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeE
Q 019103 219 TLKV--IRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNG 294 (346)
Q Consensus 219 T~kv--i~~I~V~~~G~pv~~lNELE~~-~G~-LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNG 294 (346)
.+.. -.++.++++ +...-|+||+- ||+ |.+.- ..+.+.+||.-+|.+..+... .+ .....+-+
T Consensus 171 s~dkgPF~tf~i~~~--~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~~~tfs~---~~-------~~~~~~~~ 237 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDN--DEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTVKSTFSG---YP-------NAGNLPLS 237 (311)
T ss_pred ccCCCCceeEccCCC--CccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcEeeeEee---cc-------CCCCccee
Confidence 7632 355666543 22345778887 464 66554 467799999999999999854 21 22345667
Q ss_pred EEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 295 IAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 295 IA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
..|+||++. +++|-..++|.-=.+
T Consensus 238 a~ftPds~F-vl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 238 ATFTPDSKF-VLSGSDDGTIHVWNL 261 (311)
T ss_pred EEECCCCcE-EEEecCCCcEEEEEc
Confidence 889999874 455666677665444
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0018 Score=68.44 Aligned_cols=197 Identities=18% Similarity=0.196 Sum_probs=135.5
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCC-C---CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLY-G---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGly-g---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw 167 (346)
.+.-+...|..... .|+++. +|.||+..|.. | -+.+-+||+.+++=....++...-.+.|++..++.||++-.
T Consensus 312 ~w~~~a~m~~~r~~--~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG 388 (571)
T KOG4441|consen 312 EWSSLAPMPSPRCR--VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGG 388 (571)
T ss_pred cEeecCCCCccccc--ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEec
Confidence 45556666664444 588887 47999998865 2 37889999999997776677776678889999999999855
Q ss_pred eC-----CEEEEEECCCC--cEEEEEecCCCceeEEeeCCCEEEEECC----C---CeEEEEeCCCCcEEEEEEecc--C
Q 019103 168 LQ-----KTGFIYDQNNL--NKLEEFTHQMKDGWGLATDGKVLFGSDG----S---SMLYQIDPQTLKVIRKDIVRY--K 231 (346)
Q Consensus 168 ~~-----~~v~V~D~~tl--~~i~ti~~~~peGwGLt~Dg~~LyvSdG----s---~~l~vIDp~T~kvi~~I~V~~--~ 231 (346)
.+ +.+-.||+.+- +.++..+.. ..|.|++.=+++||+.=| + +++...||.|.+-...-+... .
T Consensus 389 ~dg~~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~ 467 (571)
T KOG4441|consen 389 FDGEKSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS 467 (571)
T ss_pred cccccccccEEEecCCCCcccccCCCCcc-eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc
Confidence 44 45888998754 444444443 688899998999999654 3 579999999988765444433 1
Q ss_pred CeeeeeceeeEeeCCEEEEEecC-----CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019103 232 GREVRNLNELEFIKGEVWANVWQ-----TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 232 G~pv~~lNELE~~~G~LyaNv~~-----sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
+.. +...+|+|||-=.. .++|-+.||++.+....-++ ... ..--|++. .++++||
T Consensus 468 ~~g------~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m---~~~---------rs~~g~~~--~~~~ly~ 527 (571)
T KOG4441|consen 468 GFG------VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM---TSP---------RSAVGVVV--LGGKLYA 527 (571)
T ss_pred cce------EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccC---ccc---------cccccEEE--ECCEEEE
Confidence 222 55668899974332 34588899999986555323 211 11234444 3679999
Q ss_pred ecCCCC
Q 019103 307 TGKLWP 312 (346)
Q Consensus 307 TGK~Wp 312 (346)
.|+...
T Consensus 528 vGG~~~ 533 (571)
T KOG4441|consen 528 VGGFDG 533 (571)
T ss_pred EecccC
Confidence 999443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0012 Score=64.98 Aligned_cols=141 Identities=12% Similarity=0.142 Sum_probs=100.1
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
-.|- +.|..++||++++++. -+..|..||+..|..+.++.++....+.-..+.+....+++-.+..-.+++-.+ .
T Consensus 65 ~~pi-~sl~WS~dgr~LltsS--~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~ 139 (405)
T KOG1273|consen 65 VRPI-TSLCWSRDGRKLLTSS--RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--P 139 (405)
T ss_pred ccce-eEEEecCCCCEeeeec--CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--C
Confidence 3453 7899999999888877 567999999999999999999988888777777777777776666666666554 2
Q ss_pred EEE-EecC-------CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEe
Q 019103 183 LEE-FTHQ-------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (346)
Q Consensus 183 i~t-i~~~-------~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv 252 (346)
+++ ++.. .+..-.++.-|+++|+-++-+.+.|+|++|++.++...+.. +.++-.+++. +|+-++-|
T Consensus 140 ~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits----~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 140 KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS----VQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech----heeeeEEEEeccCcEEEEe
Confidence 222 2321 11111245568999999999999999999999998887754 2233345544 56544433
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0057 Score=61.86 Aligned_cols=182 Identities=14% Similarity=0.146 Sum_probs=102.9
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEEecC-CCce
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEFTHQ-MKDG 193 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti~~~-~peG 193 (346)
..|++.. .+.+.|..+|.+.........-+.....--.+++|++|+.+...+ ..++++|.++++...-...+ ....
T Consensus 166 iayv~~~-~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~ 244 (427)
T PRK02889 166 IAYVIKT-GNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSA 244 (427)
T ss_pred EEEEEcc-CCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccc
Confidence 4677643 246789999986543322222222222334566788877665433 46999999888654322222 2234
Q ss_pred eEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEE-EEec-CCCeEEEEeCCCC
Q 019103 194 WGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVW-QTDCIARISHEDG 266 (346)
Q Consensus 194 wGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Ly-aNv~-~sn~I~vID~~TG 266 (346)
...+|||++|++ ++ |...|+.+|..+.+. .++.-. .+.. .+..+. || +|+ +... ....|.++|..++
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~-~~~~----~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQS-SGID----TEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCc-EECCCC-CCCC----cCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 568999998865 43 567899999877653 233211 1111 123333 45 454 4432 3557999998888
Q ss_pred eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019103 267 VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 267 ~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
++. .+...+ ......+|+|+|+.++.+....+ .||.+++
T Consensus 319 ~~~-~lt~~g-------------~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 319 AAQ-RVTFTG-------------SYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred ceE-EEecCC-------------CCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 753 232211 00123689999998876554322 4555554
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=7.9e-05 Score=50.50 Aligned_cols=34 Identities=35% Similarity=0.344 Sum_probs=31.3
Q ss_pred eCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccC
Q 019103 198 TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 198 ~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
+|+++||++| ++++|.+||++++++++++.|+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~ 35 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY 35 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC
Confidence 5899999999 699999999999999999999763
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00089 Score=63.84 Aligned_cols=84 Identities=18% Similarity=0.322 Sum_probs=59.4
Q ss_pred CCCceeEEeeCCCEEEEECC-CCeE--EEEeCCCCcEEEEEEecc--CCeeeeeceeeEee------CCEEEEEecCCCe
Q 019103 189 QMKDGWGLATDGKVLFGSDG-SSML--YQIDPQTLKVIRKDIVRY--KGREVRNLNELEFI------KGEVWANVWQTDC 257 (346)
Q Consensus 189 ~~peGwGLt~Dg~~LyvSdG-s~~l--~vIDp~T~kvi~~I~V~~--~G~pv~~lNELE~~------~G~LyaNv~~sn~ 257 (346)
+.+.|..-+.|.|..|..|. +-+| +-.|-.|+.+..+-.+-+ ..+|+. +++++ +|.|||++|...+
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e---~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFE---SLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcC---CCCCCcceEccCCcEEEEEecCcE
Confidence 34566666678899999996 4477 444588877764433322 112332 23332 5789999999999
Q ss_pred EEEEeCCCCeEEEEEECC
Q 019103 258 IARISHEDGVVLGWVLLP 275 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~ 275 (346)
|.++||.||+++.+|.++
T Consensus 235 V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 235 VQKVDPTTGKILLEIKLP 252 (310)
T ss_pred EEEECCCCCcEEEEEEcC
Confidence 999999999999999874
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0015 Score=66.81 Aligned_cols=118 Identities=15% Similarity=0.201 Sum_probs=91.7
Q ss_pred eeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCC------CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG------SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~------~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
|-..|.++|+ ...++|+. -..+.||+.+.|+..--++.. +.|. ++.+++ ..+....++-+.++-+.|.
T Consensus 261 ~~a~f~p~G~~~i~~s~rr--ky~ysyDle~ak~~k~~~~~g~e~~~~e~Fe--VShd~~-fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGRR--KYLYSYDLETAKVTKLKPPYGVEEKSMERFE--VSHDSN-FIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred ceeeecCCCceEEEecccc--eEEEEeeccccccccccCCCCcccchhheeE--ecCCCC-eEEEcccCceEEeehhhhh
Confidence 6677888886 66666743 489999999999877665532 2343 455555 4445677899999999999
Q ss_pred cEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc
Q 019103 181 NKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 181 ~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
+.+.++..+ .-.+..++.||+.||++.|+++|+++|..+..++++.....
T Consensus 336 eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G 386 (514)
T KOG2055|consen 336 ELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG 386 (514)
T ss_pred hhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC
Confidence 999999975 23556688999999999999999999999999998887743
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0012 Score=63.39 Aligned_cols=203 Identities=12% Similarity=0.164 Sum_probs=132.2
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEE--EEEeCCEEEEEEeeCCEE
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG--LTLLGEKLFQVTWLQKTG 172 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeG--it~~g~~LY~ltw~~~~v 172 (346)
.+.++.| +--....+|+.|..-+++.| .+.-+++||+..-+--. ..+.+.+-|.= +=...++-+...-.++.|
T Consensus 93 elhsf~h--khivk~~af~~ds~~lltgg--~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 93 ELHSFEH--KHIVKAVAFSQDSNYLLTGG--QEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhh--hheeeeEEecccchhhhccc--hHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 4455555 33346778887665445545 34467888887654210 01222221111 111345545555778999
Q ss_pred EEEECCCCcEEEEEecCC-CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEE
Q 019103 173 FIYDQNNLNKLEEFTHQM-KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~-peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaN 251 (346)
-..|..|++.+.++...+ ..-..+++||+.|-+++|+ .|.|+|+.+|.+++..++..+=... -|++.. .+||.
T Consensus 168 RLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gs-sV~Fwdaksf~~lKs~k~P~nV~SA----SL~P~k-~~fVa 241 (334)
T KOG0278|consen 168 RLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGS-SVKFWDAKSFGLLKSYKMPCNVESA----SLHPKK-EFFVA 241 (334)
T ss_pred EEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCc-eeEEeccccccceeeccCccccccc----cccCCC-ceEEe
Confidence 999999999999998753 4566799999999999986 7999999999999998886521111 144434 78877
Q ss_pred ecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019103 252 VWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
-...-.+.+.|=.||+-++.++-+-.. -...+.|+|+| .+|-.|-..++|.-=+..|
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkgh~g------------pVhcVrFSPdG-E~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKGHFG------------PVHCVRFSPDG-ELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred cCcceEEEEEeccCCceeeecccCCCC------------ceEEEEECCCC-ceeeccCCCceEEEEEecC
Confidence 666778999999999988775221111 23568899986 4677777777665444444
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0097 Score=64.08 Aligned_cols=182 Identities=13% Similarity=0.099 Sum_probs=122.3
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
-+.-++++|||++..+.+ ++++|.+||..+|--..+..-. ...=|.-++.. ++...+.-.+++|-.+|.+..+..+
T Consensus 352 ~i~~l~YSpDgq~iaTG~--eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~-g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGA--EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTAR-GNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred ceeeEEECCCCcEEEecc--CCCcEEEEeccCceEEEEeccCCCceEEEEEEec-CCEEEEeecCCeEEeeeecccceee
Confidence 346899999999998887 6779999999998654444322 22212222233 4455566778999999999999999
Q ss_pred EEecCCCc---eeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEE
Q 019103 185 EFTHQMKD---GWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIAR 260 (346)
Q Consensus 185 ti~~~~pe---GwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~v 260 (346)
||..+.|- -.++.|.|+.+.+..- +=.|++++.+|++++..+.=.+ -|+..| .+.+.+.-|+-..| +++|-+
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE--gPVs~l-~f~~~~~~LaS~SW-DkTVRi 504 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE--GPVSGL-SFSPDGSLLASGSW-DKTVRI 504 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC--Ccceee-EEccccCeEEeccc-cceEEE
Confidence 99764221 2223444888888664 5589999999999987666544 365532 12333456666777 677766
Q ss_pred EeCCCC-eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 261 ISHEDG-VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 261 ID~~TG-~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
=|.-.. ..++++.+ . -+++ ++++.|+|+++-|+-
T Consensus 505 W~if~s~~~vEtl~i---~----------sdvl-~vsfrPdG~elaVaT 539 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEI---R----------SDVL-AVSFRPDGKELAVAT 539 (893)
T ss_pred EEeeccCceeeeEee---c----------ccee-EEEEcCCCCeEEEEE
Confidence 665433 23466644 1 1355 499999999999873
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.012 Score=56.63 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=100.3
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcE--EEEeccC-CCeeEEEEEEeCCEEEEEEeeCC
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV--EAINQME-GSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv--~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
.-.++|+|...- ..-|++.||++.+..+| ...|+.||+.+++- +..+... ++.-..|+-.+|+-.|... .++
T Consensus 31 ~C~rTiqh~dsq-VNrLeiTpdk~~LAaa~---~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs-eDg 105 (311)
T KOG0315|consen 31 ICSRTIQHPDSQ-VNRLEITPDKKDLAAAG---NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS-EDG 105 (311)
T ss_pred eEEEEEecCccc-eeeEEEcCCcchhhhcc---CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC-CCc
Confidence 456788884333 37899999888776654 46999999999875 4455444 5666777877887777654 579
Q ss_pred EEEEEECCCCcEEEEEecCCC-ceeEEeeCCCEEEEECCCCeEEEEeCCCC-----------cEEEEEEeccCCe
Q 019103 171 TGFIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTL-----------KVIRKDIVRYKGR 233 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~p-eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~-----------kvi~~I~V~~~G~ 233 (346)
.+-|.|...+..-+.+.+.+| .-..+.|+...|+++|.+..|.++|..+. +-+.++.|..+|.
T Consensus 106 t~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 106 TVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred eEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc
Confidence 999999999888888876533 34457889999999999999999997664 3466777765544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00079 Score=68.84 Aligned_cols=156 Identities=18% Similarity=0.268 Sum_probs=83.5
Q ss_pred eeEEEEEEecCC--CCcceeEEEecCCEEEEEc-------------------CCCCCCeEEEEECCCCcEEEEeccCCCe
Q 019103 92 TIQVVNEFPHDP--RAFTQGLLYAENDTLFEST-------------------GLYGRSSVRRVALETGKVEAINQMEGSY 150 (346)
Q Consensus 92 t~~Vv~t~phd~--~~FTqGL~~~~d~~LyeSt-------------------Glyg~s~V~~iDl~Tgkv~~~~~l~~~~ 150 (346)
|.+|..+.+.+. ..|..-+-+.+...+.+|+ ++|| ++|++||+.++|+++.+.+++.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG-~~l~vWD~~~r~~~Q~idLg~~- 243 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYG-HSLHVWDWSTRKLLQTIDLGEE- 243 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S---EEEEEETTTTEEEEEEES-TT-
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhccccc-CeEEEEECCCCcEeeEEecCCC-
Confidence 577888887643 4454444555544444443 3577 6999999999999999999873
Q ss_pred eEEEEEEe---------CCEEEEEEeeCCEEEEEEC-C--CCcEEEEEecC--CCceeE-------------------Ee
Q 019103 151 FGEGLTLL---------GEKLFQVTWLQKTGFIYDQ-N--NLNKLEEFTHQ--MKDGWG-------------------LA 197 (346)
Q Consensus 151 FgeGit~~---------g~~LY~ltw~~~~v~V~D~-~--tl~~i~ti~~~--~peGwG-------------------Lt 197 (346)
|..+. ...-|+....+..|+.+=. + +.+..+-|.++ .-+||. ||
T Consensus 244 ---g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 244 ---GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp ---EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred ---CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 32221 2578888888888887654 2 33333333332 124552 56
Q ss_pred eCCCEEEEEC-CCCeEEEEe---CCCCcEEEEEEeccC----------Ceeee---eceeeEeeCCEEEEEe
Q 019103 198 TDGKVLFGSD-GSSMLYQID---PQTLKVIRKDIVRYK----------GREVR---NLNELEFIKGEVWANV 252 (346)
Q Consensus 198 ~Dg~~LyvSd-Gs~~l~vID---p~T~kvi~~I~V~~~----------G~pv~---~lNELE~~~G~LyaNv 252 (346)
.|.++||+|+ +.+.|.+.| |..-+++.++.+|.- |+++. ++-+|..++.+||+++
T Consensus 321 lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 6899999999 899998887 566788899988741 22221 3334555566999976
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.013 Score=56.94 Aligned_cols=186 Identities=12% Similarity=0.125 Sum_probs=127.9
Q ss_pred EEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEE
Q 019103 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFI 174 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V 174 (346)
++.+. +..-|.++++.++||....|.+. +..++.||+.+|+-.++..-. ....+..+..++ +=.+.--.++++.+
T Consensus 56 ~r~~~-GHsH~v~dv~~s~dg~~alS~sw--D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTikl 131 (315)
T KOG0279|consen 56 VRRLT-GHSHFVSDVVLSSDGNFALSASW--DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKL 131 (315)
T ss_pred eeeee-ccceEecceEEccCCceEEeccc--cceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeee
Confidence 44443 24678899999999999999884 459999999999766655332 233333333344 44455677889999
Q ss_pred EECCCCcEEEEEecCCCceeE----EeeCC-CEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCE
Q 019103 175 YDQNNLNKLEEFTHQMKDGWG----LATDG-KVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE 247 (346)
Q Consensus 175 ~D~~tl~~i~ti~~~~peGwG----Lt~Dg-~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~ 247 (346)
+|+...-.. ++.-++.-+|. ++|.. +-.++|-+ +.+|-++|.+++++.....-.. +++|.+++- ||.
T Consensus 132 wnt~g~ck~-t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~-----~~v~t~~vSpDGs 205 (315)
T KOG0279|consen 132 WNTLGVCKY-TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS-----GYVNTVTVSPDGS 205 (315)
T ss_pred eeecccEEE-EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccc-----ccEEEEEECCCCC
Confidence 997654333 33322225666 56665 55666666 7899999999999876554322 356667665 888
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+-+.-..+..+..-|.+.++-+.+++. .+..|.++|.|. |.|+.
T Consensus 206 lcasGgkdg~~~LwdL~~~k~lysl~a--------------~~~v~sl~fspn--rywL~ 249 (315)
T KOG0279|consen 206 LCASGGKDGEAMLWDLNEGKNLYSLEA--------------FDIVNSLCFSPN--RYWLC 249 (315)
T ss_pred EEecCCCCceEEEEEccCCceeEeccC--------------CCeEeeEEecCC--ceeEe
Confidence 888877788899999999998776633 346789999986 44443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.017 Score=63.27 Aligned_cols=111 Identities=16% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe---e----EEEEEE------------------eCCEEEEEEeeC
Q 019103 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY---F----GEGLTL------------------LGEKLFQVTWLQ 169 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~---F----geGit~------------------~g~~LY~ltw~~ 169 (346)
+++||+++. .+.|..+|.+|||++=+....... + ..|+++ .+++||+.+. +
T Consensus 194 gg~lYv~t~---~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~-D 269 (764)
T TIGR03074 194 GDTLYLCTP---HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS-D 269 (764)
T ss_pred CCEEEEECC---CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC-C
Confidence 689999987 359999999999988777553221 0 123333 3458999887 7
Q ss_pred CEEEEEECCCCcEEEEEecC-----------CCce-eEEee----CCCEEEEEC----C------CCeEEEEeCCCCcEE
Q 019103 170 KTGFIYDQNNLNKLEEFTHQ-----------MKDG-WGLAT----DGKVLFGSD----G------SSMLYQIDPQTLKVI 223 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~~~-----------~peG-wGLt~----Dg~~LyvSd----G------s~~l~vIDp~T~kvi 223 (346)
++++.+|++|++++-+|... .+.| +..+. .++.+|+.. + +..|+-+|.+|++++
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 89999999999999877531 0111 12221 256777742 1 567999999999998
Q ss_pred EEEEec
Q 019103 224 RKDIVR 229 (346)
Q Consensus 224 ~~I~V~ 229 (346)
=+...+
T Consensus 350 W~~~~g 355 (764)
T TIGR03074 350 WAWDPG 355 (764)
T ss_pred eEEecC
Confidence 666553
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0075 Score=60.96 Aligned_cols=166 Identities=15% Similarity=0.111 Sum_probs=99.0
Q ss_pred CCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcE--EEEEecCCCceeEEeeCCC
Q 019103 127 RSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNK--LEEFTHQMKDGWGLATDGK 201 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~--i~ti~~~~peGwGLt~Dg~ 201 (346)
.+.|.++|.+.+.. ..+. -......-..+++|++|+.+.+.+ ..++++|..+.+. +..++. ......++|||+
T Consensus 183 ~~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCCc-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCC
Confidence 47899999876653 2222 222233444667788877666543 4799999988753 333332 223457899999
Q ss_pred EEEE-E--CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEE-EEec-CCCeEEEEeCCCCeEEEEEEC
Q 019103 202 VLFG-S--DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVW-ANVW-QTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 202 ~Lyv-S--dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~Ly-aNv~-~sn~I~vID~~TG~Vv~~I~l 274 (346)
+|++ + +|.-.|+.+|+++.+.. ++.-+ .+ ...+..+. || +|+ +... ....|..+|..++.+ ..+..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~~-~~----~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~ 333 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPS-QLTSG-AG----NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVGG 333 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeE-eeccC-CC----CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEecC
Confidence 8766 3 34557999999887643 33221 11 11234443 45 455 4332 244788888877764 22211
Q ss_pred CchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 275 PNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 275 ~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.. +..+|+|+++.+++++. ..++.+.+
T Consensus 334 -------------~~---~~~~~SpDG~~ia~~~~--~~i~~~Dl 360 (429)
T PRK01742 334 -------------RG---YSAQISADGKTLVMING--DNVVKQDL 360 (429)
T ss_pred -------------CC---CCccCCCCCCEEEEEcC--CCEEEEEC
Confidence 01 23679999999988766 56776665
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.017 Score=59.43 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=122.9
Q ss_pred eeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCee-EEEEEEeCCEEEEEEeeCCEEEEEECCCC-cEEE
Q 019103 108 QGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF-GEGLTLLGEKLFQVTWLQKTGFIYDQNNL-NKLE 184 (346)
Q Consensus 108 qGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~F-geGit~~g~~LY~ltw~~~~v~V~D~~tl-~~i~ 184 (346)
.=..|.+ |++++.+++ ++..+..||+.+..|...+.-...|. ...+.+.++++.+.--++++|-++|+.+. ..+.
T Consensus 114 ~~~~f~~~d~t~l~s~s--Dd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 114 HVTKFSPQDNTMLVSGS--DDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred eEEEecccCCeEEEecC--CCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 3445564 457888877 66788888898887622222222232 23344567889999999999999999988 8889
Q ss_pred EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEE-EEEEeccCCeeeeeceeeEee-CC-EEEEEecCCCeEEEE
Q 019103 185 EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI-RKDIVRYKGREVRNLNELEFI-KG-EVWANVWQTDCIARI 261 (346)
Q Consensus 185 ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi-~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~sn~I~vI 261 (346)
+++++.|----+.-.++.+++|-|.|.+-|+|.-++... .... .+.+.+. -|.+. ++ +|+..- .+..|=+.
T Consensus 192 elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~--~H~KtVT---cL~l~s~~~rLlS~s-LD~~VKVf 265 (487)
T KOG0310|consen 192 ELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMF--NHNKTVT---CLRLASDSTRLLSGS-LDRHVKVF 265 (487)
T ss_pred EecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhh--cccceEE---EEEeecCCceEeecc-cccceEEE
Confidence 999874443345556778899999999999998755432 1100 0122222 13333 33 666544 58889999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
|+.+-+|+..+.+++ .+| -||.+|+++.+++..-+--
T Consensus 266 d~t~~Kvv~s~~~~~-------------pvL-siavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 266 DTTNYKVVHSWKYPG-------------PVL-SIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred EccceEEEEeeeccc-------------cee-eEEecCCCceEEEecccce
Confidence 999999999997733 134 3889988888877755443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0093 Score=57.91 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=125.3
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCC---EEEEEEeeCCEEEEEECCCCcEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE---KLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~---~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
.+++|++|++-.+|.. -+.+|..||...+-......-..+.+--=+...++ -+.+..-.++.|-|.|.+++++..
T Consensus 109 lsva~s~dn~qivSGS--rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 109 LSVAFSTDNRQIVSGS--RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred EEEEecCCCceeecCC--CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh
Confidence 6999999998888865 45699999988765444443332333333444443 344555667999999999999999
Q ss_pred EEecC--CCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEE
Q 019103 185 EFTHQ--MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI 261 (346)
Q Consensus 185 ti~~~--~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vI 261 (346)
++.-. .-.-..++|||... +|-| +.+++.+|.+..+-+-+..-. . .+|.|.+-..+.|...-....|-+-
T Consensus 187 ~~~gh~~~v~t~~vSpDGslc-asGgkdg~~~LwdL~~~k~lysl~a~---~---~v~sl~fspnrywL~~at~~sIkIw 259 (315)
T KOG0279|consen 187 TFIGHSGYVNTVTVSPDGSLC-ASGGKDGEAMLWDLNEGKNLYSLEAF---D---IVNSLCFSPNRYWLCAATATSIKIW 259 (315)
T ss_pred ccccccccEEEEEECCCCCEE-ecCCCCceEEEEEccCCceeEeccCC---C---eEeeEEecCCceeEeeccCCceEEE
Confidence 98742 12334578898754 3444 889999998877754333332 2 3456777777777555556779999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
|.++++++..+.+....+... ...-.---+||+++|.+||--
T Consensus 260 dl~~~~~v~~l~~d~~g~s~~----~~~~~clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 260 DLESKAVVEELKLDGIGPSSK----AGDPICLSLAWSADGQTLFAG 301 (315)
T ss_pred eccchhhhhhccccccccccc----cCCcEEEEEEEcCCCcEEEee
Confidence 999999999998733322111 111122348999999999964
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0077 Score=58.12 Aligned_cols=177 Identities=14% Similarity=0.092 Sum_probs=128.8
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
-+..+|+|.-+...+ .++.|..+|.++.++....++.- |-.-++..+ +.+|.+|...+.|-++.--.|+.+.+|.
T Consensus 111 ~i~wsp~g~~~~~~~--kdD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 111 NITWSPDGEYIAVGN--KDDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred EEEEcCCCCEEEEec--CcccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEEecCCceEEEEeccccccccccc
Confidence 456667775333334 56799999999999888877643 334455543 6799999999999999999999999997
Q ss_pred cCCCc--eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCC
Q 019103 188 HQMKD--GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 188 ~~~pe--GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~ 264 (346)
.-.-+ -..++|||+++-+--.+..++.+|++-+--++.|+=-+. |+. .|.+- ||+..|.--.+..|=+-+.+
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVR---TlSFS~dg~~lASaSEDh~IDIA~ve 261 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVR---TLSFSHDGRMLASASEDHFIDIAEVE 261 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceE---EEEeccCcceeeccCccceEEeEecc
Confidence 53112 334789999776644467899999987766666655443 443 24444 78888877667778888999
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
||.-+..|... .-.|-+||.|+...|--|+
T Consensus 262 tGd~~~eI~~~--------------~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 262 TGDRVWEIPCE--------------GPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred cCCeEEEeecc--------------CCceeEEecCCCceeeEEe
Confidence 99999999652 1358899999988776554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.016 Score=57.16 Aligned_cols=176 Identities=15% Similarity=0.175 Sum_probs=121.4
Q ss_pred CCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECC-CCcEEEEEecCC-CceeE-EeeC
Q 019103 123 GLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN-NLNKLEEFTHQM-KDGWG-LATD 199 (346)
Q Consensus 123 Glyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~-tl~~i~ti~~~~-peGwG-Lt~D 199 (346)
++|-.+.|.+||-...+.+.+..+.... .++-+..++|.++. +++++||.-. +.+++..|++.. |-|.= ++|-
T Consensus 70 pky~pNkviIWDD~k~~~i~el~f~~~I--~~V~l~r~riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIELSFNSEI--KAVKLRRDRIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred CCCCCceEEEEecccCcEEEEEEeccce--eeEEEcCCeEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence 5677899999997777777777776554 55778889988877 8999999865 888888888753 55522 3443
Q ss_pred -CCEEEEECC--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee----CCEEEEEecCCCe-EEEEeCCCCeEEEE
Q 019103 200 -GKVLFGSDG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI----KGEVWANVWQTDC-IARISHEDGVVLGW 271 (346)
Q Consensus 200 -g~~LyvSdG--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~----~G~LyaNv~~sn~-I~vID~~TG~Vv~~ 271 (346)
++.+.+-=| .++|.+.|....+.-....|.. +.+++.+. +|.+.|+.-...+ |-+.|+.+|+.+.+
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A------H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA------HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcCCceEEEc------ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 455555334 7899999987655532333322 22334443 6899998887777 55669999998877
Q ss_pred EECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC-CCcEEEEEE
Q 019103 272 VLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL-WPKLYEINL 319 (346)
Q Consensus 272 I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~-Wp~l~ev~l 319 (346)
+ +.+.. -.-++.|||+|+...|-|+-+. ==.||.++-
T Consensus 220 ~-----RRG~d------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 220 L-----RRGVD------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred e-----ecCCc------hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 5 33222 2368999999999988877433 234555554
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.014 Score=56.40 Aligned_cols=128 Identities=14% Similarity=0.163 Sum_probs=78.7
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCC---CeEEEEECCCCcE----EEEeccCCCeeEEEEEEeCCEEEEE
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGR---SSVRRVALETGKV----EAINQMEGSYFGEGLTLLGEKLFQV 165 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~---s~V~~iDl~Tgkv----~~~~~l~~~~FgeGit~~g~~LY~l 165 (346)
...+...|. ++.+- +.+.. ++.||+-.|..+. +.+..+|+.+.+- ...-+++......+.+..+++||+.
T Consensus 53 W~~~~~lp~-~r~~~-~~~~~-~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~ 129 (323)
T TIGR03548 53 WVKDGQLPY-EAAYG-ASVSV-ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVG 129 (323)
T ss_pred EEEcccCCc-cccce-EEEEE-CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEE
Confidence 444445554 33331 23333 5789988775432 5788899988874 2223455444456678889999997
Q ss_pred Eee-----CCEEEEEECCCCc--EEEEEecCCCceeEEeeCCCEEEEECC-----CCeEEEEeCCCCcEE
Q 019103 166 TWL-----QKTGFIYDQNNLN--KLEEFTHQMKDGWGLATDGKVLFGSDG-----SSMLYQIDPQTLKVI 223 (346)
Q Consensus 166 tw~-----~~~v~V~D~~tl~--~i~ti~~~~peGwGLt~Dg~~LyvSdG-----s~~l~vIDp~T~kvi 223 (346)
--. .+.+++||+++.+ .+..++.....+..++.-++.||+-=| ...++.+||++.+-.
T Consensus 130 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 130 GGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred eCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 432 4689999987654 333444322334445455678888644 135788999987754
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.01 Score=58.37 Aligned_cols=137 Identities=17% Similarity=0.284 Sum_probs=91.6
Q ss_pred CCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEE---EEecC-CCceeE---EeeCCCEEEEE----CC------
Q 019103 148 GSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLE---EFTHQ-MKDGWG---LATDGKVLFGS----DG------ 208 (346)
Q Consensus 148 ~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~---ti~~~-~peGwG---Lt~Dg~~LyvS----dG------ 208 (346)
.-|.|-.|+.. +++||.++..+++|-|||. +++.+. .|.-+ .|.|++ +-.-|.+|||+ |.
T Consensus 138 avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~-~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v 216 (336)
T TIGR03118 138 NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG-SFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEV 216 (336)
T ss_pred ceeeeeEEeecCCCceEEEeccCCCceEEecC-ccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccc
Confidence 44666444433 6899999999999999994 455432 23222 345444 56668999985 21
Q ss_pred ----CCeEEEEeCCCCcEEEEEEeccCCeeeeecee---eEe-------eCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019103 209 ----SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE---LEF-------IKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 209 ----s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE---LE~-------~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
-..|.++|+ +++.++++.-+. .||. |.. ..|.|.|-|+.+.+|.+.|+.+|+-++.+.=
T Consensus 217 ~G~G~G~VdvFd~-~G~l~~r~as~g------~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 217 AGAGLGYVNVFTL-NGQLLRRVASSG------RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred cCCCcceEEEEcC-CCcEEEEeccCC------cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 247889997 488888886654 2232 222 2578999999999999999999999888843
Q ss_pred CchhhhhhhccCCCCceeeEEEEeC
Q 019103 275 PNLRERLVAAGYNGIDVLNGIAWDS 299 (346)
Q Consensus 275 ~~l~~~~~~~~~~~~~vlNGIA~d~ 299 (346)
++-.+. ..+-|=||++-.
T Consensus 290 ~~G~pi-------~i~GLWgL~fGn 307 (336)
T TIGR03118 290 PDNHPV-------KVDGLWSLTFGN 307 (336)
T ss_pred CCCCeE-------EecCeEEeeeCC
Confidence 222221 134567777754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.027 Score=56.35 Aligned_cols=173 Identities=13% Similarity=0.129 Sum_probs=118.7
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeE---EeeCCC--E
Q 019103 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG---LATDGK--V 202 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwG---Lt~Dg~--~ 202 (346)
..+.+++++.+.++=++.++..... +-...+||.|+-.. .+||||.++.+.+.+|..-.|.+-| +++... +
T Consensus 68 r~Lkv~~~Kk~~~ICe~~fpt~IL~--VrmNr~RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y 143 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIFFPTSILA--VRMNRKRLVVCLEE--SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY 143 (391)
T ss_pred ceEEEEEcccCceEEEEecCCceEE--EEEccceEEEEEcc--cEEEEecccceeehhhhccCCCccceEeeccCCCCce
Confidence 4677777777777777777775533 33345788887644 4999999999999999763134444 555543 3
Q ss_pred EEE-EC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCe-EEEEeCCCCeEEEEEECCchh
Q 019103 203 LFG-SD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDC-IARISHEDGVVLGWVLLPNLR 278 (346)
Q Consensus 203 Lyv-Sd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~-I~vID~~TG~Vv~~I~l~~l~ 278 (346)
|-. +. .+..|+++|+.+.+.+.+|.+.+. ++. .|.+. +|.+.|+--...+ |-|++..+|+-+... +
T Consensus 144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~--~lA---alafs~~G~llATASeKGTVIRVf~v~~G~kl~eF-----R 213 (391)
T KOG2110|consen 144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKG--PLA---ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF-----R 213 (391)
T ss_pred EEecCCCCCceEEEEEcccceeeeEEEecCC--cee---EEEECCCCCEEEEeccCceEEEEEEcCCccEeeee-----e
Confidence 332 33 377999999999999999998653 322 35454 7899987766665 667888888876655 2
Q ss_pred hhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE--EEEEEee
Q 019103 279 ERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL--YEINLRE 321 (346)
Q Consensus 279 ~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l--~ev~l~~ 321 (346)
.+ .. -...+-|+|+|+++.|-+|+- -.++ |+++..+
T Consensus 214 RG-----~~-~~~IySL~Fs~ds~~L~~sS~-TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 214 RG-----TY-PVSIYSLSFSPDSQFLAASSN-TETVHIFKLEKVS 251 (391)
T ss_pred CC-----ce-eeEEEEEEECCCCCeEEEecC-CCeEEEEEecccc
Confidence 11 11 236789999999998777764 4444 4444444
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00037 Score=47.15 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=33.6
Q ss_pred eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEe
Q 019103 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLA 197 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt 197 (346)
++++||+++|.++.+.++|+++++.+++++++ .+++++.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~ 40 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVA 40 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEE
Confidence 57899999999999999999999999999997 3444543
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.019 Score=59.04 Aligned_cols=195 Identities=14% Similarity=0.129 Sum_probs=96.8
Q ss_pred cCCEEEEEc-----CCCCCCeEEEEECCCCcEEEEeccC--CCeeEEEEEEeC--CEEEEEEee----------------
Q 019103 114 ENDTLFEST-----GLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLG--EKLFQVTWL---------------- 168 (346)
Q Consensus 114 ~d~~LyeSt-----Glyg~s~V~~iDl~Tgkv~~~~~l~--~~~FgeGit~~g--~~LY~ltw~---------------- 168 (346)
++|.+|+|+ | .|...+..+|-+|-+++.+.+.+ ...||-.+-... +.+..+.|.
T Consensus 139 p~G~imIS~lGd~~G-~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 139 PDGRIMISALGDADG-NGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp SS--EEEEEEEETTS--S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred CCccEEEEeccCCCC-CCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 677788774 4 46779999999999999999774 456776555543 444444453
Q ss_pred ---CCEEEEEECCCCcEEEEEecCCCceeE-----Ee--eCCCEEEEEC-CCCeEEEEeC-CCC--cEEEEEEeccC---
Q 019103 169 ---QKTGFIYDQNNLNKLEEFTHQMKDGWG-----LA--TDGKVLFGSD-GSSMLYQIDP-QTL--KVIRKDIVRYK--- 231 (346)
Q Consensus 169 ---~~~v~V~D~~tl~~i~ti~~~~peGwG-----Lt--~Dg~~LyvSd-Gs~~l~vIDp-~T~--kvi~~I~V~~~--- 231 (346)
.+.+.|.|-.+++.+++|+.+ .+|-. +. |+..+-||.- -+++|+.+=. +.. +..+-|.|...
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg-~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLG-EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred ccccCeEEEEECCCCcEeeEEecC-CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 689999999999999999997 46532 23 3466777744 4666665532 333 34455555431
Q ss_pred Ceee-----------eecee--eEeeCCEEEEEecCCCeEEEEeC---CCCeEEEEEECCchhhhh--hh-ccCCCCcee
Q 019103 232 GREV-----------RNLNE--LEFIKGEVWANVWQTDCIARISH---EDGVVLGWVLLPNLRERL--VA-AGYNGIDVL 292 (346)
Q Consensus 232 G~pv-----------~~lNE--LE~~~G~LyaNv~~sn~I~vID~---~TG~Vv~~I~l~~l~~~~--~~-~~~~~~~vl 292 (346)
|-.+ ..+-. |..+|.+||+++|...+|-.-|. ..=+.++.+-+.+....- .. .+.+-..-|
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 1100 11112 22336789999999999988765 556788999775543110 00 011112245
Q ss_pred eEEEEeCCCCEEEEecCC
Q 019103 293 NGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 293 NGIA~d~~~~~LfVTGK~ 310 (346)
+=|-++-||+|||||+-+
T Consensus 377 qMvqlS~DGkRlYvTnSL 394 (461)
T PF05694_consen 377 QMVQLSLDGKRLYVTNSL 394 (461)
T ss_dssp --EEE-TTSSEEEEE---
T ss_pred CeEEEccCCeEEEEEeec
Confidence 668899999999999754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.022 Score=59.30 Aligned_cols=195 Identities=15% Similarity=0.170 Sum_probs=127.1
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc----CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM----EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l----~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
.-|.+-+.|+|||.+|.++| .+.+|..||=.||+.+..+.- .+..|+..-.++..++..+. -+..+-+.|..+
T Consensus 190 skFV~~VRysPDG~~Fat~g--sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S-aDkt~KIWdVs~ 266 (603)
T KOG0318|consen 190 SKFVNCVRYSPDGSRFATAG--SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS-ADKTIKIWDVST 266 (603)
T ss_pred ccceeeEEECCCCCeEEEec--CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec-CCceEEEEEeec
Confidence 55999999999999999999 667999999999998887752 34556644444444443332 357788899999
Q ss_pred CcEEEEEecCC---CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCC
Q 019103 180 LNKLEEFTHQM---KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTD 256 (346)
Q Consensus 180 l~~i~ti~~~~---peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn 256 (346)
.+++.+++.+. ..=.|.-..+++|+.-.-+..|.+++|....+.+.+.= +.+++..|- +...+.+||-..+ +.
T Consensus 267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G--HnK~ITaLt-v~~d~~~i~Sgsy-DG 342 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG--HNKSITALT-VSPDGKTIYSGSY-DG 342 (603)
T ss_pred cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc--cccceeEEE-EcCCCCEEEeecc-Cc
Confidence 99999999752 23344444577777766678999999999997665544 334554321 2222447886664 55
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.|.-=|..+|.-- .+. +..-.+..+|+|-+..++ ++|-...++|..+.+
T Consensus 343 ~I~~W~~~~g~~~------~~~------g~~h~nqI~~~~~~~~~~--~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 343 HINSWDSGSGTSD------RLA------GKGHTNQIKGMAASESGE--LFTIGWDDTLRVISL 391 (603)
T ss_pred eEEEEecCCcccc------ccc------cccccceEEEEeecCCCc--EEEEecCCeEEEEec
Confidence 5555555555420 011 112345778899886444 334345566666655
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.081 Score=51.66 Aligned_cols=155 Identities=12% Similarity=0.159 Sum_probs=93.5
Q ss_pred eEEEecCCEEEEEcCCCC-----CCeEEEEECCCCcEEEEeccC--CC--eeEEEEEEeCCEEEEEEee-----CCEEEE
Q 019103 109 GLLYAENDTLFESTGLYG-----RSSVRRVALETGKVEAINQME--GS--YFGEGLTLLGEKLFQVTWL-----QKTGFI 174 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg-----~s~V~~iDl~Tgkv~~~~~l~--~~--~FgeGit~~g~~LY~ltw~-----~~~v~V 174 (346)
+++.. ++.||+-.|... .+.+.++|+.+.+-.....++ ++ ..+..++..+++||+.--. -+.+++
T Consensus 27 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~ 105 (341)
T PLN02153 27 GIAVV-GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYS 105 (341)
T ss_pred eEEEE-CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEE
Confidence 55555 478999877532 257999999998765444432 22 2256677889999987332 257999
Q ss_pred EECCCCcE--EEEE-----ecCCCceeEEeeCCCEEEEECC------------CCeEEEEeCCCCcEEEEEEe-ccCCee
Q 019103 175 YDQNNLNK--LEEF-----THQMKDGWGLATDGKVLFGSDG------------SSMLYQIDPQTLKVIRKDIV-RYKGRE 234 (346)
Q Consensus 175 ~D~~tl~~--i~ti-----~~~~peGwGLt~Dg~~LyvSdG------------s~~l~vIDp~T~kvi~~I~V-~~~G~p 234 (346)
||+++.+- +... +.+ ..+-+++..++++|+-=| -+.|.++|+++.+-.. ++. +....+
T Consensus 106 yd~~t~~W~~~~~~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~ 183 (341)
T PLN02153 106 YDTVKNEWTFLTKLDEEGGPEA-RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEK 183 (341)
T ss_pred EECCCCEEEEeccCCCCCCCCC-ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCC
Confidence 99987543 3333 211 234455555677888533 1368899999887652 221 100011
Q ss_pred eeeceeeEeeCCEEEEEe-------------cCCCeEEEEeCCCCe
Q 019103 235 VRNLNELEFIKGEVWANV-------------WQTDCIARISHEDGV 267 (346)
Q Consensus 235 v~~lNELE~~~G~LyaNv-------------~~sn~I~vID~~TG~ 267 (346)
.... .+...+|+||+-- ...++|.+.|+++.+
T Consensus 184 r~~~-~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 184 RGGA-GFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred CCcc-eEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 1111 1345688888731 124789999999886
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0072 Score=58.16 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCC-CceeE
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-KDGWG 195 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~-peGwG 195 (346)
+-+.|+. .+..|+.||-.||+.++++.++...--.-+..+|+ |+.+-....|...|++++.+++.++.+. -+--.
T Consensus 156 ~~iLSSa--dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SAS 231 (334)
T KOG0278|consen 156 KCILSSA--DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESAS 231 (334)
T ss_pred ceEEeec--cCCceEEEEeccCcEEEEEecCCCCcceeeccCCC--EEEEecCceeEEeccccccceeeccCcccccccc
Confidence 3344444 55699999999999999998876553334555555 3444557788889999999999998751 23335
Q ss_pred EeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCe
Q 019103 196 LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGV 267 (346)
Q Consensus 196 Lt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~ 267 (346)
|.|+. ..||+-| +-.++.+|=.|++.+... +..+--|++ -+-|. ||++||.--++.+|-.=.+.-++
T Consensus 232 L~P~k-~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVh---cVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 232 LHPKK-EFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVH---CVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCC-ceEEecCcceEEEEEeccCCceeeec-ccCCCCceE---EEEECCCCceeeccCCCceEEEEEecCCC
Confidence 77777 6777665 669999999999988763 222223544 24444 78999877666655444444443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.011 Score=57.04 Aligned_cols=173 Identities=15% Similarity=0.172 Sum_probs=110.2
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEE-----EEEe--CCEEEEEEeeCCEEEEEECCCC
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG-----LTLL--GEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeG-----it~~--g~~LY~ltw~~~~v~V~D~~tl 180 (346)
+-+++.-||+=+.|.. -+.++.+++++-++...... +.|.+ +.-+ ..-+++++..+..+-+.|..+.
T Consensus 24 ~Sv~wn~~g~~lasgs--~dktv~v~n~e~~r~~~~~~----~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 24 HSVAWNCDGTKLASGS--FDKTVSVWNLERDRFRKELV----YRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred eEEEEcccCceeeecc--cCCceEEEEecchhhhhhhc----ccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 6777777776554533 34688999888774333322 22232 2222 3457888888999999999999
Q ss_pred cEEEEEecCCCceeE--EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEE-EEecCCC
Q 019103 181 NKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVW-ANVWQTD 256 (346)
Q Consensus 181 ~~i~ti~~~~peGwG--Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~Ly-aNv~~sn 256 (346)
+.+.++... .|-.- -+|||++..+.|.++.|.+||.+++++..+-+-.. ..||+.+-+ +.+| .++ .-.
T Consensus 98 k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~------e~ne~~w~~~nd~Fflt~-GlG 169 (313)
T KOG1407|consen 98 KCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF------EVNEISWNNSNDLFFLTN-GLG 169 (313)
T ss_pred cEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc------eeeeeeecCCCCEEEEec-CCc
Confidence 999999874 23333 46899999999999999999999999876555432 456765553 2333 333 234
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+|-+..-...|-+..|.. + | .--..|+|+|+|+.|-+.
T Consensus 170 ~v~ILsypsLkpv~si~A---------H--~--snCicI~f~p~GryfA~G 207 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKA---------H--P--SNCICIEFDPDGRYFATG 207 (313)
T ss_pred eEEEEecccccccccccc---------C--C--cceEEEEECCCCceEeec
Confidence 444444444443333322 1 2 233569999998876554
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0047 Score=65.02 Aligned_cols=153 Identities=11% Similarity=0.086 Sum_probs=95.2
Q ss_pred eEEEecCCEEEEEcCCCCC---CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee-----------------
Q 019103 109 GLLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL----------------- 168 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~---s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~----------------- 168 (346)
+++.. +|+||+-.|..+. +.|..||+.+++-...-+++....+.+++..+++||+.--.
T Consensus 346 ~~~~~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 346 SLAVI-DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred eEEEE-CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccc
Confidence 55555 6899999885432 46999999999766655666655667788889999997432
Q ss_pred ------CCEEEEEECCCCcE--EEEEecCCCceeEEeeCCCEEEEECC-------CCeEEEEeCCC-CcEEEEEEeccCC
Q 019103 169 ------QKTGFIYDQNNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG-------SSMLYQIDPQT-LKVIRKDIVRYKG 232 (346)
Q Consensus 169 ------~~~v~V~D~~tl~~--i~ti~~~~peGwGLt~Dg~~LyvSdG-------s~~l~vIDp~T-~kvi~~I~V~~~G 232 (346)
.+.+.+||+.+-+- +...+.+ ..+-+++.-++.||+.=| .+.+...||++ .+-.. +....
T Consensus 425 ~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~---~~~m~ 500 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL---ITTTE 500 (557)
T ss_pred cccccccceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE---ccccC
Confidence 35699999876544 4444443 234455555678888533 13578999998 56542 21111
Q ss_pred eeeeeceeeEeeCCEEEEEecCCC--eEEEEeCCCCe
Q 019103 233 REVRNLNELEFIKGEVWANVWQTD--CIARISHEDGV 267 (346)
Q Consensus 233 ~pv~~lNELE~~~G~LyaNv~~sn--~I~vID~~TG~ 267 (346)
.+.... -+...+|+|||-=...+ ++-+-||.|++
T Consensus 501 ~~r~~~-~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 501 SRLSAL-HTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cccccc-eeEEECCEEEEEeeecceeehhhcCccccc
Confidence 222221 14466899998543333 34445555543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0022 Score=65.75 Aligned_cols=209 Identities=13% Similarity=0.078 Sum_probs=135.6
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEE
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v 172 (346)
.+.+++|-+-.+| ..-+.|+++|+=|.|++ =+-.|..||++||+++.+..++.-++-.-..+++..+|.+--.++++
T Consensus 248 ~~~lrtf~gH~k~-Vrd~~~s~~g~~fLS~s--fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 248 RRCLRTFKGHRKP-VRDASFNNCGTSFLSAS--FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred cceehhhhcchhh-hhhhhccccCCeeeeee--cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcE
Confidence 4456666543344 36778888898888888 34599999999999999999998888877777888899999999999
Q ss_pred EEEECCCCcEEEEEecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE-eccCCeeeeeceeeEeeCCEEE
Q 019103 173 FIYDQNNLNKLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI-VRYKGREVRNLNELEFIKGEVW 249 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~-V~~~G~pv~~lNELE~~~G~Ly 249 (346)
.-+|..+++++.++.... -.-..+-++|++.+.|-.+..+.+++=.+.-.++.|. +...-.|.- + -..+|..+
T Consensus 325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~--~--~~P~~~~~ 400 (503)
T KOG0282|consen 325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCL--T--LHPNGKWF 400 (503)
T ss_pred EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcce--e--cCCCCCee
Confidence 999999999999987532 1222233566666665445577777755544433321 111112211 0 12367788
Q ss_pred EEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 250 ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 250 aNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
+.--..|.|++..+.. .+.+ +.++.. .|.........+.|+|||.. .++|---+++|==
T Consensus 401 ~aQs~dN~i~ifs~~~-----~~r~-nkkK~f--eGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~w 459 (503)
T KOG0282|consen 401 AAQSMDNYIAIFSTVP-----PFRL-NKKKRF--EGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFW 459 (503)
T ss_pred hhhccCceEEEEeccc-----cccc-CHhhhh--cceeccCceeeEEEcCCCCe-EEeecCCccEEEe
Confidence 8777888888775322 2222 222111 11122234578999999764 4667666666543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.032 Score=57.67 Aligned_cols=153 Identities=8% Similarity=0.043 Sum_probs=96.8
Q ss_pred eEEEecCCEEEEEcCCCCC----CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee-----CCEEEEEECCC
Q 019103 109 GLLYAENDTLFESTGLYGR----SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQNN 179 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~----s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~-----~~~v~V~D~~t 179 (346)
|.+.. ++.+|+..|..+. +.+..||+.+++-...-.++....+.+++..+++||+.--. .+.+.+||+.+
T Consensus 289 ~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 289 GSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred eEEEE-CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCC
Confidence 55554 5789988775432 36889999999876555555333355677889999998543 35688999876
Q ss_pred CcEE--EEEecCCCceeEEeeCCCEEEEECC-------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE
Q 019103 180 LNKL--EEFTHQMKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA 250 (346)
Q Consensus 180 l~~i--~ti~~~~peGwGLt~Dg~~LyvSdG-------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya 250 (346)
.+-. ...+.+ ..+-+.+.-++.+|+.-| .+.+..+||.|.+-...-+.. .+.... .....+++||+
T Consensus 368 ~~W~~~~~lp~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p---~~r~~~-~~~~~~~~iyv 442 (534)
T PHA03098 368 SKWREEPPLIFP-RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP---ISHYGG-CAIYHDGKIYV 442 (534)
T ss_pred CceeeCCCcCcC-CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC---ccccCc-eEEEECCEEEE
Confidence 5443 333433 244455556778888644 267999999987764322111 111111 13355788887
Q ss_pred EecC--------CCeEEEEeCCCCe
Q 019103 251 NVWQ--------TDCIARISHEDGV 267 (346)
Q Consensus 251 Nv~~--------sn~I~vID~~TG~ 267 (346)
--.. .+.+.+.|+++++
T Consensus 443 ~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 443 IGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ECCccCCCCCcccceEEEecCCCCc
Confidence 4321 2358899999985
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.014 Score=56.65 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=107.2
Q ss_pred EEEecCC-E-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE-eCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 110 LLYAEND-T-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 110 L~~~~d~-~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~-~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
|.+-+|- + +|.++ -+..+..+|+.+|+++=+..++.+. |+-+. .|+. .++--+++.+++++-+|++++..|
T Consensus 16 LVV~~dskT~v~igS---Hs~~~~avd~~sG~~~We~ilg~Ri--E~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGS---HSGIVIAVDPQSGNLIWEAILGVRI--ECSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred EEEecCCceEEEEec---CCceEEEecCCCCcEEeehhhCcee--eeeeEEECCE-EEEEEccCcEEEEEecchhheeee
Confidence 4555554 3 44432 2348899999999999999898876 65555 4665 666778899999999999988887
Q ss_pred ecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCC
Q 019103 187 THQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 187 ~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~ 264 (346)
... .+---.+++|++.+|....+...|.+|+.+..-+=+.+.+. |.-+.. -+...++.||++.- ...|..+.++
T Consensus 90 ~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG-~~f~sP--~i~~g~~sly~a~t-~G~vlavt~~ 165 (354)
T KOG4649|consen 90 VILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG-GTFVSP--VIAPGDGSLYAAIT-AGAVLAVTKN 165 (354)
T ss_pred eehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC-ceeccc--eecCCCceEEEEec-cceEEEEccC
Confidence 652 11222478899999998888899999999988876655543 121111 14456889999884 7788888888
Q ss_pred CCe
Q 019103 265 DGV 267 (346)
Q Consensus 265 TG~ 267 (346)
++-
T Consensus 166 ~~~ 168 (354)
T KOG4649|consen 166 PYS 168 (354)
T ss_pred CCC
Confidence 883
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.013 Score=58.65 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=104.9
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE---eC-CEEEEEEeeCCEEEEEECCCCcEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL---LG-EKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~---~g-~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
--+.|+-||+|+.+.++.| .|.+++..||+....+.-. +++|.. +. .+++.+--.++.+|++........
T Consensus 110 t~~~FshdgtlLATGdmsG--~v~v~~~stg~~~~~~~~e----~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~ 183 (399)
T KOG0296|consen 110 TCCSFSHDGTLLATGDMSG--KVLVFKVSTGGEQWKLDQE----VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC 183 (399)
T ss_pred EEEEEccCceEEEecCCCc--cEEEEEcccCceEEEeecc----cCceEEEEecccccEEEeecCCCcEEEEECCCccee
Confidence 4677888899999988766 9999999999887776421 233333 22 456667778899999998888787
Q ss_pred EEEecC-CCceeE-EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEE
Q 019103 184 EEFTHQ-MKDGWG-LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI 261 (346)
Q Consensus 184 ~ti~~~-~peGwG-Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vI 261 (346)
+.++-. .|--.| +.||||++.....+.+|.++||+|.+.+.++.-.+ |.+..- +++.. ++.+-...-....+...
T Consensus 184 kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~-~~~~~-~~~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 184 KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE-GLELPC-ISLNL-AGSTLTKGNSEGVACGV 260 (399)
T ss_pred eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc-cCcCCc-ccccc-ccceeEeccCCccEEEE
Confidence 877632 333334 89999999997778999999999999988887544 222211 11111 23333222234445556
Q ss_pred eCCCCeEEEEEE
Q 019103 262 SHEDGVVLGWVL 273 (346)
Q Consensus 262 D~~TG~Vv~~I~ 273 (346)
.-.+|||+.-.+
T Consensus 261 ~~~sgKVv~~~n 272 (399)
T KOG0296|consen 261 NNGSGKVVNCNN 272 (399)
T ss_pred ccccceEEEecC
Confidence 666777665554
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.059 Score=52.85 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=136.5
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc------EEEEeccCCCeeEEEEEEeCCEEEEEEe
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK------VEAINQMEGSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk------v~~~~~l~~~~FgeGit~~g~~LY~ltw 167 (346)
.-+..+|. +..|..--+|+|.|.+.-+.|+. +.-.+|++.+.+ +.+.+.--.. |---+...++--.+..-
T Consensus 88 nK~haipl-~s~WVMtCA~sPSg~~VAcGGLd--N~Csiy~ls~~d~~g~~~v~r~l~gHtg-ylScC~f~dD~~ilT~S 163 (343)
T KOG0286|consen 88 NKVHAIPL-PSSWVMTCAYSPSGNFVACGGLD--NKCSIYPLSTRDAEGNVRVSRELAGHTG-YLSCCRFLDDNHILTGS 163 (343)
T ss_pred cceeEEec-CceeEEEEEECCCCCeEEecCcC--ceeEEEecccccccccceeeeeecCccc-eeEEEEEcCCCceEecC
Confidence 34566777 78898899999999999998874 588889888762 2222222222 22223333333333344
Q ss_pred eCCEEEEEECCCCcEEEEEecCCCceeE--EeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019103 168 LQKTGFIYDQNNLNKLEEFTHQMKDGWG--LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 168 ~~~~v~V~D~~tl~~i~ti~~~~peGwG--Lt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
.+.+....|.++++++..|.--..+=.+ |+|.....|+|-+ +....++|.....-+.+....+. -+|.+.|.
T Consensus 164 GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-----DINsv~ff 238 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-----DINSVRFF 238 (343)
T ss_pred CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc-----ccceEEEc
Confidence 5678899999999999999732234334 4564556788876 66888999999888888777542 45667665
Q ss_pred -CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 245 -KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 245 -~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+|.-||+--.+.+.-..|....+-++.+.-. +...-.+.+||+.-|+.||..
T Consensus 239 P~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-----------~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 239 PSGDAFATGSDDATCRLYDLRADQELAVYSHD-----------SIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred cCCCeeeecCCCceeEEEeecCCcEEeeeccC-----------cccCCceeEEEcccccEEEee
Confidence 7999999888888999999999988888421 223456899999888877763
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0072 Score=59.42 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=83.3
Q ss_pred ccCCCeeEEEEEEeC--CE-EEEEEeeCCEEEEEECCCCcEEEEEecC-C--CceeE-EeeCCCEEEEECC-----CCeE
Q 019103 145 QMEGSYFGEGLTLLG--EK-LFQVTWLQKTGFIYDQNNLNKLEEFTHQ-M--KDGWG-LATDGKVLFGSDG-----SSML 212 (346)
Q Consensus 145 ~l~~~~FgeGit~~g--~~-LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~--peGwG-Lt~Dg~~LyvSdG-----s~~l 212 (346)
++|.+ |+|++.+. .+ +..+---..-..|||..+++.+..+..+ . =+|-| +++||++||+++. ...|
T Consensus 2 ~lP~R--gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~I 79 (305)
T PF07433_consen 2 PLPAR--GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVI 79 (305)
T ss_pred CCCcc--ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEE
Confidence 45555 56777765 33 3333344556899999999999999753 1 13344 7899999999852 6689
Q ss_pred EEEeCC-CCcEEEEEEecc-CCeeeeeceeeEeeCC-EEEEEec-----------------CCCeEEEEeCCCCeEEEEE
Q 019103 213 YQIDPQ-TLKVIRKDIVRY-KGREVRNLNELEFIKG-EVWANVW-----------------QTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 213 ~vIDp~-T~kvi~~I~V~~-~G~pv~~lNELE~~~G-~LyaNv~-----------------~sn~I~vID~~TG~Vv~~I 272 (346)
-|.|.+ +++.+..+..+. +.+.+. | ..|| .|.|+|. ++..++.+|..||++++..
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPHel~----l-~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPHELL----L-MPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChhhEE----E-cCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 999998 899888887743 222221 1 1133 4444332 2457999999999999998
Q ss_pred EC
Q 019103 273 LL 274 (346)
Q Consensus 273 ~l 274 (346)
.+
T Consensus 155 ~L 156 (305)
T PF07433_consen 155 EL 156 (305)
T ss_pred ec
Confidence 66
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.015 Score=59.98 Aligned_cols=151 Identities=12% Similarity=-0.060 Sum_probs=94.4
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee---CCEEEEEECCCCcEEE-
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL---QKTGFIYDQNNLNKLE- 184 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~---~~~v~V~D~~tl~~i~- 184 (346)
++... +|+||+..|..+.+++..||+.+++-...-+++....+.+.+..+++||+.-.. .+.+..||+++.+-..
T Consensus 313 ~~v~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~ 391 (480)
T PHA02790 313 SGVPA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG 391 (480)
T ss_pred eEEEE-CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC
Confidence 44443 689999988656678999999998876666776555566788889999998432 3568889987654433
Q ss_pred -EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC-----CCeE
Q 019103 185 -EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-----TDCI 258 (346)
Q Consensus 185 -ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~-----sn~I 258 (346)
..+.+ ..+-+...-+++||+.=|. +.+.||++.+-.. +.....|.... .+...+|+|||-=.. .+.|
T Consensus 392 ~~m~~~-r~~~~~~~~~~~IYv~GG~--~e~ydp~~~~W~~---~~~m~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~v 464 (480)
T PHA02790 392 PSTYYP-HYKSCALVFGRRLFLVGRN--AEFYCESSNTWTL---IDDPIYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTI 464 (480)
T ss_pred CCCCCc-cccceEEEECCEEEEECCc--eEEecCCCCcEeE---cCCCCCCcccc-EEEEECCEEEEECCcCCCcccceE
Confidence 22333 2333444456788987553 5678998876642 22111222211 255668899985432 2345
Q ss_pred EEEeCCCCe
Q 019103 259 ARISHEDGV 267 (346)
Q Consensus 259 ~vID~~TG~ 267 (346)
-+-||++++
T Consensus 465 e~Yd~~~~~ 473 (480)
T PHA02790 465 EVYNNRTYS 473 (480)
T ss_pred EEEECCCCe
Confidence 555555554
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0051 Score=62.05 Aligned_cols=181 Identities=15% Similarity=0.160 Sum_probs=114.9
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEec-----cCCCeeEEEEEEeC---CEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019103 116 DTLFESTGLYGRSSVRRVALETGKVEAINQ-----MEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-----l~~~~FgeGit~~g---~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
+..+-|.+ ++.+|.+|+.-.+-+..... |-...--.|+.... ..+..+.-.+++|.+.|..|++.+-++.
T Consensus 94 D~vIASgS--eD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~ 171 (472)
T KOG0303|consen 94 DCVIASGS--EDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD 171 (472)
T ss_pred CceeecCC--CCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC
Confidence 45666655 78899999866543322221 21111112333321 2244445568999999999999999998
Q ss_pred cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEe---cCCCeEEEEeC
Q 019103 188 HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANV---WQTDCIARISH 263 (346)
Q Consensus 188 ~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv---~~sn~I~vID~ 263 (346)
++ +-.-.-++.||..|..+-.+.+|.+|||.+.+++..-.-..+-+|.. .+=..+|.++.+- |....++.-||
T Consensus 172 hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R---aifl~~g~i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 172 HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR---AIFLASGKIFTTGFSRMSERQIALWDP 248 (472)
T ss_pred CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcce---eEEeccCceeeeccccccccceeccCc
Confidence 75 33444567789999888899999999999999987763333223332 1223356666543 22345777777
Q ss_pred CCCeE---EEEEECCchhhhhhhccCCCCceeeEE---EEeCCCCEEEEecCCCCcEEEEE
Q 019103 264 EDGVV---LGWVLLPNLRERLVAAGYNGIDVLNGI---AWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 264 ~TG~V---v~~I~l~~l~~~~~~~~~~~~~vlNGI---A~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
++.+. ..++|. -||| -||+|.+.+|+.||....|.=-+
T Consensus 249 ~nl~eP~~~~elDt-----------------SnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 249 NNLEEPIALQELDT-----------------SNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred ccccCcceeEEecc-----------------CCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 66552 233332 2343 48999999999999999874333
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.015 Score=63.04 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=124.9
Q ss_pred CCeEEEEECCCCcEEEEec---cCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCC
Q 019103 127 RSSVRRVALETGKVEAINQ---MEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGK 201 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~---l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~ 201 (346)
...|.+|+.++|-...+.. .-+.+ -.|++.++ +++.+++-.++.+-.+|-++...+++...+ ...+.-......
T Consensus 469 ~G~Id~fNmQSGi~r~sf~~~~ah~~~-V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 469 KGTIDRFNMQSGIHRKSFGDSPAHKGE-VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred CCeEEEEEcccCeeecccccCccccCc-eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 4599999999998777762 22222 36788887 789999999999999999999999999886 334445555667
Q ss_pred EEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhh
Q 019103 202 VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRER 280 (346)
Q Consensus 202 ~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~ 280 (346)
.+.+..++-.|.++|..|.++++...-..+ .+|.+.+- ||+=.+.--++.+|-+-|..||..+.-+-++.
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~---- 618 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS---- 618 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC----
Confidence 777777888999999999999887763221 56778776 67744555578899999999999998886632
Q ss_pred hhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 281 LVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 281 ~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+.--+.|+|.|+.|-.+.-.
T Consensus 619 ----------~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 619 ----------PCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred ----------cceeeEECCCCCEEEEEEec
Confidence 23447788888888777665
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.032 Score=60.24 Aligned_cols=194 Identities=11% Similarity=0.099 Sum_probs=120.5
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
.=..+|.++.|..+..|.+ ..+|.+|+.+|++-+++++-+ +..+.... |++..++-.+++.+-+||..+-..+
T Consensus 374 ~dVRsl~vS~d~~~~~Sga---~~SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~ 447 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLASGA---GESIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASASLV 447 (888)
T ss_pred hheeEEEeecCceeeeecC---CCcEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehhhhh
Confidence 3348999997666666643 359999999999999998776 34445554 4556666789999999999999999
Q ss_pred EEEecCCCceeE--EeeCCCEEEEECCCCeEEEEeCC-----CCcEEEEEEeccCCeeeeeceeeEee----CCEEEEEe
Q 019103 184 EEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQIDPQ-----TLKVIRKDIVRYKGREVRNLNELEFI----KGEVWANV 252 (346)
Q Consensus 184 ~ti~~~~peGwG--Lt~Dg~~LyvSdGs~~l~vIDp~-----T~kvi~~I~V~~~G~pv~~lNELE~~----~G~LyaNv 252 (346)
.+++.--++=|. ++||++.....-++.+|-++|-. .+...+.+.+... +.+...+++-++ ||++.|--
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~-rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT-RTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc-eEEeccccEEEEEEcCCCcEEEEE
Confidence 999842134455 67899988777778888888721 1111111222210 111111111111 56666555
Q ss_pred cCCCeEEEEeCCCCeEEEE---------------------------------EECCchhhhhhhccCCCCceeeEEEEeC
Q 019103 253 WQTDCIARISHEDGVVLGW---------------------------------VLLPNLRERLVAAGYNGIDVLNGIAWDS 299 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~---------------------------------I~l~~l~~~~~~~~~~~~~vlNGIA~d~ 299 (346)
-..|+|.|.=.+|.+---. +|+++|.+.+-.+ +..|++ +-|-|
T Consensus 527 LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH---dDSvm~-V~F~P 602 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH---DDSVMS-VQFLP 602 (888)
T ss_pred eccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc---cCceeE-EEEcc
Confidence 5677777666666552211 1444444332221 233454 77889
Q ss_pred CCCEEEEecC
Q 019103 300 NRNRIFVTGK 309 (346)
Q Consensus 300 ~~~~LfVTGK 309 (346)
+.+.||-+||
T Consensus 603 ~~~~FFt~gK 612 (888)
T KOG0306|consen 603 KTHLFFTCGK 612 (888)
T ss_pred cceeEEEecC
Confidence 9999999886
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0087 Score=63.42 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=106.1
Q ss_pred eEEEecCCEEEEEcCCCCC---CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe------eCCEEEEEECCC
Q 019103 109 GLLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW------LQKTGFIYDQNN 179 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~---s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw------~~~~v~V~D~~t 179 (346)
|+... +|.||+..|..|. ++|-.||+.+.+-.-.-++...-.+.|++..+++||++-- .-+.+..||+.|
T Consensus 375 ~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 375 GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred eeEEE-CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 66666 5899999886553 5688999999987666667666778999999999999843 237799999976
Q ss_pred CcE--EEEEecCCCceeEEeeCCCEEEEEC---C---CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE-
Q 019103 180 LNK--LEEFTHQMKDGWGLATDGKVLFGSD---G---SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA- 250 (346)
Q Consensus 180 l~~--i~ti~~~~peGwGLt~Dg~~LyvSd---G---s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya- 250 (346)
-+- +...... .-|.|++.-++.||+-= | -++|...||+|.+...--.... +.... -+...++++||
T Consensus 454 ~~W~~~~~M~~~-R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~---~rs~~-g~~~~~~~ly~v 528 (571)
T KOG4441|consen 454 NTWTLIAPMNTR-RSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS---PRSAV-GVVVLGGKLYAV 528 (571)
T ss_pred CceeecCCcccc-cccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc---ccccc-cEEEECCEEEEE
Confidence 554 4444444 56777888899999943 3 3358889999988753321211 11110 13455677775
Q ss_pred ----EecCCCeEEEEeCCCCe
Q 019103 251 ----NVWQTDCIARISHEDGV 267 (346)
Q Consensus 251 ----Nv~~sn~I~vID~~TG~ 267 (346)
+.-..++|-..||++++
T Consensus 529 GG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 529 GGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ecccCccccceeEEcCCCCCc
Confidence 33345678888999886
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.037 Score=54.67 Aligned_cols=159 Identities=10% Similarity=0.142 Sum_probs=109.7
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
|+... +|++|+++.. | .+..+|..+|+.+=+...+. -.+.......++.+|+.+ .++.++.+|.+|++.+-++.
T Consensus 106 ~~~~~-~G~i~~g~~~-g--~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 106 PILGS-DGKIYVGSWD-G--KLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred ceEEe-CCeEEEeccc-c--eEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEe
Confidence 44444 8999999873 3 89999999999988888776 445555666778999998 67999999999999988876
Q ss_pred cCCCceeEEe------eCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEecc----CCe--eeeeceeeEeeCCEEEEEec
Q 019103 188 HQMKDGWGLA------TDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRY----KGR--EVRNLNELEFIKGEVWANVW 253 (346)
Q Consensus 188 ~~~peGwGLt------~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~----~G~--pv~~lNELE~~~G~LyaNv~ 253 (346)
.+.+ ..+. .....+|+.. + +..++-+|+++++.+-+..+.. ... .....+..-++++.+|+--+
T Consensus 181 ~~~~--~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~ 258 (370)
T COG1520 181 TPAP--LSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSY 258 (370)
T ss_pred cCCc--cccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEec
Confidence 6421 1211 2345666654 3 6689999999999987754432 111 10111222234455544443
Q ss_pred CCCeEEEEeCCCCeEEEEEECC
Q 019103 254 QTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
...+..+|..+|+.+=..+++
T Consensus 259 -~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 259 -GGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred -CCeEEEEEcCCCceEEEEecc
Confidence 455999999999999888774
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.018 Score=59.54 Aligned_cols=153 Identities=11% Similarity=0.072 Sum_probs=96.4
Q ss_pred eEEEecCCEEEEEcCCCC---CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee------CCEEEEEECCC
Q 019103 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------QKTGFIYDQNN 179 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~------~~~v~V~D~~t 179 (346)
+++.. +++||+-.|..+ .+.+.+||+.+++-....+++..-.+.+.+..+++||+.--. .+.+.+||+.+
T Consensus 337 ~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 337 GVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred eEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 45544 589999888542 356889999999876655565444566677889999997542 26789999886
Q ss_pred CcE--EEEEecCCCceeEEeeCCCEEEEECCC---------CeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEE
Q 019103 180 LNK--LEEFTHQMKDGWGLATDGKVLFGSDGS---------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (346)
Q Consensus 180 l~~--i~ti~~~~peGwGLt~Dg~~LyvSdGs---------~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~L 248 (346)
.+- +...+.+ ..|-+.+..++.+|+.-|. +.++.+||++.+-.. +.....|.... .+...+|+|
T Consensus 416 ~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~---~~~~~~~r~~~-~~~~~~~~i 490 (534)
T PHA03098 416 NKWSKGSPLPIS-HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE---LSSLNFPRINA-SLCIFNNKI 490 (534)
T ss_pred CeeeecCCCCcc-ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee---CCCCCcccccc-eEEEECCEE
Confidence 544 3333333 2344555556788886551 349999999987643 22211222211 133457888
Q ss_pred EEEecC-----CCeEEEEeCCCCe
Q 019103 249 WANVWQ-----TDCIARISHEDGV 267 (346)
Q Consensus 249 yaNv~~-----sn~I~vID~~TG~ 267 (346)
|+--.. .+.|.+.|+++.+
T Consensus 491 yv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 491 YVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEcCCcCCcccceeEEEeCCCCE
Confidence 873321 4578888888875
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.02 Score=58.32 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=92.2
Q ss_pred EEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEE
Q 019103 110 LLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 110 L~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti 186 (346)
..++||| +|..+....|+..|..+|+++|+..+-...+.....-..+++|++||.+.... ..++++|.++.+... +
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l 316 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V 316 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C
Confidence 4678888 56555555578899999999998554333332222234677888888776433 379999998876633 3
Q ss_pred ecCCCceeEEeeCCCEEEE-ECCC--------CeEEEEeCCCCcEEEEEEeccCCeeeeecee-eEee-CC-EE-EEEec
Q 019103 187 THQMKDGWGLATDGKVLFG-SDGS--------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNE-LEFI-KG-EV-WANVW 253 (346)
Q Consensus 187 ~~~~peGwGLt~Dg~~Lyv-SdGs--------~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE-LE~~-~G-~L-yaNv~ 253 (346)
.........++|||++|.. +... ..|+++|+++.+.. .+ ...+ .+| ..+. || .| |+...
T Consensus 317 t~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~L--T~~~-----~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 317 VFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RL--TANG-----VNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred ccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-EC--CCCC-----CcCCeEECCCCCEEEEEEcc
Confidence 3211122368999998744 5432 48999999988753 22 2221 122 2222 45 44 45443
Q ss_pred C-CCeEEEEeCCCCeEEEEEEC
Q 019103 254 Q-TDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 254 ~-sn~I~vID~~TG~Vv~~I~l 274 (346)
. ...+.++|. +|++...+..
T Consensus 389 ~~~~~L~~~~l-~g~~~~~l~~ 409 (419)
T PRK04043 389 GNQSALGIIRL-NYNKSFLFPL 409 (419)
T ss_pred CCcEEEEEEec-CCCeeEEeec
Confidence 3 234777776 4555555543
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.023 Score=58.87 Aligned_cols=154 Identities=19% Similarity=0.213 Sum_probs=93.2
Q ss_pred CCEEEEEEe----eCCEEEEEECCCCcEEEEEecCC-Cce-eEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCC
Q 019103 159 GEKLFQVTW----LQKTGFIYDQNNLNKLEEFTHQM-KDG-WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 159 g~~LY~ltw----~~~~v~V~D~~tl~~i~ti~~~~-peG-wGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
.+.||.++. .....+.+| .++.+....+... ... .-..+||..++.+. +.+..+|.- ++++....+....
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGY 188 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTE
T ss_pred CCcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcc
Confidence 467887766 778899999 5788888888642 122 35677888888776 899999974 7888777774421
Q ss_pred eeeeeceee-EeeCCEEEEEec-------------CCCeEEEEeCCCCeEEEEEECCchhhhhhh--------------c
Q 019103 233 REVRNLNEL-EFIKGEVWANVW-------------QTDCIARISHEDGVVLGWVLLPNLRERLVA--------------A 284 (346)
Q Consensus 233 ~pv~~lNEL-E~~~G~LyaNv~-------------~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~--------------~ 284 (346)
..+++ ++ +..||.+.+-.+ ..|.|+.|| .+|+|+..+++.+....... .
T Consensus 189 ~~~HH--D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~ 265 (477)
T PF05935_consen 189 YDFHH--DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG 265 (477)
T ss_dssp E-B-S---EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred ccccc--ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCC
Confidence 22232 22 334676554333 157899999 99999999988665421111 0
Q ss_pred cCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 285 GYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 285 ~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+..+..-.|+|.|++..+.|.|+.++=..|+.|..
T Consensus 266 ~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~ 300 (477)
T PF05935_consen 266 GGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDY 300 (477)
T ss_dssp TTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-
T ss_pred CCCCccccCccEEeCCCCeEEEEcCcceEEEEEEC
Confidence 11334578999999999999999999999999983
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.056 Score=56.27 Aligned_cols=187 Identities=14% Similarity=0.068 Sum_probs=118.3
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-eEEEEEEeCCEEEEEEeeCCEEEEEECC
Q 019103 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-FgeGit~~g~~LY~ltw~~~~v~V~D~~ 178 (346)
.|+..-| +|..-.+|+|+- .| .+-.|..|| +.-+-++.+++|+.. |..-++.-+..||+.|-.+..+.= ..+
T Consensus 285 aH~ggv~--~L~~lr~GtllS-Gg--KDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G-t~~ 357 (626)
T KOG2106|consen 285 AHDGGVF--SLCMLRDGTLLS-GG--KDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG-TLE 357 (626)
T ss_pred ecCCceE--EEEEecCccEee-cC--ccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe-eec
Confidence 6888887 777778888875 45 556999999 555667778887543 334344444559999877655432 222
Q ss_pred -CCcEEEEEecCCCceeEEe-eCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecC
Q 019103 179 -NLNKLEEFTHQMKDGWGLA-TDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (346)
Q Consensus 179 -tl~~i~ti~~~~peGwGLt-~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~ 254 (346)
.+.++-.. ++ .|=|||+ +..+-+|++-| +..+..++ ..+++=+..+.+..+. +.+. -| +.|.-..
T Consensus 358 ~~f~~~v~g-h~-delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~------~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 358 NGFTLTVQG-HG-DELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAEC------ADFHPSG-VVAVGTA 426 (626)
T ss_pred CCceEEEEe-cc-cceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeE------eeccCcc-eEEEeec
Confidence 23332222 22 3778864 34455566554 88999999 6777777777663332 2232 24 4444445
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+..-.|+|.+| +.+-++.. .+..++.++|+|+|..|-|.-+ .|.||--++
T Consensus 427 ~G~w~V~d~e~-~~lv~~~~-------------d~~~ls~v~ysp~G~~lAvgs~-d~~iyiy~V 476 (626)
T KOG2106|consen 427 TGRWFVLDTET-QDLVTIHT-------------DNEQLSVVRYSPDGAFLAVGSH-DNHIYIYRV 476 (626)
T ss_pred cceEEEEeccc-ceeEEEEe-------------cCCceEEEEEcCCCCEEEEecC-CCeEEEEEE
Confidence 77788999999 55555543 1346899999999998877654 466655544
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.046 Score=53.63 Aligned_cols=114 Identities=14% Similarity=0.203 Sum_probs=74.2
Q ss_pred EEEEEE-eCCEEEEEEeeC------CEEEEEECCCCcEEEEEecC-----------------CCceeEEeeCCCEEEEEC
Q 019103 152 GEGLTL-LGEKLFQVTWLQ------KTGFIYDQNNLNKLEEFTHQ-----------------MKDGWGLATDGKVLFGSD 207 (346)
Q Consensus 152 geGit~-~g~~LY~ltw~~------~~v~V~D~~tl~~i~ti~~~-----------------~peGwGLt~Dg~~LyvSd 207 (346)
.|||+. .++.+|++.+.. +.|+.||++ ++.+.+++++ .-||.++++||++||+.-
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 689999 678999999999 999999987 8887777421 248888999999988853
Q ss_pred -CC---------------CeEEEEeCCC-CcEEEEEEeccCC----eeeeeceeeEee-CCEEEE---E----ecCCCeE
Q 019103 208 -GS---------------SMLYQIDPQT-LKVIRKDIVRYKG----REVRNLNELEFI-KGEVWA---N----VWQTDCI 258 (346)
Q Consensus 208 -Gs---------------~~l~vIDp~T-~kvi~~I~V~~~G----~pv~~lNELE~~-~G~Lya---N----v~~sn~I 258 (346)
+. -.|..+|+.+ .+..+.....-+. ..-..+.|+.+. |++++| . .-....|
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 21 2578888877 4344443332211 012234455554 456665 1 1124468
Q ss_pred EEEeCCCC
Q 019103 259 ARISHEDG 266 (346)
Q Consensus 259 ~vID~~TG 266 (346)
..||....
T Consensus 246 ~~v~l~~a 253 (326)
T PF13449_consen 246 YRVDLSDA 253 (326)
T ss_pred EEEEcccc
Confidence 88887654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.05 Score=55.96 Aligned_cols=189 Identities=12% Similarity=0.049 Sum_probs=126.3
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
.-.+-+.|+|.-.|...+|+.+.=+|..+|-++...+..+.+..-| +-.-+++.|.......-...-.+.||..+.++.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence 3346778888778888889888777777787888777777664322 223344556634444445577899999887765
Q ss_pred EEEe-cC----CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecCCC
Q 019103 184 EEFT-HQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQTD 256 (346)
Q Consensus 184 ~ti~-~~----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~sn 256 (346)
+-=+ ++ .-+-..+++|++.|.+.=-.+.|+++-..|++.+.++++. |.- -++.+. +| +||+.+. +.
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie--G~v----~~~~fsSdsk~l~~~~~-~G 366 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE--GVV----SDFTFSSDSKELLASGG-TG 366 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec--cEE----eeEEEecCCcEEEEEcC-Cc
Confidence 5322 22 2255678999996555333789999999999999999883 332 234444 45 5777765 56
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
.|++.|..+..|+.+.--.+... =--||.++++. +|-||-+-+-
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~------------gts~~~S~ng~-ylA~GS~~Gi 410 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVH------------GTSLCISLNGS-YLATGSDSGI 410 (514)
T ss_pred eEEEEecCCcceEEEEeecCccc------------eeeeeecCCCc-eEEeccCcce
Confidence 99999999999998874433221 02256666655 6667766653
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.053 Score=52.95 Aligned_cols=151 Identities=11% Similarity=0.015 Sum_probs=90.5
Q ss_pred CCEEEEEcCCCCC---CeEEEEECCCCcEEEEecc-----CCCeeEEEEEEeCCEEEEEEeeC-----------CEEEEE
Q 019103 115 NDTLFESTGLYGR---SSVRRVALETGKVEAINQM-----EGSYFGEGLTLLGEKLFQVTWLQ-----------KTGFIY 175 (346)
Q Consensus 115 d~~LyeStGlyg~---s~V~~iDl~Tgkv~~~~~l-----~~~~FgeGit~~g~~LY~ltw~~-----------~~v~V~ 175 (346)
++.||+-.|..+. +.+.+||+.+.+-....++ +....+.+++..+++||+.--.+ +.+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 5789988775333 4789999999875543333 33334667788899999873321 468999
Q ss_pred ECCCCcEEEEEec-----CCCceeEEeeCCCEEEEEC---------C-----CCeEEEEeCCCCcEEEEEEeccCCeeee
Q 019103 176 DQNNLNKLEEFTH-----QMKDGWGLATDGKVLFGSD---------G-----SSMLYQIDPQTLKVIRKDIVRYKGREVR 236 (346)
Q Consensus 176 D~~tl~~i~ti~~-----~~peGwGLt~Dg~~LyvSd---------G-----s~~l~vIDp~T~kvi~~I~V~~~G~pv~ 236 (346)
|+++.+-.. ++. ....|-+++.-++++|+-= | .+.|+++|+++.+-...-..+....+..
T Consensus 165 d~~~~~W~~-l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 165 NIADGKWVQ-LPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred ECCCCeEee-CCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 998765432 221 1234445554455666631 1 3689999999987663222222111211
Q ss_pred eceeeEeeCCEEEEEec--------------CCCeEEEEeCCCCe
Q 019103 237 NLNELEFIKGEVWANVW--------------QTDCIARISHEDGV 267 (346)
Q Consensus 237 ~lNELE~~~G~LyaNv~--------------~sn~I~vID~~TG~ 267 (346)
. ......+++||+--- ..|+|.+.|+++.+
T Consensus 244 ~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 244 V-FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred e-eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 1 123345677776322 13689999999886
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.032 Score=53.70 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=94.4
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE--EEEEecC--CC
Q 019103 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK--LEEFTHQ--MK 191 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~--i~ti~~~--~p 191 (346)
..+++|+| |+ .+|+.|.+.||+-.+.++-+.... -.+.+..++=+.+.--...|-+||.++.+. +.+|+-. .-
T Consensus 10 ~viLvsA~-YD-hTIRfWqa~tG~C~rTiqh~dsqV-NrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 10 PVILVSAG-YD-HTIRFWQALTGICSRTIQHPDSQV-NRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred ceEEEecc-Cc-ceeeeeehhcCeEEEEEecCccce-eeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCce
Confidence 36788888 44 699999999999999998765432 124444444444444456788888887764 7777643 12
Q ss_pred ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEE
Q 019103 192 DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVL 269 (346)
Q Consensus 192 eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv 269 (346)
.-.|+-.||+++|.+-.+.++.++|......-+...... .+|++-.. .++|++.. ++..|-+=|..+....
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~s------pVn~vvlhpnQteLis~d-qsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS------PVNTVVLHPNQTELISGD-QSGNIRVWDLGENSCT 159 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCC------CcceEEecCCcceEEeec-CCCcEEEEEccCCccc
Confidence 456788899999998778899999998865555444421 23443332 24666654 3555666666665443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.028 Score=58.17 Aligned_cols=178 Identities=13% Similarity=0.077 Sum_probs=106.7
Q ss_pred CCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 103 PRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 103 ~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
+.-|.+-+++.+.+ ..++|-| +..+.+...|-+++.-.- +=+| .-+..+++.+.+.|.....+-|||..+.
T Consensus 320 pskyledfa~~~Gd~ia~VSRG-----kaFi~~~~~~~~iqv~~~~~VrY--~r~~~~~e~~vigt~dgD~l~iyd~~~~ 392 (668)
T COG4946 320 PSKYLEDFAVVNGDYIALVSRG-----KAFIMRPWDGYSIQVGKKGGVRY--RRIQVDPEGDVIGTNDGDKLGIYDKDGG 392 (668)
T ss_pred HHHhhhhhccCCCcEEEEEecC-----cEEEECCCCCeeEEcCCCCceEE--EEEccCCcceEEeccCCceEEEEecCCc
Confidence 33454555665433 3567766 556666665544322111 1111 1233345667777888889999999888
Q ss_pred cEEEEEe-cCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCE--EEE--EecC
Q 019103 181 NKLEEFT-HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE--VWA--NVWQ 254 (346)
Q Consensus 181 ~~i~ti~-~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~--Lya--Nv~~ 254 (346)
+...-.+ .+.-+..++++||+.+.++|..-+|++||.+|+++.- |.=.. -..+-+..+. |++ .|+ .-+.
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~-idkS~----~~lItdf~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL-IDKSE----YGLITDFDWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE-ecccc----cceeEEEEEcCCceeEEEecCccee
Confidence 7544443 3445888999999999999988899999999988631 11111 1222334444 344 222 3344
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019103 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
+..|-+-|.++|++...-.- . ..=..-|||||++.||-
T Consensus 468 tq~Iklydm~~~Kiy~vTT~-t-------------a~DfsPaFD~d~ryLYf 505 (668)
T COG4946 468 TQSIKLYDMDGGKIYDVTTP-T-------------AYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eeeEEEEecCCCeEEEecCC-c-------------ccccCcccCCCCcEEEE
Confidence 66788999999997543211 0 01123478888887773
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.023 Score=55.70 Aligned_cols=132 Identities=14% Similarity=0.233 Sum_probs=88.8
Q ss_pred CCcEEEEeccCCCeeEEEEEEeC---CEEEEEEeeCCEEEEEECCCCcEEEEEecC---CCceeE-EeeCCCEEEEECC-
Q 019103 137 TGKVEAINQMEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWG-LATDGKVLFGSDG- 208 (346)
Q Consensus 137 Tgkv~~~~~l~~~~FgeGit~~g---~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---~peGwG-Lt~Dg~~LyvSdG- 208 (346)
.||++..+.++.+ |+|++.+. ..+..+---..-.+|||+++.+...++.-+ .=+|-| +++||.+||.+++
T Consensus 57 aGk~v~~~~lpaR--~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 57 AGKIVFATALPAR--GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred CCceeeeeecccc--cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 5889999999887 67788764 456666555566899999999998888753 125556 7999999999863
Q ss_pred ----CCeEEEEeC-CCCcEEEEEEecc-CCeeeeeceeeEeeCCEEE-EEec-----------------CCCeEEEEeCC
Q 019103 209 ----SSMLYQIDP-QTLKVIRKDIVRY-KGREVRNLNELEFIKGEVW-ANVW-----------------QTDCIARISHE 264 (346)
Q Consensus 209 ----s~~l~vIDp-~T~kvi~~I~V~~-~G~pv~~lNELE~~~G~Ly-aNv~-----------------~sn~I~vID~~ 264 (346)
..-|-+.|. +-|+-+..+.... ..+.+. -..||+.. +++. +...++.+|.+
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~-----lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a 209 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVT-----LMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA 209 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeE-----EecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence 336777774 3455555555422 112211 12344422 2222 35679999999
Q ss_pred CCeEEEEEECC
Q 019103 265 DGVVLGWVLLP 275 (346)
Q Consensus 265 TG~Vv~~I~l~ 275 (346)
||.++.+.-++
T Consensus 210 tG~liekh~Lp 220 (366)
T COG3490 210 TGNLIEKHTLP 220 (366)
T ss_pred ccchhhhccCc
Confidence 99999998663
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0061 Score=60.37 Aligned_cols=204 Identities=16% Similarity=0.164 Sum_probs=132.1
Q ss_pred ccCCCCCCCCceeeeEEEEEEecCCCCccee---EEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEE
Q 019103 79 IRFPGVDQSPSIYTIQVVNEFPHDPRAFTQG---LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGL 155 (346)
Q Consensus 79 ~~~~~~~~~~~~~t~~Vv~t~phd~~~FTqG---L~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGi 155 (346)
.+..+.+..++++.++.=.-+..=.++-|+| |.|+.|+.-..|++ -+..+++--+++||.+....=...+..|..
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s--fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS--FDQTVRIHGLKSGKCLKEFRGHSSYVNEAT 355 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc--ccceEEEeccccchhHHHhcCccccccceE
Confidence 3343444455554443321111112334455 57888886555666 566889889999998777654444444433
Q ss_pred -EEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEe-----e-CCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019103 156 -TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLA-----T-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 156 -t~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt-----~-Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
+.+|+++.- .-.++.|-|.+.+|.+-+.+|... ++-+.+. | +-.+++|.|.+|+|++++-+ ++++++..-
T Consensus 356 ft~dG~~iis-aSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsS 432 (508)
T KOG0275|consen 356 FTDDGHHIIS-ASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSS 432 (508)
T ss_pred EcCCCCeEEE-ecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeecc
Confidence 334555544 445799999999999999999865 2333322 2 46789999999999999975 789999888
Q ss_pred ccC-Ceeeeecee-eEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019103 229 RYK-GREVRNLNE-LEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 229 ~~~-G~pv~~lNE-LE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
|.. |.. ++|. |...+..+|+-- .+..++-....+|+...++++.. .-+-|||..|.++.
T Consensus 433 GkREgGd--Fi~~~lSpkGewiYcig-ED~vlYCF~~~sG~LE~tl~VhE-------------kdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 433 GKREGGD--FINAILSPKGEWIYCIG-EDGVLYCFSVLSGKLERTLPVHE-------------KDVIGLTHHPHQNL 493 (508)
T ss_pred CCccCCc--eEEEEecCCCcEEEEEc-cCcEEEEEEeecCceeeeeeccc-------------ccccccccCcccch
Confidence 752 332 3344 333344577653 36678888889999999997732 12468888887664
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.07 Score=59.17 Aligned_cols=218 Identities=17% Similarity=0.141 Sum_probs=139.6
Q ss_pred CCCceeeeEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEE
Q 019103 86 QSPSIYTIQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLF 163 (346)
Q Consensus 86 ~~~~~~t~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY 163 (346)
.......++++..+- |+..- +-+..+||+.+++|.+ -+++|.+||..|.+.+..+.-. .-+.-|++.+. ++.+
T Consensus 112 ~~~~vE~wk~~~~l~~H~~DV--~Dv~Wsp~~~~lvS~s--~DnsViiwn~~tF~~~~vl~~H-~s~VKGvs~DP~Gky~ 186 (942)
T KOG0973|consen 112 GAKNVESWKVVSILRGHDSDV--LDVNWSPDDSLLVSVS--LDNSVIIWNAKTFELLKVLRGH-QSLVKGVSWDPIGKYF 186 (942)
T ss_pred cccccceeeEEEEEecCCCcc--ceeccCCCccEEEEec--ccceEEEEccccceeeeeeecc-cccccceEECCccCee
Confidence 344555788888875 66555 7899999999999998 4569999999999766665432 33457788886 6677
Q ss_pred EEEeeCCEEEEEECCCCcEEEEEecC---CCce---e--EEeeCCCEEEEEC----CCCeEEEEeCCCCcEEEEEEeccC
Q 019103 164 QVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDG---W--GLATDGKVLFGSD----GSSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 164 ~ltw~~~~v~V~D~~tl~~i~ti~~~---~peG---w--GLt~Dg~~LyvSd----Gs~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
...-.++++.|+++.++...++|.-+ .+.. . .-+|||++|-+.+ +...+.+|+-.|-+.-..+.-...
T Consensus 187 ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~ 266 (942)
T KOG0973|consen 187 ASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA 266 (942)
T ss_pred eeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC
Confidence 77788999999999999999988632 1111 1 1378999998865 377999999887765444333222
Q ss_pred Ceeeeecee--eEee--CC------EEE--EEe-cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEe
Q 019103 232 GREVRNLNE--LEFI--KG------EVW--ANV-WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWD 298 (346)
Q Consensus 232 G~pv~~lNE--LE~~--~G------~Ly--aNv-~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d 298 (346)
+..+-..|- +|-. || ..| +++ -++.+|+|=.+..-+-+--| +.. .+...+-++|+
T Consensus 267 p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi-----------~~l-f~~SI~DmsWs 334 (942)
T KOG0973|consen 267 PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI-----------HNL-FNKSIVDMSWS 334 (942)
T ss_pred ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh-----------hhh-hcCceeeeeEc
Confidence 222222121 1101 11 011 222 22334555444444422221 100 12234558999
Q ss_pred CCCCEEEEecCCCCcEEEEEEee
Q 019103 299 SNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 299 ~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
|||-.||+. -+.++|+-+++.+
T Consensus 335 pdG~~Lfac-S~DGtV~~i~Fee 356 (942)
T KOG0973|consen 335 PDGFSLFAC-SLDGTVALIHFEE 356 (942)
T ss_pred CCCCeEEEE-ecCCeEEEEEcch
Confidence 999999976 4889999999964
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.027 Score=53.82 Aligned_cols=135 Identities=16% Similarity=0.241 Sum_probs=90.4
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE------------EEEEEeCCEEEEE--Eee-CC--
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLFQV--TWL-QK-- 170 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg------------eGit~~g~~LY~l--tw~-~~-- 170 (346)
.|-.+. +|.||--.. +.+.|.++|+.++++.++..|+..-|. .-++.+.+-||+. +.. ++
T Consensus 72 tG~vVY-ngslYY~~~--~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~i 148 (250)
T PF02191_consen 72 TGHVVY-NGSLYYNKY--NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNI 148 (250)
T ss_pred CCeEEE-CCcEEEEec--CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcE
Confidence 356666 477776644 788999999999999988888765444 5577777778876 333 32
Q ss_pred EEEEEECCCCcEEEEEecC-----CCceeEEeeCCCEEEEECC-----CCeEEEEeCCCCcEEEEEEeccCCeeeeecee
Q 019103 171 TGFIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDG-----SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~-----~peGwGLt~Dg~~LyvSdG-----s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE 240 (346)
.+..+|+++|++..+..+. ..+..-+| +.||+.+. +.--+.+|+.|.+.. .+.+.-. ++...+..
T Consensus 149 vvskld~~tL~v~~tw~T~~~k~~~~naFmvC---GvLY~~~s~~~~~~~I~yafDt~t~~~~-~~~i~f~-~~~~~~~~ 223 (250)
T PF02191_consen 149 VVSKLDPETLSVEQTWNTSYPKRSAGNAFMVC---GVLYATDSYDTRDTEIFYAFDTYTGKEE-DVSIPFP-NPYGNISM 223 (250)
T ss_pred EEEeeCcccCceEEEEEeccCchhhcceeeEe---eEEEEEEECCCCCcEEEEEEECCCCcee-ceeeeec-cccCceEe
Confidence 2466999999999999763 12222244 68888763 224478899988775 3444321 23334445
Q ss_pred eEee--CCEEEE
Q 019103 241 LEFI--KGEVWA 250 (346)
Q Consensus 241 LE~~--~G~Lya 250 (346)
|.|- |.+||+
T Consensus 224 l~YNP~dk~LY~ 235 (250)
T PF02191_consen 224 LSYNPRDKKLYA 235 (250)
T ss_pred eeECCCCCeEEE
Confidence 6555 678886
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.017 Score=58.24 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=73.8
Q ss_pred CCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCC----Ce--EEEE
Q 019103 189 QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQT----DC--IARI 261 (346)
Q Consensus 189 ~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s----n~--I~vI 261 (346)
+.|-|..+...|+.||++|.==-|++|||+..+ ...+....+|+|+.++|.|..+ +|.||-|..-+ .+ ..+.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~-a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGL-AELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeEEECCCCCc-ceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence 357777777778899999988889999999877 2233333479999999999887 47788766433 11 1122
Q ss_pred eC-CCCeEEEEEECCc-hhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 262 SH-EDGVVLGWVLLPN-LRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 262 D~-~TG~Vv~~I~l~~-l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
.- .+|++. ++|-.. -...+. .....+||+|.+||++.+.++-
T Consensus 194 ~g~~~GRl~-~YD~~tK~~~VLl----d~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 194 EGDPTGRLF-RYDPSTKVTKVLL----DGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred cCCCccceE-EecCcccchhhhh----hcccccccccCCCCCCEEEEEe
Confidence 21 455533 333211 111111 2345789999999999776663
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.26 Score=48.47 Aligned_cols=199 Identities=19% Similarity=0.193 Sum_probs=109.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
.-.+|.++.+.|.+ |+ +..|+++|+.+++......-+... ..+... .+.+....| ++++-++|+..-....+
T Consensus 58 L~c~F~d~~~~~~G-~~--dg~vr~~Dln~~~~~~igth~~~i--~ci~~~~~~~~vIsgsW-D~~ik~wD~R~~~~~~~ 131 (323)
T KOG1036|consen 58 LDCAFADESTIVTG-GL--DGQVRRYDLNTGNEDQIGTHDEGI--RCIEYSYEVGCVISGSW-DKTIKFWDPRNKVVVGT 131 (323)
T ss_pred eeeeccCCceEEEe-cc--CceEEEEEecCCcceeeccCCCce--EEEEeeccCCeEEEccc-CccEEEEeccccccccc
Confidence 45566665677766 43 349999999999754333322221 122222 344444445 68999999998777777
Q ss_pred EecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEE---EeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEe
Q 019103 186 FTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD---IVRYKGREVRNLNELEFIKGEVWANVWQTDCIARIS 262 (346)
Q Consensus 186 i~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I---~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID 262 (346)
+..+ .-=+.++-.|++|.|.-....+.+.|..+++.--.. .+...-+-+. + +.+++=||.---...|+|=+
T Consensus 132 ~d~~-kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~----~-~pn~eGy~~sSieGRVavE~ 205 (323)
T KOG1036|consen 132 FDQG-KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVA----L-VPNGEGYVVSSIEGRVAVEY 205 (323)
T ss_pred cccC-ceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEE----E-ecCCCceEEEeecceEEEEc
Confidence 7765 344456777999999665679999999887652211 1111001111 1 11444444433344444443
Q ss_pred CCCCeEE--EEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019103 263 HEDGVVL--GWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 263 ~~TG~Vv--~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
.++-+-. ..+.+ .+-.. .+.+....-..|.|||.|- ...|+||...+.+--=++.+
T Consensus 206 ~d~s~~~~skkyaF-kCHr~-~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 206 FDDSEEAQSKKYAF-KCHRL-SEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred cCCchHHhhhceeE-Eeeec-ccCCceEEEEeceeEeccc-cceEEecCCCceEEEccCcc
Confidence 3333111 11111 11000 0001111224599999998 66788999888876666554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.013 Score=57.36 Aligned_cols=115 Identities=17% Similarity=0.303 Sum_probs=80.3
Q ss_pred eEEeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE-EecCCCeEEEEeCCCCe-EEE
Q 019103 194 WGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA-NVWQTDCIARISHEDGV-VLG 270 (346)
Q Consensus 194 wGLt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya-Nv~~sn~I~vID~~TG~-Vv~ 270 (346)
...+||.+.||+ .|.-..|..++. +++++++|+... ++.+..+||++|-.|| .......+.+|-.+.+. ++.
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~-~GdlirtiPL~g----~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTK-EGDLIRTIPLTG----FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEec-CCceEEEecccc----cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 344567889998 567778999996 599999999954 3444459999887776 55556667666555542 221
Q ss_pred ----EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC-cEEEEEEee
Q 019103 271 ----WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP-KLYEINLRE 321 (346)
Q Consensus 271 ----~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp-~l~ev~l~~ 321 (346)
.+.+... ...+.-+.|+||||++++|||+-..-| .||+++..|
T Consensus 166 ~~~~~i~L~~~--------~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 166 AKVQKIPLGTT--------NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred ccceEEecccc--------CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence 2222111 112567899999999999999988887 688888543
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.026 Score=57.39 Aligned_cols=201 Identities=12% Similarity=0.130 Sum_probs=133.5
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-c-CCCeeEEEEEEeCCEEEEEEeeCCE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-M-EGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l-~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
+....||+....-.+.-+..|||.=+++.+ -+-.+..||++-. ++.... + .+...-..++.+|+.++.++ .+.+
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs--~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~ 377 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGS--PDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKK 377 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecC--CCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEe-cccc
Confidence 445566665222224456668896666655 3458999999854 333332 1 24455677888999988887 6788
Q ss_pred EEEEECCCCcEEEEEecCC-CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC---E
Q 019103 172 GFIYDQNNLNKLEEFTHQM-KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG---E 247 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~~-peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G---~ 247 (346)
+..|+..++...+-+..+. -.-..++.||+.+.+.-....++.+|.+..+++++-.=...|+-+- =.+.+| .
T Consensus 378 i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI----rSCFgg~~~~ 453 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFII----RSCFGGGNDK 453 (519)
T ss_pred eeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEE----EeccCCCCcc
Confidence 9999999888877676541 2334578899988887789999999998666554433222222111 112232 3
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
..|.--.++.|.+=+-.+|+.++.+.=. ...-|.+||+|...+.|-.+...+++-
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~LsGH-------------s~~vNcVswNP~~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLSGH-------------SKTVNCVSWNPADPEMFASASDDGTIR 508 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeecCC-------------cceeeEEecCCCCHHHhhccCCCCeEE
Confidence 3344445677999999999999888321 125699999999999998888877754
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.011 Score=56.57 Aligned_cols=97 Identities=19% Similarity=0.198 Sum_probs=64.7
Q ss_pred eEEEecCC-EEEEEcCCCCCCeEEEEE--CCCCcEEEEe---ccC-----CCeeEEEEEEeC-CEEEEEEeeCCEEEEEE
Q 019103 109 GLLYAEND-TLFESTGLYGRSSVRRVA--LETGKVEAIN---QME-----GSYFGEGLTLLG-EKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 109 GL~~~~d~-~LyeStGlyg~s~V~~iD--l~Tgkv~~~~---~l~-----~~~FgeGit~~g-~~LY~ltw~~~~v~V~D 176 (346)
||+.+-|. ++|....+ .-+|-.|| ..||.+.++- ++. +.+++.|++++. +.||+++|..++|+.+|
T Consensus 162 gl~Wd~d~K~fY~iDsl--n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSL--NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred cccccccCcEEEEEccC--ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 55555333 45655443 23564455 7787654432 221 356788999975 78999999999999999
Q ss_pred CCCCcEEEEEecCCCceeEEeeCCC---EEEEEC
Q 019103 177 QNNLNKLEEFTHQMKDGWGLATDGK---VLFGSD 207 (346)
Q Consensus 177 ~~tl~~i~ti~~~~peGwGLt~Dg~---~LyvSd 207 (346)
+.|++.+.+|..+.+.=--.+.-|+ .+|++-
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 9999999999876433333444454 678753
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.073 Score=52.37 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=42.0
Q ss_pred CCEEEEEecCCCeEEEEeCCCC-eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 245 KGEVWANVWQTDCIARISHEDG-VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG-~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
.|.+++..|....|..++.+++ ++...-.+- . ....-|-+||..|||. |||+--.-++||+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~-------~~~~r~~~v~~~pDG~-Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL---G-------GFGGRPRDVAQGPDGA-LYVSDDSDGKIYR 331 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEEC---T-------TSSS-EEEEEEETTSE-EEEEE-TTTTEEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEcc---c-------cCCCCceEEEEcCCCe-EEEEECCCCeEeC
Confidence 6789999999999999999854 555554431 1 1122578999999855 5555448888885
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.036 Score=54.92 Aligned_cols=115 Identities=19% Similarity=0.284 Sum_probs=76.0
Q ss_pred EEEEEeCCE-EEEE---------EeeCCE---EEEEECCCCcEEEE-EecCCCceeEEeeCCCEEEEEC-CCCeEEEEeC
Q 019103 153 EGLTLLGEK-LFQV---------TWLQKT---GFIYDQNNLNKLEE-FTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDP 217 (346)
Q Consensus 153 eGit~~g~~-LY~l---------tw~~~~---v~V~D~~tl~~i~t-i~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp 217 (346)
-|++..+++ -|+. -|++++ +.|+|..+.+++.+ +. +|++-- .-+++||++| |..+|..+|+
T Consensus 155 NGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLs--mPhSPR--WhdgrLwvldsgtGev~~vD~ 230 (335)
T TIGR03032 155 NGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLS--MPHSPR--WYQGKLWLLNSGRGELGYVDP 230 (335)
T ss_pred cceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCcc--CCcCCc--EeCCeEEEEECCCCEEEEEcC
Confidence 356665544 5643 255543 78889888877653 22 123111 1378999999 7999999999
Q ss_pred CCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCC------------------e-EEEEeCCCCeEEEEEECCch
Q 019103 218 QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTD------------------C-IARISHEDGVVLGWVLLPNL 277 (346)
Q Consensus 218 ~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn------------------~-I~vID~~TG~Vv~~I~l~~l 277 (346)
+|++...-..+ .|.|.+ |.+.++.++|..-+-. | |.|||.+||.+++++.+.+.
T Consensus 231 ~~G~~e~Va~v--pG~~rG----L~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~ 303 (335)
T TIGR03032 231 QAGKFQPVAFL--PGFTRG----LAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGV 303 (335)
T ss_pred CCCcEEEEEEC--CCCCcc----cceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCc
Confidence 98877655555 345544 6666556666543311 3 89999999999999987443
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.16 Score=50.62 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=106.1
Q ss_pred eEEEecCCE--EE-EEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE-EEEEEeCCEEEEEEeeC----------CEEEE
Q 019103 109 GLLYAENDT--LF-ESTGLYGRSSVRRVALETGKVEAINQMEGSYFG-EGLTLLGEKLFQVTWLQ----------KTGFI 174 (346)
Q Consensus 109 GL~~~~d~~--Ly-eStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg-eGit~~g~~LY~ltw~~----------~~v~V 174 (346)
++.++|||+ +| ++.|..+...|+++|++||+.+... ++...|. .+-+.+++.+|-..+.+ +.|+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 567788884 33 4566345578999999999876543 2222222 22333445666665443 45788
Q ss_pred EECCCCcEEEEEecC---CCc---eeEEeeCCCEEEE-EC-C-C-CeEEEEeCCCC----cEEEEEEeccCCeeeeecee
Q 019103 175 YDQNNLNKLEEFTHQ---MKD---GWGLATDGKVLFG-SD-G-S-SMLYQIDPQTL----KVIRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 175 ~D~~tl~~i~ti~~~---~pe---GwGLt~Dg~~Lyv-Sd-G-s-~~l~vIDp~T~----kvi~~I~V~~~G~pv~~lNE 240 (346)
.+..|...-...=++ .+. +...+.|+++|++ +. + + +.++++|..+. ...+.+.....|.. ..
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~----~~ 282 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE----YY 282 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E----EE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE----EE
Confidence 887766443222221 123 4557899999987 33 4 5 79999999874 33444444333332 12
Q ss_pred eEeeCCEEEE-EecC--CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 241 LEFIKGEVWA-NVWQ--TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 241 LE~~~G~Lya-Nv~~--sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
++..++.+|+ ++.. ...|+.+|.++.....+..+ +. .+ .....+.++... ++.|+++-. -+-.-+|
T Consensus 283 v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~--l~----~~--~~~~~l~~~~~~--~~~Lvl~~~-~~~~~~l 351 (414)
T PF02897_consen 283 VDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV--LI----PE--DEDVSLEDVSLF--KDYLVLSYR-ENGSSRL 351 (414)
T ss_dssp EEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE--EE--------SSSEEEEEEEEE--TTEEEEEEE-ETTEEEE
T ss_pred EEccCCEEEEeeCCCCCCcEEEEecccccccccceeE--Ec----CC--CCceeEEEEEEE--CCEEEEEEE-ECCccEE
Confidence 5556788775 5543 24688888887763111110 01 00 123477777776 345555433 2334444
Q ss_pred EEee
Q 019103 318 NLRE 321 (346)
Q Consensus 318 ~l~~ 321 (346)
++..
T Consensus 352 ~v~~ 355 (414)
T PF02897_consen 352 RVYD 355 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.14 Score=50.85 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=62.1
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEE-ECCC-----CcEEEEe-ccCC-----CeeEEEEEEeC-CEEEEEEee---
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRV-ALET-----GKVEAIN-QMEG-----SYFGEGLTLLG-EKLFQVTWL--- 168 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~i-Dl~T-----gkv~~~~-~l~~-----~~FgeGit~~g-~~LY~ltw~--- 168 (346)
.+..||++.++| ||+++. ..|.++ |.+. ++...-+ .++. ..+..|++... ++||++.-.
T Consensus 72 ~~p~Gi~~~~~G-lyV~~~----~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~ 146 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVATP----PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLA 146 (367)
T ss_pred CCccceeEecCC-EEEeCC----CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCC
Confidence 345799999888 999854 478877 4432 1211111 2222 33455666643 589986551
Q ss_pred ----------------CCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECC-CCeEEEEe
Q 019103 169 ----------------QKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDG-SSMLYQID 216 (346)
Q Consensus 169 ----------------~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdG-s~~l~vID 216 (346)
.+.++.+|+++.+ +..+..+ .|.|.+++++|+ ||++|. ......++
T Consensus 147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~ 211 (367)
T TIGR02604 147 SKVTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT 211 (367)
T ss_pred ceeccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence 2579999998654 3455555 356666777664 577774 43444333
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.13 Score=49.46 Aligned_cols=135 Identities=13% Similarity=0.189 Sum_probs=87.7
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE------------EEEEEeCCEEEEE--Eee-CC-E
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLFQV--TWL-QK-T 171 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg------------eGit~~g~~LY~l--tw~-~~-~ 171 (346)
.|..+. +|.||.--. +...|.++|+.++++..+..++..-|. .-++++.+-||+. +.. ++ .
T Consensus 77 tG~VVY-ngslYY~~~--~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i 153 (255)
T smart00284 77 TGVVVY-NGSLYFNKF--NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI 153 (255)
T ss_pred ccEEEE-CceEEEEec--CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE
Confidence 466666 588888644 678999999999999888777643221 4567777778876 332 23 3
Q ss_pred E-EEEECCCCcEEEEEecC-----CCceeEEeeCCCEEEEECC-----CCeEEEEeCCCCcEEEEEEeccCCeeeeecee
Q 019103 172 G-FIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDG-----SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 172 v-~V~D~~tl~~i~ti~~~-----~peGwGLt~Dg~~LyvSdG-----s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE 240 (346)
+ ..+|+.||++..+..++ ..+..-+| ..||+.+. +.--+..|+.|.+... +.+.-. ++...+..
T Consensus 154 vvSkLnp~tL~ve~tW~T~~~k~sa~naFmvC---GvLY~~~s~~~~~~~I~yayDt~t~~~~~-~~i~f~-n~y~~~s~ 228 (255)
T smart00284 154 VISKLNPATLTIENTWITTYNKRSASNAFMIC---GILYVTRSLGSKGEKVFYAYDTNTGKEGH-LDIPFE-NMYEYISM 228 (255)
T ss_pred EEEeeCcccceEEEEEEcCCCcccccccEEEe---eEEEEEccCCCCCcEEEEEEECCCCccce-eeeeec-ccccccee
Confidence 3 57999999999998864 22333344 68899762 2346788999877553 333211 22333344
Q ss_pred eEee--CCEEEE
Q 019103 241 LEFI--KGEVWA 250 (346)
Q Consensus 241 LE~~--~G~Lya 250 (346)
|.|- |.+||+
T Consensus 229 l~YNP~d~~LY~ 240 (255)
T smart00284 229 LDYNPNDRKLYA 240 (255)
T ss_pred ceeCCCCCeEEE
Confidence 5544 678886
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.4 Score=46.64 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=64.1
Q ss_pred eEEEecCCEEEEEcCCCC---------CCeEEEEECCCCcEEEEe-ccCCCeeEEEEE-EeCCEEEEEEee---------
Q 019103 109 GLLYAENDTLFESTGLYG---------RSSVRRVALETGKVEAIN-QMEGSYFGEGLT-LLGEKLFQVTWL--------- 168 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg---------~s~V~~iDl~Tgkv~~~~-~l~~~~FgeGit-~~g~~LY~ltw~--------- 168 (346)
+++.. +++||+-.|... -+.+.+||+.+++-.... .++...++.... ..+++||+.--.
T Consensus 58 ~~~~~-~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~ 136 (346)
T TIGR03547 58 VAAAI-DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYF 136 (346)
T ss_pred eEEEE-CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHH
Confidence 55554 589999988532 146889999998765543 344445555444 689999997432
Q ss_pred ------------------------------CCEEEEEECCCC--cEEEEEecCCCceeEEeeCCCEEEEECC
Q 019103 169 ------------------------------QKTGFIYDQNNL--NKLEEFTHQMKDGWGLATDGKVLFGSDG 208 (346)
Q Consensus 169 ------------------------------~~~v~V~D~~tl--~~i~ti~~~~peGwGLt~Dg~~LyvSdG 208 (346)
.+.+.+||+.+. +.+..++.....+-+++.-+++||+.-|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG 208 (346)
T TIGR03547 137 ADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLING 208 (346)
T ss_pred hhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEee
Confidence 267999998765 4444444322356666666778888543
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.62 Score=45.88 Aligned_cols=204 Identities=12% Similarity=0.047 Sum_probs=137.1
Q ss_pred eEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCC-EEEEEEeeCC
Q 019103 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE-KLFQVTWLQK 170 (346)
Q Consensus 93 ~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~-~LY~ltw~~~ 170 (346)
++.-+++. |-.+- .-+-+++|.+.++|+.+.| ++.+||.-|..-++.++++.. +-..++..+. .....--.+|
T Consensus 45 ~~~rr~LkGH~~Ki--~~~~ws~Dsr~ivSaSqDG--klIvWDs~TtnK~haipl~s~-WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKI--YAMDWSTDSRRIVSASQDG--KLIVWDSFTTNKVHAIPLPSS-WVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred eeeEEEecccccce--eeeEecCCcCeEEeeccCC--eEEEEEcccccceeEEecCce-eEEEEEECCCCCeEEecCcCc
Confidence 33334432 54444 4788889999999988655 999999998877788888854 4566677653 3445578899
Q ss_pred EEEEEECCCCcEEEEEec----CCCceeEEe---eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe
Q 019103 171 TGFIYDQNNLNKLEEFTH----QMKDGWGLA---TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~----~~peGwGLt---~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~ 243 (346)
...||+.++...-+..++ ..-.|+-=+ .|..+|..+-|+.+...+|.++++.+.... |-.|--+. | .|..
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~s-l-sl~p 196 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMS-L-SLSP 196 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec-CCcccEEE-E-ecCC
Confidence 999999987732222222 112333311 256778888899999999999998765443 11122111 1 1223
Q ss_pred eCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc--EEEEE
Q 019103 244 IKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK--LYEIN 318 (346)
Q Consensus 244 ~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~--l~ev~ 318 (346)
-++..|+.---+..-.+=|...|..+.+..-. +.-.|.+.|-|+|. -|+||-...+ ||.+|
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-------------esDINsv~ffP~G~-afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-------------ESDINSVRFFPSGD-AFATGSDDATCRLYDLR 259 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeeccc-------------ccccceEEEccCCC-eeeecCCCceeEEEeec
Confidence 37889988776777888899999998888431 12358899999875 5889888765 55554
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.35 Score=47.13 Aligned_cols=192 Identities=15% Similarity=0.121 Sum_probs=124.1
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEE-eeCCEEEEEECCCCc
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVT-WLQKTGFIYDQNNLN 181 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~lt-w~~~~v~V~D~~tl~ 181 (346)
+|-|| +-|..+|-|+.|++ .++...+|=..+|+.+..+.= ....|- ++++.+.=+++| --++.+-..|.++++
T Consensus 11 RplTq-iKyN~eGDLlFsca--KD~~~~vw~s~nGerlGty~GHtGavW~--~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 11 RPLTQ-IKYNREGDLLFSCA--KDSTPTVWYSLNGERLGTYDGHTGAVWC--CDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccce-EEecCCCcEEEEec--CCCCceEEEecCCceeeeecCCCceEEE--EEecCCcceeeeccccceeEEEEcCCCc
Confidence 45433 56666788888888 778999999889998888753 345555 455544333343 446788999999999
Q ss_pred EEEEEecCCC-ceeEEeeCCCE-EEEEC---C-CCeEEEEeCCC-------CcEEEEEEeccCCeeeeeceeeEeeCCEE
Q 019103 182 KLEEFTHQMK-DGWGLATDGKV-LFGSD---G-SSMLYQIDPQT-------LKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (346)
Q Consensus 182 ~i~ti~~~~p-eGwGLt~Dg~~-LyvSd---G-s~~l~vIDp~T-------~kvi~~I~V~~~G~pv~~lNELE~~~G~L 248 (346)
++++++++.+ -+..++.+|.. |+.+| | +..|.++|.+. .+...+|+..+. ++...+ +.+-+..|
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-kit~a~--Wg~l~~~i 162 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-KITSAL--WGPLGETI 162 (327)
T ss_pred EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc-ceeeee--ecccCCEE
Confidence 9999998732 45567888876 56677 3 78999999873 333555655441 221111 22223344
Q ss_pred EEEecCCCeEEEEeCCCCeEE-EEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 249 WANVWQTDCIARISHEDGVVL-GWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 249 yaNv~~sn~I~vID~~TG~Vv-~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
.+ .-.+..|..-|..+|+.+ ..... + ....|-|-++++ ...||||-...+-..+.
T Consensus 163 i~-Ghe~G~is~~da~~g~~~v~s~~~---------h----~~~Ind~q~s~d-~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 163 IA-GHEDGSISIYDARTGKELVDSDEE---------H----SSKINDLQFSRD-RTYFITGSKDTTAKLVD 218 (327)
T ss_pred EE-ecCCCcEEEEEcccCceeeechhh---------h----ccccccccccCC-cceEEecccCccceeee
Confidence 44 345788999999999643 22211 1 124567888876 67899987765444433
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.38 Score=49.61 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=92.2
Q ss_pred CCEEEEEcCCCC---CCeEEEEECCCCcEEEEecc---CCCeeEEEEEEeCCEEEEEEee-----CCEEEEEECCCCcEE
Q 019103 115 NDTLFESTGLYG---RSSVRRVALETGKVEAINQM---EGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQNNLNKL 183 (346)
Q Consensus 115 d~~LyeStGlyg---~s~V~~iDl~Tgkv~~~~~l---~~~~FgeGit~~g~~LY~ltw~-----~~~v~V~D~~tl~~i 183 (346)
++.||+-.|..+ .+.+.++|+.+.+-....++ +....+..++..+++||+.--. -+.+.+||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 578999887543 26799999999876554444 3333456778889999997432 356889998876543
Q ss_pred EEEec-----CCCceeEEeeCCCEEEEE---CC--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEec
Q 019103 184 EEFTH-----QMKDGWGLATDGKVLFGS---DG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW 253 (346)
Q Consensus 184 ~ti~~-----~~peGwGLt~Dg~~LyvS---dG--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~ 253 (346)
. ++. ....+-+++.-++++|+- ++ .+.++++|+++.+-...-..+....|.... .....+++||+---
T Consensus 308 ~-~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~-~~~~~~~~iyv~GG 385 (470)
T PLN02193 308 H-CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVF-ASAAVGKHIVIFGG 385 (470)
T ss_pred e-CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCccee-EEEEECCEEEEECC
Confidence 2 221 012344444334456653 33 478999999998875432222211121111 13345777775332
Q ss_pred --------------CCCeEEEEeCCCCeE
Q 019103 254 --------------QTDCIARISHEDGVV 268 (346)
Q Consensus 254 --------------~sn~I~vID~~TG~V 268 (346)
..|++.+.|++|.+=
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEE
Confidence 236799999999864
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.14 Score=50.72 Aligned_cols=171 Identities=14% Similarity=0.151 Sum_probs=113.5
Q ss_pred eeEEEEEE-ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC
Q 019103 92 TIQVVNEF-PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 92 t~~Vv~t~-phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
.++.++++ +|-.+ ..+|.+.|.++|=.|-| |+..++.||+-+|+.-...++....=-.-....|++.++.- .+
T Consensus 116 ~W~~~~slK~H~~~--Vt~lsiHPS~KLALsVg--~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~ 189 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQ--VTDLSIHPSGKLALSVG--GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RN 189 (362)
T ss_pred CeEEeeeecccccc--cceeEecCCCceEEEEc--CCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--cc
Confidence 46788888 56333 58999999999998977 88899999999999888888865431222223456676665 68
Q ss_pred EEEEEECCCCcEEEEEecCCCceeEEee-CCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE-ee--CC
Q 019103 171 TGFIYDQNNLNKLEEFTHQMKDGWGLAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE-FI--KG 246 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~peGwGLt~-Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE-~~--~G 246 (346)
++-+|-.++-++..++..+ ..-.-+++ ++..|+|.=....|.+.|.........+....+ .+ -.+- |. ++
T Consensus 190 ~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RV---K~i~~~~~~~~ 263 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RV---KDIASYTNPEH 263 (362)
T ss_pred EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchh--he---eeeEEEecCCc
Confidence 8889988888888888876 23334444 567788754457888999887554433333221 11 1111 22 35
Q ss_pred EEEEEecCCCeEEEEeCCCC-----eEEEEEEC
Q 019103 247 EVWANVWQTDCIARISHEDG-----VVLGWVLL 274 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG-----~Vv~~I~l 274 (346)
++.++.--+..|.|=|.+.. +.++.+|+
T Consensus 264 ~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~ 296 (362)
T KOG0294|consen 264 EYLVTASSDGFIKVWDIDMETKKRPTLLAELNT 296 (362)
T ss_pred eEEEEeccCceEEEEEccccccCCcceeEEeec
Confidence 67777766666666666655 45566655
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.098 Score=51.75 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=112.3
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEE--eeCCC--EEEEECCCCeEEEEeCCCCcEEEEEEeccCCeee
Q 019103 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGL--ATDGK--VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV 235 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGL--t~Dg~--~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv 235 (346)
++..+..-.+.++.+||..+.++++.+-....-=-+| .++-. +|...-.+..|.++|....+.++++.-..+
T Consensus 53 ~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~---- 128 (362)
T KOG0294|consen 53 GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG---- 128 (362)
T ss_pred ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccc----
Confidence 4334446778899999999999999886531111123 33332 677655578999999999999988887542
Q ss_pred eeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 236 RNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 236 ~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
++|.|... -|+|-.++..+..+-.-|.-+|++-...++... ..+ |-|+|+|++|+|.+++==-+
T Consensus 129 -~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~------------at~--v~w~~~Gd~F~v~~~~~i~i 193 (362)
T KOG0294|consen 129 -QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK------------ATL--VSWSPQGDHFVVSGRNKIDI 193 (362)
T ss_pred -ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc------------cee--eEEcCCCCEEEEEeccEEEE
Confidence 35667776 478888998888888888889988777755221 122 88999999999999999999
Q ss_pred EEEEEeeccccccCCCchhHHHhhhhh
Q 019103 315 YEINLREMKRERKDGFNVDTIIEQLCL 341 (346)
Q Consensus 315 ~ev~l~~~~~~~~~~~~~~~~~~~~~~ 341 (346)
|+++.-.+-..++ +=++++|.
T Consensus 194 ~q~d~A~v~~~i~------~~~r~l~~ 214 (362)
T KOG0294|consen 194 YQLDNASVFREIE------NPKRILCA 214 (362)
T ss_pred EecccHhHhhhhh------ccccceee
Confidence 9998755444432 22566774
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.15 Score=52.95 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=33.6
Q ss_pred CCCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEE
Q 019103 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVE 141 (346)
Q Consensus 86 ~~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~ 141 (346)
+.+.-++++++.+- =..| -+|+|.|||+||++-- +..+|.+++..+++..
T Consensus 15 ~~p~~f~~~~va~G--L~~P--w~maflPDG~llVtER--~~G~I~~v~~~~~~~~ 64 (454)
T TIGR03606 15 AASENFDKKVLLSG--LNKP--WALLWGPDNQLWVTER--ATGKILRVNPETGEVK 64 (454)
T ss_pred cCCCCcEEEEEECC--CCCc--eEEEEcCCCeEEEEEe--cCCEEEEEeCCCCcee
Confidence 34455666666541 1345 4999999999998842 2359999998877543
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.48 Score=47.14 Aligned_cols=197 Identities=14% Similarity=0.160 Sum_probs=114.7
Q ss_pred eEEEecCC-E-EEEEcCCC-C------CCeEEEEECCCCcEEEEe--ccCCCee---EEEEEEeCCEEEEEEee--C-CE
Q 019103 109 GLLYAEND-T-LFESTGLY-G------RSSVRRVALETGKVEAIN--QMEGSYF---GEGLTLLGEKLFQVTWL--Q-KT 171 (346)
Q Consensus 109 GL~~~~d~-~-LyeStGly-g------~s~V~~iDl~Tgkv~~~~--~l~~~~F---geGit~~g~~LY~ltw~--~-~~ 171 (346)
++.+.+|+ . +|...+.. . ...|..+++.|+.-...+ .-+...| +.+.+.+++.|++.... + +.
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 48888886 3 44544431 1 567899999887543222 2233334 55555567777765433 3 67
Q ss_pred EEEEECCCC----cEEEEEecC-CCceeEEeeCCCEEEE-ECC---CCeEEEEeCCCCcE--EEEEEeccCCeeeeecee
Q 019103 172 GFIYDQNNL----NKLEEFTHQ-MKDGWGLATDGKVLFG-SDG---SSMLYQIDPQTLKV--IRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 172 v~V~D~~tl----~~i~ti~~~-~peGwGLt~Dg~~Lyv-SdG---s~~l~vIDp~T~kv--i~~I~V~~~G~pv~~lNE 240 (346)
++++|..+. .....+... ...-..+.+.|+.+|+ ||. ...|..+|.++... ...+.+... +-..+..
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~--~~~~l~~ 331 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED--EDVSLED 331 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S--SSEEEEE
T ss_pred EEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC--CceeEEE
Confidence 999999875 333343322 1233345566887776 873 55999999888764 222333221 1113456
Q ss_pred eEeeCCEEEEEec--CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC---CcEE
Q 019103 241 LEFIKGEVWANVW--QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW---PKLY 315 (346)
Q Consensus 241 LE~~~G~LyaNv~--~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W---p~l~ 315 (346)
+...+++|+++.. ....|.++|...+.....+.++.. ....|+..+++++.++++=-.| +.+|
T Consensus 332 ~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~------------g~v~~~~~~~~~~~~~~~~ss~~~P~~~y 399 (414)
T PF02897_consen 332 VSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEA------------GSVSGVSGDFDSDELRFSYSSFTTPPTVY 399 (414)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSS------------SEEEEEES-TT-SEEEEEEEETTEEEEEE
T ss_pred EEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcc------------eEEeccCCCCCCCEEEEEEeCCCCCCEEE
Confidence 7777888776553 345799999997787788866332 2336777788899888876555 5566
Q ss_pred EEEE
Q 019103 316 EINL 319 (346)
Q Consensus 316 ev~l 319 (346)
...+
T Consensus 400 ~~d~ 403 (414)
T PF02897_consen 400 RYDL 403 (414)
T ss_dssp EEET
T ss_pred EEEC
Confidence 6654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.081 Score=48.13 Aligned_cols=98 Identities=14% Similarity=0.094 Sum_probs=69.5
Q ss_pred ceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEE
Q 019103 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKL 183 (346)
Q Consensus 107 TqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i 183 (346)
...++++|+| ++.+..|.. ...|..||.+ ++.+..+.-... -..-.++.|+.|..+... ++.+.++|.++.+.+
T Consensus 62 I~~~~WsP~g~~favi~g~~-~~~v~lyd~~-~~~i~~~~~~~~-n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i 138 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSM-PAKVTLYDVK-GKKIFSFGTQPR-NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI 138 (194)
T ss_pred eEEEEECcCCCEEEEEEccC-CcccEEEcCc-ccEeEeecCCCc-eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence 4789999988 576777743 3499999997 555555432221 122234466766666533 568999999999999
Q ss_pred EEEecCCCceeEEeeCCCEEEEEC
Q 019103 184 EEFTHQMKDGWGLATDGKVLFGSD 207 (346)
Q Consensus 184 ~ti~~~~peGwGLt~Dg~~LyvSd 207 (346)
.++.+.......-+|||+++.++.
T Consensus 139 ~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 139 STFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred eccccCcEEEEEEcCCCCEEEEEE
Confidence 999886556667899999998864
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.4 Score=49.41 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=94.7
Q ss_pred eEEEecCCEEEEEcCCCCC-----CeEEEEECCCCcEEEEec---cCC-CeeEEEEEEeCCEEEEEEee-----CCEEEE
Q 019103 109 GLLYAENDTLFESTGLYGR-----SSVRRVALETGKVEAINQ---MEG-SYFGEGLTLLGEKLFQVTWL-----QKTGFI 174 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~-----s~V~~iDl~Tgkv~~~~~---l~~-~~FgeGit~~g~~LY~ltw~-----~~~v~V 174 (346)
+.+.. ++.||+-.|.... +.+.+||+.+.+-..... +|. ...+..++..+++||+.--. -+.+++
T Consensus 170 ~~~~~-~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~ 248 (470)
T PLN02193 170 GIAQV-GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYS 248 (470)
T ss_pred EEEEE-CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEE
Confidence 44554 4789998885321 458899999987553222 222 12355677789999987432 368999
Q ss_pred EECCCCcEEE--EE---ecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcEEEEEEe-ccCCeeeeeceeeE
Q 019103 175 YDQNNLNKLE--EF---THQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIV-RYKGREVRNLNELE 242 (346)
Q Consensus 175 ~D~~tl~~i~--ti---~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kvi~~I~V-~~~G~pv~~lNELE 242 (346)
||+.+.+-.. .. +.+ ..+-+++..++.||+-=| .+.++.+|+.+.+-.. +.. +....+.... .+.
T Consensus 249 yD~~t~~W~~l~~~~~~P~~-R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~~-~~~ 325 (470)
T PLN02193 249 FDTTTNEWKLLTPVEEGPTP-RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGGA-GLE 325 (470)
T ss_pred EECCCCEEEEcCcCCCCCCC-ccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCCc-EEE
Confidence 9998754433 22 222 244456666788998543 3568999999877642 221 1110111111 244
Q ss_pred eeCCEEEEEecC----CCeEEEEeCCCCeE
Q 019103 243 FIKGEVWANVWQ----TDCIARISHEDGVV 268 (346)
Q Consensus 243 ~~~G~LyaNv~~----sn~I~vID~~TG~V 268 (346)
..+|+||+---. .+++.+.|+++.+-
T Consensus 326 ~~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 326 VVQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 567888864321 37899999999874
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.027 Score=56.34 Aligned_cols=192 Identities=14% Similarity=0.100 Sum_probs=126.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE--
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE-- 184 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~-- 184 (346)
-.|.|+ .++++|.. .+|+|++||..||+-++.+--. ++. -++-..++ ..+.--+++.+.|.|...-.-++
T Consensus 241 LCLqyd--~rviisGS--SDsTvrvWDv~tge~l~tlihHceaV--Lhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~r 313 (499)
T KOG0281|consen 241 LCLQYD--ERVIVSGS--SDSTVRVWDVNTGEPLNTLIHHCEAV--LHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLR 313 (499)
T ss_pred Eeeecc--ceEEEecC--CCceEEEEeccCCchhhHHhhhccee--EEEEEeCC-EEEEecCCceeEEEeccCchHHHHH
Confidence 456664 67888865 7899999999999876655221 111 22333333 33445778899999976543222
Q ss_pred EEecCCCcee-EEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeC
Q 019103 185 EFTHQMKDGW-GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISH 263 (346)
Q Consensus 185 ti~~~~peGw-GLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~ 263 (346)
.+=+|..+.. .+..|.+.+..+.|+.+|-++|..|.+-++++.-...|.+.- -.+|++.|.--.+|+|-.-|.
T Consensus 314 rVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl------QYr~rlvVSGSSDntIRlwdi 387 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL------QYRDRLVVSGSSDNTIRLWDI 387 (499)
T ss_pred HHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceeh------hccCeEEEecCCCceEEEEec
Confidence 1112312222 256778855556789999999999999999887766555432 236788888878999999999
Q ss_pred CCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeeccccccC
Q 019103 264 EDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKD 328 (346)
Q Consensus 264 ~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~~~~ 328 (346)
+.|+++..+. -- ++..-.|.||.+ =.|.|.+.+++--=.|.....|+.+
T Consensus 388 ~~G~cLRvLe---GH----------EeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~ 436 (499)
T KOG0281|consen 388 ECGACLRVLE---GH----------EELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAP 436 (499)
T ss_pred cccHHHHHHh---ch----------HHhhhheeecCc---eeeeccccceEEEEecccccCCccc
Confidence 9998754441 01 123355888743 3689999998877777654444433
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.42 Score=47.27 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=102.2
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCC---cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEEC---CCCc
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETG---KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ---NNLN 181 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg---kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~---~tl~ 181 (346)
.-+.++. +..|++. +++.++++|..+- ..+..++++ -++-|+.+.|+..|+++|.+ -.+++|. .+=.
T Consensus 90 ~Dv~vse-~yvyvad---~ssGL~IvDIS~P~sP~~~~~lnt~--gyaygv~vsGn~aYVadldd-gfLivdvsdpssP~ 162 (370)
T COG5276 90 ADVRVSE-EYVYVAD---WSSGLRIVDISTPDSPTLIGFLNTD--GYAYGVYVSGNYAYVADLDD-GFLIVDVSDPSSPQ 162 (370)
T ss_pred heeEecc-cEEEEEc---CCCceEEEeccCCCCcceeccccCC--ceEEEEEecCCEEEEeeccC-cEEEEECCCCCCce
Confidence 3445542 5678875 5788999997654 455555664 45778999999999999954 4455664 4556
Q ss_pred EEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCC---CCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeE
Q 019103 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQ---TLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCI 258 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~---T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I 258 (346)
+.++......+-|-++-.|++.|+++-++-|.++|.. .-+.+.+...+. -... .-.-+.+.|+.+. +.-+
T Consensus 163 lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~--g~~s----v~vsdnr~y~vvy-~egv 235 (370)
T COG5276 163 LAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP--GTYS----VSVSDNRAYLVVY-DEGV 235 (370)
T ss_pred eeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC--ceEE----EEecCCeeEEEEc-ccce
Confidence 7778876533446777779999999988888888854 444555544432 1111 2234678898886 5556
Q ss_pred EEEeCCCCe---EEEEEECCc
Q 019103 259 ARISHEDGV---VLGWVLLPN 276 (346)
Q Consensus 259 ~vID~~TG~---Vv~~I~l~~ 276 (346)
..+|..+-+ +.+..+.++
T Consensus 236 livd~s~~ssp~~~gsyet~~ 256 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYETSN 256 (370)
T ss_pred EEEecCCCCCceEeeccccCC
Confidence 677766554 666665543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.023 Score=56.94 Aligned_cols=171 Identities=14% Similarity=0.106 Sum_probs=116.7
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeC-CCEE
Q 019103 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATD-GKVL 203 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~D-g~~L 203 (346)
.+..|..||+.+.+......-..+ |-.||.++. ..+++.+-+.=+.+.+|.. .+.+|.-. .+=.|+++. ..-+
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~AH~G-~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~---p~~tilg~-s~~~gIdh~~~~~~ 161 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKAHEG-LVRGICVTQTSFFTVGDDKTVKQWKIDGP---PLHTILGK-SVYLGIDHHRKNSV 161 (433)
T ss_pred cCceEEEEehhhhhhhheeecccC-ceeeEEecccceEEecCCcceeeeeccCC---cceeeecc-cccccccccccccc
Confidence 456999999999887776655432 566777765 4456666666667777763 66666533 233355543 4456
Q ss_pred EEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhh
Q 019103 204 FGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVA 283 (346)
Q Consensus 204 yvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~ 283 (346)
|+|-| ..|.++|.+--..+.+..-|.+....-..| ++.-.|.+.+-.+..|++.|..++..+..+-+ .+
T Consensus 162 FaTcG-e~i~IWD~~R~~Pv~smswG~Dti~svkfN---pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~m------ 230 (433)
T KOG0268|consen 162 FATCG-EQIDIWDEQRDNPVSSMSWGADSISSVKFN---PVETSILASCASDRSIVLYDLRQASPLKKVIL-TM------ 230 (433)
T ss_pred ccccC-ceeeecccccCCccceeecCCCceeEEecC---CCcchheeeeccCCceEEEecccCCccceeee-ec------
Confidence 77655 479999998777777776665422221111 12235888888899999999999999888855 33
Q ss_pred ccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 284 AGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 284 ~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
-.|+|+|+| ....||+|--.-.||--+..
T Consensus 231 -------RTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 231 -------RTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred -------cccceecCc-cccceeeccccccceehhhh
Confidence 359999999 67788888888888865554
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.1 Score=53.86 Aligned_cols=179 Identities=9% Similarity=0.084 Sum_probs=116.7
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCee-EEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF-GEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~F-geGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
-+..|-.||+|+.+.+. +.-|.+||..+..+++.+.-...|- -.=+++.++++++.--.+..+-..|.++..+..++
T Consensus 72 ~s~~fR~DG~LlaaGD~--sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDE--SGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred eEEEeecCCeEEEccCC--cCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe
Confidence 37888889999988774 4599999977754444433222111 11234567888888888888888898888875455
Q ss_pred ecCCCcee----EEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEE
Q 019103 187 THQMKDGW----GLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI 261 (346)
Q Consensus 187 ~~~~peGw----GLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vI 261 (346)
..- +-+ .++|-.+++++|=| +.+|..+|+.+.. ..+---++|.|+... |-..+|.+.|... .|.|-|+
T Consensus 150 ~~h--tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--~~v~elnhg~pVe~v--l~lpsgs~iasAg-Gn~vkVW 222 (487)
T KOG0310|consen 150 SGH--TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--SRVVELNHGCPVESV--LALPSGSLIASAG-GNSVKVW 222 (487)
T ss_pred cCC--cceeEeeccccCCCeEEEecCCCceEEEEEeccCC--ceeEEecCCCceeeE--EEcCCCCEEEEcC-CCeEEEE
Confidence 421 111 35677889999987 8999999998874 222223467787633 5455778888774 8899999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
|.-+|...-.--. .. .-.--.+++..++.+|+-.
T Consensus 223 Dl~~G~qll~~~~-----~H-------~KtVTcL~l~s~~~rLlS~ 256 (487)
T KOG0310|consen 223 DLTTGGQLLTSMF-----NH-------NKTVTCLRLASDSTRLLSG 256 (487)
T ss_pred EecCCceehhhhh-----cc-------cceEEEEEeecCCceEeec
Confidence 9998765322211 01 1133456777776665533
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.03 Score=54.93 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=71.4
Q ss_pred eEEeeCCCEEEE-EC-CC----CeEEEEeCC-------CCcEEEEEEecc-CCeeeee---cee-eEe-eCCEEEEEecC
Q 019103 194 WGLATDGKVLFG-SD-GS----SMLYQIDPQ-------TLKVIRKDIVRY-KGREVRN---LNE-LEF-IKGEVWANVWQ 254 (346)
Q Consensus 194 wGLt~Dg~~Lyv-Sd-Gs----~~l~vIDp~-------T~kvi~~I~V~~-~G~pv~~---lNE-LE~-~~G~LyaNv~~ 254 (346)
+...++++++|+ || |. ..++.++.. ..++...+...+ +|.++.. -.| |.+ .+|.+|+....
T Consensus 25 l~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is~E~ 104 (326)
T PF13449_consen 25 LDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWISSEG 104 (326)
T ss_pred EEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEEeCC
Confidence 334434555554 88 44 234444322 223344455543 4666521 112 445 57899999999
Q ss_pred C------CeEEEEeCCCCeEEEEEECCchh-hhh-hhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 255 T------DCIARISHEDGVVLGWVLLPNLR-ERL-VAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 255 s------n~I~vID~~TG~Vv~~I~l~~l~-~~~-~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
. ..|.++|+. |+++..+.++.-. +.. ...+.+.+.-+.|+|++|++++||+.-+.
T Consensus 105 ~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 105 GRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred ccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 9 999999988 9999999664421 100 00223567799999999999988876443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.29 Score=50.22 Aligned_cols=192 Identities=14% Similarity=0.114 Sum_probs=124.0
Q ss_pred EEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE-EEEEEeC-CEEEEEEeeCCEEEEE
Q 019103 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG-EGLTLLG-EKLFQVTWLQKTGFIY 175 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg-eGit~~g-~~LY~ltw~~~~v~V~ 175 (346)
..||+..- .|+...++|.-++++. .+...-+.|..+|+.+-.+.-.....+ ...+.+. +.||.+--.++.+-++
T Consensus 299 ~~~h~~~V--~~ls~h~tgeYllsAs--~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiw 374 (506)
T KOG0289|consen 299 SRPHEEPV--TGLSLHPTGEYLLSAS--NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIW 374 (506)
T ss_pred cccccccc--eeeeeccCCcEEEEec--CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEE
Confidence 45675444 7999999998888877 566999999999998777755322101 1123333 5677776778999999
Q ss_pred ECCCCcEEEEEecC-CC-ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEEEEe
Q 019103 176 DQNNLNKLEEFTHQ-MK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANV 252 (346)
Q Consensus 176 D~~tl~~i~ti~~~-~p-eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~LyaNv 252 (346)
|.+....++.|+.. .| --..++.+|.||.++-.+..|..+|.+..+-.+++...+. ++ .|.++++. |...+.-
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~-~~---v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEK-KE---VNSLSFDQSGTYLGIA 450 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccc-cc---ceeEEEcCCCCeEEee
Confidence 99999999999863 11 3345777899998854445599999999998899988652 23 45677774 4322222
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
..+=.|+..+-.+-.=...-.+.++. ..-+|+.|....+.++.||
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~s-----------g~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHS-----------GLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcc-----------cccceeeecccceEEeecc
Confidence 22334666664443322222111111 1238899987666666554
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.062 Score=52.15 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=76.3
Q ss_pred CeEEEEeCCCCcEEEEEEeccC-CeeeeeceeeEeeC-------CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhh
Q 019103 210 SMLYQIDPQTLKVIRKDIVRYK-GREVRNLNELEFIK-------GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERL 281 (346)
Q Consensus 210 ~~l~vIDp~T~kvi~~I~V~~~-G~pv~~lNELE~~~-------G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~ 281 (346)
-+|.++|.+|.++++++..... -.+-.++|.|-.+. +++|++.-...-|+|+|.++|+--...+= .....
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~- 111 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPD- 111 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS-
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC-Cccee-
Confidence 5899999999999999999753 23456888877664 68999998888999999999997544422 11111
Q ss_pred hh------cc--CCCCceeeEEEEeC---CCCEEEEecCCCCcEEEEEEeeccc
Q 019103 282 VA------AG--YNGIDVLNGIAWDS---NRNRIFVTGKLWPKLYEINLREMKR 324 (346)
Q Consensus 282 ~~------~~--~~~~~vlNGIA~d~---~~~~LfVTGK~Wp~l~ev~l~~~~~ 324 (346)
+. .+ ....+-..|||.+| +++.||-.=-...++|.|...-++.
T Consensus 112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~ 165 (287)
T PF03022_consen 112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRD 165 (287)
T ss_dssp -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCS
T ss_pred ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhC
Confidence 00 00 01123378999987 7789998877788999998754443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.25 Score=47.42 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=121.6
Q ss_pred eEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019103 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
=+|++++- |+.+- .-+.|..+..+..|.+ =+++++.||-.+..+...+-++...=|.---...++..++---+++
T Consensus 91 Gkv~Rr~rgH~aqV--NtV~fNeesSVv~Sgs--fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGt 166 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQV--NTVRFNEESSVVASGS--FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGT 166 (307)
T ss_pred Ceeeeeccccccee--eEEEecCcceEEEecc--ccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCc
Confidence 35666664 43333 5667754446777866 5689999999998877766665432222111134556666667899
Q ss_pred EEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-----C-
Q 019103 172 GFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-----K- 245 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-----~- 245 (346)
+-.||...++..-.+--..-.-.-+++||+.+.++-=+++|..+|-+|+++++.-+=.. | +||. +
T Consensus 167 vRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhk--------n-~eykldc~l~q 237 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHK--------N-MEYKLDCCLNQ 237 (307)
T ss_pred EEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccc--------c-ceeeeeeeecc
Confidence 99999887765443211101344588999999998777899999999999865433211 1 2222 1
Q ss_pred -CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019103 246 -GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 246 -G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
....+..-.+..|..-|...++++..+.+.+.. ...-+++.|.-..|++++..-..
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v------------~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV------------IVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred cceeEEeccCCceEEEEEeccceeeeeeccCCce------------eEEeeecccCccceeEecCCcee
Confidence 123333334555666677777776666442211 13457888988899888665433
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.094 Score=56.50 Aligned_cols=193 Identities=15% Similarity=0.115 Sum_probs=126.7
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCE---EEEEEeeCCEEEEEECCCCcE-
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEK---LFQVTWLQKTGFIYDQNNLNK- 182 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~---LY~ltw~~~~v~V~D~~tl~~- 182 (346)
-.++|+|.+.|.-+.| -+..|.+||...+..+.... .|+-. -.+...++. +...-..++.+.++|..+...
T Consensus 109 i~ma~~~~g~LlAtgg--aD~~v~VWdi~~~~~th~fkG~gGvV--ssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc 184 (775)
T KOG0319|consen 109 ITMAFDPTGTLLATGG--ADGRVKVWDIKNGYCTHSFKGHGGVV--SSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC 184 (775)
T ss_pred EEEEEcCCCceEEecc--ccceEEEEEeeCCEEEEEecCCCceE--EEEEeCCccchhheeecCCCceEEEEEcccCchH
Confidence 6899999887776666 35699999999998877775 34321 112223333 335667799999999986554
Q ss_pred EEEEec--CCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC--CEEEEEecCCCeE
Q 019103 183 LEEFTH--QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK--GEVWANVWQTDCI 258 (346)
Q Consensus 183 i~ti~~--~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~--G~LyaNv~~sn~I 258 (346)
+.+..- ..--|.++.+|+..++..-.+..++++|..+.+..+++++.+.=+.+..+-| -.+ |..+.+...+..+
T Consensus 185 l~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~--~~~~~~~~~~TaG~~g~~ 262 (775)
T KOG0319|consen 185 LHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLRE--ELGGKGEYIITAGGSGVV 262 (775)
T ss_pred HHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEech--hcCCcceEEEEecCCceE
Confidence 333321 1346778899988887777789999999999998889988763122222211 012 3466677789999
Q ss_pred EEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 259 ARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 259 ~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
-.+|+++++++.+-.-++.. .--.+.+.....+.|.||..+-=.+|+.
T Consensus 263 ~~~d~es~~~~~~~~~~~~~-----------e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 263 QYWDSESGKCVYKQRQSDSE-----------EIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred EEEecccchhhhhhccCCch-----------hhhcceeccccCceEEEEccceEEEEEc
Confidence 99999999987666443311 1113344444556667886665555543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.3 Score=53.88 Aligned_cols=206 Identities=12% Similarity=0.159 Sum_probs=126.7
Q ss_pred EEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc-EEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEE
Q 019103 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D 176 (346)
+|-|-.. + +++.++++|..+.++| .+..|++|+..+-. .-..+.. ..-+..+++...++ |++.-.++.|.+|-
T Consensus 9 Ryaht~G-~-t~i~~d~~gefi~tcg--sdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~-f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 9 RYAHTGG-L-TLICYDPDGEFICTCG--SDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNH-FLTGSEQNTVLRYK 82 (933)
T ss_pred hhhccCc-e-EEEEEcCCCCEEEEec--CCCceEEeecCCcccCCchhhc-cCceeEEEeecccc-eEEeeccceEEEee
Confidence 3445323 4 7999999997666667 34589998766552 2122221 23345667776664 44455568888877
Q ss_pred CCCC---cEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEe
Q 019103 177 QNNL---NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (346)
Q Consensus 177 ~~tl---~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv 252 (346)
-..+ .++.+|..++ .-..++.+|+++...-.+-.|-+++..+...++...=.+ .|+. .|.|. +|.+.|..
T Consensus 83 fps~~~~~iL~Rftlp~-r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~--apVl---~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPI-RDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD--APVL---QLSYDPKGNFLAVS 156 (933)
T ss_pred CCCCCccceeeeeeccc-eEEEEecCCcEEEeecCceeEEEEeccccchheeecccC--Ccee---eeeEcCCCCEEEEE
Confidence 5544 3788888874 556777788877664334577788877655544333222 2443 36666 56777777
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec----------CCCCcEEEEEEe
Q 019103 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG----------KLWPKLYEINLR 320 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG----------K~Wp~l~ev~l~ 320 (346)
--+..|.++|..+|.+..+++- +.+... .....--+=.||.|++.+|.+-+ +.|-..|..+..
T Consensus 157 s~dG~v~iw~~~~~~~~~tl~~--v~k~n~---~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~ 229 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTLTG--VDKDNE---FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK 229 (933)
T ss_pred ecCceEEEEEcccchhhhhccc--CCcccc---ccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc
Confidence 7788999999999999888742 222110 01112345579999977666543 456666655543
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.39 Score=47.80 Aligned_cols=114 Identities=14% Similarity=0.124 Sum_probs=70.1
Q ss_pred eEEEecCCEEEEEcCCCC---------CCeEEEEECCCCcEEEEec-cCCCeeEEEEEE-eCCEEEEEEee---------
Q 019103 109 GLLYAENDTLFESTGLYG---------RSSVRRVALETGKVEAINQ-MEGSYFGEGLTL-LGEKLFQVTWL--------- 168 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg---------~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~-~g~~LY~ltw~--------- 168 (346)
+++.. ++.||+-.|..+ .+.+.+||+.+.+-..... .+...++..... .+++||+.--.
T Consensus 79 ~~v~~-~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~ 157 (376)
T PRK14131 79 VAAFI-DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYF 157 (376)
T ss_pred eEEEE-CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHH
Confidence 34443 589999887532 1468899999987554332 233344544444 78999998332
Q ss_pred ------------------------------CCEEEEEECCCC--cEEEEEecCCCceeEEeeCCCEEEEECC-------C
Q 019103 169 ------------------------------QKTGFIYDQNNL--NKLEEFTHQMKDGWGLATDGKVLFGSDG-------S 209 (346)
Q Consensus 169 ------------------------------~~~v~V~D~~tl--~~i~ti~~~~peGwGLt~Dg~~LyvSdG-------s 209 (346)
.+.+.+||+.+. +.+..++.....+-++...+++||+--| +
T Consensus 158 ~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~ 237 (376)
T PRK14131 158 EDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRT 237 (376)
T ss_pred hhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCC
Confidence 367999998764 4444555422345566666778887543 2
Q ss_pred CeEE--EEeCCCCcEE
Q 019103 210 SMLY--QIDPQTLKVI 223 (346)
Q Consensus 210 ~~l~--vIDp~T~kvi 223 (346)
..++ .+|+++.+-.
T Consensus 238 ~~~~~~~~~~~~~~W~ 253 (376)
T PRK14131 238 DAVKQGKFTGNNLKWQ 253 (376)
T ss_pred hhheEEEecCCCccee
Confidence 3344 4577776654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.19 Score=50.59 Aligned_cols=209 Identities=9% Similarity=0.012 Sum_probs=134.8
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCEEEEE-EeeCCEEEEEECCCC
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQV-TWLQKTGFIYDQNNL 180 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~l-tw~~~~v~V~D~~tl 180 (346)
...|...++++|.+..|.+.+ ++..+-+||++||++...++ .-.. -+|+++...+=|+- .-.++.|--+|....
T Consensus 150 HlgWVr~vavdP~n~wf~tgs--~DrtikIwDlatg~LkltltGhi~~--vr~vavS~rHpYlFs~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGS--ADRTIKIWDLATGQLKLTLTGHIET--VRGVAVSKRHPYLFSAGEDKQVKCWDLEYN 225 (460)
T ss_pred ccceEEEEeeCCCceeEEecC--CCceeEEEEcccCeEEEeecchhhe--eeeeeecccCceEEEecCCCeeEEEechhh
Confidence 367889999999888888766 67799999999999888775 3222 47888888766654 456677888999999
Q ss_pred cEEEEEecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeE
Q 019103 181 NKLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCI 258 (346)
Q Consensus 181 ~~i~ti~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I 258 (346)
+++..+---+ -....+.|--+.|+..-.+..+.++|-.|...+..+.=.. .|+..+ .....|+.||-.. .+.+|
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~--~~V~~V-~~~~~dpqvit~S-~D~tv 301 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT--NPVASV-MCQPTDPQVITGS-HDSTV 301 (460)
T ss_pred hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC--CcceeE-EeecCCCceEEec-CCceE
Confidence 9988875322 2333344545566655568899999998876654443222 243321 1123377777544 57788
Q ss_pred EEEeCCCCeEEEEEECCch-------hh----------hhhh-ccCCC--------CceeeEEEEeCCCCEEEEecCCCC
Q 019103 259 ARISHEDGVVLGWVLLPNL-------RE----------RLVA-AGYNG--------IDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 259 ~vID~~TG~Vv~~I~l~~l-------~~----------~~~~-~~~~~--------~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
-.=|...|+-..++--..- -| ...+ ...|. +-.-++-++.-..+-.+|+|..-.
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng 381 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG 381 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCce
Confidence 8888888886655521100 00 0000 00011 112255677777788899998888
Q ss_pred cEEEEEE
Q 019103 313 KLYEINL 319 (346)
Q Consensus 313 ~l~ev~l 319 (346)
.|.-=+-
T Consensus 382 ~~~fwdw 388 (460)
T KOG0285|consen 382 SIMFWDW 388 (460)
T ss_pred EEEEEec
Confidence 8876554
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.088 Score=53.14 Aligned_cols=151 Identities=14% Similarity=0.129 Sum_probs=104.6
Q ss_pred EEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCe-------eEEEEEEe-C--CEEEEEEeeCCEEEEEECC-CCcEEEE
Q 019103 118 LFESTGLYGRSSVRRVALETGKVEAINQ-MEGSY-------FGEGLTLL-G--EKLFQVTWLQKTGFIYDQN-NLNKLEE 185 (346)
Q Consensus 118 LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~-------FgeGit~~-g--~~LY~ltw~~~~v~V~D~~-tl~~i~t 185 (346)
++-..|....+.+-+||+.+.+-+-+-+ +++.. +-.++... + ..-|+.--+-+.+-+||++ .++.+.+
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 3333454434789999999886544442 44332 22333332 2 4566666677999999987 5678999
Q ss_pred EecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-EEEEEecCCCeEEEEe
Q 019103 186 FTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQTDCIARIS 262 (346)
Q Consensus 186 i~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G-~LyaNv~~sn~I~vID 262 (346)
|++. .---.|++|+|+.+|+.|-..+|..+|..++++...--=+..|.+.+ +-...+ .+.|.+..+..|-+-|
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs----ih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS----IHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce----EEEcCCCceEEeeccceeEEEee
Confidence 9974 12556799999999999999999999999988765422233344433 555554 7888998888999999
Q ss_pred CCCCeEEEEE
Q 019103 263 HEDGVVLGWV 272 (346)
Q Consensus 263 ~~TG~Vv~~I 272 (346)
.+|.+.+..+
T Consensus 319 ~ktrkll~kv 328 (412)
T KOG3881|consen 319 IKTRKLLHKV 328 (412)
T ss_pred cccchhhhhh
Confidence 9997766554
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.1 Score=53.89 Aligned_cols=108 Identities=11% Similarity=0.101 Sum_probs=72.6
Q ss_pred eEEEecCCEEEEEcCCCCC-CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE--EEE
Q 019103 109 GLLYAENDTLFESTGLYGR-SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK--LEE 185 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~-s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~--i~t 185 (346)
+.+.. +|+||+..|..+. +.+..||+++++-...-+++...++.+++..+++||+.- +.+.+||+++-+- +..
T Consensus 357 ~~~~~-~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~ 432 (480)
T PHA02790 357 AVASI-NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDD 432 (480)
T ss_pred EEEEE-CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCC
Confidence 34443 6899999886543 568899999998766666665545667788899999975 3467888875544 344
Q ss_pred EecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCc
Q 019103 186 FTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLK 221 (346)
Q Consensus 186 i~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~k 221 (346)
.+.+ ..+-+++.-++++|+.=| .+.+...||++.+
T Consensus 433 m~~~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 433 PIYP-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCC-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 4443 345566666778888654 2456666766654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.46 Score=50.30 Aligned_cols=142 Identities=11% Similarity=0.001 Sum_probs=102.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEE
Q 019103 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLF 204 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~Ly 204 (346)
+.+.|+.||..+++.+..-..+..-=--++... ++.+++.--.+.++.|-|..+++-+..+.....-+.-++-++..+.
T Consensus 226 ~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~ 305 (537)
T KOG0274|consen 226 DDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLV 305 (537)
T ss_pred CCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEe
Confidence 568999999999998887444321112335554 3555556566899999999999999999853234444555555555
Q ss_pred EECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Q 019103 205 GSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 205 vSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~ 273 (346)
..-.+++|.++|.++.+.++.+.. ++.+ ++++.+.++++++... +..|.|.|+.+++++.++.
T Consensus 306 sgs~D~tVkVW~v~n~~~l~l~~~--h~~~---V~~v~~~~~~lvsgs~-d~~v~VW~~~~~~cl~sl~ 368 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGACLNLLRG--HTGP---VNCVQLDEPLLVSGSY-DGTVKVWDPRTGKCLKSLS 368 (537)
T ss_pred eccCCceEEEEeccCcceEEEecc--cccc---EEEEEecCCEEEEEec-CceEEEEEhhhceeeeeec
Confidence 434589999999999999888874 2224 4577777777877765 6699999999999988873
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.28 Score=48.24 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=34.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcE---EEEe-cc--CCCeeEEEEEEeC-----CEEEEEEe
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKV---EAIN-QM--EGSYFGEGLTLLG-----EKLFQVTW 167 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv---~~~~-~l--~~~~FgeGit~~g-----~~LY~ltw 167 (346)
.+|++.|||+||++.= . ..|.+++ ..|.. +..+ .+ ....=-.|++++. +.||+..-
T Consensus 5 ~~~a~~pdG~l~v~e~-~--G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAER-S--GRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp EEEEEETTSCEEEEET-T--TEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred eEEEEeCCCcEEEEeC-C--ceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 4899999999999843 3 4999999 55554 2222 11 1111135677776 78998744
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.16 Score=51.78 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=101.0
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeec
Q 019103 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL 238 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~l 238 (346)
...++..-.++++-.+|..+-..+.+++.+ .-.-..+++||..|..+-.++.+.+||..|+++......... +--...
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~-k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGF-KCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccc-cccccc
Confidence 556777888999999999999999999986 224455788999999997799999999999999887776431 111112
Q ss_pred eeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 239 NELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 239 NELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+..-+- +|...|+=-....|.+=+..||++...+..+... .-.+.++|+|-|.-|.-++|+
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~-----------~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN-----------AAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC-----------cceEEEEEcCCCchhhcccCC
Confidence 333333 3433344445677999999999999888663321 145789999999888777663
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.42 Score=48.37 Aligned_cols=205 Identities=16% Similarity=0.207 Sum_probs=119.9
Q ss_pred EEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCC--eeEEEEEEeC-CEEE--------
Q 019103 97 NEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAIN-QMEGS--YFGEGLTLLG-EKLF-------- 163 (346)
Q Consensus 97 ~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~--~FgeGit~~g-~~LY-------- 163 (346)
++-|...+| .||+|...+ .||++..=+ .|.+++++.|+..... ..++. .|.-+++++. +.+|
T Consensus 109 ~~e~~CGRP--LGl~f~~~ggdL~VaDAYl---GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~ 183 (376)
T KOG1520|consen 109 ETEPLCGRP--LGIRFDKKGGDLYVADAYL---GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKY 183 (376)
T ss_pred ecccccCCc--ceEEeccCCCeEEEEecce---eeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEecccccc
Confidence 333445778 599999666 899998733 5999999988732222 12222 2444455532 3333
Q ss_pred -------EE--EeeCCEEEEEECCCCcEEEEEe-cCCCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCC
Q 019103 164 -------QV--TWLQKTGFIYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 164 -------~l--tw~~~~v~V~D~~tl~~i~ti~-~~~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
.+ .-.+++++.||+.|....-=.+ ..-|.|.+|++|+..+.+++. ..+|.-+=.+--++ .+.+|=.+|
T Consensus 184 ~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~-gt~EvFa~~ 262 (376)
T KOG1520|consen 184 DRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKA-GTSEVFAEG 262 (376)
T ss_pred chhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCcc-CchhhHhhc
Confidence 22 2246889999987653311111 113799999999999999984 44554433221111 111111111
Q ss_pred eeeeeceeeEee-CCEEEEEe---------------cC----------------------CCeEEEEeCCCCeEEEEEEC
Q 019103 233 REVRNLNELEFI-KGEVWANV---------------WQ----------------------TDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 233 ~pv~~lNELE~~-~G~LyaNv---------------~~----------------------sn~I~vID~~TG~Vv~~I~l 274 (346)
-|=..-| +-.. +|..||.. |- -+.+++..-++|+|++.+.-
T Consensus 263 LPG~PDN-IR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD 341 (376)
T KOG1520|consen 263 LPGYPDN-IRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHD 341 (376)
T ss_pred CCCCCcc-eeECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEec
Confidence 1100011 1122 45566655 21 11566677799999999954
Q ss_pred CchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 275 PNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 275 ~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.+.+ .+-..+...+..++||+.-=.||.+..++|
T Consensus 342 ~~g~-----------~~~~~sev~E~dg~LyiGS~~~p~i~~lkl 375 (376)
T KOG1520|consen 342 KEGK-----------VITLVSEVGEHDGHLYIGSLFNPYIARLKL 375 (376)
T ss_pred CCCC-----------ceEEEEEEeecCCeEEEcccCcceeEEEec
Confidence 2221 244667788778899999999999999886
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.094 Score=53.42 Aligned_cols=181 Identities=11% Similarity=0.029 Sum_probs=126.4
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
--++|.|+|+.+.++. =+++=+.||+.|++.+..+. -....|......+|. |...--.+...-|.|..|++.+-.+
T Consensus 265 s~VafHPsG~~L~Tas--fD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 265 SRVAFHPSGKFLGTAS--FDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred eeeeecCCCceeeecc--cccchhhcccccchhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEe
Confidence 4678999999887766 45799999999997654442 345666654444443 5555567888999999999998887
Q ss_pred ecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCC
Q 019103 187 THQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 187 ~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~ 264 (346)
.--. -.+..++|+|..|-..-++|++-|+|.+--+.+-+|+...+ -|... -.+...|+-.|+.-+++++-+=.+.
T Consensus 342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~V-k~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQV-KYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhhe-EecccCCeEEEEcccCcceeeecCC
Confidence 6422 25666788898888877899999999988787777776432 22111 0223357888999899999999999
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
++..+..+ .+ + .+.| -+++++++++-+.-+
T Consensus 419 ~~~~~ksL-----aG----H---e~kV-~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 419 TWSPLKSL-----AG----H---EGKV-ISLDISPDSQAIATS 448 (459)
T ss_pred Ccccchhh-----cC----C---ccce-EEEEeccCCceEEEe
Confidence 88866555 11 1 1223 358888888755544
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.26 Score=50.19 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=71.2
Q ss_pred eEEEecCCE-EEEEcCCCCCCeEEEEECCC-CcEEEEeccC-CCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEE
Q 019103 109 GLLYAENDT-LFESTGLYGRSSVRRVALET-GKVEAINQME-GSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKL 183 (346)
Q Consensus 109 GL~~~~d~~-LyeStGlyg~s~V~~iDl~T-gkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i 183 (346)
...++|||+ |+.++...|...|.+++++. +.....+... .....-..+++|++|+.+.-. ...++++|.++.+..
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 568899984 54444334667888888763 3323333322 222223356778887765433 357999999888653
Q ss_pred EEEecC--CCceeEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEE
Q 019103 184 EEFTHQ--MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVI 223 (346)
Q Consensus 184 ~ti~~~--~peGwGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi 223 (346)
.+..+ ..+....++||+.|+. ++ +...|+.+|..+.+..
T Consensus 365 -~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 365 -QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred -EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 33221 2244567899998865 43 4678999999887653
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=1.3 Score=44.72 Aligned_cols=163 Identities=11% Similarity=0.121 Sum_probs=105.3
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECC
Q 019103 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~ 178 (346)
-|-...| -+..+|+.+|..+.| |++.-..||..+|.......= ....-..+++. .+.+.+.--.+++++|++..
T Consensus 62 ~H~~svF--avsl~P~~~l~aTGG--gDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 62 KHTDSVF--AVSLHPNNNLVATGG--GDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred hcCCceE--EEEeCCCCceEEecC--CCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcc
Confidence 4666676 556667778888888 888999999999996666542 22222222222 23344444679999999999
Q ss_pred CCcEEEEEecCCCce--eEE-eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc-CCeeeeeceeeEeeCCEEEEEecC
Q 019103 179 NLNKLEEFTHQMKDG--WGL-ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKGEVWANVWQ 254 (346)
Q Consensus 179 tl~~i~ti~~~~peG--wGL-t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~-~G~pv~~lNELE~~~G~LyaNv~~ 254 (346)
|.....++..+. ++ |=- .|-+..|..-..+..|+++...+... .+|-. ++.|.. ..|+-. +|+..+..+.
T Consensus 137 tg~~~~~~~~e~-~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~---~kv~~Gh~~~ct-~G~f~p-dGKr~~tgy~ 210 (399)
T KOG0296|consen 137 TGGEQWKLDQEV-EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL---CKVMSGHNSPCT-CGEFIP-DGKRILTGYD 210 (399)
T ss_pred cCceEEEeeccc-CceEEEEecccccEEEeecCCCcEEEEECCCcce---eeEecCCCCCcc-cccccC-CCceEEEEec
Confidence 999999997542 22 222 34456666644566787777665433 33321 223332 123322 4665566666
Q ss_pred CCeEEEEeCCCCeEEEEEE
Q 019103 255 TDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~ 273 (346)
+.+|.+-||+||.++.++.
T Consensus 211 dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred CceEEEEecCCCceeEEec
Confidence 8899999999999999996
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.041 Score=55.49 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=87.2
Q ss_pred CcceeEEEecC--CEEEEEcCCCCCCeEEEEECCCCc-EEEEeccCCC-eeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 105 AFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETGK-VEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 105 ~FTqGL~~~~d--~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l~~~-~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
-|.+++.|.++ ..-|++...|+ +|+.||+..++ -+..+++... .-..|+++.++.||+.|.. +.+..||..++
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~h--qvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~ 279 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYH--QVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGG 279 (412)
T ss_pred eeeccceecCCCCCceEEEEecce--eEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc-chhheecccCc
Confidence 35577778754 34444444345 99999999864 5566665433 3457788889999999865 78899999999
Q ss_pred cEEEE-EecCCCceeEEe-eCCCEEEEECC-CCeEEEEeCCCCcEEEEEEecc
Q 019103 181 NKLEE-FTHQMKDGWGLA-TDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 181 ~~i~t-i~~~~peGwGLt-~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~ 230 (346)
++++. +.--.+.--.+. +++..+..|-| +..|.+.|.+|.+.+.++-|+.
T Consensus 280 kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 280 KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 99988 442111222343 45556777778 8899999999999888888865
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.087 Score=52.45 Aligned_cols=125 Identities=14% Similarity=0.168 Sum_probs=93.3
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEE-EEEE--eCCEEEEEEeeCCEEEEEECCC
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGE-GLTL--LGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fge-Git~--~g~~LY~ltw~~~~v~V~D~~t 179 (346)
...|..-..|++||.-.+|+. .+.+|.+|+.+|++-+...+.++..... .+-+ .+-.-+++-.++|.+++.+. .
T Consensus 347 HsSyvn~a~ft~dG~~iisaS--sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-q 423 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISAS--SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-Q 423 (508)
T ss_pred ccccccceEEcCCCCeEEEec--CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-c
Confidence 467778888999997666666 4559999999999877776543322111 1112 23345556667899999985 5
Q ss_pred CcEEEEEecCCCceeE-----EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc
Q 019103 180 LNKLEEFTHQMKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 180 l~~i~ti~~~~peGwG-----Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
++++++|.-+..||=. |+|-|+|+|..-.+..+|-+...++++.++..|.+
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence 8899999887445533 78999999998778999999999999999999976
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.012 Score=60.59 Aligned_cols=135 Identities=21% Similarity=0.167 Sum_probs=93.5
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCE
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~ 171 (346)
=+||++|.+...+. .-+.|-++|+=|+|+. +++++++|+...+-.+..+.-+..+=---++++. +..+.+--.+|.
T Consensus 332 ~kvvqeYd~hLg~i-~~i~F~~~g~rFissS--Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 332 GKVVQEYDRHLGAI-LDITFVDEGRRFISSS--DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY 408 (503)
T ss_pred hHHHHHHHhhhhhe-eeeEEccCCceEeeec--cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence 35889998877776 7888888899999988 7789999999988654444222110001134432 345555566777
Q ss_pred EEEEECCC---CcEEEEEecCCCceeE----EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc
Q 019103 172 GFIYDQNN---LNKLEEFTHQMKDGWG----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 172 v~V~D~~t---l~~i~ti~~~~peGwG----Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
+.+|.+.. +...++|.--+-+|++ ++|||..|.--|+++.++++|-+|-+++++++..+
T Consensus 409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~ 474 (503)
T KOG0282|consen 409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD 474 (503)
T ss_pred EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC
Confidence 77777542 2333444421223443 68999999999999999999999999999998874
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.1 Score=52.92 Aligned_cols=154 Identities=12% Similarity=0.057 Sum_probs=98.8
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
-.+.|+|+|.-+++.+ |+.+++.||+.|..-....+=. ..+-.-++... ++..+.--+++.|..+|+++++++++-
T Consensus 119 l~~~fsp~g~~l~tGs--GD~TvR~WD~~TeTp~~t~KgH-~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~ 195 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGS--GDTTVRLWDLDTETPLFTCKGH-KNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRA 195 (480)
T ss_pred EEEEecCCCceEEecC--CCceEEeeccCCCCcceeecCC-ccEEEEEEECCCcchhhccccCCeEEEecCCCCCccccc
Confidence 4678999998777866 8999999999998755554432 22333333332 234445578999999999999988753
Q ss_pred ecCC-C-------ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCe
Q 019103 187 THQM-K-------DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDC 257 (346)
Q Consensus 187 ~~~~-p-------eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~ 257 (346)
=-+. + |..-+.++..+|--+-.++.+.++|+.-.+.+..+.-.. .++. -+-+- +|.||-.. ++.+
T Consensus 196 l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT--~~VT---CvrwGG~gliySgS-~Drt 269 (480)
T KOG0271|consen 196 LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHT--ASVT---CVRWGGEGLIYSGS-QDRT 269 (480)
T ss_pred ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCc--cceE---EEEEcCCceEEecC-CCce
Confidence 2221 1 222345556655445579999999988777665544322 2322 12233 45677654 5778
Q ss_pred EEEEeCCCCeEEE
Q 019103 258 IARISHEDGVVLG 270 (346)
Q Consensus 258 I~vID~~TG~Vv~ 270 (346)
|-+-+...|+...
T Consensus 270 Ikvw~a~dG~~~r 282 (480)
T KOG0271|consen 270 IKVWRALDGKLCR 282 (480)
T ss_pred EEEEEccchhHHH
Confidence 8888888887653
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.27 Score=44.68 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=86.8
Q ss_pred CCCCeEEEEECCCCcEEEEeccCCC--eeEEEEEEeCCEEEEEE-eeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCC
Q 019103 125 YGRSSVRRVALETGKVEAINQMEGS--YFGEGLTLLGEKLFQVT-WLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGK 201 (346)
Q Consensus 125 yg~s~V~~iDl~Tgkv~~~~~l~~~--~FgeGit~~g~~LY~lt-w~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~ 201 (346)
||+..|..+|..... ...+.+... .-...-.+.++++.++. ...+++.+||.+ .+.+.+++.......-.+|+|+
T Consensus 36 ~~~~~l~~~~~~~~~-~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 36 YGEFELFYLNEKNIP-VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGR 113 (194)
T ss_pred EeeEEEEEEecCCCc-cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCC
Confidence 455677777776554 455555432 22222344567777764 356789999986 8888888764334566789999
Q ss_pred EEEEEC-C--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEec------CCCeEEEEeCCCCeEEEE
Q 019103 202 VLFGSD-G--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVW------QTDCIARISHEDGVVLGW 271 (346)
Q Consensus 202 ~LyvSd-G--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~------~sn~I~vID~~TG~Vv~~ 271 (346)
.|.++. | ...|.++|.++.+.+.+..-.. ...+++. +|+-+++.- .+|.+-+-+- +|+.+..
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-------~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~ 185 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-------ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK 185 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccccCc-------EEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence 998865 3 5689999999888876655422 2346776 565443321 1333444443 4555555
Q ss_pred EEC
Q 019103 272 VLL 274 (346)
Q Consensus 272 I~l 274 (346)
.++
T Consensus 186 ~~~ 188 (194)
T PF08662_consen 186 KPF 188 (194)
T ss_pred cch
Confidence 544
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.11 Score=52.16 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=103.5
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCC---cEEEEeccCC------------CeeEEEEEEeC
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG---KVEAINQMEG------------SYFGEGLTLLG 159 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg---kv~~~~~l~~------------~~FgeGit~~g 159 (346)
-++++|- +.-|..-+.+.+||+|+-|++ .+..|++|=.+|+ .+.+.+..+- ..|..+=.-.+
T Consensus 227 cv~t~~~-h~ewvr~v~v~~DGti~As~s--~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 227 CVKTFPG-HSEWVRMVRVNQDGTIIASCS--NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred eEEeccC-chHhEEEEEecCCeeEEEecC--CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 3566653 345888999999999999998 7789999999998 3333333321 11111111113
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeee
Q 019103 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~ 237 (346)
..+...--+++++-+.|..|+..+-++-- . .--|.+++|-|++|+-.-.+.+|.++|.++.+-.+++.... ++
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~-----hf 378 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE-----HF 378 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc-----ce
Confidence 34555555679999999999999999863 2 22456688889988775557899999999999888887643 35
Q ss_pred ceeeEeeCCEEEEE
Q 019103 238 LNELEFIKGEVWAN 251 (346)
Q Consensus 238 lNELE~~~G~LyaN 251 (346)
.+-|++.+...||.
T Consensus 379 vt~lDfh~~~p~Vv 392 (406)
T KOG0295|consen 379 VTSLDFHKTAPYVV 392 (406)
T ss_pred eEEEecCCCCceEE
Confidence 56677776666654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.23 Score=51.37 Aligned_cols=148 Identities=10% Similarity=0.084 Sum_probs=96.2
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCee-------EEEEEE-eCCEEEEEEeeCCEEEEEECC
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYF-------GEGLTL-LGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~F-------geGit~-~g~~LY~ltw~~~~v~V~D~~ 178 (346)
.+|.+.|.|.|+.|+. .+.++.+|....+.-...+ ...+..+ |-+..- ..+......-.+++|.++|..
T Consensus 363 ~alk~n~tg~LLaS~S--dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 363 NALKWNPTGSLLASCS--DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred EEEEECCCCceEEEec--CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 5788888888888887 6679999885443221111 1111111 100111 113344556678999999999
Q ss_pred CCcEEEEE-ecCCC-ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCC
Q 019103 179 NLNKLEEF-THQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQT 255 (346)
Q Consensus 179 tl~~i~ti-~~~~p-eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s 255 (346)
.+..+.+| .++.| +-..++|||++|-.-+-+..|++++.++.++.+...=+. .++||-|- +|.......-.
T Consensus 441 ~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~------~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 441 SGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG------GIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC------eEEEEEEcCCCCEEEEEecC
Confidence 99999999 55422 566788999977666668899999999999987654432 25677665 44433444457
Q ss_pred CeEEEEeC
Q 019103 256 DCIARISH 263 (346)
Q Consensus 256 n~I~vID~ 263 (346)
+.+.++|.
T Consensus 515 ~~vcvldl 522 (524)
T KOG0273|consen 515 GSVCVLDL 522 (524)
T ss_pred CCceEEEe
Confidence 77888775
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.16 Score=50.24 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=86.6
Q ss_pred CcceeEEEecC---CEEEEEcCCCCCCeEEEEECCCCcEEEEe-----ccCC--CeeEEEEEEeCCEEEEEEeeC-----
Q 019103 105 AFTQGLLYAEN---DTLFESTGLYGRSSVRRVALETGKVEAIN-----QMEG--SYFGEGLTLLGEKLFQVTWLQ----- 169 (346)
Q Consensus 105 ~FTqGL~~~~d---~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-----~l~~--~~FgeGit~~g~~LY~ltw~~----- 169 (346)
+--.||++..+ +.||.+.- .+.+|.++|-.=.++.-.- .+|. .||+ |...+++|||.=-+.
T Consensus 138 avYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFn--Iqnig~~lyVtYA~qd~~~~ 213 (336)
T TIGR03118 138 NVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFN--VQNLGGTLYVTYAQQDADRN 213 (336)
T ss_pred ceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCCccCCCCCCCCCCcc--eEEECCeEEEEEEecCCccc
Confidence 33389999733 48999988 4669999987755542110 1333 4565 678899999874332
Q ss_pred --------CEEEEEECCCCcEEEEEecC--CCceeEEe--eC-----CCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccC
Q 019103 170 --------KTGFIYDQNNLNKLEEFTHQ--MKDGWGLA--TD-----GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 170 --------~~v~V~D~~tl~~i~ti~~~--~peGwGLt--~D-----g~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
+-|-|||+ +++.+.++..+ ....|||+ |- ...|.|.| |+.+|-.+|+.+++-+..+.= ..
T Consensus 214 d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~-~~ 291 (336)
T TIGR03118 214 DEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD-PD 291 (336)
T ss_pred ccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC-CC
Confidence 36778995 68999999764 34556654 42 35666767 999999999999998877654 24
Q ss_pred Ceeee
Q 019103 232 GREVR 236 (346)
Q Consensus 232 G~pv~ 236 (346)
|+|+.
T Consensus 292 G~pi~ 296 (336)
T TIGR03118 292 NHPVK 296 (336)
T ss_pred CCeEE
Confidence 56653
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.29 Score=47.91 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=65.7
Q ss_pred EEEEEeeC-CEEEEEECCCCcEEEEEecC--CCceeE------EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCC
Q 019103 162 LFQVTWLQ-KTGFIYDQNNLNKLEEFTHQ--MKDGWG------LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 162 LY~ltw~~-~~v~V~D~~tl~~i~ti~~~--~peGwG------Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
|+..+-.. +.+.+||.++++++++++.+ .|.|++ ...|..+|+.+.....|..+|. .+++++++.+...+
T Consensus 58 L~f~n~~~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~~Dsi~l~~~~~~~~l~~~n~-~G~~~~~~~~~~~~ 136 (333)
T PF13970_consen 58 LYFLNNYKSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQNLDSIFLFNSYAFPKLFLFNS-QGEVLKKIDLEEED 136 (333)
T ss_dssp EEEEE-ST--EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEESSSTTSEEEEGGGTEEEEE-T-T--EEEEEE---TT
T ss_pred EEEEcCCCcceEEEEECCCCceeeeeeeeeECCCCccccccceEcCCceEEEecCCcceEEEEcC-CCeEEEEEecccCc
Confidence 44566665 89999999999999999874 466653 3446667776644678999995 58999999996632
Q ss_pred e---e--ee-ecee-eEeeCCEEEEEec-----------CCCeEEEEeCCCCeEEEEEEC
Q 019103 233 R---E--VR-NLNE-LEFIKGEVWANVW-----------QTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 233 ~---p--v~-~lNE-LE~~~G~LyaNv~-----------~sn~I~vID~~TG~Vv~~I~l 274 (346)
. + +. ..|+ +...++.+|.... ....++.||++++++ .++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~-~~~~l 195 (333)
T PF13970_consen 137 LEFEPSEFPSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTKKV-KWLPL 195 (333)
T ss_dssp S-------BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT--E-EEEEE
T ss_pred ccccccccccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCCeE-EEEeC
Confidence 1 1 11 1233 3334677787653 123688999999998 66764
|
|
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.31 Score=49.79 Aligned_cols=198 Identities=16% Similarity=0.231 Sum_probs=106.1
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECC--CCcEEEEe-----ccC-----CCee------EEE
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALE--TGKVEAIN-----QME-----GSYF------GEG 154 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~--Tgkv~~~~-----~l~-----~~~F------geG 154 (346)
-.|+.-+|-...-||.=|.|+|||+||+++|..++-. ...|.. .||+++.- ..+ .+.| ..|
T Consensus 165 ~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~-~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qG 243 (399)
T COG2133 165 KVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPA-LAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQG 243 (399)
T ss_pred cEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcc-cccCccccccceeeeccCcccccCCCCCCcceEEeccCCccc
Confidence 5567777765578889999999999999999642211 222222 24444222 111 1111 124
Q ss_pred EEEeC--CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEE---ECCCCeEEEEeCCCCcEEEEEEec
Q 019103 155 LTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG---SDGSSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 155 it~~g--~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~Lyv---SdGs~~l~vIDp~T~kvi~~I~V~ 229 (346)
++.+. ++||.+......+.. ...+..+..+.-+||=+++-|+...- -++.-....+.| .+..-..+.
T Consensus 244 l~w~P~tg~Lw~~e~g~d~~~~-----~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p-~~~~~~h~A-- 315 (399)
T COG2133 244 LAWHPVTGALWTTEHGPDALRG-----PDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQP-VYTWAPHIA-- 315 (399)
T ss_pred eeecCCCCcEEEEecCCCcccC-----cccccccccCCccCCceeccCcccCccccCCCcccccccCC-ceeeccccc--
Confidence 44443 466666544433311 22334444445577777764432211 111111111111 111111110
Q ss_pred cCCeeeeeceeeEeeC--------CEEEEEecCCCeEEEEeCCCC-eE--EEEEECCchhhhhhhccCCCCceeeEEEEe
Q 019103 230 YKGREVRNLNELEFIK--------GEVWANVWQTDCIARISHEDG-VV--LGWVLLPNLRERLVAAGYNGIDVLNGIAWD 298 (346)
Q Consensus 230 ~~G~pv~~lNELE~~~--------G~LyaNv~~sn~I~vID~~TG-~V--v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d 298 (346)
| --|.|.+ |.+|+.-..+-.+.+.+++-+ +| .+.+.- +.. .-+-+++..
T Consensus 316 ----p----sGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~-d~~-----------gR~~dV~v~ 375 (399)
T COG2133 316 ----P----SGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSG-DLG-----------GRPRDVAVA 375 (399)
T ss_pred ----c----ceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEec-CCC-----------CcccceEEC
Confidence 1 1133443 578887766667888888888 33 344432 111 246789999
Q ss_pred CCCCEEEEecCCCCcEEEEEE
Q 019103 299 SNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 299 ~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+|+-.|+.|....+.||+|..
T Consensus 376 ~DGallv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 376 PDGALLVLTDQGDGRILRVSY 396 (399)
T ss_pred CCCeEEEeecCCCCeEEEecC
Confidence 999988888888889999864
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.21 Score=49.66 Aligned_cols=111 Identities=12% Similarity=0.114 Sum_probs=69.0
Q ss_pred eeeeEEEEEEecCCCCcceeEEEecCCEEEEEcC-C-------C--CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC
Q 019103 90 IYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTG-L-------Y--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG 159 (346)
Q Consensus 90 ~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStG-l-------y--g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g 159 (346)
.+...-+..+....+.=..||++.++.--|+++- . . -.+.=.++|..+++++.. +--|+|+--.++
T Consensus 137 ~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~----GLsmPhSPRWhd 212 (335)
T TIGR03032 137 LWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVAS----GLSMPHSPRWYQ 212 (335)
T ss_pred ccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEc----CccCCcCCcEeC
Confidence 3333444555444455558999974334787642 1 0 012233478888876533 222344446678
Q ss_pred CEEEEEEeeCCEEEEEECCCC--cEEEEEecCCCceeEEeeCCCEEEEEC
Q 019103 160 EKLFQVTWLQKTGFIYDQNNL--NKLEEFTHQMKDGWGLATDGKVLFGSD 207 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl--~~i~ti~~~~peGwGLt~Dg~~LyvSd 207 (346)
++||++++..+.+..+|++++ +.+..+|-. +-|.+ ..|..+||+-
T Consensus 213 grLwvldsgtGev~~vD~~~G~~e~Va~vpG~-~rGL~--f~G~llvVgm 259 (335)
T TIGR03032 213 GKLWLLNSGRGELGYVDPQAGKFQPVAFLPGF-TRGLA--FAGDFAFVGL 259 (335)
T ss_pred CeEEEEECCCCEEEEEcCCCCcEEEEEECCCC-Ccccc--eeCCEEEEEe
Confidence 999999999999999998766 555555532 45444 4499999964
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.11 Score=53.04 Aligned_cols=154 Identities=12% Similarity=0.053 Sum_probs=95.2
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC--CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~--~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
=+.++||++-.+++| -+..+..||.+||......+-+ -.+---+--+++.+ +++--.++.+...|.+ +..++.-
T Consensus 274 yi~wSPDdryLlaCg--~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACG--FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred EEEECCCCCeEEecC--chHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCC-cchhhcc
Confidence 477889999888888 4557999999999876655433 11101111112222 4444445666666643 3334333
Q ss_pred ec---CCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe-eCCEEEEEecCCCeEEEEe
Q 019103 187 TH---QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-IKGEVWANVWQTDCIARIS 262 (346)
Q Consensus 187 ~~---~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~-~~G~LyaNv~~sn~I~vID 262 (346)
.. +.-.-.++|+||++++....+..+..++.++...++.|.-.. |+.. +.. .||++...+-..+.|-.=|
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its---~~iS~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITS---FSISKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeE---EEEcCCCcEEEEEcccCeeEEee
Confidence 22 212456789999999998888899999988866655554432 4432 212 2565554444688888888
Q ss_pred CCCCeEEEEE
Q 019103 263 HEDGVVLGWV 272 (346)
Q Consensus 263 ~~TG~Vv~~I 272 (346)
.+..+++..+
T Consensus 424 l~e~~lv~kY 433 (519)
T KOG0293|consen 424 LEENKLVRKY 433 (519)
T ss_pred cchhhHHHHh
Confidence 8877665544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.23 Score=53.64 Aligned_cols=204 Identities=14% Similarity=0.118 Sum_probs=123.7
Q ss_pred eeEEEEEEecCCCCcceeEEEecC-----CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeC-CEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEN-----DTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLG-EKLFQ 164 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d-----~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g-~~LY~ 164 (346)
+++-+++.|....- +|..+-++ +..+.+.| |++.++.||.++++...+...++ .-+-.++.... +++..
T Consensus 223 ~~~~l~~lp~ye~~--E~vv~l~~~~~~~~~~~~TaG--~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 223 QYKKLKTLPLYESL--ESVVRLREELGGKGEYIITAG--GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred hhhhhheechhhhe--eeEEEechhcCCcceEEEEec--CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 34555566653332 56666555 45778888 78899999999999877665442 22333444433 44554
Q ss_pred EEeeCCEEEEEECCCCcEEEEEecCCCceeE---EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019103 165 VTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG---LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 165 ltw~~~~v~V~D~~tl~~i~ti~~~~peGwG---Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
+| .++.+++||.+++++.++|---..|=.- +-++.++|.|+--+..+.++|..|..-. |..|- -. -++-|
T Consensus 299 vt-aeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~--ii~GH-~e---~vlSL 371 (775)
T KOG0319|consen 299 VT-AEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ--IIPGH-TE---AVLSL 371 (775)
T ss_pred EE-ccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE--EEeCc-hh---heeee
Confidence 44 3678899999999999998621112222 3355689998766778888888876643 44432 11 23345
Q ss_pred E-eeCCEEEEEecCCCeE--EEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 242 E-FIKGEVWANVWQTDCI--ARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 242 E-~~~G~LyaNv~~sn~I--~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
. +..|-++|+.-.++++ .++|-...+. .+. ++ ..--.+..-++|.+-.+-.|||++-+.-+|-.=
T Consensus 372 ~~~~~g~llat~sKD~svilWr~~~~~~~~-------~~~---a~-~~gH~~svgava~~~~~asffvsvS~D~tlK~W 439 (775)
T KOG0319|consen 372 DVWSSGDLLATGSKDKSVILWRLNNNCSKS-------LCV---AQ-ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW 439 (775)
T ss_pred eecccCcEEEEecCCceEEEEEecCCcchh-------hhh---hh-hcccccccceeeecccCccEEEEecCCceEEEe
Confidence 5 4567788888766664 3442222221 011 00 011133556788888888999999887765433
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.69 Score=47.05 Aligned_cols=83 Identities=10% Similarity=0.025 Sum_probs=60.3
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe------CCEEEEEEeeCCEEEEEE
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL------GEKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~------g~~LY~ltw~~~~v~V~D 176 (346)
.+.|.+-++.+|||+.+.|.-+ +++|..||+++|+.+.+.--+....-.+++.. +.+.++..-+++.+.|.|
T Consensus 156 H~~WVlcvawsPDgk~iASG~~--dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSK--DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred CccEEEEEEECCCcchhhcccc--CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 4678899999999998888664 45999999999987666544433333444443 245667778888888888
Q ss_pred CCCCcEEEEEe
Q 019103 177 QNNLNKLEEFT 187 (346)
Q Consensus 177 ~~tl~~i~ti~ 187 (346)
..-++.+-.+.
T Consensus 234 ~~~~~~~~~ls 244 (480)
T KOG0271|consen 234 TKLGTCVRTLS 244 (480)
T ss_pred ccCceEEEEec
Confidence 87777666554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.16 Score=54.44 Aligned_cols=180 Identities=17% Similarity=0.141 Sum_probs=109.0
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe------------eCCEEEEEECCCCcEE
Q 019103 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW------------LQKTGFIYDQNNLNKL 183 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw------------~~~~v~V~D~~tl~~i 183 (346)
.+|-+++ ++..|..|-+.++-.......+.. -++.++++||-+-| ++-+|-+.|.++.+..
T Consensus 641 ~rLAVa~---ddg~i~lWr~~a~gl~e~~~tPe~----~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~ 713 (1012)
T KOG1445|consen 641 ERLAVAT---DDGQINLWRLTANGLPENEMTPEK----ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLY 713 (1012)
T ss_pred HHeeecc---cCceEEEEEeccCCCCcccCCcce----eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhh
Confidence 4677765 345888888887765444444432 26677788876555 4678888999888887
Q ss_pred EEEec--CCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE---EEEEEeccCCeeeeeceeeEee-CCE-EEEEecCC-
Q 019103 184 EEFTH--QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV---IRKDIVRYKGREVRNLNELEFI-KGE-VWANVWQT- 255 (346)
Q Consensus 184 ~ti~~--~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv---i~~I~V~~~G~pv~~lNELE~~-~G~-LyaNv~~s- 255 (346)
-++.- +.--|.+-++||+++-.---+.+|.|..|...+. .+.-.|+..|-. +-|+ ||+ |.+.-+..
T Consensus 714 ~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgAR------i~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 714 SRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGAR------ILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred heeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCccee------EEEEecCcEEEEeccccc
Confidence 77753 1235666788999876655688999999988664 122223222222 2222 444 33332221
Q ss_pred --CeEEEEeCCCCe--EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 256 --DCIARISHEDGV--VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 256 --n~I~vID~~TG~--Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
..|.+-|.++.. -+.+.-+ +. .+..-+|. ||+|.+.||+|||..-++|--++.
T Consensus 788 SeRQv~~Y~Aq~l~~~pl~t~~l-Dv--------aps~LvP~---YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 788 SERQVQMYDAQTLDLRPLYTQVL-DV--------APSPLVPH---YDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred chhhhhhhhhhhccCCcceeeee-cc--------cCcccccc---ccCCCceEEEecCCCceEEEEEec
Confidence 234555544422 2222211 11 13344665 999999999999999988776664
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.18 Score=49.62 Aligned_cols=154 Identities=15% Similarity=0.064 Sum_probs=103.0
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCEEEEEECCCC
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
-+....|+.+..|+...+|+| .+-+|+.||.+||+..++.+.... |--.+.+ .|-.+...--.++++-++|..+.
T Consensus 89 HsgAVM~l~~~~d~s~i~S~g--tDk~v~~wD~~tG~~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 89 HSGAVMELHGMRDGSHILSCG--TDKTVRGWDAETGKRIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK 165 (338)
T ss_pred ccceeEeeeeccCCCEEEEec--CCceEEEEecccceeeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence 355568999999897777888 667999999999999999887654 3333443 23456666778999999999999
Q ss_pred cEEEEE--ecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeE
Q 019103 181 NKLEEF--THQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCI 258 (346)
Q Consensus 181 ~~i~ti--~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I 258 (346)
+.++++ +++. -..++.-++..++..-=+|.|-++|+...+......=.. -++..+- + ..+|.-.-.+.+++++
T Consensus 166 ~~~~t~~~kyql-tAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~--DtIt~ls-l-s~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 166 EAIKTFENKYQL-TAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA--DTITGLS-L-SRYGSFLLSNSMDNTV 240 (338)
T ss_pred chhhccccceeE-EEEEecccccceeeccccCceeeeccccCcceEEeeccc--CceeeEE-e-ccCCCccccccccceE
Confidence 999998 4441 223333345555443338999999998877765544322 2443321 1 1234333345578888
Q ss_pred EEEeCC
Q 019103 259 ARISHE 264 (346)
Q Consensus 259 ~vID~~ 264 (346)
-+.|.+
T Consensus 241 rvwd~r 246 (338)
T KOG0265|consen 241 RVWDVR 246 (338)
T ss_pred EEEEec
Confidence 888765
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.61 Score=45.37 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCCCCeEEEEECC--CCcEEEEeccC-CCeeEEEEEEeCCEEEEEEee-----------CCEEEEEECCCC
Q 019103 115 NDTLFESTGLYGRSSVRRVALE--TGKVEAINQME-GSYFGEGLTLLGEKLFQVTWL-----------QKTGFIYDQNNL 180 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~--Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~-----------~~~v~V~D~~tl 180 (346)
+++||+..|. ..+.+.++|++ +.+-....+++ ......+++..+++||+.--. -+.+++||+.+.
T Consensus 17 ~~~vyv~GG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 17 GDKVYVGLGS-AGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEccc-cCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 5899998774 45788999974 34444444555 233455678889999998543 246999998875
Q ss_pred cEEEEE-ecC-CCceeE-EeeCCCEEEEECC
Q 019103 181 NKLEEF-THQ-MKDGWG-LATDGKVLFGSDG 208 (346)
Q Consensus 181 ~~i~ti-~~~-~peGwG-Lt~Dg~~LyvSdG 208 (346)
+-..-- +.+ ...|-+ ++.-+++||+.=|
T Consensus 96 ~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 96 SWQKLDTRSPVGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred EEecCCCCCCCcccceeEEEEeCCEEEEEcC
Confidence 543321 222 112333 3245678888543
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.29 Score=48.61 Aligned_cols=196 Identities=13% Similarity=0.177 Sum_probs=128.0
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCC------------CcEEEEeccCCCee--E---EEEEEeC-CEEEEEEee
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALET------------GKVEAINQMEGSYF--G---EGLTLLG-EKLFQVTWL 168 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~T------------gkv~~~~~l~~~~F--g---eGit~~g-~~LY~ltw~ 168 (346)
.+--+|++||.|+-+.+ -+-+|.++|..- |..-+++++=...+ . --+..+. +.|.+..-+
T Consensus 115 cR~aafs~DG~lvATGs--aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr 192 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGS--ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR 192 (430)
T ss_pred eeeeeeCCCCcEEEccC--CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC
Confidence 36778999999887655 567899998762 11111111100000 0 1122222 568888889
Q ss_pred CCEEEEEECCCCcEEEEEecC----CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019103 169 QKTGFIYDQNNLNKLEEFTHQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~~~----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
++.+-.||-..-...+.|++- .---..+.|-|+.|.+.-....+.+.|.+|++--..-.- ++++ -..++...|-
T Consensus 193 D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanP-d~qh-t~ai~~V~Ys 270 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANP-DDQH-TGAITQVRYS 270 (430)
T ss_pred CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCc-cccc-ccceeEEEec
Confidence 999999998766665655541 112334678899999977788999999999876422221 1111 1233445555
Q ss_pred -CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC-CcEEEE
Q 019103 245 -KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW-PKLYEI 317 (346)
Q Consensus 245 -~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W-p~l~ev 317 (346)
.|.|||+--.+..|-.-|--+++++.+|. .. -++.-....-|+.+++.++-.||.. -+|+||
T Consensus 271 ~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-----~A------H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 271 STGSLYVTASKDGAIKLWDGVSNRCVRTIG-----NA------HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred CCccEEEEeccCCcEEeeccccHHHHHHHH-----hh------cCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence 68999999999999999999999998882 11 1234456677999999999999875 355555
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.73 Score=49.90 Aligned_cols=186 Identities=15% Similarity=0.155 Sum_probs=116.5
Q ss_pred EecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-C-CEEEEEEeeCCEEEEEE
Q 019103 99 FPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-G-EKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 99 ~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g-~~LY~ltw~~~~v~V~D 176 (346)
+-|...-| |..|+|+.++++|+. ++++|+.|.++|-.-+-... +..++.+.... . +..|+..--+++.-++.
T Consensus 448 ~GH~GPVy--g~sFsPd~rfLlScS--ED~svRLWsl~t~s~~V~y~--GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 448 YGHSGPVY--GCSFSPDRRFLLSCS--EDSSVRLWSLDTWSCLVIYK--GHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred ecCCCcee--eeeecccccceeecc--CCcceeeeecccceeEEEec--CCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 45655554 999999999999988 78899999999876544443 22222222221 2 33333334455555566
Q ss_pred CCCCcEEEEEecC-CCce-eEEeeCCCEEEEECC--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEE
Q 019103 177 QNNLNKLEEFTHQ-MKDG-WGLATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWAN 251 (346)
Q Consensus 177 ~~tl~~i~ti~~~-~peG-wGLt~Dg~~LyvSdG--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaN 251 (346)
.+.-+.+.-|.-. .-.+ ..+.|+.. |++.| +.++..+|..|+..++... | +-.|+. .|.|- +|+-.|.
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~--Y~aTGSsD~tVRlWDv~~G~~VRiF~-G-H~~~V~---al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSN--YVATGSSDRTVRLWDVSTGNSVRIFT-G-HKGPVT---ALAFSPCGRYLAS 594 (707)
T ss_pred cccCCchhhhcccccccceEEECCccc--ccccCCCCceEEEEEcCCCcEEEEec-C-CCCceE---EEEEcCCCceEee
Confidence 5554554444321 1222 45666666 77776 5599999999999876662 2 334544 24444 6766666
Q ss_pred ecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 252 VWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
--..+.|.+=|..+|+.+..+ ++ + -+.-+-|.|+.+|..|-+.|..
T Consensus 595 g~ed~~I~iWDl~~~~~v~~l-----~~----H----t~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGSLVKQL-----KG----H----TGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred cccCCcEEEEEcCCCcchhhh-----hc----c----cCceeEEEEecCCCEEEecCCC
Confidence 666778888899999876554 11 1 2355778999998877666643
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.17 Score=51.90 Aligned_cols=134 Identities=20% Similarity=0.222 Sum_probs=88.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEE
Q 019103 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVL 203 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~L 203 (346)
+.+.++|+++|+-..........+.-...++|++|..+.-+ +-.++++|..+....+ +... .-.+-.++|||+++
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~i 296 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKI 296 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEE
Confidence 78999999999887777777766677788889887776544 4569999988777433 4432 11222478999875
Q ss_pred -EEEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCE--EEEEecCCC--eEEEEeCCCCeE
Q 019103 204 -FGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE--VWANVWQTD--CIARISHEDGVV 268 (346)
Q Consensus 204 -yvSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~--LyaNv~~sn--~I~vID~~TG~V 268 (346)
|+|| |.-+|+..|++..++ .+++-...+.- +..--.||+ +|++ ...+ .|.+-|+.++.-
T Consensus 297 vf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~----~p~~SpdG~~i~~~~-~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 297 VFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS----NPVWSPDGDKIVFES-SSGGQWDIDKNDLASGGK 362 (425)
T ss_pred EEEeCCCCCcceEEECCCCCce-eEeeccCCCCc----CccCCCCCCEEEEEe-ccCCceeeEEeccCCCCc
Confidence 7788 577999999998877 44444332221 111123553 4455 2223 477777877764
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.089 Score=53.47 Aligned_cols=120 Identities=12% Similarity=0.072 Sum_probs=86.6
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCC-EEEEEEeeCCEEEEEECCCCcEE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE-KLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~-~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
.-..+++|+|++.-|+++. +++.|.+||..-.|....+ -+.+.-..-++.+.. -|.++--+++.|-..|+++++.+
T Consensus 181 eaIRdlafSpnDskF~t~S--dDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCS--DDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhheeccCCCCceeEEec--CCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 4458999999888888888 7789999999988765555 222221222344443 35556678889999999999999
Q ss_pred EEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019103 184 EEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 184 ~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
.++..- .--+.-+.+++.+|...-.+..+.++|-.+++.+.+..
T Consensus 258 ~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r 303 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR 303 (464)
T ss_pred hhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh
Confidence 988642 11344567888888776668899999999888765444
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.3 Score=47.74 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=49.4
Q ss_pred CCeEEEEeCCCCcEEEEEEeccC----------------------CeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCC
Q 019103 209 SSMLYQIDPQTLKVIRKDIVRYK----------------------GREVRNLNELEFI-KGEVWANVWQTDCIARISHED 265 (346)
Q Consensus 209 s~~l~vIDp~T~kvi~~I~V~~~----------------------G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~T 265 (346)
++.+..||++|++++-++.+.++ ..-.-++|-++.. +|.+.+..=..+.|.+||++|
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC
Confidence 67899999999999877766541 0122356766655 567788888899999999999
Q ss_pred CeEEEEE
Q 019103 266 GVVLGWV 272 (346)
Q Consensus 266 G~Vv~~I 272 (346)
|+|+=++
T Consensus 175 G~I~W~l 181 (299)
T PF14269_consen 175 GKIIWRL 181 (299)
T ss_pred CcEEEEe
Confidence 9998777
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.99 Score=46.82 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=80.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeEEEE-EEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCC-----CceeEEeeC
Q 019103 126 GRSSVRRVALETGKVEAINQMEGSYFGEGL-TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-----KDGWGLATD 199 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGi-t~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~-----peGwGLt~D 199 (346)
.......+|.+ |.|+-..+++...... + -+.++.++...- +.+..+|. .++++..+..+. -.-+...++
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~-~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNS-FKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SS-EEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECCC-ccEEEEEccCccccce-eeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCC
Confidence 34566777765 7777666654322110 2 234455555443 77888886 467777766541 122334456
Q ss_pred CCEEEEEC---------C----CCeEEEEeCCCCcEEEEEEeccC---Ce-------------------eeeeceeeEee
Q 019103 200 GKVLFGSD---------G----SSMLYQIDPQTLKVIRKDIVRYK---GR-------------------EVRNLNELEFI 244 (346)
Q Consensus 200 g~~LyvSd---------G----s~~l~vIDp~T~kvi~~I~V~~~---G~-------------------pv~~lNELE~~ 244 (346)
|+.|+.+. + .+.|..+| .|++++..+...+. -+ --.++|.+.|.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 88887654 1 67899999 89999999988662 11 11468888887
Q ss_pred C--CEEEEEecCCCeEEEEeCCCCeEEEEE
Q 019103 245 K--GEVWANVWQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 245 ~--G~LyaNv~~sn~I~vID~~TG~Vv~~I 272 (346)
. +.|.++.-..+.|.+||.+|++|+-.+
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 4 799999999999999999999996666
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.2 Score=42.97 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=60.7
Q ss_pred eEEEecCCEEEEEcCCC---CCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEeeC----CEEEEEECCCC
Q 019103 109 GLLYAENDTLFESTGLY---GRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQ----KTGFIYDQNNL 180 (346)
Q Consensus 109 GL~~~~d~~LyeStGly---g~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~~----~~v~V~D~~tl 180 (346)
+.++. +++||+..|.. ..+.+.+||+.+.+-...-+++. ...+..++..+++||+.--.+ ..+++||+++.
T Consensus 118 ~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 118 SACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 34444 58999987742 23679999999998655444542 233445667889999985432 35789998875
Q ss_pred cE--EEEEecC-CC----ceeEEeeCCCEEEEECC
Q 019103 181 NK--LEEFTHQ-MK----DGWGLATDGKVLFGSDG 208 (346)
Q Consensus 181 ~~--i~ti~~~-~p----eGwGLt~Dg~~LyvSdG 208 (346)
+- +...+.+ .| ..-++...++++|+.=|
T Consensus 197 ~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 197 QWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred eeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 43 3322111 11 23345666778888543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.48 Score=45.47 Aligned_cols=179 Identities=17% Similarity=0.238 Sum_probs=114.5
Q ss_pred CCEEEEEcCCCCCCeEEEEEC----CCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC-
Q 019103 115 NDTLFESTGLYGRSSVRRVAL----ETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl----~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~- 189 (346)
+++.|+.++ +....|..+.. ..|..-..+.+|...-|-|-.+.++-+|-.-.....+.+||.+++.+..+...+
T Consensus 30 ~~r~~~~~~-~~~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~ 108 (249)
T KOG3545|consen 30 DDRIYVMNY-FDGLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPY 108 (249)
T ss_pred cCceEEecc-ccCceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccCCcceEEEEeecceeeeeeeccc
Confidence 456666633 45556666644 334455566677666677778888888888888899999999997777765421
Q ss_pred ------CCceeE------EeeCCC--E-EEEECCCC---eEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEE
Q 019103 190 ------MKDGWG------LATDGK--V-LFGSDGSS---MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (346)
Q Consensus 190 ------~peGwG------Lt~Dg~--~-LyvSdGs~---~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaN 251 (346)
.|..|+ |+-|.. | +|.+++++ .|+.+||.|.++.++..+..+.+.++ +.=.+=|-|||-
T Consensus 109 a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~---~aF~iCGvLY~v 185 (249)
T KOG3545|consen 109 AGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPKRSAG---NAFMICGVLYVV 185 (249)
T ss_pred cccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeeccccCCCCcC---ceEEEeeeeEEE
Confidence 245555 333444 3 34466533 44789999999999998876433322 222446888863
Q ss_pred e-cC-CCe-E-EEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 252 V-WQ-TDC-I-ARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 252 v-~~-sn~-I-~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
. .. .++ | ...|+.+|+- ..++++ +... -.-...|-|+|..++||+=
T Consensus 186 ~S~~~~~~~i~yaydt~~~~~-~~~~ip-f~N~--------y~~~~~idYNP~D~~LY~w 235 (249)
T KOG3545|consen 186 HSYNCTHTQISYAYDTTTGTQ-ERIDLP-FPNP--------YSYATMIDYNPRDRRLYAW 235 (249)
T ss_pred eccccCCceEEEEEEcCCCce-eccccc-ccch--------hhhhhccCCCcccceeeEe
Confidence 2 22 233 3 5889999886 455442 2211 1234668899999999984
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.18 Score=54.01 Aligned_cols=154 Identities=15% Similarity=0.185 Sum_probs=88.7
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCC-CcEEEEEEeccCCeeee
Q 019103 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQT-LKVIRKDIVRYKGREVR 236 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T-~kvi~~I~V~~~G~pv~ 236 (346)
+.+|... .+.++++|..|.+.+-+..- + .-.-..-+.||+.|-+|+-+.+|.++||.+ ++-+.+.+-.. |
T Consensus 142 gil~s~a--~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~-~---- 214 (1012)
T KOG1445|consen 142 GILASGA--HGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG-G---- 214 (1012)
T ss_pred ceEEecc--CceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccc-c----
Confidence 4455444 68899999999988877752 1 001112467899999999999999999976 33332221111 0
Q ss_pred eceeeEeeCC-EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccC---CCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 237 NLNELEFIKG-EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGY---NGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 237 ~lNELE~~~G-~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~---~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
.-|. -+|+.+|..=.-.-+|.+--+-+..+|+..+..-+..... ...-+| -||||.+.||.+||.-.
T Consensus 215 ------~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiP---l~DpDt~llfLaGKG~~ 285 (1012)
T KOG1445|consen 215 ------MRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIP---LYDPDTRLLFLAGKGTN 285 (1012)
T ss_pred ------chhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEee---eecCCCceEEEecCCcc
Confidence 0122 3777776432222333333333334443222110000000 111123 39999999999999999
Q ss_pred cEEEEEEeeccccccCC
Q 019103 313 KLYEINLREMKRERKDG 329 (346)
Q Consensus 313 ~l~ev~l~~~~~~~~~~ 329 (346)
+||-.+.++..--.-++
T Consensus 286 ~l~~lE~~d~qPyLs~v 302 (1012)
T KOG1445|consen 286 KLFMLEMQDRQPYLSHV 302 (1012)
T ss_pred eEEEEEecCCCcchhhh
Confidence 99999987644443444
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.5 Score=43.40 Aligned_cols=197 Identities=15% Similarity=0.220 Sum_probs=115.2
Q ss_pred ecCCCCcceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCc------EEEEe-------ccCCCeeEEEEEE---eCCEE
Q 019103 100 PHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGK------VEAIN-------QMEGSYFGEGLTL---LGEKL 162 (346)
Q Consensus 100 phd~~~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgk------v~~~~-------~l~~~~FgeGit~---~g~~L 162 (346)
||...- .-|.+++. |++.+|.| .++.|.+||++.-. .+... .-....|+..-+. .+.-.
T Consensus 41 ~HgGsv--NsL~id~tegrymlSGg--adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSV--NSLQIDLTEGRYMLSGG--ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCcc--ceeeeccccceEEeecC--CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 465444 46666653 58889988 56699999997532 11111 1122345543333 24558
Q ss_pred EEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeC--CCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCe-eee-
Q 019103 163 FQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATD--GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGR-EVR- 236 (346)
Q Consensus 163 Y~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~D--g~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~-pv~- 236 (346)
|...-.++.+-|.|++|++..-.|..+ +-+--+++|- ...|+.+- .+.+|..-|.+.+.-.+++.=..+|. .+.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred eecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 888889999999999999999999875 2233334543 35566643 47789999999888777665544332 111
Q ss_pred -eceeeEee----CC--EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 237 -NLNELEFI----KG--EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 237 -~lNELE~~----~G--~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
.-+|.-.. || ++|=---.+.+..+.|...++-.-.+ . +...-....||+||+.++..++..|-
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~-----~-----~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPIL-----K-----TNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccc-----c-----ccccccceeeeeeecccchhhhhccC
Confidence 11121111 33 34422223456666666665321111 1 00111346799999999998876654
Q ss_pred C
Q 019103 310 L 310 (346)
Q Consensus 310 ~ 310 (346)
.
T Consensus 267 d 267 (397)
T KOG4283|consen 267 D 267 (397)
T ss_pred c
Confidence 3
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.43 Score=48.51 Aligned_cols=133 Identities=18% Similarity=0.190 Sum_probs=68.7
Q ss_pred eEEEEEEecCC----CCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEE
Q 019103 93 IQVVNEFPHDP----RAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVT 166 (346)
Q Consensus 93 ~~Vv~t~phd~----~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~lt 166 (346)
.+|++--|.+. --|+|--. .+|| +|+.++-..|...+..+|++|+++.+-...+ ...||+=++...+.+|- -
T Consensus 21 ~~VtrLT~~~~~~h~~YF~~~~f-t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y-v 98 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLYFYQNCF-TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY-V 98 (386)
T ss_dssp -EEEE-S-TTS-EE---TTS--B--TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE-E
T ss_pred ceEEEecCCCCcccceeecCCCc-CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE-E
Confidence 45665555432 23444333 3456 5444444568999999999999988777764 45677766767777643 2
Q ss_pred eeCCEEEEEECCCCcEEEEEecCCCceeE------EeeCCCEEEEEC-----C-----------------CCeEEEEeCC
Q 019103 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWG------LATDGKVLFGSD-----G-----------------SSMLYQIDPQ 218 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~~~peGwG------Lt~Dg~~LyvSd-----G-----------------s~~l~vIDp~ 218 (346)
+.++.+..+|.+|++...-+.. |++|. +..|+..+.... . ...|..||..
T Consensus 99 ~~~~~l~~vdL~T~e~~~vy~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 99 KNGRSLRRVDLDTLEERVVYEV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp ETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred ECCCeEEEEECCcCcEEEEEEC--CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 3467999999999987554444 23333 455665543211 1 2468899999
Q ss_pred CCcEEEEEEec
Q 019103 219 TLKVIRKDIVR 229 (346)
Q Consensus 219 T~kvi~~I~V~ 229 (346)
|++...-+...
T Consensus 177 tG~~~~v~~~~ 187 (386)
T PF14583_consen 177 TGERKVVFEDT 187 (386)
T ss_dssp T--EEEEEEES
T ss_pred CCceeEEEecC
Confidence 98865444443
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.19 Score=51.28 Aligned_cols=104 Identities=16% Similarity=0.184 Sum_probs=77.4
Q ss_pred cCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC---CCceeE---
Q 019103 122 TGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWG--- 195 (346)
Q Consensus 122 tGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---~peGwG--- 195 (346)
+|- -+..|+.||..+++....+++++..=..-+...+.+|... -.++.+-++|..+.++..+|..+ -..-|.
T Consensus 317 SgH-~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 317 SGH-FDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred ecc-cccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 343 3457999999999999999998865343333445566665 78899999999999999999753 112243
Q ss_pred EeeCCCEEEEECC--CCeEEEEeCCCCcEEEEEEec
Q 019103 196 LATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 196 Lt~Dg~~LyvSdG--s~~l~vIDp~T~kvi~~I~V~ 229 (346)
++||+. |++-| +..|++++..|.|+.+.+.-.
T Consensus 395 fSpd~~--YvaAGS~dgsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 395 FSPDGS--YVAAGSADGSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred ECCCCc--eeeeccCCCcEEEEEccCceEEEEeccC
Confidence 788888 44443 668999999999998877663
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.4 Score=46.05 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=95.1
Q ss_pred CC-EEEEEcCCCCCCeEEEEECCCCcEEEE-e--ccC----------CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 115 ND-TLFESTGLYGRSSVRRVALETGKVEAI-N--QME----------GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 115 d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~-~--~l~----------~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
|| ++..+.| | .|..+|++|.++..- + ++. +.-|.|-.++.++..+++ ...+++|+.+....
T Consensus 277 DGkrIvFq~~--G--dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~-VSRGkaFi~~~~~~ 351 (668)
T COG4946 277 DGKRIVFQNA--G--DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIAL-VSRGKAFIMRPWDG 351 (668)
T ss_pred CCcEEEEecC--C--cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEE-EecCcEEEECCCCC
Confidence 44 5666665 4 788899988775332 1 221 234677777877665554 34689999998765
Q ss_pred cEEEEEecCCCceeE---EeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecC
Q 019103 181 NKLEEFTHQMKDGWG---LATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ 254 (346)
Q Consensus 181 ~~i~ti~~~~peGwG---Lt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~ 254 (346)
-. ++++.+.|.- +..|++.+.+ ++..+.|-+.|..+.++.+... +++++-.+... || ++.|+| .
T Consensus 352 ~~---iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~------~lg~I~av~vs~dGK~~vvaN-d 421 (668)
T COG4946 352 YS---IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK------DLGNIEAVKVSPDGKKVVVAN-D 421 (668)
T ss_pred ee---EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC------CccceEEEEEcCCCcEEEEEc-C
Confidence 43 3444334433 3345665555 4456789999998877653321 22222223222 45 466555 3
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019103 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
.-.|.+||.+||.|. .||-+ .....-+++|+|+.+
T Consensus 422 r~el~vididngnv~-~idkS------------~~~lItdf~~~~nsr 456 (668)
T COG4946 422 RFELWVIDIDNGNVR-LIDKS------------EYGLITDFDWHPNSR 456 (668)
T ss_pred ceEEEEEEecCCCee-Eeccc------------ccceeEEEEEcCCce
Confidence 668999999999973 34321 123456677777655
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.74 Score=48.23 Aligned_cols=207 Identities=14% Similarity=0.097 Sum_probs=135.1
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE-EeeCC
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV-TWLQK 170 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l-tw~~~ 170 (346)
++.+++...-| ++| .+... ...+|+.+|.. ...|.+||++...+.+..+=.. -=-.+++...+.=|++ .-..+
T Consensus 70 ~Vp~~~k~~gd-~~~--Cv~~~-s~S~y~~sgG~-~~~Vkiwdl~~kl~hr~lkdh~-stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 70 EVPRVRKLTGD-NAF--CVACA-SQSLYEISGGQ-SGCVKIWDLRAKLIHRFLKDHQ-STVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred ccceeeccccc-hHH--HHhhh-hcceeeeccCc-CceeeehhhHHHHHhhhccCCc-ceeEEEEecCCcceeEEeccCC
Confidence 46667776665 555 33332 13488877732 2478889999444444333222 2235566655555555 45678
Q ss_pred EEEEEECCCCcEEEEEecCCCceeE---EeeCCCEEEEECC-CCeEEEEeCCCCcEEEEE-Eec---cCCeeeeeceeeE
Q 019103 171 TGFIYDQNNLNKLEEFTHQMKDGWG---LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKD-IVR---YKGREVRNLNELE 242 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~peGwG---Lt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I-~V~---~~G~pv~~lNELE 242 (346)
.+.+-..+|.....+|..+.++-.- .++-.+.|.++-+ ...|+++|...+.-+... ++. ..|.-+...||
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne-- 221 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE-- 221 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc--
Confidence 9999999999998889875333332 3556677777554 669999998776554322 221 23444444444
Q ss_pred eeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec
Q 019103 243 FIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322 (346)
Q Consensus 243 ~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~ 322 (346)
.|+|.+.++..|...|..+.+-+.+|-.+ .-+-.+||.++| ..+++|-.-++||.-++...
T Consensus 222 ----~l~vsVG~Dkki~~yD~~s~~s~~~l~y~--------------~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 222 ----ALLVSVGYDKKINIYDIRSQASTDRLTYS--------------HPLSTVAFSECG-TYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred ----ceEEEecccceEEEeecccccccceeeec--------------CCcceeeecCCc-eEEEeecCCceEEEEecccC
Confidence 89999999999999999999888877431 135668898664 56788888899988887654
Q ss_pred ccc
Q 019103 323 KRE 325 (346)
Q Consensus 323 ~~~ 325 (346)
+++
T Consensus 283 k~P 285 (673)
T KOG4378|consen 283 KAP 285 (673)
T ss_pred CCC
Confidence 443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.6 Score=45.09 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=41.5
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
-+++++||+.+.+.| .+..|++||.+|++-++..+- -+..++-++-.--++||.+.. +..+-+++.+.+
T Consensus 207 ~~avS~Dgkylatgg--~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~-Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGG--RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA-DRSVKVWSIDQL 276 (479)
T ss_pred EEEEcCCCcEEEecC--CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec-CCceEEEehhHh
Confidence 578889999888877 556889999999987666432 233333222222356775532 233344443333
|
|
| >PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats | Back alignment and domain information |
|---|
Probab=95.22 E-value=4.2 Score=42.97 Aligned_cols=139 Identities=17% Similarity=0.207 Sum_probs=89.3
Q ss_pred ceeeeEEEEEEecCCCCcceeEEEecC--------CEEEEEcCCCC--------------------CCeEEEEECCCCcE
Q 019103 89 SIYTIQVVNEFPHDPRAFTQGLLYAEN--------DTLFESTGLYG--------------------RSSVRRVALETGKV 140 (346)
Q Consensus 89 ~~~t~~Vv~t~phd~~~FTqGL~~~~d--------~~LyeStGlyg--------------------~s~V~~iDl~Tgkv 140 (346)
....+.+|-.+..++.....-..+.++ +.||+++..+. ...|++|+++.|++
T Consensus 181 ~~~~~~~i~s~dl~~~~~~~~~~~~g~~~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~~~T~I~kf~~~~~~~ 260 (521)
T PF09826_consen 181 SGSNYTTITSIDLDPDKASDSTSVLGSGGNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEESNESTTIYKFALDGGKI 260 (521)
T ss_pred CCCcEEEEEEEeCCCCCccceeEEEecCCEEEEeCCcEEEEEecccccccccchhccccccccCCCceEEEEEEccCCcE
Confidence 334566777777655544333333322 35565554433 36899999998876
Q ss_pred E--EEeccCC---CeeEEEEEEeCCEEEEEEe-----------eCCEEEEEECCCCcEEEEEecCCC--ceeEEeeCCCE
Q 019103 141 E--AINQMEG---SYFGEGLTLLGEKLFQVTW-----------LQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKV 202 (346)
Q Consensus 141 ~--~~~~l~~---~~FgeGit~~g~~LY~ltw-----------~~~~v~V~D~~tl~~i~ti~~~~p--eGwGLt~Dg~~ 202 (346)
. +...+++ +.|. +.-.++.|-++|- ..|.++|+| ++++++++++.-+| .=++.=..|++
T Consensus 261 ~y~~sg~V~G~llnqFs--mdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~ 337 (521)
T PF09826_consen 261 EYVGSGSVPGYLLNQFS--MDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDR 337 (521)
T ss_pred EEEEEEEECcEEccccc--EeccCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCe
Confidence 4 3444543 3344 4556777777751 468899999 99999999984211 11223346888
Q ss_pred EEEE-C-CCCeEEEEe---CCCCcEEEEEEecc
Q 019103 203 LFGS-D-GSSMLYQID---PQTLKVIRKDIVRY 230 (346)
Q Consensus 203 LyvS-d-Gs~~l~vID---p~T~kvi~~I~V~~ 230 (346)
.|+- = ..+=+++|| |+.-+++..+++..
T Consensus 338 ~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPG 370 (521)
T PF09826_consen 338 AYLVTFRQVDPLFVIDLSDPANPKVLGELKIPG 370 (521)
T ss_pred EEEEEEeecCceEEEECCCCCCCceeeEEECcc
Confidence 8884 3 578999998 55688999999954
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.39 Score=49.49 Aligned_cols=156 Identities=11% Similarity=0.081 Sum_probs=105.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCC-------CcEEEEeccCCCeeEEEEEE---------eCCEEEEEEeeCCE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALET-------GKVEAINQMEGSYFGEGLTL---------LGEKLFQVTWLQKT 171 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~T-------gkv~~~~~l~~~~FgeGit~---------~g~~LY~ltw~~~~ 171 (346)
.-|.|++||..++|.| .++.|.+|++-+ +.+.....+.. +++.+ .+.+||.+. .+++
T Consensus 127 TcL~fs~dgs~iiTgs--kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~----HtlsITDl~ig~Gg~~~rl~TaS-~D~t 199 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGS--KDGAVLVWLLTDLVSADNDHSVKPLHIFSD----HTLSITDLQIGSGGTNARLYTAS-EDRT 199 (476)
T ss_pred eEEEEeCCCcEEEecC--CCccEEEEEEEeecccccCCCccceeeecc----CcceeEEEEecCCCccceEEEec-CCce
Confidence 5678999999999999 667999997643 22222222211 22222 235677664 4699
Q ss_pred EEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCc---E------------EEEEEeccC-Cee
Q 019103 172 GFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLK---V------------IRKDIVRYK-GRE 234 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~k---v------------i~~I~V~~~-G~p 234 (346)
+-++|...+.++.++..+ ..-...|+|-+.++|+-...+.|++++-.+.. . ....-+|.. +.+
T Consensus 200 ~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 200 IKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESA 279 (476)
T ss_pred EEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcc
Confidence 999999999999999876 45777889999999997778889998854433 1 111222221 233
Q ss_pred eeeceeeEe-eCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Q 019103 235 VRNLNELEF-IKGEVWANVWQTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 235 v~~lNELE~-~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~ 273 (346)
+.- |++ .||.+.+.=-.++.|.+=|+.+.+++.++-
T Consensus 280 ITc---Lais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 280 ITC---LAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeE---EEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 332 333 388888877778889999999988877763
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.6 Score=48.50 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=115.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCc---EEEEeccCCCeeEEEEEEeCCEEEEE-EeeCCEEEEEECCCCcEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGK---VEAINQMEGSYFGEGLTLLGEKLFQV-TWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk---v~~~~~l~~~~FgeGit~~g~~LY~l-tw~~~~v~V~D~~tl~~i 183 (346)
.+++... ..|.++. .++.|.+|...+++ ++.+..+|-+. +++.++.=|++ --.+-.|-+++..+....
T Consensus 60 ~~ia~~s--~~f~~~s--~~~tv~~y~fps~~~~~iL~Rftlp~r~----~~v~g~g~~iaagsdD~~vK~~~~~D~s~~ 131 (933)
T KOG1274|consen 60 SSIACYS--NHFLTGS--EQNTVLRYKFPSGEEDTILARFTLPIRD----LAVSGSGKMIAAGSDDTAVKLLNLDDSSQE 131 (933)
T ss_pred EEEeecc--cceEEee--ccceEEEeeCCCCCccceeeeeeccceE----EEEecCCcEEEeecCceeEEEEeccccchh
Confidence 4666543 2444434 56799999888765 67777777643 55655433433 444556778888888777
Q ss_pred EEEe-cCC-CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC------CeeeeeceeeEee--CCEEEEEec
Q 019103 184 EEFT-HQM-KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK------GREVRNLNELEFI--KGEVWANVW 253 (346)
Q Consensus 184 ~ti~-~~~-peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~------G~pv~~lNELE~~--~G~LyaNv~ 253 (346)
+.+. +.. --+.-+.|.++.|-++..+++|+++|.+++.+..++.--.. .+++ +.+.|. +|.+-| .-
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~---~~~aW~Pk~g~la~-~~ 207 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRIC---TRLAWHPKGGTLAV-PP 207 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccccccee---eeeeecCCCCeEEe-ec
Confidence 7664 321 13444667789999999999999999999998877654221 1111 122333 455443 33
Q ss_pred CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 254 QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
-.++|.++++++++....+-. +. ...+.+-++|+|.|++|--.+
T Consensus 208 ~d~~Vkvy~r~~we~~f~Lr~-~~----------~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 208 VDNTVKVYSRKGWELQFKLRD-KL----------SSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred cCCeEEEEccCCceeheeecc-cc----------cccceEEEEEcCCCcEEeeec
Confidence 599999999999998777733 11 112477889999988665433
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.5 Score=48.08 Aligned_cols=199 Identities=16% Similarity=0.190 Sum_probs=104.9
Q ss_pred cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC-CEEEEEECCC
Q 019103 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-KTGFIYDQNN 179 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~-~~v~V~D~~t 179 (346)
|...++ -|...+|+.+.++.. .++.++.||...|+++....-...+ ..|++.+.-.=|+++--. ....+++.+.
T Consensus 122 h~~diy--dL~Ws~d~~~l~s~s--~dns~~l~Dv~~G~l~~~~~dh~~y-vqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 122 HRDDIY--DLAWSPDSNFLVSGS--VDNSVRLWDVHAGQLLAILDDHEHY-VQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred cccchh--hhhccCCCceeeeee--ccceEEEEEeccceeEeeccccccc-cceeecchhhhhhhhhccCcccceeeeee
Confidence 666675 788888887777755 6789999999999988776544332 455565532222222111 1233333333
Q ss_pred CcEEEEEec-------C-CCcee-----------------EEeeCCCEEEEECC---------CCeEEEEeCCCCcE---
Q 019103 180 LNKLEEFTH-------Q-MKDGW-----------------GLATDGKVLFGSDG---------SSMLYQIDPQTLKV--- 222 (346)
Q Consensus 180 l~~i~ti~~-------~-~peGw-----------------GLt~Dg~~LyvSdG---------s~~l~vIDp~T~kv--- 222 (346)
-+++..+.+ + ..||- .+||||..|..=.| -|..|+++-...+.
T Consensus 197 ~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~ 276 (434)
T KOG1009|consen 197 KQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA 276 (434)
T ss_pred eeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee
Confidence 333222220 0 01111 23455554443222 34556666544332
Q ss_pred ------EEEEEeccCCeeeee----ceeeEee---CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCC
Q 019103 223 ------IRKDIVRYKGREVRN----LNELEFI---KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGI 289 (346)
Q Consensus 223 ------i~~I~V~~~G~pv~~----lNELE~~---~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~ 289 (346)
...+.|+. .|+++ +++.++. -=++-.++-..|.|++-|+++-+-++.++ ++- .
T Consensus 277 ~lp~~~k~~lavr~--~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~--nih----y------ 342 (434)
T KOG1009|consen 277 RLPSPKKPALAVRF--SPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVD--NIH----Y------ 342 (434)
T ss_pred ecCCCCcceEEEEe--eeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEe--eee----e------
Confidence 22333322 23321 1111110 01344456679999999999977555442 111 0
Q ss_pred ceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 290 DVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 290 ~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
..+--|||+++|..|+|+-. .++..-|.+
T Consensus 343 ~~iTDiaws~dg~~l~vSS~-DGyCS~vtf 371 (434)
T KOG1009|consen 343 SAITDIAWSDDGSVLLVSST-DGFCSLVTF 371 (434)
T ss_pred eeecceeecCCCcEEEEecc-CCceEEEEE
Confidence 12345999999999999853 455555544
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.11 Score=53.39 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=82.0
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE-------------E
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK-------------L 183 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~-------------i 183 (346)
+||-+ + .+..+..||+..|+++..+.+|..+-+..+.+.+.++|+.+. ++++|+++...+.- -
T Consensus 190 rl~Ta-S--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~-~G~I~~~~~~~~~~~~~~v~~k~~~~~~ 265 (476)
T KOG0646|consen 190 RLYTA-S--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE-EGKIFQNLLFKLSGQSAGVNQKGRHEEN 265 (476)
T ss_pred eEEEe-c--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCC-cceEEeeehhcCCccccccccccccccc
Confidence 45543 3 467999999999999999999988877767777788999875 48889888766551 1
Q ss_pred EEEec--CCCce------eEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019103 184 EEFTH--QMKDG------WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 184 ~ti~~--~~peG------wGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
.+++. + .++ .+++.||..|..-|.++++.++|+...+.++++..
T Consensus 266 t~~~~~~G-h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 266 TQINVLVG-HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred ceeeeecc-ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 12222 2 222 45778999998888999999999999999988874
|
|
| >PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A | Back alignment and domain information |
|---|
Probab=95.16 E-value=3.1 Score=40.70 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=82.4
Q ss_pred eeEEE-ecCCE--EEEEcCCCCCCeEEEEECCCCcEEEEeccCC-------CeeEEEEEEeCCEEEEEE-eeCCEEEEEE
Q 019103 108 QGLLY-AENDT--LFESTGLYGRSSVRRVALETGKVEAINQMEG-------SYFGEGLTLLGEKLFQVT-WLQKTGFIYD 176 (346)
Q Consensus 108 qGL~~-~~d~~--LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-------~~FgeGit~~g~~LY~lt-w~~~~v~V~D 176 (346)
.+|.. ..+|+ |+.-... ....|.++|++++++++++++.. .++ |+....+.+|+.+ +....++++|
T Consensus 45 ~~l~~~~~~~~~yL~f~n~~-~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~--~~~~~~Dsi~l~~~~~~~~l~~~n 121 (333)
T PF13970_consen 45 YYLQSFSSDGKKYLYFLNNY-KSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPF--GFFQNLDSIFLFNSYAFPKLFLFN 121 (333)
T ss_dssp SSEEEEEETTEEEEEEEE-S-T--EEEEEETTTTEEEEEEE-BSSSTTB-TT-----EEESSSTTSEEEEGGGTEEEEE-
T ss_pred ccEEEEEcCCcEEEEEEcCC-CcceEEEEECCCCceeeeeeeeeECCCCccccc--cceEcCCceEEEecCCcceEEEEc
Confidence 35543 44564 4344431 24799999999999999998743 223 3444344444444 6789999999
Q ss_pred CCCCcEEEEEecC--CCceeEEe----------eCCCEEEEE---------C---CCCeEEEEeCCCCcEEEEEEeccCC
Q 019103 177 QNNLNKLEEFTHQ--MKDGWGLA----------TDGKVLFGS---------D---GSSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 177 ~~tl~~i~ti~~~--~peGwGLt----------~Dg~~LyvS---------d---Gs~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
..++++.+++.. ..+++... ..++.+|.+ + ..-.+.++|+++.++. .+.+....
T Consensus 122 -~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~-~~~l~~~~ 199 (333)
T PF13970_consen 122 -SQGEVLKKIDLEEEDLEFEPSEFPSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTKKVK-WLPLPYPD 199 (333)
T ss_dssp -TT--EEEEEE---TTS-------BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT--EE-EEEEE--S
T ss_pred -CCCeEEEEEecccCcccccccccccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCCeEE-EEeCCChH
Confidence 678899988863 12333211 123444553 1 1336889999998874 45542210
Q ss_pred e--e--e----eecee--eEe-eCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Q 019103 233 R--E--V----RNLNE--LEF-IKGEVWANVWQTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 233 ~--p--v----~~lNE--LE~-~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~ 273 (346)
. . + ....+ ..+ .+|+++.+.+.++.|.+-| .++.+ ..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~~~~~iyv~d-~~~~~-~~~~ 249 (333)
T PF13970_consen 200 KYQKYNINWDGGMFPSYSYNYFKGGKIIISFPADSEIYVYD-SNDSL-KKYS 249 (333)
T ss_dssp ------SSEEE---EEEEEET-TTTEEEEEETT-SEEEEES-SSS-E-EEEE
T ss_pred HhhhhccccCcceecceeEEEeeCCEEEEecCCCceEEEEC-CCCeE-EEEe
Confidence 0 0 0 00001 122 4689999999999999988 65555 4443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.32 Score=48.49 Aligned_cols=63 Identities=14% Similarity=-0.011 Sum_probs=42.8
Q ss_pred eeCC-EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC-CCcEEEEEE
Q 019103 243 FIKG-EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL-WPKLYEINL 319 (346)
Q Consensus 243 ~~~G-~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~-Wp~l~ev~l 319 (346)
..|+ +..++.-.+++|..-|.+ |+++..||.-.+. .+-.|.+|+|+.+-++|=- .=+++|+-+
T Consensus 195 iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~-------------n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS-------------NYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc-------------ccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 3454 444677778889999999 9999999883221 2346889998877777632 234555544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.91 E-value=1 Score=45.41 Aligned_cols=142 Identities=13% Similarity=0.095 Sum_probs=97.2
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEE-EEEEeCCEEEE---EEeeCCEEEEEECCCCcEEEEEecC-
Q 019103 116 DTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGE-GLTLLGEKLFQ---VTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~Fge-Git~~g~~LY~---ltw~~~~v~V~D~~tl~~i~ti~~~- 189 (346)
.+|.+. +.+ +|.++|+.+.|++..+.. +++++|. ++++...--|. ..-..+.|.+||..+++.+.+|+.-
T Consensus 98 ~RLvV~--Lee--~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~ 173 (391)
T KOG2110|consen 98 KRLVVC--LEE--SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHK 173 (391)
T ss_pred ceEEEE--Ecc--cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecC
Confidence 578888 323 699999999999999964 5777753 23333332233 3556899999999999999999852
Q ss_pred -CCceeEEeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCC
Q 019103 190 -MKDGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 190 -~peGwGLt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~ 264 (346)
.=.-.++++||..|-. ||-.--|.|++..+++.+-...=|. .++ ++--|.+. ++...+..-.+++|.+.-.+
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--~~~-~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--YPV-SIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc--eee-EEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 2366678899998877 5655578899988888765554443 232 23345555 45555555667777766443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.31 Score=50.91 Aligned_cols=120 Identities=14% Similarity=0.093 Sum_probs=85.9
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCe-eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSY-FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~-FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
+-|-|++.. .|+.+.+ +...|+.||.....-+... .....| -|.-+.+.+..|++....+.++.+||....+...
T Consensus 168 Rll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred EEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 446777665 4777777 4559999999876533332 122222 1444555788999999999999999999999999
Q ss_pred EEecCCC-ceeEEeeCCCEEEEECCCCeEEEEeCCCCc-EEEEEEec
Q 019103 185 EFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLK-VIRKDIVR 229 (346)
Q Consensus 185 ti~~~~p-eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~k-vi~~I~V~ 229 (346)
++.+..| .-.++.++|..|.+-+.-.+|++.|....+ .++.+.+.
T Consensus 246 ~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah 292 (673)
T KOG4378|consen 246 RLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH 292 (673)
T ss_pred eeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec
Confidence 9988644 556788999999887778899999975533 34444443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.24 Score=51.82 Aligned_cols=118 Identities=12% Similarity=0.169 Sum_probs=84.2
Q ss_pred CCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccC---CCeeEEEEEEeCCEEEEEEeeCCEEEEEECC
Q 019103 103 PRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQME---GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~---~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~ 178 (346)
+.+|.+---+.+||+ |+++ | ..++|.+||+++-...-...++ +.-++-.+.++.+..|. --.++.|.|+|..
T Consensus 464 rdnyiRSckL~pdgrtLivG-G--eastlsiWDLAapTprikaeltssapaCyALa~spDakvcFs-ccsdGnI~vwDLh 539 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVG-G--EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFS-CCSDGNIAVWDLH 539 (705)
T ss_pred cccceeeeEecCCCceEEec-c--ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeee-eccCCcEEEEEcc
Confidence 557777777888886 5554 6 4789999999976533333333 33345445555555554 4568999999999
Q ss_pred CCcEEEEEecCCCcee---EEeeCCCEEEEECCCCeEEEEeCCCCcEEEE
Q 019103 179 NLNKLEEFTHQMKDGW---GLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (346)
Q Consensus 179 tl~~i~ti~~~~peGw---GLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~ 225 (346)
+-.++++|.-- ++|. .+++||.+||.---+|+|.-+|.++.+....
T Consensus 540 nq~~VrqfqGh-tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 540 NQTLVRQFQGH-TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred cceeeecccCC-CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence 99999999842 4554 4889999999854499999999988776433
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.75 Score=45.38 Aligned_cols=149 Identities=19% Similarity=0.209 Sum_probs=101.4
Q ss_pred eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEe-eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeee
Q 019103 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLA-TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVR 236 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt-~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~ 236 (346)
.++.|.++.|. +.+.+||..+.+....+.+++|= .-.+ .|...+|+.+-+++|..+|..|.+. -.++.+..++.
T Consensus 24 ~~~~LLvssWD-gslrlYdv~~~~l~~~~~~~~pl-L~c~F~d~~~~~~G~~dg~vr~~Dln~~~~---~~igth~~~i~ 98 (323)
T KOG1036|consen 24 SSSDLLVSSWD-GSLRLYDVPANSLKLKFKHGAPL-LDCAFADESTIVTGGLDGQVRRYDLNTGNE---DQIGTHDEGIR 98 (323)
T ss_pred cCCcEEEEecc-CcEEEEeccchhhhhheecCCce-eeeeccCCceEEEeccCceEEEEEecCCcc---eeeccCCCceE
Confidence 35778888874 89999999999888888886421 1112 2567788888889999999998775 35555555654
Q ss_pred eceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE-ecCCCCc
Q 019103 237 NLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV-TGKLWPK 313 (346)
Q Consensus 237 ~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV-TGK~Wp~ 313 (346)
- +|+. .|.+.+.-| +.+|-++||..-.+++.++... -.+. .|--+++|.| |...--.
T Consensus 99 c---i~~~~~~~~vIsgsW-D~~ik~wD~R~~~~~~~~d~~k--------------kVy~--~~v~g~~LvVg~~~r~v~ 158 (323)
T KOG1036|consen 99 C---IEYSYEVGCVISGSW-DKTIKFWDPRNKVVVGTFDQGK--------------KVYC--MDVSGNRLVVGTSDRKVL 158 (323)
T ss_pred E---EEeeccCCeEEEccc-CccEEEEeccccccccccccCc--------------eEEE--EeccCCEEEEeecCceEE
Confidence 2 4544 788999999 8999999999977777775522 1233 3445788988 5555455
Q ss_pred EEEEEEe-eccccccCCCc
Q 019103 314 LYEINLR-EMKRERKDGFN 331 (346)
Q Consensus 314 l~ev~l~-~~~~~~~~~~~ 331 (346)
+|.++.- ...+.++.+|+
T Consensus 159 iyDLRn~~~~~q~reS~lk 177 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLK 177 (323)
T ss_pred EEEcccccchhhhccccce
Confidence 6666542 22244455543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=3.5 Score=41.38 Aligned_cols=218 Identities=13% Similarity=0.132 Sum_probs=120.8
Q ss_pred CCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEE----eccC---CCeeEEEEEEe-
Q 019103 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAI----NQME---GSYFGEGLTLL- 158 (346)
Q Consensus 87 ~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~----~~l~---~~~FgeGit~~- 158 (346)
++-...=.+...-+..+..|+.|.-.+|||.-+.+.. .++.++.|++...-.-.. ..+. .-...||.++.
T Consensus 32 g~~~l~g~~~~~stt~p~nf~kgckWSPDGSciL~~s--edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvyd 109 (406)
T KOG2919|consen 32 GPINLGGNVIAFSTTKPLNFLKGCKWSPDGSCILSLS--EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYD 109 (406)
T ss_pred cceeccCceEEeccCCchhhhccceeCCCCceEEeec--ccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEE
Confidence 3333334445555556788999999999997555544 567899987653211111 1111 11123344442
Q ss_pred ------------CCEEEEEEeeCCEEEEEECCCCcEEEEEec-------CCCceeEEeeCCCEEEEECCCCeEEEEeC-C
Q 019103 159 ------------GEKLFQVTWLQKTGFIYDQNNLNKLEEFTH-------QMKDGWGLATDGKVLFGSDGSSMLYQIDP-Q 218 (346)
Q Consensus 159 ------------g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~-------~~peGwGLt~Dg~~LyvSdGs~~l~vIDp-~ 218 (346)
..-||.++-+++-|-++|+-|++..+.+.. .+..-.+++|||..||.-. .+.|.++|+ .
T Consensus 110 y~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~R 188 (406)
T KOG2919|consen 110 YCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSR 188 (406)
T ss_pred EEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccC
Confidence 124666777789999999999999998852 1335567899999999854 468999998 4
Q ss_pred CCcE---EEEEEeccCCeeeeecee--eEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceee
Q 019103 219 TLKV---IRKDIVRYKGREVRNLNE--LEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLN 293 (346)
Q Consensus 219 T~kv---i~~I~V~~~G~pv~~lNE--LE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlN 293 (346)
+++- -.++.-+..|.. +-+.- +.+.+-+.+|---+.+.+=+-.-..++.+..+ ..+ .+.| -
T Consensus 189 pGr~c~vy~t~~~~k~gq~-giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll---------ggh---~gGv-T 254 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQK-GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL---------GGH---GGGV-T 254 (406)
T ss_pred CCCCCcchhhhhccccccc-ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---------ccc---CCCe-e
Confidence 4332 222222221110 00000 11112233332222333322222333322222 001 1111 1
Q ss_pred EEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019103 294 GIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 294 GIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
-+.|-++|++||+.-+..++|..=.+..
T Consensus 255 hL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred eEEeccCcCeecccccCCCeEEEEeehh
Confidence 2568999999999999999998777653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=2 Score=44.34 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=81.0
Q ss_pred EEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeE-----EeeCCCEEEEECCCCeEEEEeCCCCcEEEEE
Q 019103 153 EGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (346)
Q Consensus 153 eGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwG-----Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I 226 (346)
.|+..+. +..++..-.++.....|..+++.+.....+ ..+.+ +.|||-.+-.---++.|-++|......+++.
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccC
Confidence 3445543 344455555677777899999998888764 23333 5567654333224789999999999988888
Q ss_pred EeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCch
Q 019103 227 IVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNL 277 (346)
Q Consensus 227 ~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l 277 (346)
+... -|+. ++.|. |||-.|.--.+++|..-|....+-..+|.+++.
T Consensus 386 pght--~~vk---~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~ 432 (506)
T KOG0289|consen 386 PGHT--GPVK---AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEK 432 (506)
T ss_pred CCCC--Ccee---EEEeccCceEEEEEecCCeEEEEEehhhcccceeecccc
Confidence 8744 2443 56666 687666555667799999999998888877553
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=2.4 Score=42.19 Aligned_cols=149 Identities=13% Similarity=0.156 Sum_probs=83.0
Q ss_pred CCEEEEEcCCCCCCeEEEEECCC--CcEEEEeccCC-CeeEEEEEEeCCEEEEEEee-----------CCEEEEEECCCC
Q 019103 115 NDTLFESTGLYGRSSVRRVALET--GKVEAINQMEG-SYFGEGLTLLGEKLFQVTWL-----------QKTGFIYDQNNL 180 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~T--gkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~-----------~~~v~V~D~~tl 180 (346)
++.||+..|. +...+.++|+++ ++-....+++. ...+.+++..+++||+.--. .+.+++||+.+.
T Consensus 38 ~~~iyv~gG~-~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n 116 (376)
T PRK14131 38 NNTVYVGLGS-AGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN 116 (376)
T ss_pred CCEEEEEeCC-CCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence 6899998775 456788999874 33333334431 22345677789999997432 256999998765
Q ss_pred cEEEEEe-cCC-CceeE-EeeCCCEEEEECC----------------------------------------CCeEEEEeC
Q 019103 181 NKLEEFT-HQM-KDGWG-LATDGKVLFGSDG----------------------------------------SSMLYQIDP 217 (346)
Q Consensus 181 ~~i~ti~-~~~-peGwG-Lt~Dg~~LyvSdG----------------------------------------s~~l~vIDp 217 (346)
+-..--+ .+. ..|-. ++..+++||+-=| .+.+.+.||
T Consensus 117 ~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~ 196 (376)
T PRK14131 117 SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDP 196 (376)
T ss_pred EEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEEC
Confidence 4333111 111 12323 3325678888533 257999999
Q ss_pred CCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEec------CCCeE--EEEeCCCCe
Q 019103 218 QTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW------QTDCI--ARISHEDGV 267 (346)
Q Consensus 218 ~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~------~sn~I--~vID~~TG~ 267 (346)
++.+-...=+.... +... -.+...+++||+--- .++++ ..+|+++.+
T Consensus 197 ~t~~W~~~~~~p~~--~~~~-~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~ 251 (376)
T PRK14131 197 STNQWKNAGESPFL--GTAG-SAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLK 251 (376)
T ss_pred CCCeeeECCcCCCC--CCCc-ceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcc
Confidence 99887531111110 1110 024455788886321 12333 355776665
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.59 Score=46.70 Aligned_cols=173 Identities=20% Similarity=0.246 Sum_probs=99.5
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEEC-CCCcEEEEec-cCCCeeEE-E------EEEeCCEEEEEEeeCCEEEEEEC
Q 019103 108 QGLLYAEND-TLFESTGLYGRSSVRRVAL-ETGKVEAINQ-MEGSYFGE-G------LTLLGEKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl-~Tgkv~~~~~-l~~~~Fge-G------it~~g~~LY~ltw~~~~v~V~D~ 177 (346)
..|.|++|| +||-+ -.+.|++||+ .+|+--.... +-.+.||. | +.+..-+.+..--..+.+=+|.-
T Consensus 162 hsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~ 237 (406)
T KOG2919|consen 162 HSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND 237 (406)
T ss_pred eeEEecCCCCeEeec----ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEec
Confidence 489999999 57754 4579999999 6776433332 12222221 1 22234446665555677777777
Q ss_pred CCCcEEEEEecCCCceeE---EeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeecee-eEee---CCEEE
Q 019103 178 NNLNKLEEFTHQMKDGWG---LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE-LEFI---KGEVW 249 (346)
Q Consensus 178 ~tl~~i~ti~~~~peGwG---Lt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE-LE~~---~G~Ly 249 (346)
...+.+...- +...|.. ..+||++||+-- -+++|..+|-..-+. +|..-++.+...|. +-++ +|++.
T Consensus 238 ~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~L 312 (406)
T KOG2919|consen 238 DGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEIL 312 (406)
T ss_pred CCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCcee
Confidence 7777777664 2123322 346999999955 489999999764322 22222233333343 2222 35666
Q ss_pred EEecCCCeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019103 250 ANVWQTDCIARISHED-GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 250 aNv~~sn~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
|.--.+..|.|-|.++ |.-+... .+-.+.-||++++|-=.
T Consensus 313 asG~tdG~V~vwdlk~~gn~~sv~-------------~~~sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDLGNEVSVT-------------GNYSDTVNGVSLNPIMP 353 (406)
T ss_pred eccCCCccEEEEecCCCCCccccc-------------ccccccccceecCcccc
Confidence 6655566677777776 5411111 01235678888888533
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=2 Score=45.47 Aligned_cols=158 Identities=16% Similarity=0.052 Sum_probs=103.0
Q ss_pred cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEE-eeCCEEEEEECCC
Q 019103 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT-WLQKTGFIYDQNN 179 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~lt-w~~~~v~V~D~~t 179 (346)
|...- -|+++...+.++++.. .+-++++||..+|+-...+..... .+..+.....+.+. -.++.|.|.|..+
T Consensus 248 H~g~V--~~l~~~~~~~~lvsgS--~D~t~rvWd~~sg~C~~~l~gh~s---tv~~~~~~~~~~~sgs~D~tVkVW~v~n 320 (537)
T KOG0274|consen 248 HFGGV--WGLAFPSGGDKLVSGS--TDKTERVWDCSTGECTHSLQGHTS---SVRCLTIDPFLLVSGSRDNTVKVWDVTN 320 (537)
T ss_pred CCCCc--eeEEEecCCCEEEEEe--cCCcEEeEecCCCcEEEEecCCCc---eEEEEEccCceEeeccCCceEEEEeccC
Confidence 44444 4888874234444433 346999999999998888774432 33444444444443 5689999999999
Q ss_pred CcEEEEEe-cCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-EEEEEecCCCe
Q 019103 180 LNKLEEFT-HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQTDC 257 (346)
Q Consensus 180 l~~i~ti~-~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G-~LyaNv~~sn~ 257 (346)
++.+.++. +. ..=-.+.-++..++..--+.+|.++|+.+++.++++.=.. ..+.- + +.++ ....+--.+..
T Consensus 321 ~~~l~l~~~h~-~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~--~~V~s---l-~~~~~~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 321 GACLNLLRGHT-GPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT--GRVYS---L-IVDSENRLLSGSLDTT 393 (537)
T ss_pred cceEEEecccc-ccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc--ceEEE---E-EecCcceEEeeeeccc
Confidence 99999988 42 1212356678888775556699999999999988877632 23321 2 2333 33333334677
Q ss_pred EEEEeCCCC-eEEEEE
Q 019103 258 IARISHEDG-VVLGWV 272 (346)
Q Consensus 258 I~vID~~TG-~Vv~~I 272 (346)
|-+-|..++ +.+.++
T Consensus 394 IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTL 409 (537)
T ss_pred eEeecCCchhhhhhhh
Confidence 888899988 555544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.96 Score=48.07 Aligned_cols=171 Identities=12% Similarity=0.147 Sum_probs=106.7
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe----------ccCC-------------
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN----------QMEG------------- 148 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~----------~l~~------------- 148 (346)
.+++++.+.+.... .-+-+++||+-..++|-|. -+|.+||++.-.+.-.- .+..
T Consensus 41 rieLiQdfe~p~as--t~ik~s~DGqY~lAtG~YK-P~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~ 117 (703)
T KOG2321|consen 41 RIELIQDFEMPTAS--TRIKVSPDGQYLLATGTYK-PQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRT 117 (703)
T ss_pred HHHHHHhcCCcccc--ceeEecCCCcEEEEecccC-CceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCce
Confidence 46667777773333 6788899999888999988 49999999864322111 1110
Q ss_pred --------C-------eeEEEEEEeC--CEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCC-EEEEECC-C
Q 019103 149 --------S-------YFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGK-VLFGSDG-S 209 (346)
Q Consensus 149 --------~-------~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~-~LyvSdG-s 209 (346)
. -||.-+.++- -.||.+. -...||.++.+.++-+..|.+..++=|.+.-+.- -|++.-+ +
T Consensus 118 IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~ 196 (703)
T KOG2321|consen 118 IEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED 196 (703)
T ss_pred eeehhhcCeeeeeecCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccC
Confidence 0 1343344331 2355443 3678999999999999999887566666665543 3555444 7
Q ss_pred CeEEEEeCCCCcEEEEEEeccC-----C-eeeeeceeeEeeCCEEEEEecC-CCeEEEEeCCCC
Q 019103 210 SMLYQIDPQTLKVIRKDIVRYK-----G-REVRNLNELEFIKGEVWANVWQ-TDCIARISHEDG 266 (346)
Q Consensus 210 ~~l~vIDp~T~kvi~~I~V~~~-----G-~pv~~lNELE~~~G~LyaNv~~-sn~I~vID~~TG 266 (346)
+.|-++||.+...++++.+... | ....-+..+.|.|.-|-+++.. +..|.+-|..+-
T Consensus 197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 8999999999999999887653 1 1111233466666334444433 334555554443
|
|
| >PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats | Back alignment and domain information |
|---|
Probab=94.31 E-value=8 Score=40.89 Aligned_cols=166 Identities=17% Similarity=0.248 Sum_probs=102.4
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe--e--------------------CCEEEEEECCCCcEE--
Q 019103 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW--L--------------------QKTGFIYDQNNLNKL-- 183 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw--~--------------------~~~v~V~D~~tl~~i-- 183 (346)
-.|..+|+++++......+-+. ++.+=...+.||++.. . .-.+..|+.+.++..
T Consensus 186 ~~i~s~dl~~~~~~~~~~~~g~--~~~vY~S~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~~~T~I~kf~~~~~~~~y~ 263 (521)
T PF09826_consen 186 TTITSIDLDPDKASDSTSVLGS--GGNVYMSENNLYIASNRYYYEPYAMMRFEASAEPEESNESTTIYKFALDGGKIEYV 263 (521)
T ss_pred EEEEEEeCCCCCccceeEEEec--CCEEEEeCCcEEEEEecccccccccchhccccccccCCCceEEEEEEccCCcEEEE
Confidence 3667788877776555543221 3455667788988743 2 134667776654432
Q ss_pred EEEecC--CCceeEEeeCCCEEEE--EC----------CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEE
Q 019103 184 EEFTHQ--MKDGWGLATDGKVLFG--SD----------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW 249 (346)
Q Consensus 184 ~ti~~~--~peGwGLt~Dg~~Lyv--Sd----------Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Ly 249 (346)
++..++ .-.-+.|+.-++.|-| +. ..|.|+++| +++++++++.--..|+.+. ..-+.+.+.|
T Consensus 264 ~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD-~~L~~vG~l~~la~gE~Iy---svRF~Gd~~Y 339 (521)
T PF09826_consen 264 GSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLD-EDLKIVGSLEGLAPGERIY---SVRFMGDRAY 339 (521)
T ss_pred EEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEEC-CCCcEeEEccccCCCceEE---EEEEeCCeEE
Confidence 333332 1122223322333322 11 378999999 8999999997433455443 3456788999
Q ss_pred -EEecCCCeEEEEeCCC---CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019103 250 -ANVWQTDCIARISHED---GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 250 -aNv~~sn~I~vID~~T---G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
|+--+.|-+.+||..+ =+|++.+.+++...=|.. -+.+-|=||-.+.+.+
T Consensus 340 ~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP---~~e~~LlGiG~~~~~~ 393 (521)
T PF09826_consen 340 LVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHP---YDENHLLGIGKDTDED 393 (521)
T ss_pred EEEEeecCceEEEECCCCCCCceeeEEECccchhceeE---CCCCeEEEEcccCccc
Confidence 5777889999998665 789999998776532211 2456777888877665
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.22 E-value=5.5 Score=41.33 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=71.1
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEE----EE------e--cc--CC-CeeEEEEEE--eC-CE
Q 019103 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVE----AI------N--QM--EG-SYFGEGLTL--LG-EK 161 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~----~~------~--~l--~~-~~FgeGit~--~g-~~ 161 (346)
+|.... -++++++|+....+.+ .++.|..|+..||+.. .+ . ++ +. .+..|-+++ .. ++
T Consensus 140 ~H~~s~--~~vals~d~~~~fsas--k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 140 KHQLSV--TSVALSPDDKRVFSAS--KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred cccCcc--eEEEeeccccceeecC--CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 465555 6999998885444445 4569999999999844 22 1 11 11 233444444 23 44
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEee--CCCEEEEECCCCeEEEEeCCC
Q 019103 162 LFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLAT--DGKVLFGSDGSSMLYQIDPQT 219 (346)
Q Consensus 162 LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~--Dg~~LyvSdGs~~l~vIDp~T 219 (346)
.++.-..++.+.|+|.+|++.++.++.-...=.+|+. ....||.+--+..|.+++.+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH
Confidence 5555677888889999999999998753223334443 345677754444455544433
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.12 E-value=1.2 Score=45.85 Aligned_cols=157 Identities=16% Similarity=0.109 Sum_probs=93.2
Q ss_pred EEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcEEEEE
Q 019103 110 LLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEEF 186 (346)
Q Consensus 110 L~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~i~ti 186 (346)
..|+||| +|..+.-..|...|..+|+.++...+-.......-...++++|+.|+-++-+++ .++++|++...+ .++
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~ri 321 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRL 321 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEe
Confidence 3567888 455555556999999999999884442222211113345678888776655544 599999887665 555
Q ss_pred ecC--CCceeEEeeCCCEEEEEC---CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE--eeCCE--EEEEecCCCe
Q 019103 187 THQ--MKDGWGLATDGKVLFGSD---GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE--FIKGE--VWANVWQTDC 257 (346)
Q Consensus 187 ~~~--~peGwGLt~Dg~~LyvSd---Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE--~~~G~--LyaNv~~sn~ 257 (346)
... ...--..+|||+++.+.. |.-.|.+.|+++..-++....+. +||.. ..||+ +|...+..+.
T Consensus 322 T~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~-------~~e~ps~~~ng~~i~~~s~~~~~~ 394 (425)
T COG0823 322 TFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY-------LNESPSWAPNGRMIMFSSGQGGGS 394 (425)
T ss_pred eccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc-------cCCCCCcCCCCceEEEeccCCCCc
Confidence 432 111224789999876633 34457778876655433333322 22321 22443 6666666666
Q ss_pred EEEEeCCCCeEEEEEEC
Q 019103 258 IARISHEDGVVLGWVLL 274 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l 274 (346)
+..--..+|++...+.+
T Consensus 395 ~l~~~s~~g~~~~~~~~ 411 (425)
T COG0823 395 VLSLVSLDGRVSRPLPL 411 (425)
T ss_pred eEEEeeccceeEEEEec
Confidence 66666677777665533
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.92 Score=46.87 Aligned_cols=177 Identities=12% Similarity=0.106 Sum_probs=110.5
Q ss_pred CCCCeEEEEECCCCcE-EEEeccCC-CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE-----EecCCC-ceeEE
Q 019103 125 YGRSSVRRVALETGKV-EAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE-----FTHQMK-DGWGL 196 (346)
Q Consensus 125 yg~s~V~~iDl~Tgkv-~~~~~l~~-~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t-----i~~~~p-eGwGL 196 (346)
+| ...+||+.+++- ...+.+.. ..=+..+-+....++...-.++++-++|...+...++ +++... .---+
T Consensus 300 ~G--~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF 377 (498)
T KOG4328|consen 300 VG--NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF 377 (498)
T ss_pred cc--ceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE
Confidence 46 788899988764 33333322 2212223334455666667788899999988876664 333211 12237
Q ss_pred eeCCCEEEEECCCCeEEEEeC----CCCcEEEEEEecc-CCeeeeece-eeEeeCCEEEEEecCCCeEEEEeCCCCeEEE
Q 019103 197 ATDGKVLFGSDGSSMLYQIDP----QTLKVIRKDIVRY-KGREVRNLN-ELEFIKGEVWANVWQTDCIARISHEDGVVLG 270 (346)
Q Consensus 197 t~Dg~~LyvSdGs~~l~vIDp----~T~kvi~~I~V~~-~G~pv~~lN-ELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~ 270 (346)
+|+|..|..++.+++|.++|. +......+|.=.. .|+=+..+- ++.+....|++... ...|=+||...|+.+.
T Consensus 378 SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~-~r~IDv~~~~~~q~v~ 456 (498)
T KOG4328|consen 378 SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY-PRPIDVFDGNGGQMVC 456 (498)
T ss_pred cCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc-CcceeEEcCCCCEEee
Confidence 899999777888999999998 5566666665432 233111111 23333445666664 6669999999999777
Q ss_pred EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 271 WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 271 ~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
.+-.+.+. .++-=++++|-++.+.-.|-..+++|
T Consensus 457 el~~P~~~-----------tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 457 ELHDPESS-----------TIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred eccCcccc-----------ccccceeecccccceeccCCccceEE
Confidence 75332221 24555789998887777777777777
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.98 E-value=3 Score=43.77 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=119.8
Q ss_pred eeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
.-+.++++|. |-+++. .+.|.+||..+.|-+..+.. .... .|.-..+..+...--+++.+..+|....+...+
T Consensus 221 tSv~ws~~G~~LavG~~---~g~v~iwD~~~~k~~~~~~~~h~~r--vg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 221 TSVKWSPDGSHLAVGTS---DGTVQIWDVKEQKKTRTLRGSHASR--VGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred EEEEECCCCCEEEEeec---CCeEEEEehhhccccccccCCcCce--eEEEeccCceEEEecCCCcEEEEEEecchhhhh
Confidence 4667777774 555543 45999999999887777766 3333 344555677777778889999999887766665
Q ss_pred -Ee-cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC--CCeEEE
Q 019103 186 -FT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ--TDCIAR 260 (346)
Q Consensus 186 -i~-~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~--sn~I~v 260 (346)
.. +. .--|+..++|+..|-.-.-+|.++++|..+.+.+.++.-.. -.+. ...+.+.-.-|.|.=.. +.+|-.
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~--aAVK-A~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT--AAVK-ALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccc--eeee-EeeeCCCccCceEEcCCCcccEEEE
Confidence 22 11 12466677888765443338999999986655554444322 1221 11222223344444333 335777
Q ss_pred EeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019103 261 ISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 261 ID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
=|+.+|+-+..+|.. .....++|++..++|..|...-..
T Consensus 373 wn~~~g~~i~~vdtg--------------sQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 373 WNTNTGARIDSVDTG--------------SQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred EEcCCCcEecccccC--------------CceeeEEEcCCCCEEEEecCCCCC
Confidence 788899988888662 245679999999999999887765
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.84 Score=49.63 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=94.5
Q ss_pred eEEEEEEecCCCCcceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
-+=++.+.| ..|...++|.| |++.|+|..+.| +|+.|+....+|..-.++..-.=+.-..++|+...+.+. .+.
T Consensus 400 ~~CL~~F~H--ndfVTcVaFnPvDDryFiSGSLD~--KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~-~G~ 474 (712)
T KOG0283|consen 400 KECLKVFSH--NDFVTCVAFNPVDDRYFISGSLDG--KVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTF-NGY 474 (712)
T ss_pred cceeeEEec--CCeeEEEEecccCCCcEeeccccc--ceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEe-ccE
Confidence 456788888 67889999997 558999988766 999999999999888888755444555556665555554 589
Q ss_pred EEEEECCCCcEEEEEecC------CC----ceeEEee-CCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019103 172 GFIYDQNNLNKLEEFTHQ------MK----DGWGLAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~------~p----eGwGLt~-Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
..+|++..++...++.+- .. -|.-..| +-+++.|+--+++|.++|..+.+++.+.+
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 999999999988877531 11 2333332 34467776668899999997766655544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.69 Score=47.25 Aligned_cols=194 Identities=14% Similarity=0.134 Sum_probs=125.4
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECC
Q 019103 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~ 178 (346)
.||..- .++.++.+|+..+|.. +...|..|++.-..|.....-. ...-...+++ ++--|+.--.++++.+.|..
T Consensus 136 aHDs~V--r~m~ws~~g~wmiSgD--~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 136 AHDSPV--RTMKWSHNGTWMISGD--KGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred hhcccc--eeEEEccCCCEEEEcC--CCceEEecccchhhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEecc
Confidence 365333 7999998898888865 4469999998866543333221 2222222333 56678887889999999976
Q ss_pred CCcEEEEEecCCCceeEEee----CCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEe
Q 019103 179 NLNKLEEFTHQMKDGWGLAT----DGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (346)
Q Consensus 179 tl~~i~ti~~~~peGwGLt~----Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv 252 (346)
--+.-..+ .+.||-+.. ..+-|++|-| ++.|.++||++.+-+.++.+..+ -+. ++.+- +|-..++.
T Consensus 211 ~~kee~vL---~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl---~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 211 MPKEERVL---RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVL---AVKFNPNGNWLLTG 282 (464)
T ss_pred CCchhhee---ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEE---EEEEcCCCCeeEEc
Confidence 55554444 257888643 3677888765 77999999999999888877542 221 24443 44444555
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
-.+..+-+.|..+-+-+-++ + + -..-...++|.|-..-||++|...+.++-=.+
T Consensus 283 skD~~~kv~DiR~mkEl~~~-----r------~--Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 283 SKDQSCKVFDIRTMKELFTY-----R------G--HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred cCCceEEEEehhHhHHHHHh-----h------c--chhhheeeccccccccceeeccCCCceEEEec
Confidence 55556777777655422222 1 0 01234568999999999999999988875544
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.8 Score=44.48 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=96.2
Q ss_pred cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCC-EEEEEEeeCCEEEEEECC
Q 019103 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGE-KLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~-~LY~ltw~~~~v~V~D~~ 178 (346)
|+..-| +++|.+||.|..|.|+ ++.=++||+.||+-+-.+. --+..|+ ++...+ .....--.++++-|.|..
T Consensus 302 Hs~~v~--~iaf~~DGSL~~tGGl--D~~~RvWDlRtgr~im~L~gH~k~I~~--V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 302 HSKGVF--SIAFQPDGSLAATGGL--DSLGRVWDLRTGRCIMFLAGHIKEILS--VAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred cccccc--eeEecCCCceeeccCc--cchhheeecccCcEEEEecccccceee--EeECCCceEEeecCCCCcEEEeeec
Confidence 444554 8999999999999884 5688899999998544432 1234455 344433 233334568999999999
Q ss_pred CCcEEEEEecC--CCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecC
Q 019103 179 NLNKLEEFTHQ--MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (346)
Q Consensus 179 tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~ 254 (346)
-.+.+-+||.- .-...-+.|+.+...+|-+ ++++-++.+.++..++++.= -.++-+. +++. ||...++.-.
T Consensus 376 ~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG-He~kV~s----~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 376 MRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG-HEGKVIS----LDISPDSQAIATSSF 450 (459)
T ss_pred ccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC-CccceEE----EEeccCCceEEEecc
Confidence 99998888842 1133345665566566554 99999999999998766543 2334333 4443 5556666555
Q ss_pred CCeE
Q 019103 255 TDCI 258 (346)
Q Consensus 255 sn~I 258 (346)
++++
T Consensus 451 DRT~ 454 (459)
T KOG0272|consen 451 DRTI 454 (459)
T ss_pred Ccee
Confidence 5544
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.74 E-value=3.7 Score=43.39 Aligned_cols=141 Identities=11% Similarity=0.009 Sum_probs=95.5
Q ss_pred CCCeEEEEECCCCcEEEEeccCCC------eeEEEEEEe----------------CCE-EEEEEeeCCEEEEEECCCCcE
Q 019103 126 GRSSVRRVALETGKVEAINQMEGS------YFGEGLTLL----------------GEK-LFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~------~FgeGit~~----------------g~~-LY~ltw~~~~v~V~D~~tl~~ 182 (346)
++..+++||.+++++.....--.+ +-.-|+... ++. ..++--..+.++.|+...+++
T Consensus 13 ~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~i 92 (541)
T KOG4547|consen 13 GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEI 92 (541)
T ss_pred CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeE
Confidence 446999999999998666522111 111123222 122 445556679999999999999
Q ss_pred EEEEecC-CCceeEEeeCC---CEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeE
Q 019103 183 LEEFTHQ-MKDGWGLATDG---KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCI 258 (346)
Q Consensus 183 i~ti~~~-~peGwGLt~Dg---~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I 258 (346)
..++..+ .+++..-.-++ ..+|-.+++-++-.|++.+.++++....... ...++--..||.+.+.- +..|
T Consensus 93 t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~----~~~sl~is~D~~~l~~a--s~~i 166 (541)
T KOG4547|consen 93 TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP----LVSSLCISPDGKILLTA--SRQI 166 (541)
T ss_pred EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC----ccceEEEcCCCCEEEec--cceE
Confidence 9999865 34444433333 4677777889999999999999988888542 12233222367666542 7889
Q ss_pred EEEeCCCCeEEEEE
Q 019103 259 ARISHEDGVVLGWV 272 (346)
Q Consensus 259 ~vID~~TG~Vv~~I 272 (346)
.++|.+|++|+.+.
T Consensus 167 k~~~~~~kevv~~f 180 (541)
T KOG4547|consen 167 KVLDIETKEVVITF 180 (541)
T ss_pred EEEEccCceEEEEe
Confidence 99999999998776
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.8 Score=46.41 Aligned_cols=161 Identities=10% Similarity=0.041 Sum_probs=100.4
Q ss_pred EEEecCCE-EEEEcCCCCCCeEEEEECCCC----cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC---Cc
Q 019103 110 LLYAENDT-LFESTGLYGRSSVRRVALETG----KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN---LN 181 (346)
Q Consensus 110 L~~~~d~~-LyeStGlyg~s~V~~iDl~Tg----kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t---l~ 181 (346)
..++++++ ++++++ ..+..++|.+.. |......++.++++.-+.-....+-++ -+.+.++-||.-. +.
T Consensus 68 ~~~s~~~~llAv~~~---~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~-dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATS---SKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVA-DKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccCCCceEEEEEeC---CCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEE-eecCCceeeeeecccccC
Confidence 34556666 455554 346556665543 455556778888764333333333333 3455555555433 22
Q ss_pred EEEEEec-CCCceeEEeeCCCEEEEECCCCeEEEEe-CCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEE
Q 019103 182 KLEEFTH-QMKDGWGLATDGKVLFGSDGSSMLYQID-PQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIA 259 (346)
Q Consensus 182 ~i~ti~~-~~peGwGLt~Dg~~LyvSdGs~~l~vID-p~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~ 259 (346)
..-..-+ .|=.-..+++|++++.++|.+..|.+.. |++| ++.+.-.|. + .+..-|+..+++....-..+++|-
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-~IesfclGH--~--eFVS~isl~~~~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCLGH--K--EFVSTISLTDNYLLLSGSGDKTLR 218 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-chhhhcccc--H--hheeeeeeccCceeeecCCCCcEE
Confidence 2111111 1335567899999999999999999998 5554 334444432 1 134456777888777777799999
Q ss_pred EEeCCCCeEEEEEECCchhh
Q 019103 260 RISHEDGVVLGWVLLPNLRE 279 (346)
Q Consensus 260 vID~~TG~Vv~~I~l~~l~~ 279 (346)
+=|.++|+.+.+.|++.+..
T Consensus 219 ~Wd~~sgk~L~t~dl~s~~~ 238 (390)
T KOG3914|consen 219 LWDITSGKLLDTCDLSSLVI 238 (390)
T ss_pred EEecccCCcccccchhHhhh
Confidence 99999999999998876653
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.27 Score=49.43 Aligned_cols=179 Identities=18% Similarity=0.135 Sum_probs=120.0
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE-eCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~-~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
.|.++ +...+| |+ .+++|.+||..+...+..+. +.. |--+.+ ..+++.+.--.+.+|-|.|-+|++.++++-
T Consensus 202 ClQYD--D~kiVS-Gl-rDnTikiWD~n~~~c~~~L~-GHt--GSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 202 CLQYD--DEKIVS-GL-RDNTIKIWDKNSLECLKILT-GHT--GSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred EEEec--chhhhc-cc-ccCceEEeccccHHHHHhhh-cCC--CcEEeeeccceEEEecCCCceEEEEeccCCchhhHHh
Confidence 44553 334455 44 55799999998765443332 111 222333 356788887888999999999999999876
Q ss_pred cCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE--EEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCC
Q 019103 188 HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV--IRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHED 265 (346)
Q Consensus 188 ~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv--i~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~T 265 (346)
+--..-.+|-...+.++.+..+.++.|+|...-.. .+++-||- + ...|-.+|.+.+|. +--.+.+|-+-|+.|
T Consensus 275 hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH--r--AaVNvVdfd~kyIV-sASgDRTikvW~~st 349 (499)
T KOG0281|consen 275 HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH--R--AAVNVVDFDDKYIV-SASGDRTIKVWSTST 349 (499)
T ss_pred hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhh--h--hheeeeccccceEE-EecCCceEEEEeccc
Confidence 53223445666677777666778888888554332 23444432 1 24566777777554 444578899999999
Q ss_pred CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 266 GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 266 G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
++.+.+++- ---|||--.-.++|.|.|--..+|-
T Consensus 350 ~efvRtl~g----------------HkRGIAClQYr~rlvVSGSSDntIR 383 (499)
T KOG0281|consen 350 CEFVRTLNG----------------HKRGIACLQYRDRLVVSGSSDNTIR 383 (499)
T ss_pred eeeehhhhc----------------ccccceehhccCeEEEecCCCceEE
Confidence 999988843 1268898888999999999887753
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=93.56 E-value=1.2 Score=48.21 Aligned_cols=149 Identities=14% Similarity=0.127 Sum_probs=106.5
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEE-EEEeCCEEEEEEee-CCEEEEEECCCCcEEEEEe
Q 019103 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG-LTLLGEKLFQVTWL-QKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 110 L~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeG-it~~g~~LY~ltw~-~~~v~V~D~~tl~~i~ti~ 187 (346)
+.|.|-|.-|.|++ ++.+-+.|..+..+-++...=.-. -.+ +..+.+.-|++|.- ++.|-+.|..++..+.-|.
T Consensus 499 V~F~P~GyYFatas--~D~tArLWs~d~~~PlRifaghls--DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 499 VQFAPRGYYFATAS--HDQTARLWSTDHNKPLRIFAGHLS--DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred EEecCCceEEEecC--CCceeeeeecccCCchhhhccccc--ccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec
Confidence 45778888888877 667888998887654333311111 123 56677889999865 5679999999999999996
Q ss_pred cC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCC
Q 019103 188 HQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 188 ~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~ 264 (346)
-. .=.-..++|+|++|--.+.++.|.++|..+.+.+....=. -...+-|+|- +|.+.|....+|.|.+=|..
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-----t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-----TGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-----cCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 32 1256678999999888888999999999998876544332 1233446665 78888888888888888766
Q ss_pred CCe
Q 019103 265 DGV 267 (346)
Q Consensus 265 TG~ 267 (346)
.-.
T Consensus 650 ~~~ 652 (707)
T KOG0263|consen 650 KVI 652 (707)
T ss_pred hhc
Confidence 543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=5.5 Score=43.02 Aligned_cols=219 Identities=15% Similarity=0.177 Sum_probs=119.0
Q ss_pred eeeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCC---eeEEEEEEeCCEEEEE
Q 019103 91 YTIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAIN-QMEGS---YFGEGLTLLGEKLFQV 165 (346)
Q Consensus 91 ~t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~---~FgeGit~~g~~LY~l 165 (346)
|.|+-+-.+-....-+.+--+++|||. +-.++- -+-+|.++..+..-.+..+ .++.. --..-++.++++++.+
T Consensus 369 ~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~--~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 369 YNYIHLLKLFTKEKENISCAAISPDGNLIAISTV--SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLV 446 (691)
T ss_pred cChhhheeeecCCccceeeeccCCCCCEEEEeec--cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEE
Confidence 345555555544445557778889985 445655 3335555555542222222 22211 1123456678888887
Q ss_pred EeeCCEEEEEECCC--CcEEEEEecC-C---CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeece
Q 019103 166 TWLQKTGFIYDQNN--LNKLEEFTHQ-M---KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN 239 (346)
Q Consensus 166 tw~~~~v~V~D~~t--l~~i~ti~~~-~---peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lN 239 (346)
.-....+..++..+ ++.+..+.-. . ---...++||+++-++++...|+++|.+|++..-.+ +.-+ .++.. +
T Consensus 447 s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~-~rln-~~vTa-~ 523 (691)
T KOG2048|consen 447 SKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLK-VRLN-IDVTA-A 523 (691)
T ss_pred ecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecch-hccC-cceee-e
Confidence 76677777877664 4444444321 1 133457899999999999999999999997764333 1111 11110 0
Q ss_pred eeE-eeCCEEEEEecCCCeEEEEeCCCCeEEEEEEC--CchhhhhhhccCCCCceeeEEEEeCCCC-EEEEecCCCCcEE
Q 019103 240 ELE-FIKGEVWANVWQTDCIARISHEDGVVLGWVLL--PNLRERLVAAGYNGIDVLNGIAWDSNRN-RIFVTGKLWPKLY 315 (346)
Q Consensus 240 ELE-~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l--~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~LfVTGK~Wp~l~ 315 (346)
... +..++|-++- -.|.|...|.+..++..|--. .++.. ..+ ....--+||-+||+.. +++|=+..|-.+.
T Consensus 524 ~~~~~~~~~lvvat-s~nQv~efdi~~~~l~~ws~~nt~nlpk-~~~---~l~~~~~gisfd~~n~s~~~~~~a~w~~~i 598 (691)
T KOG2048|consen 524 AFSPFVRNRLVVAT-SNNQVFEFDIEARNLTRWSKNNTRNLPK-EPK---TLIPGIPGISFDPKNSSRFIVYDAHWSCLI 598 (691)
T ss_pred eccccccCcEEEEe-cCCeEEEEecchhhhhhhhhcccccccc-Chh---hcCCCCceEEeCCCCccEEEEEcCcEEEEE
Confidence 011 2233444433 244555555544443322211 01110 011 1123457999998765 7888888887776
Q ss_pred EEEE
Q 019103 316 EINL 319 (346)
Q Consensus 316 ev~l 319 (346)
+-.+
T Consensus 599 d~~~ 602 (691)
T KOG2048|consen 599 DFSL 602 (691)
T ss_pred ecCC
Confidence 6544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=3 Score=41.78 Aligned_cols=190 Identities=12% Similarity=0.122 Sum_probs=109.8
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEeeCCEEEEEEC---C--
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQ---N-- 178 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~~~~v~V~D~---~-- 178 (346)
.-++-+-+.+++..+-|+. .+..|-.||++ |+++..+.... ...-..+++.|..|-++ -..-.|.|+.+ +
T Consensus 188 v~~i~iGiA~~~k~imsas--~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~-gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 188 VDIINIGIAGNAKYIMSAS--LDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVS-GFTPDVKVWEPIFTKDG 263 (420)
T ss_pred cceEEEeecCCceEEEEec--CCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEe-cCCCCceEEEEEeccCc
Confidence 3345555555556667766 45699999999 99999986532 22233456665555444 44455666553 2
Q ss_pred CCcEEEE-Eec-C--CCce-eEEeeCCCEEEEECCCCeEEEEeCCC-------CcEEEE--EEecc-CCeeeeeceeeEe
Q 019103 179 NLNKLEE-FTH-Q--MKDG-WGLATDGKVLFGSDGSSMLYQIDPQT-------LKVIRK--DIVRY-KGREVRNLNELEF 243 (346)
Q Consensus 179 tl~~i~t-i~~-~--~peG-wGLt~Dg~~LyvSdGs~~l~vIDp~T-------~kvi~~--I~V~~-~G~pv~~lNELE~ 243 (346)
+++.+.+ |.. + +.-- .+++++..++.....+.+..++|+.- -+++++ ++... .+.|+. ||.
T Consensus 264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~R----L~l 339 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVR----LEL 339 (420)
T ss_pred chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceE----EEe
Confidence 3333332 332 1 1122 23677777777654455555555421 111111 22222 345664 554
Q ss_pred e-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 244 I-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 244 ~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
- +|.++|... ..++-+...++|++..+. .... +...-.|+|+++|+.+--.|...-.++
T Consensus 340 sP~g~~lA~s~-gs~l~~~~se~g~~~~~~-----e~~h-------~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 340 SPSGDSLAVSF-GSDLKVFASEDGKDYPEL-----EDIH-------STTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred CCCCcEEEeec-CCceEEEEcccCccchhH-----HHhh-------cCceeeEEecCCCcEEeeecceeeeee
Confidence 3 788887765 667889999999875443 2111 224566999999998888887765544
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=93.43 E-value=5.1 Score=42.22 Aligned_cols=129 Identities=17% Similarity=0.214 Sum_probs=81.8
Q ss_pred cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
|...-| ||+..|+..+|.++|. +..|+.|+ ..|++-...+...--..++.+.| ...+---++.-+|+|.++
T Consensus 367 h~delw--gla~hps~~q~~T~gq--dk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~- 437 (626)
T KOG2106|consen 367 HGDELW--GLATHPSKNQLLTCGQ--DKHVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTET- 437 (626)
T ss_pred ccccee--eEEcCCChhheeeccC--cceEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEeccc-
Confidence 334665 9999998889999995 44999999 66676666665443233444445 444445578899999988
Q ss_pred cEEEEEecCCCc---eeEEeeCCCEEEEECCCC--eEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019103 181 NKLEEFTHQMKD---GWGLATDGKVLFGSDGSS--MLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 181 ~~i~ti~~~~pe---GwGLt~Dg~~LyvSdGs~--~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
+.+-++... .| -+..+|||..|-|.--++ .||.+|..-++..+-=.. .|.|+. .|++.
T Consensus 438 ~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~it---hLDwS 500 (626)
T KOG2106|consen 438 QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SGSPIT---HLDWS 500 (626)
T ss_pred ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cCceeE---Eeeec
Confidence 555555543 23 344689999998865444 666777665554321111 345655 35554
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.42 E-value=6.9 Score=42.82 Aligned_cols=196 Identities=12% Similarity=0.094 Sum_probs=118.4
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC
Q 019103 110 LLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ 189 (346)
Q Consensus 110 L~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~ 189 (346)
|..+.+ .++.|+.+ +-+|+.|++...+=+....-..=.=...+.+.+++.|+.-=.++++-+.+..+.+++.-.+..
T Consensus 375 lSWSKn-~fLLSSSM--DKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~ 451 (712)
T KOG0283|consen 375 LSWSKN-NFLLSSSM--DKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR 451 (712)
T ss_pred cccccC-CeeEeccc--cccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh
Confidence 344443 34556674 459999999977644443222100012222334555555555666666666665555544442
Q ss_pred -CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC-Ce--eeeeceeeEeeC---CEEEEEecCCCeEEEEe
Q 019103 190 -MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK-GR--EVRNLNELEFIK---GEVWANVWQTDCIARIS 262 (346)
Q Consensus 190 -~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~-G~--pv~~lNELE~~~---G~LyaNv~~sn~I~vID 262 (346)
+--..-++|||+..+|--=.+..+++|+...+......|... ++ .-..+--|++.- .+|.|+- .+..|-++|
T Consensus 452 ~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrIRI~d 530 (712)
T KOG0283|consen 452 DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRIRIYD 530 (712)
T ss_pred hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec-CCCceEEEe
Confidence 223345678898887744456788888888888887777543 11 111233466663 3788876 477899999
Q ss_pred CCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019103 263 HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 263 ~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
..+-+++..+. + .....-..-..|+.||+.+..+. ....+|-=++.+
T Consensus 531 ~~~~~lv~KfK-----G------~~n~~SQ~~Asfs~Dgk~IVs~s-eDs~VYiW~~~~ 577 (712)
T KOG0283|consen 531 GRDKDLVHKFK-----G------FRNTSSQISASFSSDGKHIVSAS-EDSWVYIWKNDS 577 (712)
T ss_pred ccchhhhhhhc-----c------cccCCcceeeeEccCCCEEEEee-cCceEEEEeCCC
Confidence 98888877663 1 11122334567899999888777 667777766643
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.23 Score=40.47 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=31.9
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
+..+.+-||+|+++.--++ +| ..|||||+++|++.++|+=-.=.+|.+
T Consensus 36 ~GRll~ydp~t~~~~vl~~--~L------------~fpNGVals~d~~~vlv~Et~~~Ri~r 83 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLD--GL------------YFPNGVALSPDESFVLVAETGRYRILR 83 (89)
T ss_dssp -EEEEEEETTTTEEEEEEE--EE------------SSEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred CcCEEEEECCCCeEEEehh--CC------------CccCeEEEcCCCCEEEEEeccCceEEE
Confidence 3456789999999744442 33 278999999999999987433333333
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.21 Score=55.89 Aligned_cols=173 Identities=12% Similarity=0.084 Sum_probs=105.6
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--C---CEEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--G---EKLFQV 165 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g---~~LY~l 165 (346)
...++.++..-..+- .||.|.+... |+.|.+ +++.|-+||+..-+.- ...+...+.+-|... | .+++.+
T Consensus 105 ~~~~la~~~~h~G~V-~gLDfN~~q~nlLASGa--~~geI~iWDlnn~~tP--~~~~~~~~~~eI~~lsWNrkvqhILAS 179 (1049)
T KOG0307|consen 105 SEEVLATKSKHTGPV-LGLDFNPFQGNLLASGA--DDGEILIWDLNKPETP--FTPGSQAPPSEIKCLSWNRKVSHILAS 179 (1049)
T ss_pred chHHHhhhcccCCce-eeeeccccCCceeeccC--CCCcEEEeccCCcCCC--CCCCCCCCcccceEeccchhhhHHhhc
Confidence 355666664223343 7999987765 777766 7789999999874321 111222233333332 2 457777
Q ss_pred EeeCCEEEEEECCCCcEEEEEecCCC-c---eeEEeeCC-CEEEEECC---CCeEEEEeCCCCcE-EEEEEeccCCeeee
Q 019103 166 TWLQKTGFIYDQNNLNKLEEFTHQMK-D---GWGLATDG-KVLFGSDG---SSMLYQIDPQTLKV-IRKDIVRYKGREVR 236 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~~i~ti~~~~p-e---GwGLt~Dg-~~LyvSdG---s~~l~vIDp~T~kv-i~~I~V~~~G~pv~ 236 (346)
.--++++.|.|.+.-+.+-.+....+ - +..-.||. ..|+++.+ .-.|..+|.+.-.. .+..+....|.
T Consensus 180 ~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gi--- 256 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGI--- 256 (1049)
T ss_pred cCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccce---
Confidence 77788999999887777777765312 1 22234554 45666543 44566667332111 11122222221
Q ss_pred eceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019103 237 NLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 237 ~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
+ -|+|- |.++.+++..++.|..=+++||+|++.+..
T Consensus 257 -l-slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 257 -L-SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred -e-eeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 1 24444 568889999999999999999999999966
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.08 E-value=2.3 Score=43.40 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=51.5
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecC---------CCceeEEeeCCCE-EEEEC--CCCeEEEEeCCCCcEEEEEEe
Q 019103 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---------MKDGWGLATDGKV-LFGSD--GSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---------~peGwGLt~Dg~~-LyvSd--Gs~~l~vIDp~T~kvi~~I~V 228 (346)
+.+.+.|+ .-.|+.|+..+.++.-. ..- +++.||++ ||.|| |..+++.+|.+|++++ ++
T Consensus 5 ~~~~~~~~----~~~D~~TG~~VtrLT~~~~~~h~~YF~~~--~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~---QL 75 (386)
T PF14583_consen 5 TTIPLEFK----TWIDPDTGHRVTRLTPPDGHSHRLYFYQN--CFTDDGRKLLFASDFDGNRNLYLLDLATGEIT---QL 75 (386)
T ss_dssp -EEE--EE----EEE-TTT--EEEE-S-TTS-EE---TTS----B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE---E-
T ss_pred cEecccee----EEeCCCCCceEEEecCCCCcccceeecCC--CcCCCCCEEEEEeccCCCcceEEEEcccCEEE---EC
Confidence 34444444 67899999999988632 112 34788966 56677 6789999999999875 33
Q ss_pred ccC-Ceeeeecee-eEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019103 229 RYK-GREVRNLNE-LEFIKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 229 ~~~-G~pv~~lNE-LE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
++. |.. ...+ +...+..+|- ++....|..+|.+|++....+.+
T Consensus 76 Tdg~g~~--~~g~~~s~~~~~~~Y-v~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 76 TDGPGDN--TFGGFLSPDDRALYY-VKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --SS-B---TTT-EE-TTSSEEEE-EETTTEEEEEETTT--EEEEEE-
T ss_pred ccCCCCC--ccceEEecCCCeEEE-EECCCeEEEEECCcCcEEEEEEC
Confidence 321 111 0112 2233445532 44567899999999998776655
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.95 E-value=2.4 Score=41.65 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=79.8
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECC--CCcEEEEec--cCCCeeEEEEEE-eCCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALE--TGKVEAINQ--MEGSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~--Tgkv~~~~~--l~~~~FgeGit~-~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
.+.+++|+++..+-| +..+|-.|.++ +.++++... ....-|-. +. .++..|.+..+++.+.|||...+...
T Consensus 163 s~~~snd~~~~~~Vg--ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~--S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVG--DSRRVFRYAIDDESEYIENIYEAPTSDHGFYN--SFSENDLQFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeEEcCCCceEEEec--CCCcceEEEeCCccceeeeeEecccCCCceee--eeccCcceEEEEecCCcEEEEEecccccc
Confidence 567888889999988 55566666554 445555232 22333332 23 24779999999999999998766544
Q ss_pred EEEec-CCCceeE------EeeCC--CEEEEECCCCeEEEEeCCCCcEEEEEEeccC
Q 019103 184 EEFTH-QMKDGWG------LATDG--KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 184 ~ti~~-~~peGwG------Lt~Dg--~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
-.+.. ..|..=| +++-| +.|+.|++-+.++++|..+++-...|.+-++
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 33322 1222212 44433 6899999999999999999998888877653
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.25 Score=53.38 Aligned_cols=169 Identities=14% Similarity=0.123 Sum_probs=101.2
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec--------cCCCeeEEEEEEeCCEEEEEEee-CCEEEEEECC
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ--------MEGSYFGEGLTLLGEKLFQVTWL-QKTGFIYDQN 178 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~--------l~~~~FgeGit~~g~~LY~ltw~-~~~v~V~D~~ 178 (346)
..|.|+.+..|+.... .+..|.+||+..+|+++.+. +.=+|||+ |.+.|- +...-+.|.+
T Consensus 74 eSl~f~~~E~Llaags--asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~---------~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGS--ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE---------FFASGSTDTDLKIWDIR 142 (825)
T ss_pred eeeecCcchhhhcccc--cCCceeeeehhhhhhhhhhhccccCcceeeeccceE---------Eeccccccccceehhhh
Confidence 6778877666665533 34499999999999777552 12234443 223333 2233444544
Q ss_pred CCcEEEEEecCCCc---eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC-EEEEEecC
Q 019103 179 NLNKLEEFTHQMKD---GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG-EVWANVWQ 254 (346)
Q Consensus 179 tl~~i~ti~~~~pe---GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G-~LyaNv~~ 254 (346)
.--...++.-. +. -..|+|||+|+-.-..++.+-++|..-+++.....-... ..+-+|+..- .|.+..-.
T Consensus 143 k~Gc~~~~~s~-~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-----~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 143 KKGCSHTYKSH-TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-----KVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred ccCceeeecCC-cceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-----cccccccCchhhhhccCCC
Confidence 33344444421 22 223689999554433368999999988888766654321 1122555543 45566666
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019103 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
+.+|-.-|.+|-+++...+. . -+-.-+.+|++++..++-
T Consensus 217 d~tv~f~dletfe~I~s~~~-~------------~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKP-E------------TDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred CceeeeeccceeEEeeccCC-c------------cCCceeeeecCCceeeec
Confidence 77788889998888877744 1 123467889998876554
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.93 E-value=11 Score=37.65 Aligned_cols=192 Identities=7% Similarity=-0.004 Sum_probs=116.6
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCC---CcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALET---GKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~T---gkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
+.+..++.| -++.|..+++ +-+|++.= +.-+.++|..+ -.+..+..++..- .+-+++.|++-|++-|.++
T Consensus 120 ~~~~~lnt~--gyaygv~vsG-n~aYVadl---ddgfLivdvsdpssP~lagrya~~~~d-~~~v~ISGn~AYvA~~d~G 192 (370)
T COG5276 120 TLIGFLNTD--GYAYGVYVSG-NYAYVADL---DDGFLIVDVSDPSSPQLAGRYALPGGD-THDVAISGNYAYVAWRDGG 192 (370)
T ss_pred ceeccccCC--ceEEEEEecC-CEEEEeec---cCcEEEEECCCCCCceeeeeeccCCCC-ceeEEEecCeEEEEEeCCC
Confidence 445555554 3446888863 57888853 23455666554 4567777665421 2678999999999866655
Q ss_pred EEEEEE---CCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCE
Q 019103 171 TGFIYD---QNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE 247 (346)
Q Consensus 171 ~v~V~D---~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~ 247 (346)
+.++| +..=+.+++...+ |.-++++.-+++.|+.+.+.-|.++|..+.+-....-..+--.|...- ....-+.+
T Consensus 193 -L~ivDVSnp~sPvli~~~n~g-~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s-~v~Vs~~~ 269 (370)
T COG5276 193 -LTIVDVSNPHSPVLIGSYNTG-PGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSIS-TVPVSGEY 269 (370)
T ss_pred -eEEEEccCCCCCeEEEEEecC-CceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCccccc-ceecccce
Confidence 45556 4566788888886 666778888999999999999999998876643333332211232210 11223557
Q ss_pred EEEEecCCCeEEEEe---CCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC
Q 019103 248 VWANVWQTDCIARIS---HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW 311 (346)
Q Consensus 248 LyaNv~~sn~I~vID---~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W 311 (346)
.|+... ..-+..|| |.+-.+...+++++-. --||+.. ++.+|++-|+.
T Consensus 270 ~Yvadg-a~gl~~idisnp~spfl~ss~~t~g~~-------------a~gi~ay--~~y~yiadkn~ 320 (370)
T COG5276 270 AYVADG-AKGLPIIDISNPPSPFLSSSLDTAGYQ-------------AAGIRAY--GNYNYIADKNT 320 (370)
T ss_pred eeeecc-ccCceeEeccCCCCCchhccccCCCcc-------------ccceEEe--cCeeEeccCCc
Confidence 887653 22233343 3334455555553211 1356554 57888998883
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.82 E-value=3.4 Score=45.26 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=78.2
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
.++...-|.|+..|..+.|.| -+..|.+||+-...-..++.=.+..--+..-..++.+.+++-+++.+-+.|.+|...
T Consensus 106 HK~AVt~l~fd~~G~rlaSGs--kDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC 183 (888)
T KOG0306|consen 106 HKAAVTTLKFDKIGTRLASGS--KDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC 183 (888)
T ss_pred cccceEEEEEcccCceEeecC--CCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee
Confidence 456667889999999999988 456999999876544433321111101111122588999999999999999999999
Q ss_pred EEEEecCCCceeEEeeCCCEEEEECCCC--eEEEE
Q 019103 183 LEEFTHQMKDGWGLATDGKVLFGSDGSS--MLYQI 215 (346)
Q Consensus 183 i~ti~~~~peGwGLt~Dg~~LyvSdGs~--~l~vI 215 (346)
..+.=-...|=|+|+-+++.+.++-+++ .++-+
T Consensus 184 f~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 184 FETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred eeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 8887543479999999998887754444 55555
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=92.72 E-value=9.9 Score=36.64 Aligned_cols=180 Identities=15% Similarity=0.147 Sum_probs=98.7
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEEe---C-----CE-EEEEEee--------C-CEEEEEECCC-------Cc
Q 019103 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLL---G-----EK-LFQVTWL--------Q-KTGFIYDQNN-------LN 181 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~---g-----~~-LY~ltw~--------~-~~v~V~D~~t-------l~ 181 (346)
+|.|+.+|..+.+++..+.+++.--+..+... + .. +.+.|-. . +++++|+..+ ++
T Consensus 1 ~s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 1 ASSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp --EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred CcEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 36899999999999999988776555544442 1 23 3344543 2 7889998877 35
Q ss_pred EEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCc-EEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCC-eEE
Q 019103 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLK-VIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTD-CIA 259 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~k-vi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn-~I~ 259 (346)
.+.+.++. ..-.++++-+++|.++-| ++|++.+....+ +...-.... ++ ....+...+++|++..-... .+.
T Consensus 81 ~i~~~~~~-g~V~ai~~~~~~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~---~~-~i~sl~~~~~~I~vgD~~~sv~~~ 154 (321)
T PF03178_consen 81 LIHSTEVK-GPVTAICSFNGRLVVAVG-NKLYVYDLDNSKTLLKKAFYDS---PF-YITSLSVFKNYILVGDAMKSVSLL 154 (321)
T ss_dssp EEEEEEES-S-EEEEEEETTEEEEEET-TEEEEEEEETTSSEEEEEEE-B---SS-SEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEEeec-CcceEhhhhCCEEEEeec-CEEEEEEccCcccchhhheecc---eE-EEEEEeccccEEEEEEcccCEEEE
Confidence 55555654 345678877778888765 566676655555 443333322 22 33346666777777654322 344
Q ss_pred EEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeecccc
Q 019103 260 RISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRE 325 (346)
Q Consensus 260 vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~ 325 (346)
..|.+..+.. .+.- + .....+. .+++-.+++ .++.+-.-.+++-.+..|....
T Consensus 155 ~~~~~~~~l~-~va~-d---------~~~~~v~-~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~ 207 (321)
T PF03178_consen 155 RYDEENNKLI-LVAR-D---------YQPRWVT-AAEFLVDED-TIIVGDKDGNLFVLRYNPEIPN 207 (321)
T ss_dssp EEETTTE-EE-EEEE-E---------SS-BEEE-EEEEE-SSS-EEEEEETTSEEEEEEE-SS-SS
T ss_pred EEEccCCEEE-EEEe-c---------CCCccEE-EEEEecCCc-EEEEEcCCCeEEEEEECCCCcc
Confidence 4565333221 1210 0 0111233 344443445 5555566688888888654333
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.65 E-value=10 Score=36.77 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=74.0
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
.-.-|..||.-.+++| .+-.|+.|++..|..++.+.= +.+..-..++.+ +.=+.+--.+..+.++|.+|++++.+|
T Consensus 21 ~avryN~dGnY~ltcG--sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCG--SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred EEEEEccCCCEEEEcC--CCceEEeecccccceeeeecCCCceeeecccccc-ccccccCCCCceEEEEEcccCeeeeec
Confidence 4556667788888889 677999999999999988853 322222222223 334455566788999999999999999
Q ss_pred ecCCCceeEEeeCCC-EEEEECC-CCeEEEEeCCCC
Q 019103 187 THQMKDGWGLATDGK-VLFGSDG-SSMLYQIDPQTL 220 (346)
Q Consensus 187 ~~~~peGwGLt~Dg~-~LyvSdG-s~~l~vIDp~T~ 220 (346)
..-..+==++..+.+ .+.+|-+ +.++..+|-...
T Consensus 98 rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~ 133 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR 133 (307)
T ss_pred ccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence 742223234555544 3444544 789999996553
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.64 E-value=1.4 Score=47.30 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=90.8
Q ss_pred CCcceeEEE-ecCCEEEEEcCCCCCCeEEEEECCCC--cEEEEe------ccC--C--CeeEEEEEE-eCCEEEEEEeeC
Q 019103 104 RAFTQGLLY-AENDTLFESTGLYGRSSVRRVALETG--KVEAIN------QME--G--SYFGEGLTL-LGEKLFQVTWLQ 169 (346)
Q Consensus 104 ~~FTqGL~~-~~d~~LyeStGlyg~s~V~~iDl~Tg--kv~~~~------~l~--~--~~FgeGit~-~g~~LY~ltw~~ 169 (346)
+.|.+.|++ .++..|+.|.|+.+ .|.+||..+| +++.+. .++ + ..+. ++. ..+.+++.--.+
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD~--~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS--LA~N~t~t~ivsGgte 192 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLDR--KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS--LAMNQTGTIIVSGGTE 192 (735)
T ss_pred cchheeeeecccCceeEEecCCCc--cEEEEEccCcchhhhhhccccccccCCCCCccceee--eecCCcceEEEecCcc
Confidence 567789999 67788999999755 9999999988 233222 122 1 1111 121 124688887889
Q ss_pred CEEEEEECCCCcEEEEEecCCCcee---EEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCC
Q 019103 170 KTGFIYDQNNLNKLEEFTHQMKDGW---GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~~~~peGw---GLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
+.+-++|+.|.+.+-.+. +..+-. -+..||.++..+-.+.+|-++|..-.+-+.++.|..+|
T Consensus 193 k~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 193 KDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred cceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 999999999999988886 322322 35778888888777889999999999999999998765
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.61 E-value=12 Score=37.29 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=79.0
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCC-CcEEEEe--ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEE
Q 019103 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALET-GKVEAIN--QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~T-gkv~~~~--~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D 176 (346)
|-.|..=..-|+|+|....+.++|-+ +++||.|+... |....+. .+++..+-.--.-+|.++|...- ++.+-++|
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SW-D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~-Dk~~k~wD 100 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSW-DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC-DKQAKLWD 100 (347)
T ss_pred CCCcccchheeEeccccCceEEeccc-CCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc-CCceEEEE
Confidence 33344445789999844433444433 46999999876 5554433 45555555444446778887653 57888999
Q ss_pred CCCCcEEEEEecCCCceeE----EeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEecc
Q 019103 177 QNNLNKLEEFTHQMKDGWG----LATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 177 ~~tl~~i~ti~~~~peGwG----Lt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~ 230 (346)
..+.++..--.+. .+.. +..-...+.|+-. +.+|-++|++.-+.+.++...+
T Consensus 101 L~S~Q~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe 157 (347)
T KOG0647|consen 101 LASGQVSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE 157 (347)
T ss_pred ccCCCeeeeeecc--cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc
Confidence 9998543322332 1112 1112234555544 7899999999999999988865
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.72 Score=46.43 Aligned_cols=148 Identities=20% Similarity=0.183 Sum_probs=92.3
Q ss_pred EEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC-----cEEEEEecCC--Cc
Q 019103 120 ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL-----NKLEEFTHQM--KD 192 (346)
Q Consensus 120 eStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl-----~~i~ti~~~~--pe 192 (346)
.+.| .+.+|-.+|.+||- -.........|+.-++..++ |...--+++.|++||...+ .....+-++. .-
T Consensus 228 fs~G--~sqqv~L~nvetg~-~qsf~sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVG--LSQQVLLTNVETGH-QQSFQSKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTS 303 (425)
T ss_pred eccc--ccceeEEEEeeccc-ccccccchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhh
Confidence 4667 67799999999983 23333444556544443334 4555678899999998776 2222333321 00
Q ss_pred eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-------CCEEEEEecCCCeEEEE-eCC
Q 019103 193 GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-------KGEVWANVWQTDCIARI-SHE 264 (346)
Q Consensus 193 GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-------~G~LyaNv~~sn~I~vI-D~~ 264 (346)
=--|-.+++.|.+||=+++|...|..--|-.+.|.-.+ | +.|+.++. +|.|++ ..+|+..+| ..+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-G----HvN~~a~l~~~v~~eeg~I~s--~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-G----HVNLSAYLPAHVKEEEGSIFS--VGDDCYTRIWSLD 376 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeee-c----ccccccccccccccccceEEE--ccCeeEEEEEecc
Confidence 00123468899999989999999976544433343332 2 44555543 456666 468887777 678
Q ss_pred CCeEEEEEECCchh
Q 019103 265 DGVVLGWVLLPNLR 278 (346)
Q Consensus 265 TG~Vv~~I~l~~l~ 278 (346)
+|..+.+|+++.-+
T Consensus 377 ~ghLl~tipf~~s~ 390 (425)
T KOG2695|consen 377 SGHLLCTIPFPYSA 390 (425)
T ss_pred cCceeeccCCCCcc
Confidence 89999999885543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.36 E-value=1.6 Score=43.59 Aligned_cols=186 Identities=13% Similarity=0.136 Sum_probs=114.6
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe----CCEEEEEEeeCCEEEEEECCCCcE
Q 019103 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL----GEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~----g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
..|.|.|.| .|.++| +...++.||..|-+--..-. |....-++++-. .+.||+..-+++.+-++|--+.+-
T Consensus 220 rsiSfHPsGefllvgT---dHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGT---DHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred eeEeecCCCceEEEec---CCCceeEEeccceeEeeecC-cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH
Confidence 578888888 466665 46799999999876433332 333334566664 478999999999999999999999
Q ss_pred EEEEecCCCceeE-----EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe-ccCCeeeeeceeeEeeCCEEEEEecCCC
Q 019103 183 LEEFTHQMKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV-RYKGREVRNLNELEFIKGEVWANVWQTD 256 (346)
Q Consensus 183 i~ti~~~~peGwG-----Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V-~~~G~pv~~lNELE~~~G~LyaNv~~sn 256 (346)
+.+|... -.|-. ++.||+.+..|--++.+..+...|++.+.+-.= |.-|+...+.+. +| |-..+
T Consensus 296 v~t~~~A-H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqA-------vF--NhtEd 365 (430)
T KOG0640|consen 296 VRTIGNA-HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQA-------VF--NHTED 365 (430)
T ss_pred HHHHHhh-cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhh-------hh--cCccc
Confidence 9999753 23334 455788666554488888888888887644322 222333222211 11 22356
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
.|..+|-+++.+..|=.-...+..+..-+ -+..+--|..+|.+. .|+|+..
T Consensus 366 yVl~pDEas~slcsWdaRtadr~~l~slg--Hn~a~R~i~HSP~~p-~FmTcsd 416 (430)
T KOG0640|consen 366 YVLFPDEASNSLCSWDARTADRVALLSLG--HNGAVRWIVHSPVEP-AFMTCSD 416 (430)
T ss_pred eEEccccccCceeeccccchhhhhhcccC--CCCCceEEEeCCCCC-ceeeecc
Confidence 67788888888766653222221111111 122344577777644 5667654
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=92.34 E-value=6.1 Score=40.29 Aligned_cols=144 Identities=23% Similarity=0.276 Sum_probs=74.1
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecCC------CceeEEeeCCCE---EEEECCC---Ce--EEEEeCCCCcEEEEE
Q 019103 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQM------KDGWGLATDGKV---LFGSDGS---SM--LYQIDPQTLKVIRKD 226 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~------peGwGLt~Dg~~---LyvSdGs---~~--l~vIDp~T~kvi~~I 226 (346)
-+.+.|-+++=++|||. +++++..++.+. .+|+.| +|+. +.+||.+ ++ ++.||+.+..+.
T Consensus 69 SlIigTdK~~GL~VYdL-~Gk~lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~--- 142 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDL-DGKELQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT--- 142 (381)
T ss_dssp -EEEEEETTTEEEEEET-TS-EEEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE---
T ss_pred ceEEEEeCCCCEEEEcC-CCcEEEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcce---
Confidence 36666777777888885 466667666542 243333 4554 4668864 44 788899887643
Q ss_pred EeccCCeeee-ecee---eE-ee---CCEEEEEecC-CCe--EE-EEeCCCCeEEEEEECCchhhhhhhccCCCCceeeE
Q 019103 227 IVRYKGREVR-NLNE---LE-FI---KGEVWANVWQ-TDC--IA-RISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNG 294 (346)
Q Consensus 227 ~V~~~G~pv~-~lNE---LE-~~---~G~LyaNv~~-sn~--I~-vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNG 294 (346)
.+++.+.|+. .++| +. |. +|.+||-+-. +.. -. ..+..+|++.+++ ++.. ....-+.|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~l----VR~f------~~~sQ~EG 212 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATL----VREF------KVGSQPEG 212 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEE----EEEE------E-SS-EEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEE----EEEe------cCCCcceE
Confidence 2333223321 2222 22 21 4655543322 222 22 3355666654443 1111 11236899
Q ss_pred EEEeCCCCEEEEecCCCCcEEEEEEee
Q 019103 295 IAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 295 IA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
++.|.+..+|||.-++ --|++....|
T Consensus 213 CVVDDe~g~LYvgEE~-~GIW~y~Aep 238 (381)
T PF02333_consen 213 CVVDDETGRLYVGEED-VGIWRYDAEP 238 (381)
T ss_dssp EEEETTTTEEEEEETT-TEEEEEESSC
T ss_pred EEEecccCCEEEecCc-cEEEEEecCC
Confidence 9999999999997665 5677776654
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=92.33 E-value=6.8 Score=37.76 Aligned_cols=118 Identities=10% Similarity=0.161 Sum_probs=80.8
Q ss_pred eeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc-EEEEeccCCCeeEEEEEEeCCEEEEEEeeC
Q 019103 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQMEGSYFGEGLTLLGEKLFQVTWLQ 169 (346)
Q Consensus 91 ~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l~~~~FgeGit~~g~~LY~ltw~~ 169 (346)
..++.+.+.+++... ..|..- +|+|.++.| +.|.++++...+ +...-.++...+...+...++.+++.+-..
T Consensus 77 ~~l~~i~~~~~~g~V--~ai~~~-~~~lv~~~g----~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPV--TAICSF-NGRLVVAVG----NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMK 149 (321)
T ss_dssp -EEEEEEEEEESS-E--EEEEEE-TTEEEEEET----TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSS
T ss_pred eEEEEEEEEeecCcc--eEhhhh-CCEEEEeec----CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEccc
Confidence 467888888884443 567666 578888887 599999999988 888877877778899999999999999776
Q ss_pred CE-EEEEECC--CCcEEEEEecCCCceeE--EeeCCCEEEEECCCCeEEEEe
Q 019103 170 KT-GFIYDQN--NLNKLEEFTHQMKDGWG--LATDGKVLFGSDGSSMLYQID 216 (346)
Q Consensus 170 ~~-v~V~D~~--tl~~i~ti~~~~peGwG--Lt~Dg~~LyvSdGs~~l~vID 216 (346)
+. ++.||.+ ++.++++=..+ ..... +-.|++.++++|....|+++.
T Consensus 150 sv~~~~~~~~~~~l~~va~d~~~-~~v~~~~~l~d~~~~i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 150 SVSLLRYDEENNKLILVARDYQP-RWVTAAEFLVDEDTIIVGDKDGNLFVLR 200 (321)
T ss_dssp SEEEEEEETTTE-EEEEEEESS--BEEEEEEEE-SSSEEEEEETTSEEEEEE
T ss_pred CEEEEEEEccCCEEEEEEecCCC-ccEEEEEEecCCcEEEEEcCCCeEEEEE
Confidence 65 4457863 35555542221 11222 223667888899888777665
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.33 E-value=13 Score=37.25 Aligned_cols=207 Identities=9% Similarity=0.060 Sum_probs=122.5
Q ss_pred EEEEEecCCCCcceeEEEecCCEEE-EEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEE
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLF-ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTG 172 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~Ly-eStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v 172 (346)
...++.+.. +..+.|++.|.++ +++. +.+|.+||+.|..+-+.+.-.-+|. .-+... .++..+..-.++.+
T Consensus 17 l~~tld~~~---a~~~~Fs~~G~~lAvGc~---nG~vvI~D~~T~~iar~lsaH~~pi-~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 17 LTHTLDNPL---AECCQFSRWGDYLAVGCA---NGRVVIYDFDTFRIARMLSAHVRPI-TSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred hceeccCCc---cceEEeccCcceeeeecc---CCcEEEEEccccchhhhhhccccce-eEEEecCCCCEeeeecCCcee
Confidence 344555532 4789999888543 4432 3599999999987543332211221 123332 35566666778999
Q ss_pred EEEECCCCcEEEEEecCCC-ceeEEeeCCCEEE-EE--CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE----ee
Q 019103 173 FIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLF-GS--DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE----FI 244 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~p-eGwGLt~Dg~~Ly-vS--dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE----~~ 244 (346)
..+|...+..+++|...+| -|.-+.|-.+... ++ +.+..+..+++.+.++ ++..++| .+|+-. ++
T Consensus 90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~---Lp~d~d~----dln~sas~~~fd 162 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV---LPKDDDG----DLNSSASHGVFD 162 (405)
T ss_pred EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee---ccCCCcc----cccccccccccc
Confidence 9999999999999987643 3333455444333 33 3465665555533333 3444432 233322 22
Q ss_pred --CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec
Q 019103 245 --KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322 (346)
Q Consensus 245 --~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~ 322 (346)
+.+||+-+- ...+.++|.+|.+++++....... ..--|-+. ..+++|+++-..--|...++..+
T Consensus 163 r~g~yIitGts-KGkllv~~a~t~e~vas~rits~~------------~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 163 RRGKYIITGTS-KGKLLVYDAETLECVASFRITSVQ------------AIKQIIVS-RKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred CCCCEEEEecC-cceEEEEecchheeeeeeeechhe------------eeeEEEEe-ccCcEEEEecCCceEEEEehhhh
Confidence 347998764 788999999999999988652211 12235564 44567777777776666666555
Q ss_pred cccccCC
Q 019103 323 KRERKDG 329 (346)
Q Consensus 323 ~~~~~~~ 329 (346)
...-.+|
T Consensus 229 ~~~~r~~ 235 (405)
T KOG1273|consen 229 DDEGRDG 235 (405)
T ss_pred cccCccC
Confidence 4443333
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.09 E-value=6.3 Score=38.72 Aligned_cols=130 Identities=10% Similarity=-0.025 Sum_probs=85.0
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeec
Q 019103 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL 238 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~l 238 (346)
+++.+.---++++..+|+++++.+-+--.+ .-|+-++- -|+.+.+---+..|||+|.+|+...-....-+. +.--
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~---vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET---VKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh---hccc
Confidence 344444455789999999999998876654 23555533 355555544588999999999866544444221 1100
Q ss_pred eeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 239 NELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 239 NELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
-.+++..|-||.... +....++|+++...+-.... . +.+..+-+++|....||+|
T Consensus 99 a~~d~~~glIycgsh-d~~~yalD~~~~~cVykskc---g----------G~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSH-DGNFYALDPKTYGCVYKSKC---G----------GGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred eEEcCCCceEEEecC-CCcEEEecccccceEEeccc---C----------CceeccceecCCCceEEEE
Confidence 126677889999874 67789999999998877533 2 2244455666655556654
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.5 Score=48.62 Aligned_cols=158 Identities=11% Similarity=0.111 Sum_probs=99.0
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEE--EECCCCcE
Q 019103 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFI--YDQNNLNK 182 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V--~D~~tl~~ 182 (346)
+||+++--+ .+|.+....++=.|-.+|-.-.|++-...|- +|-+.-+.+.++.||-.+|... +|-- .|-+..++
T Consensus 1071 EGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLV-NPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRi 1149 (1289)
T KOG1214|consen 1071 EGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLV-NPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRI 1149 (1289)
T ss_pred cceeeeeccceeeeeccccchhheeecCCceeeEEEeeccc-CcceEEeecccCceeeccccccCCcceeeccCCccceE
Confidence 899998545 4887766445434444444445555555542 2335556667899999999743 2222 45556666
Q ss_pred EEEEecCCCceeEEeeCCCEE-EEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEE
Q 019103 183 LEEFTHQMKDGWGLATDGKVL-FGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI 261 (346)
Q Consensus 183 i~ti~~~~peGwGLt~Dg~~L-yvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vI 261 (346)
+-.-+++.|.|..+.+..+.| ||--|++++.-+.|.- .-.++|.-+- --|+. +.-....+|-+.|..|.|+-+
T Consensus 1150 lin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g-~gRR~i~~~L-qYPF~----itsy~~~fY~TDWk~n~vvsv 1223 (1289)
T KOG1214|consen 1150 LINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDG-TGRRVIQNNL-QYPFS----ITSYADHFYHTDWKRNGVVSV 1223 (1289)
T ss_pred EeecccCCCCCceeCcccceeeEEecCCcceeEecCCC-Ccchhhhhcc-cCcee----eeeccccceeeccccCceEEe
Confidence 666667788988888888777 5533788888888742 2222222111 12443 322234599999999999999
Q ss_pred eCCCCeEEEEE
Q 019103 262 SHEDGVVLGWV 272 (346)
Q Consensus 262 D~~TG~Vv~~I 272 (346)
|...++-....
T Consensus 1224 ~~~~~~~td~~ 1234 (1289)
T KOG1214|consen 1224 NKHSGQFTDEY 1234 (1289)
T ss_pred ecccccccccc
Confidence 99988755433
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.05 E-value=1.4 Score=44.99 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=69.3
Q ss_pred EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe-cC-C-Ccee
Q 019103 118 LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT-HQ-M-KDGW 194 (346)
Q Consensus 118 LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~-~~-~-peGw 194 (346)
++.|+| +++.|..||..||+.+-.+..+.-..-.-.. .++.+++.+-++.+|-|+|+.+.+++.+-. ++ . +.-.
T Consensus 146 VLlsag--~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn-~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 146 VLLSAG--SDNTVSIWNVGTGEALITLDHPDMVYSMSFN-RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred hHhhcc--CCceEEEEeccCCceeeecCCCCeEEEEEec-cCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 556778 7899999999999987777766544443222 245688999999999999999999998772 32 1 1111
Q ss_pred EEeeCCCEEEEECC-----CCeEEEEeCCCCcE
Q 019103 195 GLATDGKVLFGSDG-----SSMLYQIDPQTLKV 222 (346)
Q Consensus 195 GLt~Dg~~LyvSdG-----s~~l~vIDp~T~kv 222 (346)
-+-.+|+ ++. -| ..++..+||.+++.
T Consensus 223 ifl~~g~-i~t-TGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 223 IFLASGK-IFT-TGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred EEeccCc-eee-eccccccccceeccCcccccC
Confidence 1334566 333 32 44788899888765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.93 E-value=2.8 Score=45.14 Aligned_cols=147 Identities=15% Similarity=0.140 Sum_probs=95.0
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCc
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
++--...|+..++|+++++.|. +.-|++||..|++-+-++. -..+.-..=+..+|.++ +.+--++++-+.|....+
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgt--ek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~-ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGT--EKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRL-LSASSDGTIRLWDLGQQR 246 (735)
T ss_pred CccceeeeecCCcceEEEecCc--ccceEEeccccccceeeeeccccceEEEEEcCCCCeE-eecCCCceEEeeeccccc
Confidence 3333357788788899999985 4599999999997544443 11222222122234444 455568999999999999
Q ss_pred EEEEEecCCCceeEEe--eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCC
Q 019103 182 KLEEFTHQMKDGWGLA--TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQT 255 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt--~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~s 255 (346)
-+.++.+...--|+|. ++=+++|..+.+..|+.=|..+++. ...+...-.|+..+ .+.-.+.-+|++-|.+
T Consensus 247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~tlick~daPv~~l-~~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--STLICKEDAPVLKL-HLHEHDNSVWVTTTDS 319 (735)
T ss_pred eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--heEeecCCCchhhh-hhccccCCceeeeccc
Confidence 9999987533457765 4457889888899999999998733 23333333465532 1111244568888744
|
|
| >COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.88 E-value=17 Score=37.91 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=28.0
Q ss_pred eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEE
Q 019103 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG 205 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~Lyv 205 (346)
+|.+||++ .+++++++|+.- ....++.-+.+|..-|.--++.|.+
T Consensus 110 dG~~iy~s--~~~KvYvi~~~p-p~~~~i~~~i~ecg~l~l~~nvL~i 154 (603)
T COG4880 110 DGERIYVS--VNGKVYVIDKNP-PLLETIDCPIPECGILALGGNVLAI 154 (603)
T ss_pred CCcEEEEE--eCCeEEEEcCCC-chhhhcccCCccceEEEEcCcEEEE
Confidence 57889998 589999999653 3444554444454444444554444
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=91.86 E-value=2.5 Score=43.34 Aligned_cols=144 Identities=12% Similarity=0.120 Sum_probs=87.8
Q ss_pred eeCCEEEEEECCCCcEEE----------EEecCCCceeEEeeCC---CEEEEECCCCeEEEEeCCCCcE----EEEEEe-
Q 019103 167 WLQKTGFIYDQNNLNKLE----------EFTHQMKDGWGLATDG---KVLFGSDGSSMLYQIDPQTLKV----IRKDIV- 228 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~----------ti~~~~peGwGLt~Dg---~~LyvSdGs~~l~vIDp~T~kv----i~~I~V- 228 (346)
-..+.++|||..+..-.. ++..-..||+||+.+- .+|..+..+.+|..+|...... +....+
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~ 223 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF 223 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEe
Confidence 446677777765432221 2222125899998753 3555555577888888655333 221122
Q ss_pred ccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCC--eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019103 229 RYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDG--VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG--~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
..+...+ ....+-+.+..+|+.+-.+..+.+-|+.++ +.-...+. + ..-.|.++|+|-...++-
T Consensus 224 ~~h~~~V-eDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a---------h----~~~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 224 SGHEDVV-EDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA---------H----SAEVNCVAFNPFNEFILA 289 (422)
T ss_pred ecCCcce-ehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc---------c----CCceeEEEeCCCCCceEE
Confidence 1121111 111222336689999999999999999964 22222211 1 234799999999999999
Q ss_pred ecCCCCcEEEEEEeeccc
Q 019103 307 TGKLWPKLYEINLREMKR 324 (346)
Q Consensus 307 TGK~Wp~l~ev~l~~~~~ 324 (346)
||--..+|..-.|+.+++
T Consensus 290 T~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 290 TGSADKTVALWDLRNLNK 307 (422)
T ss_pred eccCCCcEEEeechhccc
Confidence 999888888888765554
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.67 E-value=2.1 Score=43.37 Aligned_cols=200 Identities=12% Similarity=0.162 Sum_probs=114.5
Q ss_pred CCCCceeeeEE---EEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CC
Q 019103 85 DQSPSIYTIQV---VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GE 160 (346)
Q Consensus 85 ~~~~~~~t~~V---v~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~ 160 (346)
+..+.++.++- ..++.. ..-|.+||.++. .-+++.| .+.+|..|-.+- ..++.+..+..+. ||... .+
T Consensus 88 DG~VkiWnlsqR~~~~~f~A-H~G~V~Gi~v~~--~~~~tvg--dDKtvK~wk~~~-~p~~tilg~s~~~--gIdh~~~~ 159 (433)
T KOG0268|consen 88 DGEVKIWNLSQRECIRTFKA-HEGLVRGICVTQ--TSFFTVG--DDKTVKQWKIDG-PPLHTILGKSVYL--GIDHHRKN 159 (433)
T ss_pred CceEEEEehhhhhhhheeec-ccCceeeEEecc--cceEEec--CCcceeeeeccC-Ccceeeecccccc--cccccccc
Confidence 55666666665 445532 245779999986 3344445 445777775443 2333333333321 23322 12
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecCCC--ceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeee
Q 019103 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~p--eGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~ 237 (346)
-+|+. ....+-++|..-...+.++..+.+ --.-+.|--..+.++-+ +..|.++|..+.+.++++..+. .
T Consensus 160 ~~FaT--cGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m------R 231 (433)
T KOG0268|consen 160 SVFAT--CGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM------R 231 (433)
T ss_pred ccccc--cCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec------c
Confidence 23332 245677888877777777775522 11123344456666664 7799999999999999999976 3
Q ss_pred ceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019103 238 LNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 238 lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
.|.+.|- ++..|+.--.+-+++-.|.....- -+ . .... -...|+. ++|+|.|++ ||+|-..-+
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~--p~---~---v~~d---hvsAV~d-VdfsptG~E-fvsgsyDks 295 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSR--PL---N---VHKD---HVSAVMD-VDFSPTGQE-FVSGSYDKS 295 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhcc--cc---h---hhcc---cceeEEE-eccCCCcch-hccccccce
Confidence 3445444 456776554566777777766542 01 0 0011 1234554 889998775 567766554
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=91.63 E-value=17 Score=37.06 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=84.0
Q ss_pred CCeEEEE--ECCCCcEEEEeccCCCee------EEEEEEe----CCEEEEE-EeeCCEEEEE---ECCCC----cEEEEE
Q 019103 127 RSSVRRV--ALETGKVEAINQMEGSYF------GEGLTLL----GEKLFQV-TWLQKTGFIY---DQNNL----NKLEEF 186 (346)
Q Consensus 127 ~s~V~~i--Dl~Tgkv~~~~~l~~~~F------geGit~~----g~~LY~l-tw~~~~v~V~---D~~tl----~~i~ti 186 (346)
.++|++| |.++|.+....... .++ ..|+++. .+.+|+. +-+++.+..| +..++ +++++|
T Consensus 126 ~n~l~~f~id~~~g~L~~v~~~~-~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f 204 (381)
T PF02333_consen 126 RNSLRLFRIDPDTGELTDVTDPA-APIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF 204 (381)
T ss_dssp T-EEEEEEEETTTTEEEE-CBTT-C-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE
T ss_pred CCeEEEEEecCCCCcceEcCCCC-cccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe
Confidence 4565554 77788654432111 111 3567774 3567765 6677766554 33344 567888
Q ss_pred ecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCC--CcEEEEEEeccCCeeeeecee-eEee-----CCEEEEEecCCCe
Q 019103 187 THQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQT--LKVIRKDIVRYKGREVRNLNE-LEFI-----KGEVWANVWQTDC 257 (346)
Q Consensus 187 ~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T--~kvi~~I~V~~~G~pv~~lNE-LE~~-----~G~LyaNv~~sn~ 257 (346)
..+ -+||..+.....+||+++..--|+.++.+. ...-..+... .|..+..--| |... .|+|.|.....|+
T Consensus 205 ~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~-~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~s 283 (381)
T PF02333_consen 205 KVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASA-DGDGLVADVEGLALYYGSDGKGYLIVSSQGDNS 283 (381)
T ss_dssp E-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEB-SSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred cCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecc-cccccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence 874 479999999999999999989999998653 2222223221 1211111111 2221 3589999999999
Q ss_pred EEEEeCCC-CeEEEEEEC
Q 019103 258 IARISHED-GVVLGWVLL 274 (346)
Q Consensus 258 I~vID~~T-G~Vv~~I~l 274 (346)
..|-|-+. .+-++.+.+
T Consensus 284 f~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 284 FAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp EEEEESSTT--EEEEEEE
T ss_pred EEEEecCCCCcccceEEe
Confidence 99999775 677777755
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.62 E-value=7.9 Score=38.08 Aligned_cols=162 Identities=18% Similarity=0.163 Sum_probs=86.0
Q ss_pred CeEEEEECCCCcEEEE-ec---c-CCCeeEEEEEE-eCCE-EEEE-Eee-C--CEEEEEECCCCcEEEEEecCCCcee--
Q 019103 128 SSVRRVALETGKVEAI-NQ---M-EGSYFGEGLTL-LGEK-LFQV-TWL-Q--KTGFIYDQNNLNKLEEFTHQMKDGW-- 194 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~-~~---l-~~~~FgeGit~-~g~~-LY~l-tw~-~--~~v~V~D~~tl~~i~ti~~~~peGw-- 194 (346)
-+|.++|++++++... .+ . ...++. .+.. .+++ +++. .-+ . -.+..+|+.+.+..-.+.. ..+||
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~-~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e-~~~~Wv~ 235 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLT-RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEE-TSDGWVD 235 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEE-EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEE-ESSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcc-cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEe-cCCccee
Confidence 3667789998886421 12 1 223333 2333 2333 5443 222 2 2467788877654333321 12344
Q ss_pred -----EEe-eCC-CEEEEEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE-Eec---CCCeEEEE
Q 019103 195 -----GLA-TDG-KVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA-NVW---QTDCIARI 261 (346)
Q Consensus 195 -----GLt-~Dg-~~LyvSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya-Nv~---~sn~I~vI 261 (346)
.+. +++ ..|++++ |-..|+.+|..+.+.. .+..+.-.+..+..+...++.||- +.. ....|.++
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~---~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR---QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE---ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEccccccee---ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 333 454 4677776 5679999999887733 333322344333334444678884 332 24479999
Q ss_pred eCC-CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 262 SHE-DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 262 D~~-TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
+.+ .|++ ..+.. .. ... +.++++|+++.+..+.
T Consensus 313 ~~~~~~~~-~~LT~---~~---------~~~-~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 313 SLDSGGEP-KCLTC---ED---------GDH-YSASFSPDGKYYVDTY 346 (353)
T ss_dssp ETTETTEE-EESST---TS---------STT-EEEEE-TTSSEEEEEE
T ss_pred EeCCCCCe-EeccC---CC---------CCc-eEEEECCCCCEEEEEE
Confidence 999 6654 33311 10 011 5799999999887763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.54 E-value=2.7 Score=45.21 Aligned_cols=110 Identities=19% Similarity=0.197 Sum_probs=80.1
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe---CCEEEEEEeeCCEEEEEECCCCc
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL---GEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~---g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
-|.|-|+-+|+|++.+-+|. | .-.+| -.+.+....||+|.... ..--|++-..++.+-++ +.++
T Consensus 352 iyPq~L~hsPNGrfV~Vcgd-G--EyiIy--------Tala~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfk 418 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGD-G--EYIIY--------TALALRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFK 418 (794)
T ss_pred cchHHhccCCCCcEEEEecC-c--cEEEE--------EeeehhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecce
Confidence 34588999999998877772 3 22222 23456677889888773 22567776667777777 8899
Q ss_pred EEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc
Q 019103 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
..++|... +....--|..|..-.+++.+.+.|=++.+.+++|.|..
T Consensus 419 e~ksi~~~---~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~~ 464 (794)
T KOG0276|consen 419 EHKSIRPD---MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVTS 464 (794)
T ss_pred eccccccc---cceeeecCCceEEEEeCCeEEEEEcccceEEEEEeecc
Confidence 99999853 22333447888888889999999999999999999965
|
|
| >smart00135 LY Low-density lipoprotein-receptor YWTD domain | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.38 Score=31.85 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=27.5
Q ss_pred CceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 289 IDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 289 ~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
...|||||+|+.++++|-|...=..|+...+.
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~ 39 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLD 39 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence 45789999999999999998887888887764
|
Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. |
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.24 E-value=7.8 Score=40.99 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=29.0
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+..-|+.+|++..-.-. |.+.-.-|++|+||++.|||.
T Consensus 482 ~~~~~~~~g~~~rf~~~------------P~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVG------------PNGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred eeeccccccceeeeccC------------CCCcccccceECCCCCEEEEE
Confidence 66778888887554411 345567999999999999995
|
|
| >KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.23 E-value=5.1 Score=44.58 Aligned_cols=120 Identities=13% Similarity=0.129 Sum_probs=70.5
Q ss_pred eccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEEec--CCCceeEEeeCCCEEEEECC-CC--eEEEEe
Q 019103 144 NQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTH--QMKDGWGLATDGKVLFGSDG-SS--MLYQID 216 (346)
Q Consensus 144 ~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~--~~peGwGLt~Dg~~LyvSdG-s~--~l~vID 216 (346)
+.++... ..||+.+ .+.+|-.+...+.|-.-..+-.+...-|.- .+|||.++.+-++.+|-+|. -+ .+..+|
T Consensus 1020 l~~p~~I-iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~Ld 1098 (1289)
T KOG1214|consen 1020 LSLPGSI-IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLD 1098 (1289)
T ss_pred Eecccce-eeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecC
Confidence 4455432 5667775 567887777777666555443333333333 37999999999999999985 33 344555
Q ss_pred CCCCcEEEEEEecc--CCeeeeeceeeEeeCCEEEEEecCCCe--E--EEEeCCCCeEEEE
Q 019103 217 PQTLKVIRKDIVRY--KGREVRNLNELEFIKGEVWANVWQTDC--I--ARISHEDGVVLGW 271 (346)
Q Consensus 217 p~T~kvi~~I~V~~--~G~pv~~lNELE~~~G~LyaNv~~sn~--I--~vID~~TG~Vv~~ 271 (346)
-.-.|+ +--.+ +.+.+- ++.+.|.||-+.|..+. | +-+|-++.+|+--
T Consensus 1099 G~~rkv---Lf~tdLVNPR~iv----~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin 1152 (1289)
T KOG1214|consen 1099 GSERKV---LFYTDLVNPRAIV----VDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN 1152 (1289)
T ss_pred CceeeE---EEeecccCcceEE----eecccCceeeccccccCCcceeeccCCccceEEee
Confidence 332222 22222 223322 66778999999998652 3 3345555555433
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.68 Score=31.25 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=22.9
Q ss_pred EEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCC
Q 019103 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQT 219 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T 219 (346)
++-+++.+.+.--.++.+++++|+.+.+..|+.+|++|
T Consensus 3 ~~W~~~~~~~~~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 3 VLWSYDTGGPIWSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EEEEEE-SS---S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred eeEEEECCCCcCcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 44445543211123566789999999999999999986
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=91.19 E-value=26 Score=38.21 Aligned_cols=108 Identities=12% Similarity=0.005 Sum_probs=63.0
Q ss_pred eeEEEecCCE-EEEE--cCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe-----eCCEEEEEECCC
Q 019103 108 QGLLYAENDT-LFES--TGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW-----LQKTGFIYDQNN 179 (346)
Q Consensus 108 qGL~~~~d~~-LyeS--tGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw-----~~~~v~V~D~~t 179 (346)
.++.++|||+ |..+ ++..+...|.++|+++|+++... ++...+....+.+++.+|.... ....++..+..|
T Consensus 130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 4677888885 3333 33234567999999999754332 2222234445556777766532 346899999988
Q ss_pred Cc--EEEEEecCCCcee----EEeeCCCEEEE-EC-C-CCeEEEEeC
Q 019103 180 LN--KLEEFTHQMKDGW----GLATDGKVLFG-SD-G-SSMLYQIDP 217 (346)
Q Consensus 180 l~--~i~ti~~~~peGw----GLt~Dg~~Lyv-Sd-G-s~~l~vIDp 217 (346)
.. -.--+... .+.+ ..+.|++++++ +. + ++.++++|.
T Consensus 209 ~~~~d~lv~~e~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 209 PASQDELVYEEK-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ChhHCeEEEeeC-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 82 21122211 1112 23458888776 22 3 668888884
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.33 Score=50.27 Aligned_cols=179 Identities=18% Similarity=0.107 Sum_probs=103.6
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEec
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH 188 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~ 188 (346)
-+-++.||+-+.-.|+.| -|..+|..|+++...+.+-... .-++..-+.=|.+.-+.+-+|||| +.+..+.-+.-
T Consensus 134 ~~~ytrnGrhlllgGrKG--HlAa~Dw~t~~L~~Ei~v~Etv--~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk~ 208 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKG--HLAAFDWVTKKLHFEINVMETV--RDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLKR 208 (545)
T ss_pred eeeecCCccEEEecCCcc--ceeeeecccceeeeeeehhhhh--hhhhhhcchHHHHhhhhceEEEec-CCCcEEeehhh
Confidence 567777886555557666 8999999999999998775442 334554455566667788899999 45555555442
Q ss_pred CCCceeEEee-CCCEEEEE-CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCC
Q 019103 189 QMKDGWGLAT-DGKVLFGS-DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDG 266 (346)
Q Consensus 189 ~~peGwGLt~-Dg~~LyvS-dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG 266 (346)
-. +--.|.. .-..|.++ +.++.+.-.|..++++++.+..+.+-..+..-| +.|.-+-.-. ...+|+.=.|.+-
T Consensus 209 ~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN---P~NaVih~Gh-snGtVSlWSP~sk 283 (545)
T KOG1272|consen 209 HI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN---PYNAVIHLGH-SNGTVSLWSPNSK 283 (545)
T ss_pred cC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC---CccceEEEcC-CCceEEecCCCCc
Confidence 10 0001211 12455554 568899999999999999888865311111001 0111111110 1223333344444
Q ss_pred eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 267 VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 267 ~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+-+..| +-- ....++||++++|..+--||..
T Consensus 284 ePLvKi--------LcH-----~g~V~siAv~~~G~YMaTtG~D 314 (545)
T KOG1272|consen 284 EPLVKI--------LCH-----RGPVSSIAVDRGGRYMATTGLD 314 (545)
T ss_pred chHHHH--------Hhc-----CCCcceEEECCCCcEEeecccc
Confidence 322222 111 1245889999999988888754
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.94 E-value=4.2 Score=42.28 Aligned_cols=151 Identities=12% Similarity=0.032 Sum_probs=96.6
Q ss_pred CCEEEEEcCCC---CCC--eEEEEECCCCcEEEEe---ccCCCeeEEEEEEeCCEEEEEEeeC------CEEEEEECCCC
Q 019103 115 NDTLFESTGLY---GRS--SVRRVALETGKVEAIN---QMEGSYFGEGLTLLGEKLFQVTWLQ------KTGFIYDQNNL 180 (346)
Q Consensus 115 d~~LyeStGly---g~s--~V~~iDl~Tgkv~~~~---~l~~~~FgeGit~~g~~LY~ltw~~------~~v~V~D~~tl 180 (346)
++.+|+=.|.- ... .|.++|+.+..-.... ..|....|.-++..++.||+.--.. +.+..||+.|.
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~ 149 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTR 149 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCC
Confidence 45666644321 122 4889999885433332 3343445677777889999875555 48999999877
Q ss_pred cEEEEEecC----CCceeEEeeCCCEEEEECC-------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEE
Q 019103 181 NKLEEFTHQ----MKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW 249 (346)
Q Consensus 181 ~~i~ti~~~----~peGwGLt~Dg~~LyvSdG-------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Ly 249 (346)
+..---+.+ ...|-.++..|++|||-=| .|.++++|++|.+-..-...+....|..- =.+..+++++|
T Consensus 150 ~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g-H~~~~~~~~~~ 228 (482)
T KOG0379|consen 150 TWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG-HAMVVVGNKLL 228 (482)
T ss_pred cEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC-ceEEEECCeEE
Confidence 654433321 2466678888899999422 67999999999996544444543233221 02556677777
Q ss_pred E------EecCCCeEEEEeCCCC
Q 019103 250 A------NVWQTDCIARISHEDG 266 (346)
Q Consensus 250 a------Nv~~sn~I~vID~~TG 266 (346)
+ ..-..+++..+|..+.
T Consensus 229 v~gG~~~~~~~l~D~~~ldl~~~ 251 (482)
T KOG0379|consen 229 VFGGGDDGDVYLNDVHILDLSTW 251 (482)
T ss_pred EEeccccCCceecceEeeecccc
Confidence 6 3334578999999993
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.77 E-value=10 Score=39.83 Aligned_cols=164 Identities=13% Similarity=0.012 Sum_probs=102.6
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCC-EEEEEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCE
Q 019103 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGE-KLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKV 202 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~-~LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~ 202 (346)
++..|..+|....+......-.-..=--|+....+ .....--.+|.++|+|..+.+++.+|... +=-..+.+|-..-
T Consensus 278 r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 278 RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSG 357 (484)
T ss_pred CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccC
Confidence 45577777777765444311111111234555443 34445577899999999888888888643 1123345676666
Q ss_pred EEEEC-C--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC--CEEEEEecC-CCeEEEEeCCCCeEEEEEECCc
Q 019103 203 LFGSD-G--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK--GEVWANVWQ-TDCIARISHEDGVVLGWVLLPN 276 (346)
Q Consensus 203 LyvSd-G--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~--G~LyaNv~~-sn~I~vID~~TG~Vv~~I~l~~ 276 (346)
|.++= | +..|.+.|+.+++.+..+..+.. |- -|-|-. +++-.+... .|.|.+=+-.+-+.++.+.-
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ---Vc---sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-- 429 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGARIDSVDTGSQ---VC---SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-- 429 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcEecccccCCc---ee---eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC--
Confidence 66665 4 66999999999999988887652 21 244442 456666644 45677777777666665532
Q ss_pred hhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 277 LRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 277 l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
+ ..-|+. +|++|||.++.+.+
T Consensus 430 -------H---~~RVl~-la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 430 -------H---TSRVLY-LALSPDGETIVTGA 450 (484)
T ss_pred -------C---cceeEE-EEECCCCCEEEEec
Confidence 1 122776 99999988766554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.75 E-value=4.6 Score=42.69 Aligned_cols=176 Identities=11% Similarity=0.015 Sum_probs=105.3
Q ss_pred EEEEcCCCCCCeEEEEECCCCc----EEEEeccC-CCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEecC--
Q 019103 118 LFESTGLYGRSSVRRVALETGK----VEAINQME-GSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-- 189 (346)
Q Consensus 118 LyeStGlyg~s~V~~iDl~Tgk----v~~~~~l~-~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-- 189 (346)
-|.+++ .++++++||...-| |+.....+ .+.=..-++... +.++.+--.++.|-+.|...+.+--.+.+.
T Consensus 283 ~FlT~s--~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A 360 (641)
T KOG0772|consen 283 EFLTCS--YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA 360 (641)
T ss_pred ceEEec--CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec
Confidence 577888 55699999988754 33322222 222233344432 455666777888888886555444444331
Q ss_pred -----CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeecee-eEeeCCEEEE------EecCCCe
Q 019103 190 -----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE-LEFIKGEVWA------NVWQTDC 257 (346)
Q Consensus 190 -----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE-LE~~~G~Lya------Nv~~sn~ 257 (346)
.-.-..+++||++|..=-.++++-++|...++.--.+..+-. .++...|- ... +.+|.+ |--....
T Consensus 361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSP-DDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC-ccCCCCccccCC-CceEEEecccccCCCCCce
Confidence 112345788999887644589999999998875322222210 11111111 111 334332 2223457
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+...|+.|...+.+|++++. ...-++|+|.-+.+|++..+
T Consensus 439 L~f~d~~t~d~v~ki~i~~a-------------Svv~~~WhpkLNQi~~gsgd 478 (641)
T KOG0772|consen 439 LFFFDRMTLDTVYKIDISTA-------------SVVRCLWHPKLNQIFAGSGD 478 (641)
T ss_pred EEEEeccceeeEEEecCCCc-------------eEEEEeecchhhheeeecCC
Confidence 99999999999999988532 23457899999999988665
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.75 E-value=1.4 Score=46.32 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=74.1
Q ss_pred cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcE--EEEeccCCCeeE-E--EEEEeCCEEEEEE-----eeCC
Q 019103 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV--EAINQMEGSYFG-E--GLTLLGEKLFQVT-----WLQK 170 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv--~~~~~l~~~~Fg-e--Git~~g~~LY~lt-----w~~~ 170 (346)
|++..=+..+.|+.||..+.|-| +++++.+||++.-|- .-...|+. +|. . +++++.+.|+..+ -..+
T Consensus 361 H~~g~~Itsi~FS~dg~~LlSRg--~D~tLKvWDLrq~kkpL~~~tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g 437 (641)
T KOG0772|consen 361 HLPGQDITSISFSYDGNYLLSRG--FDDTLKVWDLRQFKKPLNVRTGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAG 437 (641)
T ss_pred cCCCCceeEEEeccccchhhhcc--CCCceeeeeccccccchhhhcCCCc-cCCCCccccCCCceEEEecccccCCCCCc
Confidence 66655567899999999999988 788999999998653 22223332 232 2 2333434444332 2256
Q ss_pred EEEEEECCCCcEEEEEecCCCceeE-Ee--eCCCEEEEECCCCeEEEE-eCC
Q 019103 171 TGFIYDQNNLNKLEEFTHQMKDGWG-LA--TDGKVLFGSDGSSMLYQI-DPQ 218 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~peGwG-Lt--~Dg~~LyvSdGs~~l~vI-Dp~ 218 (346)
.+++||+.|+..+.+|++. ..-.. .. |-=+.++++-|+..++++ ||.
T Consensus 438 ~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 438 TLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred eEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 8999999999999999985 12222 22 334567887776777765 543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.62 E-value=9.3 Score=39.61 Aligned_cols=149 Identities=11% Similarity=0.112 Sum_probs=77.0
Q ss_pred eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEE--EEEe
Q 019103 151 FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR--KDIV 228 (346)
Q Consensus 151 FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~--~I~V 228 (346)
|+..+...++.=|++.-.++.-.+|....++..+.-+ + -......+++ ..+-+.+++|-++. +++... ++++
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~-g--~~~vw~~~n~-yAv~~~~~~I~I~k--n~~~~~~k~i~~ 107 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS-G--LSFVWSSRNR-YAVLESSSTIKIYK--NFKNEVVKSIKL 107 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE----SEEEE-TSSE-EEEE-TTS-EEEEE--TTEE-TT-----
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc-e--eEEEEecCcc-EEEEECCCeEEEEE--cCccccceEEcC
Confidence 4555666544334444668888888876666644322 1 1222333333 33335466666652 333333 5555
Q ss_pred ccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 229 RYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
... ...| ..|.|..-. .++.|...|.++++++.+|+++++ ..+.|+++++.+-+++
T Consensus 108 ~~~------~~~I--f~G~LL~~~-~~~~i~~yDw~~~~~i~~i~v~~v---------------k~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 108 PFS------VEKI--FGGNLLGVK-SSDFICFYDWETGKLIRRIDVSAV---------------KYVIWSDDGELVALVT 163 (443)
T ss_dssp SS-------EEEE--E-SSSEEEE-ETTEEEEE-TTT--EEEEESS-E----------------EEEEE-TTSSEEEEE-
T ss_pred Ccc------cceE--EcCcEEEEE-CCCCEEEEEhhHcceeeEEecCCC---------------cEEEEECCCCEEEEEe
Confidence 321 1112 236655433 255799999999999999977332 4588999999999998
Q ss_pred CCCCcEEEEEEeeccccccCC
Q 019103 309 KLWPKLYEINLREMKRERKDG 329 (346)
Q Consensus 309 K~Wp~l~ev~l~~~~~~~~~~ 329 (346)
|.-=.+++-.+....+..++|
T Consensus 164 ~~~i~il~~~~~~~~~~~~~g 184 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAAIPEEG 184 (443)
T ss_dssp S-SEEEEEE-HHHHHHBTTTB
T ss_pred CCeEEEEEecchhcccccccC
Confidence 887777777766555566677
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.54 E-value=5.3 Score=41.58 Aligned_cols=114 Identities=18% Similarity=0.078 Sum_probs=76.9
Q ss_pred CEEEEEcCCC--C--CCeEEEEECCCCcEEEEec---cCCCeeEEEEEEeCCEEEEE---Ee---eCCEEEEEECCCCcE
Q 019103 116 DTLFESTGLY--G--RSSVRRVALETGKVEAINQ---MEGSYFGEGLTLLGEKLFQV---TW---LQKTGFIYDQNNLNK 182 (346)
Q Consensus 116 ~~LyeStGly--g--~s~V~~iDl~Tgkv~~~~~---l~~~~FgeGit~~g~~LY~l---tw---~~~~v~V~D~~tl~~ 182 (346)
+.||+=.|.. . -..|+.+|+.|++-..... .|+.-.+..++..+++||+- ++ ..+.+++||+.+.+-
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W 202 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTW 202 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccc
Confidence 5677665532 1 1389999999998655443 35556789999999999985 22 358899999998773
Q ss_pred EEEEec-C----CCceeEEeeCCCEEEEE---C----CCCeEEEEeCCCCcEEEEEEecc
Q 019103 183 LEEFTH-Q----MKDGWGLATDGKVLFGS---D----GSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 183 i~ti~~-~----~peGwGLt~Dg~~LyvS---d----Gs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
. ++.+ + ...|-+++-.++++|+- + .-+.++.+|..+.+-....+-++
T Consensus 203 ~-~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~ 261 (482)
T KOG0379|consen 203 S-ELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGD 261 (482)
T ss_pred e-ecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCC
Confidence 3 3332 1 13666777667777763 2 25789999999977763333343
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=90.50 E-value=25 Score=36.87 Aligned_cols=174 Identities=13% Similarity=0.088 Sum_probs=103.1
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEec
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH 188 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~ 188 (346)
-|-...+|+-+.|.| -+.++..||..+|.+..+..+...+ +--+...++.=|+..-.++.++|+-..--+.+++|..
T Consensus 281 slKWnk~G~yilS~~--vD~ttilwd~~~g~~~q~f~~~s~~-~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G 357 (524)
T KOG0273|consen 281 SLKWNKKGTYILSGG--VDGTTILWDAHTGTVKQQFEFHSAP-ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG 357 (524)
T ss_pred EEEEcCCCCEEEecc--CCccEEEEeccCceEEEeeeeccCC-ccceEEecCceEeecCCCceEEEEEecCCCcceeeec
Confidence 444555666677877 4569999999999999998887643 2222334556666666678888887777777788764
Q ss_pred CCCceeEEeeC--CCEEEEECCCCeEEEEe-----------CCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCC
Q 019103 189 QMKDGWGLATD--GKVLFGSDGSSMLYQID-----------PQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQT 255 (346)
Q Consensus 189 ~~peGwGLt~D--g~~LyvSdGs~~l~vID-----------p~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~s 255 (346)
-..+=-+|-+| |..|-.+-.+.++-++. ..+.++ -+|.=.-.|.-..++|+ |...+..-.+
T Consensus 358 H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei-~t~~wsp~g~v~~n~~~-----~~~l~sas~d 431 (524)
T KOG0273|consen 358 HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI-YTIKWSPTGPVTSNPNM-----NLMLASASFD 431 (524)
T ss_pred ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccce-eeEeecCCCCccCCCcC-----CceEEEeecC
Confidence 22233344443 55555533344444444 222222 12211111111122222 4455555578
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEE
Q 019103 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRI 304 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~L 304 (346)
++|.+-|.+.|..+.++.= ++ .--+.+||+|++.++
T Consensus 432 stV~lwdv~~gv~i~~f~k---------H~----~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 432 STVKLWDVESGVPIHTLMK---------HQ----EPVYSVAFSPNGRYL 467 (524)
T ss_pred CeEEEEEccCCceeEeecc---------CC----CceEEEEecCCCcEE
Confidence 9999999999999988621 11 124678899887743
|
|
| >PF14298 DUF4374: Domain of unknown function (DUF4374) | Back alignment and domain information |
|---|
Probab=90.28 E-value=5 Score=41.55 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=38.0
Q ss_pred eeCCEEEEEECCCCcEEEEEecCCC--ceeE---EeeCCCEEEE----ECC-CCeEEEEeCCCCcEEEEEEe
Q 019103 167 WLQKTGFIYDQNNLNKLEEFTHQMK--DGWG---LATDGKVLFG----SDG-SSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~~~p--eGwG---Lt~Dg~~Lyv----SdG-s~~l~vIDp~T~kvi~~I~V 228 (346)
+..++..|+|..+.+...--..+.. .+++ +. +++.+|+ .+| ...||.|||+|.+.++=++|
T Consensus 364 ~~~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~v-e~G~aYi~Vtt~~g~~~~IY~iDp~TatAtKGl~V 434 (435)
T PF14298_consen 364 SDAKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYV-ENGKAYIPVTTEDGSDPYIYKIDPATATATKGLKV 434 (435)
T ss_pred CccceEEEEEccCceeEEeccCChhhccccccceEe-eCCEEEEEEeecCCCceeEEEEcCcccccccceEe
Confidence 4467888999876554443222211 3444 33 4455665 246 47999999999998776555
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.24 E-value=6.7 Score=41.55 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=77.6
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCE---EEEEEeeCCEEEEEECCCCcEEEEEecC--CC
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEK---LFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MK 191 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~---LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~p 191 (346)
.|..+++ ...|..++...|++..+...+..|=+.-...++++ ||-. -.+.++..++.++.+.+..+..+ .+
T Consensus 72 ~lvlgt~---~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~-~ad~~v~~~~~~~~~~~~~~~~~~~~~ 147 (541)
T KOG4547|consen 72 MLVLGTP---QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSV-GADLKVVYILEKEKVIIRIWKEQKPLV 147 (541)
T ss_pred EEEeecC---CccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEec-CCceeEEEEecccceeeeeeccCCCcc
Confidence 3455655 35899999999999999988877644444555544 5544 34577888899999998888764 34
Q ss_pred ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019103 192 DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 192 eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
.-.-+++||+.|.++ +.+|.++|.+|.+++.+.+
T Consensus 148 ~sl~is~D~~~l~~a--s~~ik~~~~~~kevv~~ft 181 (541)
T KOG4547|consen 148 SSLCISPDGKILLTA--SRQIKVLDIETKEVVITFT 181 (541)
T ss_pred ceEEEcCCCCEEEec--cceEEEEEccCceEEEEec
Confidence 445678999988875 6799999999999875554
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=90.04 E-value=3.1 Score=43.81 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=99.3
Q ss_pred EEEeCCEEEEEEeeCCEEEEEECC---CCcEEEEEecCCCce----eEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019103 155 LTLLGEKLFQVTWLQKTGFIYDQN---NLNKLEEFTHQMKDG----WGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 155 it~~g~~LY~ltw~~~~v~V~D~~---tl~~i~ti~~~~peG----wGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
+++.+..=+|-|-..+-|-|.|.. +...+..++-..++- .-|.+||..|++--..++|.++|.++-+..-+-+
T Consensus 425 vtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae 504 (705)
T KOG0639|consen 425 VTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE 504 (705)
T ss_pred EEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh
Confidence 444454444445556777777754 333444444322232 2378999999996558899999977644432223
Q ss_pred eccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019103 228 VRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 228 V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
....+-..+. |..- |-+|--++..+..|.|-|..+..++..+. |.++ --..|-+++||-+||
T Consensus 505 ltssapaCyA---La~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-----------GhtD--GascIdis~dGtklW- 567 (705)
T KOG0639|consen 505 LTSSAPACYA---LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-----------GHTD--GASCIDISKDGTKLW- 567 (705)
T ss_pred cCCcchhhhh---hhcCCccceeeeeccCCcEEEEEcccceeeeccc-----------CCCC--CceeEEecCCCceee-
Confidence 3322222221 2222 44555555568889999999998887661 1222 235688999999998
Q ss_pred ecCCCCcEEEEEEeeccccccCCC
Q 019103 307 TGKLWPKLYEINLREMKRERKDGF 330 (346)
Q Consensus 307 TGK~Wp~l~ev~l~~~~~~~~~~~ 330 (346)
||...+.+.-=+|.+.++..+-.|
T Consensus 568 TGGlDntvRcWDlregrqlqqhdF 591 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQHDF 591 (705)
T ss_pred cCCCccceeehhhhhhhhhhhhhh
Confidence 777888888878877776666654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.69 E-value=8.2 Score=41.52 Aligned_cols=185 Identities=11% Similarity=0.163 Sum_probs=100.7
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
..+|.+++.|..+.|.+ .+.+|++|...||+-+..+.++...--....+.++.-..+.-.+..++++|+.=+..+..-
T Consensus 403 Vr~iSvdp~G~wlasGs--dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~ 480 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGS--DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVG 480 (733)
T ss_pred EEEEEecCCcceeeecC--CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhc
Confidence 36777877666666666 5669999999999999999999866444444444443333333444999998655332221
Q ss_pred ecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEE---EEEeccCCeeeeeceeeEee-CCEEEEEecCC---CeEE
Q 019103 187 THQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR---KDIVRYKGREVRNLNELEFI-KGEVWANVWQT---DCIA 259 (346)
Q Consensus 187 ~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~---~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s---n~I~ 259 (346)
+.. +-.+=.+. -+.-..++..+-.+..+... .+.+. +++++ +.++|. .|.-+|++-.+ ..|+
T Consensus 481 ~t~--ell~~~~~-----~~~p~~~~~~W~~~~~~e~~~~v~~~I~-~~k~i---~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 481 PTK--ELLASAPN-----ESEPDAAVVTWSRASLDELEKGVCIVIK-HPKSI---RQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred chh--hhhhcCCC-----ccCCcccceeechhhhhhhccceEEEEe-cCCcc---ceeeeecCCceEEEeccCCCcceEE
Confidence 111 10010100 00112233333333222111 22332 23443 467787 45555555332 2344
Q ss_pred EEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 260 RISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 260 vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
+=+...++.. . .++. ....+-.+.|.|-..+|||+-|+.=.+|-+
T Consensus 550 iHQLSK~~sQ--~---PF~k--------skG~vq~v~FHPs~p~lfVaTq~~vRiYdL 594 (733)
T KOG0650|consen 550 IHQLSKRKSQ--S---PFRK--------SKGLVQRVKFHPSKPYLFVATQRSVRIYDL 594 (733)
T ss_pred EEeccccccc--C---chhh--------cCCceeEEEecCCCceEEEEeccceEEEeh
Confidence 4444444432 2 1211 122345688999999999999999888865
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=89.68 E-value=17 Score=33.72 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=93.0
Q ss_pred EEEEEcCCCCCCeEEEEECCC----C-cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCC
Q 019103 117 TLFESTGLYGRSSVRRVALET----G-KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK 191 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~T----g-kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~p 191 (346)
.|.++.. .+|.++.... . +..+++.++..+ ..++..++.+.+.+ .+.-.++|..++....-++....
T Consensus 107 ~L~va~k----k~i~i~~~~~~~~~f~~~~ke~~lp~~~--~~i~~~~~~i~v~~--~~~f~~idl~~~~~~~l~~~~~~ 178 (275)
T PF00780_consen 107 RLCVAVK----KKILIYEWNDPRNSFSKLLKEISLPDPP--SSIAFLGNKICVGT--SKGFYLIDLNTGSPSELLDPSDS 178 (275)
T ss_pred EEEEEEC----CEEEEEEEECCcccccceeEEEEcCCCc--EEEEEeCCEEEEEe--CCceEEEecCCCCceEEeCccCC
Confidence 3555544 2777776654 2 677888888776 44777799999888 67788899987766544432210
Q ss_pred -----------ceeEE--eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeE
Q 019103 192 -----------DGWGL--ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCI 258 (346)
Q Consensus 192 -----------eGwGL--t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I 258 (346)
...++ -++++.|..-| +.-.++|.+ ++..++-.+.....|. .+.+...+|++- ..+.|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~--~~g~fv~~~-G~~~r~~~i~W~~~p~----~~~~~~pyli~~--~~~~i 249 (275)
T PF00780_consen 179 SSSFKSRNSSSKPLGIFQLSDNEFLLCYD--NIGVFVNKN-GEPSRKSTIQWSSAPQ----SVAYSSPYLIAF--SSNSI 249 (275)
T ss_pred cchhhhcccCCCceEEEEeCCceEEEEec--ceEEEEcCC-CCcCcccEEEcCCchh----EEEEECCEEEEE--CCCEE
Confidence 11222 23455555443 566677753 4444444444433443 367777888873 56889
Q ss_pred EEEeCCCCeEEEEEECCchh
Q 019103 259 ARISHEDGVVLGWVLLPNLR 278 (346)
Q Consensus 259 ~vID~~TG~Vv~~I~l~~l~ 278 (346)
-+.+..+|+.+.+|++++++
T Consensus 250 EV~~~~~~~lvQ~i~~~~~~ 269 (275)
T PF00780_consen 250 EVRSLETGELVQTIPLPNIR 269 (275)
T ss_pred EEEECcCCcEEEEEECCCEE
Confidence 99999999999999876543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.64 E-value=4.1 Score=41.89 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=59.0
Q ss_pred EEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe---------CCEEEEEEeeCCEEEEEEC---CCCcEEEEEe
Q 019103 120 ESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL---------GEKLFQVTWLQKTGFIYDQ---NNLNKLEEFT 187 (346)
Q Consensus 120 eStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~---------g~~LY~ltw~~~~v~V~D~---~tl~~i~ti~ 187 (346)
+..|+|| +.+++|.-.+++..+.++++.. |+.+. .+.-|+---.+..++-+=. +|.+....+.
T Consensus 222 v~d~lyg-~~lhvy~w~~~~~~QtidL~~~----gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~vis 296 (476)
T KOG0918|consen 222 VEDGLYG-SHLHVYQWSPGELKQTIDLGDT----GLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVIS 296 (476)
T ss_pred hhcccee-eeeEEEecCCccceeEEecCCC----CcceEEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEe
Confidence 4456777 6999999999999999988762 22221 1334443333333332211 2222222222
Q ss_pred cC--CCceeE------------EeeCCCEEEEEC-CCCeEEEE---eCCCCcEEEEEEecc
Q 019103 188 HQ--MKDGWG------------LATDGKVLFGSD-GSSMLYQI---DPQTLKVIRKDIVRY 230 (346)
Q Consensus 188 ~~--~peGwG------------Lt~Dg~~LyvSd-Gs~~l~vI---Dp~T~kvi~~I~V~~ 230 (346)
++ .-++|- ++-|.++||+|+ -...|... ||.+-++...|-+|.
T Consensus 297 vp~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG 357 (476)
T KOG0918|consen 297 VPPLKVENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGG 357 (476)
T ss_pred cCccccccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECc
Confidence 21 123332 456899999998 45555555 466666666666653
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.55 Score=38.00 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=25.3
Q ss_pred ceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 290 DVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 290 ~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
..+|||+++|+++.|||+.=.-.+|+.-+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 468999999999999999877777776654
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.46 E-value=18 Score=36.90 Aligned_cols=194 Identities=12% Similarity=0.034 Sum_probs=117.9
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
.++|...|.-.+++++| -++.+++||..|..-+..+.=...+ +-.-+...+..+|... .+..|-..|...++-..+
T Consensus 238 V~~L~lhPTldvl~t~g--rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S-~D~tvrlWDl~agkt~~t 314 (460)
T KOG0285|consen 238 VYCLDLHPTLDVLVTGG--RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS-HDSTVRLWDLRAGKTMIT 314 (460)
T ss_pred eEEEeccccceeEEecC--CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec-CCceEEEeeeccCceeEe
Confidence 36777777667788888 6789999999998655554322222 2222233455666554 357888899888888777
Q ss_pred EecCCCceeEEe-eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCC
Q 019103 186 FTHQMKDGWGLA-TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHE 264 (346)
Q Consensus 186 i~~~~peGwGLt-~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~ 264 (346)
+.+-...-.+++ +....+|+|-+.+.+-.++...++....+.-.. ..+|.|+.-.+-+|+.-.....|..=|.+
T Consensus 315 lt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~-----~iintl~~nsD~v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 315 LTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHN-----AIINTLSVNSDGVLVSGGDNGSIMFWDWK 389 (460)
T ss_pred eecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccccc-----ceeeeeeeccCceEEEcCCceEEEEEecC
Confidence 765322333454 235578999899999999977777666633221 24566766544455544445567888888
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
+|---..... -..+.. ...+.-...-+||..+-|| |||.-.-+|
T Consensus 390 sg~nyQ~~~t-~vqpGS----l~sEagI~as~fDktg~rl-it~eadKtI 433 (460)
T KOG0285|consen 390 SGHNYQRGQT-IVQPGS----LESEAGIFASCFDKTGSRL-ITGEADKTI 433 (460)
T ss_pred cCcccccccc-cccCCc----cccccceeEEeecccCceE-EeccCCcce
Confidence 8864433311 001110 0123345667898766664 677666554
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.21 E-value=2.1 Score=43.63 Aligned_cols=111 Identities=18% Similarity=0.188 Sum_probs=68.9
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCC------eeEEEEEEeCCEEEEEEee--CCEEEEEECC
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGS------YFGEGLTLLGEKLFQVTWL--QKTGFIYDQN 178 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~------~FgeGit~~g~~LY~ltw~--~~~v~V~D~~ 178 (346)
.-|.|++||+++++.| ++ ..++||.++|--+++.. .+.. .|+. ...+..||+++-. .+.+-..|..
T Consensus 190 ~DL~FS~dgk~lasig--~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~~~~~v~~~~~~ 264 (398)
T KOG0771|consen 190 KDLDFSPDGKFLASIG--AD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQFPGGGVRLCDIS 264 (398)
T ss_pred ccceeCCCCcEEEEec--CC-ceEEEEeccCchhhhcCCcccchhhhhceecc--cCCCceEEEEEecCCCCceeEEEee
Confidence 6899999999998887 54 99999999995444442 3322 1331 1122345555433 3444445543
Q ss_pred CC---------cEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEE
Q 019103 179 NL---------NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (346)
Q Consensus 179 tl---------~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~ 225 (346)
.. +.+..++. -.-+.++.||+.+-+.--++.|.++|..+++...-
T Consensus 265 ~w~~~~~l~~~~~~~~~~s--iSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~ 318 (398)
T KOG0771|consen 265 LWSGSNFLRLRKKIKRFKS--ISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY 318 (398)
T ss_pred eeccccccchhhhhhccCc--ceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe
Confidence 22 22333321 23457889999887744488999999988776543
|
|
| >KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.52 Score=48.15 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=54.4
Q ss_pred CcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCC---cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 105 AFTQGLLYAEND-TLFESTGLYGRSSVRRVALETG---KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 105 ~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tg---kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
+...-+.++=|+ .||+|+=+.| .|+.||...- ++..++-++ |+-..+..+-++.....+ .-++.+
T Consensus 312 ~LITDilISmDDRFLYvs~WLHG--DirQYdIsDP~n~kLtgQi~lG------G~i~~~s~vkvl~~e~~~---~~~ea~ 380 (476)
T KOG0918|consen 312 GLITDILISLDDRFLYVSNWLHG--DIRQYDISDPKNPKLTGQIFLG------GSIQKGSPVKVLEEEGLK---KQPEAL 380 (476)
T ss_pred hhhheeEEeecCcEEEEEeeeec--ceeeeccCCCCCcceEEEEEEC------cEeecCCceEEecccccc---CCCccc
Confidence 334455666555 5999998877 7999987653 344444443 333333334444333211 233344
Q ss_pred cEEEEEecCCCceeEEeeCCCEEEEECC
Q 019103 181 NKLEEFTHQMKDGWGLATDGKVLFGSDG 208 (346)
Q Consensus 181 ~~i~ti~~~~peGwGLt~Dg~~LyvSdG 208 (346)
.+.++==-+.|.-.-|+-||++|||++.
T Consensus 381 ~vKGrkl~GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 381 YVKGRKLRGGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred eecCccccCCceeEEeccCCcEEEEEch
Confidence 4444322234888899999999999874
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=89.09 E-value=12 Score=37.29 Aligned_cols=193 Identities=17% Similarity=0.215 Sum_probs=114.8
Q ss_pred eeEEEecCC-----EEEEEcCCCCCCeEEEEECC--CCcEEEEeccC---CCeeEEEEEEe--C---CEEEEEEeeCCEE
Q 019103 108 QGLLYAEND-----TLFESTGLYGRSSVRRVALE--TGKVEAINQME---GSYFGEGLTLL--G---EKLFQVTWLQKTG 172 (346)
Q Consensus 108 qGL~~~~d~-----~LyeStGlyg~s~V~~iDl~--Tgkv~~~~~l~---~~~FgeGit~~--g---~~LY~ltw~~~~v 172 (346)
.-+.+.|+. .|+-++| + .++.|-.. .+++.-+.-|. ...|+.-+|-. + -.+....--+-+.
T Consensus 100 tK~~wiPd~~g~~pdlLATs~--D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC 175 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLATSS--D--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC 175 (364)
T ss_pred cceEecCCccccCcchhhccc--C--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeE
Confidence 345666554 4777777 3 56665444 56655544332 34455545542 1 2344444557788
Q ss_pred EEEECCCCcE---EE-EEecCCCceeEE--eeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC
Q 019103 173 FIYDQNNLNK---LE-EFTHQMKDGWGL--ATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (346)
Q Consensus 173 ~V~D~~tl~~---i~-ti~~~~peGwGL--t~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~ 245 (346)
.|+|.++... .. -|.+. +|=+.+ ..++..+|+|=| ++.+.++|...++ +...+.+++.|-..|-.|++-+
T Consensus 176 TiWdie~~~~~~vkTQLIAHD-KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le--HSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 176 TIWDIETGVSGTVKTQLIAHD-KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE--HSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred EEEEEeeccccceeeEEEecC-cceeEEEeccCccceEEEecCCCcEEEEEecccc--cceEEecCCCCCCcceeeccCc
Confidence 8999887622 22 24554 444444 446688999986 7899999998654 3444555556555565676664
Q ss_pred C--EEEEEec-CCCeEEEEeCCCCe-EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 246 G--EVWANVW-QTDCIARISHEDGV-VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 246 G--~LyaNv~-~sn~I~vID~~TG~-Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
. +..|+.- .++.|.++|...=. .++++ +. + ....|||||.|....-..|+...-...-=+|.
T Consensus 253 qDpnymATf~~dS~~V~iLDiR~P~tpva~L-----~~----H----~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 253 QDPNYMATFAMDSNKVVILDIRVPCTPVARL-----RN----H----QASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CCchHHhhhhcCCceEEEEEecCCCcceehh-----hc----C----cccccceEecCCCCceeeecCCcceEEEEecc
Confidence 3 3445553 37789999976532 22222 21 1 23579999999988777777666544444443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.50 E-value=2.9 Score=45.71 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=80.2
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe--eEEEEEEeCCEEEEEE-eeCCEEEEEECCCCcEEEE
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY--FGEGLTLLGEKLFQVT-WLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~--FgeGit~~g~~LY~lt-w~~~~v~V~D~~tl~~i~t 185 (346)
-++++|+-.+.++.+ -+-.|++||..+||..+..+=.... --.-+.++..-+|++| ..+..+.+||--+++.+++
T Consensus 601 Dm~Vdp~~k~v~t~c--QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVC--QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EeeeCCCcceEEEEe--cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 456666555555655 3458999999999998887543211 1233556778899886 6677899999999999998
Q ss_pred Eec--CCCceeEEeeCCCEEEEECCCCeEEEEeC
Q 019103 186 FTH--QMKDGWGLATDGKVLFGSDGSSMLYQIDP 217 (346)
Q Consensus 186 i~~--~~peGwGLt~Dg~~LyvSdGs~~l~vIDp 217 (346)
..- +.-.|+-+++|=++|+-.-|++-|+|+-.
T Consensus 679 m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred hcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 753 23467789999999999889999999984
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=88.31 E-value=1.3 Score=36.09 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=33.6
Q ss_pred CCEEEEEECCCCcEEEEEe-cCCCceeEEeeCCCEEEEEC-CCCeEEEE
Q 019103 169 QKTGFIYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQI 215 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~-~~~peGwGLt~Dg~~LyvSd-Gs~~l~vI 215 (346)
+++++.||++|.+..--.. ...|.|.+|++|++.|++++ +..+|+-.
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRY 84 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEE
Confidence 5788999999986533332 12479999999999999998 56666544
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.23 E-value=30 Score=34.59 Aligned_cols=208 Identities=12% Similarity=0.119 Sum_probs=112.2
Q ss_pred cCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEE---EEEeeCCEEEEEE
Q 019103 101 HDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLF---QVTWLQKTGFIYD 176 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY---~ltw~~~~v~V~D 176 (346)
|+...+ -..++.||. +|.+ + -+.++..||+++|++. ++.+..++. .-+...++-+| +..-.+.++-..|
T Consensus 71 ~~~PvL--~v~WsddgskVf~g-~--~Dk~~k~wDL~S~Q~~-~v~~Hd~pv-kt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 71 HDGPVL--DVCWSDDGSKVFSG-G--CDKQAKLWDLASGQVS-QVAAHDAPV-KTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred cCCCeE--EEEEccCCceEEee-c--cCCceEEEEccCCCee-eeeecccce-eEEEEecCCCcceeEecccccceeecc
Confidence 544443 667777885 5544 4 3569999999999653 444433332 22444444344 3334468899999
Q ss_pred CCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE-EEEEEec--cCCeeeeeceeeEee--CCEEEEE
Q 019103 177 QNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVR--YKGREVRNLNELEFI--KGEVWAN 251 (346)
Q Consensus 177 ~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv-i~~I~V~--~~G~pv~~lNELE~~--~G~LyaN 251 (346)
+..-..+.++..+ .--++++--...+.|+-+...|.+++.++... .++++-. ..-+-+. -+. +|++...
T Consensus 144 ~R~~~pv~t~~LP-eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va-----~f~d~~~~alGs 217 (347)
T KOG0647|consen 144 TRSSNPVATLQLP-ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA-----CFQDKDGFALGS 217 (347)
T ss_pred cCCCCeeeeeecc-ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE-----EEecCCceEeee
Confidence 9999999999875 23344444456678888888899998865332 2222211 0001110 011 2333344
Q ss_pred ecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC-----CCcEEEEEEeecccc
Q 019103 252 VWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL-----WPKLYEINLREMKRE 325 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~-----Wp~l~ev~l~~~~~~ 325 (346)
+...=.|--||...-+.--++... +.. ....++.=-.|.|||.|..++|--.|-. |++=-+-||.....+
T Consensus 218 iEGrv~iq~id~~~~~~nFtFkCH--R~~--~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 218 IEGRVAIQYIDDPNPKDNFTFKCH--RST--NSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred ecceEEEEecCCCCccCceeEEEe--ccC--CCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 433333444555433322222110 000 0000112246999999988877776653 666666666544333
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.06 E-value=33 Score=34.97 Aligned_cols=181 Identities=10% Similarity=0.042 Sum_probs=116.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCC---cEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNL---NKL 183 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl---~~i 183 (346)
+-..|-|.|.-..|++ -+.+|..||.+||--+...+-.++ +-.=+.+.+ ++|+.+--+++++.|.=.++. .++
T Consensus 197 S~V~f~P~gd~ilS~s--rD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l 273 (406)
T KOG0295|consen 197 SSVFFLPLGDHILSCS--RDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL 273 (406)
T ss_pred eeEEEEecCCeeeecc--cccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh
Confidence 5566777776667888 456999999999987777655443 444455544 567777777787777666666 222
Q ss_pred EEEecCCCceeEEee---------------CCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCE
Q 019103 184 EEFTHQMKDGWGLAT---------------DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE 247 (346)
Q Consensus 184 ~ti~~~~peGwGLt~---------------Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~ 247 (346)
....++ -|-....| .++.|...-.+.+|-++|..|...+=++.-.+++. -++.+. +|+
T Consensus 274 R~hEh~-vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV-----r~~af~p~Gk 347 (406)
T KOG0295|consen 274 REHEHP-VECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV-----RGVAFSPGGK 347 (406)
T ss_pred hccccc-eEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccccee-----eeeEEcCCCe
Confidence 222221 12222211 13466665678999999999998887665544321 134454 466
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC
Q 019103 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW 311 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W 311 (346)
-.+.+-.+.++-+=|.+++++..+++... -+-+-++|+.+ .-..|||...
T Consensus 348 yi~ScaDDktlrvwdl~~~~cmk~~~ah~-------------hfvt~lDfh~~-~p~VvTGsVd 397 (406)
T KOG0295|consen 348 YILSCADDKTLRVWDLKNLQCMKTLEAHE-------------HFVTSLDFHKT-APYVVTGSVD 397 (406)
T ss_pred EEEEEecCCcEEEEEeccceeeeccCCCc-------------ceeEEEecCCC-CceEEecccc
Confidence 66777778899999999999998885422 24566777643 3355676543
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.3 Score=29.91 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=23.6
Q ss_pred cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019103 139 KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 139 kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
+++=+.+++. ++-.+.++.+++||+.++ ++.++.+|++|
T Consensus 2 ~~~W~~~~~~-~~~~~~~v~~g~vyv~~~-dg~l~ald~~t 40 (40)
T PF13570_consen 2 KVLWSYDTGG-PIWSSPAVAGGRVYVGTG-DGNLYALDAAT 40 (40)
T ss_dssp -EEEEEE-SS----S--EECTSEEEEE-T-TSEEEEEETT-
T ss_pred ceeEEEECCC-CcCcCCEEECCEEEEEcC-CCEEEEEeCCC
Confidence 3333445554 334557889999999998 79999999875
|
|
| >KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.94 E-value=7.4 Score=37.50 Aligned_cols=134 Identities=14% Similarity=0.187 Sum_probs=80.8
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE------------EEEEEeCCEEEEE--EeeC--CEE
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFG------------EGLTLLGEKLFQV--TWLQ--KTG 172 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg------------eGit~~g~~LY~l--tw~~--~~v 172 (346)
|-.+- +|.+|---. +...|.++|+.++.+.....++..-+. .-++.+.+-||+. |..+ +.+
T Consensus 72 g~VVy-nGs~yynk~--~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv 148 (249)
T KOG3545|consen 72 GHVVY-NGSLYYNKA--GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIV 148 (249)
T ss_pred ceEEE-cceEEeecc--CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEE
Confidence 44444 466665543 667899999999988777766532111 2244555667765 3333 233
Q ss_pred -EEEECCCCcEEEEEecC-----CCceeEEeeCCCEEEEECC----CCeE-EEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019103 173 -FIYDQNNLNKLEEFTHQ-----MKDGWGLATDGKVLFGSDG----SSML-YQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 173 -~V~D~~tl~~i~ti~~~-----~peGwGLt~Dg~~LyvSdG----s~~l-~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
..+|+.|++..++..+. ..+++-+| ..||+-+. +..| +..|+.+.+. .++.+.- .++..+++.+
T Consensus 149 ~skLdp~tl~~e~tW~T~~~k~~~~~aF~iC---GvLY~v~S~~~~~~~i~yaydt~~~~~-~~~~ipf-~N~y~~~~~i 223 (249)
T KOG3545|consen 149 LSKLDPETLEVERTWNTTLPKRSAGNAFMIC---GVLYVVHSYNCTHTQISYAYDTTTGTQ-ERIDLPF-PNPYSYATMI 223 (249)
T ss_pred eeccCHHHhheeeeeccccCCCCcCceEEEe---eeeEEEeccccCCceEEEEEEcCCCce-ecccccc-cchhhhhhcc
Confidence 56899999999988642 35777777 67888552 4455 7889888776 3444421 1233333333
Q ss_pred Eee--CCEEEE
Q 019103 242 EFI--KGEVWA 250 (346)
Q Consensus 242 E~~--~G~Lya 250 (346)
.|- |.+|||
T Consensus 224 dYNP~D~~LY~ 234 (249)
T KOG3545|consen 224 DYNPRDRRLYA 234 (249)
T ss_pred CCCcccceeeE
Confidence 332 567886
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.82 E-value=15 Score=39.97 Aligned_cols=204 Identities=14% Similarity=0.146 Sum_probs=115.0
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEE-EeCCEEEEEEeeCCEEE
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLT-LLGEKLFQVTWLQKTGF 173 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit-~~g~~LY~ltw~~~~v~ 173 (346)
.++++-- .....+||++-+++. |.|++ .+..|+.||. +|+++.+..= ...|-=-++ ..++.+.+++-.++++-
T Consensus 171 ~l~tf~g-HtD~VRgL~vl~~~~-flScs--NDg~Ir~w~~-~ge~l~~~~g-htn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 171 LLKTFSG-HTDCVRGLAVLDDSH-FLSCS--NDGSIRLWDL-DGEVLLEMHG-HTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred hhhhhcc-chhheeeeEEecCCC-eEeec--CCceEEEEec-cCceeeeeec-cceEEEEEEecCCCCeEEEecCCceEE
Confidence 4445542 344568999986544 44666 5669999999 6666655432 223333355 46788999999999999
Q ss_pred EEECCCCcEEEEEecCCCceeEEee-CCCEEEEECCCCeEEEEeCCCC-------------cEEE-----EEEeccCCee
Q 019103 174 IYDQNNLNKLEEFTHQMKDGWGLAT-DGKVLFGSDGSSMLYQIDPQTL-------------KVIR-----KDIVRYKGRE 234 (346)
Q Consensus 174 V~D~~tl~~i~ti~~~~peGwGLt~-Dg~~LyvSdGs~~l~vIDp~T~-------------kvi~-----~I~V~~~G~p 234 (346)
+.+.. +..+.|.++..-=|..+. +...+++.-.++.|+|+-...- ++.. +..+|+ ..
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~As~evl~afd~~v~s~~~~kt~~~g~--v~ 320 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKASDEVLKAFDAEVVSQISSKTEEVGG--VK 320 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccccCCHHHHHHHHHHHHhhhhhhhhhhCc--cc
Confidence 99977 777788877557788764 2444555333455555543211 1112 223321 00
Q ss_pred eeeceeeEeeCCEEEEEec--CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 235 VRNLNELEFIKGEVWANVW--QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 235 v~~lNELE~~~G~LyaNv~--~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
.. +| .+-+.+.... ...+..|-|.++.+...|..= .-+ .-+.-+..+.|.....++...-||.++
T Consensus 321 ~~---~l--Pg~e~L~spGt~dGq~~~Vr~~~~v~ayqws~~-e~r-------~ikdvig~~~~~~~~s~K~l~EGKeYD 387 (745)
T KOG0301|consen 321 KD---DL--PGLEILKSPGTRDGQTKVVRDGENVEAYQWSNG-EWR-------WIKDVIGEVVAAQGNSGKVLHEGKEYD 387 (745)
T ss_pred cc---cC--CchhhhcCCCCCCCcEEEEEcCCcceeEEeecc-cce-------eeccccccccccCCCCcceeecccccc
Confidence 00 00 0011222111 234566667777776666521 000 001112344555555557788899999
Q ss_pred cEEEEEEee
Q 019103 313 KLYEINLRE 321 (346)
Q Consensus 313 ~l~ev~l~~ 321 (346)
++|.|++-.
T Consensus 388 yvF~VDi~d 396 (745)
T KOG0301|consen 388 YVFDVDIGD 396 (745)
T ss_pred eEEEEEccC
Confidence 999999953
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=87.63 E-value=44 Score=37.39 Aligned_cols=190 Identities=18% Similarity=0.187 Sum_probs=107.3
Q ss_pred eeEEEec-CCEEEEEcCCCCCCeEEEEECC-CCcEEEEeccCC--CeeEEEEEEe------C-CEEEEEE-eeCCEEEEE
Q 019103 108 QGLLYAE-NDTLFESTGLYGRSSVRRVALE-TGKVEAINQMEG--SYFGEGLTLL------G-EKLFQVT-WLQKTGFIY 175 (346)
Q Consensus 108 qGL~~~~-d~~LyeStGlyg~s~V~~iDl~-Tgkv~~~~~l~~--~~FgeGit~~------g-~~LY~lt-w~~~~v~V~ 175 (346)
+.|++.- .++-|+..| +.|.++... .+.+.....+.. .+-|+.+++. + ..+..++ -..+.++.+
T Consensus 434 ~~Lavg~k~DrSfVvRg----~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~m 509 (794)
T PF08553_consen 434 SSLAVGYKNDRSFVVRG----SKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYKM 509 (794)
T ss_pred ceeEeeeccCceEEECC----CcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEEE
Confidence 4566652 456777765 478888766 444333322211 1123434442 1 2344444 467999999
Q ss_pred ECCCCcEEEEEecCCCce--eEEeeCCC-------EEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--
Q 019103 176 DQNNLNKLEEFTHQMKDG--WGLATDGK-------VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-- 244 (346)
Q Consensus 176 D~~tl~~i~ti~~~~peG--wGLt~Dg~-------~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-- 244 (346)
|.++++++.+..+. ..+ ..++|+.| .-|+.=..|.|+.|||.--. .+ .|...++....-|.+.+.
T Consensus 510 DLe~GKVV~eW~~~-~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k-~v~~~~k~Y~~~~~Fs~~aT 585 (794)
T PF08553_consen 510 DLERGKVVEEWKVH-DDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NK-LVDSQSKQYSSKNNFSCFAT 585 (794)
T ss_pred ecCCCcEEEEeecC-CCcceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cc-eeeccccccccCCCceEEEe
Confidence 99999999999885 233 34666543 33443347899999997432 11 122222221222223222
Q ss_pred --CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCC-CceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 245 --KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNG-IDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 245 --~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~-~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+|+|-|..- ...|-..|. .|+- +.- ..|. ++-.-||-.+.||+-+..|.|..=-|+...+.
T Consensus 586 t~~G~iavgs~-~G~IRLyd~-~g~~-AKT------------~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~~~ 649 (794)
T PF08553_consen 586 TEDGYIAVGSN-KGDIRLYDR-LGKR-AKT------------ALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTLIK 649 (794)
T ss_pred cCCceEEEEeC-CCcEEeecc-cchh-hhh------------cCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEeee
Confidence 577776653 566666662 2321 111 1222 55678999999999999998876544444443
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14339 DUF4394: Domain of unknown function (DUF4394) | Back alignment and domain information |
|---|
Probab=87.48 E-value=28 Score=33.40 Aligned_cols=160 Identities=14% Similarity=0.173 Sum_probs=91.7
Q ss_pred eeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEE--e----ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 108 QGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAI--N----QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 108 qGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~--~----~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
.||.|-| +|+||-= + ..++|..+|+.||..... - .+....||.-+-+.-+||.+..- .+.=+.++++|+
T Consensus 30 ~GID~Rpa~G~LYgl-~--~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~-~GqNlR~npdtG 105 (236)
T PF14339_consen 30 VGIDFRPANGQLYGL-G--STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN-TGQNLRLNPDTG 105 (236)
T ss_pred EEEEeecCCCCEEEE-e--CCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-CCcEEEECCCCC
Confidence 6999986 5689844 2 456999999999986444 2 34455677666666699998854 577788899988
Q ss_pred cEEE---EEecC---CCcee-----EEee--C------CCEEEEEC-CCCeEEEEe-CCCCcEEEEEEeccCCeeeeece
Q 019103 181 NKLE---EFTHQ---MKDGW-----GLAT--D------GKVLFGSD-GSSMLYQID-PQTLKVIRKDIVRYKGREVRNLN 239 (346)
Q Consensus 181 ~~i~---ti~~~---~peGw-----GLt~--D------g~~LyvSd-Gs~~l~vID-p~T~kvi~~I~V~~~G~pv~~lN 239 (346)
.+.. .+.+. +.+|. +.++ . ...||.=| ..+.|+... |.++++. .|+.-|..+...+
T Consensus 106 av~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ppN~GtL~---~vG~LGvd~~~~~ 182 (236)
T PF14339_consen 106 AVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNPPNDGTLN---TVGPLGVDAAGDA 182 (236)
T ss_pred CceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecCCCCCcEE---eeeccccccCccc
Confidence 8431 23331 11121 1111 1 23566655 355555553 3444332 2222222222223
Q ss_pred eeEeeC-----CEEEEEec-CCCeEEEEeCCCCeEEEEEEC
Q 019103 240 ELEFIK-----GEVWANVW-QTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 240 ELE~~~-----G~LyaNv~-~sn~I~vID~~TG~Vv~~I~l 274 (346)
.++..+ ...|+..- ....++.||..||+....-.+
T Consensus 183 gFDI~~~~~~~~~a~a~~~~~~~~LY~vdL~TG~at~~g~i 223 (236)
T PF14339_consen 183 GFDIAGDGNGGNAAYAVLGVGGSGLYTVDLTTGAATLVGQI 223 (236)
T ss_pred ceeeecCCCcceEEEEEecCCCcEEEEEECCCcccEEeeec
Confidence 344442 24665542 237899999999997544433
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.43 E-value=3.6 Score=43.97 Aligned_cols=70 Identities=11% Similarity=0.080 Sum_probs=48.2
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC--CeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~--~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
+..+.+-|.++.+|.||++|. ..+.+||..+||..+....+- .... =+.-.+++||+.||+ =++++++..
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~----dGL~~fd~~~gkalql~s~~~dk~I~a-l~~d~qg~LWVGTdq--Gv~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTP----DGLSYFDAGRGKALQLASPPLDKAINA-LIADVQGRLWVGTDQ--GVYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCcEEEecC----CcceEEccccceEEEcCCCcchhhHHH-HHHHhcCcEEEEecc--ceEEEchhh
Confidence 345668999998899999987 379999999999877654332 1111 011135789999876 356666655
|
|
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.8 Score=35.06 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=31.9
Q ss_pred EEEEEECCCCcEEEE-EecCCCceeEEeeCCCEEEEEC-CCCeEEEEeCC
Q 019103 171 TGFIYDQNNLNKLEE-FTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ 218 (346)
Q Consensus 171 ~v~V~D~~tl~~i~t-i~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~ 218 (346)
.|.-||.++.+.+.+ +. .|.|.++++|++.|||++ ....|++..-+
T Consensus 37 ~Vvyyd~~~~~~va~g~~--~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 37 NVVYYDGKEVKVVASGFS--FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eEEEEeCCEeEEeeccCC--CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 344467655443332 22 479999999999999999 47888887643
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.37 E-value=14 Score=40.90 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=84.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
-+|.|+.||..+.|.|.. .-+.+|.++|++ .+-+ .++... +++... .+.+|.+--.+|.+.++...+++...+
T Consensus 255 ~~L~fS~~G~~LlSGG~E--~VLv~Wq~~T~~-kqfLPRLgs~I--~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~t 329 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGRE--GVLVLWQLETGK-KQFLPRLGSPI--LHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKST 329 (792)
T ss_pred ceeEEecCCceEeecccc--eEEEEEeecCCC-cccccccCCee--EEEEEcCCCCeEEEEecCceEEEEeccchhhhhh
Confidence 599999999877788854 489999999998 2222 355544 334443 456888888899999999999998888
Q ss_pred EecC-------------CCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEecc
Q 019103 186 FTHQ-------------MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 186 i~~~-------------~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~ 230 (346)
|..- .+-|..++|--+.+.. || ...|.+.|+-|-+.+.++.|.+
T Consensus 330 Isgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl-n~~~g~vQ~ydl~td~~i~~~~v~~ 387 (792)
T KOG1963|consen 330 ISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL-NGHPGHVQFYDLYTDSTIYKLQVCD 387 (792)
T ss_pred ccCccCCCccccccccccceeEEEcCCCCceee-cCCCceEEEEeccccceeeeEEEEe
Confidence 7632 1123344553344444 65 7899999999999888888865
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=87.30 E-value=18 Score=37.17 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=36.7
Q ss_pred eeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019103 240 ELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 240 ELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
+|.+. ++...+.--.+|.+...|..+|.+++..+= .....+|+||||.++
T Consensus 128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d-------------h~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD-------------HEHYVQGVAWDPLNQ 178 (434)
T ss_pred hhhccCCCceeeeeeccceEEEEEeccceeEeeccc-------------cccccceeecchhhh
Confidence 35555 444445555699999999999999888743 134679999999876
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.85 E-value=7.6 Score=43.59 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=84.1
Q ss_pred EEEEE-ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE-EeeCCEE
Q 019103 95 VVNEF-PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV-TWLQKTG 172 (346)
Q Consensus 95 Vv~t~-phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l-tw~~~~v 172 (346)
.++++ .||..- +|+.|+|.+-||+|.| ++=.|.+|+.++.+.+.++. +.-.|-.-+..+...=|++ .-.++++
T Consensus 43 li~rFdeHdGpV--Rgv~FH~~qplFVSGG--DDykIkVWnYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTI 117 (1202)
T KOG0292|consen 43 LIDRFDEHDGPV--RGVDFHPTQPLFVSGG--DDYKIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTI 117 (1202)
T ss_pred HHhhhhccCCcc--ceeeecCCCCeEEecC--CccEEEEEecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeE
Confidence 34555 477555 8999999888999999 77799999999998766652 2222344455555555655 3456778
Q ss_pred EEEECCCCcEEEEEecCCCceeEEee---CCCEEEEECC-CCeEEEEeCCCCc
Q 019103 173 FIYDQNNLNKLEEFTHQMKDGWGLAT---DGKVLFGSDG-SSMLYQIDPQTLK 221 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~peGwGLt~---Dg~~LyvSdG-s~~l~vIDp~T~k 221 (346)
-|.+-++++.++...- -..+.++. ..+-|+||-. +.+|.|+|-.-++
T Consensus 118 rIWNwqsr~~iavltG--HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 118 RIWNWQSRKCIAVLTG--HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred EEEeccCCceEEEEec--CceEEEeeccCCccceEEEecccceEEEEeecchh
Confidence 8888888888887763 25566664 3467788764 8899999975544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.70 E-value=21 Score=35.75 Aligned_cols=101 Identities=17% Similarity=0.122 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEE--EEec-cCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC----
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVE--AINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---- 189 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~--~~~~-l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---- 189 (346)
.+++--|. .-.+|++.|+..-+.- ..++ -+...=-.+++..|..|-.+.-+.--+-+||+.+++++.++.-|
T Consensus 149 ~~LafPg~-k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A 227 (346)
T KOG2111|consen 149 SLLAFPGF-KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRA 227 (346)
T ss_pred eEEEcCCC-ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchh
Confidence 34444443 3468999998876552 1121 12233345566677777777777777889999999999999744
Q ss_pred CCceeEEeeCCCEEEEECCCCeEEEEeCC
Q 019103 190 MKDGWGLATDGKVLFGSDGSSMLYQIDPQ 218 (346)
Q Consensus 190 ~peGwGLt~Dg~~LyvSdGs~~l~vIDp~ 218 (346)
.-+-.+++||..+|-+|-.-.+||++-..
T Consensus 228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred eEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 12556789999999997767788888644
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.44 E-value=13 Score=41.08 Aligned_cols=196 Identities=13% Similarity=0.162 Sum_probs=110.6
Q ss_pred CCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE------eCCEEEEEEeeCCEEEEE
Q 019103 102 DPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL------LGEKLFQVTWLQKTGFIY 175 (346)
Q Consensus 102 d~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~------~g~~LY~ltw~~~~v~V~ 175 (346)
|++.-.+.|.++|||+-+-| |..+ ..|+++|+..-+..-.+.-.+ .|-+.+ .+++|....-++.-+.||
T Consensus 457 d~r~G~R~~~vSp~gqhLAs-GDr~-GnlrVy~Lq~l~~~~~~eAHe---sEilcLeyS~p~~~~kLLASasrdRlIHV~ 531 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLAS-GDRG-GNLRVYDLQELEYTCFMEAHE---SEILCLEYSFPVLTNKLLASASRDRLIHVY 531 (1080)
T ss_pred CcccceEEEEECCCcceecc-cCcc-CceEEEEehhhhhhhheeccc---ceeEEEeecCchhhhHhhhhccCCceEEEE
Confidence 34444488899998876555 4333 489999998755433332211 121222 123455555555666666
Q ss_pred ECC-CCcEEEEE----------ecC-----------------------------------------CCceeEEeeCCCEE
Q 019103 176 DQN-NLNKLEEF----------THQ-----------------------------------------MKDGWGLATDGKVL 203 (346)
Q Consensus 176 D~~-tl~~i~ti----------~~~-----------------------------------------~peGwGLt~Dg~~L 203 (346)
|.+ ...++.++ +.. .-+-+.+.|.-+.+
T Consensus 532 Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 532 DVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred ecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence 643 11111111 100 00112233333444
Q ss_pred EEECCCCeEEEEeCCCCcEEEEEEecc--CCeeeeeceeeEeeCCEEEE-EecCCCeEEEEeCCCCeEEEEEECCchhhh
Q 019103 204 FGSDGSSMLYQIDPQTLKVIRKDIVRY--KGREVRNLNELEFIKGEVWA-NVWQTDCIARISHEDGVVLGWVLLPNLRER 280 (346)
Q Consensus 204 yvSdGs~~l~vIDp~T~kvi~~I~V~~--~G~pv~~lNELE~~~G~Lya-Nv~~sn~I~vID~~TG~Vv~~I~l~~l~~~ 280 (346)
.+.-.+..|.++|.+++|.++..+=.. +|.++. +-.+..-+|+ +.....++.++|--+|+++++.-=
T Consensus 612 ~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK----v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~G------ 681 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK----VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTG------ 681 (1080)
T ss_pred EEEecccceEEEeccccceeeeecccccCCCceEE----EEECCCccEEEEeecCCceEEEEeccchhhhhhcC------
Confidence 444457889999999999998887632 466665 3344445664 444566799999999999887611
Q ss_pred hhhccCCCCceeeEEEEeCCCCEEE-EecCCCCcEEEEEE
Q 019103 281 LVAAGYNGIDVLNGIAWDSNRNRIF-VTGKLWPKLYEINL 319 (346)
Q Consensus 281 ~~~~~~~~~~vlNGIA~d~~~~~Lf-VTGK~Wp~l~ev~l 319 (346)
+ ....-|+-|.+|=+.|. |+|..==+++++-+
T Consensus 682 ---H----sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 682 ---H----SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ---c----chheeeeeecccchhheeecCCceEEEEECch
Confidence 0 12346888888877655 66555445555433
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.41 E-value=45 Score=34.73 Aligned_cols=177 Identities=13% Similarity=0.071 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeC--CEEEEEEeeCCEEEEEECCCC---cEEEEEecCC
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNL---NKLEEFTHQM 190 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl---~~i~ti~~~~ 190 (346)
.++.|++ -+.+|..||+++|+-...++. ++.. ..+..++ ..+...--.+++|.++|-... ...-+|.-+
T Consensus 257 nVLaSgs--aD~TV~lWD~~~g~p~~s~~~~~k~V--q~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~- 331 (463)
T KOG0270|consen 257 NVLASGS--ADKTVKLWDVDTGKPKSSITHHGKKV--QTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE- 331 (463)
T ss_pred eeEEecC--CCceEEEEEcCCCCcceehhhcCCce--eEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc-
Confidence 4777877 678999999999998777763 3322 3344443 334444566788999997632 111122211
Q ss_pred CceeEEeeCCC-EEEEECCCCeEEEEeCCCC-cEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeE
Q 019103 191 KDGWGLATDGK-VLFGSDGSSMLYQIDPQTL-KVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVV 268 (346)
Q Consensus 191 peGwGLt~Dg~-~LyvSdGs~~l~vIDp~T~-kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~V 268 (346)
-|=....+-.. ..+++-.+.+|+-+|.+.. +.+-++...++ ++. -|=+|...-+.++- ..+-++
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~IS----------gl~~n~~~p~~l~t--~s~d~~ 397 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EIS----------GLSVNIQTPGLLST--ASTDKV 397 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC--Ccc----------eEEecCCCCcceee--ccccce
Confidence 12222333333 4455555789999998775 56666666543 332 22333333333322 233445
Q ss_pred EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 269 LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 269 v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
+.-++++.-.+.......-....+...|.+|+...+|+.|+--+
T Consensus 398 Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~ 441 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA 441 (463)
T ss_pred EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccc
Confidence 55555533222211100011335888999999999999998877
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=86.33 E-value=66 Score=36.58 Aligned_cols=173 Identities=15% Similarity=0.220 Sum_probs=102.8
Q ss_pred EEEEEEe--CCEEEEEEeeCCEEEEE------ECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEE
Q 019103 152 GEGLTLL--GEKLFQVTWLQKTGFIY------DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (346)
Q Consensus 152 geGit~~--g~~LY~ltw~~~~v~V~------D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi 223 (346)
-.++... .+.|+++. .++.++++ +....+.++.++.|. ....-+||++.|.+..|.++|.+++ .+|+++
T Consensus 78 ivs~~yl~d~~~l~~~~-~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI-~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i 154 (928)
T PF04762_consen 78 IVSFQYLADSESLCIAL-ASGDIILVREDPDPDEDEIEIVGSVDSGI-LAASWSPDEELLALVTGEGNLLLMT-RDFDPI 154 (928)
T ss_pred EEEEEeccCCCcEEEEE-CCceEEEEEccCCCCCceeEEEEEEcCcE-EEEEECCCcCEEEEEeCCCEEEEEe-ccceEE
Confidence 3445543 34555554 45777777 455678899999873 6667899999999999999999985 678877
Q ss_pred EEEEecc-------------C----------Ceeee------ec-----eeeEeeCCEEEEEecCCC----eEEEEeCCC
Q 019103 224 RKDIVRY-------------K----------GREVR------NL-----NELEFIKGEVWANVWQTD----CIARISHED 265 (346)
Q Consensus 224 ~~I~V~~-------------~----------G~pv~------~l-----NELE~~~G~LyaNv~~sn----~I~vID~~T 265 (346)
..+++.. + |+... .+ ..+..+++.+.+. |..| -|+-+++.+
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~IS-WRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRIS-WRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEE-ECCCCcEEEEEEEEcCC
Confidence 6665532 1 11100 00 0122222333322 3322 145667777
Q ss_pred C--eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeeccccccCCCch
Q 019103 266 G--VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKDGFNV 332 (346)
Q Consensus 266 G--~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~~~~~~~~ 332 (346)
| +++..++=. +.+....-+...--..+||.|.|+.+-.+.+ -+.-..|.+-+.|.-+-..|++
T Consensus 234 ~~~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfErNGLrhgeF~l 298 (928)
T PF04762_consen 234 GSRRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFERNGLRHGEFTL 298 (928)
T ss_pred CceeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEecCCcEeeeEec
Confidence 7 666666431 1222111122223456899999998888876 3444888887777666666655
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=86.32 E-value=29 Score=39.23 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=97.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCC---CcEE---------EEe----ccCCCeeEE--EEEEe-CCEEEEEEee
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALET---GKVE---------AIN----QMEGSYFGE--GLTLL-GEKLFQVTWL 168 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~T---gkv~---------~~~----~l~~~~Fge--Git~~-g~~LY~ltw~ 168 (346)
--+-|++||..+-+.+ ++.-|.+|+.+. +.+- .+. .+-.+. ++ -+... ++.+.++--.
T Consensus 73 ~CVR~S~dG~~lAsGS--DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 73 NCVRFSPDGSYLASGS--DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVSL 149 (942)
T ss_pred eEEEECCCCCeEeecc--CcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-CccceeccCCCccEEEEecc
Confidence 4667899998776766 566778888773 1100 000 000000 01 01111 3567777888
Q ss_pred CCEEEEEECCCCcEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC---CeeeeeceeeEe
Q 019103 169 QKTGFIYDQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK---GREVRNLNELEF 243 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~---G~pv~~lNELE~ 243 (346)
++.|.++|..||+.++++.- + ..-|..++|-|+++-.--++.+|-|+++.++.+.++|.=.-+ +.++ .--|.|
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~--f~RlSW 227 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF--FLRLSW 227 (942)
T ss_pred cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce--eeeccc
Confidence 99999999999999999874 2 346666667788665534577999999999999888865321 1121 112333
Q ss_pred e-CCE-EEE---EecCCCeEEEEeCCCCeEE
Q 019103 244 I-KGE-VWA---NVWQTDCIARISHEDGVVL 269 (346)
Q Consensus 244 ~-~G~-Lya---Nv~~sn~I~vID~~TG~Vv 269 (346)
- ||. |-+ -+....++.+|+-.+-++-
T Consensus 228 SPDG~~las~nA~n~~~~~~~IieR~tWk~~ 258 (942)
T KOG0973|consen 228 SPDGHHLASPNAVNGGKSTIAIIERGTWKVD 258 (942)
T ss_pred CCCcCeecchhhccCCcceeEEEecCCceee
Confidence 3 564 432 2234678999999888854
|
|
| >PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller | Back alignment and domain information |
|---|
Probab=86.08 E-value=0.69 Score=31.62 Aligned_cols=25 Identities=52% Similarity=0.465 Sum_probs=20.4
Q ss_pred CceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 289 IDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 289 ~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
.+.++|||+|++++ +||||--+..-
T Consensus 12 ~~~~~~IavD~~GN-iYv~G~T~~~~ 36 (38)
T PF06739_consen 12 QDYGNGIAVDSNGN-IYVTGYTNGND 36 (38)
T ss_pred ceeEEEEEECCCCC-EEEEEeecCCC
Confidence 35799999999887 99999776543
|
SBBP stands for Seven Bladed Beta Propeller. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.72 E-value=26 Score=36.24 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=54.3
Q ss_pred CCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECC
Q 019103 102 DPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 102 d~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~ 178 (346)
....|..+|+|+|..+ |.+...+ ...|.++|+.|..+......+..++---..++. +.||... .++.|+|||..
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl--~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl-~nG~VlvyD~R 266 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASL--GNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL-QNGMVLVYDMR 266 (463)
T ss_pred ccchhhhhhccCccccceeeeecc--CceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec-cCceEEEEEcc
Confidence 3567889999998765 5555443 259999999999999999888777654444444 4566554 57899999964
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=85.42 E-value=32 Score=35.53 Aligned_cols=217 Identities=14% Similarity=0.099 Sum_probs=128.0
Q ss_pred eeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEE--------eccCCCee-EEEEEEeC-
Q 019103 90 IYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAI--------NQMEGSYF-GEGLTLLG- 159 (346)
Q Consensus 90 ~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~--------~~l~~~~F-geGit~~g- 159 (346)
-..+++..+|.|+...+ =+-+-|.+...++++.. ...|.+||..+-.-... +.|-..-- |.|+....
T Consensus 112 ~~~v~i~~~i~h~gEVn--RaRymPQnp~iVAt~t~-~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~ 188 (422)
T KOG0264|consen 112 SGKVEISQKINHDGEVN--RARYMPQNPNIVATKTS-SGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ 188 (422)
T ss_pred ccceEEEEeccCCccch--hhhhCCCCCcEEEecCC-CCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc
Confidence 34689999999987764 33444656666666643 46899999765321111 11111000 33333321
Q ss_pred CEEEEE-EeeCCEEEEEECCCCcEE-------EEEec-C-CCceeEEeeCCCEEEEECC-CCeEEEEeCCC--CcEEEEE
Q 019103 160 EKLFQV-TWLQKTGFIYDQNNLNKL-------EEFTH-Q-MKDGWGLATDGKVLFGSDG-SSMLYQIDPQT--LKVIRKD 226 (346)
Q Consensus 160 ~~LY~l-tw~~~~v~V~D~~tl~~i-------~ti~~-~-~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T--~kvi~~I 226 (346)
...+.+ .-.++.+.+.|.+..... .-|.. + .-+-..+.+-.+.||.|=| +..|.+.|+.+ .+..+.+
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 233333 456788888887644331 11211 1 1233344555677888765 77999999995 3433333
Q ss_pred EeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019103 227 IVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 227 ~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
.. ++.++.-+ +..+.++.|.|+--.+++|..-|+.+.+- .-..+.+ . .+-...+-|+|....++.
T Consensus 269 ~a--h~~~vn~~-~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~----------H-~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 269 KA--HSAEVNCV-AFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEG----------H-EDEVFQVEWSPHNETVLA 333 (422)
T ss_pred cc--cCCceeEE-EeCCCCCceEEeccCCCcEEEeechhccc-CceeccC----------C-CcceEEEEeCCCCCceeE
Confidence 33 23343211 23344789999998889999999998764 1111111 1 223456999999999999
Q ss_pred ecCCCCcEEEEEEeeccc
Q 019103 307 TGKLWPKLYEINLREMKR 324 (346)
Q Consensus 307 TGK~Wp~l~ev~l~~~~~ 324 (346)
+..-|..+--=+|..+..
T Consensus 334 SSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred ecccCCcEEEEecccccc
Confidence 998999888777765443
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=85.20 E-value=2.7 Score=26.56 Aligned_cols=24 Identities=4% Similarity=0.138 Sum_probs=20.3
Q ss_pred EEEEEE-eCCEEEEEEeeCCEEEEE
Q 019103 152 GEGLTL-LGEKLFQVTWLQKTGFIY 175 (346)
Q Consensus 152 geGit~-~g~~LY~ltw~~~~v~V~ 175 (346)
+.|+++ .++.||+++..+++|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 567777 568999999999999886
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=84.92 E-value=20 Score=39.97 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=81.0
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-------CCEEEEEEeeCCEEEEEECCCC--c
Q 019103 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-------GEKLFQVTWLQKTGFIYDQNNL--N 181 (346)
Q Consensus 111 ~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-------g~~LY~ltw~~~~v~V~D~~tl--~ 181 (346)
....+..++.-++. ..+.|+..|+.+|||+....+....=-..+++. +..-|+. ...+.+|.+|+.-- +
T Consensus 488 L~~~d~~mil~~~~-~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflG-ls~n~lfriDpR~~~~k 565 (794)
T PF08553_consen 488 LHDQDRNMILLDPN-NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLG-LSDNSLFRIDPRLSGNK 565 (794)
T ss_pred hhccccceEeecCC-CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEE-ECCCceEEeccCCCCCc
Confidence 33344456666553 568999999999999999987653211223332 2233333 23688999998732 2
Q ss_pred EEE----EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecCC
Q 019103 182 KLE----EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQT 255 (346)
Q Consensus 182 ~i~----ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~s 255 (346)
++. .+.....--.+-|...+++.|....+.|..+|. .++. ++.....-|.|+.. +... || .|.|++ .
T Consensus 566 ~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~-AKT~lp~lG~pI~~---iDvt~DGkwilaTc--~ 638 (794)
T PF08553_consen 566 LVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKR-AKTALPGLGDPIIG---IDVTADGKWILATC--K 638 (794)
T ss_pred eeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchh-hhhcCCCCCCCeeE---EEecCCCcEEEEee--c
Confidence 221 222111111122333445555555667777784 3322 33334333667764 3322 55 688998 7
Q ss_pred CeEEEEeCC
Q 019103 256 DCIARISHE 264 (346)
Q Consensus 256 n~I~vID~~ 264 (346)
..+..||+.
T Consensus 639 tyLlLi~t~ 647 (794)
T PF08553_consen 639 TYLLLIDTL 647 (794)
T ss_pred ceEEEEEEe
Confidence 889999974
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.91 E-value=42 Score=33.10 Aligned_cols=178 Identities=11% Similarity=0.107 Sum_probs=104.4
Q ss_pred eEEEecC-CEEEEEcCCCCCCeEEEEECCCCc-EEEEeccCC----CeeEEEEEEeCCEEEEEEeeCCEEEEEECC--CC
Q 019103 109 GLLYAEN-DTLFESTGLYGRSSVRRVALETGK-VEAINQMEG----SYFGEGLTLLGEKLFQVTWLQKTGFIYDQN--NL 180 (346)
Q Consensus 109 GL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l~~----~~FgeGit~~g~~LY~ltw~~~~v~V~D~~--tl 180 (346)
.+++.|. |.++-|+| ++..|+++++..+. ..-+..++. ..--..-.+.|+ +..+.-.+.++.++-.. ++
T Consensus 19 ~~awhp~~g~ilAscg--~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 19 SVAWHPGKGVILASCG--TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred EEEeccCCceEEEeec--CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCce
Confidence 8888886 77888888 78899999998533 333323321 111222233444 44444556666666544 67
Q ss_pred cEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc-CCeeeeeceeeEeeCC-EEEEEecCCC
Q 019103 181 NKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKG-EVWANVWQTD 256 (346)
Q Consensus 181 ~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~-~G~pv~~lNELE~~~G-~LyaNv~~sn 256 (346)
+.+++++- + ---..+.+.+|..|-+.-.+..|.+....-.....-+.|-. +-+.+.+ .-+..- .|.+..-++|
T Consensus 96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~---V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH---VIWHPTEDLLFSCSYDN 172 (312)
T ss_pred eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE---EEEcCCcceeEEeccCC
Confidence 88888863 2 11355677888888887777777777655434433444422 1111111 112221 5777777899
Q ss_pred eEEEEeCC---CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019103 257 CIARISHE---DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 257 ~I~vID~~---TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
+|-+.+-. +-+.+.+|+-. .+..=++||++.|.||-
T Consensus 173 TIk~~~~~~dddW~c~~tl~g~-------------~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 173 TIKVYRDEDDDDWECVQTLDGH-------------ENTVWSLAFDNIGSRLV 211 (312)
T ss_pred eEEEEeecCCCCeeEEEEecCc-------------cceEEEEEecCCCceEE
Confidence 88777655 34566666331 12455788888886643
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.58 E-value=42 Score=32.82 Aligned_cols=117 Identities=14% Similarity=0.214 Sum_probs=76.3
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
..+.++|.. .++.. | |++.++.+|+++|++.+...=...| -+-+... +..++- --.++++-+.|.+|.+.+.
T Consensus 118 Nam~ldP~enSi~~A-g--GD~~~y~~dlE~G~i~r~~rGHtDY-vH~vv~R~~~~qils-G~EDGtvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 118 NAMWLDPSENSILFA-G--GDGVIYQVDLEDGRIQREYRGHTDY-VHSVVGRNANGQILS-GAEDGTVRVWDTKTQKHVS 192 (325)
T ss_pred ceeEeccCCCcEEEe-c--CCeEEEEEEecCCEEEEEEcCCcce-eeeeeecccCcceee-cCCCccEEEEeccccceeE
Confidence 456666544 45544 4 6789999999999988877544333 2333332 234433 3467999999999999999
Q ss_pred EEecC-----CCceeE-----EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc
Q 019103 185 EFTHQ-----MKDGWG-----LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 185 ti~~~-----~peGwG-----Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
.|... ..-.|| |+-|.+||.- -|...+..+.....+-+..+++..
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~edWlvC-GgGp~lslwhLrsse~t~vfpipa 247 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVNEDWLVC-GGGPKLSLWHLRSSESTCVFPIPA 247 (325)
T ss_pred EeccccChhhcCcccCceeEEEeccCceEEe-cCCCceeEEeccCCCceEEEeccc
Confidence 98642 111122 4555555543 346678888888888877777754
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.34 E-value=31 Score=31.08 Aligned_cols=161 Identities=15% Similarity=0.140 Sum_probs=99.1
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEE-eeCCEEEEEECCCCcE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVT-WLQKTGFIYDQNNLNK 182 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~lt-w~~~~v~V~D~~tl~~ 182 (346)
.....+.+++++..+.+.+. .+..+..||..+++.+..... ............+. .+.++ ..++.+.++|..+.+.
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~~~ 233 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSS-LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTGKL 233 (466)
T ss_pred ccEEEEEECCCCCEEEecCC-CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCCcE
Confidence 33468999998875555552 367999999999877777765 23333333332333 44444 6778888889887888
Q ss_pred EE-EEecCCCce-e-EEeeCCCEEEEECCCCeEEEEeCCCCcE-EEEEEeccCCeeeeeceeeEeeC-CEEEEEecCCCe
Q 019103 183 LE-EFTHQMKDG-W-GLATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFIK-GEVWANVWQTDC 257 (346)
Q Consensus 183 i~-ti~~~~peG-w-GLt~Dg~~LyvSdGs~~l~vIDp~T~kv-i~~I~V~~~G~pv~~lNELE~~~-G~LyaNv~~sn~ 257 (346)
+. .+... ... . .+++++..+..+..+..+.++|...... .... ..+..+ ++.+++.. +..++.....+.
T Consensus 234 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~---v~~~~~~~~~~~~~~~~~d~~ 307 (466)
T COG2319 234 LRSTLSGH-SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSS---VLSVAFSPDGKLLASGSSDGT 307 (466)
T ss_pred EeeecCCC-CcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCcc---EEEEEECCCCCEEEEeeCCCc
Confidence 77 45432 222 3 4788886666555688999999887665 3333 112223 33444543 444433444455
Q ss_pred EEEEeCCCCeEEEEEE
Q 019103 258 IARISHEDGVVLGWVL 273 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~ 273 (346)
+..-|..++.......
T Consensus 308 ~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 308 VRLWDLETGKLLSSLT 323 (466)
T ss_pred EEEEEcCCCceEEEee
Confidence 5666888888777765
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.32 E-value=23 Score=38.94 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=29.5
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEecc
Q 019103 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQM 146 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l 146 (346)
.-++|.||| +|.+.+| +++.+||+..|...+.++-
T Consensus 16 ~d~afkPDGsqL~lAAg----~rlliyD~ndG~llqtLKg 51 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAAG----SRLLVYDTSDGTLLQPLKG 51 (1081)
T ss_pred heeEECCCCceEEEecC----CEEEEEeCCCccccccccc
Confidence 578899999 6999988 5999999999988777654
|
|
| >PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A | Back alignment and domain information |
|---|
Probab=84.05 E-value=3.5 Score=34.17 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=48.7
Q ss_pred eEEEEEEec-CCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEE
Q 019103 93 IQVVNEFPH-DPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQ 164 (346)
Q Consensus 93 ~~Vv~t~ph-d~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ 164 (346)
|-+-+.=|| ...+-.+|+.-+.+|..++.+.+++ ..||++||+.+..-...-..|. +-+.++.+|+
T Consensus 37 yAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~----~~f~L~tG~~~~~~~~~l~~yp--vrv~~g~V~V 103 (104)
T PF13806_consen 37 YAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHK----WRFDLRTGECLEDPDVSLRTYP--VRVEDGQVYV 103 (104)
T ss_dssp EEEESBETTTTSSCGCGSEEEECTTEEEEEETTTT----EEEETTTTEESSECSEBSBEEE--EEECTTEEEE
T ss_pred EEEeccCCccCCcccceeEEccCCCCEEEECCCCC----CeEECCCcCcCCCCCCcEEeEE--EEEECCEEEE
Confidence 344455589 6888889999988889999999988 6799999987665444445555 3445677765
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=83.80 E-value=4.8 Score=25.98 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=28.8
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVA 134 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iD 134 (346)
+.+.++.. .......+.+++++.++.+++ .+..|++||
T Consensus 2 ~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~--~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG-HSSSINSIAWSPDGNFLASGS--SDGTIRVWD 39 (39)
T ss_dssp EEEEEEES-SSSSEEEEEEETTSSEEEEEE--TTSEEEEEE
T ss_pred eEEEEEcC-CCCcEEEEEEecccccceeeC--CCCEEEEEC
Confidence 45667764 344458999999998888888 567999987
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.67 E-value=34 Score=35.48 Aligned_cols=82 Identities=12% Similarity=0.011 Sum_probs=37.9
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCC-ceeEEeeCCCEEEEE
Q 019103 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFGS 206 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~p-eGwGLt~Dg~~LyvS 206 (346)
++|.++.--+++....++++- ..++|-. |..|.+.. ++.+..||.++.++++++++. + -..-.++||+.+-+.
T Consensus 89 ~~I~I~kn~~~~~~k~i~~~~--~~~~If~-G~LL~~~~--~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 89 STIKIYKNFKNEVVKSIKLPF--SVEKIFG-GNLLGVKS--SDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALV 162 (443)
T ss_dssp S-EEEEETTEE-TT-----SS---EEEEE--SSSEEEEE--TTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE
T ss_pred CeEEEEEcCccccceEEcCCc--ccceEEc-CcEEEEEC--CCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEE
Confidence 456665222232223344432 2344444 44444443 457999999999999999985 3 444556777765443
Q ss_pred CCCCeEEEEe
Q 019103 207 DGSSMLYQID 216 (346)
Q Consensus 207 dGs~~l~vID 216 (346)
- .+.+++++
T Consensus 163 t-~~~i~il~ 171 (443)
T PF04053_consen 163 T-KDSIYILK 171 (443)
T ss_dssp --S-SEEEEE
T ss_pred e-CCeEEEEE
Confidence 2 34555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.19 E-value=1.8 Score=47.11 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=66.8
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEE-eeCCEEEEEECCCCcEEEE
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVT-WLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~lt-w~~~~v~V~D~~tl~~i~t 185 (346)
-|.|+|+|++.++.| ++..+.+||+..|++....+-.. |.+..+ ++..+.++. --+..+-++|.+|++.+.+
T Consensus 159 ~l~lsP~Gr~v~~g~--ed~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGG--EDNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred EEeecCCCceeeccC--Ccceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 357789999999988 57899999999999987766332 223333 334444444 4467788999999999998
Q ss_pred EecC--CCceeEEeeCCCEEEEEC
Q 019103 186 FTHQ--MKDGWGLATDGKVLFGSD 207 (346)
Q Consensus 186 i~~~--~peGwGLt~Dg~~LyvSd 207 (346)
...+ ...+..+.+|++.++--+
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred cCCccCCceeeeecCCceeeecCc
Confidence 7653 245555778888776644
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=83.01 E-value=6.6 Score=40.91 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=51.4
Q ss_pred eEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCC------CCEEEEec-----
Q 019103 241 LEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSN------RNRIFVTG----- 308 (346)
Q Consensus 241 LE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~------~~~LfVTG----- 308 (346)
|.+. ||++||+--....|.++++.++.......++.+.. . ....-|-|||++|+ .+.|||+-
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~---~---~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN---D---AQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec---c---CCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 6665 78999987556899999998887655554433321 0 12457899999976 35899982
Q ss_pred -C---CCCcEEEEEEee
Q 019103 309 -K---LWPKLYEINLRE 321 (346)
Q Consensus 309 -K---~Wp~l~ev~l~~ 321 (346)
+ ....|.+.++.+
T Consensus 109 ~~~~~~~~~I~R~~l~~ 125 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDK 125 (454)
T ss_pred CCCccCCcEEEEEEecC
Confidence 2 356788887754
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.93 E-value=3.5 Score=42.27 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.5
Q ss_pred eeeEEEEeCCCCEEEEecCC
Q 019103 291 VLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 291 vlNGIA~d~~~~~LfVTGK~ 310 (346)
.+.|+||+|.+++||+|-.-
T Consensus 240 N~qGl~w~P~tg~Lw~~e~g 259 (399)
T COG2133 240 NPQGLAWHPVTGALWTTEHG 259 (399)
T ss_pred CccceeecCCCCcEEEEecC
Confidence 56799999999999988433
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=82.89 E-value=50 Score=32.34 Aligned_cols=96 Identities=10% Similarity=0.012 Sum_probs=56.8
Q ss_pred eeEEEEEEecCCC-----------CcceeEEEecCCEEEEE----------------cCCCCCCeEEEEECCCCcEEEEe
Q 019103 92 TIQVVNEFPHDPR-----------AFTQGLLYAENDTLFES----------------TGLYGRSSVRRVALETGKVEAIN 144 (346)
Q Consensus 92 t~~Vv~t~phd~~-----------~FTqGL~~~~d~~LyeS----------------tGlyg~s~V~~iDl~Tgkv~~~~ 144 (346)
+|+++.++..... .-..-+.+.++|+++++ .|-.-++.+..+|++||+++.+.
T Consensus 33 ~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~TgevlfeW 112 (299)
T PF14269_consen 33 SYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFEW 112 (299)
T ss_pred CCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEEE
Confidence 5777777765331 11234566677765551 11123468899999999998887
Q ss_pred ccC----CCeeE----------------------EEEEEe-CCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019103 145 QME----GSYFG----------------------EGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 145 ~l~----~~~Fg----------------------eGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
..- ...+- -.+... .+.+.++.-.-+.|++||++|++++-++-
T Consensus 113 ~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lg 182 (299)
T PF14269_consen 113 SASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLG 182 (299)
T ss_pred EhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeC
Confidence 321 11100 011111 13455666667888899988888887763
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.19 E-value=38 Score=30.50 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=114.4
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc-EEEEecc-CC-CeeEEEE-EEeCCEEEEE-EeeCCEEEEEECCC
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQM-EG-SYFGEGL-TLLGEKLFQV-TWLQKTGFIYDQNN 179 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l-~~-~~FgeGi-t~~g~~LY~l-tw~~~~v~V~D~~t 179 (346)
....++.+.+++..+...+ .+..+..||...+. ....+.. .. .....-. ...+..+.+. ...++.+.++|..+
T Consensus 66 ~~i~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 66 DSITSIAFSPDGELLLSGS--SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred ceEEEEEECCCCcEEEEec--CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence 3346788887777666655 56699999999886 4444433 22 2222222 2233434444 44478999999988
Q ss_pred -CcEEEEEecCC--CceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCE-EEEEec
Q 019103 180 -LNKLEEFTHQM--KDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANVW 253 (346)
Q Consensus 180 -l~~i~ti~~~~--peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~-LyaNv~ 253 (346)
......+.... -....++++++.++.... +..+.++|..+.+.+..+.-.. .++.. +++. ++. +.+...
T Consensus 144 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~---~~~~~~~~~~~~~~~ 218 (466)
T COG2319 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT--DPVSS---LAFSPDGGLLIASGS 218 (466)
T ss_pred CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC--CceEE---EEEcCCcceEEEEec
Confidence 77777666431 134567888886666654 8899999998866666665522 22222 2333 444 444545
Q ss_pred CCCeEEEEeCCCCeEEEE-EECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 254 QTDCIARISHEDGVVLGW-VLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~-I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
.+..|.+-|..+++++.. +.- + ... +.+ .+.+++ .+++++..-..+....+.
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~---------~--~~~-~~~--~~~~~~-~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSG---------H--SDS-VVS--SFSPDG-SLLASGSSDGTIRLWDLR 271 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCC---------C--Ccc-eeE--eECCCC-CEEEEecCCCcEEEeeec
Confidence 566666668788887774 311 0 111 111 677777 444466666666555543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.03 E-value=32 Score=35.57 Aligned_cols=109 Identities=14% Similarity=0.068 Sum_probs=72.2
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCC------cEEEEe--ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETG------KVEAIN--QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg------kv~~~~--~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
..|.|+.++++++|.| ++-.+++|..+.- |-++.. +-..+.|.-.+..-+..||-. ...++|..-|..|
T Consensus 60 NAlqFS~N~~~L~SGG--DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG-~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 60 NALQFSHNDRFLASGG--DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG-ERWGTVIKHDIET 136 (609)
T ss_pred ceeeeccCCeEEeecC--CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC-CCcceeEeeeccc
Confidence 5789999899999988 6778899987642 222221 112457776555556667754 3346677778888
Q ss_pred CcEEEEEecC--C--CceeEEeeCCCEEEEECCCCeEEEEeCCC
Q 019103 180 LNKLEEFTHQ--M--KDGWGLATDGKVLFGSDGSSMLYQIDPQT 219 (346)
Q Consensus 180 l~~i~ti~~~--~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T 219 (346)
-+-+--+... . -+|+..+|-...+.++-.+..|.+||-..
T Consensus 137 ~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 137 KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 7777766653 1 24444566666777766688999999654
|
|
| >KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.87 E-value=15 Score=40.89 Aligned_cols=165 Identities=14% Similarity=0.065 Sum_probs=107.4
Q ss_pred ecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC--eeEEEEEEeCCEEEEEEeeCCEEEEEEC
Q 019103 100 PHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS--YFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 100 phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~--~FgeGit~~g~~LY~ltw~~~~v~V~D~ 177 (346)
+.+..|- .++++. .+.+|-++| | .|++|...|.....+...-.. ----=+...|..+|++--....+-.+++
T Consensus 623 ~~g~lPv-rsla~~-ed~~was~g--G--~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfht 696 (925)
T KOG3522|consen 623 PTGSLPV-RSLAFQ-EDFVWASEG--G--CVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHT 696 (925)
T ss_pred ccCCccc-cchhhh-hceeeeecC--C--ceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecc
Confidence 3444443 566664 467888877 5 999999888766555533211 1111133368899999777778888899
Q ss_pred CCCcEEEEEecCCCceeEEeeCCCEEEEECC---CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC
Q 019103 178 NNLNKLEEFTHQMKDGWGLATDGKVLFGSDG---SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254 (346)
Q Consensus 178 ~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdG---s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~ 254 (346)
+|+.-...+..- .-|--..|+++.+=++-. -+-|.|.++.|..+..-+++..+.+++++. + .-..-+|+.+-.
T Consensus 697 etl~hlqd~nia-T~vt~~lP~~kllsv~~rl~c~gl~~V~~~~~l~v~~~v~~~q~~k~~~~~--~-vS~~~~~~~vk~ 772 (925)
T KOG3522|consen 697 ETLWHLQDSNIA-TSVTVDLPFGKLLSVPGRLWCQGLLMVLTSLTLLVALPVPRLQDSKVTGRM--M-VSYHAVWSPVKF 772 (925)
T ss_pred cccCCccccccC-cceeecCCCcccccCCCcccccceeEEeccceeEEEeeeeeccCCceeeee--e-eecccccccchh
Confidence 999988888753 344456677766555322 789999999999999999998776766532 2 223345665555
Q ss_pred CCeEEEEeCCCCeEEEEEEC
Q 019103 255 TDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l 274 (346)
.-.+...-++|-......++
T Consensus 773 ~~~~~~~H~~~~~~~~e~~~ 792 (925)
T KOG3522|consen 773 SAHATALHEKTKDKSREVLA 792 (925)
T ss_pred hhhhhhhccchHhhhhhccC
Confidence 55555666666555555544
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.66 E-value=27 Score=35.85 Aligned_cols=191 Identities=9% Similarity=0.066 Sum_probs=98.4
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCc-EEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
-++|.+||.+.-+.| .+..+|+||..+.. ++....-..+. .-++...+--++++-......|.|.+++..+++-.
T Consensus 149 ~vaf~~~gs~latgg--~dg~lRv~~~Ps~~t~l~e~~~~~eV--~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGG--TDGTLRVWEWPSMLTILEEIAHHAEV--KDLDFSPDGKFLASIGADSARVWSVNTGAALARKT 224 (398)
T ss_pred EEEEcCCCCEeeecc--ccceEEEEecCcchhhhhhHhhcCcc--ccceeCCCCcEEEEecCCceEEEEeccCchhhhcC
Confidence 456777887777766 45599999954443 33333333322 22333222222333333489999999986666554
Q ss_pred -cCCCceeE---E--eeCCCEEEEEC---CCCeEEEEeCCCCcE----EEEEEeccCCeeeeeceeeEee-CCEEEEEec
Q 019103 188 -HQMKDGWG---L--ATDGKVLFGSD---GSSMLYQIDPQTLKV----IRKDIVRYKGREVRNLNELEFI-KGEVWANVW 253 (346)
Q Consensus 188 -~~~peGwG---L--t~Dg~~LyvSd---Gs~~l~vIDp~T~kv----i~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~ 253 (346)
.+.+|-.. + .+++..|+++. -...|...|...-+- ..+-.+... +- +.-|... +|+..|=--
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~-~s---iSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF-KS---ISSLAVSDDGKFLALGT 300 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc-Cc---ceeEEEcCCCcEEEEec
Confidence 22122222 1 22334555532 144444444322111 000000000 01 1123333 566555334
Q ss_pred CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE-EecCCCCcEEEEEE
Q 019103 254 QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF-VTGKLWPKLYEINL 319 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf-VTGK~Wp~l~ev~l 319 (346)
+++.|+++|..+.+.+..+.= . + ....-|++|.|+.+.+- |...+=-.+..|..
T Consensus 301 ~dGsVai~~~~~lq~~~~vk~-----a---H----~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQRLQYVKE-----A---H----LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcEEEEEeceeeeeEeehh-----h---h----eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 599999999999998877721 1 1 22667899999988666 34333345555555
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.50 E-value=30 Score=36.17 Aligned_cols=133 Identities=11% Similarity=0.053 Sum_probs=83.4
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEE--e-ccCC--CeeEEEEEEeCCEEEEEEeeCCEEEEEEC----
Q 019103 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAI--N-QMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQ---- 177 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~--~-~l~~--~~FgeGit~~g~~LY~ltw~~~~v~V~D~---- 177 (346)
.++++.|-. .++.++|+ +.++.+||+..-.-.+. + .++. ..-..=+++.++. .+.|-+++.+-|||.
T Consensus 326 ~sv~~NP~~p~~laT~s~--D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASL--DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred ceeecCCCCchheeeccc--CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeeccccc
Confidence 688888755 56777774 45999999986433332 1 1221 1112223466777 778899999999999
Q ss_pred CCCcEEEEEecCCCceeEE-------eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019103 178 NNLNKLEEFTHQMKDGWGL-------ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 178 ~tl~~i~ti~~~~peGwGL-------t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
+....+.+|.+....|-=| .||-..+++.+-...|-|||++.++.+..+--.. -..+.-+|++.+-
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~tI~~vn~~HP~ 475 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SSTIPSVNEFHPM 475 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-ccccccceeeccc
Confidence 6788888998742222222 3466777777878889999998888554321111 1233455665443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.17 E-value=60 Score=32.16 Aligned_cols=151 Identities=14% Similarity=0.061 Sum_probs=90.8
Q ss_pred CCcceeEEEecC------CEEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEEEeC------CEEEEE-EeeC
Q 019103 104 RAFTQGLLYAEN------DTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLLG------EKLFQV-TWLQ 169 (346)
Q Consensus 104 ~~FTqGL~~~~d------~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~FgeGit~~g------~~LY~l-tw~~ 169 (346)
..|.||+.|.|. +.|+.+ |..| ..-.|.+.|.++.-.+ .... -|+++.. -+++++ +-..
T Consensus 67 v~~y~g~~F~p~s~~~kc~~la~g-G~~g--~fd~~~~~tn~~h~~~cd~sn----n~v~~~~r~cd~~~~~~i~sndht 139 (344)
T KOG4532|consen 67 VEFYTGMTFTPGSFINKCVTLADG-GASG--QFDLFACNTNDGHLYQCDVSN----NDVTLVKRYCDLKFPLNIASNDHT 139 (344)
T ss_pred EEeeecccccchHhhccccEEEec-cccc--eeeeecccCcccceeeecccc----cchhhhhhhcccccceeeccCCcc
Confidence 457799988863 244443 3223 5666666666553333 2222 3345543 246665 4456
Q ss_pred CEEEEEECCCCcEEEEEe-cCCCceeEEeeCCCEEEEECCCCe--EEEEeCCCCcEEEEEEec---cCCeeeeeceeeEe
Q 019103 170 KTGFIYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSDGSSM--LYQIDPQTLKVIRKDIVR---YKGREVRNLNELEF 243 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~-~~~peGwGLt~Dg~~LyvSdGs~~--l~vIDp~T~kvi~~I~V~---~~G~pv~~lNELE~ 243 (346)
.+++++|....+..--++ +. -....+++|++++-.-..+++ .|-||-+....++ +.+. ++|.-.. .+
T Consensus 140 ~k~~~~~~~s~~~~~h~~~~~-~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S-~s---- 212 (344)
T KOG4532|consen 140 GKTMVVSGDSNKFAVHNQNLT-QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNS-FS---- 212 (344)
T ss_pred eeEEEEecCcccceeeccccc-eeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeee-ec----
Confidence 778888877766655555 22 245578899998877655665 5667766666665 4442 2232211 11
Q ss_pred eCCEEEEEecCCCeEEEEeCCCCeE
Q 019103 244 IKGEVWANVWQTDCIARISHEDGVV 268 (346)
Q Consensus 244 ~~G~LyaNv~~sn~I~vID~~TG~V 268 (346)
.+...||...+..++++-|....+.
T Consensus 213 ~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 213 ENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred cCcceEEEEecCCcEEEEEeccccc
Confidence 1457999999999999999988654
|
|
| >PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins | Back alignment and domain information |
|---|
Probab=81.16 E-value=4 Score=25.75 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=18.9
Q ss_pred eeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 291 VLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 291 vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
.|.|||.+ ..+.+|||...-..|.
T Consensus 3 ~P~gvav~-~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 3 YPHGVAVD-SDGNIYVADSGNHRVQ 26 (28)
T ss_dssp SEEEEEEE-TTSEEEEEECCCTEEE
T ss_pred CCcEEEEe-CCCCEEEEECCCCEEE
Confidence 68999999 6788999986655543
|
For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A. |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.06 E-value=53 Score=32.83 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=68.8
Q ss_pred CEEEEEEeeCCEEEEEEC-CCCcEEEEEecCCCceeEE--eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeee
Q 019103 160 EKLFQVTWLQKTGFIYDQ-NNLNKLEEFTHQMKDGWGL--ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVR 236 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~-~tl~~i~ti~~~~peGwGL--t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~ 236 (346)
+..++..-.++.|+..+. .+-+.....+--..+=++| +.|+..++-+-.+.+|+++|.+|++.+++.+... .
T Consensus 59 gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~-----~ 133 (338)
T KOG0265|consen 59 GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT-----S 133 (338)
T ss_pred CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc-----c
Confidence 456666666677776662 2333333333212233343 5688888876668899999999999999888754 2
Q ss_pred eceeeEeeC-C-EEEEEecCCCeEEEEeCCCCeEEEEE
Q 019103 237 NLNELEFIK-G-EVWANVWQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 237 ~lNELE~~~-G-~LyaNv~~sn~I~vID~~TG~Vv~~I 272 (346)
..|.+..-+ | .+..+...+.++-+-|..+-+.+.++
T Consensus 134 ~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 134 FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred eeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 556665443 3 45555555667888888876655554
|
|
| >PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.01 E-value=10 Score=40.18 Aligned_cols=109 Identities=19% Similarity=0.335 Sum_probs=63.1
Q ss_pred ceeEE---eeCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCC
Q 019103 192 DGWGL---ATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDG 266 (346)
Q Consensus 192 eGwGL---t~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG 266 (346)
|+..+ .++...+|++| + ...||.+=+...-- .... ..|.--...|+|||+-|..+ |
T Consensus 247 E~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~~~~~-------~~~~---~~~~~ll~~GtLyaak~~~~---------g 307 (524)
T PF05787_consen 247 EAAAVVLADPGRVVVYMGDDGRNGYLYKFVSDKPWD-------PGDR---AANRDLLDEGTLYAAKFNQD---------G 307 (524)
T ss_pred cceeEEeecCCeEEEEEEecCCCCeEEEEecCCCCC-------Cccc---chhhhhhhCCEeceEEECCC---------C
Confidence 55555 45556789987 3 55777665443110 0000 11111146799999988665 2
Q ss_pred eEEEEEECCch-------------hhhhhh-------ccCCCCceeeEEEEeCCCCEEEEe-------------------
Q 019103 267 VVLGWVLLPNL-------------RERLVA-------AGYNGIDVLNGIAWDSNRNRIFVT------------------- 307 (346)
Q Consensus 267 ~Vv~~I~l~~l-------------~~~~~~-------~~~~~~~vlNGIA~d~~~~~LfVT------------------- 307 (346)
-..||+|..- ...+.+ -+....+-|.||+++|..+++|+|
T Consensus 308 -~~~Wv~L~~~~~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~ 386 (524)
T PF05787_consen 308 -TGEWVPLGHGQGGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRA 386 (524)
T ss_pred -cEEEEECCCcccccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCccc
Confidence 2356666321 110000 022346789999999999999998
Q ss_pred cCCCCcEEEEEEe
Q 019103 308 GKLWPKLYEINLR 320 (346)
Q Consensus 308 GK~Wp~l~ev~l~ 320 (346)
+..++.||++...
T Consensus 387 ~n~~G~I~r~~~~ 399 (524)
T PF05787_consen 387 GNGYGQIYRYDPD 399 (524)
T ss_pred CCcccEEEEeccc
Confidence 4556688887754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 346 | ||||
| 2iwa_A | 266 | Unbound Glutaminyl Cyclotransferase From Carica Pap | 1e-101 | ||
| 3mbr_X | 243 | Crystal Structure Of The Glutaminyl Cyclase From Xa | 5e-47 | ||
| 3nol_A | 262 | Crystal Structure Of Zymomonas Mobilis Glutaminyl C | 8e-45 | ||
| 3nok_A | 268 | Crystal Structure Of Myxococcus Xanthus Glutaminyl | 3e-31 |
| >pdb|2IWA|A Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya. Length = 266 | Back alignment and structure |
|
| >pdb|3MBR|X Chain X, Crystal Structure Of The Glutaminyl Cyclase From Xanthomonas Campestris Length = 243 | Back alignment and structure |
|
| >pdb|3NOL|A Chain A, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase (Trigonal Form) Length = 262 | Back alignment and structure |
|
| >pdb|3NOK|A Chain A, Crystal Structure Of Myxococcus Xanthus Glutaminyl Cyclase Length = 268 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Length = 266 | Back alignment and structure |
|---|
Score = 265 bits (678), Expect = 2e-88
Identities = 170/255 (66%), Positives = 208/255 (81%), Gaps = 5/255 (1%)
Query: 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM 146
S +Y ++V+NEFPHDP AFTQGL+YAENDTLFESTGLYGRSSVR+VAL+TGKVE I++M
Sbjct: 3 SSRVYIVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM 62
Query: 147 EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGS 206
+ SYFGEGLTLL EKL+QV WL+ GFIYD+ L+ ++ FTHQMKDGWGLATDGK+L+GS
Sbjct: 63 DDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGS 122
Query: 207 DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDG 266
DG+S+LY+IDP T K+I+K V+Y G V LNELE+I GEVWAN+WQTDCIARIS +DG
Sbjct: 123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDG 182
Query: 267 VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRER 326
+LGW+LLPNLR++L+ G+ IDVLNGIAWD RIFVTGKLWPKL+EI L ++
Sbjct: 183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVRHRI 242
Query: 327 KDGFNVDTIIEQLCL 341
DG+ IE+ CL
Sbjct: 243 PDGY-----IERHCL 252
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Length = 243 | Back alignment and structure |
|---|
Score = 240 bits (614), Expect = 5e-79
Identities = 100/240 (41%), Positives = 138/240 (57%), Gaps = 2/240 (0%)
Query: 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ 145
+VV +PHD AFT+GL Y L+ESTG GRSSVR+V LETG++ +
Sbjct: 2 DPVPTQGYRVVKRYPHDTTAFTEGLFYL-RGHLYESTGETGRSSVRKVDLETGRILQRAE 60
Query: 146 MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG 205
+ YFG G+ ++L Q+TW GF+YD L F + +GW L +D L+
Sbjct: 61 VPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYM 119
Query: 206 SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHED 265
SDG++++ ++DP TL+ + V GR + NLNELE++ GE+ ANVW T IARI
Sbjct: 120 SDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPAS 179
Query: 266 GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRE 325
G V+ W+ L L A + DVLNGIA+D+ +R+FVTGK WP LYEI L +
Sbjct: 180 GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTPLPHA 239
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Length = 262 | Back alignment and structure |
|---|
Score = 241 bits (615), Expect = 8e-79
Identities = 101/237 (42%), Positives = 147/237 (62%), Gaps = 3/237 (1%)
Query: 85 DQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN 144
S IY Q+V+ +PHD +AFT+G Y N +ESTGL GRSS+R+V +E+GK
Sbjct: 23 TPSIPIYDYQIVHSYPHDTKAFTEGFFY-RNGYFYESTGLNGRSSIRKVDIESGKTLQQI 81
Query: 145 QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLF 204
++ YFGEG++ +K+ +TW GF+++ NL ++ F + +GWGL + + L
Sbjct: 82 ELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNY-DGEGWGLTHNDQYLI 140
Query: 205 GSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHE 264
SDG+ +L +DP++L +R V G E+ LNELE++ GE++ANVWQT+ I RI E
Sbjct: 141 MSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPE 200
Query: 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321
G V G + L + + IDVLNGIAWD +R+FVTGKLWPK++EI L +
Sbjct: 201 TGKVTGIIDLNGILAE-AGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLTQ 256
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Length = 268 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 3e-78
Identities = 79/241 (32%), Positives = 123/241 (51%), Gaps = 5/241 (2%)
Query: 82 PGVDQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVE 141
G Q P ++ E+PH AFTQGL++ FESTG G ++R+++LE+ +
Sbjct: 32 GGSVQEPVRRVAHIIREYPHATNAFTQGLVFH-QGHFFESTGHQG--TLRQLSLESAQPV 88
Query: 142 AINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGK 201
+ G+ F EGL GE+L+Q+TW + F + + + +GWGL
Sbjct: 89 W-MERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLCYWNG 146
Query: 202 VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARI 261
L SDG +ML +P ++ V+ +G+ V +NELE G ++AN+W + + I
Sbjct: 147 KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEI 206
Query: 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321
G V+G + L + N VLNGIA + RIF+TGKLWP+L+E+ L
Sbjct: 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRLDV 266
Query: 322 M 322
+
Sbjct: 267 V 267
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Length = 328 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 6e-06
Identities = 35/228 (15%), Positives = 70/228 (30%), Gaps = 21/228 (9%)
Query: 121 STGLY---------GRSSVRRVALETGKVEA-----INQMEGSYFGEGLTLLGEKLFQVT 166
++GL+ +++ T +VE N + + + + + V
Sbjct: 1 ASGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVV 60
Query: 167 WLQKTGFIYDQNNLNKLEEFTHQMK-DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225
F D N ++ T +D K ++ I+P+T ++
Sbjct: 61 NNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120
Query: 226 DIVRYKGREVRNLNELEFIKGEVWANVWQTDC-IARISHEDGVVLGWVLLPNLRERLVAA 284
E + ++ V+ N W I +I E V+ + + LV
Sbjct: 121 IECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMD 180
Query: 285 GYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKDGFNV 332
YN + + G P LY I+ E++ F +
Sbjct: 181 KYNKMWTIT-----DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL 223
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 100.0 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 100.0 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 100.0 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 100.0 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.9 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.9 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.85 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.83 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.82 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.82 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.81 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.81 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.8 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.79 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.78 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.78 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.76 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.75 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.75 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.75 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.75 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.75 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.75 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.74 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.74 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.73 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.72 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.72 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.72 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.7 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.7 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.7 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.68 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.68 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.67 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.67 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.67 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.65 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.64 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.63 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.62 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.61 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.61 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.61 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.6 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.6 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.6 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.59 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.59 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.57 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.56 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.55 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.55 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.55 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.53 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.53 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.52 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.52 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.51 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.51 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.5 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.5 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.5 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.49 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.49 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 99.48 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.48 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.48 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.48 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.47 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.46 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.45 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.44 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.43 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.42 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.42 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.4 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.4 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.4 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.4 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.39 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.38 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 99.36 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.32 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.31 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 99.3 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 99.29 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.29 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.28 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.27 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.26 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.23 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.22 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 99.21 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.18 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.18 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.17 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.17 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 99.16 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.16 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.14 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.14 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.13 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.13 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.11 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.11 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.09 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.08 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.08 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 99.07 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.06 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.05 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 99.04 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.04 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.04 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.03 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.03 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.02 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.02 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.01 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.99 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.98 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.98 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.97 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.97 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.97 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.94 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.94 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.9 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.89 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.89 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.89 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.88 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.87 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.87 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.87 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.87 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.86 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.85 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.85 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.85 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.84 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.83 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.83 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.83 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.83 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.81 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.81 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.81 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.8 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.78 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.78 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.78 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.77 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.77 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.76 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.76 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.76 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.75 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.75 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.75 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.74 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.74 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.74 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.73 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 98.73 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.73 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.72 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.71 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.69 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.69 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.68 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.68 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.68 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.67 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.67 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.67 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.67 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.67 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.66 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.65 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.63 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.63 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.62 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.62 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.62 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.62 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 98.62 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.6 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.6 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.59 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.59 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.58 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.57 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.57 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.57 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.56 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.55 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.54 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.54 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.53 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.53 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 98.52 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.52 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.52 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.52 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.52 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.51 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.51 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.51 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.5 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.5 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.5 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.49 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.48 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.48 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 98.47 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.47 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 98.45 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.45 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.43 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.42 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.4 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.4 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.39 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.39 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.38 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.38 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.38 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.37 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.37 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.37 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.37 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.37 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.36 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.35 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.34 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.34 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.34 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 98.33 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.33 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.3 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.3 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 98.29 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 98.28 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.28 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.27 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.26 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.26 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.26 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.26 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.25 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.25 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.21 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.2 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 98.19 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.19 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 98.16 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.14 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.14 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.13 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.13 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 98.12 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.11 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 98.11 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 98.1 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.1 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.09 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.09 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.08 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.07 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.02 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.01 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.01 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.99 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.95 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.95 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.95 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.94 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.93 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 97.92 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.89 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 97.89 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.85 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.85 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.84 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.82 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 97.82 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.79 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 97.79 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.78 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 97.77 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.77 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 97.77 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.76 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.74 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 97.72 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.68 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.59 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.58 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.58 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.58 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.57 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.57 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.57 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.56 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.55 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.51 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.45 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.43 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.28 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.18 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.12 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 97.06 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.02 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.94 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.94 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 96.84 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 96.82 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 96.8 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.7 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 96.66 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.52 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.5 | |
| 3s9j_A | 369 | Member of DUF4221 family; 6-bladed beta-propeller, | 95.8 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 95.75 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.65 | |
| 3s9j_A | 369 | Member of DUF4221 family; 6-bladed beta-propeller, | 95.47 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.45 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.83 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 94.17 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 93.97 | |
| 3elq_A | 571 | Arylsulfate sulfotransferase; beta propeller, prot | 90.88 | |
| 3elq_A | 571 | Arylsulfate sulfotransferase; beta propeller, prot | 85.97 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 85.5 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 83.91 |
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-70 Score=510.64 Aligned_cols=239 Identities=42% Similarity=0.731 Sum_probs=223.9
Q ss_pred CCCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE
Q 019103 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV 165 (346)
Q Consensus 86 ~~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l 165 (346)
..++.++++|+++||||+.+|||||+|++ ++||||||+||+|+|+++|++||++++++++++.+||||+++++++|||+
T Consensus 2 ~~~~~~~~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~l 80 (243)
T 3mbr_X 2 DPVPTQGYRVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQL 80 (243)
T ss_dssp -CCCBCCEEEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEE
T ss_pred CCCcccceEEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEE
Confidence 46788999999999999999999999995 89999999999999999999999999999999999999999999999999
Q ss_pred EeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC
Q 019103 166 TWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~ 245 (346)
||+++.++|||++|++++++|+++ ++||||++|+++||||||+++|+++||+|++++++|+|+.+|+|+.++||||+++
T Consensus 81 tw~~~~v~v~D~~tl~~~~ti~~~-~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~ 159 (243)
T 3mbr_X 81 TWRNHEGFVYDLATLTPRARFRYP-GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVN 159 (243)
T ss_dssp ESSSSEEEEEETTTTEEEEEEECS-SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred EeeCCEEEEEECCcCcEEEEEeCC-CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeC
Confidence 999999999999999999999998 6999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeecccc
Q 019103 246 GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRE 325 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~ 325 (346)
|+||||+|++|+|++|||+||+|+++|++++|.+.....+.+.++|||||||||++++||||||+||+||||+|.++...
T Consensus 160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~~~~~ 239 (243)
T 3mbr_X 160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTPLPHA 239 (243)
T ss_dssp TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECCCCC-
T ss_pred CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEecCCcc
Confidence 99999999999999999999999999999888765321112567899999999999999999999999999999986655
Q ss_pred c
Q 019103 326 R 326 (346)
Q Consensus 326 ~ 326 (346)
+
T Consensus 240 ~ 240 (243)
T 3mbr_X 240 A 240 (243)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-68 Score=501.95 Aligned_cols=235 Identities=43% Similarity=0.787 Sum_probs=222.3
Q ss_pred CCCCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEE
Q 019103 85 DQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQ 164 (346)
Q Consensus 85 ~~~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ 164 (346)
...++.++++|+++||||+++|||||+|+ |++||||+|+||+|+|+++|++|||+++++++++++||||+++++++|||
T Consensus 23 ~~~~~~~~~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ 101 (262)
T 3nol_A 23 TPSIPIYDYQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVG 101 (262)
T ss_dssp --CCCEEEEEEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEE
T ss_pred CCCCcccceEEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEE
Confidence 45788999999999999999999999999 68999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019103 165 VTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 165 ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
+||+++.++|||++|++++++|+++ ++||||++|+++||+|||+++|++|||+|++++++|+|+.+|+|+.++||||++
T Consensus 102 ltw~~~~v~v~D~~t~~~~~ti~~~-~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNLRQVRSFNYD-GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECS-SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred EEeeCCEEEEEECccCcEEEEEECC-CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence 9999999999999999999999998 699999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec
Q 019103 245 KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~ 322 (346)
+|+||||+|++|+|++|||+||+|+++|++++|.+.... ..+.++|||||||||++++||||||+||+||||+|.+.
T Consensus 181 ~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~-~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~~~ 257 (262)
T 3nol_A 181 DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP-LPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLTQR 257 (262)
T ss_dssp TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS-CCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc-ccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEecC
Confidence 999999999999999999999999999999888764310 13557899999999999999999999999999999874
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-65 Score=482.31 Aligned_cols=229 Identities=34% Similarity=0.602 Sum_probs=214.2
Q ss_pred CCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEE
Q 019103 87 SPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT 166 (346)
Q Consensus 87 ~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~lt 166 (346)
.|-.-..+|+++||||+++|||||+|+ +++||||+|+|| +|+++|++|||+++++ +++.+||||+++++++|||+|
T Consensus 37 ~~~~~~~~Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g--~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~lt 112 (268)
T 3nok_A 37 EPVRRVAHIIREYPHATNAFTQGLVFH-QGHFFESTGHQG--TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLT 112 (268)
T ss_dssp CCEEEEEEEEEEEECCTTCCEEEEEEE-TTEEEEEETTTT--EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEE
T ss_pred CccccceEEEEEEcCCCccccceEEEE-CCEEEEEcCCCC--EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEE
Confidence 344556799999999999999999998 589999999888 4999999999999999 999999999999999999999
Q ss_pred eeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC
Q 019103 167 WLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG 246 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G 246 (346)
|+++.++|||++|++++++|+++ ++||||++||++||+|||+++|++|||+|++++++|+|+.+|+++.++||||+++|
T Consensus 113 w~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG 191 (268)
T 3nok_A 113 WTEGLLFTWSGMPPQRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANG 191 (268)
T ss_dssp SSSCEEEEEETTTTEEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred ccCCEEEEEECCcCcEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC
Confidence 99999999999999999999997 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+||||+|++|+|++|||+||+|+++|++++|.+.......+.++|||||||||++++||||||+||+||||+|.
T Consensus 192 ~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~~ 265 (268)
T 3nok_A 192 VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRLD 265 (268)
T ss_dssp EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEEE
Confidence 99999999999999999999999999998887653311224578999999999999999999999999999995
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-63 Score=469.88 Aligned_cols=252 Identities=67% Similarity=1.219 Sum_probs=235.1
Q ss_pred CCCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEE
Q 019103 86 QSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQV 165 (346)
Q Consensus 86 ~~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~l 165 (346)
.+++.++++|+++|||++.+|||||+|++|++||||+|+|++++|+++|++||++++++++++.+||||+++++++||++
T Consensus 2 ~~~~~~~~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~ 81 (266)
T 2iwa_A 2 PSSRVYIVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQV 81 (266)
T ss_dssp CCCCEEEEEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEE
T ss_pred CCCCccCceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEE
Confidence 46788999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred EeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC
Q 019103 166 TWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~ 245 (346)
+|.++.++|||++|++++++|++++|+||||++||++||+|||+++|++|||+|++++++|+|+.+|+|+.++||||+.+
T Consensus 82 t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~d 161 (266)
T 2iwa_A 82 VWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYIN 161 (266)
T ss_dssp ETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET
T ss_pred EecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEEC
Confidence 99999999999999999999998768999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeecccc
Q 019103 246 GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRE 325 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~ 325 (346)
|+||||+|.+|+|++||++||+|+++|+++++.+.......+..++||||||+|++++||||||+||+||+|+|.+.+.+
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~~~ 241 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVRHR 241 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECCSC
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecccCC
Confidence 99999999999999999999999999999766543111223557899999999999999999999999999999998877
Q ss_pred ccCCCchhHHHhhhhhc
Q 019103 326 RKDGFNVDTIIEQLCLL 342 (346)
Q Consensus 326 ~~~~~~~~~~~~~~~~~ 342 (346)
.+.+ .|||+|+-
T Consensus 242 ~~~~-----~~~~~~~~ 253 (266)
T 2iwa_A 242 IPDG-----YIERHCLN 253 (266)
T ss_dssp CCTT-----HHHHHHSC
T ss_pred cchh-----HHHhhCcc
Confidence 7777 99999963
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-21 Score=183.77 Aligned_cols=187 Identities=12% Similarity=0.096 Sum_probs=155.3
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE-eCCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~-~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
.+.+++.++ +++||+++. +++.|.++|++|++++.+++....+ .+++. .+++||+++..++.+.++|+++++++
T Consensus 44 ~~~~~i~~~-~~~lyv~~~--~~~~v~viD~~t~~~~~~i~~~~~p--~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~ 118 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVN--NSHVIFAIDINTFKEVGRITGFTSP--RYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT 118 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEG--GGTEEEEEETTTCCEEEEEECCSSE--EEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred ccceEEEEE-CCEEEEEEc--CCCEEEEEECcccEEEEEcCCCCCC--cEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 456899996 589999987 6679999999999999998755554 55666 56799999978999999999999999
Q ss_pred EEEecC-------CCceeEEeeCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEec
Q 019103 184 EEFTHQ-------MKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVW 253 (346)
Q Consensus 184 ~ti~~~-------~peGwGLt~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~ 253 (346)
++++.+ .|+|..+ ++++||+++ + +++|++||++|+++++++.++. .| +.+.+. +|++|+..+
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~--~p----~~i~~~~dG~l~v~~~ 190 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI--QP----TSLVMDKYNKMWTITD 190 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS--CB----CCCEECTTSEEEEEBC
T ss_pred EEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC--Cc----cceEEcCCCCEEEEEC
Confidence 999975 2454444 899999998 4 8899999999999999999865 23 345555 689999887
Q ss_pred CC----------CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 254 QT----------DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 254 ~s----------n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.. +.|.+||++|++++.++.++. +..|++||++|++++|||++. .+|.+.+
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~------------g~~p~~la~~~d~~~lyv~~~---~v~~~d~ 251 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL------------GDWPSEVQLNGTRDTLYWINN---DIWRMPV 251 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT------------TCCCEEEEECTTSCEEEEESS---SEEEEET
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCC------------CCCceeEEEecCCCEEEEEcc---EEEEEEC
Confidence 65 899999999999999997621 236899999999999999986 8887765
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=188.15 Aligned_cols=205 Identities=14% Similarity=0.143 Sum_probs=162.7
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe----eEEEEEEeCCEEEEEEe
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY----FGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~----FgeGit~~g~~LY~ltw 167 (346)
+.+++++++....| .+++++++++||+++. ..+.|.+||++|+++...++++... .++|++..+++||+++|
T Consensus 73 t~~~~~~i~~~~~p--~~i~~~~~g~lyv~~~--~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~ 148 (328)
T 3dsm_A 73 TFKEVGRITGFTSP--RYIHFLSDEKAYVTQI--WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW 148 (328)
T ss_dssp TCCEEEEEECCSSE--EEEEEEETTEEEEEEB--SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC
T ss_pred ccEEEEEcCCCCCC--cEEEEeCCCeEEEEEC--CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC
Confidence 56788888876566 7999988899999985 3579999999999999999887621 45778889999999999
Q ss_pred -eCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCC----------CeEEEEeCCCCcEEEEEEeccCCeee
Q 019103 168 -LQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGS----------SMLYQIDPQTLKVIRKDIVRYKGREV 235 (346)
Q Consensus 168 -~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs----------~~l~vIDp~T~kvi~~I~V~~~G~pv 235 (346)
.++.+.+||+++++++++++.+ .|.+..+++||+.++++.+. +.|++||++|+++++++.+.....|
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p- 227 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWP- 227 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCC-
T ss_pred CCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCc-
Confidence 5999999999999999999986 67888899988744444464 7999999999999999988532233
Q ss_pred eeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec----C
Q 019103 236 RNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG----K 309 (346)
Q Consensus 236 ~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG----K 309 (346)
+.|.+. +++||+.+. .|.+||++++++... .+.+ ..+..|+|||+||++++|||++ .
T Consensus 228 ---~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~----~~~~-------~~~~~p~gi~vdp~~g~lyva~~~~y~ 290 (328)
T 3dsm_A 228 ---SEVQLNGTRDTLYWINN---DIWRMPVEADRVPVR----PFLE-------FRDTKYYGLTVNPNNGEVYVADAIDYQ 290 (328)
T ss_dssp ---EEEEECTTSCEEEEESS---SEEEEETTCSSCCSS----CSBC-------CCSSCEEEEEECTTTCCEEEEECTTSS
T ss_pred ---eeEEEecCCCEEEEEcc---EEEEEECCCCceeee----eeec-------CCCCceEEEEEcCCCCeEEEEcccccc
Confidence 457666 568999864 899999999997421 1100 0145799999999999999998 5
Q ss_pred CCCcEEEEE
Q 019103 310 LWPKLYEIN 318 (346)
Q Consensus 310 ~Wp~l~ev~ 318 (346)
.-++|+.+.
T Consensus 291 ~~~~V~v~d 299 (328)
T 3dsm_A 291 QQGIVYRYS 299 (328)
T ss_dssp SEEEEEEEC
T ss_pred cCCEEEEEC
Confidence 556777664
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=193.26 Aligned_cols=190 Identities=10% Similarity=-0.008 Sum_probs=154.3
Q ss_pred CEEEEEcCCCCC--CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe---------eCCEEEEEECCCCcEEE
Q 019103 116 DTLFESTGLYGR--SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 116 ~~LyeStGlyg~--s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw---------~~~~v~V~D~~tl~~i~ 184 (346)
.++|+++...+. +.|.+||++|++++.+++++..+ +..++.++++||++++ .++.|.|||+.|+++++
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~ 163 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA 163 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE
Confidence 379999873322 79999999999999999999988 8777788999999996 57889999999999999
Q ss_pred EEecC---------CCceeEEeeCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEeccC-----------------Ce---
Q 019103 185 EFTHQ---------MKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYK-----------------GR--- 233 (346)
Q Consensus 185 ti~~~---------~peGwGLt~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~~-----------------G~--- 233 (346)
+|+++ .|++..+++||++||++| . ++.|.+||++|++++++|+|+.. |+
T Consensus 164 ~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~ 243 (426)
T 3c75_H 164 DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLAR 243 (426)
T ss_dssp EEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEE
T ss_pred EEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEE
Confidence 99874 478999999999999998 3 78999999999999999998310 00
Q ss_pred -------ee------------------------------------eecee------------------------------
Q 019103 234 -------EV------------------------------------RNLNE------------------------------ 240 (346)
Q Consensus 234 -------pv------------------------------------~~lNE------------------------------ 240 (346)
.. .-++.
T Consensus 244 V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~ 323 (426)
T 3c75_H 244 VDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQ 323 (426)
T ss_dssp EECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSC
T ss_pred EECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCcee
Confidence 00 00000
Q ss_pred eEe--eCCEEEEEec---------CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC-EEEEec
Q 019103 241 LEF--IKGEVWANVW---------QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN-RIFVTG 308 (346)
Q Consensus 241 LE~--~~G~LyaNv~---------~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~LfVTG 308 (346)
+.+ .++++||++. .+++|+|||++|++|+++|+++ ..|+||+++||++ ++||++
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--------------~~P~gia~spDg~~~lyv~n 389 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--------------HEIDSINVSQDAEPLLYALS 389 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--------------EEECEEEECCSSSCEEEEEE
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--------------CCcCeEEEccCCCEEEEEEc
Confidence 111 1368999774 2578999999999999999762 2589999999999 999998
Q ss_pred CCCCcEEEEEEe
Q 019103 309 KLWPKLYEINLR 320 (346)
Q Consensus 309 K~Wp~l~ev~l~ 320 (346)
...+.|..|.+.
T Consensus 390 ~~s~~VsVID~~ 401 (426)
T 3c75_H 390 AGTQTLHIYDAA 401 (426)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEEECC
Confidence 888999999873
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-19 Score=163.01 Aligned_cols=208 Identities=17% Similarity=0.249 Sum_probs=170.0
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe--------eEEEEEE--eCC
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSY--------FGEGLTL--LGE 160 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~--------FgeGit~--~g~ 160 (346)
+.+++.+++.+..+ .++.+++||+ +|+++. +++.|.+||+++++++..+.++... ...+++. +++
T Consensus 78 ~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 153 (353)
T 3vgz_A 78 TLEVTQAIHNDLKP--FGATINNTTQTLWFGNT--VNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN 153 (353)
T ss_dssp TCCEEEEEEESSCC--CSEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT
T ss_pred CCeEEEEEecCCCc--ceEEECCCCCEEEEEec--CCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC
Confidence 45677888876666 6999999884 999877 5679999999999999999885421 1344555 678
Q ss_pred EEEEEEee-CCEEEEEECCCCcEEEEEe-cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeee
Q 019103 161 KLFQVTWL-QKTGFIYDQNNLNKLEEFT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (346)
Q Consensus 161 ~LY~ltw~-~~~v~V~D~~tl~~i~ti~-~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~ 237 (346)
++|++++. ++.++++|.++++.+.+++ .+ .+.+..+++||++||+++.++.|+++|+++++++.++.++..|.. ..
T Consensus 154 ~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~ 232 (353)
T 3vgz_A 154 TVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKE-HF 232 (353)
T ss_dssp EEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSC-CC
T ss_pred EEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCC-cc
Confidence 99999974 7889999999999999998 44 478889999999999999999999999999999999988544321 23
Q ss_pred ceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 238 LNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 238 lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
.+.+.+. ++++|+.....+.|.++|+++++++..+.++. +.+++|+|+++++||++..-+.|+
T Consensus 233 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------------~~~~~~s~dg~~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 233 FINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---------------SLAVLFNPARNEAYVTHRQAGKVS 297 (353)
T ss_dssp EEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---------------CCCEEEETTTTEEEEEETTTTEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---------------CceEEECCCCCEEEEEECCCCeEE
Confidence 3445555 45899999888999999999999999997521 267999999999999998888888
Q ss_pred EEEE
Q 019103 316 EINL 319 (346)
Q Consensus 316 ev~l 319 (346)
.+.+
T Consensus 298 ~~d~ 301 (353)
T 3vgz_A 298 VIDA 301 (353)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8875
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-19 Score=163.29 Aligned_cols=206 Identities=14% Similarity=0.105 Sum_probs=166.0
Q ss_pred EEEEecCCCCcceeEEEecCC-EEEEEcCCC----CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC
Q 019103 96 VNEFPHDPRAFTQGLLYAEND-TLFESTGLY----GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~-~LyeStGly----g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
+.+.++...+ .++++++|+ .||+++... .++.|.+||+++++++..++.+..+.+..++.+++++|+++..++
T Consensus 34 ~~~~~~~~~~--~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 34 MLRKAVGKGA--YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp EEEEEEESSE--EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTT
T ss_pred hhhhhhccCc--cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCC
Confidence 4455666666 599999987 788887521 157999999999999999998887777777777889999999999
Q ss_pred EEEEEECCCCcEEEEEecCC-----------CceeEEeeCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEE-eccCCeeee
Q 019103 171 TGFIYDQNNLNKLEEFTHQM-----------KDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDI-VRYKGREVR 236 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~-----------peGwGLt~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~-V~~~G~pv~ 236 (346)
.+.++|.++++.+.+++.+. +.+..+++||+++|+++ + ++.|+++|+++++++..+. .+.. +
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~-- 187 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM--S-- 187 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT--C--
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc--c--
Confidence 99999999999999998742 45677899999999988 4 6789999999999998887 3321 2
Q ss_pred eceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 237 NLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 237 ~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
+.+.+. +++||+... .+.|.++|+++++++..+....- .....+++|+++|+++++|+++..-+.|
T Consensus 188 --~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~dg~~l~~~~~~~~~v 255 (353)
T 3vgz_A 188 --TGLALDSEGKRLYTTNA-DGELITIDTADNKILSRKKLLDD---------GKEHFFINISLDTARQRAFITDSKAAEV 255 (353)
T ss_dssp --CCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEEECCCS---------SSCCCEEEEEEETTTTEEEEEESSSSEE
T ss_pred --ceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEEEcCCC---------CCCcccceEEECCCCCEEEEEeCCCCEE
Confidence 234444 457999876 78999999999999999976321 1123689999999999999999888888
Q ss_pred EEEEE
Q 019103 315 YEINL 319 (346)
Q Consensus 315 ~ev~l 319 (346)
+.+.+
T Consensus 256 ~~~d~ 260 (353)
T 3vgz_A 256 LVVDT 260 (353)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88875
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=182.05 Aligned_cols=173 Identities=12% Similarity=-0.045 Sum_probs=142.3
Q ss_pred eeeEEEEEEecCCCCcceeEEEecCC-EEEEEcCC-------CCCCeEEEEECCCCcEEEEeccC--------CCeeEEE
Q 019103 91 YTIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGL-------YGRSSVRRVALETGKVEAINQME--------GSYFGEG 154 (346)
Q Consensus 91 ~t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGl-------yg~s~V~~iDl~Tgkv~~~~~l~--------~~~FgeG 154 (346)
.+.+++.++|.+..| |+++++|| +||+++.. .+.+.|.+||+.|++++++++++ ..+.+..
T Consensus 107 ~t~~vv~~I~vG~~P---gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~ 183 (426)
T 3c75_H 107 STGRILGMTDGGFLP---HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNA 183 (426)
T ss_dssp TTTEEEEEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred CCCEEEEEEECCCCC---ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEE
Confidence 378999999997766 99999998 59999731 12468999999999999999886 3455666
Q ss_pred EEEeCCEEEEEEee-CCEEEEEECCCCcEEEEEecCC-------------------------------------------
Q 019103 155 LTLLGEKLFQVTWL-QKTGFIYDQNNLNKLEEFTHQM------------------------------------------- 190 (346)
Q Consensus 155 it~~g~~LY~ltw~-~~~v~V~D~~tl~~i~ti~~~~------------------------------------------- 190 (346)
++.+|++||++++. ++.|.|||+++++++++|+++.
T Consensus 184 ~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~ 263 (426)
T 3c75_H 184 LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED 263 (426)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT
T ss_pred EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC
Confidence 67789999999986 8999999999999999887620
Q ss_pred ------------------------------------------------------Cce---eEEeeCCCEEEEEC------
Q 019103 191 ------------------------------------------------------KDG---WGLATDGKVLFGSD------ 207 (346)
Q Consensus 191 ------------------------------------------------------peG---wGLt~Dg~~LyvSd------ 207 (346)
|.| .++++|+++||+++
T Consensus 264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW 343 (426)
T ss_dssp SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccc
Confidence 112 45677889999986
Q ss_pred ----CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CC-EEEEEecCCCeEEEEeCCCCeEEEEE
Q 019103 208 ----GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KG-EVWANVWQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 208 ----Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G-~LyaNv~~sn~I~vID~~TG~Vv~~I 272 (346)
++++|++||++|++++++|+++. .|.. +++. +. ++|+++|.+++|+|||++|++++++|
T Consensus 344 thk~~s~~VsVID~~T~kvv~~I~vg~--~P~g----ia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 344 KHKAASRFVVVLNAETGERINKIELGH--EIDS----INVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEE--EECE----EEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccCCCCEEEEEECCCCeEEEEEECCC--CcCe----EEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 25789999999999999999976 3433 5554 45 79999999999999999999999998
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=165.17 Aligned_cols=167 Identities=13% Similarity=-0.001 Sum_probs=141.8
Q ss_pred CCcEEEEeccCCCeeEEEEEEeC-CEEEEEEe--eCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCe
Q 019103 137 TGKVEAINQMEGSYFGEGLTLLG-EKLFQVTW--LQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSM 211 (346)
Q Consensus 137 Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw--~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~ 211 (346)
+.++++++++++..|.+|+++++ ++||+++- .++.+.++|++|++++++++.+ .+.|-|++.+|++||+++ .++.
T Consensus 8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 8 IVEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSE
T ss_pred CceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCE
Confidence 46799999999999999999987 89999984 4799999999999999999985 457778898999999987 6999
Q ss_pred EEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCce
Q 019103 212 LYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDV 291 (346)
Q Consensus 212 l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~v 291 (346)
++++|++|++++++|+++ .+.+.. |.++++++|+++ .++.|.+|||+|.+++.+|.+.. .+. ....
T Consensus 88 v~viD~~t~~v~~~i~~g-~~~g~g----lt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~-~~~-------p~~~ 153 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQ-MKDGWG----LATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKY-NGH-------RVIR 153 (266)
T ss_dssp EEEEETTTTEEEEEEECC-SSSCCE----EEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEE-TTE-------ECCC
T ss_pred EEEEECCCCcEEEEEECC-CCCeEE----EEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECC-CCc-------cccc
Confidence 999999999999999997 344443 667777999998 59999999999999999998832 111 1235
Q ss_pred eeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 292 LNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 292 lNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
||+++|. + +++|++...-+.|..|..
T Consensus 154 ~nele~~-d-g~lyvn~~~~~~V~vID~ 179 (266)
T 2iwa_A 154 LNELEYI-N-GEVWANIWQTDCIARISA 179 (266)
T ss_dssp EEEEEEE-T-TEEEEEETTSSEEEEEET
T ss_pred ceeEEEE-C-CEEEEecCCCCeEEEEEC
Confidence 8999999 4 499999877789999876
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-18 Score=164.12 Aligned_cols=208 Identities=7% Similarity=-0.082 Sum_probs=149.5
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCC-------CCCCeEEEEECCCCcEEEEeccC--------CCeeEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGL-------YGRSSVRRVALETGKVEAINQME--------GSYFGEGL 155 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGl-------yg~s~V~~iDl~Tgkv~~~~~l~--------~~~FgeGi 155 (346)
+.+++.++|.+..+ |++++||| +||+++-. ..++.|.+||++|++++.+++++ ..+.+..+
T Consensus 56 t~~~~~~i~~g~~p---~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~ 132 (373)
T 2mad_H 56 SGSILGHVNGGFLP---NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CCeEEEEecCCCCC---CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE
Confidence 56788999986555 99999998 69999742 13578999999999999999886 23445556
Q ss_pred EEeCCEEEEEEee-CCEEEEEECCCCcEEEE-EecCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEE-----
Q 019103 156 TLLGEKLFQVTWL-QKTGFIYDQNNLNKLEE-FTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDI----- 227 (346)
Q Consensus 156 t~~g~~LY~ltw~-~~~v~V~D~~tl~~i~t-i~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~----- 227 (346)
+++|++||+++.. ++.+.||| ++++++++ ++.+ .++.+.+++++.|+++ +++++.+||. +++++.++.
T Consensus 133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~ 208 (373)
T 2mad_H 133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP--TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML 208 (373)
T ss_pred CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC--ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc
Confidence 6689999999986 79999999 99999999 8874 3455666666666654 4556666666 555543222
Q ss_pred ---------------------------------------------eccC-----C-eeee-eceeeEeeCCEEEEEec--
Q 019103 228 ---------------------------------------------VRYK-----G-REVR-NLNELEFIKGEVWANVW-- 253 (346)
Q Consensus 228 ---------------------------------------------V~~~-----G-~pv~-~lNELE~~~G~LyaNv~-- 253 (346)
+... + .|.. +.-.+...++++||.+-
T Consensus 209 ~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 209 TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 1100 0 0000 00011122468998653
Q ss_pred -------CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC-EEEEecCCCCcEEEEEEe
Q 019103 254 -------QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN-RIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 254 -------~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~LfVTGK~Wp~l~ev~l~ 320 (346)
.++.|++||++|++++++|++.. .|+|||++||++ ++|+++...+.|+.|.+.
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--------------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQISLGH--------------DVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEECCC--------------CcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 35789999999999999997622 469999999999 899997777999999874
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=175.11 Aligned_cols=185 Identities=6% Similarity=-0.160 Sum_probs=146.8
Q ss_pred CEEEEEcCCCCCC----eEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe---------eCCEEEEEECCCCcE
Q 019103 116 DTLFESTGLYGRS----SVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLNK 182 (346)
Q Consensus 116 ~~LyeStGlyg~s----~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw---------~~~~v~V~D~~tl~~ 182 (346)
+++|+++. +.+ .|.+||++|++++.+++++..+ +..++++++++|++++ .++.+.|||+.|+++
T Consensus 32 ~~~yV~~~--~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 32 RRSHITLP--AYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp TEEEEEEC--TTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred CeEEEECC--ccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 57899987 444 8999999999999999999888 7777778999999995 579999999999999
Q ss_pred EEEEecC---------CCceeEEeeCCCEEEEEC-C-CCeEEE--EeCCCCcEEEEEEecc-------------------
Q 019103 183 LEEFTHQ---------MKDGWGLATDGKVLFGSD-G-SSMLYQ--IDPQTLKVIRKDIVRY------------------- 230 (346)
Q Consensus 183 i~ti~~~---------~peGwGLt~Dg~~LyvSd-G-s~~l~v--IDp~T~kvi~~I~V~~------------------- 230 (346)
+++++.+ .|++.+++|||++|||+| + ++.|.+ ||++| +++|.++.
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg 185 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTT
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCC
Confidence 9999874 489999999999999998 4 678999 99988 45565421
Q ss_pred -------------CCeee------------------------------eece----e-----------------------
Q 019103 231 -------------KGREV------------------------------RNLN----E----------------------- 240 (346)
Q Consensus 231 -------------~G~pv------------------------------~~lN----E----------------------- 240 (346)
.|+.. ..++ .
T Consensus 186 ~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred CEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 01000 0000 0
Q ss_pred ---eEe--eCCEEEEEec-C-------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 241 ---LEF--IKGEVWANVW-Q-------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 241 ---LE~--~~G~LyaNv~-~-------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+.+ +++++||+++ + .+.+.|||++|++++++|.++ .-|+||+++||++++|||
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--------------~~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--------------HDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--------------EEECEEEECCSSSCEEEE
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--------------CCcceEEECCCCCEEEEE
Confidence 112 2358999877 3 467889999999999999762 147999999999999999
Q ss_pred cC-CCCcEEEEEEe
Q 019103 308 GK-LWPKLYEINLR 320 (346)
Q Consensus 308 GK-~Wp~l~ev~l~ 320 (346)
+. ..++|.-|.+.
T Consensus 332 ~~~~~~~VsVID~~ 345 (368)
T 1mda_H 332 NSAGTEVLDIYDAA 345 (368)
T ss_dssp EETTTTEEEEEESS
T ss_pred ccCCCCeEEEEECC
Confidence 98 68999999874
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-18 Score=175.10 Aligned_cols=213 Identities=15% Similarity=0.093 Sum_probs=166.5
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECC--CCcEEEEeccCCCeeEEEEE----EeCCEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALE--TGKVEAINQMEGSYFGEGLT----LLGEKLFQ 164 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~--Tgkv~~~~~l~~~~FgeGit----~~g~~LY~ 164 (346)
+.+++.+++.+..+ .|+.+++|| .||+++. ++.|.+||+. +++++.+++.+..+.+..++ ++|+++|+
T Consensus 186 t~~v~~~i~~g~~p--~~v~~SpDGr~lyv~~~---dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v 260 (567)
T 1qks_A 186 TYEIKTVLDTGYAV--HISRLSASGRYLFVIGR---DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA 260 (567)
T ss_dssp TCCEEEEEECSSCE--EEEEECTTSCEEEEEET---TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred CCeEEEEEeCCCCc--cceEECCCCCEEEEEcC---CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEE
Confidence 45788899986665 699999998 5888753 4699999996 99999999998877666666 46889999
Q ss_pred EEeeCCEEEEEECCCCcEEEEEecC-C-----------------------------------------------------
Q 019103 165 VTWLQKTGFIYDQNNLNKLEEFTHQ-M----------------------------------------------------- 190 (346)
Q Consensus 165 ltw~~~~v~V~D~~tl~~i~ti~~~-~----------------------------------------------------- 190 (346)
+++..+.+.|+|..|++++++++++ +
T Consensus 261 ~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~ 340 (567)
T 1qks_A 261 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA 340 (567)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred EEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec
Confidence 9999999999999999999998753 1
Q ss_pred ---CceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEe-ccCCeeeeeceeeEeeCCEEEEEe-cCCCeEEEEeCC
Q 019103 191 ---KDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIV-RYKGREVRNLNELEFIKGEVWANV-WQTDCIARISHE 264 (346)
Q Consensus 191 ---peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V-~~~G~pv~~lNELE~~~G~LyaNv-~~sn~I~vID~~ 264 (346)
+.+.++++||+++|+++ ++++|.+||++|+++++++.| +...+|-.-.|-.....|.+|++. ..++.|++||++
T Consensus 341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 11447889999999987 799999999999999999999 654333222331112247899865 456899999999
Q ss_pred C-------CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC------cEEEEEEeec
Q 019103 265 D-------GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP------KLYEINLREM 322 (346)
Q Consensus 265 T-------G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp------~l~ev~l~~~ 322 (346)
+ .+|+.+|+..+ .-...|+.+|+++++||+..+-| +|..+++...
T Consensus 421 ~~~~~~~~~kvv~~i~~~g-------------~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 421 PEGHPDNAWKILDSFPALG-------------GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTTCTTTBTSEEEEEECSC-------------SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCccccCEEEEEEecCC-------------CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 9 78999998732 12355889999999999986544 7777776543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-18 Score=169.40 Aligned_cols=211 Identities=10% Similarity=0.011 Sum_probs=152.0
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCC-----C--CCCeEEEEECCCCcEEEEeccCC--------CeeEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGL-----Y--GRSSVRRVALETGKVEAINQMEG--------SYFGEGL 155 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGl-----y--g~s~V~~iDl~Tgkv~~~~~l~~--------~~FgeGi 155 (346)
+.+++.++|.+..| +++++||| +||+++.. + ..+.|++||++|++++++++++. .+++..+
T Consensus 68 t~~v~~~I~vG~~P---~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP---NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp TTEEEEEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CCeEEEEEECCCCC---cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence 68899999998887 59999999 59998731 1 24689999999999999998864 6777778
Q ss_pred EEeCCEEEEEEee-CCEEEEEECCCCcEEEEEecCC-----Cce----eEEeeCCCEEEEECCC-CeE-----EEEeCCC
Q 019103 156 TLLGEKLFQVTWL-QKTGFIYDQNNLNKLEEFTHQM-----KDG----WGLATDGKVLFGSDGS-SML-----YQIDPQT 219 (346)
Q Consensus 156 t~~g~~LY~ltw~-~~~v~V~D~~tl~~i~ti~~~~-----peG----wGLt~Dg~~LyvSdGs-~~l-----~vIDp~T 219 (346)
+.+|++||+++.. ++.|.|+|+++++++++|+++. |+| +.+++||+++|++.++ +++ .++|+.+
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~ 224 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED 224 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc
Confidence 8899999999975 8999999999999999998741 333 3577888888886653 454 2333332
Q ss_pred -------------Cc---------------------EEEEEEecc-----CC-eeee-eceeeEeeCCEEEEEec-----
Q 019103 220 -------------LK---------------------VIRKDIVRY-----KG-REVR-NLNELEFIKGEVWANVW----- 253 (346)
Q Consensus 220 -------------~k---------------------vi~~I~V~~-----~G-~pv~-~lNELE~~~G~LyaNv~----- 253 (346)
++ +++++.+.. .| +|-. ++..+....+++|+..-
T Consensus 225 ~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 225 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred ccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 11 111111000 00 0000 00011122469998653
Q ss_pred ----CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC-EEEEecCCCCcEEEEEE
Q 019103 254 ----QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN-RIFVTGKLWPKLYEINL 319 (346)
Q Consensus 254 ----~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~LfVTGK~Wp~l~ev~l 319 (346)
..++|++||++|++|+.+|++. .-++|||+++|++ +||+|+...+.|+-|..
T Consensus 305 ~hk~~~~~V~viD~~t~kv~~~i~vg--------------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERLAKFEMG--------------HEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEE--------------EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred ccCCCCCEEEEEECCCCeEEEEEECC--------------CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 2478999999999999999772 2478999999997 99999888899998876
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-18 Score=163.24 Aligned_cols=187 Identities=12% Similarity=0.137 Sum_probs=143.5
Q ss_pred CEEEEEcCCC---CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe---------eCCEEEEEECCCCcEE
Q 019103 116 DTLFESTGLY---GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLNKL 183 (346)
Q Consensus 116 ~~LyeStGly---g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw---------~~~~v~V~D~~tl~~i 183 (346)
.++|+++... .++.|.+||+++++++.+++.+..+ +..++.++++||++++ .++.|.+||+++++++
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~ 94 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE 94 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE
Confidence 3789887522 2459999999999999998887766 5555557899999986 3677999999999999
Q ss_pred EEEecC--------CCceeEEeeCCCEEEEEC-C-CCeEEEEeCCCCcEEEE-EEecc----------------------
Q 019103 184 EEFTHQ--------MKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRK-DIVRY---------------------- 230 (346)
Q Consensus 184 ~ti~~~--------~peGwGLt~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~-I~V~~---------------------- 230 (346)
++++.+ .|.+..+++||++||++| + +++|.+||+++.+++++ |.++.
T Consensus 95 ~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~ 174 (361)
T 2oiz_A 95 KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGG 174 (361)
T ss_dssp EEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSS
T ss_pred EEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCc
Confidence 999852 478899999999999998 4 78999999999999888 44311
Q ss_pred --------CCeee------------------------------------eece---------------------------
Q 019103 231 --------KGREV------------------------------------RNLN--------------------------- 239 (346)
Q Consensus 231 --------~G~pv------------------------------------~~lN--------------------------- 239 (346)
.|+.. ..++
T Consensus 175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence 01111 0000
Q ss_pred ---eeEee--CCEEEEEec----------CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEE
Q 019103 240 ---ELEFI--KGEVWANVW----------QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRI 304 (346)
Q Consensus 240 ---ELE~~--~G~LyaNv~----------~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~L 304 (346)
.+.+. ++++||.+. .+++|.+||++|++++++|++. . ++|||++|++++|
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~--------------~-p~~ia~spdg~~l 319 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR--------------D-ALSMTIDQQRNLM 319 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT--------------T-CCEEEEETTTTEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC--------------C-eeEEEECCCCCEE
Confidence 01111 368998764 2568999999999999999661 2 7999999999999
Q ss_pred EEecCCCCcEEEEEEe
Q 019103 305 FVTGKLWPKLYEINLR 320 (346)
Q Consensus 305 fVTGK~Wp~l~ev~l~ 320 (346)
|+++. +.|+.+.+.
T Consensus 320 ~v~n~--~~v~v~D~~ 333 (361)
T 2oiz_A 320 LTLDG--GNVNVYDIS 333 (361)
T ss_dssp EEECS--SCEEEEECS
T ss_pred EEeCC--CeEEEEECC
Confidence 99984 999988653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-18 Score=161.59 Aligned_cols=186 Identities=9% Similarity=-0.033 Sum_probs=143.3
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCC-----C--CCCeEEEEECCCCcEEEEeccCC-------CeeEEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGL-----Y--GRSSVRRVALETGKVEAINQMEG-------SYFGEGLT 156 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGl-----y--g~s~V~~iDl~Tgkv~~~~~l~~-------~~FgeGit 156 (346)
+-+++.++|.+..| ++++++|| +||+++.. . .++.|.+||++++++++++++++ .+.+..++
T Consensus 40 t~~~~~~i~~g~~p---~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s 116 (361)
T 2oiz_A 40 NGKFLGMVPTAFNG---HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT 116 (361)
T ss_dssp TCCEEEEEECCEEE---EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC
T ss_pred CCeEEEEecCCCCC---ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC
Confidence 34567888876544 99999998 69998621 1 24679999999999999998753 34455556
Q ss_pred EeCCEEEEEEee-CCEEEEEECCCCcEEEE-EecCC--------------------------------------------
Q 019103 157 LLGEKLFQVTWL-QKTGFIYDQNNLNKLEE-FTHQM-------------------------------------------- 190 (346)
Q Consensus 157 ~~g~~LY~ltw~-~~~v~V~D~~tl~~i~t-i~~~~-------------------------------------------- 190 (346)
.+|++||++++. ++.+.|||.++++++++ ++++.
T Consensus 117 pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~ 196 (361)
T 2oiz_A 117 TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMF 196 (361)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCS
T ss_pred CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceE
Confidence 678999999986 79999999999888877 33210
Q ss_pred --------------------------------------------------------Cce---eEEeeCCCEEEEECC---
Q 019103 191 --------------------------------------------------------KDG---WGLATDGKVLFGSDG--- 208 (346)
Q Consensus 191 --------------------------------------------------------peG---wGLt~Dg~~LyvSdG--- 208 (346)
|.| .++++|++++|+++.
T Consensus 197 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~ 276 (361)
T 2oiz_A 197 SVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDG 276 (361)
T ss_dssp CTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSC
T ss_pred cCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCC
Confidence 112 466788999999742
Q ss_pred --------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCC--eEEEEEECCc
Q 019103 209 --------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDG--VVLGWVLLPN 276 (346)
Q Consensus 209 --------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG--~Vv~~I~l~~ 276 (346)
+++|++||++|++++++++++. |. .+.+. +.+||++++ ++|.+||++|| +++++|.-
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~----~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~-- 345 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQRVARIPGRD---AL----SMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEG-- 345 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEEEEEEECTT---CC----EEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETT--
T ss_pred CcccccCCCceEEEEECCCCcEEEEEecCC---ee----EEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEecc--
Confidence 5699999999999999999965 32 35554 458999986 99999999999 99999821
Q ss_pred hhhhhhhccCCCCceeeEEEEeCCCC
Q 019103 277 LRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 277 l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
.+..|++|+++|+|+
T Consensus 346 -----------~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 346 -----------AAEASLQVQFHPVGG 360 (361)
T ss_dssp -----------SCSSEEEEEECCCSC
T ss_pred -----------CCCCcEEEEecCCCC
Confidence 234789999999986
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=170.51 Aligned_cols=186 Identities=5% Similarity=-0.171 Sum_probs=142.2
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCC-----C--CCCeEEEEECCCCcEEEEeccC--------CCeeEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGL-----Y--GRSSVRRVALETGKVEAINQME--------GSYFGEGL 155 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGl-----y--g~s~V~~iDl~Tgkv~~~~~l~--------~~~FgeGi 155 (346)
+.+++.++|.+..| |+.+++|+ +||+++.. + ..+.|.+||+.|++++++++++ ..|.+..+
T Consensus 55 t~~v~~~i~vG~~P---~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~ 131 (368)
T 1mda_H 55 CGVTLGHSLGAFLS---LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131 (368)
T ss_dssp TTEEEEEEEECTTC---EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred CCeEEEEEeCCCCC---ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEE
Confidence 78999999998777 99999998 69999721 1 2579999999999999999887 34556667
Q ss_pred EEeCCEEEEEEee-CCEEEE--EECCCCcEE-------------------------------------------------
Q 019103 156 TLLGEKLFQVTWL-QKTGFI--YDQNNLNKL------------------------------------------------- 183 (346)
Q Consensus 156 t~~g~~LY~ltw~-~~~v~V--~D~~tl~~i------------------------------------------------- 183 (346)
+++|++||++++. ++.+.| +|+++.+.+
T Consensus 132 SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~ 211 (368)
T 1mda_H 132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211 (368)
T ss_dssp CTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred cCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeee
Confidence 7788999999987 688888 887551111
Q ss_pred -----------------------------------EEEec--------C-CCce---eEEeeCCCEEEEEC----C----
Q 019103 184 -----------------------------------EEFTH--------Q-MKDG---WGLATDGKVLFGSD----G---- 208 (346)
Q Consensus 184 -----------------------------------~ti~~--------~-~peG---wGLt~Dg~~LyvSd----G---- 208 (346)
++++. + .|.| .++++||++||+++ +
T Consensus 212 vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~ 291 (368)
T 1mda_H 212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA 291 (368)
T ss_dssp BCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred CCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccc
Confidence 00000 0 1233 56899999999974 4
Q ss_pred -CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEec-CCCeEEEEeCCCCeEEEEEECCchhhhhhhc
Q 019103 209 -SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVW-QTDCIARISHEDGVVLGWVLLPNLRERLVAA 284 (346)
Q Consensus 209 -s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~-~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~ 284 (346)
++.+.+||++|++++++|+++. .|.. |.+. || ++|++++ .+|+|+|||++|++++++|++.
T Consensus 292 ~~~~~~ViD~~t~~vv~~i~vg~--~p~g----i~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg--------- 356 (368)
T 1mda_H 292 AAENTSSVTASVGQTSGPISNGH--DSDA----IIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--------- 356 (368)
T ss_dssp CEEEEEEEESSSCCEEECCEEEE--EECE----EEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC---------
T ss_pred cCCCEEEEECCCCeEEEEEECCC--Ccce----EEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC---------
Confidence 4678899999999999999976 3433 6555 45 5887666 7999999999999999999662
Q ss_pred cCCCCceeeEEEEeCC
Q 019103 285 GYNGIDVLNGIAWDSN 300 (346)
Q Consensus 285 ~~~~~~vlNGIA~d~~ 300 (346)
..|.||++.++
T Consensus 357 -----~~P~~i~~~~~ 367 (368)
T 1mda_H 357 -----KGPESLSVQNE 367 (368)
T ss_dssp -----SCCCEEECCCC
T ss_pred -----CCCCEEEeecC
Confidence 25789998754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-17 Score=154.13 Aligned_cols=163 Identities=16% Similarity=0.118 Sum_probs=139.3
Q ss_pred cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEe
Q 019103 139 KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQID 216 (346)
Q Consensus 139 kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vID 216 (346)
++++.++.+...|.+|+..++++||.++-..+.+.++|++|+++++++ .+ ..-|-|++.++++||+++ .++.++++|
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 789999999999999999999999999999999999999999999999 75 345677999999999988 599999999
Q ss_pred CCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEE
Q 019103 217 PQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIA 296 (346)
Q Consensus 217 p~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA 296 (346)
++|++++++|++...| .. |.+++++||+++ .++.|.+|||+|++++++|.+.. .+. ....+|++.
T Consensus 123 ~~Tl~~~~ti~~~~eG--wG----Lt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~-~g~-------~v~~lNeLe 187 (268)
T 3nok_A 123 GMPPQRERTTRYSGEG--WG----LCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKL-RGQ-------PVELINELE 187 (268)
T ss_dssp TTTTEEEEEEECSSCC--CC----EEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEE-TTE-------ECCCEEEEE
T ss_pred CCcCcEEEEEeCCCce--eE----EecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCC-CCc-------ccccccccE
Confidence 9999999999996443 33 667788999998 59999999999999999998832 211 133679999
Q ss_pred EeCCCCEEEEecCCCCcEEEEEE
Q 019103 297 WDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 297 ~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
|. +| +||++.-.-+.|..|..
T Consensus 188 ~~-dG-~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 188 CA-NG-VIYANIWHSSDVLEIDP 208 (268)
T ss_dssp EE-TT-EEEEEETTCSEEEEECT
T ss_pred Ee-CC-EEEEEECCCCeEEEEeC
Confidence 98 44 89999767788888854
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-16 Score=162.09 Aligned_cols=212 Identities=11% Similarity=0.038 Sum_probs=162.2
Q ss_pred eeEEEEEEecCCCCcceeEEEec----CC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCC----------CeeEEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAE----ND-TLFESTGLYGRSSVRRVALETGKVEAINQMEG----------SYFGEGLT 156 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~----d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~----------~~FgeGit 156 (346)
+.+++.+++++..+ .+++|+| || .||+++- .+++|.+||.+|+++++.+.... .+...++.
T Consensus 211 t~~~~~~i~~g~~p--~~va~sp~~~~dg~~l~v~~~--~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 211 EPTKVAEIKIGIEA--RSVESSKFKGYEDRYTIAGAY--WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp SCEEEEEEECCSEE--EEEEECCSTTCTTTEEEEEEE--ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred CCcEEEEEecCCCc--ceEEeCCCcCCCCCEEEEEEc--cCCeEEEEeccccccceeecccCcccCccccccCCceEEEE
Confidence 45788999986666 7999999 88 5888764 56799999999999999987632 22233444
Q ss_pred E--eCCEEEEEEeeCCEEEEEECCCCcEEE--EEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEecc
Q 019103 157 L--LGEKLFQVTWLQKTGFIYDQNNLNKLE--EFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 157 ~--~g~~LY~ltw~~~~v~V~D~~tl~~i~--ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
. +++++|+....++.+.++|..+.+.+. +++.+ .+.+.+++|||+++|+++ ++++|.++|++|+++++++.++.
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 4 478899999999999999999876655 77764 578889999999999976 69999999999999999999975
Q ss_pred CCeeeeeceeeEeeCCEEEEEec-CCCeEEEEeCCC-------CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019103 231 KGREVRNLNELEFIKGEVWANVW-QTDCIARISHED-------GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 231 ~G~pv~~lNELE~~~G~LyaNv~-~sn~I~vID~~T-------G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
..+|-.-.|-....+|.+||+.. .+++|.+||+++ ++++.++...+ .....|+++|+++
T Consensus 367 ~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g-------------~~~~~v~~~pdg~ 433 (543)
T 1nir_A 367 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG-------------GGSLFIKTHPKSS 433 (543)
T ss_dssp SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-------------SCCCCEECCTTCC
T ss_pred CCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC-------------CCceEEEcCCCCC
Confidence 33332122211122478999875 578999999999 99999997632 1235699999999
Q ss_pred EEEEecCC------CCcEEEEEEe
Q 019103 303 RIFVTGKL------WPKLYEINLR 320 (346)
Q Consensus 303 ~LfVTGK~------Wp~l~ev~l~ 320 (346)
+|||+..+ ..+|..+++.
T Consensus 434 ~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 434 HLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EEEECCTTCSSHHHHTCEEEEETT
T ss_pred cEEEecCCCCCcccCceEEEEECC
Confidence 99999743 3366666654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=150.79 Aligned_cols=165 Identities=14% Similarity=0.099 Sum_probs=139.1
Q ss_pred CcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEE
Q 019103 138 GKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLY 213 (346)
Q Consensus 138 gkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~ 213 (346)
-++++.++.++.+|.+|+..++++||.++-..+ .+.++|++|++++++++.+ .+-|-|++.++++||+++ .++.++
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred eEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence 358899999999999999999999999997755 8999999999999999986 445678999999999988 599999
Q ss_pred EEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceee
Q 019103 214 QIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLN 293 (346)
Q Consensus 214 vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlN 293 (346)
++|++|++++++++++..|.. |.+++++||+++. ++.|.+|||+|++++++|.+.. .+ .....||
T Consensus 111 v~D~~t~~~~~ti~~~~eG~g------lt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~-~g-------~~~~~lN 175 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDGEGWG------LTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTA-HG-------EELPELN 175 (262)
T ss_dssp EEETTTCCEEEEEECSSCCCC------EEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEE-TT-------EECCCEE
T ss_pred EEECccCcEEEEEECCCCceE------EecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEecc-CC-------ccccccc
Confidence 999999999999999654433 5566789999985 8999999999999999998832 11 0124688
Q ss_pred EEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 294 GIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 294 GIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.+.|. + +++|+..-.-+.|+.|..
T Consensus 176 ELe~~-~-G~lyan~w~~~~I~vIDp 199 (262)
T 3nol_A 176 ELEWV-D-GEIFANVWQTNKIVRIDP 199 (262)
T ss_dssp EEEEE-T-TEEEEEETTSSEEEEECT
T ss_pred eeEEE-C-CEEEEEEccCCeEEEEEC
Confidence 99997 3 589999877788988854
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-15 Score=143.09 Aligned_cols=203 Identities=15% Similarity=0.174 Sum_probs=163.4
Q ss_pred eEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
-+++.++++... ..++.+++++. ||++.. .+..|.+||+.+++.+..+..+..+.+..+..+++.||++...++.
T Consensus 64 ~~~~~~~~~~~~--v~~~~~spdg~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 64 NNVIATVPAGSS--PQGVAVSPDGKQVYVTNM--ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp TEEEEEEECSSS--EEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CeEEEEEECCCC--ccceEECCCCCEEEEEEC--CCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCE
Confidence 456778877553 47999999884 777765 4569999999999999888877776555555567889999999999
Q ss_pred EEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCE
Q 019103 172 GFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGE 247 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~ 247 (346)
+.++|..+.+.+..++.+ .+.+..+++||++||++. +++.|+++|+++.+.+..+.... .+ +.+.+. +.+
T Consensus 140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~----~~~~~~~~g~~ 213 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA--AP----SGIAVNPEGTK 213 (391)
T ss_dssp EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--EE----EEEEECTTSSE
T ss_pred EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC--Cc----cceEECCCCCE
Confidence 999999999999999875 457777889999999876 57899999999999888877633 22 234444 347
Q ss_pred EEEEec--CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 248 VWANVW--QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 248 LyaNv~--~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
||+... ..+.|.++|+++++++..+... ..+++++++|+++++|+++...+.++...+
T Consensus 214 l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 214 AYVTNVDKYFNTVSMIDTGTNKITARIPVG--------------PDPAGIAVTPDGKKVYVALSFXNTVSVIDT 273 (391)
T ss_dssp EEEEEECSSCCEEEEEETTTTEEEEEEECC--------------SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEEEecCcCCCcEEEEECCCCeEEEEEecC--------------CCccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence 998876 6889999999999999888551 136889999999999999988888887765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.7e-16 Score=143.73 Aligned_cols=203 Identities=17% Similarity=0.212 Sum_probs=163.4
Q ss_pred eEEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
-+++.++++...+ .++.+++++ .||++.+ .+..|++||+.+++++..+..+..+.+..+..++++||++...++.
T Consensus 22 ~~~~~~~~~~~~~--~~~~~s~dg~~l~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~ 97 (391)
T 1l0q_A 22 NKVTATIPVGSNP--MGAVISPDGTKVYVANA--HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASST 97 (391)
T ss_dssp TEEEEEEECSSSE--EEEEECTTSSEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CeEEEEeecCCCc--ceEEECCCCCEEEEECC--CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCE
Confidence 4667778775554 799999998 4778876 4569999999999999999888766555555568899999988999
Q ss_pred EEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCE
Q 019103 172 GFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGE 247 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~ 247 (346)
+.++|.++.+.+..+..+ .+.+..+++||+.||++. +++.|+++|.++.+.+..+..+.. + +.+.+. +.+
T Consensus 98 v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~----~~~~~~~dg~~ 171 (391)
T 1l0q_A 98 LSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS--P----KGIAVTPDGTK 171 (391)
T ss_dssp EEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS--E----EEEEECTTSSE
T ss_pred EEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC--c----ceEEECCCCCE
Confidence 999999999999999875 456677889999998876 588999999999999988877542 2 335554 347
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC--CCCcEEEEEE
Q 019103 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK--LWPKLYEINL 319 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK--~Wp~l~ev~l 319 (346)
||+.....+.|.++|+++++++..+... ..+++++++|+++++|+++. ....++...+
T Consensus 172 l~~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 172 VYVANFDSMSISVIDTVTNSVIDTVKVE--------------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECS--------------SEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEecC--------------CCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 9998888899999999999998888541 25689999999999999985 5566666654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-16 Score=146.86 Aligned_cols=214 Identities=9% Similarity=0.043 Sum_probs=155.7
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc-EEEEecc--------CCCeeEEEEEEe--CCEEE
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQM--------EGSYFGEGLTLL--GEKLF 163 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l--------~~~~FgeGit~~--g~~LY 163 (346)
++..+....-....|++++++|.||++.. +..+|.+||++... .+..+.- ..-..+.|++++ ++.||
T Consensus 81 ~~~~~~~~~~~~p~gia~d~~g~l~v~d~--~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ly 158 (329)
T 3fvz_A 81 ILQSSGKNLFYLPHGLSIDTDGNYWVTDV--ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVF 158 (329)
T ss_dssp EEEEECTTTCSSEEEEEECTTSCEEEEET--TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEE
T ss_pred EEeccCCCccCCceEEEECCCCCEEEEEC--CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEE
Confidence 44444433333457999999999999976 66799999987552 3333321 111235678886 58999
Q ss_pred EEEe-eCCEEEEEECCCCcEEEEEecC------------CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEec
Q 019103 164 QVTW-LQKTGFIYDQNNLNKLEEFTHQ------------MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 164 ~ltw-~~~~v~V~D~~tl~~i~ti~~~------------~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~ 229 (346)
+++. .++.|.+|| .+++.+.++... .|.|..+++|++.||++| +.++|.++|+++++.++++...
T Consensus 159 v~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 159 VSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 9995 799999999 677888877421 267777888889999999 6889999999999999888765
Q ss_pred cCCe-eee---eceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019103 230 YKGR-EVR---NLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 230 ~~G~-pv~---~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
..|. +.. ....+-..+|.+|++....+.|.++|+.+|+++.++.... .....|+|||++|++ .+|
T Consensus 238 ~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~----------~~~~~p~~ia~~~dG-~ly 306 (329)
T 3fvz_A 238 SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR----------KHFDMPHDIVASEDG-TVY 306 (329)
T ss_dssp TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS----------SCCSSEEEEEECTTS-EEE
T ss_pred ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC----------CccCCeeEEEECCCC-CEE
Confidence 4332 221 0011222256666666667799999999999999884210 123478999999998 999
Q ss_pred EecCCCCcEEEEEEeec
Q 019103 306 VTGKLWPKLYEINLREM 322 (346)
Q Consensus 306 VTGK~Wp~l~ev~l~~~ 322 (346)
|++..-.+|+.+++...
T Consensus 307 vad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 307 IGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEESSSCCEEEEEEEEC
T ss_pred EEECCCCEEEEEeCCcc
Confidence 99999999999998753
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-18 Score=174.54 Aligned_cols=207 Identities=13% Similarity=0.131 Sum_probs=166.6
Q ss_pred eeEEEE--EEecCCCCcceeEEE-e-cCC-EEEEEcC---------------CCCCCeEEEEECCCCcEEEEeccCCCee
Q 019103 92 TIQVVN--EFPHDPRAFTQGLLY-A-END-TLFESTG---------------LYGRSSVRRVALETGKVEAINQMEGSYF 151 (346)
Q Consensus 92 t~~Vv~--t~phd~~~FTqGL~~-~-~d~-~LyeStG---------------lyg~s~V~~iDl~Tgkv~~~~~l~~~~F 151 (346)
++++++ ++|....+ .|+.+ + ||+ .+|+++- ....+.|.+||.+|+++..++.++.++-
T Consensus 121 t~~~~~ii~ip~g~~p--hg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd 198 (595)
T 1fwx_A 121 VMKCDAILEIPNAKGI--HGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLD 198 (595)
T ss_dssp TTEEEEEEECSSCCSE--EEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCC
T ss_pred CceEeeEEeCCCCCCC--cceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCcc
Confidence 556566 67776666 79998 4 666 6888841 1234699999999999999999988876
Q ss_pred EEEEEEeCCEEEEEEeeC-------------------------------------CEEEEEECCC--CcE-EEEEecC-C
Q 019103 152 GEGLTLLGEKLFQVTWLQ-------------------------------------KTGFIYDQNN--LNK-LEEFTHQ-M 190 (346)
Q Consensus 152 geGit~~g~~LY~ltw~~-------------------------------------~~v~V~D~~t--l~~-i~ti~~~-~ 190 (346)
+..++.+|+.+|+++..+ +.|.|+|.++ .++ +++|+++ .
T Consensus 199 ~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~ 278 (595)
T 1fwx_A 199 NCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANN 278 (595)
T ss_dssp CEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESS
T ss_pred ceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCC
Confidence 666666899999998665 3499999999 667 8899986 7
Q ss_pred CceeEEeeCCCEEEEEC-CCCeEEEEeCCCCc------------EEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCC
Q 019103 191 KDGWGLATDGKVLFGSD-GSSMLYQIDPQTLK------------VIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTD 256 (346)
Q Consensus 191 peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~k------------vi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn 256 (346)
|+|..++|||+++|++| ++++|++||.++++ +++++++|. .|.+ +.|. +|++|++++.++
T Consensus 279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~--gP~h----~aF~~dG~aY~t~~lds 352 (595)
T 1fwx_A 279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL--GPLH----TAFDGRGNAYTSLFLDS 352 (595)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS--CEEE----EEECTTSEEEEEETTTT
T ss_pred ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC--Ccce----EEECCCCeEEEEEecCC
Confidence 99999999999999999 69999999999874 788888876 4766 6676 579999999999
Q ss_pred eEEEEeCCC----------CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC-CcE
Q 019103 257 CIARISHED----------GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW-PKL 314 (346)
Q Consensus 257 ~I~vID~~T----------G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W-p~l 314 (346)
.|+++|.++ .+|+.++++. ..+.. .....|++.+|||+.||+++|.. +++
T Consensus 353 qV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqpGh-------~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 353 QVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPGH-------LKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEEE-------EEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred cEEEEEhhHhhhhhcccccceeEEEeecc-ccccc-------ceeccceEeCCCCCEEEEcCCCCcccc
Confidence 999999998 7899999882 22110 22346788899999999999998 444
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=163.84 Aligned_cols=192 Identities=13% Similarity=0.029 Sum_probs=153.9
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECC--CCcEEEEEec
Q 019103 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQN--NLNKLEEFTH 188 (346)
Q Consensus 111 ~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~--tl~~i~ti~~ 188 (346)
..++++.+|++.. ++++|.+||++|++++.+++.+..+.+..++.+++++|+++ .++.+.+||+. +++++++++.
T Consensus 162 ~~d~~~~~~V~~~--~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~-~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 162 DWDLENLFSVTLR--DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp CCCGGGEEEEEET--TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCCEEEEEEC
T ss_pred ccCCCceEEEEeC--CCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEc-CCCeEEEEECCCCCCcEeEEEec
Confidence 3556668999987 77899999999999999999988776655556789999987 47899999996 9999999998
Q ss_pred C-CCceeEEe----eCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEecc---CC---eeeeeceeeEee--CCEEEEEecC
Q 019103 189 Q-MKDGWGLA----TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY---KG---REVRNLNELEFI--KGEVWANVWQ 254 (346)
Q Consensus 189 ~-~peGwGLt----~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~---~G---~pv~~lNELE~~--~G~LyaNv~~ 254 (346)
+ .|.+.+++ |||++||++| .+++|.+||++|++++++|.++. ++ .|-..+..+-.. +.+.++|+..
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 6 57888999 6999999998 58999999999999999999853 11 111112222222 3578899999
Q ss_pred CCeEEEEeCCCCeEE--EEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 255 TDCIARISHEDGVVL--GWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 255 sn~I~vID~~TG~Vv--~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
++.|.+||..+.+.+ ..|.. +..|.+++|+|++++|||++...++|..|++
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~~--------------~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~ 371 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEISA--------------ERFLHDGGLDGSHRYFITAANARNKLVVIDT 371 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEEC--------------CSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred CCeEEEEecCCCccceeeeeec--------------cccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence 999999999987533 33322 2368899999999999999999999998875
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=162.91 Aligned_cols=192 Identities=12% Similarity=0.024 Sum_probs=156.5
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEEC--CCCcEEEEEec
Q 019103 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ--NNLNKLEEFTH 188 (346)
Q Consensus 111 ~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~--~tl~~i~ti~~ 188 (346)
.+++++++|+++. +++.|.+||.++++++..++.+..+++..+++++++||+++.. +.|.+||. ++++.+++++.
T Consensus 144 ~~~p~~~~~vs~~--~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLR--DAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCCGGGEEEEEEG--GGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEEC
T ss_pred ccCCCCEEEEEEc--CCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEec
Confidence 4788899999977 6779999999999999999987777666666688999999976 99999999 89999999998
Q ss_pred C-CCceeEEee----CCCEEEEEC-CCCeEEEEeCCCCcEEEEEEecc---CCe---eeeeceeeEee--CCEEEEEecC
Q 019103 189 Q-MKDGWGLAT----DGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY---KGR---EVRNLNELEFI--KGEVWANVWQ 254 (346)
Q Consensus 189 ~-~peGwGLt~----Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~---~G~---pv~~lNELE~~--~G~LyaNv~~ 254 (346)
+ .|.+..+++ ||++||+++ .+++|.++|.+|+++++++.+.. ++. +-..+..+.+. ++++|+++..
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 6 467888999 999999998 58999999999999999998842 110 11122233333 5689999999
Q ss_pred CCeEEEEeCCCCeEEE--EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 255 TDCIARISHEDGVVLG--WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~--~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
++.|.+||..+++.+. ++.. +..|.+++|+|++++||+++...++|..+.+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~~--------------~~~~~~~~~spdg~~l~va~~~~~~v~v~D~ 353 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIGA--------------APFLHDGGWDSSHRYFMTAANNSNKVAVIDS 353 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEEC--------------CSSCCCEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred CCeEEEEEecCCCcceeEEecc--------------CcCccCceECCCCCEEEEEecCCCeEEEEEC
Confidence 9999999999987554 4432 2357889999999999999988888887765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-16 Score=141.92 Aligned_cols=205 Identities=17% Similarity=0.166 Sum_probs=152.3
Q ss_pred eeEEEEEEecCCCC-cceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCC------CeeEEEEEEeCCEEE
Q 019103 92 TIQVVNEFPHDPRA-FTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEG------SYFGEGLTLLGEKLF 163 (346)
Q Consensus 92 t~~Vv~t~phd~~~-FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~------~~FgeGit~~g~~LY 163 (346)
+-+++.+++++... ...++.+++|| .+|+++. +...|.+||+.+++++..+.++. .+.+..++.++++||
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 97 (337)
T 1pby_B 20 KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC--CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEE
Confidence 35678888876521 13699999998 6888876 55799999999999998888754 555555555678999
Q ss_pred EEE--------e---eCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC
Q 019103 164 QVT--------W---LQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 164 ~lt--------w---~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
++. | .++.+.++|.++++.+..++.+ .+.+..+++||++||++ ++.|+++|+++++++..+..+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~ 175 (337)
T 1pby_B 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred EEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence 985 2 3699999999999999999875 56888899999999999 47899999999999988887652
Q ss_pred CeeeeeceeeEeeCCEEEEEecCCC-----------------------eEEEEeCCCCeEEEEEECCchhhhhhhccCCC
Q 019103 232 GREVRNLNELEFIKGEVWANVWQTD-----------------------CIARISHEDGVVLGWVLLPNLRERLVAAGYNG 288 (346)
Q Consensus 232 G~pv~~lNELE~~~G~LyaNv~~sn-----------------------~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~ 288 (346)
..++. +...+.++|+.....+ .|.++|++++++. .+.+.. .
T Consensus 176 ~~~~~----~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~-----------~ 239 (337)
T 1pby_B 176 EAETY----AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI-----------M 239 (337)
T ss_dssp TTTTB----CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE-----------C
T ss_pred CCCce----eCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC-----------C
Confidence 22321 2222233444332222 5899999999987 665411 1
Q ss_pred CceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 289 IDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 289 ~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
...+++++++|+++++|++ -+.|+.+.+
T Consensus 240 ~~~~~~~~~s~dg~~l~~~---~~~v~~~d~ 267 (337)
T 1pby_B 240 DVFYFSTAVNPAKTRAFGA---YNVLESFDL 267 (337)
T ss_dssp SSCEEEEEECTTSSEEEEE---ESEEEEEET
T ss_pred CCceeeEEECCCCCEEEEe---CCeEEEEEC
Confidence 2367899999999999998 367776654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-16 Score=143.53 Aligned_cols=205 Identities=11% Similarity=0.071 Sum_probs=151.3
Q ss_pred eEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcE-EEEeccCCCeeE-EEEEEeCCEEEEEEeeC
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKV-EAINQMEGSYFG-EGLTLLGEKLFQVTWLQ 169 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv-~~~~~l~~~~Fg-eGit~~g~~LY~ltw~~ 169 (346)
-+++.+++....+ . ++++++||+ ||+++. +...|.+||++++++ ...+..+..+.. ..++.+++.||+..+.+
T Consensus 30 ~~~~~~~~~~~~~-~-~~~~s~dg~~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 105 (331)
T 3u4y_A 30 LEILNQITLGYDF-V-DTAITSDCSNVVVTSD--FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLN 105 (331)
T ss_dssp CCEEEEEECCCCE-E-EEEECSSSCEEEEEES--TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSS
T ss_pred cceeeeEEccCCc-c-eEEEcCCCCEEEEEeC--CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCC
Confidence 3456666654333 2 999999985 888876 567999999999998 777766665544 55666788999555554
Q ss_pred C--EEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCe-EEEEeCCCCc-EEEE--EEeccCCeeeeeceee
Q 019103 170 K--TGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSM-LYQIDPQTLK-VIRK--DIVRYKGREVRNLNEL 241 (346)
Q Consensus 170 ~--~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~-l~vIDp~T~k-vi~~--I~V~~~G~pv~~lNEL 241 (346)
+ .+.++|.++.+.+.+++.+ .+.+..++|||++||+++ +++. |.++|..... +... ..+.....| ..+
T Consensus 106 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~----~~~ 181 (331)
T 3u4y_A 106 HPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRP----FNI 181 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSE----EEE
T ss_pred CcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCc----cce
Confidence 5 9999999999999999875 567888999999999987 4567 8877755422 2111 111111123 335
Q ss_pred Eee-CC-EEEEEecCCCeEEEEeCCCCeE---EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 242 EFI-KG-EVWANVWQTDCIARISHEDGVV---LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 242 E~~-~G-~LyaNv~~sn~I~vID~~TG~V---v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
.+. +| ++|+..+..+.|.++|++++++ +..++.. ..+.+++++|+++.+|+++..-+.|+.
T Consensus 182 ~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--------------~~~~~~~~spdg~~l~v~~~~~~~i~~ 247 (331)
T 3u4y_A 182 TFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--------------NLPGTIVVSRDGSTVYVLTESTVDVFN 247 (331)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--------------SCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--------------CCCceEEECCCCCEEEEEEcCCCEEEE
Confidence 554 45 6999999999999999999998 7777541 246899999999999999987777777
Q ss_pred EEE
Q 019103 317 INL 319 (346)
Q Consensus 317 v~l 319 (346)
+.+
T Consensus 248 ~d~ 250 (331)
T 3u4y_A 248 FNQ 250 (331)
T ss_dssp EET
T ss_pred EEC
Confidence 665
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-16 Score=143.36 Aligned_cols=164 Identities=17% Similarity=0.124 Sum_probs=138.8
Q ss_pred cEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEE
Q 019103 139 KVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQ 214 (346)
Q Consensus 139 kv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~v 214 (346)
+++++++.++..|-+|+..++++||.++-. +..+.++|++|++++++++.+ .+-|-|++.++++||+.+ .++.+++
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 688999999999999999999999999877 469999999999999999986 567788999999999988 5999999
Q ss_pred EeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeE
Q 019103 215 IDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNG 294 (346)
Q Consensus 215 IDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNG 294 (346)
+|++|++++++++.+..|- . |...+++||+++. ++.|.+|||+|.+++++|.+.. .+. ....+|.
T Consensus 90 ~D~~tl~~~~ti~~~~~Gw--g----lt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~-~g~-------~~~~lNe 154 (243)
T 3mbr_X 90 YDLATLTPRARFRYPGEGW--A----LTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTA-GGR-------PLDNLNE 154 (243)
T ss_dssp EETTTTEEEEEEECSSCCC--E----EEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEE-TTE-------ECCCEEE
T ss_pred EECCcCcEEEEEeCCCCce--E----EeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEcc-CCc-------cccccee
Confidence 9999999999999975443 3 5566789999995 9999999999999999998832 211 1236799
Q ss_pred EEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 295 IAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 295 IA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+.+. ++++|+..-.-+.|..|..
T Consensus 155 Le~~--~G~lyanvw~s~~I~vIDp 177 (243)
T 3mbr_X 155 LEWV--NGELLANVWLTSRIARIDP 177 (243)
T ss_dssp EEEE--TTEEEEEETTTTEEEEECT
T ss_pred eEEe--CCEEEEEECCCCeEEEEEC
Confidence 9987 5579999766788888754
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-15 Score=136.87 Aligned_cols=202 Identities=13% Similarity=0.111 Sum_probs=146.6
Q ss_pred eEEEEEEecCC--CCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-------eeEEEEEEeCCEE
Q 019103 93 IQVVNEFPHDP--RAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGS-------YFGEGLTLLGEKL 162 (346)
Q Consensus 93 ~~Vv~t~phd~--~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-------~FgeGit~~g~~L 162 (346)
-+++++++... .+ .++.+++|| .+|+++. +...|.+||+++++++..+.++.. +.+..++.+|+.|
T Consensus 31 ~~~~~~~~~~~~~~~--~~~~~s~dg~~~~v~~~--~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 106 (349)
T 1jmx_B 31 DTVYKSCVMPDKFGP--GTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEV 106 (349)
T ss_dssp TEEEEEEECSSCCSS--CEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEE
T ss_pred CcEEEEEecCCCCCC--ceeEECCCCCEEEEEeC--CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEE
Confidence 46677787654 44 699999998 5888876 567999999999999988887542 3344455577899
Q ss_pred EEEEee-----------CCEEEEEECCCCc---EEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019103 163 FQVTWL-----------QKTGFIYDQNNLN---KLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 163 Y~ltw~-----------~~~v~V~D~~tl~---~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
|++... .+.++++|.++++ .+..++.+ ...+..+++||+ +|++++ .|+++|+++++++.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 107 YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALP 183 (349)
T ss_dssp EEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEEC
T ss_pred EEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceecccc
Confidence 999855 7899999999844 44455543 346667899999 999753 49999999999998887
Q ss_pred eccCCeeee-------------------ec--------------------------------------------eeeE--
Q 019103 228 VRYKGREVR-------------------NL--------------------------------------------NELE-- 242 (346)
Q Consensus 228 V~~~G~pv~-------------------~l--------------------------------------------NELE-- 242 (346)
.+..+.+.. .+ ..+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 263 (349)
T 1jmx_B 184 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS 263 (349)
T ss_dssp STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEec
Confidence 754221100 00 0011
Q ss_pred e-eCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 243 F-IKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 243 ~-~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
. .+.++|+. .+.|.++|+++++++..++.. ..+.+++++|++++||+++.. +.|+.+++
T Consensus 264 p~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~~~~~~-~~v~v~d~ 323 (349)
T 1jmx_B 264 PKDPNQIYGV---LNRLAKYDLKQRKLIKAANLD--------------HTYYCVAFDKKGDKLYLGGTF-NDLAVFNP 323 (349)
T ss_dssp SSCTTEEEEE---ESEEEEEETTTTEEEEEEECS--------------SCCCEEEECSSSSCEEEESBS-SEEEEEET
T ss_pred CCCCCEEEEE---cCeEEEEECccCeEEEEEcCC--------------CCccceEECCCCCEEEEecCC-CeEEEEec
Confidence 1 23378877 789999999999999998651 135789999999999997654 77776665
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-15 Score=139.00 Aligned_cols=211 Identities=11% Similarity=0.085 Sum_probs=152.3
Q ss_pred EEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE-EE
Q 019103 96 VNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT-GF 173 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~-v~ 173 (346)
+.++++...+. .++.+++||+ ||.+.+..+...|.+||+++++++..++.+..+.+..++++|+.||+++..++. +.
T Consensus 76 ~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~ 154 (331)
T 3u4y_A 76 VVAIQEGQSSM-ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVR 154 (331)
T ss_dssp EEEEEECSSCC-CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred EEecccCCCCc-cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEE
Confidence 45555555553 3499999985 773333111229999999999999998888777555555567789999998888 99
Q ss_pred EEECCCCcEE-----EEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcE---EEEEEeccCCeeeeeceeeEe
Q 019103 174 IYDQNNLNKL-----EEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKV---IRKDIVRYKGREVRNLNELEF 243 (346)
Q Consensus 174 V~D~~tl~~i-----~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kv---i~~I~V~~~G~pv~~lNELE~ 243 (346)
+||.+....+ ..++.+ .+.+..+++||++||+++ ++++|+++|++++++ +.++..+. .| ..+.+
T Consensus 155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~--~~----~~~~~ 228 (331)
T 3u4y_A 155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN--LP----GTIVV 228 (331)
T ss_dssp EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSS--CC----CCEEE
T ss_pred EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCC--CC----ceEEE
Confidence 8887643222 223333 467888999999999987 588999999999998 77777643 22 23555
Q ss_pred e-CC-EEEEEecCCCeEEEEeCCCCeE--EEEEECCc-hhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 244 I-KG-EVWANVWQTDCIARISHEDGVV--LGWVLLPN-LRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 244 ~-~G-~LyaNv~~sn~I~vID~~TG~V--v~~I~l~~-l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
. || +||+.....+.|.++|+++|++ +..+...- +.+. .....++++|+|++++||+++..-+.+..++
T Consensus 229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR-------PLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG-------GGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC-------CcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 44 6999988888999999999999 66654310 1110 0112378999999999999999888888777
Q ss_pred Ee
Q 019103 319 LR 320 (346)
Q Consensus 319 l~ 320 (346)
+.
T Consensus 302 ~~ 303 (331)
T 3u4y_A 302 IS 303 (331)
T ss_dssp TT
T ss_pred ec
Confidence 64
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=147.92 Aligned_cols=188 Identities=9% Similarity=-0.053 Sum_probs=143.0
Q ss_pred cCC-EEEEEcC-CCCCC-eEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe---------eCCEEEEEECCCCc
Q 019103 114 END-TLFESTG-LYGRS-SVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNNLN 181 (346)
Q Consensus 114 ~d~-~LyeStG-lyg~s-~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw---------~~~~v~V~D~~tl~ 181 (346)
+++ .+|++++ ..+.- .|.+||+++++++.+++.+..+ +..+++++++||+++. .++.+.+||+++++
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~ 108 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL 108 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence 444 6898876 32222 8999999999999999988877 7777888999999984 46889999999999
Q ss_pred EEEEEecC---------CCceeEEeeCCCEEEEEC-C-CCeEEEEeCCCCcEEEE-EEeccCCeeeeeceeeEeeCCEEE
Q 019103 182 KLEEFTHQ---------MKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRK-DIVRYKGREVRNLNELEFIKGEVW 249 (346)
Q Consensus 182 ~i~ti~~~---------~peGwGLt~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~-I~V~~~G~pv~~lNELE~~~G~Ly 249 (346)
++++++.+ .|++..++|||++||++| + +++|++|| +|++++++ +.++. . +. +...+++.|
T Consensus 109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~--~-~~----~~~~~~~~~ 180 (373)
T 2mad_H 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT--C-YH----IHPGAPSTF 180 (373)
T ss_pred EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc--e-EE----EEeCCCceE
Confidence 99999874 367889999999999988 4 68999999 99999999 88853 2 11 334455789
Q ss_pred EEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 250 ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 250 aNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+.++.++.+++||. +|+++..+...... .. ...+....+|+++++++|+.. .-+.++.|.+
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~---~~----~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~ 241 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAML---TA----AQNLLTQPAQANKSGRIVWPV-YSGKILQADI 241 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccc---cC----CcceeecceeEecCCEEEEEc-CCceEEEEec
Confidence 88999999999999 99999776532111 00 011334467777777655544 4567887776
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=156.72 Aligned_cols=147 Identities=9% Similarity=-0.037 Sum_probs=117.9
Q ss_pred EeCCEEEEEEee----CCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC----------CCCeEEEEeCCCCc
Q 019103 157 LLGEKLFQVTWL----QKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD----------GSSMLYQIDPQTLK 221 (346)
Q Consensus 157 ~~g~~LY~ltw~----~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd----------Gs~~l~vIDp~T~k 221 (346)
++++++|+++|. .+.++|||++|++++++|+++ .| +..++|||++||++| .++.|++||++|++
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 467999999998 889999999999999999997 56 599999999999987 26889999999999
Q ss_pred EEEEEEeccCCe--eeeeceeeEee--CCEEEEEecC-CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeE--
Q 019103 222 VIRKDIVRYKGR--EVRNLNELEFI--KGEVWANVWQ-TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNG-- 294 (346)
Q Consensus 222 vi~~I~V~~~G~--pv~~lNELE~~--~G~LyaNv~~-sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNG-- 294 (346)
++++|.++..++ .-..+..+.+. +.+|||.+.. ++.|++||++|++|+++|+++++.. ..|.|
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~----------~~P~g~~ 190 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH----------IFPTAPD 190 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE----------EEEEETT
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcce----------eecCCCc
Confidence 999999964211 00122335554 4589998864 8999999999999999999876532 13455
Q ss_pred --EEEeCCCCEEEEecCCCCcE
Q 019103 295 --IAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 295 --IA~d~~~~~LfVTGK~Wp~l 314 (346)
++..+||+.+||+-+.-+++
T Consensus 191 ~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp EEEEEETTSCEEEEECCSSSCC
T ss_pred eeEEECCCCCEEEEECCCCCeE
Confidence 48889999999987766666
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-15 Score=134.96 Aligned_cols=175 Identities=9% Similarity=0.060 Sum_probs=128.6
Q ss_pred cceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEee--CCEEEEEECCCC
Q 019103 106 FTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWL--QKTGFIYDQNNL 180 (346)
Q Consensus 106 FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~--~~~v~V~D~~tl 180 (346)
...||+++++ +.||++.. +.++|.++|++..........+ ...+.|++++ +++||++++. .+.+++++.+.
T Consensus 80 ~p~~ia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg- 155 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDS--QLDRIEVAKMDGTQRRVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG- 155 (267)
T ss_dssp CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-
T ss_pred CccEEEEEecCCeEEEEEC--CCCEEEEEEcCCCCEEEEEECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-
Confidence 3479999975 68999987 6679999999854322222222 1234667776 6899999998 68999998753
Q ss_pred cEEEEEe---cCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCC
Q 019103 181 NKLEEFT---HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTD 256 (346)
Q Consensus 181 ~~i~ti~---~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn 256 (346)
+....+. ...|.|.++++|+++||++| ++++|+++|+.+.+....+. ..+.|. .+...+++||++.|..+
T Consensus 156 ~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~--~~~~P~----gi~~d~~~lyva~~~~~ 229 (267)
T 1npe_A 156 TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE--GLQYPF----AVTSYGKNLYYTDWKTN 229 (267)
T ss_dssp CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE--CCCSEE----EEEEETTEEEEEETTTT
T ss_pred CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec--CCCCce----EEEEeCCEEEEEECCCC
Confidence 2223332 23578888999999999999 68899999998755443333 223454 36677899999999999
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
.|.+||+++|+++.+|.+... .-|.|||+.|++-
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~------------~~p~gi~~~~~~~ 263 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQ------------TRLYGITIALSQC 263 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSC------------CCCCCEEEECSCC
T ss_pred eEEEEeCCCCCceEEEccccc------------cccceeeecCccC
Confidence 999999999999999965221 1479999999864
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-16 Score=160.69 Aligned_cols=185 Identities=14% Similarity=0.017 Sum_probs=149.2
Q ss_pred CC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEE----EeCCEEEEEE-----------------eeCCEE
Q 019103 115 ND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLT----LLGEKLFQVT-----------------WLQKTG 172 (346)
Q Consensus 115 d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit----~~g~~LY~lt-----------------w~~~~v 172 (346)
|| .||++.. +.++|.+||+++.|+.+.+.++...-.+|++ ++++++|+.+ |..+.+
T Consensus 100 DG~~lfVnd~--~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDK--ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEET--TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcC--CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 55 5999876 6789999999999999966665433356777 4678999995 888899
Q ss_pred EEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECC-C-------------------------------------CeEE
Q 019103 173 FIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDG-S-------------------------------------SMLY 213 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdG-s-------------------------------------~~l~ 213 (346)
.++|++|++++.+++++ .|+|..+++||+++|+++. + +.|.
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999999999999994 7999999999999999873 4 2499
Q ss_pred EEeCCC--CcE-EEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCe------------EEEEEECCchh
Q 019103 214 QIDPQT--LKV-IRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGV------------VLGWVLLPNLR 278 (346)
Q Consensus 214 vIDp~T--~kv-i~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~------------Vv~~I~l~~l~ 278 (346)
|||+++ .++ +++|+|+.. |..- .+..++.++||++..+|+|++||.++.+ +++.+.+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~--PhGv--~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v---- 329 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANN--PHGC--NMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL---- 329 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESS--CCCE--EECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC----
T ss_pred EEeCcccCCceeEEEEecCCC--ceEE--EEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC----
Confidence 999998 667 899999863 3320 1223355899999999999999999874 4555533
Q ss_pred hhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 279 ERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 279 ~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+.-|-++||+|+| ++|+|.-....+..+.+.
T Consensus 330 ----------G~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 330 ----------GLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp ----------CSCEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred ----------CCCcceEEECCCC-eEEEEEecCCcEEEEEhh
Confidence 3468999999999 999999999998887764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-16 Score=155.82 Aligned_cols=226 Identities=12% Similarity=0.101 Sum_probs=153.7
Q ss_pred eeEEEEEE-------ecCCCCcceeEEEecCCEEEEEcCC----CCCCeEEEEECCCCcEEEEeccCCC--eeEEEE--E
Q 019103 92 TIQVVNEF-------PHDPRAFTQGLLYAENDTLFESTGL----YGRSSVRRVALETGKVEAINQMEGS--YFGEGL--T 156 (346)
Q Consensus 92 t~~Vv~t~-------phd~~~FTqGL~~~~d~~LyeStGl----yg~s~V~~iDl~Tgkv~~~~~l~~~--~FgeGi--t 156 (346)
..++++++ +++ .++..++...||| +|+|+-. .+...|.++|.+|++++.+++.+.. .|+-.+ .
T Consensus 119 ~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~ 196 (462)
T 2ece_A 119 EPKIIKVIEPEEVKKVSG-YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWN 196 (462)
T ss_dssp SCEEEEEECHHHHHHHHC-EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEE
T ss_pred CceeeeeechhhcccccC-CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEEC
Confidence 35777777 232 2244788999999 9987641 1347999999999999999987633 455333 5
Q ss_pred EeCCEEEEEEee------------------CCEEEEEECCCCcEEEEEecC----CCceeEE--eeCCCEEEEEC-----
Q 019103 157 LLGEKLFQVTWL------------------QKTGFIYDQNNLNKLEEFTHQ----MKDGWGL--ATDGKVLFGSD----- 207 (346)
Q Consensus 157 ~~g~~LY~ltw~------------------~~~v~V~D~~tl~~i~ti~~~----~peGwGL--t~Dg~~LyvSd----- 207 (346)
++++.+|.++|- .++|.+||.++++++++++++ +|-+..+ ++||+++|+++
T Consensus 197 p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~ 276 (462)
T 2ece_A 197 LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLK 276 (462)
T ss_dssp TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETT
T ss_pred CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeecc
Confidence 578889999974 899999999999999999986 2233334 88999999965
Q ss_pred -CCCeEEEEeCCC--CcEEEEEEeccCCeee---------------eeceeeEee--CCEEEEEecCCCeEEEEeCC---
Q 019103 208 -GSSMLYQIDPQT--LKVIRKDIVRYKGREV---------------RNLNELEFI--KGEVWANVWQTDCIARISHE--- 264 (346)
Q Consensus 208 -Gs~~l~vIDp~T--~kvi~~I~V~~~G~pv---------------~~lNELE~~--~G~LyaNv~~sn~I~vID~~--- 264 (346)
-+++|.++..+. ++.+..|.+.. .++ ....++... +.+|||++|..|.|+++|..
T Consensus 277 ~Lss~V~v~~~d~g~~~~~~vIdi~~--~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~ 354 (462)
T 2ece_A 277 DLSSSIWLWFYEDGKWNAEKVIEIPA--EPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF 354 (462)
T ss_dssp TCCEEEEEEEEETTEEEEEEEEEECC--EECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT
T ss_pred CCCceEEEEEecCCceeEEEEEeCCC--ccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 577887655433 33333443322 110 112233332 45899999999999998854
Q ss_pred CCeEEEEEECCchhhhhhh-ccCCCCceeeEEEEeCCCCEEEEec--------C-----CCCcEEEEEEee
Q 019103 265 DGVVLGWVLLPNLRERLVA-AGYNGIDVLNGIAWDSNRNRIFVTG--------K-----LWPKLYEINLRE 321 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~-~~~~~~~vlNGIA~d~~~~~LfVTG--------K-----~Wp~l~ev~l~~ 321 (346)
+.+++++|.+.+....... .+.+...-|.+++++|+|++||||+ | +-..|++++..+
T Consensus 355 ~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~ 425 (462)
T 2ece_A 355 KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANP 425 (462)
T ss_dssp SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECT
T ss_pred CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecC
Confidence 6799999988532100000 0011112589999999999999999 6 556788776553
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-15 Score=138.04 Aligned_cols=187 Identities=17% Similarity=0.199 Sum_probs=131.4
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCc--EE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLN--KL 183 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~--~i 183 (346)
..||+++++|+||++....+...|.++|..+|++.....++...|..|++.. ++.+|++++.++.++++|+.+.+ +.
T Consensus 74 p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 74 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEE
Confidence 3799999999999997522223699999999998766666666778888764 57899999989999999988652 22
Q ss_pred EE-------Eec-CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCC-CcEEE-EEEeccCCeeeeeceeeEee-CCEEEEE
Q 019103 184 EE-------FTH-QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQT-LKVIR-KDIVRYKGREVRNLNELEFI-KGEVWAN 251 (346)
Q Consensus 184 ~t-------i~~-~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T-~kvi~-~I~V~~~G~pv~~lNELE~~-~G~LyaN 251 (346)
.. ... +...+-|+++|+++||++| +.++|+++|.+. .++.. ++.. ..+.| ..|.+. +|.||++
T Consensus 154 ~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P----~gi~vd~dG~l~va 228 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNI----DDFAFDVEGNLYGA 228 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCC----SSEEEBTTCCEEEE
T ss_pred EECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCC----CCeEECCCCCEEEE
Confidence 10 011 1234556799999999999 588999999864 33211 1111 11123 336555 6899999
Q ss_pred ecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEe---CCCCEEEEecCC
Q 019103 252 VWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWD---SNRNRIFVTGKL 310 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d---~~~~~LfVTGK~ 310 (346)
+|..+.|.+||++ |++.....+ .. ....|.++|+. |++++||||...
T Consensus 229 ~~~~~~V~~~~~~-G~~~~~~~~-~~----------~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 229 THIYNSVVRIAPD-RSTTIIAQA-EQ----------GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CBTTCCEEEECTT-CCEEEEECG-GG----------TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eCCCCeEEEECCC-CCEEEEeec-cc----------ccCCceEEEEecccCCCCEEEEECCC
Confidence 9999999999996 876432211 11 12358999999 899999999643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=138.37 Aligned_cols=159 Identities=9% Similarity=-0.000 Sum_probs=124.4
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC--CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~--~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
|+++.+++.+|++++ +++.|.+||+++++++..+.++. .+.+..++.+++.+|++...++.+.++|.++++.+.++
T Consensus 4 g~~~~~~~~~~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN--YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTTCEEEEEEE--TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeC--CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 677888889999987 56799999999999999998876 55554455567889999999999999999999999998
Q ss_pred ecCC--------CceeEEeeCCCEEEEECC------------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-C
Q 019103 187 THQM--------KDGWGLATDGKVLFGSDG------------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (346)
Q Consensus 187 ~~~~--------peGwGLt~Dg~~LyvSdG------------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~ 245 (346)
+.+. +.+..+++||++||+++. .+.|+++|++++++.+.+....... .+..+.+. |
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~d 158 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR---QVYLMRAADD 158 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS---SCCCEEECTT
T ss_pred EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC---cccceeECCC
Confidence 8642 578889999999999773 4899999999966554444432211 22334454 6
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECC
Q 019103 246 GEVWANVWQTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
|++|+. ++.|.++|+++|+++..+...
T Consensus 159 g~l~~~---~~~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 159 GSLYVA---GPDIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp SCEEEE---SSSEEEECTTTCCEEEEECST
T ss_pred CcEEEc---cCcEEEEeCCCCceecccccc
Confidence 678885 445999999999999988663
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-14 Score=130.12 Aligned_cols=199 Identities=13% Similarity=0.160 Sum_probs=141.9
Q ss_pred EEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC---CCeeEEEEEEe-CCEEEEEEeeC----
Q 019103 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME---GSYFGEGLTLL-GEKLFQVTWLQ---- 169 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~---~~~FgeGit~~-g~~LY~ltw~~---- 169 (346)
.+.++..+ .+++++++|+||+++. +.|.++|++++++....... +.....+++.+ .+++|+.++..
T Consensus 49 ~~~~~~~~--~~i~~~~dG~l~v~~~----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~ 122 (297)
T 3g4e_A 49 RVTMDAPV--SSVALRQSGGYVATIG----TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAP 122 (297)
T ss_dssp EEECSSCE--EEEEEBTTSSEEEEET----TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBT
T ss_pred EEeCCCce--EEEEECCCCCEEEEEC----CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccc
Confidence 34444333 7999999999999874 58999999999875544432 22334556665 36799998653
Q ss_pred -------CEEEEEECCCCcEEEEEec-CCCceeEEeeCCCEEEEEC-CCCeEEEEeC--CCCcEEEE-EEe--cc-CCee
Q 019103 170 -------KTGFIYDQNNLNKLEEFTH-QMKDGWGLATDGKVLFGSD-GSSMLYQIDP--QTLKVIRK-DIV--RY-KGRE 234 (346)
Q Consensus 170 -------~~v~V~D~~tl~~i~ti~~-~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp--~T~kvi~~-I~V--~~-~G~p 234 (346)
+.++.+|++ .+....... ..|.|..+++||++||++| .++.|+++|. +++++... +-. .. .+.|
T Consensus 123 ~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p 201 (297)
T 3g4e_A 123 AVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIP 201 (297)
T ss_dssp TBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEE
T ss_pred ccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCC
Confidence 478999975 333332222 2478899999999999998 4789999974 67775432 221 11 2344
Q ss_pred eeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEe-CCCCEEEEecCC--
Q 019103 235 VRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWD-SNRNRIFVTGKL-- 310 (346)
Q Consensus 235 v~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d-~~~~~LfVTGK~-- 310 (346)
- .+.++ +|.||++.|..+.|.++|++||+++.+|.++. ..+.++||. |++++||||...
T Consensus 202 ~----g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~-------------~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 202 D----GMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV-------------DKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp E----EEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS-------------SBEEEEEEESGGGCEEEEEEBCTT
T ss_pred C----eeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC-------------CCceEEEEeCCCCCEEEEEcCCcC
Confidence 3 36555 68999999999999999999999999997731 146889998 899999999753
Q ss_pred -----------CCcEEEEEEe
Q 019103 311 -----------WPKLYEINLR 320 (346)
Q Consensus 311 -----------Wp~l~ev~l~ 320 (346)
-+.||.|+..
T Consensus 265 ~~~~~~~~~p~~G~~f~~~~~ 285 (297)
T 3g4e_A 265 MDPEGLLRQPEAGGIFKITGL 285 (297)
T ss_dssp CCHHHHHHCTTTTCEEEEECC
T ss_pred CChhHccCCCCCceEEEecCC
Confidence 3568888743
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.1e-14 Score=132.11 Aligned_cols=203 Identities=13% Similarity=0.054 Sum_probs=156.3
Q ss_pred EEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe-----
Q 019103 94 QVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW----- 167 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw----- 167 (346)
+.+.+++. ......++.+++++ .+|++.. .+..|.+||+++++.+..+.....+.+..+..+++.||++.+
T Consensus 202 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 202 AYKATVDL-TGKWSKILLYDPIRDLVYCSNW--ISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp CEEEEEEC-SSSSEEEEEEETTTTEEEEEET--TTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred eEEEEEcC-CCCCeeEEEEcCCCCEEEEEec--CCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence 45566652 23445799999988 5777765 456999999999999888877666544444446778999987
Q ss_pred --eCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe
Q 019103 168 --LQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (346)
Q Consensus 168 --~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~ 243 (346)
.++.+.++|..+.+.+..+..+ .+.+..+++|++.+|++. .+++|.++|+++.+++..+..+. .+ +.+.+
T Consensus 279 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~--~~----~~~~~ 352 (433)
T 3bws_A 279 ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFD--KP----NTIAL 352 (433)
T ss_dssp CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSS--SE----EEEEE
T ss_pred ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCC--CC----CeEEE
Confidence 4568999999999999988653 456777889999999985 68899999999999998887543 22 34555
Q ss_pred e-CC-EEEEEecCCC--------------eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 244 I-KG-EVWANVWQTD--------------CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 244 ~-~G-~LyaNv~~sn--------------~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
. +| .||+.....+ .|.++|+++++++..+.. ...+.+++|+|+++.|+++
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--------------~~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--------------GNQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--------------SSSEEEEEECTTSCEEEEE
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--------------CCCCceEEEcCCCCEEEEE
Confidence 5 34 7998876543 899999999999998854 1246899999999999999
Q ss_pred cCCCCcEEEEEE
Q 019103 308 GKLWPKLYEINL 319 (346)
Q Consensus 308 GK~Wp~l~ev~l 319 (346)
+.....++-.++
T Consensus 419 ~~~d~~i~v~~~ 430 (433)
T 3bws_A 419 DFLDHQIRVYRR 430 (433)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCCeEEEEEe
Confidence 887777776654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-14 Score=131.31 Aligned_cols=216 Identities=11% Similarity=0.081 Sum_probs=147.0
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEE--EEe-ccCCCeeEEEEEEeCCEEEEEEeeC
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVE--AIN-QMEGSYFGEGLTLLGEKLFQVTWLQ 169 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~--~~~-~l~~~~FgeGit~~g~~LY~ltw~~ 169 (346)
++.+....+...+ .+++++|||+||.++...++..|.+||+++|+.. ... .....+.+..++.+++.||++.+.+
T Consensus 30 ~~~~~~~~~~~~p--~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~ 107 (347)
T 3hfq_A 30 LTNDGLLAATQNP--TYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK 107 (347)
T ss_dssp EEEEEEEEECSCC--CCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT
T ss_pred EEEeeeeeccCCc--ceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC
Confidence 4455566666666 6999999999887764224679999999988743 332 2344555555666788999999999
Q ss_pred CEEEEEECC---CCcEEEEEecCC-----------CceeEEeeCCCEEEEEC-CCCeEEEEeCC-CCcEEE--EEEeccC
Q 019103 170 KTGFIYDQN---NLNKLEEFTHQM-----------KDGWGLATDGKVLFGSD-GSSMLYQIDPQ-TLKVIR--KDIVRYK 231 (346)
Q Consensus 170 ~~v~V~D~~---tl~~i~ti~~~~-----------peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~-T~kvi~--~I~V~~~ 231 (346)
+.+.++|.+ +++.+.++.... +.+..+++||+ +|+++ ++++|+++|.+ +.++.. .+.....
T Consensus 108 ~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 186 (347)
T 3hfq_A 108 GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG 186 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTT
T ss_pred CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC
Confidence 999999986 566666665531 23478899999 99988 58899999987 555433 2233222
Q ss_pred CeeeeeceeeEee-CC-EEEEEecCCCeEEEEeCC--CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 232 GREVRNLNELEFI-KG-EVWANVWQTDCIARISHE--DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 232 G~pv~~lNELE~~-~G-~LyaNv~~sn~I~vID~~--TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
..|. .+.+. || +||+.....+.|.++|.+ +|+....-.+..+.. +......+++|||+|++++|||+
T Consensus 187 ~~p~----~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 187 FGPR----HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA-----DYTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp CCEE----EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT-----TCCSCCEEEEEEECTTSCEEEEE
T ss_pred CCCc----eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC-----CCCCCCcceeEEECCCCCEEEEE
Confidence 1332 35555 45 699988888888887765 577533222211110 11223578999999999999999
Q ss_pred cCCCCcEEEEEEe
Q 019103 308 GKLWPKLYEINLR 320 (346)
Q Consensus 308 GK~Wp~l~ev~l~ 320 (346)
+..-+.|...++.
T Consensus 258 ~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 258 NRGYNTLAVFAVT 270 (347)
T ss_dssp EETTTEEEEEEEC
T ss_pred eCCCCEEEEEEEC
Confidence 8877777666654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-13 Score=124.86 Aligned_cols=214 Identities=7% Similarity=0.061 Sum_probs=151.4
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECC--CCcEE--EEeccCCCeeEEEEEEeCCEEEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALE--TGKVE--AINQMEGSYFGEGLTLLGEKLFQVT 166 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~--Tgkv~--~~~~l~~~~FgeGit~~g~~LY~lt 166 (346)
+.+.+..+++...+ .++++++||+ ||+++. +...|.+||++ +|+.. ..+..+..+....++.+++.||++.
T Consensus 27 ~~~~~~~~~~~~~~--~~~~~spdg~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 102 (343)
T 1ri6_A 27 ALTLTQVVDVPGQV--QPMVVSPDKRYLYVGVR--PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGS 102 (343)
T ss_dssp CEEEEEEEECSSCC--CCEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEE
T ss_pred cEEEeeeEecCCCC--ceEEECCCCCEEEEeec--CCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEe
Confidence 34677778887666 6999999985 777765 44699998887 77643 4455545554544555678899999
Q ss_pred eeCCEEEEEEC---CCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCC-CcEEEE----EEeccCCeeee
Q 019103 167 WLQKTGFIYDQ---NNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQT-LKVIRK----DIVRYKGREVR 236 (346)
Q Consensus 167 w~~~~v~V~D~---~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T-~kvi~~----I~V~~~G~pv~ 236 (346)
+.++.+.++|. .+.+.+..++.. .+.+..+++||++||+++ +++.|+++|..+ .++... +.......|
T Consensus 103 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-- 180 (343)
T 1ri6_A 103 YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGP-- 180 (343)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCE--
T ss_pred cCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCc--
Confidence 99999999999 566667776653 467788999999999998 789999999887 665432 222222223
Q ss_pred eceeeEee-CC-EEEEEecCCCeEEEEeC--CCCeE--EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 237 NLNELEFI-KG-EVWANVWQTDCIARISH--EDGVV--LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 237 ~lNELE~~-~G-~LyaNv~~sn~I~vID~--~TG~V--v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+.+.+. +| ++|+....++.|.++|. ++|+. ...+.. +.. +......+.+|+|+|+++.||+++..
T Consensus 181 --~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~--~~~-----~~~~~~~~~~i~~s~dg~~l~v~~~~ 251 (343)
T 1ri6_A 181 --RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM--MPE-----NFSDTRWAADIHITPDGRHLYACDRT 251 (343)
T ss_dssp --EEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEEC--SCT-----TCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred --ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccc--cCc-----cccccCCccceEECCCCCEEEEEecC
Confidence 235554 34 69999888999999999 45665 333321 110 11123467899999999999999987
Q ss_pred CCcEEEEEEe
Q 019103 311 WPKLYEINLR 320 (346)
Q Consensus 311 Wp~l~ev~l~ 320 (346)
-+.++..++.
T Consensus 252 ~~~i~v~d~~ 261 (343)
T 1ri6_A 252 ASLITVFSVS 261 (343)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEEEEEEc
Confidence 7777776664
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-15 Score=139.54 Aligned_cols=191 Identities=10% Similarity=0.029 Sum_probs=135.8
Q ss_pred CcceeEEEecCCEEEEEcCC---CCCCeEEEEECCCCcEEEEeccCC-----CeeEEEEEEe--CCEEEEEEe---eCCE
Q 019103 105 AFTQGLLYAENDTLFESTGL---YGRSSVRRVALETGKVEAINQMEG-----SYFGEGLTLL--GEKLFQVTW---LQKT 171 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGl---yg~s~V~~iDl~Tgkv~~~~~l~~-----~~FgeGit~~--g~~LY~ltw---~~~~ 171 (346)
...+|++++++|+||+.... .+..+|.+||+++|+++..+.++. ..|..+++++ ++.+|+++. .++.
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 34579999999999997531 014699999999999988887753 2345677776 579999998 8899
Q ss_pred EEEEECCCCcEEEEEec-------------------------------CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCC
Q 019103 172 GFIYDQNNLNKLEEFTH-------------------------------QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQT 219 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~-------------------------------~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T 219 (346)
+.++|.++.+....+.. ..+.|.++++||++||+++ .++.|+.+|+..
T Consensus 147 i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~ 226 (343)
T 2qe8_A 147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD 226 (343)
T ss_dssp EEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred EEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence 99999998877664421 0247788899999999988 467999998642
Q ss_pred Cc--------EEEEEE-eccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCC
Q 019103 220 LK--------VIRKDI-VRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGI 289 (346)
Q Consensus 220 ~k--------vi~~I~-V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~ 289 (346)
.+ +...+. .+..|.| +-+.++ +|.||++.|..+.|.++|+++|++...+.. . ..
T Consensus 227 ~~~~~~~~~~~~~~~~~~g~~g~p----dgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~-----------~~ 290 (343)
T 2qe8_A 227 LSNLQLTDAELGSKIERYSEKPIC----DGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-E-----------KL 290 (343)
T ss_dssp HTCTTCCHHHHHTTCEEEEECCSC----SCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-G-----------GG
T ss_pred hcCCCCChhhhhcceEecccCCCC----ceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-C-----------ce
Confidence 11 111111 1222322 346565 689999999999999999988986444422 1 12
Q ss_pred ceeeEEEEeCCCCEEEEecCCCC
Q 019103 290 DVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 290 ~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
..|.|||+++++ +||||.-..+
T Consensus 291 ~~p~~va~~~~g-~l~v~~~~~~ 312 (343)
T 2qe8_A 291 SWTDSFNFGSDG-YLYFDCNQLH 312 (343)
T ss_dssp SCEEEEEECTTS-CEEEEECCGG
T ss_pred ecCCeeEECCCC-cEEEEeCccc
Confidence 368999999885 5777755443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-13 Score=123.48 Aligned_cols=188 Identities=12% Similarity=0.013 Sum_probs=136.3
Q ss_pred eeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 108 QGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
.|++++++ +.||++.. +..+|.++|++++++...+..+ -..+.|++++ +++||++++.++.+.++|.+......
T Consensus 39 ~gi~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~~~~~~-~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 39 IGLAFDCVDKVVYWTDI--SEPSIGRASLHGGEPTTIIRQD-LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEETTTTEEEEEET--TTTEEEEEESSSCCCEEEECTT-CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEEEEecCCCEEEEEEC--CCCEEEEEecCCCCcEEEEECC-CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 69999974 68999976 6679999999887654333322 1235778875 68999999999999999986433222
Q ss_pred EEec--CCCceeEEeeCCCEEEEECC---CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCCe
Q 019103 185 EFTH--QMKDGWGLATDGKVLFGSDG---SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDC 257 (346)
Q Consensus 185 ti~~--~~peGwGLt~Dg~~LyvSdG---s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~ 257 (346)
-++. ..|.|..+++++++||++|. .+.|+.+++... ....+.-. .+..+|.|.+. +++||++.+..+.
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~----~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQD----NLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECT----TCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEEC----CCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 2222 25788888999999999984 469999987542 22222211 12244557665 5799999999999
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
|.++|++++.+...++. ...|.|||.+ +++||||...-+.|+.+..
T Consensus 191 I~~~~~~g~~~~~~~~~--------------~~~P~gi~~d--~~~lyva~~~~~~v~~~d~ 236 (267)
T 1npe_A 191 AECLNPAQPGRRKVLEG--------------LQYPFAVTSY--GKNLYYTDWKTNSVIAMDL 236 (267)
T ss_dssp EEEEETTEEEEEEEEEC--------------CCSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred EEEEecCCCceEEEecC--------------CCCceEEEEe--CCEEEEEECCCCeEEEEeC
Confidence 99999997766554421 2357999987 5899999888889998876
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-13 Score=129.42 Aligned_cols=185 Identities=15% Similarity=0.101 Sum_probs=146.0
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
...++.+++++.+|++++ .+..|.+||+++++.+..+.. ...+.+..+..+++.+|++...++.+.++|.++.+.+.
T Consensus 171 ~v~~~~~~~~~~~~~s~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~ 248 (433)
T 3bws_A 171 FVETISIPEHNELWVSQM--QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIR 248 (433)
T ss_dssp EEEEEEEGGGTEEEEEEG--GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred ceeEEEEcCCCEEEEEEC--CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEE
Confidence 446789988899999887 567999999999999888764 33343444444578899999999999999999999999
Q ss_pred EEecC-CCceeEEeeCCCEEEEEC--------CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEec
Q 019103 185 EFTHQ-MKDGWGLATDGKVLFGSD--------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVW 253 (346)
Q Consensus 185 ti~~~-~peGwGLt~Dg~~LyvSd--------Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~ 253 (346)
+++.. .+.+..+++||+.||++. +++.|+++|+.+.+++..+.... .+ ..+.+. +| ++|+...
T Consensus 249 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~----~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 249 KTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG--NK----RHIVSGNTENKIYVSDM 322 (433)
T ss_dssp ECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--CE----EEEEECSSTTEEEEEET
T ss_pred EecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--Cc----ceEEECCCCCEEEEEec
Confidence 88864 356666788999999976 35699999999999888775533 12 224444 34 8999998
Q ss_pred CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 254 QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
..+.|.++|+++++++..+... ..+++++++|+++.+|+++...+
T Consensus 323 ~~~~v~v~d~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~l~~~~~~~~ 367 (433)
T 3bws_A 323 CCSKIEVYDLKEKKVQKSIPVF--------------DKPNTIALSPDGKYLYVSCRGPN 367 (433)
T ss_dssp TTTEEEEEETTTTEEEEEEECS--------------SSEEEEEECTTSSEEEEEECCCC
T ss_pred CCCEEEEEECCCCcEEEEecCC--------------CCCCeEEEcCCCCEEEEEecCCC
Confidence 9999999999999999888541 24689999999999999987643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-14 Score=125.96 Aligned_cols=195 Identities=12% Similarity=0.169 Sum_probs=140.4
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
...|++++++|.||+++. ...|.+||++++... ...........+++.+ +++||++++.++.++++|..+.....
T Consensus 68 ~p~~i~~~~~g~l~v~~~---~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~ 143 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDF---NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV 143 (270)
T ss_dssp SCCCEEECTTCCEEEEET---TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred CcceeEECCCCCEEEEcC---CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence 347999999999999976 359999999877543 3333332345677776 46799999999999999987765543
Q ss_pred EEecC--CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEE
Q 019103 185 EFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIAR 260 (346)
Q Consensus 185 ti~~~--~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~v 260 (346)
....+ .|.|..+++||+ ||+++ +++.|+++|+.+.+....... . ...++.+.+. +|+||++.+..+.|.+
T Consensus 144 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~-~----~~~p~~i~~d~~g~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 144 LPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVLPFT-D----ITAPWGIAVDEAGTVYVTEHNTNQVVK 217 (270)
T ss_dssp CCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEECCCS-S----CCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred eccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEeeccc-C----CCCceEEEECCCCCEEEEECCCCcEEE
Confidence 32222 467778888886 99988 578999999988765432111 1 1223446565 5799999998999999
Q ss_pred EeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeeccc
Q 019103 261 ISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKR 324 (346)
Q Consensus 261 ID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~ 324 (346)
+|+++..+.. +.. .....|.|||++++++ +||++...++|..+++.+-..
T Consensus 218 ~~~~~~~~~~-~~~------------~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 218 LLAGSTTSTV-LPF------------TGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp ECTTCSCCEE-CCC------------CSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGGS
T ss_pred EcCCCCccee-ecc------------CCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCccc
Confidence 9998776432 111 1124689999999985 999999999999998875443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-14 Score=128.34 Aligned_cols=172 Identities=10% Similarity=0.018 Sum_probs=135.1
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCC---CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC----
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEG---SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---- 189 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~---~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---- 189 (346)
.++++++ +++.|.+||+.+++++..+.++. .+.+..++.+++.+|++...++.+.++|..+++.+.+++.+
T Consensus 2 ~~~v~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 2 DYILAPA--RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp EEEEEEE--TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred cEEEEcC--CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 3555655 56799999999999999998877 56555555577899999999999999999999999988862
Q ss_pred ---CCceeEEeeCCCEEEEEC------------CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEe
Q 019103 190 ---MKDGWGLATDGKVLFGSD------------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANV 252 (346)
Q Consensus 190 ---~peGwGLt~Dg~~LyvSd------------Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv 252 (346)
.+.+..+++||++||+++ .++.|+++|+++++++..+.++.. + +.+.+. +| +||+.
T Consensus 80 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~--~----~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ--I----TMLAWARDGSKLYGL- 152 (337)
T ss_dssp EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS--C----CCEEECTTSSCEEEE-
T ss_pred ccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC--c----ceeEECCCCCEEEEe-
Confidence 467888999999999986 468999999999999988887542 2 234444 44 68888
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019103 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
++.|.++|+++++++..++.... ...++++|+++.+|+++.....
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~--------------~~~~~~s~dg~~l~~~~~~~~~ 197 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSW--------------EAETYAQPDVLAVWNQHESSGV 197 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTT--------------TTTTBCCCBCCCCCCCCTTTTE
T ss_pred --CCeEEEEECCCCcEeeeeecccc--------------CCCceeCCCccEEeeeccCCCc
Confidence 67899999999999988865221 0123688999988888876654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-13 Score=129.63 Aligned_cols=181 Identities=11% Similarity=0.093 Sum_probs=131.2
Q ss_pred ceeEEEecCCEEEEEcCCCC----------------------CCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEE
Q 019103 107 TQGLLYAENDTLFESTGLYG----------------------RSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLF 163 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg----------------------~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY 163 (346)
..|++++++|++|++..... ++.|.++|.++|+++.......-..+.|++++ +++||
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~ 105 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYW 105 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEE
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEE
Confidence 46999999999999876221 14799999999999876654332345778886 35699
Q ss_pred EEEeeCCEEEEEECCCCc-EEEEEec-----------CCCceeEEeeCCCEEEEECC--CCeEEEEeCCCCcEEEEEEec
Q 019103 164 QVTWLQKTGFIYDQNNLN-KLEEFTH-----------QMKDGWGLATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 164 ~ltw~~~~v~V~D~~tl~-~i~ti~~-----------~~peGwGLt~Dg~~LyvSdG--s~~l~vIDp~T~kvi~~I~V~ 229 (346)
+++..++.|.++|++... .+.++.. ..|.|.+++++++.||++|+ .+.|.++|+ +++.+..+...
T Consensus 106 v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~ 184 (329)
T 3fvz_A 106 VTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEE 184 (329)
T ss_dssp EEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEE
T ss_pred EEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccC
Confidence 999999999999986542 5555531 13566677776788999993 789999994 67777666443
Q ss_pred cCC-----eeeeeceeeEee-C-CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeC
Q 019103 230 YKG-----REVRNLNELEFI-K-GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDS 299 (346)
Q Consensus 230 ~~G-----~pv~~lNELE~~-~-G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~ 299 (346)
..+ ..+..++.+.+. + |+|||+.+..+.|.++|+++|+.+.++..... +.-+.++++.|
T Consensus 185 g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~-----------~~~~~~~~~~p 250 (329)
T 3fvz_A 185 SSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF-----------GRNVFAISYIP 250 (329)
T ss_dssp CCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT-----------TTCEEEEEEET
T ss_pred CCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc-----------CCCcceeeecC
Confidence 221 133345557665 4 89999999999999999999999999855221 22456777777
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-13 Score=126.59 Aligned_cols=208 Identities=12% Similarity=0.131 Sum_probs=144.1
Q ss_pred CceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEE
Q 019103 88 PSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVT 166 (346)
Q Consensus 88 ~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~lt 166 (346)
+...+.+++.++|.+ .+.+|++++++|+||++.. ...+|.+||+++ ++......+..+ .|++++ +++||+++
T Consensus 17 ~~~~~~~~~~~~p~~--~~pegia~~~~g~lyv~d~--~~~~I~~~d~~g-~~~~~~~~~~~p--~gia~~~dG~l~vad 89 (306)
T 2p4o_A 17 IELAPAKIITSFPVN--TFLENLASAPDGTIFVTNH--EVGEIVSITPDG-NQQIHATVEGKV--SGLAFTSNGDLVATG 89 (306)
T ss_dssp BCCCCEEEEEEECTT--CCEEEEEECTTSCEEEEET--TTTEEEEECTTC-CEEEEEECSSEE--EEEEECTTSCEEEEE
T ss_pred CcCCCceEeEeCCCC--CCcceEEECCCCCEEEEeC--CCCeEEEECCCC-ceEEEEeCCCCc--eeEEEcCCCcEEEEe
Confidence 344578999999975 5569999999999999975 456999999986 565666666554 567765 35699999
Q ss_pred eeCC--EEEEEECCCCcEEEEEecC---CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEec-----cCCeee
Q 019103 167 WLQK--TGFIYDQNNLNKLEEFTHQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR-----YKGREV 235 (346)
Q Consensus 167 w~~~--~v~V~D~~tl~~i~ti~~~---~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~-----~~G~pv 235 (346)
+..+ .++++|..++++..-...+ .++|..+ .++..+|++| +.+.|+++|+.+.+..-...-+ ..-..+
T Consensus 90 ~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 90 WNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred ccCCcceEEEEcCCCCeEEEEEeCCCccccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 8754 5899998887765433321 3444444 3466899999 5889999999875321110000 000123
Q ss_pred eeceeeEeeCCEEEEEecCCCeEEEEeCCC-CeEE--EEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 236 RNLNELEFIKGEVWANVWQTDCIARISHED-GVVL--GWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 236 ~~lNELE~~~G~LyaNv~~sn~I~vID~~T-G~Vv--~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
...|-+...+++||++....+.|.++|++. |++- ..+ .....|.|||+|++| +|||+...-+
T Consensus 169 ~~pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~--------------~~~~~P~gi~vd~dG-~l~va~~~~~ 233 (306)
T 2p4o_A 169 PAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF--------------VEQTNIDDFAFDVEG-NLYGATHIYN 233 (306)
T ss_dssp CSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE--------------EESCCCSSEEEBTTC-CEEEECBTTC
T ss_pred CcCCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE--------------eccCCCCCeEECCCC-CEEEEeCCCC
Confidence 355667555679999999999999999975 5421 111 001358999999998 5899987778
Q ss_pred cEEEEE
Q 019103 313 KLYEIN 318 (346)
Q Consensus 313 ~l~ev~ 318 (346)
.|+.+.
T Consensus 234 ~V~~~~ 239 (306)
T 2p4o_A 234 SVVRIA 239 (306)
T ss_dssp CEEEEC
T ss_pred eEEEEC
Confidence 888874
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-12 Score=122.85 Aligned_cols=218 Identities=13% Similarity=0.235 Sum_probs=149.7
Q ss_pred ceeeeEEE-EEEecCCCCcceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEE
Q 019103 89 SIYTIQVV-NEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQV 165 (346)
Q Consensus 89 ~~~t~~Vv-~t~phd~~~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~l 165 (346)
+.|.+.+. +.+|--... ..||+++++ ++||..+. ++..|..+|+. |+++++++++...=.|||++.+ +++|++
T Consensus 11 ~~y~~~~~~~~l~g~~~~-lSGla~~~~~~~L~aV~d--~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 11 QNYHATIDGKEIAGITNN-ISSLTWSAQSNTLFSTIN--KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp TTCEEEEEEEECTTCCSC-EEEEEEETTTTEEEEEEE--TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEE
T ss_pred cceEEEEeceECCCcccC-cceeEEeCCCCEEEEEEC--CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEE
Confidence 44555555 445533333 479999975 58998766 47799999998 9999999987533469999976 677788
Q ss_pred EeeCCEEEEEECCCCc---EEEEEecC---CC-----ceeEEeeCCCEEEEEC-CCC-eEEEEe--CCC--CcEEEEEEe
Q 019103 166 TWLQKTGFIYDQNNLN---KLEEFTHQ---MK-----DGWGLATDGKVLFGSD-GSS-MLYQID--PQT--LKVIRKDIV 228 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~---~i~ti~~~---~p-----eGwGLt~Dg~~LyvSd-Gs~-~l~vID--p~T--~kvi~~I~V 228 (346)
...++.+++|+..+.. .+.++..+ .+ ||.+.++++++||++. .+. .|+.+| +.+ +++...-..
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~ 166 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL 166 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence 8899999999865433 34555432 23 8999999999999977 444 899998 222 222110000
Q ss_pred ccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019103 229 RYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
. ....+..+-.|.++ .|++|+-.-.++.|+++|.+ |+++..+++..-...+. .....|.|||+|++|+ |||
T Consensus 167 ~-~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~----~~~~qpEGia~d~~G~-lyI 239 (255)
T 3qqz_A 167 Q-RQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLS----HNIKQAEGVAMDASGN-IYI 239 (255)
T ss_dssp H-HTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCS----SCCCSEEEEEECTTCC-EEE
T ss_pred c-cccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcc----cccCCCCeeEECCCCC-EEE
Confidence 0 11122234456666 58999999999999999966 77999998842111111 1234789999999985 999
Q ss_pred ecCCCCcEEEEE
Q 019103 307 TGKLWPKLYEIN 318 (346)
Q Consensus 307 TGK~Wp~l~ev~ 318 (346)
++.- +.+|+.+
T Consensus 240 vsE~-n~~y~f~ 250 (255)
T 3qqz_A 240 VSEP-NRFYRFT 250 (255)
T ss_dssp EETT-TEEEEEE
T ss_pred EcCC-ceEEEEE
Confidence 9776 5777664
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-13 Score=123.72 Aligned_cols=196 Identities=13% Similarity=0.181 Sum_probs=139.9
Q ss_pred ceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEEEE-eccCC---CeeEEEEEEe-CCEEEEEEeeC-----------
Q 019103 107 TQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAI-NQMEG---SYFGEGLTLL-GEKLFQVTWLQ----------- 169 (346)
Q Consensus 107 TqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~~~-~~l~~---~~FgeGit~~-g~~LY~ltw~~----------- 169 (346)
..|++++++ |+||+++. + +.|.+||++ |++... ..... .....+++.+ ++++|+++...
T Consensus 73 ~~~i~~~~~~g~l~v~~~--~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~ 148 (314)
T 1pjx_A 73 PAGCQCDRDANQLFVADM--R-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp EEEEEECSSSSEEEEEET--T-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CceEEEecCCCcEEEEEC--C-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence 369999998 89999875 3 389999999 887654 32211 1223556765 36799998765
Q ss_pred ----CEEEEEECCCCcEEEEEec-CCCceeEEe----eCCCEEEEEC-CCCeEEEEeCC-CCcEEEEEEe-ccCCeeeee
Q 019103 170 ----KTGFIYDQNNLNKLEEFTH-QMKDGWGLA----TDGKVLFGSD-GSSMLYQIDPQ-TLKVIRKDIV-RYKGREVRN 237 (346)
Q Consensus 170 ----~~v~V~D~~tl~~i~ti~~-~~peGwGLt----~Dg~~LyvSd-Gs~~l~vIDp~-T~kvi~~I~V-~~~G~pv~~ 237 (346)
+.++++|++ .+....+.. ..+.|..++ +||+.||+++ +++.|+++|++ +.+....-.. ...+.....
T Consensus 149 ~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~ 227 (314)
T 1pjx_A 149 QEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG 227 (314)
T ss_dssp SSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred cCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC
Confidence 689999987 555443332 246888889 9999999998 57899999976 4443221111 111110012
Q ss_pred ceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 238 LNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 238 lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
++.+.+. +|.||++.+..+.|.++|+++|+++..+.++ ...+.+|++++++++|||++...+.|+.
T Consensus 228 p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-------------~~~~~~i~~~~dg~~l~v~~~~~~~l~~ 294 (314)
T 1pjx_A 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-------------FEKPSNLHFKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-------------SSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-------------CCCceeEEECCCCCEEEEEeCCCCeEEE
Confidence 2345555 6899999988899999999999988877552 1357999999999999999988889999
Q ss_pred EEEe
Q 019103 317 INLR 320 (346)
Q Consensus 317 v~l~ 320 (346)
+++.
T Consensus 295 ~~~~ 298 (314)
T 1pjx_A 295 FEWQ 298 (314)
T ss_dssp EECS
T ss_pred EeCC
Confidence 8864
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-13 Score=131.64 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=144.7
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC-EEEEEECCCCcEEE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK-TGFIYDQNNLNKLE 184 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~-~v~V~D~~tl~~i~ 184 (346)
...||+++++++||++.. +...|++||++++++.........+. ..++.+++.||++++..+ .++++|+.+.....
T Consensus 132 ~P~~la~d~~g~lyv~d~--~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQR--DDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTEEEEEET--TTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCCEEEEec--CCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 347999999999999976 66799999999998876665544444 445556789999999776 99999998766555
Q ss_pred EE----e-c-CCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeee-ceeeEee--CCEEEEEecCC
Q 019103 185 EF----T-H-QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN-LNELEFI--KGEVWANVWQT 255 (346)
Q Consensus 185 ti----~-~-~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~-lNELE~~--~G~LyaNv~~s 255 (346)
.+ + . ..|.+.++++++++||++|..++|+.+|+++.+....-..+..|..-.+ .|.+.+. +|+||++....
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 55 2 2 2578888999889999999888999999998764221111122211111 1256666 58999999999
Q ss_pred CeEEEEeCCCCeEEEEEECC---chhhhhhhccCCCCceeeEEEEeCCCCEEEEecC-CCCcEEEEE
Q 019103 256 DCIARISHEDGVVLGWVLLP---NLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK-LWPKLYEIN 318 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~---~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK-~Wp~l~ev~ 318 (346)
+.|.++|++. ++.....-. +...... .......|+|||++++++ |||+.. .-..|+++.
T Consensus 289 ~~I~~~~~~g-~~~~~~g~~~~~g~~dg~~--~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 289 SSVYKITPDG-ECEWFCGSATQKTVQDGLR--EEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLD 351 (409)
T ss_dssp TEEEEECTTC-CEEEEEECTTCCSCBCEEG--GGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEE
T ss_pred CEEEEEecCC-CEEEEEeCCCCCCcCCCcc--cccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEE
Confidence 9999999864 443333221 0000000 001235799999999987 999988 778888887
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.8e-13 Score=124.23 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=129.2
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCC---CcEEEE-Eec--
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNN---LNKLEE-FTH-- 188 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~t---l~~i~t-i~~-- 188 (346)
.|+.+++ ..|+++|++++++...++.... ++|++.+ +++||.++..+++|+++|.++ +....+ ++.
T Consensus 3 ~ll~~~~----~~I~~i~~~~~~~~~~~~~~~~--p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR----HEVRKMTLDRSEYTSLIPNLRN--VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB----SSEEEEETTSCCCEEEECSCSS--EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC----CeEEEEECCCcceEehhcCCCc--eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 4677765 4899999999987766654344 5777776 589999999999999999886 122222 332
Q ss_pred CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCC-CeEEEEeCC
Q 019103 189 QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQT-DCIARISHE 264 (346)
Q Consensus 189 ~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~s-n~I~vID~~ 264 (346)
..|+|.++++.++.||++| +.+.|.++|++.......+.. ....| +.+.++ +|+||++.|.. +.|.++|++
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~P----~~iavdp~~g~ly~~d~~~~~~I~~~~~d 151 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKP----RAIVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCE----EEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC-CCCCc----ceEEeCCCCCEEEEEccCCCCeEEEEcCC
Confidence 2589989988899999999 588999999876443322221 22234 456665 78999999986 799999985
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
|+....+-.. ....|||||+|+++++||++...-.+|+.+.+.
T Consensus 152 -G~~~~~~~~~------------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 152 -GVDIYSLVTE------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp -SCCEEEEECS------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred -CCCeEEEEEC------------CCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 4433333111 124799999999999999999888899988764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-13 Score=118.96 Aligned_cols=191 Identities=12% Similarity=0.113 Sum_probs=137.5
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-----CCeeEEEEEEe--CCEEEEEEee-CCEEEEEEC
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-----GSYFGEGLTLL--GEKLFQVTWL-QKTGFIYDQ 177 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-----~~~FgeGit~~--g~~LY~ltw~-~~~v~V~D~ 177 (346)
...++++++++.||++.. +...|.+||++ |+.+..+... ......+++++ +++||++++. ++.+.++|
T Consensus 31 ~p~~v~~~~~g~l~v~~~--~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d- 106 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADT--NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN- 106 (286)
T ss_dssp CEEEEEECTTCCEEEEEG--GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred CCceEEECCCCCEEEEEC--CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence 347999999999999965 45699999988 6666666431 11245778883 6899999975 89999999
Q ss_pred CCCcEEEEEecC---CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEe
Q 019103 178 NNLNKLEEFTHQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (346)
Q Consensus 178 ~tl~~i~ti~~~---~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv 252 (346)
.+.+.+.++..+ .|.+..+++||+ +|+++ +++.|+++|+. .+.+.++..... ...++.+.+. +|++|++.
T Consensus 107 ~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 107 QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKH---LEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTT---CSSEEEEEECSSSEEEEEE
T ss_pred CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCc---cCCcEEEEECCCCCEEEEE
Confidence 678888888642 356666777775 88887 57899999975 566655544221 1123446665 68999999
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC-cEEEEE
Q 019103 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP-KLYEIN 318 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp-~l~ev~ 318 (346)
...+.|.++|+ +|+.+..+...+ ....|+|||+++++ ++||++..-. .|+...
T Consensus 182 ~~~~~i~~~~~-~g~~~~~~~~~g-----------~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 182 NRAHCVKVFNY-EGQYLRQIGGEG-----------ITNYPIGVGINSNG-EILIADNHNNFNLTIFT 235 (286)
T ss_dssp GGGTEEEEEET-TCCEEEEESCTT-----------TSCSEEEEEECTTC-CEEEEECSSSCEEEEEC
T ss_pred CCCCEEEEEcC-CCCEEEEEccCC-----------ccCCCcEEEECCCC-CEEEEeCCCCEEEEEEC
Confidence 98999999998 566666663211 12468999999987 6888876554 666553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-12 Score=119.95 Aligned_cols=205 Identities=12% Similarity=0.151 Sum_probs=139.3
Q ss_pred cceeEEEecCCEEEEEcCCC--CCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEe-CCEEEEEEee------CCEEEEE
Q 019103 106 FTQGLLYAENDTLFESTGLY--GRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLL-GEKLFQVTWL------QKTGFIY 175 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGly--g~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~-g~~LY~ltw~------~~~v~V~ 175 (346)
...+++++++|+||+++... +...|.+||++++++..... ........+++.+ ++++|+++.. .+.++++
T Consensus 88 ~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~ 167 (333)
T 2dg1_A 88 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV 167 (333)
T ss_dssp SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEE
Confidence 34799999999999987521 12589999999998754432 2222234556665 3679999875 4789999
Q ss_pred ECCCCcEEEEEec-CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCC-CcEEEE----EEeccCCeeeeeceeeEee-CCE
Q 019103 176 DQNNLNKLEEFTH-QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQT-LKVIRK----DIVRYKGREVRNLNELEFI-KGE 247 (346)
Q Consensus 176 D~~tl~~i~ti~~-~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T-~kvi~~----I~V~~~G~pv~~lNELE~~-~G~ 247 (346)
|+++.+...-... ..+.+..+++||+.||+++ +.+.|+++|+++ .+.... +.....+. ..++.+.+. +|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d~~G~ 245 (333)
T 2dg1_A 168 SPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCIDSDDN 245 (333)
T ss_dssp CTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEBTTCC
T ss_pred eCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC--CCCCceEECCCCC
Confidence 9887654432222 2467788899999999987 578999999864 332221 22111110 122335555 689
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC-----CCcEEEEEEe
Q 019103 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL-----WPKLYEINLR 320 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~-----Wp~l~ev~l~ 320 (346)
+|+..+..+.|.++|+ +|+.+..+.++.-.. + ....+.++|++|++++|||++.. ...||+|++.
T Consensus 246 l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~-----g--~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE-----G--HMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EEEEEETTTEEEEECT-TSCEEEEEECTTGGG-----T--CSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EEEEEcCCCEEEEECC-CCCEEEEEEcCCCcc-----c--cccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 9999988899999999 688888886532100 0 01257899999999999998776 3589999864
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-13 Score=120.49 Aligned_cols=211 Identities=9% Similarity=0.031 Sum_probs=144.3
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEEC---CCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVAL---ETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl---~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw 167 (346)
+.+.+.+++....+ .++.+++|++ ||++.. +++.|.+||+ .+++....+.....+.+..++.+++.||++..
T Consensus 73 ~~~~~~~~~~~~~~--~~~~~s~dg~~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 148 (343)
T 1ri6_A 73 ALTFAAESALPGSL--THISTDHQGQFVFVGSY--NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL 148 (343)
T ss_dssp CEEEEEEEECSSCC--SEEEECTTSSEEEEEET--TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred ceeeccccccCCCC--cEEEEcCCCCEEEEEec--CCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecC
Confidence 45667777764444 7999999985 777765 5678999999 44555666555555555555666789999998
Q ss_pred eCCEEEEEECCC-CcEEE----EEec--C-CCceeEEeeCCCEEEEEC-CCCeEEEEeCC--CCcE--EEEEEeccCC-e
Q 019103 168 LQKTGFIYDQNN-LNKLE----EFTH--Q-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--TLKV--IRKDIVRYKG-R 233 (346)
Q Consensus 168 ~~~~v~V~D~~t-l~~i~----ti~~--~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~--T~kv--i~~I~V~~~G-~ 233 (346)
.++.+.++|..+ .+... .+.. + .+.+..+++||++||+++ .++.|.++|.. +.+. ...+.....+ .
T Consensus 149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (343)
T 1ri6_A 149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS 228 (343)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccc
Confidence 899999999887 55433 2332 2 355677899999999987 68899999984 4443 3333321111 0
Q ss_pred eeeeceeeEee-CC-EEEEEecCCCeEEEEeCC----CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 234 EVRNLNELEFI-KG-EVWANVWQTDCIARISHE----DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 234 pv~~lNELE~~-~G-~LyaNv~~sn~I~vID~~----TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
.......+.+. +| +||+.....+.|.++|.+ +.+.+..+... . .+.+++|+|+++.||++
T Consensus 229 ~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-------------~-~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 229 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-------------T-QPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-------------S-SCCCEEECTTSSEEEEE
T ss_pred ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-------------C-ccceEEECCCCCEEEEe
Confidence 11122235555 34 899988888999999988 34555555431 1 26889999999999999
Q ss_pred cCCCCcEEEEEEe
Q 019103 308 GKLWPKLYEINLR 320 (346)
Q Consensus 308 GK~Wp~l~ev~l~ 320 (346)
+...+.+...++.
T Consensus 295 ~~~~~~v~v~~~d 307 (343)
T 1ri6_A 295 GQKSHHISVYEIV 307 (343)
T ss_dssp CTTTCEEEEEEEE
T ss_pred cCCCCeEEEEEEc
Confidence 9776766655443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-12 Score=116.50 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=136.1
Q ss_pred cceeEEEe-cCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEE
Q 019103 106 FTQGLLYA-ENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 106 FTqGL~~~-~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
...+++++ ++++||+++.. +...|.+|| .+|+.+..+..+......+++.+. +++|+++..++.+.++|+ +.+.+
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~-~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 154 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERS-PTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVL 154 (286)
T ss_dssp SEEEEEEETTTTEEEEEECG-GGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEE
T ss_pred CceEEEEEcCCCeEEEEcCC-CCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEE
Confidence 45799994 78899999741 257999999 678887777655433456777753 579999999999999996 46777
Q ss_pred EEEecC----CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCC-
Q 019103 184 EEFTHQ----MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTD- 256 (346)
Q Consensus 184 ~ti~~~----~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn- 256 (346)
.++... .|.+..+++||+ +|++| +++.|+++|+. .+.+.++.. .|. ...++.+.+. +|+|||+.+..+
T Consensus 155 ~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~--~g~-~~~p~~i~~d~~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 155 HKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYE-GQYLRQIGG--EGI-TNYPIGVGINSNGEILIADNHNNF 229 (286)
T ss_dssp EEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETT-CCEEEEESC--TTT-SCSEEEEEECTTCCEEEEECSSSC
T ss_pred EEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCC-CCEEEEEcc--CCc-cCCCcEEEECCCCCEEEEeCCCCE
Confidence 777531 355666667665 99988 58899999985 455555433 221 1123346555 689999998887
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.|.++|+ +|+.+..+.... ....|.+||++|++ ++|||+. ..+|+..++
T Consensus 230 ~i~~~~~-~g~~~~~~~~~~-----------~~~~~~~i~~~~~g-~l~vs~~-~~~v~v~~~ 278 (286)
T 1q7f_A 230 NLTIFTQ-DGQLISALESKV-----------KHAQCFDVALMDDG-SVVLASK-DYRLYIYRY 278 (286)
T ss_dssp EEEEECT-TSCEEEEEEESS-----------CCSCEEEEEEETTT-EEEEEET-TTEEEEEEC
T ss_pred EEEEECC-CCCEEEEEcccC-----------CCCcceeEEECCCC-cEEEECC-CCeEEEEEc
Confidence 9999996 577777775411 12358899999987 5999975 466665554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-12 Score=118.24 Aligned_cols=210 Identities=10% Similarity=0.017 Sum_probs=136.7
Q ss_pred eEEEEEE-ecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECC-CCcE--EEEeccCC-C-------eeEEEEEE--
Q 019103 93 IQVVNEF-PHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALE-TGKV--EAINQMEG-S-------YFGEGLTL-- 157 (346)
Q Consensus 93 ~~Vv~t~-phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~-Tgkv--~~~~~l~~-~-------~FgeGit~-- 157 (346)
.+.+.++ .+...+ .++++++||+ ||+++. ++..|.+||++ +|+. +..+.... . ....+++.
T Consensus 75 ~~~~~~~~~~~~~p--~~~a~spdg~~l~~~~~--~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp 150 (347)
T 3hfq_A 75 AHKLNTVVAPGTPP--AYVAVDEARQLVYSANY--HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP 150 (347)
T ss_dssp EEEEEEEEEESCCC--SEEEEETTTTEEEEEET--TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT
T ss_pred EEEeeeeecCCCCC--EEEEECCCCCEEEEEeC--CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC
Confidence 3455553 344455 6999999985 887764 55799999985 4443 33333321 1 12333444
Q ss_pred eCCEEEEEEeeCCEEEEEECC-CCcE--EEEEec--C-CCceeEEeeCCCEEEEEC-CCCeEEEEeCC--CCcEE--EEE
Q 019103 158 LGEKLFQVTWLQKTGFIYDQN-NLNK--LEEFTH--Q-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--TLKVI--RKD 226 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~-tl~~--i~ti~~--~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~--T~kvi--~~I 226 (346)
+++ +|+++..++.+.++|.+ +++. +..+.. + .|.+..++|||++||+++ +++.|.++|.. +.+.. ..+
T Consensus 151 dg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~ 229 (347)
T 3hfq_A 151 DNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV 229 (347)
T ss_dssp TSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE
T ss_pred CCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeee
Confidence 566 99999999999999988 4443 333333 2 356678999999999976 68888887754 45543 233
Q ss_pred EeccCCe-eeeeceeeEee-CC-EEEEEecCCCeEEEEeCC---CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCC
Q 019103 227 IVRYKGR-EVRNLNELEFI-KG-EVWANVWQTDCIARISHE---DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSN 300 (346)
Q Consensus 227 ~V~~~G~-pv~~lNELE~~-~G-~LyaNv~~sn~I~vID~~---TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~ 300 (346)
.....+. .....+.+.+. || +||+.....+.|.++|.+ +.+.+..+... +..|.++||+|+
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------------~~~~~~~~~spd 296 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-------------GDFPRDFDLDPT 296 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-------------SSCCCEEEECTT
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-------------CCCcCeEEECCC
Confidence 3221110 00123345555 45 699998889999999987 33555555431 235789999999
Q ss_pred CCEEEEecCCCCcEEEEEEe
Q 019103 301 RNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 301 ~~~LfVTGK~Wp~l~ev~l~ 320 (346)
++.|||++..-+.+...++.
T Consensus 297 g~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 297 EAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEcCCCcEEEEEEe
Confidence 99999999887776655543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-12 Score=112.32 Aligned_cols=189 Identities=13% Similarity=0.076 Sum_probs=134.6
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
....+++++++|.+|+++. +...|.++|++ |++. .+.++ ......+++.+ ++++|+++..++.++++|++ .+.
T Consensus 62 ~~~~~i~~~~~g~l~v~~~--~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTEN--GANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp CCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CcceeEEECCCCCEEEEec--CCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence 4457999999999999976 56699999999 8764 34433 22345677876 57899999989999999987 555
Q ss_pred EEEEec--C--CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCC
Q 019103 183 LEEFTH--Q--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTD 256 (346)
Q Consensus 183 i~ti~~--~--~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn 256 (346)
. ++.. . .|.+..++++|+ ||+++ +++.|+.+|+ +.+... +...... ..++.+.+. +|.||+.....+
T Consensus 137 ~-~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~---~~~~~i~~d~~g~l~v~~~~~~ 209 (300)
T 2qc5_A 137 Y-EYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNA---AAPVGITSGNDGALWFVEIMGN 209 (300)
T ss_dssp E-EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTT---CCEEEEEECTTSSEEEEETTTT
T ss_pred E-EccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCC---CCcceEEECCCCCEEEEccCCC
Confidence 4 3332 1 345555666776 88887 5789999999 666553 4432211 123345555 689999998889
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.|.++|+ +|++... .++. ....|.+|+++++++ +||+...-..|+.+..
T Consensus 210 ~i~~~~~-~g~~~~~-~~~~-----------~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 210 KIGRITT-TGEISEY-DIPT-----------PNARPHAITAGKNSE-IWFTEWGANQIGRITN 258 (300)
T ss_dssp EEEEECT-TCCEEEE-ECSS-----------TTCCEEEEEECSTTC-EEEEETTTTEEEEECT
T ss_pred EEEEEcC-CCcEEEE-ECCC-----------CCCCceEEEECCCCC-EEEeccCCCeEEEECC
Confidence 9999999 7876553 2211 124689999999876 9999877788887753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-12 Score=118.68 Aligned_cols=212 Identities=11% Similarity=0.094 Sum_probs=136.8
Q ss_pred eEEEEEEecCCCCcceeEEEecCCE-EEEEcCCC-CCCeEEEEEC--CCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEe
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLY-GRSSVRRVAL--ETGKVEAINQME-GSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGly-g~s~V~~iDl--~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw 167 (346)
++.+... +...+ .+++++|||+ ||.++... +...|.+|++ ++|++....... ......+++.+++.||++++
T Consensus 41 ~~~~~~~-~~~~p--~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~ 117 (361)
T 3scy_A 41 SLPLSDA-EVANP--SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANY 117 (361)
T ss_dssp EEEEEEE-ECSCC--CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEET
T ss_pred EEEeecc-cCCCC--ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEEC
Confidence 4455555 55566 6899999985 77775521 2358877655 457654333222 12234567778889999999
Q ss_pred eCCEEEEEECCCCcEEEEE----ecC--C----------CceeEEeeCCCEEEEEC-CCCeEEEEeCC--CC----c-EE
Q 019103 168 LQKTGFIYDQNNLNKLEEF----THQ--M----------KDGWGLATDGKVLFGSD-GSSMLYQIDPQ--TL----K-VI 223 (346)
Q Consensus 168 ~~~~v~V~D~~tl~~i~ti----~~~--~----------peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~--T~----k-vi 223 (346)
.++.+.++|.++...+.++ ... . +.+..++|||++||+++ +++.|.++|.. +. + +.
T Consensus 118 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 118 SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 9999999998754444332 211 1 14478899999999988 68888888644 32 2 21
Q ss_pred -----EEEEeccCCeeeeeceeeEee-CC-EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEE
Q 019103 224 -----RKDIVRYKGREVRNLNELEFI-KG-EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIA 296 (346)
Q Consensus 224 -----~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA 296 (346)
..+.......|. .+.+. || +||+.....+.|.++|.++|++...-.+..+. .....+.+|+
T Consensus 198 ~~~~~~~~~~~~~~~~~----~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~--------~~~~~~~~i~ 265 (361)
T 3scy_A 198 TKGTPEAFKVAPGSGPR----HLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT--------VNAQGSGDIH 265 (361)
T ss_dssp EEEEEEEEECCTTCCEE----EEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS--------SCCCCEEEEE
T ss_pred ecccccceecCCCCCCe----EEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC--------CCCCCcccEE
Confidence 233332222332 35554 45 79999988999999999999764333221111 1123568999
Q ss_pred EeCCCCEEEEecCC-CCcEEEEEE
Q 019103 297 WDSNRNRIFVTGKL-WPKLYEINL 319 (346)
Q Consensus 297 ~d~~~~~LfVTGK~-Wp~l~ev~l 319 (346)
|+|++++||+++.. -+.+.-.++
T Consensus 266 ~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 266 LSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEEE
T ss_pred ECCCCCEEEEECCCCCCEEEEEEE
Confidence 99999999999987 666555444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=127.13 Aligned_cols=182 Identities=13% Similarity=0.068 Sum_probs=134.0
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEEecC--C
Q 019103 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--M 190 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~ 190 (346)
...|+.+.. +.|+++|++++++...+.-... ++|++.+ +++||.++..+++|+++|++.......+..+ .
T Consensus 87 ~~~l~~~~~----~~I~~i~~~~~~~~~~~~~~~~--~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~ 160 (386)
T 3v65_B 87 EPVLLFANR----IDIRQVLPHRSEYTLLLNNLEN--AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 160 (386)
T ss_dssp CCEEEEECB----SCEEEECTTSCCCEEEECSCSC--EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSC
T ss_pred cceeEeecC----ccceeeccCCCcEEEEecCCCc--cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCC
Confidence 346777754 5899999998876655543333 5677776 5899999999999999999876544444432 6
Q ss_pred CceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCC-CeEEEEeCCCC
Q 019103 191 KDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQT-DCIARISHEDG 266 (346)
Q Consensus 191 peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~s-n~I~vID~~TG 266 (346)
|+|.++++.++.||++| +.+.|.++|+...... .+.-.. +..++.+... +|+||++.|.. +.|.++|++..
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~-~l~~~~----l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK-VLLWQS----LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE-EEECSS----CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE-EeecCC----CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 89999999999999999 5889999998754322 222211 2233556665 78999999988 89999998754
Q ss_pred eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 267 VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 267 ~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
.....+.. ....|||||+|+++++||++...-.+|+.+.+.
T Consensus 236 ~~~~~~~~-------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 236 GRRIIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp SCEEEECS-------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CcEEEEEC-------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 43332211 123689999999999999998888889988764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-12 Score=124.09 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=132.8
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEEec--CC
Q 019103 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTH--QM 190 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~--~~ 190 (346)
+..|+.++. +.|+++|++..+....+.-... ++|++.+ +++||.++..+++|+.+|++......-+.. ..
T Consensus 44 ~~~ll~~~~----~~I~~i~~~g~~~~~~~~~~~~--~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~ 117 (349)
T 3v64_C 44 EPVLLFANR----IDIRQVLPHRSEYTLLLNNLEN--AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES 117 (349)
T ss_dssp CCEEEEECB----SCEEEECTTSCCEEEEECSCSC--EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSC
T ss_pred CceeEeecc----cceEEEeCCCCeeEEeecCCCc--eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCC
Confidence 346777755 4799999998877655543344 4667765 589999999999999999987654443433 35
Q ss_pred CceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCC-CeEEEEeCCCC
Q 019103 191 KDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQT-DCIARISHEDG 266 (346)
Q Consensus 191 peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~s-n~I~vID~~TG 266 (346)
|+|+++++.++.||++| +.+.|.++|++.... ..+.-.. +..+|.+.+. +|.||++.|.. +.|.++|++..
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~----l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQS----LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECTT----CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCC----CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 89999999999999999 578999999875432 2222222 2233556666 78999999998 89999998754
Q ss_pred eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 267 VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 267 ~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
.....+. .....|||||+|+++++||++...-++|+.+.+.
T Consensus 193 ~~~~~~~-------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 193 GRRIIAD-------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp SCEESCC-------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CcEEEEE-------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 3221111 1234799999999999999998888889988764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-11 Score=110.01 Aligned_cols=190 Identities=13% Similarity=0.132 Sum_probs=132.4
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
....+|+++++|.+|+++. +...|.++|++ +++.............+++.+ ++.+|+++..++.++++|++ .+ .
T Consensus 15 ~~~~~i~~d~~g~l~v~~~--~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~ 89 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQH--KANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI-I 89 (299)
T ss_dssp CCEEEEEECTTSCEEEEET--TTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E
T ss_pred CCccceEECCCCCEEEEec--CCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-E
Confidence 3457999999999999976 55699999999 876543321123345678875 46899999989999999986 33 3
Q ss_pred EEEecC----CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCe
Q 019103 184 EEFTHQ----MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDC 257 (346)
Q Consensus 184 ~ti~~~----~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~ 257 (346)
..+..+ .+.+..+++|| .||+++ +.+.|+++|+ +.+.. .+.....+ ..++.+.+. +|++|+..+..+.
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~---~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIR-EYELPNKG---SYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-EEECSSTT---CCEEEEEECTTSCEEEEETTTTE
T ss_pred EEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEE-EecCCCCC---CCCceEEEcCCCCEEEEeCCCCE
Confidence 444431 34444455555 688876 5789999999 66654 23322111 133456665 6899999888899
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
|.++|+ +|++.. +.+.. ....+++|+++++++ +||+...-..|+.+..
T Consensus 164 i~~~~~-~g~~~~-~~~~~-----------~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 164 IGRITE-SGDITE-FKIPT-----------PASGPVGITKGNDDA-LWFVEIIGNKIGRITT 211 (299)
T ss_dssp EEEECT-TCCEEE-EECSS-----------TTCCEEEEEECTTSS-EEEEETTTTEEEEECT
T ss_pred EEEEcC-CCcEEE-eeCCC-----------CCCcceeEEECCCCC-EEEEccCCceEEEECC
Confidence 999999 888764 33311 123689999999866 8998877778887754
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-13 Score=118.83 Aligned_cols=189 Identities=14% Similarity=0.230 Sum_probs=129.9
Q ss_pred cceeEEEecCCEEEE-EcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEE
Q 019103 106 FTQGLLYAENDTLFE-STGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 106 FTqGL~~~~d~~Lye-StGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
...+++++++|+||+ +.. +...|.++|..+++... ..........+++.+. ++||+++. ++.++++|+++...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~- 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEG--MYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ- 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECS--SSCEEEEECC-----EE-CCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-
T ss_pred CccceEECCCCCEEEEccC--CCCcEEEecCCCcccce-EeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-
Confidence 447999999999999 755 45699999988775432 2233222346677763 56999998 89999999887544
Q ss_pred EEEecC---CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeE
Q 019103 184 EEFTHQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCI 258 (346)
Q Consensus 184 ~ti~~~---~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I 258 (346)
..+... .|.+..+++||+ ||++| +.+.|+++|+.+.+..... .. ....++.+.+. +|++|++....+.|
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~---~~--~~~~p~~i~~~~~g~l~v~~~~~~~i 173 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLP---FT--GLNDPDGVAVDNSGNVYVTDTDNNRV 173 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECC---CC--SCCSCCCEEECTTCCEEEEEGGGTEE
T ss_pred eeeecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeec---cc--cCCCceeEEEeCCCCEEEEECCCCEE
Confidence 334321 345556666665 99988 5789999998876543221 11 11234556666 68999999888999
Q ss_pred EEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 259 ARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 259 ~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.++|++++.+.... . .....|+|||+++++ ++||+...-..|+.+..
T Consensus 174 ~~~~~~~~~~~~~~-~------------~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 174 VKLEAESNNQVVLP-F------------TDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp EEECTTTCCEEECC-C------------SSCCSEEEEEECTTC-CEEEEETTTSCEEEECT
T ss_pred EEEecCCCceEeec-c------------cCCCCceEEEECCCC-CEEEEECCCCcEEEEcC
Confidence 99999988764321 1 112468999999987 89999888888888765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-11 Score=109.37 Aligned_cols=190 Identities=12% Similarity=0.106 Sum_probs=131.0
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
....+++++++|+||+++. +...|.++|+ +|++.............+++.+ ++++|++++.++.++++|+ +.+..
T Consensus 99 ~~~~~i~~~~~g~l~v~~~--~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 174 (299)
T 2z2n_A 99 SAPYGITEGPNGDIWFTEM--NGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT 174 (299)
T ss_dssp CCEEEEEECTTSCEEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred CCceeeEECCCCCEEEEec--CCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence 3457999999999999875 4569999999 7776543322233456778887 4689999999999999999 66654
Q ss_pred EE-EecC--CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeE
Q 019103 184 EE-FTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCI 258 (346)
Q Consensus 184 ~t-i~~~--~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I 258 (346)
.. ++.. .+.+..+++||+ ||+++ +++.|+++|+ +.++. .+..... ...+..+.+. +|.||+..+..+.|
T Consensus 175 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i 248 (299)
T 2z2n_A 175 EFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEIT-EFKIPTP---NARPHAITAGAGIDLWFTEWGANKI 248 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEE-EEECSST---TCCEEEEEECSTTCEEEEETTTTEE
T ss_pred EeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEE-EEECCCC---CCCceeEEECCCCCEEEeccCCceE
Confidence 32 2222 245555666665 88877 5889999999 77754 3433321 1123345555 68999999889999
Q ss_pred EEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 259 ARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 259 ~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
.++|+ +|++. .+.++. ....+.+|++ ++ +++||+.. .+.+++++..
T Consensus 249 ~~~d~-~g~~~-~~~~~~-----------~~~~~~~i~~-~~-g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 249 GRLTS-NNIIE-EYPIQI-----------KSAEPHGICF-DG-ETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp EEEET-TTEEE-EEECSS-----------SSCCEEEEEE-CS-SCEEEEET-TTEEEEEEEC
T ss_pred EEECC-CCceE-EEeCCC-----------CCCccceEEe-cC-CCEEEEec-CCcEEEEEcC
Confidence 99999 67653 443311 1236899999 55 56787765 5788887653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-12 Score=119.01 Aligned_cols=213 Identities=8% Similarity=0.069 Sum_probs=135.8
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECC-CCcEEEEec--cCCCeeEEEEEEeCCEEEE--E
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALE-TGKVEAINQ--MEGSYFGEGLTLLGEKLFQ--V 165 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~-Tgkv~~~~~--l~~~~FgeGit~~g~~LY~--l 165 (346)
+++.+...+.....-..++++++||+ ||.++. + .|.+||++ +|++..... .+..+....++++|++||+ +
T Consensus 27 ~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~--~--~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~ 102 (365)
T 1jof_A 27 TCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM--K--KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAA 102 (365)
T ss_dssp EEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB--T--EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEEC
T ss_pred CEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc--c--eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEe
Confidence 34555555533222236999999995 777654 3 89999998 898765433 2233333334445665444 4
Q ss_pred E------e------eCCEEEEEECC-CCcEEEEEec-----C-CCceeEEeeCCCEEEEEC-CCCeEEEEeCC-CCcEE-
Q 019103 166 T------W------LQKTGFIYDQN-NLNKLEEFTH-----Q-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQ-TLKVI- 223 (346)
Q Consensus 166 t------w------~~~~v~V~D~~-tl~~i~ti~~-----~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~-T~kvi- 223 (346)
+ + .++.+.++|.+ +++...++.. + .+.+..++|||++||++| ++++|+++|.+ +++..
T Consensus 103 ~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~ 182 (365)
T 1jof_A 103 KQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL 182 (365)
T ss_dssp SSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred cCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE
Confidence 3 2 57889999986 5666655542 2 467778999999999988 68999999987 77653
Q ss_pred -EEEEecc-CCeeeeeceeeEee-CC-EEEEEecCCCeEEEE--eCCCCeEEE---EEECCchhhhhhhccCCCCc----
Q 019103 224 -RKDIVRY-KGREVRNLNELEFI-KG-EVWANVWQTDCIARI--SHEDGVVLG---WVLLPNLRERLVAAGYNGID---- 290 (346)
Q Consensus 224 -~~I~V~~-~G~pv~~lNELE~~-~G-~LyaNv~~sn~I~vI--D~~TG~Vv~---~I~l~~l~~~~~~~~~~~~~---- 290 (346)
..+.+.. ...|.+ +.+. || +||+.++.++.|.++ |+++|+... .+.. +.. +.....
T Consensus 183 ~~~~~~~~~g~~p~~----~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~--~~~-----~~~g~~~~~~ 251 (365)
T 1jof_A 183 VGSVDAPDPGDHPRW----VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL--IPP-----GIPDRDPETG 251 (365)
T ss_dssp EEEEECSSTTCCEEE----EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES--SCT-----TCCCBCTTTS
T ss_pred eeeEecCCCCCCCCE----eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc--CCC-----CcCCcccccc
Confidence 3344321 122432 5454 45 899999888888886 566888643 3432 110 000111
Q ss_pred ---eeeEEE-EeCCCCEEEEecCCCC-----cEEEEEE
Q 019103 291 ---VLNGIA-WDSNRNRIFVTGKLWP-----KLYEINL 319 (346)
Q Consensus 291 ---vlNGIA-~d~~~~~LfVTGK~Wp-----~l~ev~l 319 (346)
.+.+|+ ++|++++||+++...+ +|...++
T Consensus 252 ~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 252 KGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred cccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 589999 9999999999986554 5544444
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-12 Score=116.44 Aligned_cols=206 Identities=10% Similarity=0.033 Sum_probs=133.0
Q ss_pred eEEEEEEec-CCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe----cc-C----------CCeeEEEEE
Q 019103 93 IQVVNEFPH-DPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN----QM-E----------GSYFGEGLT 156 (346)
Q Consensus 93 ~~Vv~t~ph-d~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~----~l-~----------~~~FgeGit 156 (346)
++.+.+.+. ...+ .++.+ .++.||+++. +++.|.+||+++...+..+ .. + +.+.+..++
T Consensus 89 ~~~~~~~~~~~~~p--~~~~~-dg~~l~~~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s 163 (361)
T 3scy_A 89 LHLLNTQKTMGADP--CYLTT-NGKNIVTANY--SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT 163 (361)
T ss_dssp EEEEEEEECSSSCE--EEEEE-CSSEEEEEET--TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred EEEeeEeccCCCCc--EEEEE-CCCEEEEEEC--CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC
Confidence 456666663 3334 68888 3346888865 6679999999764322211 11 1 111233344
Q ss_pred EeCCEEEEEEeeCCEEEEEECCCCc-------E--E---EEEec--C-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCC
Q 019103 157 LLGEKLFQVTWLQKTGFIYDQNNLN-------K--L---EEFTH--Q-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTL 220 (346)
Q Consensus 157 ~~g~~LY~ltw~~~~v~V~D~~tl~-------~--i---~ti~~--~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~ 220 (346)
++++.||+++..++.+.+||.+... + . ..+.. + .|.+..+++||++||+++ ++++|.++|.++.
T Consensus 164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 4677899999999999999765332 1 1 22222 2 456778899999999988 6899999998877
Q ss_pred cEE--EEEEeccCCeeeeeceeeEee-CC-EEEEEecC-CCeEEEEe--CCCCe--EEEEEECCchhhhhhhccCCCCce
Q 019103 221 KVI--RKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ-TDCIARIS--HEDGV--VLGWVLLPNLRERLVAAGYNGIDV 291 (346)
Q Consensus 221 kvi--~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~-sn~I~vID--~~TG~--Vv~~I~l~~l~~~~~~~~~~~~~v 291 (346)
+.. .++.....+ ....+.+.+. || +||+.+.. .+.|.+.| +++|+ .+..+.. +..
T Consensus 244 ~~~~~~~~~~~~~~--~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--------------g~~ 307 (361)
T 3scy_A 244 MLDEIQTVAADTVN--AQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--------------GIH 307 (361)
T ss_dssp EEEEEEEEESCSSC--CCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--------------SSC
T ss_pred ceEEeEEEecCCCC--CCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--------------CCC
Confidence 653 333332211 1122345554 44 79999887 78888855 46777 4444432 225
Q ss_pred eeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 292 LNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 292 lNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
|.++||+|+++.||+++..-+.+...++
T Consensus 308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp CCEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCCEEEEEE
Confidence 6899999999999999987776655444
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-12 Score=113.36 Aligned_cols=188 Identities=17% Similarity=0.234 Sum_probs=130.8
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCe--eEEEEEEe-CCEEEEEEe--------------
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSY--FGEGLTLL-GEKLFQVTW-------------- 167 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~--FgeGit~~-g~~LY~ltw-------------- 167 (346)
...||+++++|+||+++. +...|.+||+++|++...... .... +..+++.+ .+++|+++.
T Consensus 70 ~~~~l~~~~dg~l~v~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~ 147 (296)
T 3e5z_A 70 HQNGHCLNKQGHLIACSH--GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE 147 (296)
T ss_dssp SEEEEEECTTCCEEEEET--TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC
T ss_pred CcceeeECCCCcEEEEec--CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc
Confidence 347999999999999976 567999999999987554322 1111 12345564 357999753
Q ss_pred ---eCCEEEEEECCCCcEEEEEec-CCCceeEEeeCCCEEEEEC-CCCeEEEEeCC-CCcE-EEEEEec-cCCeeeeece
Q 019103 168 ---LQKTGFIYDQNNLNKLEEFTH-QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ-TLKV-IRKDIVR-YKGREVRNLN 239 (346)
Q Consensus 168 ---~~~~v~V~D~~tl~~i~ti~~-~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~-T~kv-i~~I~V~-~~G~pv~~lN 239 (346)
..+.++.+|++ .+....... ..|.|..+++||+.| ++| +.+.|+++|.. ++++ ...-... ..+.| +
T Consensus 148 ~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p----~ 221 (296)
T 3e5z_A 148 MELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKT----D 221 (296)
T ss_dssp CCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCC----C
T ss_pred ccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCC----C
Confidence 14689999987 443322222 246888899999999 777 58899999976 5665 2211221 12233 2
Q ss_pred eeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEE-eCCCCEEEEecCCCCcEEEE
Q 019103 240 ELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAW-DSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 240 ELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~-d~~~~~LfVTGK~Wp~l~ev 317 (346)
-+.+. +|+||++. .+.|.++|++ |+++..+.++ .. ++.++| .|++++||||.. ..||++
T Consensus 222 ~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~------------~~--~~~~~f~~~d~~~L~v~t~--~~l~~~ 282 (296)
T 3e5z_A 222 GLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTP------------QT--TSNLCFGGPEGRTLYMTVS--TEFWSI 282 (296)
T ss_dssp SEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECS------------SC--CCEEEEESTTSCEEEEEET--TEEEEE
T ss_pred eEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECC------------CC--ceeEEEECCCCCEEEEEcC--CeEEEE
Confidence 35554 78999988 7899999997 8888888652 12 677999 589999999975 589988
Q ss_pred EEe
Q 019103 318 NLR 320 (346)
Q Consensus 318 ~l~ 320 (346)
++.
T Consensus 283 ~~~ 285 (296)
T 3e5z_A 283 ETN 285 (296)
T ss_dssp ECS
T ss_pred Ecc
Confidence 774
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.5e-13 Score=133.11 Aligned_cols=179 Identities=11% Similarity=0.065 Sum_probs=138.9
Q ss_pred CCCCCCeEEEEECCC-----CcEEEEeccCC-----CeeE---------EEEE--EeCCEEEEEEeeCCEEEEEECCCC-
Q 019103 123 GLYGRSSVRRVALET-----GKVEAINQMEG-----SYFG---------EGLT--LLGEKLFQVTWLQKTGFIYDQNNL- 180 (346)
Q Consensus 123 Glyg~s~V~~iDl~T-----gkv~~~~~l~~-----~~Fg---------eGit--~~g~~LY~ltw~~~~v~V~D~~tl- 180 (346)
+.++...|.+||++. |||+.+++++. +.|| .-.+ .++++||+..-.+++|+|||.++.
T Consensus 38 ~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p 117 (462)
T 2ece_A 38 GINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNP 117 (462)
T ss_dssp TCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCT
T ss_pred CCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCC
Confidence 335678999999998 99999999875 1222 1114 668899999999999999998877
Q ss_pred ---cEEEEEe-------cC--CCceeEEeeCCCEEEEEC-CC------CeEEEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019103 181 ---NKLEEFT-------HQ--MKDGWGLATDGKVLFGSD-GS------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 181 ---~~i~ti~-------~~--~peGwGLt~Dg~~LyvSd-Gs------~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
+++++|+ ++ .|.+...++|| +|||. |+ +.|.++|++|++++++++++.....+.+ .+
T Consensus 118 ~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y--d~ 193 (462)
T 2ece_A 118 REPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY--DF 193 (462)
T ss_dssp TSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC--CE
T ss_pred CCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc--eE
Confidence 8999993 23 46677788999 88865 54 7999999999999999998753222221 12
Q ss_pred Ee--eCCEEEEEecC------------------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEE--eC
Q 019103 242 EF--IKGEVWANVWQ------------------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAW--DS 299 (346)
Q Consensus 242 E~--~~G~LyaNv~~------------------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~--d~ 299 (346)
-| ..+.+|++.|. .++|.++|.++++++.+|+++. .+..|.+|++ +|
T Consensus 194 ~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-----------~g~~P~~i~f~~~P 262 (462)
T 2ece_A 194 WWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-----------ENRMALELRPLHDP 262 (462)
T ss_dssp EEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-----------TEEEEEEEEECSST
T ss_pred EECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-----------CCCccceeEeeECC
Confidence 12 24578889874 8999999999999999998831 1236778877 99
Q ss_pred CCCEEEEecC-----CCCcEEE
Q 019103 300 NRNRIFVTGK-----LWPKLYE 316 (346)
Q Consensus 300 ~~~~LfVTGK-----~Wp~l~e 316 (346)
+++.+||++. +..+|+.
T Consensus 263 dg~~aYV~~e~~~~~Lss~V~v 284 (462)
T 2ece_A 263 TKLMGFINMVVSLKDLSSSIWL 284 (462)
T ss_dssp TCCEEEEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEEeeeccCCCceEEE
Confidence 9999999999 8888874
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-11 Score=114.76 Aligned_cols=197 Identities=11% Similarity=0.077 Sum_probs=133.6
Q ss_pred EecCCCCcceeEEEec-CCEEEEEcCCCCCCeEEEEECCC---CcE-EEEeccCCCeeEEEEEEe--CCEEEEEEeeCCE
Q 019103 99 FPHDPRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALET---GKV-EAINQMEGSYFGEGLTLL--GEKLFQVTWLQKT 171 (346)
Q Consensus 99 ~phd~~~FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~T---gkv-~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~ 171 (346)
++....+ .|+++++ +++||++.. +..+|.++|+++ ++. ...+.- .-...+|++++ ++.||+++...+.
T Consensus 26 ~~~~~~p--~g~~~d~~~~~ly~~D~--~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~p~glavd~~~~~ly~~d~~~~~ 100 (316)
T 1ijq_A 26 IPNLRNV--VALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGT 100 (316)
T ss_dssp ECSCSSE--EEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred hcCCCce--EEEEEEeCCCEEEEEEC--CCCcEEEEECCCCCCCcccEEEEeC-CCCCcCEEEEeecCCeEEEEECCCCE
Confidence 4444445 7999996 468999976 567999999987 222 222221 11234678875 6899999999999
Q ss_pred EEEEECCCCcEEEEEec--CCCceeEEeeCCCEEEEEC-CC-CeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--C
Q 019103 172 GFIYDQNNLNKLEEFTH--QMKDGWGLATDGKVLFGSD-GS-SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--K 245 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~--~~peGwGLt~Dg~~LyvSd-Gs-~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~ 245 (346)
+.++|.+......-+.. ..|.|.++++++++||++| +. ..|+.+|+.. +....+ +.. .+..+|.|.+. +
T Consensus 101 I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~-~~~---~~~~P~gla~d~~~ 175 (316)
T 1ijq_A 101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSL-VTE---NIQWPNGITLDLLS 175 (316)
T ss_dssp EEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEE-ECS---SCSCEEEEEEETTT
T ss_pred EEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEE-EEC---CCCCceEEEEeccC
Confidence 99999875433333332 3578888888999999999 54 7999999853 333222 211 23345667776 6
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 246 GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
++||++.+..+.|.++|.+.......+... .....|.|||++ ++++|+|...-.+|+.+.
T Consensus 176 ~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~-----------~~~~~P~giav~--~~~ly~~d~~~~~V~~~~ 235 (316)
T 1ijq_A 176 GRLYWVDSKLHSISSIDVNGGNRKTILEDE-----------KRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 235 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEEECT-----------TTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCeEEEEecCCCceEEEeecC-----------CccCCcEEEEEE--CCEEEEEECCCCeEEEEe
Confidence 899999999999999999754332222221 112368999997 479999987667888775
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-12 Score=126.29 Aligned_cols=208 Identities=14% Similarity=0.111 Sum_probs=139.6
Q ss_pred ceeEEEecC---CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe---------------------------------
Q 019103 107 TQGLLYAEN---DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY--------------------------------- 150 (346)
Q Consensus 107 TqGL~~~~d---~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~--------------------------------- 150 (346)
.+||+++++ +.||++.. + ..|++||+++|++.....-...+
T Consensus 141 P~gvavd~~s~~g~Lyv~D~--~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQ--R-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCEEEECTTTTTCEEEEECB--T-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CceEEEccccCCCEEEEEeC--C-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 469999974 79999976 3 79999999988875443211111
Q ss_pred -----------eEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEE-ecC---CCceeEEeeCCCEEEEEC-CCCeE
Q 019103 151 -----------FGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEF-THQ---MKDGWGLATDGKVLFGSD-GSSML 212 (346)
Q Consensus 151 -----------FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti-~~~---~peGwGLt~Dg~~LyvSd-Gs~~l 212 (346)
...|++++ ++.||++++.++.+++||+++++...++ ..+ .+.|.++++||++||++| +.++|
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 12334444 4678999988999999999888774443 332 234578889999999999 58899
Q ss_pred EEEeCC--CCcEEE-EEEecc---CCe--------eeeeceeeEe---------e-CCEEEEEecCCCeEEEEeCCCCeE
Q 019103 213 YQIDPQ--TLKVIR-KDIVRY---KGR--------EVRNLNELEF---------I-KGEVWANVWQTDCIARISHEDGVV 268 (346)
Q Consensus 213 ~vIDp~--T~kvi~-~I~V~~---~G~--------pv~~lNELE~---------~-~G~LyaNv~~sn~I~vID~~TG~V 268 (346)
+.+|.. +.+... .+.++. .|. .+..++.+.+ . +|.||++.+..++|.+||+ +|++
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v 376 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV 376 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE
Confidence 998854 433211 122222 111 1233445766 3 5789999999999999997 7876
Q ss_pred EEEEECCc-----hhhh-hhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 269 LGWVLLPN-----LRER-LVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 269 v~~I~l~~-----l~~~-~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
....-... .... +.. ......|.|||++|..+.|||+...-.+|.+|.+.
T Consensus 377 ~t~~G~g~~~~~G~~dG~~~~--~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 377 TTYAGRGNSREWGYVDGELRS--QALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEECCCTTCSSCCBCEETTT--TCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCccccCCCcccc--ccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 55442211 0000 000 11245699999998889999999988999998764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-12 Score=118.70 Aligned_cols=192 Identities=11% Similarity=0.089 Sum_probs=135.1
Q ss_pred eeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCC--CeeEEEEEEeC--CEEEEEEee-------------
Q 019103 108 QGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEG--SYFGEGLTLLG--EKLFQVTWL------------- 168 (346)
Q Consensus 108 qGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~--~~FgeGit~~g--~~LY~ltw~------------- 168 (346)
.||++++ +|+||++.. + ..|.++|++++++..... .+. -.+..+++.+. ++||++++.
T Consensus 83 ~gi~~~~~~g~l~v~d~--~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~ 159 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDC--Y-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD 159 (322)
T ss_dssp EEEEEETTTTEEEEEET--T-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred ceEEEcCCCCcEEEEEC--C-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence 6999996 789999965 2 359999999875432221 121 13467788864 689999865
Q ss_pred ----CCEEEEEECCCCcEEEEEec-CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcE--EEEEEeccCCeeeeecee
Q 019103 169 ----QKTGFIYDQNNLNKLEEFTH-QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKV--IRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 169 ----~~~v~V~D~~tl~~i~ti~~-~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kv--i~~I~V~~~G~pv~~lNE 240 (346)
.+.++++|+++.+....... ..|.|.++++||++||++| +.+.|+++|..+.+. ...+. ...| |- -
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~-~~~g-P~----g 233 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-PG----N 233 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEE-ECSS-EE----E
T ss_pred ccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEE-eCCC-CC----C
Confidence 36899999988765433322 3579999999999999998 578999999875321 11111 1223 43 3
Q ss_pred eEee-CCEEEEEecC----------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 241 LEFI-KGEVWANVWQ----------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 241 LE~~-~G~LyaNv~~----------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
+..+ +|.||++.+. .+.|.++|++ |+++..+..++-. ....+.+++.. +++||||+-
T Consensus 234 i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~---------~~~~~~~~~~~--~g~L~v~~~ 301 (322)
T 2fp8_A 234 IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPF---------AGEHFEQIQEH--DGLLYIGTL 301 (322)
T ss_dssp EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTT---------TTSCCCEEEEE--TTEEEEECS
T ss_pred eEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCC---------ccccceEEEEe--CCEEEEeec
Confidence 5444 6899999987 5789999995 9999999763210 02346777774 579999998
Q ss_pred CCCcEEEEEEe
Q 019103 310 LWPKLYEINLR 320 (346)
Q Consensus 310 ~Wp~l~ev~l~ 320 (346)
.-+.|..+++.
T Consensus 302 ~~~~i~~~~~~ 312 (322)
T 2fp8_A 302 FHGSVGILVYD 312 (322)
T ss_dssp SCSEEEEEEC-
T ss_pred CCCceEEEecc
Confidence 88999999875
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=116.28 Aligned_cols=189 Identities=14% Similarity=0.135 Sum_probs=132.3
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC---CeeEEEEEEe-CCEEEEEEee------CCEEEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG---SYFGEGLTLL-GEKLFQVTWL------QKTGFIYD 176 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~---~~FgeGit~~-g~~LY~ltw~------~~~v~V~D 176 (346)
..++.++++|++|+++. ..|.++|+++|++......+. .....++..+ .+++|+.+.. .+.++.+|
T Consensus 92 v~~i~~~~dg~l~v~~~----~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~ 167 (326)
T 2ghs_A 92 GSALAKISDSKQLIASD----DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA 167 (326)
T ss_dssp EEEEEEEETTEEEEEET----TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred ceEEEEeCCCeEEEEEC----CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence 47899999999999874 369999999999765444321 1233455554 3569998874 36899999
Q ss_pred CCCCcEEEEEec-CCCceeEEeeCCCEEEEEC-CCCeEEEEeCC--CC-cEE--EEE-Eec-cCCeeeeeceeeEee-CC
Q 019103 177 QNNLNKLEEFTH-QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ--TL-KVI--RKD-IVR-YKGREVRNLNELEFI-KG 246 (346)
Q Consensus 177 ~~tl~~i~ti~~-~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~--T~-kvi--~~I-~V~-~~G~pv~~lNELE~~-~G 246 (346)
+++...-... ..+.|..+++||+.||++| ..+.|+++|.. ++ ++. +.+ ... ..+.| +.+..+ +|
T Consensus 168 --~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p----~gi~~d~~G 241 (326)
T 2ghs_A 168 --KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM----DGSVCDAEG 241 (326)
T ss_dssp --TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE----EEEEECTTS
T ss_pred --CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCC----CeeEECCCC
Confidence 4543322221 2467888899999999988 47899999975 65 432 111 121 12333 335454 68
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEe-CCCCEEEEecCCC-------------C
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWD-SNRNRIFVTGKLW-------------P 312 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d-~~~~~LfVTGK~W-------------p 312 (346)
.||++.|..+.|.++|+ +|+++..+.++. ..+.++||+ +++++||||.-.- +
T Consensus 242 ~lwva~~~~~~v~~~d~-~g~~~~~i~~~~-------------~~~~~~af~g~d~~~L~vt~~~~~~~~~~~~~~p~~g 307 (326)
T 2ghs_A 242 HIWNARWGEGAVDRYDT-DGNHIARYEVPG-------------KQTTCPAFIGPDASRLLVTSAREHLDDDAITANPQHG 307 (326)
T ss_dssp CEEEEEETTTEEEEECT-TCCEEEEEECSC-------------SBEEEEEEESTTSCEEEEEEBCTTCCHHHHHHCTTTT
T ss_pred CEEEEEeCCCEEEEECC-CCCEEEEEECCC-------------CCcEEEEEecCCCCEEEEEecCCCCChhHhccCCCCc
Confidence 99999998899999999 788888886521 257899999 8999999986443 4
Q ss_pred cEEEEEE
Q 019103 313 KLYEINL 319 (346)
Q Consensus 313 ~l~ev~l 319 (346)
.+|++++
T Consensus 308 ~~~~~~~ 314 (326)
T 2ghs_A 308 LTFELGI 314 (326)
T ss_dssp CEEECSS
T ss_pred eEEEEeC
Confidence 6888874
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-12 Score=119.47 Aligned_cols=216 Identities=14% Similarity=0.085 Sum_probs=143.0
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCC--CeEEEEECCCCcEEEEecc-----CCCeeEEEEEEeC-CEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGR--SSVRRVALETGKVEAINQM-----EGSYFGEGLTLLG-EKLF 163 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~--s~V~~iDl~Tgkv~~~~~l-----~~~~FgeGit~~g-~~LY 163 (346)
.++++.++. .+..|++++++|++|++...++. .+|..+| +|++..-... ..-....|++++. ++||
T Consensus 8 ~~~~v~~~~----~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~ 81 (343)
T 2qe8_A 8 RLEVVAELS----LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVW 81 (343)
T ss_dssp CCEEEEEES----SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEEECSSSEEE
T ss_pred eeEEEEEcC----CCcceEEECCCCCEEEEeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEEEcCCCcEE
Confidence 578888877 34479999999999999654332 4888888 7875411100 1123467788875 7899
Q ss_pred EEEee-----CCEEEEEECCCCcEEEEEecC--------CCceeEEeeCCCEEEEECC----CCeEEEEeCCCCcEEEEE
Q 019103 164 QVTWL-----QKTGFIYDQNNLNKLEEFTHQ--------MKDGWGLATDGKVLFGSDG----SSMLYQIDPQTLKVIRKD 226 (346)
Q Consensus 164 ~ltw~-----~~~v~V~D~~tl~~i~ti~~~--------~peGwGLt~Dg~~LyvSdG----s~~l~vIDp~T~kvi~~I 226 (346)
+++.. .+++++||+++.++++++..+ .+.+..++++++.+|++|. ++.|+++|+++.+..+.+
T Consensus 82 v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 82 MLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp EEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred EEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 99976 689999999999999988752 2366778888889999984 679999999998876654
Q ss_pred Ee-----------ccCCeee-------------eeceeeEee-CC-EEEEEecCCCeEEEEeCCCCeEEEEEECCch--h
Q 019103 227 IV-----------RYKGREV-------------RNLNELEFI-KG-EVWANVWQTDCIARISHEDGVVLGWVLLPNL--R 278 (346)
Q Consensus 227 ~V-----------~~~G~pv-------------~~lNELE~~-~G-~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l--~ 278 (346)
.- ..+|+.+ ...|.|.+. +| .||++....+.|.+||++..+- .. +++- .
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~-~~--~~~~~~~ 238 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSN-LQ--LTDAELG 238 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTC-TT--CCHHHHH
T ss_pred cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcC-CC--CChhhhh
Confidence 21 0123322 124556555 44 7999988888999998642110 00 0000 0
Q ss_pred hhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 279 ERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 279 ~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
..+...+ ....|+|||+|+++ ++||+.-.-..|+.+..
T Consensus 239 ~~~~~~g--~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 239 SKIERYS--EKPICDGISIDKDH-NIYVGDLAHSAIGVITS 276 (343)
T ss_dssp TTCEEEE--ECCSCSCEEECTTC-CEEEEEGGGTEEEEEET
T ss_pred cceEecc--cCCCCceEEECCCC-CEEEEccCCCeEEEEEC
Confidence 0000000 01268999999985 79999766677777654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-11 Score=106.20 Aligned_cols=199 Identities=12% Similarity=0.108 Sum_probs=138.6
Q ss_pred EEEEEecC-CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeC-CEEEEEEeeCCE
Q 019103 95 VVNEFPHD-PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLG-EKLFQVTWLQKT 171 (346)
Q Consensus 95 Vv~t~phd-~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g-~~LY~ltw~~~~ 171 (346)
.+++++.. ......+++++++|.||+++. +...|.++|++ +++.. +.++. .....+++.+. +.+|+++..++.
T Consensus 9 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~--~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 84 (300)
T 2qc5_A 9 YLEEFNLSIPDSGPYGITSSEDGKVWFTQH--KANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANK 84 (300)
T ss_dssp EEEEEECSSTTCCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred eEEEEecCCCCCCcceeeECCCCCEEEEcC--CCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCe
Confidence 34555542 233457999999999999986 55799999999 87764 44432 24467788864 679999988999
Q ss_pred EEEEECCCCcEEEEEecC----CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-C
Q 019103 172 GFIYDQNNLNKLEEFTHQ----MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~----~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~ 245 (346)
++++|++ .+. .++..+ .+.+..++++| .||+++ +.+.|+.+|++ .++. .+..... ...++.+.+. +
T Consensus 85 v~~~d~~-g~~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~---~~~~~~i~~d~~ 156 (300)
T 2qc5_A 85 IGKLSKK-GGF-TEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIY-EYDLPNK---GSYPAFITLGSD 156 (300)
T ss_dssp EEEECTT-SCE-EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEE-EEECSST---TCCEEEEEECTT
T ss_pred EEEECCC-CCe-EEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEE-EccCCCC---CCCceeEEECCC
Confidence 9999988 554 445432 24444555555 578877 57899999998 6654 3333221 1123446554 6
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 246 GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
|+||++....+.|.++|+ +|++.. +.+.. ....++||++++++ ++||+...-..|+.+..
T Consensus 157 g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~-----------~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITN-TGKLEE-YPLPT-----------NAAAPVGITSGNDG-ALWFVEIMGNKIGRITT 216 (300)
T ss_dssp SSEEEEETTTTEEEEECT-TCCEEE-EECSS-----------TTCCEEEEEECTTS-SEEEEETTTTEEEEECT
T ss_pred CCEEEEecCCCeEEEECC-CCcEEE-eeCCC-----------CCCCcceEEECCCC-CEEEEccCCCEEEEEcC
Confidence 789999988899999999 888764 43311 12468999999976 68999877778887754
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-11 Score=118.43 Aligned_cols=189 Identities=11% Similarity=0.004 Sum_probs=135.6
Q ss_pred ceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 107 TQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 107 TqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
..|+++++ +++||++.- ...+|.++|++++.+...+..+ ....+|++++ ++.||.+++..+.+.++|.+.....
T Consensus 118 ~~gl~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~ 194 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 194 (386)
T ss_dssp EEEEEEETTTTEEEEEET--TTTEEEEEETTSCCEEEEECSS-CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred cEEEEEecCCCeEEEEeC--CCCcEEEEecCCCCcEEEEeCC-CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence 47999995 568999976 5679999999988755444322 1124667776 7899999999999999998754433
Q ss_pred EEEec--CCCceeEEeeCCCEEEEEC-CC-CeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCCe
Q 019103 184 EEFTH--QMKDGWGLATDGKVLFGSD-GS-SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDC 257 (346)
Q Consensus 184 ~ti~~--~~peGwGLt~Dg~~LyvSd-Gs-~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~ 257 (346)
..+.. ..|.|.++++++++||++| +. ..|+.+|+...... .+ +.. .+..+|.|.+. +++||++.+..+.
T Consensus 195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~~-~~~---~~~~PnGlavd~~~~~lY~aD~~~~~ 269 (386)
T 3v65_B 195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-II-ADT---HLFWPNGLTIDYAGRRMYWVDAKHHV 269 (386)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE-ECS---SCSCEEEEEEEGGGTEEEEEETTTTE
T ss_pred EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-EE-EEC---CCCCeeeEEEeCCCCEEEEEECCCCE
Confidence 33332 2578888899999999999 55 89999998754332 22 211 12344667665 7899999999999
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
|.++|.+.......+.. + ...|.|||++ ++.+|+|...-..|+++.
T Consensus 270 I~~~d~dG~~~~~~~~~-~------------~~~P~giav~--~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 270 IERANLDGSHRKAVISQ-G------------LPHPFAITVF--EDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEECTTSCSCEEEECS-S------------CSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeeEEEEEC-C------------CCCceEEEEE--CCEEEEeeCCCCeEEEEE
Confidence 99999875433222321 1 2368999995 569999987778888875
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-11 Score=116.41 Aligned_cols=189 Identities=12% Similarity=0.017 Sum_probs=135.1
Q ss_pred ceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 107 TQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 107 TqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
..||++++ ++.||.+.- ...+|.+++++++.+...+..+ -...+|++++ ++.||.+++..+.+.++|.+.....
T Consensus 75 ~~~l~~d~~~~~ly~~D~--~~~~I~r~~~~g~~~~~~~~~~-~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~ 151 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDV--TLDRILRANLNGSNVEEVVSTG-LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK 151 (349)
T ss_dssp EEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred eEEEEEeccccEEEEEec--cCCceEEEecCCCCceEEEeCC-CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence 37999994 568999975 5569999999987654443322 1224677776 7899999999999999998754333
Q ss_pred EEEec--CCCceeEEeeCCCEEEEEC-CC-CeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCCe
Q 019103 184 EEFTH--QMKDGWGLATDGKVLFGSD-GS-SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDC 257 (346)
Q Consensus 184 ~ti~~--~~peGwGLt~Dg~~LyvSd-Gs-~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~ 257 (346)
.-+.. ..|.|.+++++++.||++| +. ..|+.+|+...... . .+.. .+..+|.|.+. +++||++.+..+.
T Consensus 152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~-~~~~---~~~~PnGla~d~~~~~lY~aD~~~~~ 226 (349)
T 3v64_C 152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-I-IADT---HLFWPNGLTIDYAGRRMYWVDAKHHV 226 (349)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-E-SCCS---SCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-E-EEEC---CCCCcceEEEeCCCCEEEEEECCCCE
Confidence 22322 2578888999999999999 55 89999998653321 1 1221 23345667665 7899999999999
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
|.++|++.......+.. + ...|+|||++ ++++|+|.-.-..|+.+.
T Consensus 227 I~~~~~dG~~~~~~~~~-~------------~~~P~giav~--~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 227 IERANLDGSHRKAVISQ-G------------LPHPFAITVF--EDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp EEEEETTSCSCEEEECS-S------------CSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCceEEEEeC-C------------CCCceEEEEE--CCEEEEecCCCCeEEEEE
Confidence 99999875433222321 1 2368999995 569999987778888875
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-11 Score=118.58 Aligned_cols=180 Identities=14% Similarity=0.116 Sum_probs=128.7
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCC----cEEEEEec--
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNL----NKLEEFTH-- 188 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl----~~i~ti~~-- 188 (346)
.|+.++. ..|+++|+++.+....+.-...+ .|++.+ +++||.++..+++|+.+|.+.. .....+..
T Consensus 85 ~ll~~~~----~~I~~i~l~~~~~~~~~~~~~~~--~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTNR----HEVRKMTLDRSEYTSLIPNLRNV--VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEET----TEEEEECTTSCSCEEEECSCSCE--EEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEecc----ceeEEEccCCcceeEeccccCcc--eEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 5777755 59999999988766655444444 556665 6899999999999999998752 22222322
Q ss_pred CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCC-CeEEEEeCC
Q 019103 189 QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQT-DCIARISHE 264 (346)
Q Consensus 189 ~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~s-n~I~vID~~ 264 (346)
..|+|.++.+.++.||++| +.+.|.++|++.......+.. ....| +.|..+ +|+||++.|.. +.|.++|++
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P----~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKP----RAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCE----EEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCc----ceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 2578888888899999999 588999999986554333322 21234 445554 78999999975 789999987
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
.......+.- + ...|||||+|+++++||++...-.+|+.+.+.
T Consensus 234 G~~~~~~~~~-~------------l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 234 GVDIYSLVTE-N------------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp SCSCEEEECS-S------------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCccEEEEEC-C------------CCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 5444333321 1 24789999999999999998888899988764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-11 Score=115.94 Aligned_cols=201 Identities=11% Similarity=0.047 Sum_probs=136.4
Q ss_pred EEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEe----c-cCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCc
Q 019103 110 LLYAEND-TLFESTGLYGRSSVRRVALETGKVEAIN----Q-MEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 110 L~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~----~-l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
+++++++ .||.+... +...|.++|..++.....+ . ....+ .+++++ +++||++++ ++.++++|.++..
T Consensus 176 ia~~~~g~~l~~~d~~-~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p--~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWE-GTHTVYVYMKASGWAPTRIGQLGSTFSGKI--GAVALDETEEWLYFVDS-NKNFGRFNVKTQE 251 (409)
T ss_dssp CEECTTSSEEEEEBSS-TTCEEEEEEGGGTTCEEEEEECCTTSCSCC--CBCEECTTSSEEEEECT-TCEEEEEETTTCC
T ss_pred eeEecCCCcEEEEecC-CCceEEEEEcCCCceeEEeeeccchhcCCc--EEEEEeCCCCeEEEEEC-CCcEEEEECCCCC
Confidence 8999887 58877652 3349999999988654444 2 22334 445554 689999654 8899999998775
Q ss_pred EEEEE----ec---C-CCc-eeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccC---Ce--------eeeecee
Q 019103 182 KLEEF----TH---Q-MKD-GWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYK---GR--------EVRNLNE 240 (346)
Q Consensus 182 ~i~ti----~~---~-~pe-GwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~---G~--------pv~~lNE 240 (346)
. ..+ .. + .|. |..++++++.||++| +.++|+.+|+... +. ..++.. |. .+..++.
T Consensus 252 ~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~--~~~g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 252 V-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CE--WFCGSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp E-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EE--EEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred E-EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EE--EEEeCCCCCCcCCCcccccEeCCCeE
Confidence 3 233 11 1 134 788888889999999 5889999998653 22 222221 10 1334556
Q ss_pred eEee-CCEEEEEec-CCCeEEEEeCCCCeEEEEEECCchhhhh-hhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 241 LEFI-KGEVWANVW-QTDCIARISHEDGVVLGWVLLPNLRERL-VAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 241 LE~~-~G~LyaNv~-~sn~I~vID~~TG~Vv~~I~l~~l~~~~-~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
+.+. +|.||++.+ ..++|.++|+.+|++....-.....+.. ..........|+|||++++ +.|||+...-.+|.+|
T Consensus 328 ia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 328 MTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKY 406 (409)
T ss_dssp EEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEE
T ss_pred EEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEE
Confidence 7666 688999998 9999999999899976555331110000 0000012457999999999 7999999999999998
Q ss_pred EE
Q 019103 318 NL 319 (346)
Q Consensus 318 ~l 319 (346)
.+
T Consensus 407 ~~ 408 (409)
T 3hrp_A 407 AV 408 (409)
T ss_dssp EE
T ss_pred Ee
Confidence 76
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-11 Score=120.19 Aligned_cols=207 Identities=13% Similarity=0.131 Sum_probs=135.1
Q ss_pred ceeEEEecCCE-EEEEcCCCC--CCeEEEEECCCCcEE--EEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCC
Q 019103 107 TQGLLYAENDT-LFESTGLYG--RSSVRRVALETGKVE--AINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 107 TqGL~~~~d~~-LyeStGlyg--~s~V~~iDl~Tgkv~--~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~t 179 (346)
..||+++++|. ||++....+ ...+..++.+.+ .. ..+.-...+ .|++++ ++.||+++|.++++++||+++
T Consensus 181 P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~-~~~~~~l~~~~~p--~giavdp~~g~lyv~d~~~~~V~~~~~~~ 257 (430)
T 3tc9_A 181 VRTICWTHEADSMIITNDQNNNDRPNNYILTRESG-FKVITELTKGQNC--NGAETHPINGELYFNSWNAGQVFRYDFTT 257 (430)
T ss_dssp EEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT-SCSEEEEEECSSC--CCEEECTTTCCEEEEETTTTEEEEEETTT
T ss_pred cceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc-eeeeeeeccCCCc--eEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence 47999999885 999975222 225666665432 22 222212233 556665 588999999999999999987
Q ss_pred CcEEEEEecC---CCceeEEeeCCCEEEEEC-CCCeEEEEeCCC--CcE--EEEEEecc---CCe--------eeeece-
Q 019103 180 LNKLEEFTHQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDPQT--LKV--IRKDIVRY---KGR--------EVRNLN- 239 (346)
Q Consensus 180 l~~i~ti~~~---~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T--~kv--i~~I~V~~---~G~--------pv~~lN- 239 (346)
.+....+..+ .|.|.++++||++||++| +.++|+++|... .+. +..+ .+. .|. .+..++
T Consensus 258 ~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~-ag~~g~~g~~dg~~~~a~~~~P~~ 336 (430)
T 3tc9_A 258 QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIV-CGQQGAKDWVDGVGKKARMHAPRQ 336 (430)
T ss_dssp TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEE-EECTTCBCCBCEEGGGCBBSSEEE
T ss_pred CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEE-eccCCCCCCCCCCCcceEeCCCcc
Confidence 7653333332 478889999999999999 588999988653 222 1122 221 111 122223
Q ss_pred eeEee---------CCEEEEEecCCCeEEEEeCCCCeEEEEEECCc--hhh---h-hhhccCCCCceeeEEEEeCCCCEE
Q 019103 240 ELEFI---------KGEVWANVWQTDCIARISHEDGVVLGWVLLPN--LRE---R-LVAAGYNGIDVLNGIAWDSNRNRI 304 (346)
Q Consensus 240 ELE~~---------~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~--l~~---~-~~~~~~~~~~vlNGIA~d~~~~~L 304 (346)
-+... +|.||++.+..++|.+||+ +|++....-... ..+ . .. .....+.|.|||++++++.|
T Consensus 337 gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~--~~~~~~~P~giavd~~~g~l 413 (430)
T 3tc9_A 337 GTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLR--QEARFNHPEGIVYDEERECF 413 (430)
T ss_dssp EEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETT--TTCBCSSEEEEEEETTTTEE
T ss_pred eEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCch--hhcEeCCCcEEEEECCCCEE
Confidence 23221 3799999999999999995 688766553310 000 0 00 00123579999999988999
Q ss_pred EEecCCCCcEEEEEEe
Q 019103 305 FVTGKLWPKLYEINLR 320 (346)
Q Consensus 305 fVTGK~Wp~l~ev~l~ 320 (346)
||+...-.+|.+|.+.
T Consensus 414 yVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 414 FIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEGGGTEEEEEEEC
T ss_pred EEEECCCCeEEEEccC
Confidence 9999999999998764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-11 Score=111.01 Aligned_cols=190 Identities=16% Similarity=0.266 Sum_probs=130.3
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCe--eEEEEEEe-CCEEEEEEe------------
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSY--FGEGLTLL-GEKLFQVTW------------ 167 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~--FgeGit~~-g~~LY~ltw------------ 167 (346)
..+..|++++++|+||+++. +...|.++|.+ |++..... ..... ....++.+ .+++|+++-
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~--~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~ 161 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEH--GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCP 161 (305)
T ss_dssp CSCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCC
T ss_pred CCccceeeECCCCCEEEEEC--CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccc
Confidence 34457999999999999875 55699999997 77543332 12111 12345554 467998641
Q ss_pred -----eCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCC------CeEEEEeCCCCcEEE-EEEec-cCCee
Q 019103 168 -----LQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGS------SMLYQIDPQTLKVIR-KDIVR-YKGRE 234 (346)
Q Consensus 168 -----~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs------~~l~vIDp~T~kvi~-~I~V~-~~G~p 234 (346)
..+.++.+|+++++...-.....|.|..+++||+.||++|.. +.|+++|..+..+.. ++... ..|.|
T Consensus 162 ~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~p 241 (305)
T 3dr2_A 162 ADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLP 241 (305)
T ss_dssp CCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred cccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCC
Confidence 136799999976654432233357889999999999999853 799999987654221 11111 12223
Q ss_pred eeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019103 235 VRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 235 v~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
+.+..+ +|.||++.+ +.|.++|+ +|+.+..+.++. .+..++|++++++||||.. ..
T Consensus 242 ----dgi~~d~~G~lwv~~~--~gv~~~~~-~g~~~~~~~~~~--------------~~~~~~f~~d~~~L~it~~--~~ 298 (305)
T 3dr2_A 242 ----DGFCVDRGGWLWSSSG--TGVCVFDS-DGQLLGHIPTPG--------------TASNCTFDQAQQRLFITGG--PC 298 (305)
T ss_dssp ----CSEEECTTSCEEECCS--SEEEEECT-TSCEEEEEECSS--------------CCCEEEECTTSCEEEEEET--TE
T ss_pred ----CeEEECCCCCEEEecC--CcEEEECC-CCCEEEEEECCC--------------ceeEEEEeCCCCEEEEEcC--Ce
Confidence 235444 688999873 56999999 688999997622 2577999999999999965 58
Q ss_pred EEEEEE
Q 019103 314 LYEINL 319 (346)
Q Consensus 314 l~ev~l 319 (346)
||.+++
T Consensus 299 l~~~~~ 304 (305)
T 3dr2_A 299 LWMLPL 304 (305)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 998875
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-10 Score=105.53 Aligned_cols=206 Identities=11% Similarity=0.062 Sum_probs=145.8
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEee-CC
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWL-QK 170 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~-~~ 170 (346)
=+++-+++.....-...+.+++||++|++. ...|..+|+ +|+++-++..+......++... +++++++... ++
T Consensus 25 G~~~w~~~~~~~~~~~~~~~~pdG~ilvs~----~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~ 99 (276)
T 3no2_A 25 KEIVWEYPLEKGWECNSVAATKAGEILFSY----SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS 99 (276)
T ss_dssp TEEEEEEECCTTCCCCEEEECTTSCEEEEC----BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred CeEEEEeCCCccCCCcCeEECCCCCEEEeC----CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence 456677775432223688999999988853 358999999 8999999988643222333442 4556666655 78
Q ss_pred EEEEEECCCCcEEEEEecC--------CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE
Q 019103 171 TGFIYDQNNLNKLEEFTHQ--------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~--------~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE 242 (346)
+++.+|+ +++++.+++.. .+.+....+||+.+++..+++.|+.+|++ ++++-+..... .|.. -..
T Consensus 100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~--~~~~---~~~ 172 (276)
T 3no2_A 100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG--TPFS---SAF 172 (276)
T ss_dssp EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS--CCCE---EEE
T ss_pred EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC--Cccc---eeE
Confidence 9999997 89999998753 12344567889887766678899999998 99988887753 3432 112
Q ss_pred eeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe--cC-------CCCc
Q 019103 243 FIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT--GK-------LWPK 313 (346)
Q Consensus 243 ~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT--GK-------~Wp~ 313 (346)
..+|.+++.....+.|..+|++||+++-++.-.++.+ .....+.|++..++++.+... |. +.+.
T Consensus 173 ~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~-------~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~ 245 (276)
T 3no2_A 173 LDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG-------VQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQ 245 (276)
T ss_dssp CTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS-------CCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCS
T ss_pred cCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC-------ccccccccceEcCCCCEEEEeccCccccccccCCce
Confidence 3478888888778899999999999999886422211 013468999999987655444 32 5778
Q ss_pred EEEE
Q 019103 314 LYEI 317 (346)
Q Consensus 314 l~ev 317 (346)
+|||
T Consensus 246 ~~~~ 249 (276)
T 3no2_A 246 LVEI 249 (276)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-11 Score=115.43 Aligned_cols=182 Identities=13% Similarity=0.093 Sum_probs=128.2
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEE-EEe--cCCC
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLE-EFT--HQMK 191 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~-ti~--~~~p 191 (346)
.|+.++. ..|+++|+++......+.++....+.|++.+ +++||.++..+++++.++++...... .+. ...|
T Consensus 6 ~ll~~~~----~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYANR----RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEECE----EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EEEEEcc----CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 5667754 5999999998752222333333345677776 58999999999999999988664222 222 2368
Q ss_pred ceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecC-CCeEEEEeCCCCe
Q 019103 192 DGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQ-TDCIARISHEDGV 267 (346)
Q Consensus 192 eGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~-sn~I~vID~~TG~ 267 (346)
+|+++.+.++.||++| +.+.|.++|++.... ..+.-.....| +.+.+. +|+||++.|. ...|.++|++-..
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~~~~P----~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 156 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQELDQP----RAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 156 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSE----EEEEEEGGGTEEEEEECSSSCEEEEEETTSCS
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EEEEeCCCCCc----cEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC
Confidence 9999999999999999 578999999875332 22221222233 446554 6899999986 6889999986432
Q ss_pred EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 268 VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 268 Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
. ..+--. ....|||||+|+++++||+|.-.-.+|+.+.+.
T Consensus 157 ~-~~~~~~------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 157 R-FIIINS------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp C-EEEECS------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred e-EEEEEC------------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 2 222111 134789999999999999998888999988764
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-11 Score=112.49 Aligned_cols=199 Identities=13% Similarity=0.028 Sum_probs=131.2
Q ss_pred eeEEEecCCE-EEEEcCC------C------CCCeEEEEECC-CCcEEEEecc-----CCCeeEEEEEEeCCEEEEEEee
Q 019103 108 QGLLYAENDT-LFESTGL------Y------GRSSVRRVALE-TGKVEAINQM-----EGSYFGEGLTLLGEKLFQVTWL 168 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGl------y------g~s~V~~iDl~-Tgkv~~~~~l-----~~~~FgeGit~~g~~LY~ltw~ 168 (346)
.++.++|||+ ||+.+.. | .+..+.+|+++ +|++...+.. ...+.+..++++|++||+++..
T Consensus 86 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~ 165 (365)
T 1jof_A 86 RANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT 165 (365)
T ss_dssp GGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred ccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC
Confidence 5789999997 3432221 1 35689999987 5877655542 2344444455567899999988
Q ss_pred CCEEEEEECC-CCcE--EEEEec---C-CCceeEEeeCCCEEEEEC-CCCeEEEE--eCCCCcEEE---EEEeccC---C
Q 019103 169 QKTGFIYDQN-NLNK--LEEFTH---Q-MKDGWGLATDGKVLFGSD-GSSMLYQI--DPQTLKVIR---KDIVRYK---G 232 (346)
Q Consensus 169 ~~~v~V~D~~-tl~~--i~ti~~---~-~peGwGLt~Dg~~LyvSd-Gs~~l~vI--Dp~T~kvi~---~I~V~~~---G 232 (346)
++.+.++|.+ +++. +.++.. + .|.+..+++||++||+++ .+++|.++ |+++++... ++..-.. |
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g 245 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPD 245 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCC
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCC
Confidence 8999999988 6654 445542 2 367778999999999987 57788776 556776542 3433211 1
Q ss_pred ee-----eeeceeeE-ee-CC-EEEEEecCCC-----eEEEEeCC-CCeEEEE---EECCchhhhhhhccCCCCceeeEE
Q 019103 233 RE-----VRNLNELE-FI-KG-EVWANVWQTD-----CIARISHE-DGVVLGW---VLLPNLRERLVAAGYNGIDVLNGI 295 (346)
Q Consensus 233 ~p-----v~~lNELE-~~-~G-~LyaNv~~sn-----~I~vID~~-TG~Vv~~---I~l~~l~~~~~~~~~~~~~vlNGI 295 (346)
.. .....++. +. || +||+.+...+ .|.++|.+ +|++... +... ...+.++
T Consensus 246 ~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~-------------~~~~~~~ 312 (365)
T 1jof_A 246 RDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP-------------TSGGHSN 312 (365)
T ss_dssp BCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS-------------SCCTTCC
T ss_pred cccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC-------------CCCcccc
Confidence 11 00234566 44 45 7999887666 89999875 7886542 3210 1235789
Q ss_pred EEeC---CCCEEEEecCCCCcEEEEEE
Q 019103 296 AWDS---NRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 296 A~d~---~~~~LfVTGK~Wp~l~ev~l 319 (346)
|++| ++++|||+++.-++|.-.++
T Consensus 313 a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 313 AVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp CEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred eecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 9999 89999999987776544443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-11 Score=117.21 Aligned_cols=175 Identities=12% Similarity=0.041 Sum_probs=126.4
Q ss_pred cceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEe--CCEEEEEEeeC-CEEEEEECCCC
Q 019103 106 FTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLL--GEKLFQVTWLQ-KTGFIYDQNNL 180 (346)
Q Consensus 106 FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~--g~~LY~ltw~~-~~v~V~D~~tl 180 (346)
...||+++. ++.||++.. +..+|.++|++.......+.-+ ..| .||+++ ++.||.++|.+ +++.++|.+..
T Consensus 160 ~p~glavD~~~~~lY~~d~--~~~~I~~~~~~g~~~~~l~~~~~~~P--~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFRENGSKP--RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp CEEEEEEETTTTEEEEEET--TTTEEEEECTTTCSEEEEEECSSCCE--EEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred CcccEEEEecCCceEEEEC--CCCeEEEEeCCCCceEEEEeCCCCCc--ceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 447999996 679999976 5679999999876544333321 234 566665 68999999985 89999998643
Q ss_pred cEEEEEec--CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEecc--CCeeeeeceeeEeeCCEEEEEecCC
Q 019103 181 NKLEEFTH--QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY--KGREVRNLNELEFIKGEVWANVWQT 255 (346)
Q Consensus 181 ~~i~ti~~--~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~--~G~pv~~lNELE~~~G~LyaNv~~s 255 (346)
....-+.. ..|.|.++++++++||++| +.+.|..+|...... +.+.-.. .+.|+. |...+++||++.|..
T Consensus 236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~g----l~v~~~~lywtd~~~ 310 (400)
T 3p5b_L 236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFS----LAVFEDKVFWTDIIN 310 (400)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEE----EEEETTEEEEEESSS
T ss_pred ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEE----EEEeCCEEEEecCCC
Confidence 33222232 3578888999999999999 588999999865333 3332221 234554 777889999999999
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019103 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
+.|.++|+.+|+.+..|.. ++ ..|.||++.....
T Consensus 311 ~~V~~~~~~~G~~~~~i~~-~~------------~~p~~i~v~~~~~ 344 (400)
T 3p5b_L 311 EAIFSANRLTGSDVNLLAE-NL------------LSPEDMVLFHNLT 344 (400)
T ss_dssp CSEEEEESSSCCCCEEEEC-SC------------SCEEEEEEESGGG
T ss_pred CeEEEEEcCCCCceEEEec-CC------------CCCceEEEEeecc
Confidence 9999999999998888854 22 2467887754433
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=121.37 Aligned_cols=182 Identities=18% Similarity=0.159 Sum_probs=135.3
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEEecC--CC
Q 019103 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MK 191 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~p 191 (346)
..|+.+++ ..|+++|+++.+....++++.-.-+.|++.+ +++||.++..+++|+.++.+.......+..+ .|
T Consensus 7 ~~Ll~s~~----~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P 82 (628)
T 4a0p_A 7 AFLLFSRR----ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYP 82 (628)
T ss_dssp CEEEEEET----TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred cEEEEEeC----CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCc
Confidence 35666655 4999999998887666777643335667775 6899999999999999998765444444443 68
Q ss_pred ceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecC-CCeEEEEeCCCCe
Q 019103 192 DGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQ-TDCIARISHEDGV 267 (346)
Q Consensus 192 eGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~-sn~I~vID~~TG~ 267 (346)
+|.++.+.++.||++| +.++|.++|++.... ..+.-..-..| +.|..+ +|+||++.|. .+.|.+++++...
T Consensus 83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P----~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSP----RALALDPAEGFMYWTEWGGKPKIDRAAMDGSE 157 (628)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCE----EEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred ceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCc----ccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc
Confidence 9999999999999999 588999999875432 22221222234 456665 7999999997 6789999987655
Q ss_pred EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 268 VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 268 Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+...+ .+ ...|||||+|+++++||++...-+.|+.+.+.
T Consensus 158 ~~~l~--~~------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 158 RTTLV--PN------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp CEEEE--CS------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eEEEE--CC------------CCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 43333 12 23689999999999999999999999988764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-11 Score=114.79 Aligned_cols=158 Identities=11% Similarity=0.078 Sum_probs=114.9
Q ss_pred ceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEEEe--CCEEEEEEee-CCEEEEEECCCCc
Q 019103 107 TQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLL--GEKLFQVTWL-QKTGFIYDQNNLN 181 (346)
Q Consensus 107 TqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~FgeGit~~--g~~LY~ltw~-~~~v~V~D~~tl~ 181 (346)
..||+++. ++.||.+.. +...|.++|++........ .--..| .|++++ ++.||.++|. .+.|+++|.+- +
T Consensus 81 p~glavd~~~g~ly~~d~--~~~~I~~~~~dG~~~~~l~~~~~~~P--~giavdp~~g~ly~td~~~~~~I~r~~~dG-~ 155 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDS--ETNRIEVSNLDGSLRKVLFWQELDQP--RAIALDPSSGFMYWTDWGEVPKIERAGMDG-S 155 (318)
T ss_dssp CCEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSE--EEEEEEGGGTEEEEEECSSSCEEEEEETTS-C
T ss_pred ccEEEEEcCCCeEEEEEC--CCCEEEEEECCCCcEEEEEeCCCCCc--cEEEEeCCCCEEEEEecCCCCEEEEEEcCC-C
Confidence 37999995 679999976 5679999999865322222 111234 556665 6899999996 69999999763 2
Q ss_pred EEEEE-e--cCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCe
Q 019103 182 KLEEF-T--HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDC 257 (346)
Q Consensus 182 ~i~ti-~--~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~ 257 (346)
....+ . ...|.|.++++++++||++| +.+.|+.+|..... .+.+.-+..+.|.. |.+.++.+|++.|..+.
T Consensus 156 ~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~g----lav~~~~lywtd~~~~~ 230 (318)
T 3sov_A 156 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFA----LTLFEDILYWTDWSTHS 230 (318)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCEEE----EEEETTEEEEEETTTTE
T ss_pred CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCceE----EEEeCCEEEEEecCCCe
Confidence 22222 2 23578888999999999999 58899999986422 22222222345544 77788999999999999
Q ss_pred EEEEeCCCCeEEEEEEC
Q 019103 258 IARISHEDGVVLGWVLL 274 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l 274 (346)
|.++|+.+|+.+..|..
T Consensus 231 V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 231 ILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEEETTTCCSCEEEEC
T ss_pred EEEEECCCCCceEEEeC
Confidence 99999999998888855
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-10 Score=123.88 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=128.5
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCC----cEEEEEe--c
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNL----NKLEEFT--H 188 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl----~~i~ti~--~ 188 (346)
.|+.++. ..|++++++.++....+.-... ..|++++ +++||.++..+++|++++.+.. ....-+. .
T Consensus 397 ~Ll~an~----~~Ir~i~l~~~~~~~l~~~~~~--~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTNR----HEVRKMTLDRSEYTSLIPNLRN--VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEECB----SSEEEECTTSCCCEEEECSCSS--EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred ccccccc----cceeEeeccCCcceeeecCCCc--eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 5677754 4799999998876555543334 4667775 5899999999999999998753 2222233 2
Q ss_pred CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCC-CeEEEEeCC
Q 019103 189 QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQT-DCIARISHE 264 (346)
Q Consensus 189 ~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~s-n~I~vID~~ 264 (346)
..|+|.++.+.++.||++| +.++|.++|+..... ..+.-.....| +.|.+. +|+||++.|.. +.|.+++++
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~l~~~~l~~P----~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKP----RAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCE----EEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EEEEeCCCCCc----ceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 3689999999999999999 588999999875443 33322222234 335554 68999999987 889999997
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
...+...+.. + ...|||||+|+.+++||++...-++|+.+.+.
T Consensus 546 G~~~~~lv~~-~------------l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 546 GVDIYSLVTE-N------------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp SCCEEEEECS-S------------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEeC-C------------CCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 5554443321 2 23689999999999999998877888888763
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.31 E-value=9.7e-10 Score=101.30 Aligned_cols=193 Identities=12% Similarity=0.083 Sum_probs=127.1
Q ss_pred CCCCcceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCC
Q 019103 102 DPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 102 d~~~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~t 179 (346)
....|.+|..++++ +.||.+.. ...+|.+||++++++ ....++..+. +++.+ +++||+++ ++.++++|+++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~--~~~~i~~~d~~~~~~-~~~~~~~~~~--~i~~~~dG~l~v~~--~~~l~~~d~~~ 82 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDI--PAKKVCRWDSFTKQV-QRVTMDAPVS--SVALRQSGGYVATI--GTKFCALNWKE 82 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCE-EEEECSSCEE--EEEEBTTSSEEEEE--TTEEEEEETTT
T ss_pred cCCccccCCeEECCCCEEEEEEC--CCCEEEEEECCCCcE-EEEeCCCceE--EEEECCCCCEEEEE--CCeEEEEECCC
Confidence 35678899999984 58888865 456999999999986 4455666554 45554 23488887 68999999988
Q ss_pred CcEEEEEec--C----CCceeEEeeCCCEEEEEC------------CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019103 180 LNKLEEFTH--Q----MKDGWGLATDGKVLFGSD------------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 180 l~~i~ti~~--~----~peGwGLt~Dg~~LyvSd------------Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
.+...-... + .+.+..+++||+ +|+++ ....|+.+|+. .++..... .+...|.+
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~------~~~~pngi 154 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD------QVDISNGL 154 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE------EESBEEEE
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCEEEEee------ccccccce
Confidence 765332222 1 134455778887 77754 24589999986 44432111 12244667
Q ss_pred Eee-CC-EEEEEecCCCeEEEEeC--CCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 242 EFI-KG-EVWANVWQTDCIARISH--EDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 242 E~~-~G-~LyaNv~~sn~I~vID~--~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
.+. +| .||++....+.|.++|. ++|++...=.+..+.. ....|.|||+|++| +|||+.-.-..|+.+
T Consensus 155 ~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~--------~~~~p~g~~~d~~G-~lwva~~~~~~v~~~ 225 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK--------EEQIPDGMCIDAEG-KLWVACYNGGRVIRL 225 (297)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG--------GGCEEEEEEEBTTS-CEEEEEETTTEEEEE
T ss_pred EEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC--------CCCCCCeeEECCCC-CEEEEEcCCCEEEEE
Confidence 665 44 79999888999999975 7887642111101110 12378999999997 699996555557666
Q ss_pred E
Q 019103 318 N 318 (346)
Q Consensus 318 ~ 318 (346)
.
T Consensus 226 d 226 (297)
T 3g4e_A 226 D 226 (297)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-10 Score=114.21 Aligned_cols=203 Identities=11% Similarity=0.082 Sum_probs=134.7
Q ss_pred ceeEEEec--CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC----EEEEEECCC-
Q 019103 107 TQGLLYAE--NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK----TGFIYDQNN- 179 (346)
Q Consensus 107 TqGL~~~~--d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~----~v~V~D~~t- 179 (346)
..||+++| ++.||++.. + .+|++||++++++.........+.+..+...+++||++++.++ .+++++.+.
T Consensus 139 P~~lavdp~~~g~Lyv~d~--~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGE--Q-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp CCEEEEETTEEEEEEEEEB--T-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCEEEECCCCCCeEEEEeC--C-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 47999995 478999976 3 7999999999987766664455555444445678999998543 577788643
Q ss_pred CcEEEEEe-cCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecCC
Q 019103 180 LNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQT 255 (346)
Q Consensus 180 l~~i~ti~-~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~s 255 (346)
+.....+. ...|.|.++++++++||++| +.++|+.+|+++.+......++..+.|. -|.+. +| +||+..+..
T Consensus 216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~----gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEF----HIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCE----EEEECTTSSEEEEEETTT
T ss_pred eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcce----eEEEcCCCCEEEEEECCC
Confidence 22123333 23578899999888899999 6889999999987764444444333343 36555 44 699999999
Q ss_pred CeEEEEeCC--CCeE--EEEEECC-c---hhhhhhhccCCCCceee-EEEEeC-------CCCEEEEecCCCCcEEEEE
Q 019103 256 DCIARISHE--DGVV--LGWVLLP-N---LRERLVAAGYNGIDVLN-GIAWDS-------NRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 256 n~I~vID~~--TG~V--v~~I~l~-~---l~~~~~~~~~~~~~vlN-GIA~d~-------~~~~LfVTGK~Wp~l~ev~ 318 (346)
++|.++|.+ +++. +.++.-. + ....... ......|+ |+|.++ ....|||+...-..|.++.
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~--~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGK--KARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGG--GCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCc--ceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 999998876 3443 1122100 0 0000000 01234688 899974 3468999987777887764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.8e-10 Score=119.94 Aligned_cols=191 Identities=10% Similarity=0.087 Sum_probs=131.0
Q ss_pred ceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcE----EEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCC
Q 019103 107 TQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKV----EAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 107 TqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv----~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~t 179 (346)
..||+++. +++||++.. +..+|++++++.... ...+.. .-...+||+++ ++.||++++..++|.++|.+.
T Consensus 426 ~~gl~~d~~~~~lY~sD~--~~~~I~~~~l~g~~~~~~~~~vi~~-~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISR-DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp EEEEEEETTTTEEEEEET--TTTEEEEEEC--------CEEEECS-SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEeecccCCeeEEeec--cceeEEEEeccCCCCCcceeEEEec-CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 37999996 569999976 567999999986321 222211 11224667775 689999999999999999875
Q ss_pred CcEEEEEec--CCCceeEEeeCCCEEEEEC-CC-CeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEec
Q 019103 180 LNKLEEFTH--QMKDGWGLATDGKVLFGSD-GS-SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVW 253 (346)
Q Consensus 180 l~~i~ti~~--~~peGwGLt~Dg~~LyvSd-Gs-~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~ 253 (346)
.....-+.. ..|.|.+|.+.+++||++| |. ..|.++|....... .+.-.. +..+|.|.++ +|+||++.+
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-~lv~~~----l~~P~GLavD~~~~~LYwaD~ 577 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTEN----IQWPNGITLDLLSGRLYWVDS 577 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSS----CSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-EEEeCC----CCCceEEEEecCCCeEEEEeC
Confidence 543333332 2588889999999999999 65 79999998754432 222221 2234556555 789999999
Q ss_pred CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 254 QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
..+.|.++|++...+...+.... ....|.|||++ +++||+|...-..|+++.
T Consensus 578 ~~~~I~~~d~dG~~~~~v~~~~~-----------~l~~P~glav~--~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 578 KLHSISSIDVNGGNRKTILEDEK-----------RLAHPFSLAVF--EDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp TTTEEEEEETTSCSCEEEEECTT-----------TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEecCCCceEEEecCCC-----------ccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence 99999999997655444442210 12256788885 569999988888888885
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-10 Score=114.62 Aligned_cols=222 Identities=12% Similarity=0.157 Sum_probs=139.1
Q ss_pred ceeEEE-------ecCC-EEEEEcCCCC----CCeEEEEECCC-CcEE-----EEeccCCCeeEEEEEEeCCEEEEEEee
Q 019103 107 TQGLLY-------AEND-TLFESTGLYG----RSSVRRVALET-GKVE-----AINQMEGSYFGEGLTLLGEKLFQVTWL 168 (346)
Q Consensus 107 TqGL~~-------~~d~-~LyeStGlyg----~s~V~~iDl~T-gkv~-----~~~~l~~~~FgeGit~~g~~LY~ltw~ 168 (346)
..+|++ ++++ +||++.-.++ ...|.+++.+. |++. ..+.-..+++|..+...+++||++++.
T Consensus 188 p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~ 267 (496)
T 3kya_A 188 IRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYE 267 (496)
T ss_dssp EEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETT
T ss_pred CcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECC
Confidence 369999 8887 4999976432 23588888655 4442 223222355443333345899999999
Q ss_pred CCEEEEEECC-------CCcE-----------EEE-EecC---CCceeEEeeCCCEEEEEC-CCCeEEEEeC--CCCcEE
Q 019103 169 QKTGFIYDQN-------NLNK-----------LEE-FTHQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDP--QTLKVI 223 (346)
Q Consensus 169 ~~~v~V~D~~-------tl~~-----------i~t-i~~~---~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp--~T~kvi 223 (346)
++.+++||++ +.+. .++ +..+ .|.+.++++||+.||++| +.++|+.+|+ .+.++.
T Consensus 268 ~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~ 347 (496)
T 3kya_A 268 KGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI 347 (496)
T ss_dssp TTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC
T ss_pred CCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec
Confidence 9999999987 5554 223 2332 467788899999999999 6889999764 444332
Q ss_pred E-EEEecc---CCe--------eeeecee-eEe--------eCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchh---h
Q 019103 224 R-KDIVRY---KGR--------EVRNLNE-LEF--------IKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLR---E 279 (346)
Q Consensus 224 ~-~I~V~~---~G~--------pv~~lNE-LE~--------~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~---~ 279 (346)
. ++-.+. .|. .+..+.. +-. .+|.||++.+..++|.+||+ +|.|....-..... +
T Consensus 348 ~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~ 426 (496)
T 3kya_A 348 TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLAD 426 (496)
T ss_dssp CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHH
T ss_pred ccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccC
Confidence 1 222332 111 1222331 222 24789999999999999995 78765443221100 0
Q ss_pred ----hhhh---ccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeeccccccCC
Q 019103 280 ----RLVA---AGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKDG 329 (346)
Q Consensus 280 ----~~~~---~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~~~~~ 329 (346)
...+ +.....+.|.|||++++++.|||+...-.+|.+|.+..-...++.|
T Consensus 427 ~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~~~ 483 (496)
T 3kya_A 427 GNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDE 483 (496)
T ss_dssp SCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC------
T ss_pred ccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccccCC
Confidence 0000 0012246799999999888999999999999999997644444444
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-09 Score=99.53 Aligned_cols=207 Identities=15% Similarity=0.136 Sum_probs=133.9
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEe-CCEEEEEEeeC-
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLL-GEKLFQVTWLQ- 169 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~-g~~LY~ltw~~- 169 (346)
-+...+++. ...+..|++++++|+||++.. ....|.+||++++++..... .+.. ..+++.+ ++++|+++..+
T Consensus 34 ~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~--~~~i~~~~dg~l~v~~~~~~ 108 (333)
T 2dg1_A 34 AEPWLEISK-KGLQLEGLNFDRQGQLFLLDV--FEGNIFKINPETKEIKRPFVSHKAN--PAAIKIHKDGRLFVCYLGDF 108 (333)
T ss_dssp CEEEEEEES-SCCCEEEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECSSSS--EEEEEECTTSCEEEEECTTS
T ss_pred cceeEEEec-cCccccCcEECCCCCEEEEEC--CCCEEEEEeCCCCcEEEEeeCCCCC--cceEEECCCCcEEEEeCCCC
Confidence 334445543 344558999999999998755 34599999999998766442 2333 4567775 45799999877
Q ss_pred ---CEEEEEECCCCcEEEEEec---C-CCceeEEeeCCCEEEEECC-------CCeEEEEeCCCCcEEEEEEeccCCeee
Q 019103 170 ---KTGFIYDQNNLNKLEEFTH---Q-MKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREV 235 (346)
Q Consensus 170 ---~~v~V~D~~tl~~i~ti~~---~-~peGwGLt~Dg~~LyvSdG-------s~~l~vIDp~T~kvi~~I~V~~~G~pv 235 (346)
+.++++|+++.+....+.. . .+.+..+++||+ +|+++. ...|+.+|+++.+......- .
T Consensus 109 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~ 181 (333)
T 2dg1_A 109 KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN------I 181 (333)
T ss_dssp SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE------E
T ss_pred CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecC------C
Confidence 7999999988776533321 1 234556677775 666543 46899999987665432211 1
Q ss_pred eeceeeEee-CC-EEEEEecCCCeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 236 RNLNELEFI-KG-EVWANVWQTDCIARISHED-GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 236 ~~lNELE~~-~G-~LyaNv~~sn~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
...|.+.+. +| .||+.....+.|.++|+++ |+.+..+.-.... .......|+||+++++++ +||+...-.
T Consensus 182 ~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~------~~~~~~~~~~i~~d~~G~-l~v~~~~~~ 254 (333)
T 2dg1_A 182 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY------YFTGHEGPDSCCIDSDDN-LYVAMYGQG 254 (333)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE------ECCSSSEEEEEEEBTTCC-EEEEEETTT
T ss_pred CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE------ecCCCCCCCceEECCCCC-EEEEEcCCC
Confidence 223456554 45 6999887788999999974 5543322100000 001124789999999875 888865556
Q ss_pred cEEEEE
Q 019103 313 KLYEIN 318 (346)
Q Consensus 313 ~l~ev~ 318 (346)
.|+.+.
T Consensus 255 ~v~~~d 260 (333)
T 2dg1_A 255 RVLVFN 260 (333)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 777664
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-10 Score=118.55 Aligned_cols=181 Identities=13% Similarity=0.088 Sum_probs=121.0
Q ss_pred EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcE-EEEEec--CCCc
Q 019103 118 LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNK-LEEFTH--QMKD 192 (346)
Q Consensus 118 LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~-i~ti~~--~~pe 192 (346)
|++++. ..|+++|++..+......++.-..+.|++.+ +++||.+++.++++++++.+.... ...+.. ..|+
T Consensus 12 ~~~~~~----~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~ 87 (619)
T 3s94_A 12 LLYANR----RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 87 (619)
T ss_dssp EEEECS----SBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE
T ss_pred EEEecc----ccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC
Confidence 566654 5999999997643333333333335667665 789999999999999999876543 223333 3689
Q ss_pred eeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCC-CeEEEEeCCCCeE
Q 019103 193 GWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQT-DCIARISHEDGVV 268 (346)
Q Consensus 193 GwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~s-n~I~vID~~TG~V 268 (346)
|.++++.++.||++| +.++|.++|+..... +.+.-.. +..++.|.++ +|+||++.|.. ..|.+++++-...
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-~~l~~~~----l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KVLFWQE----LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS----CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECCCCCE-EEEEeCC----CCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 999999999999999 588999999875432 2222122 2234456664 68999999974 5788888864332
Q ss_pred EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 269 LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 269 v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
...+.- ....|||||+|+++++||++...-..|+.+.+.
T Consensus 163 ~~l~~~-------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d 201 (619)
T 3s94_A 163 FIIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 201 (619)
T ss_dssp EEEECS-------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSS
T ss_pred EEEEeC-------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC
Confidence 222211 123689999999999999999988999988764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-09 Score=98.72 Aligned_cols=193 Identities=12% Similarity=0.113 Sum_probs=124.7
Q ss_pred CCcceeEEEecCCEEEEE-------cCCCCCCeEEEEECCCCcEEEEec-----cCCCeeEEEEEEeC--CEEEEEEeeC
Q 019103 104 RAFTQGLLYAENDTLFES-------TGLYGRSSVRRVALETGKVEAINQ-----MEGSYFGEGLTLLG--EKLFQVTWLQ 169 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeS-------tGlyg~s~V~~iDl~Tgkv~~~~~-----l~~~~FgeGit~~g--~~LY~ltw~~ 169 (346)
-.+.+|++++++|.||++ .. ....|.+||+++|++..... .... ..+++.+. ++||+++..
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~--~~~i~~~~~~g~l~v~~~~- 91 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGK--PAGEILRIDLKTGKKTVICKPEVNGYGGI--PAGCQCDRDANQLFVADMR- 91 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTE--ECCEEEEECTTTCCEEEEECCEETTEECC--EEEEEECSSSSEEEEEETT-
T ss_pred CCCccCceECCCCCEEEEEeccccCCC--CCCEEEEEeCCCCcEEEEEecccCCCCCC--CceEEEecCCCcEEEEECC-
Confidence 445589999999999988 33 34689999999998754332 1123 45677753 689999874
Q ss_pred CEEEEEECCCCcEEEE-Eec------CCCceeEEeeCCCEEEEEC-CC---------------CeEEEEeCCCCcEEEEE
Q 019103 170 KTGFIYDQNNLNKLEE-FTH------QMKDGWGLATDGKVLFGSD-GS---------------SMLYQIDPQTLKVIRKD 226 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~t-i~~------~~peGwGLt~Dg~~LyvSd-Gs---------------~~l~vIDp~T~kvi~~I 226 (346)
+.++++|++ .+.... ... ..+.+..+++|| .+|+++ +. +.|+.+|++ .+.....
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 489999988 655432 221 124566667777 567766 33 689999987 6654332
Q ss_pred EeccCCeeeeeceeeEee-----CC-EEEEEecCCCeEEEEeCC-CCeEEEEEECCchhhhhhhccCCCC-ceeeEEEEe
Q 019103 227 IVRYKGREVRNLNELEFI-----KG-EVWANVWQTDCIARISHE-DGVVLGWVLLPNLRERLVAAGYNGI-DVLNGIAWD 298 (346)
Q Consensus 227 ~V~~~G~pv~~lNELE~~-----~G-~LyaNv~~sn~I~vID~~-TG~Vv~~I~l~~l~~~~~~~~~~~~-~vlNGIA~d 298 (346)
.. ....|.+.+. +| .||++....+.|.++|++ +|++...-.+..+. ... ..|+||+++
T Consensus 169 ~~------~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--------~~~~~~p~~i~~d 234 (314)
T 1pjx_A 169 TA------FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP--------GTHEGGADGMDFD 234 (314)
T ss_dssp EE------ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC--------CCSSCEEEEEEEB
T ss_pred cC------CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC--------CCCCCCCCceEEC
Confidence 21 1123445554 45 699998888999999987 67643211110111 011 468999999
Q ss_pred CCCCEEEEecCCCCcEEEEEE
Q 019103 299 SNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 299 ~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+++ ++||+...-..|+.+..
T Consensus 235 ~~G-~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 235 EDN-NLLVANWGSSHIEVFGP 254 (314)
T ss_dssp TTC-CEEEEEETTTEEEEECT
T ss_pred CCC-CEEEEEcCCCEEEEEcC
Confidence 987 68888654556776643
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=129.15 Aligned_cols=160 Identities=11% Similarity=0.030 Sum_probs=115.4
Q ss_pred ceeEEEe-cCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEE--eCCEEEEEEeeC-CEEEEEECCC--
Q 019103 107 TQGLLYA-ENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTL--LGEKLFQVTWLQ-KTGFIYDQNN-- 179 (346)
Q Consensus 107 TqGL~~~-~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~--~g~~LY~ltw~~-~~v~V~D~~t-- 179 (346)
..||+++ .++.||++.. +.++|.++|++...+...+..+ ..| .||++ .+++||+++|.. ++|.++|.+.
T Consensus 455 P~glavD~~~g~LY~tD~--~~~~I~v~d~dg~~~~~l~~~~~~~P--~giavDp~~g~ly~td~~~~~~I~~~~~dG~~ 530 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFREQGSKP--RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 530 (699)
T ss_dssp CCCEECCCSSSBCEECCT--TTSCEEEEBSSSCCEEEECCCSSCCC--CCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred cceEEEEeeCCcEEEEec--cCCeEEEEecCCCceEEEEeCCCCCc--ceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence 3699998 4568999965 6679999999876554443322 233 55666 468999999986 8999988753
Q ss_pred CcEEEEEecCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEec-cCCeeeeeceeeEeeCCEEEEEecCCCe
Q 019103 180 LNKLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR-YKGREVRNLNELEFIKGEVWANVWQTDC 257 (346)
Q Consensus 180 l~~i~ti~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~-~~G~pv~~lNELE~~~G~LyaNv~~sn~ 257 (346)
.+.+..-....|.|.++++++++||++| +.++|+++|+.......-+... ..+.|+. |.+..++||++.|..+.
T Consensus 531 ~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~g----lavd~~~lywtd~~~~~ 606 (699)
T 1n7d_A 531 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS----LAVFEDKVFWTDIINEA 606 (699)
T ss_dssp CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCC----CEEETTEEEEECSTTTC
T ss_pred eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceE----eEEECCEEEEEeCCCCe
Confidence 2222221233589999999999999999 5889999998753322111111 1234444 77778899999999999
Q ss_pred EEEEeCCCCeEEEEEEC
Q 019103 258 IARISHEDGVVLGWVLL 274 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l 274 (346)
|.+||+.+|+++..|.+
T Consensus 607 V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 607 IFSANRLTGSDVNLLAE 623 (699)
T ss_dssp EEEEETTTEEEEECCCT
T ss_pred EEEEEccCCCceEEeec
Confidence 99999999999988854
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-09 Score=112.00 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=136.8
Q ss_pred EEecCCCCcceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEe--CCEEEEEEeeCCEEE
Q 019103 98 EFPHDPRAFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLL--GEKLFQVTWLQKTGF 173 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~--g~~LY~ltw~~~~v~ 173 (346)
.+|...-.-..||+|++ +++||++.. +..+|.+++++...+...+..+ .. ++|++++ ++.||.+++..+.|.
T Consensus 30 ~~~~~~~~~~~~l~~d~~~~~lywtD~--~~~~I~r~~~~g~~~~~v~~~g~~~--P~GlAvD~~~~~LY~tD~~~~~I~ 105 (628)
T 4a0p_A 30 AIPLTGVKEASALDFDVTDNRIYWTDI--SLKTISRAFMNGSALEHVVEFGLDY--PEGMAVDWLGKNLYWADTGTNRIE 105 (628)
T ss_dssp ECCCCSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSC--CCEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEcCCCCceEEEEEECCCCEEEEEEC--CCCeEEEEECCCCCcEEEEeCCCCC--cceEEEEeCCCEEEEEECCCCEEE
Confidence 44543322337999996 569999976 5679999999876655444433 23 4667775 789999999999999
Q ss_pred EEECCCCcEEEEEe--cCCCceeEEeeCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCE
Q 019103 174 IYDQNNLNKLEEFT--HQMKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGE 247 (346)
Q Consensus 174 V~D~~tl~~i~ti~--~~~peGwGLt~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~ 247 (346)
++|.+......-+. ...|.|.++.|.++.||+|| | ..+|..+|+...... .+ +.. +..+|.|.++ +++
T Consensus 106 v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l-~~~----~~~P~GlalD~~~~~ 179 (628)
T 4a0p_A 106 VSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TL-VPN----VGRANGLTIDYAKRR 179 (628)
T ss_dssp EEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EE-ECS----CSSEEEEEEETTTTE
T ss_pred EEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EE-ECC----CCCcceEEEccccCE
Confidence 99986433211121 22577888888899999999 6 679999998654432 22 222 2244556665 689
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
||++....+.|.++|.+.+.. ..+. .. ...|.|||++. +++|+|...-..|+++.
T Consensus 180 LY~aD~~~~~I~~~d~dG~~~-~v~~-~~------------l~~P~glav~~--~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 180 LYWTDLDTNLIESSNMLGLNR-EVIA-DD------------LPHPFGLTQYQ--DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp EEEEETTTTEEEEEETTSCSC-EEEE-EC------------CSCEEEEEEET--TEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCEEEEEcCCCCce-EEee-cc------------CCCceEEEEEC--CEEEEecCCCCEEEEEE
Confidence 999999999999999976544 2221 01 23689999985 69999987678888876
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=99.21 E-value=9.3e-12 Score=130.86 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=126.0
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCC----CcEEEEEec--
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNN----LNKLEEFTH-- 188 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~t----l~~i~ti~~-- 188 (346)
.||+++. ..|+++|++++++...+.....+ +|++++ +++||+++...++|+++|+++ ......+..
T Consensus 379 ~ll~~~~----~~I~~id~~~~~~~~~~~~~~~p--~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~ 452 (699)
T 1n7d_A 379 YLFFTNR----HEVRKMTLDRSEYTSLIPNLRNV--VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 452 (699)
T ss_dssp CBCCCCT----TC-CEECTTSCCEECCSCCCTTC--CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC
T ss_pred eEEecCc----cceEEEeCCCCcceeeeccCcce--EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC
Confidence 4566644 48999999998887666554555 456664 689999999999999999876 233233322
Q ss_pred CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe--eCCEEEEEecCC-CeEEEEeCC
Q 019103 189 QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF--IKGEVWANVWQT-DCIARISHE 264 (346)
Q Consensus 189 ~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~--~~G~LyaNv~~s-n~I~vID~~ 264 (346)
..|+|.++.+.++.||++| +.+.|.++|+....+...+..+ ...| +.|.+ .+|+||++.|.. +.|.++|++
T Consensus 453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~-~~~P----~giavDp~~g~ly~td~~~~~~I~~~~~d 527 (699)
T 1n7d_A 453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQ-GSKP----RAIVVDPVHGFMYWTDWGTPAKIKKGGLN 527 (699)
T ss_dssp --CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCS-SCCC----CCEECCSSSSCCEECCCSSSCCEEBCCSS
T ss_pred CCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCC-CCCc----ceEEEccCCCcEEEcccCCCCeEEEEeCC
Confidence 2478888888899999999 5889999998865443222221 1223 34554 478999999876 789999886
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
.... ..+-. .....|||||+|+++++||++...-.+|+.+.+.
T Consensus 528 G~~~-~~l~~------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 528 GVDI-YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp SCCC-CEESC------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS
T ss_pred CCCe-eEEEe------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccC
Confidence 4322 22211 1134689999999999999999888899988774
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.9e-08 Score=89.20 Aligned_cols=186 Identities=12% Similarity=0.016 Sum_probs=131.6
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
...+.+++++.++.+.+ .+..|.+||+.+++.+......... ...++. +++.|+. .-.++.+.++|.++.+.+.
T Consensus 144 i~~~~~~~~~~~l~~~~--~dg~v~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~-~~~dg~i~~~d~~~~~~~~ 219 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISNDGTKLWT-GGLDNTVRSWDLREGRQLQ 219 (337)
T ss_dssp EEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEE-EETTSEEEEEETTTTEEEE
T ss_pred eEEEEECCCCCEEEEEe--CCCcEEEEeCCCCceeeeeecccCc-eEEEEECCCCCEEEE-EecCCcEEEEECCCCceEe
Confidence 47899999887666655 4468999999999988887643322 233455 4445554 4468999999999999999
Q ss_pred EEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEe
Q 019103 185 EFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARIS 262 (346)
Q Consensus 185 ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID 262 (346)
++... ......+++|++.|+++..++.|.++|..+.+.. ....+..+ +..+.+. +|+.++....++.|.+.|
T Consensus 220 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~---~~~~~~~~---v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY---QLHLHESC---VLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE---EECCCSSC---EEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE---EEcCCccc---eeEEEECCCCCEEEEecCCCcEEEEE
Confidence 98875 2355567889999999887889999999988754 22222222 2345555 565555555688999999
Q ss_pred CCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 263 HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 263 ~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
..+++.+..... ....+.++|+|+++.|++++. .+.|+--
T Consensus 294 ~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~-dg~i~iw 333 (337)
T 1gxr_A 294 TPYGASIFQSKE--------------SSSVLSCDISVDDKYIVTGSG-DKKATVY 333 (337)
T ss_dssp TTTCCEEEEEEC--------------SSCEEEEEECTTSCEEEEEET-TSCEEEE
T ss_pred CCCCeEEEEecC--------------CCcEEEEEECCCCCEEEEecC-CCeEEEE
Confidence 999998755422 124688999999988776654 4544433
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-09 Score=101.42 Aligned_cols=195 Identities=9% Similarity=0.051 Sum_probs=137.7
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
......+.|++||+++.+.+ .+..|++||+.+++.+....- ........+..++..++++.-.++.+.++|..+.+.
T Consensus 127 ~~~V~~v~~spdg~~l~sgs--~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~ 204 (344)
T 4gqb_B 127 DDIVSTVSVLSSGTQAVSGS--KDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP 204 (344)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC
T ss_pred CCCEEEEEECCCCCEEEEEe--CCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce
Confidence 34457999999998888877 456999999999998887753 233333333345566777777889999999999999
Q ss_pred EEEEecCC----CceeEEeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecCC
Q 019103 183 LEEFTHQM----KDGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQT 255 (346)
Q Consensus 183 i~ti~~~~----peGwGLt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~s 255 (346)
+.++.... .....+++++..+++ ...+++|.++|.++.+.+.++.... .+ ++.+.+. +| ++.|+.-.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~--~~---v~~v~fsp~g~~~lasgs~D 279 (344)
T 4gqb_B 205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS--QC---VTGLVFSPHSVPFLASLSED 279 (344)
T ss_dssp EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCS--SC---EEEEEECSSSSCCEEEEETT
T ss_pred eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCC--CC---EEEEEEccCCCeEEEEEeCC
Confidence 98886431 123445666665555 4567899999999999888776533 23 3356665 44 677777678
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.+|.+-|..+++++... + + .+..+++||+|+++.+++||-...+|..=.+
T Consensus 280 ~~i~vwd~~~~~~~~~~---~-------H----~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 280 CSLAVLDSSLSELFRSQ---A-------H----RDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp SCEEEECTTCCEEEEEC---C-------C----SSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CeEEEEECCCCcEEEEc---C-------C----CCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 89999999999875421 1 1 1246889999999999999887777754443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.5e-10 Score=103.45 Aligned_cols=154 Identities=6% Similarity=0.021 Sum_probs=109.4
Q ss_pred CcceeEEEec-CCEEEEEcCC---------------CCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEE
Q 019103 105 AFTQGLLYAE-NDTLFESTGL---------------YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVT 166 (346)
Q Consensus 105 ~FTqGL~~~~-d~~LyeStGl---------------yg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~lt 166 (346)
.+..++++++ +|+||++... .....|.++|.+++++.....-- .++.|++++ ++.||+++
T Consensus 126 ~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~--~~p~gia~~~dg~~lyv~d 203 (322)
T 2fp8_A 126 KWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKEL--HVPGGAEVSADSSFVLVAE 203 (322)
T ss_dssp SCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEE--SCCCEEEECTTSSEEEEEE
T ss_pred cccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCC--ccCcceEECCCCCEEEEEe
Confidence 3457999999 9999998642 12368999999999865433211 223456664 56899999
Q ss_pred eeCCEEEEEECCCC-----cEEEEEecCCCceeEEeeCCCEEEEEC-C----------CCeEEEEeCCCCcEEEEEEecc
Q 019103 167 WLQKTGFIYDQNNL-----NKLEEFTHQMKDGWGLATDGKVLFGSD-G----------SSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 167 w~~~~v~V~D~~tl-----~~i~ti~~~~peGwGLt~Dg~~LyvSd-G----------s~~l~vIDp~T~kvi~~I~V~~ 230 (346)
..++.|.+||.++. +.....+ + |.|..+++||+ ||+++ + .+.|..+|++ ++++..+....
T Consensus 204 ~~~~~I~~~~~~~~~~~~~~~~~~~~-g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~ 279 (322)
T 2fp8_A 204 FLSHQIVKYWLEGPKKGTAEVLVKIP-N-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPP 279 (322)
T ss_dssp GGGTEEEEEESSSTTTTCEEEEEECS-S-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCT
T ss_pred CCCCeEEEEECCCCcCCccceEEeCC-C-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCC
Confidence 99999999998742 2223221 3 77777788885 99987 3 3689999985 78888887753
Q ss_pred CCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCC
Q 019103 231 KGREVRNLNELEFIKGEVWANVWQTDCIARISHED 265 (346)
Q Consensus 231 ~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~T 265 (346)
|.++..+..+...+|+||+.....+.|.+++++.
T Consensus 280 -g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 280 -PFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -TTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred -CCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 3333444445567899999999999999999864
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-09 Score=108.83 Aligned_cols=192 Identities=10% Similarity=0.022 Sum_probs=128.6
Q ss_pred cceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcE
Q 019103 106 FTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 106 FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
...||++++ +++||++.- ...+|.+++++.......+...+-..++|++++ +++||+++...+.|.++|.+....
T Consensus 41 ~~~~ld~~~~~~~ly~sD~--~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDV--SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CEEEEEEETTTTEEEEEET--TTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred ceEEEEEEeCCCEEEEEEC--CCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 347999996 568999965 567999999987642222222221235778886 689999999999999999875432
Q ss_pred EEEEe--cCCCceeEEeeCCCEEEEEC-C-CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCC
Q 019103 183 LEEFT--HQMKDGWGLATDGKVLFGSD-G-SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTD 256 (346)
Q Consensus 183 i~ti~--~~~peGwGLt~Dg~~LyvSd-G-s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn 256 (346)
..-+. ...|.|.++.+.++.||+|| | ...|...++..-. ...+ +.. .+..+|-|..+ +++||++....+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-~~~l-~~~---~~~~P~Glald~~~~~LY~aD~~~~ 193 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFII-INS---EIYWPNGLTLDYEEQKLYWADAKLN 193 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEE-ECS---SCSSEEEEEEETTTTEEEEEETTTC
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-eEEE-EeC---CCCCCcEEEEEccCCEEEEEeCCCC
Confidence 22221 23588999999999999999 6 4689999876432 2222 222 12344556665 789999999999
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.|.++|.+.......+.- ....|.|||++++ ++|+|.-....|+.+..
T Consensus 194 ~I~~~~~dG~~~~~~~~~-------------~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 194 FIHKSNLDGTNRQAVVKG-------------SLPHPFALTLFED--ILYWTDWSTHSILACNK 241 (619)
T ss_dssp CEEEESSSCCEEC----------------------CCCEEESSS--EEEEECTTTCSEEEEES
T ss_pred eEEEecCCCCccEEEEeC-------------CCCCceEEEEeCC--EEEEecCCCCEEEEEEC
Confidence 999999976543322210 1235789999855 99999777788888764
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-09 Score=111.56 Aligned_cols=203 Identities=9% Similarity=0.058 Sum_probs=136.8
Q ss_pred eeEEEec--CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC----CeeEEEE-------EEeCCEEEEEEeeC-----
Q 019103 108 QGLLYAE--NDTLFESTGLYGRSSVRRVALETGKVEAINQMEG----SYFGEGL-------TLLGEKLFQVTWLQ----- 169 (346)
Q Consensus 108 qGL~~~~--d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~----~~FgeGi-------t~~g~~LY~ltw~~----- 169 (346)
.||+|+| +++||++.. +...|+++|++++++......+. ++++..+ +.++++||+++|.+
T Consensus 142 ~~la~dp~~~~~Lyv~~~--~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYD--GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp EEEEEETTEEEEEEEEEE--TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CEEEEccCCCCEEEEEEC--CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 5999997 358999976 45689999999999887766543 4555444 55678899999987
Q ss_pred -CEEEEEECCC-CcEE-----EEEe-cCCCceeEEeeCCCEEEEEC-CCCeEEEEeCC-------CCcE-----------
Q 019103 170 -KTGFIYDQNN-LNKL-----EEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ-------TLKV----------- 222 (346)
Q Consensus 170 -~~v~V~D~~t-l~~i-----~ti~-~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~-------T~kv----------- 222 (346)
+.++++|++. ++.. ..++ +..|.|..+++++++||++| +.++|+.+|++ +.++
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 3489998655 2221 2232 23578888999999999999 68899999998 6654
Q ss_pred EEE-EEeccCCeeeeeceeeEee-CC-EEEEEecCCCeEEEEeC--CCCeEE--EEE-EC---CchhhhhhhccCCCCce
Q 019103 223 IRK-DIVRYKGREVRNLNELEFI-KG-EVWANVWQTDCIARISH--EDGVVL--GWV-LL---PNLRERLVAAGYNGIDV 291 (346)
Q Consensus 223 i~~-I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~sn~I~vID~--~TG~Vv--~~I-~l---~~l~~~~~~~~~~~~~v 291 (346)
.+. ..++..+.|.+ +.+. +| +||++.+..++|.+||. .++++. .++ -. .+...... .....+.
T Consensus 300 ~~~l~~~~~~~~p~~----ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~--~~a~f~~ 373 (496)
T 3kya_A 300 FKQLFTIADPSWEFQ----IFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVG--TEARMNN 373 (496)
T ss_dssp EEEEEECSSSSCCEE----EEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBG--GGCBCSS
T ss_pred cceeEecCCCCCceE----EEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcc--cccccCC
Confidence 223 34544344544 5454 44 69999999999999765 556542 111 11 01000000 0122457
Q ss_pred ee-EEEEeC------CCCEEEEecCCCCcEEEEE
Q 019103 292 LN-GIAWDS------NRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 292 lN-GIA~d~------~~~~LfVTGK~Wp~l~ev~ 318 (346)
|. |++.+. ....|||+...-..|.++.
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~ 407 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT 407 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe
Confidence 89 888873 4568999988888888875
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.3e-09 Score=95.12 Aligned_cols=152 Identities=15% Similarity=0.180 Sum_probs=111.8
Q ss_pred CeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEE
Q 019103 149 SYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVI 223 (346)
Q Consensus 149 ~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi 223 (346)
..++||++.+ ++.||.++..++.++++|+++. ...+... .+.+..+++||+ ||+++ +.+.|.++|+++++..
T Consensus 27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEECSTTCCEE
T ss_pred CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEcCCCCcEE
Confidence 4578999986 4569999999999999999987 5666543 355666677777 56665 6789999999888865
Q ss_pred EEEEeccCCeeeeeceeeEee-CCEEEEEec-----------------CCCeEEEEeCCCCeEEEEEECCchhhhhhhcc
Q 019103 224 RKDIVRYKGREVRNLNELEFI-KGEVWANVW-----------------QTDCIARISHEDGVVLGWVLLPNLRERLVAAG 285 (346)
Q Consensus 224 ~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~-----------------~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~ 285 (346)
... -...+.+...+|.+.+. +|++|++.. ..+.|.++|++ |++.....
T Consensus 104 ~~~-~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~------------ 169 (296)
T 3e5z_A 104 SIA-DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR------------ 169 (296)
T ss_dssp EEE-CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC------------
T ss_pred EEe-eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec------------
Confidence 332 22344555567777766 689999742 13589999998 77643321
Q ss_pred CCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 286 YNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 286 ~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
....+||||++|+++.+ +++..-..|+...+.
T Consensus 170 --~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 170 --DRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLN 201 (296)
T ss_dssp --CCSSEEEEEECTTSCEE-EEETTTTEEEEEEEC
T ss_pred --CCCCCccEEECCCCCEE-EEeCCCCeEEEEEEC
Confidence 12368999999999999 998888899888774
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6.7e-09 Score=98.29 Aligned_cols=196 Identities=11% Similarity=0.068 Sum_probs=136.9
Q ss_pred cceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCc-------EEEEecc-CCCeeEEEEEEe--CCEEEEEEeeCCEEEE
Q 019103 106 FTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGK-------VEAINQM-EGSYFGEGLTLL--GEKLFQVTWLQKTGFI 174 (346)
Q Consensus 106 FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgk-------v~~~~~l-~~~~FgeGit~~--g~~LY~ltw~~~~v~V 174 (346)
....+.+++ ++.++.+++ .+..|++||+.+++ .+..+.- .... ..++.. ++.++++.-.++.+.+
T Consensus 83 ~V~~~~~~p~~~~~l~s~s--~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~p~~~~~l~s~~~dg~i~i 158 (402)
T 2aq5_A 83 PVLDIAWCPHNDNVIASGS--EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV--GIVAWHPTAQNVLLSAGCDNVILV 158 (402)
T ss_dssp CEEEEEECTTCTTEEEEEE--TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE--EEEEECSSBTTEEEEEETTSCEEE
T ss_pred CEEEEEeCCCCCCEEEEEe--CCCeEEEEEccCCCCccccCCceEEecCCCCeE--EEEEECcCCCCEEEEEcCCCEEEE
Confidence 347899998 777777777 45699999999983 3333332 2233 334443 4346666667899999
Q ss_pred EECCCCcEEEEEe--c-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEE
Q 019103 175 YDQNNLNKLEEFT--H-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVW 249 (346)
Q Consensus 175 ~D~~tl~~i~ti~--~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~Ly 249 (346)
+|..+.+.+.++. . . .-....+++||+.|+++..++.|.++|+++.+.+.++..+..+.. ...+.+. +|+++
T Consensus 159 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l 235 (402)
T 2aq5_A 159 WDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR---PVHAVFVSEGKIL 235 (402)
T ss_dssp EETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS---CCEEEECSTTEEE
T ss_pred EECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc---ceEEEEcCCCcEE
Confidence 9999999999994 2 2 124455778999999988889999999999999888754332221 1234444 67776
Q ss_pred EEe---cCCCeEEEEeCCCCeE-EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 250 ANV---WQTDCIARISHEDGVV-LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 250 aNv---~~sn~I~vID~~TG~V-v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+.. ..++.|.+.|..+++. +....+. .......++|+|+++.||++|.....|+-.++.
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELD------------TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECC------------CCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred EEeccCCCCceEEEEcCccccCCceEEecc------------CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 665 4677899999999764 3333221 112357799999999999999888877776664
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-08 Score=90.94 Aligned_cols=196 Identities=10% Similarity=0.025 Sum_probs=136.6
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee----C
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL----Q 169 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~----~ 169 (346)
+.+.++... ......+.+++++.++.+++ .+..|.+||+.+++.+.....+.......+..+++.++..... +
T Consensus 65 ~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 65 ERLGTLDGH-TGTIWSIDVDCFTKYCVTGS--ADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp CEEEEECCC-SSCEEEEEECTTSSEEEEEE--TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred hhhhhhhhc-CCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCC
Confidence 455666522 23347999999887777766 4569999999999999998866665444444455655555433 3
Q ss_pred CEEEEEECCCCcEEEEEe-----------cC----CCceeEEeeCCCEEEEECCCCeEEEEeCCC-CcEEEEEEeccCCe
Q 019103 170 KTGFIYDQNNLNKLEEFT-----------HQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQT-LKVIRKDIVRYKGR 233 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~-----------~~----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T-~kvi~~I~V~~~G~ 233 (346)
+.+.++|..+.+....+. .. ......+++|++.|+++..++.|.++|..+ .+.+..+.... .
T Consensus 142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~ 219 (369)
T 3zwl_B 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE--K 219 (369)
T ss_dssp CEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS--S
T ss_pred CEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC--C
Confidence 899999987664332222 11 123344678999999988889999999998 77777776533 2
Q ss_pred eeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC
Q 019103 234 EVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW 311 (346)
Q Consensus 234 pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W 311 (346)
++ ..+.+. +|..++..-.++.|.+.|..+++.+..+... ...+.++++|+++.+++++..-
T Consensus 220 ~v---~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 220 SI---SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD--------------CPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp CE---EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--------------SCEEEEEECSSSSEEEEEECCC
T ss_pred ce---eEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCC--------------CCceeEEecCCCceEEEeecCC
Confidence 22 345554 5555555556889999999999999988631 2457899999999999887654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-08 Score=95.01 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=124.8
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC--CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCC-Cc
Q 019103 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-KD 192 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~--~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~-pe 192 (346)
++++++.. +++.|.+||.+||+++-+++.+. .+...-++.. +++|+ + .++.+..+|+ +++++.++..+. .+
T Consensus 5 ~~~lv~~~--~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd-G~ilv-s-~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 5 QHLLVGGS--GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA-GEILF-S-YSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CEEEEECT--TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT-SCEEE-E-CBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CcEEEeeC--CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC-CCEEE-e-CCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 56666655 67899999999999999998764 3333333334 45666 3 3688999999 899999998741 12
Q ss_pred --eeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEEEEeccCC-eeeeeceeeE-eeCCEEEEEecCCCeEEEEeCCCCe
Q 019103 193 --GWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRKDIVRYKG-REVRNLNELE-FIKGEVWANVWQTDCIARISHEDGV 267 (346)
Q Consensus 193 --GwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~I~V~~~G-~pv~~lNELE-~~~G~LyaNv~~sn~I~vID~~TG~ 267 (346)
+....+||+.+++..+ ..+|+.+|+ +++++.++.+.... .+......+. ..+|.++++....+.|..+|++ |+
T Consensus 79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 79 MQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 3346678998887555 789999997 78999888875321 1111111122 2378888888889999999999 99
Q ss_pred EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 268 VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 268 Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
++-++..+. .+.+++..++++.+ |++-...+|+++..
T Consensus 157 ~~w~~~~~~--------------~~~~~~~~~~g~~~-v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 157 LLNSVKLSG--------------TPFSSAFLDNGDCL-VACGDAHCFVQLNL 193 (276)
T ss_dssp EEEEEECSS--------------CCCEEEECTTSCEE-EECBTTSEEEEECT
T ss_pred EEEEEECCC--------------CccceeEcCCCCEE-EEeCCCCeEEEEeC
Confidence 998886621 34667777776644 44444456766653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-08 Score=90.32 Aligned_cols=197 Identities=12% Similarity=0.113 Sum_probs=138.8
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~ 171 (346)
+.+.++...+.. ...+.|+||+..+.+.+ .+..|.+||+.+++....+..... +...++. +++.|. +.-.++.
T Consensus 113 ~~~~~~~~~~~~-~~~~~~spdg~~l~~g~--~dg~v~i~~~~~~~~~~~~~~~~~-~v~~~~~spdg~~la-sg~~dg~ 187 (321)
T 3ow8_A 113 KQIKSIDAGPVD-AWTLAFSPDSQYLATGT--HVGKVNIFGVESGKKEYSLDTRGK-FILSIAYSPDGKYLA-SGAIDGI 187 (321)
T ss_dssp EEEEEEECCTTC-CCCEEECTTSSEEEEEC--TTSEEEEEETTTCSEEEEEECSSS-CEEEEEECTTSSEEE-EEETTSC
T ss_pred CEEEEEeCCCcc-EEEEEECCCCCEEEEEc--CCCcEEEEEcCCCceeEEecCCCc-eEEEEEECCCCCEEE-EEcCCCe
Confidence 345555533322 25799999998777766 456999999999998777654432 2334444 444444 4456789
Q ss_pred EEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEE
Q 019103 172 GFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEV 248 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~L 248 (346)
+.++|..+.+.+.++... .-....++||++.|+.+..+.+|.++|.++.+.+.++.-.. .+ ++.+.+. +|..
T Consensus 188 i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~---v~~~~~sp~~~~ 262 (321)
T 3ow8_A 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA--SW---VLNVAFCPDDTH 262 (321)
T ss_dssp EEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS--SC---EEEEEECTTSSE
T ss_pred EEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC--Cc---eEEEEECCCCCE
Confidence 999999999999998742 22566788999999988888899999999998876654322 22 2345555 5666
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 249 WANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 249 yaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
++..-.+..|.+-|..+++.+.++.- -....++++|+|+++.|+.+| ....|
T Consensus 263 l~s~s~D~~v~iwd~~~~~~~~~~~~-------------h~~~v~~v~~s~~g~~l~s~~-~d~~i 314 (321)
T 3ow8_A 263 FVSSSSDKSVKVWDVGTRTCVHTFFD-------------HQDQVWGVKYNGNGSKIVSVG-DDQEI 314 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECC-------------CSSCEEEEEECTTSSEEEEEE-TTCCE
T ss_pred EEEEeCCCcEEEEeCCCCEEEEEEcC-------------CCCcEEEEEECCCCCEEEEEe-CCCeE
Confidence 66666788999999999999888732 112468899999998876555 34443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.9e-08 Score=88.39 Aligned_cols=202 Identities=11% Similarity=0.068 Sum_probs=135.1
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe---cc-CCCeeEEEEEEe--CCEEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN---QM-EGSYFGEGLTLL--GEKLFQV 165 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~---~l-~~~~FgeGit~~--g~~LY~l 165 (346)
..+.+...+|.... ..+.++++++++.+.+ +..|++||+.+++....+ .. +....-..++.. ++.|+.
T Consensus 41 ~~~~~~~~~h~~~v--~~~~~~~~~~~l~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~- 114 (337)
T 1gxr_A 41 HARQINTLNHGEVV--CAVTISNPTRHVYTGG---KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV- 114 (337)
T ss_dssp EEEEEEEECCSSCC--CEEEECSSSSEEEEEC---BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEE-
T ss_pred ccccceeccCCCce--EEEEEecCCcEEEEcC---CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEE-
Confidence 35566777885444 6999999998776655 459999999987632222 11 222223334443 444544
Q ss_pred EeeCCEEEEEECCCCc--EEEEEecCCC--ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019103 166 TWLQKTGFIYDQNNLN--KLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~--~i~ti~~~~p--eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
.-.++.+.++|.++.+ ....+..... ....+++|++.|++...++.|.++|.++.+.+.++.... .+ +..+
T Consensus 115 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~---i~~~ 189 (337)
T 1gxr_A 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DG---ASCI 189 (337)
T ss_dssp EESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SC---EEEE
T ss_pred EcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc--Cc---eEEE
Confidence 4567899999999887 4445543212 344567899999998888899999999998887765432 22 2345
Q ss_pred Eee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 242 EFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 242 E~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.+. +|..++....++.|.+.|.++++.+..+... .....++|+|+++.+++++. ...++-..+
T Consensus 190 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~~-~~~i~~~~~ 253 (337)
T 1gxr_A 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT--------------SQIFSLGYCPTGEWLAVGME-SSNVEVLHV 253 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--------------SCEEEEEECTTSSEEEEEET-TSCEEEEET
T ss_pred EECCCCCEEEEEecCCcEEEEECCCCceEeeecCC--------------CceEEEEECCCCCEEEEEcC-CCcEEEEEC
Confidence 555 5555555556889999999999998887541 13578999999988877654 344544443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-08 Score=88.06 Aligned_cols=201 Identities=11% Similarity=0.039 Sum_probs=139.5
Q ss_pred eEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCC
Q 019103 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQK 170 (346)
Q Consensus 93 ~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~ 170 (346)
+.+..++. | ......+.|++++.++.+++ .+..|++||+.+++....+.-.... -..++... +.+.++.-.++
T Consensus 13 ~~~~~~~~gh--~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 13 YALKFTLAGH--TKAVSSVKFSPNGEWLASSS--ADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp CEEEEEECCC--SSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSEEEEEETTS
T ss_pred ceeEEEEccc--CCcEEEEEECCCCCEEEEee--CCCeEEEEeCCCcccchhhccCCCc-eEEEEEcCCCCEEEEECCCC
Confidence 45555554 4 33347999999998777777 4569999999999988777543222 12344432 23444455689
Q ss_pred EEEEEECCCCcEEEEEecCCC--ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCE
Q 019103 171 TGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE 247 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~p--eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~ 247 (346)
.+.++|.++.+.+.++..... ....++++++.|+....+..|.++|.++.+.+.++.... .++ +.+.+. +|.
T Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v---~~~~~~~~~~ 162 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPV---SAVHFNRDGS 162 (312)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCE---EEEEECTTSS
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCC--CcE---EEEEEcCCCC
Confidence 999999999999998874311 334577899999888778899999999999887765532 232 345554 566
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
+++..-.++.|.+.|..+++.+..+... .....+.++|+|+++.|++++. ...+.-
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~-d~~i~i 218 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATL-DNTLKL 218 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCS------------SCCCEEEEEECTTSSEEEEEET-TTEEEE
T ss_pred EEEEEeCCCcEEEEECCCCceeeEEecc------------CCCceEEEEECCCCCEEEEEcC-CCeEEE
Confidence 6666656889999999999988776321 1224578999999988776654 344433
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.7e-08 Score=92.53 Aligned_cols=211 Identities=10% Similarity=0.062 Sum_probs=142.1
Q ss_pred ceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-----------------ee
Q 019103 89 SIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-----------------YF 151 (346)
Q Consensus 89 ~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-----------------~F 151 (346)
.....++.+.+.|... ...+.|+|||+++.+.. +..+++||..+|+.+..+.-... .+
T Consensus 51 ~~~~~~~~~~~~h~~~--V~~v~fspdg~~la~g~---~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (393)
T 1erj_A 51 REIDVELHKSLDHTSV--VCCVKFSNDGEYLATGC---NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125 (393)
T ss_dssp CCEEEEEEEEEECSSC--CCEEEECTTSSEEEEEC---BSCEEEEETTTCCEEEEECC-----------------CCCCB
T ss_pred cccCceeEEecCCCCE--EEEEEECCCCCEEEEEc---CCcEEEEEecCCCEEEEecCccccccccccccccccCCCcee
Confidence 3445677788878443 36999999998666533 35899999999998877643211 11
Q ss_pred EEEEEE--eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019103 152 GEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 152 geGit~--~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
-..++. +++.| ++.-.++.+.++|.++.+.+.++.... -....+++|++.|+.+..+.+|.++|.++.+...++.
T Consensus 126 v~~v~~s~dg~~l-~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 126 IRSVCFSPDGKFL-ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp EEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCCEE-EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence 223444 34444 445568999999999999988886321 1344567899999887788999999999999887776
Q ss_pred eccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019103 228 VRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 228 V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
.... ...+.+. +|.++|..-.++.|.+.|.++++++..+...... . ..-....+.++|+|+++.|+
T Consensus 205 ~~~~------v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~-~-----~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 205 IEDG------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES-G-----TGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp CSSC------EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTTSSEEE
T ss_pred cCCC------cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccC-C-----CCCCCCEEEEEECCCCCEEE
Confidence 5331 1223343 6777777767889999999999998888541110 0 01124578899999998775
Q ss_pred EecCCCCcEEEEE
Q 019103 306 VTGKLWPKLYEIN 318 (346)
Q Consensus 306 VTGK~Wp~l~ev~ 318 (346)
.. -...+|.--+
T Consensus 273 s~-s~d~~v~~wd 284 (393)
T 1erj_A 273 SG-SLDRSVKLWN 284 (393)
T ss_dssp EE-ETTSEEEEEE
T ss_pred EE-eCCCEEEEEE
Confidence 54 4445444433
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.7e-09 Score=94.73 Aligned_cols=152 Identities=14% Similarity=0.275 Sum_probs=109.4
Q ss_pred CeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEE
Q 019103 149 SYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVI 223 (346)
Q Consensus 149 ~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi 223 (346)
..++||...+ ++.||.++..++.++.+|+ +.+ ...+... .+.|..+++||+ ||+++ +.+.|+.+|++ .+..
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECCC-CCEE
Confidence 4468998875 5679999999999999998 444 3444332 356666777777 77765 67899999986 5543
Q ss_pred EEEEeccCCeeeeeceeeEee-CCEEEEEec-----------------CCCeEEEEeCCCCeEEEEEECCchhhhhhhcc
Q 019103 224 RKDIVRYKGREVRNLNELEFI-KGEVWANVW-----------------QTDCIARISHEDGVVLGWVLLPNLRERLVAAG 285 (346)
Q Consensus 224 ~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~-----------------~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~ 285 (346)
.+.-...+.+...+|.+.+. +|.+|++.. ..+.|.++|+++|++.... ++
T Consensus 120 -~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~-------- 187 (305)
T 3dr2_A 120 -LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DL-------- 187 (305)
T ss_dssp -EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EE--------
T ss_pred -EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cC--------
Confidence 33323356666677888777 789999641 1357999999999875433 21
Q ss_pred CCCCceeeEEEEeCCCCEEEEecCCC-----CcEEEEEEe
Q 019103 286 YNGIDVLNGIAWDSNRNRIFVTGKLW-----PKLYEINLR 320 (346)
Q Consensus 286 ~~~~~vlNGIA~d~~~~~LfVTGK~W-----p~l~ev~l~ 320 (346)
..|||||++|+++.|||+...- ..|+.+.+.
T Consensus 188 ----~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~ 223 (305)
T 3dr2_A 188 ----DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWR 223 (305)
T ss_dssp ----SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEE
T ss_pred ----CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEec
Confidence 2579999999999999997653 678887764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-08 Score=105.25 Aligned_cols=204 Identities=10% Similarity=0.073 Sum_probs=140.2
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-C----CeeEEEEEEeCCEEEEEEee-----CCEEEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-G----SYFGEGLTLLGEKLFQVTWL-----QKTGFIYD 176 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~----~~FgeGit~~g~~LY~ltw~-----~~~v~V~D 176 (346)
..|+++. ++++|+++. +..|..+|++||+++-+..++ . ..+...-.+.++++|+.+.. ++.++.||
T Consensus 121 ~~~~a~~-~~~v~v~~~---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D 196 (677)
T 1kb0_A 121 NRGVALW-KGKVYVGAW---DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYD 196 (677)
T ss_dssp CCCCEEE-TTEEEEECT---TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEE
T ss_pred CCCceEE-CCEEEEEcC---CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEE
Confidence 3578886 589999865 369999999999999888775 2 11111234568999998874 68999999
Q ss_pred CCCCcEEEEEecCCCc----------------------------------eeEEeeCCCEEEEECCC-------------
Q 019103 177 QNNLNKLEEFTHQMKD----------------------------------GWGLATDGKVLFGSDGS------------- 209 (346)
Q Consensus 177 ~~tl~~i~ti~~~~pe----------------------------------GwGLt~Dg~~LyvSdGs------------- 209 (346)
++|++++-++....+. ...++++++.+|+..++
T Consensus 197 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~ 276 (677)
T 1kb0_A 197 AETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKG 276 (677)
T ss_dssp TTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTC
T ss_pred CCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccC
Confidence 9999999999863111 23467789999997643
Q ss_pred ------CeEEEEeCCCCcEEEEEEeccC--------CeeeeeceeeEeeCC---EEEEEecCCCeEEEEeCCCCeEEEEE
Q 019103 210 ------SMLYQIDPQTLKVIRKDIVRYK--------GREVRNLNELEFIKG---EVWANVWQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 210 ------~~l~vIDp~T~kvi~~I~V~~~--------G~pv~~lNELE~~~G---~LyaNv~~sn~I~vID~~TG~Vv~~I 272 (346)
+.|+.+|++|++++-+.++..+ ..|+- -+.. .+| .+++..-....|.++|.+||+++..+
T Consensus 277 gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l--~~~~-~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 277 GDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMIL--ADIK-IAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp CCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEE--EEEE-ETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEE--Eecc-cCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 3699999999999988887432 11221 1111 256 34444445789999999999999988
Q ss_pred ECCchh----------hhh------------hhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 273 LLPNLR----------ERL------------VAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 273 ~l~~l~----------~~~------------~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
.+.... +.. .-.+........++||||+++.+||....++..|+.
T Consensus 354 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 420 (677)
T 1kb0_A 354 NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMD 420 (677)
T ss_dssp ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEE
T ss_pred cccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeec
Confidence 764311 000 000011223446899999999999987777666553
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-09 Score=103.96 Aligned_cols=163 Identities=15% Similarity=0.153 Sum_probs=119.5
Q ss_pred CCeeEEEEEEeC--CEEEEEEeeCCEEEEEECCCCcEEE-EEec----C----CCceeEE---eeCCCEEEE-EC-----
Q 019103 148 GSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLE-EFTH----Q----MKDGWGL---ATDGKVLFG-SD----- 207 (346)
Q Consensus 148 ~~~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl~~i~-ti~~----~----~peGwGL---t~Dg~~Lyv-Sd----- 207 (346)
.+.|+||+..+. +++|+.++.++.|.++|+.+..... .++. + .+.|.++ .++ ++||+ +|
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccc
Confidence 467899999985 9999999999999999998654433 3332 1 1245555 345 57776 66
Q ss_pred --------CCCeEEEEeCC---CCcEEEEEEecc--C------CeeeeeceeeEee-CCEEEEEecCC-CeEEEEeCCCC
Q 019103 208 --------GSSMLYQIDPQ---TLKVIRKDIVRY--K------GREVRNLNELEFI-KGEVWANVWQT-DCIARISHEDG 266 (346)
Q Consensus 208 --------Gs~~l~vIDp~---T~kvi~~I~V~~--~------G~pv~~lNELE~~-~G~LyaNv~~s-n~I~vID~~TG 266 (346)
|.+.|+.+|+. |.+.+..+.... . |+.....|++..+ +|.+||+.-.. +.|.+|||+-.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 46889999999 888887777632 1 2234457888877 68999977777 99999999866
Q ss_pred eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 267 VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 267 ~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
++..+..- .-. .....-+|||||+|++++|+|+.- -.+|+++.+.
T Consensus 170 ~~~~~~~~-~~~-------~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 170 TVSTFAWE-SGN-------GGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp CEEEEEEC-CCC-------SSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred EEeeeeec-CCC-------cccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence 66555421 100 112346899999999999999988 8999998864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-08 Score=88.72 Aligned_cols=206 Identities=7% Similarity=0.031 Sum_probs=135.3
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCE
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
.+.+.--.|.. ....+.|++++.++.+++ .+..|.+||+.+++.+..+.-. .......+..+++.|+ +.-.++.
T Consensus 23 ~~~~~l~~h~~--~v~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~ 97 (369)
T 3zwl_B 23 MKAIKLTGHER--PLTQVKYNKEGDLLFSCS--KDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCV-TGSADYS 97 (369)
T ss_dssp EEEEEEECCSS--CEEEEEECTTSCEEEEEE--SSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEETTTE
T ss_pred cccEEEEEeec--eEEEEEEcCCCCEEEEEe--CCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEE-EEeCCCe
Confidence 34444444633 347999999998777766 4559999999999988887643 3333322333345454 4456899
Q ss_pred EEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCC-----CeEEEEeCCCCcEEEEEEeccCCeeee---------
Q 019103 172 GFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGS-----SMLYQIDPQTLKVIRKDIVRYKGREVR--------- 236 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs-----~~l~vIDp~T~kvi~~I~V~~~G~pv~--------- 236 (346)
+.++|..+.+.+.++... ......+++|++.++++..+ +.|.++|..+.+....+..... .++.
T Consensus 98 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 98 IKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE-EPIHKIITHEGLD 176 (369)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS-SCSEEEECCTTCC
T ss_pred EEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc-ceeeeccCCcCcc
Confidence 999999999999999864 23556678999999987665 8999999877654333322111 0100
Q ss_pred eceeeEee-CCEEEEEecCCCeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 237 NLNELEFI-KGEVWANVWQTDCIARISHED-GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 237 ~lNELE~~-~G~LyaNv~~sn~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
.+..+.+. +|..++..-.++.|.+.|..+ ++.+..+... .....+++|+|+++.|++++. .+.|
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~-d~~i 242 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-------------EKSISDMQFSPDLTYFITSSR-DTNS 242 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-------------SSCEEEEEECTTSSEEEEEET-TSEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-------------CCceeEEEECCCCCEEEEecC-CceE
Confidence 12234443 454444444578999999999 7888777541 124678999999887766643 4444
Q ss_pred EEEE
Q 019103 315 YEIN 318 (346)
Q Consensus 315 ~ev~ 318 (346)
+-.+
T Consensus 243 ~v~d 246 (369)
T 3zwl_B 243 FLVD 246 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-08 Score=96.91 Aligned_cols=207 Identities=10% Similarity=-0.007 Sum_probs=140.3
Q ss_pred cceeEEEecCCEE-EEEcCCCCCCeEEEEECC--CCcEEEEe---ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019103 106 FTQGLLYAENDTL-FESTGLYGRSSVRRVALE--TGKVEAIN---QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 106 FTqGL~~~~d~~L-yeStGlyg~s~V~~iDl~--Tgkv~~~~---~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
....+.+++|+.. +.+++ .+..|++||+. +++.+..+ ..+.......+.++++.|+.++. ++.++++|..+
T Consensus 104 ~v~~~~~s~d~~~l~~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~ 180 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACAD--SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDINS 180 (450)
T ss_dssp CEEEEEECTTSSEEEEEEG--GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEETTS
T ss_pred ceEEEEEcCCCCEEEEEEC--CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecCC
Confidence 3578999999964 57766 45699999999 88877766 34455444444445667776654 78999999988
Q ss_pred CcEEE----EEec-C-CCceeEEeeC---CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE
Q 019103 180 LNKLE----EFTH-Q-MKDGWGLATD---GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA 250 (346)
Q Consensus 180 l~~i~----ti~~-~-~peGwGLt~D---g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya 250 (346)
.+... ++.. . .-....+++| ++.|+.++.++.|.++|..+.+.+.++..+.. .++ +.+.+.+|..++
T Consensus 181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~-~~v---~~~~~sd~~~l~ 256 (450)
T 2vdu_B 181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK-HFV---SSICCGKDYLLL 256 (450)
T ss_dssp CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS-SCE---EEEEECSTTEEE
T ss_pred cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC-Cce---EEEEECCCCEEE
Confidence 77654 4432 1 2244567899 88888887788999999999888766443321 222 335555666555
Q ss_pred EecCCCeEEEEeCCCCeEEEEEECCchhhhhh------------hccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 251 NVWQTDCIARISHEDGVVLGWVLLPNLRERLV------------AAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 251 Nv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~------------~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
..-.++.|.+.|..+|+++..+.+......+. +..........+|++.|+++.|++++...+.|+-.+
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 55578899999999999999997632111000 000012235689999999999999986666666555
Q ss_pred E
Q 019103 319 L 319 (346)
Q Consensus 319 l 319 (346)
+
T Consensus 337 ~ 337 (450)
T 2vdu_B 337 M 337 (450)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-09 Score=105.41 Aligned_cols=149 Identities=10% Similarity=0.040 Sum_probs=108.5
Q ss_pred EEEEEEe----CCEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCC-----CeEEEEeCCCCc
Q 019103 152 GEGLTLL----GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGS-----SMLYQIDPQTLK 221 (346)
Q Consensus 152 geGit~~----g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs-----~~l~vIDp~T~k 221 (346)
+.|++++ ++.||+++.. +.+.+||+++.++...+... .|.|.++++||+ ||++|.. ..++.+++....
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 4678887 3899999987 99999999888776554432 578888999999 9999842 246667654322
Q ss_pred E-EEEEEeccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEE-ECCchhhhhhhccCCCCceeeEEEE
Q 019103 222 V-IRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWV-LLPNLRERLVAAGYNGIDVLNGIAW 297 (346)
Q Consensus 222 v-i~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I-~l~~l~~~~~~~~~~~~~vlNGIA~ 297 (346)
. ...+. . ...++.+.+. +|+||++.+..+.|.+||+++|++...+ .... ...++|||+
T Consensus 219 ~~~~~~~--~----~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~------------~~~~~~ia~ 280 (433)
T 4hw6_A 219 TERLSLC--N----ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT------------KGSNFHIVW 280 (433)
T ss_dssp CCEEEEE--E----CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC------------CSSCEEEEE
T ss_pred ecccccc--c----cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC------------CCCcccEEE
Confidence 1 12222 1 1233445554 6899999999999999999999984443 2211 124578999
Q ss_pred eCCCCEEEEecCCCCcEEEEEEe
Q 019103 298 DSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 298 d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+|++++|||+...-..|+++.+.
T Consensus 281 dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 281 HPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CTTSSEEEEEETTTTEEEEEEBC
T ss_pred eCCCCEEEEEeCCCCEEEEEeCC
Confidence 99999999999999999999865
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-08 Score=100.75 Aligned_cols=197 Identities=9% Similarity=0.056 Sum_probs=132.5
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe----eEEEEEEeCCEEEEEEee-----CCEEEEEEC
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY----FGEGLTLLGEKLFQVTWL-----QKTGFIYDQ 177 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~----FgeGit~~g~~LY~ltw~-----~~~v~V~D~ 177 (346)
..|+++. ++++|+++. +..|..+|++||+++-+..++... ....-.+.++++|+.+.. ++.++.+|+
T Consensus 108 ~~~~~~~-~~~v~v~~~---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~ 183 (571)
T 2ad6_A 108 DRGLAYG-AGQIVKKQA---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDL 183 (571)
T ss_dssp CCCCEEE-TTEEEEECT---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEET
T ss_pred ccccEEE-CCEEEEEeC---CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEEC
Confidence 3577876 689999975 459999999999999888775421 111123468999998764 789999999
Q ss_pred CCCcEEEEEecCCCc----------------------------------------eeEEeeCCCEEEEECCC--------
Q 019103 178 NNLNKLEEFTHQMKD----------------------------------------GWGLATDGKVLFGSDGS-------- 209 (346)
Q Consensus 178 ~tl~~i~ti~~~~pe----------------------------------------GwGLt~Dg~~LyvSdGs-------- 209 (346)
+|++++-+++...+. ...++++.+.+|+..+.
T Consensus 184 ~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~ 263 (571)
T 2ad6_A 184 KTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETM 263 (571)
T ss_dssp TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred CCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCc
Confidence 999999998864211 12355567899997642
Q ss_pred --------CeEEEEeCCCCcEEEEEEeccC--------CeeeeeceeeEe-eCCE---EEEEecCCCeEEEEeCCCCeEE
Q 019103 210 --------SMLYQIDPQTLKVIRKDIVRYK--------GREVRNLNELEF-IKGE---VWANVWQTDCIARISHEDGVVL 269 (346)
Q Consensus 210 --------~~l~vIDp~T~kvi~~I~V~~~--------G~pv~~lNELE~-~~G~---LyaNv~~sn~I~vID~~TG~Vv 269 (346)
+.|+.+|++|++++=+.+...+ ..|+- .+. .+|+ +++..-....+.+||++||+++
T Consensus 264 ~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l----~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 264 RPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL----TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp SCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE----EEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE----EecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence 3699999999999988876421 12221 111 3673 4443334678999999999999
Q ss_pred EEEECCc-h-----------hhhh-hh-------------ccCCCCceeeEEEEeCCCCEEEEecCCC
Q 019103 270 GWVLLPN-L-----------RERL-VA-------------AGYNGIDVLNGIAWDSNRNRIFVTGKLW 311 (346)
Q Consensus 270 ~~I~l~~-l-----------~~~~-~~-------------~~~~~~~vlNGIA~d~~~~~LfVTGK~W 311 (346)
..+.+.. . ++.. .+ .+...+.-..++||||+++++||....+
T Consensus 340 w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~ 407 (571)
T 2ad6_A 340 VAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHI 407 (571)
T ss_dssp EEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECE
T ss_pred eeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhc
Confidence 9987743 1 0000 00 0000111236799999999999986543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-08 Score=91.62 Aligned_cols=203 Identities=9% Similarity=0.013 Sum_probs=139.9
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCee--------------EEEEEEeC
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYF--------------GEGLTLLG 159 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~F--------------geGit~~g 159 (346)
+.+..+.. .......+.+++++.++.+++ .+..|.+||+.+++.+..+......- ...+...+
T Consensus 140 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (425)
T 1r5m_A 140 ALLNVLNF-HRAPIVSVKWNKDGTHIISMD--VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216 (425)
T ss_dssp CEEEEECC-CCSCEEEEEECTTSSEEEEEE--TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE
T ss_pred CeeeeccC-CCccEEEEEECCCCCEEEEEe--cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC
Confidence 34455542 233347999999987666666 45699999999999988886654320 12233333
Q ss_pred CEEEEEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeee
Q 019103 160 EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~ 237 (346)
+..+++.-.++.+.++|..+.+.+.++... .-....+++|++.|+++..++.|.++|..+.+.+..+.-.. .++
T Consensus 217 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i-- 292 (425)
T 1r5m_A 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS--QSI-- 292 (425)
T ss_dssp TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCS--SCE--
T ss_pred CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCC--ccE--
Confidence 334555566799999999999988888642 12445678899999888888899999999988776664322 222
Q ss_pred ceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 238 LNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 238 lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
..+.+. +| .++..-.++.|.+.|..+++.+..+... ......++|+|+++.|++++. .+.|+-
T Consensus 293 -~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~~-dg~i~i 356 (425)
T 1r5m_A 293 -VSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-------------GVPIFAGRISQDGQKYAVAFM-DGQVNV 356 (425)
T ss_dssp -EEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT-------------TCCEEEEEECTTSSEEEEEET-TSCEEE
T ss_pred -EEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC-------------CccEEEEEEcCCCCEEEEEEC-CCeEEE
Confidence 345565 56 5555556889999999999998888541 124678999999987777654 455554
Q ss_pred EEE
Q 019103 317 INL 319 (346)
Q Consensus 317 v~l 319 (346)
.++
T Consensus 357 ~~~ 359 (425)
T 1r5m_A 357 YDL 359 (425)
T ss_dssp EEC
T ss_pred EEC
Confidence 444
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-07 Score=85.31 Aligned_cols=195 Identities=12% Similarity=0.038 Sum_probs=136.3
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEE
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGF 173 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~ 173 (346)
.+.++.. .......+.+++++.++.+.+ .+..|++||+.+++.+..+.....+ -..++... +.++++.-.++.+.
T Consensus 99 ~~~~~~~-~~~~v~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 99 CLKTLKG-HSNYVFCCNFNPQSNLIVSGS--FDESVRIWDVKTGKCLKTLPAHSDP-VSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp EEEEEEC-CSSCEEEEEECSSSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEEcC-CCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCEEEEEecCCCCc-EEEEEEcCCCCEEEEEeCCCcEE
Confidence 4455542 234457899999888777777 4569999999999988877654332 22344432 33444555678999
Q ss_pred EEECCCCcEEEEEecCC---CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeece-eeEeeCCEEE
Q 019103 174 IYDQNNLNKLEEFTHQM---KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN-ELEFIKGEVW 249 (346)
Q Consensus 174 V~D~~tl~~i~ti~~~~---peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lN-ELE~~~G~Ly 249 (346)
++|..+.+.+.++.... -....+++|++.|+++..++.|.++|..+.+.+..+.-... ....+. .....++..+
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN--EKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC--SSSCCCEEEECSSSCEE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC--ceEEEEEEEEeCCCcEE
Confidence 99999999988875431 12345788999999988889999999999988776654322 111111 1222467777
Q ss_pred EEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 250 ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 250 aNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
+..-.++.|.+.|.++++++..+.- -.+....+|++|+++.+..++
T Consensus 253 ~sg~~dg~i~vwd~~~~~~~~~~~~-------------h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTKEIVQKLQG-------------HTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp EECCTTSCEEEEETTTCCEEEEECC-------------CSSCEEEEEECSSSSEEEEEE
T ss_pred EEECCCCEEEEEECCCchhhhhhhc-------------cCCcEEEEeecCcCCceEEEE
Confidence 7776788999999999999888732 123567899999999888775
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.03 E-value=9.8e-08 Score=89.81 Aligned_cols=181 Identities=11% Similarity=0.080 Sum_probs=126.4
Q ss_pred EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe----------eEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 111 LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY----------FGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 111 ~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~----------FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
.+. ++.+|+++. ...|..+|+++|+++-+...+... ......+.++.+|+.+. ++.++.+|++++
T Consensus 185 ~~~-~~~v~~g~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~g~l~~~d~~tG 259 (376)
T 3q7m_A 185 TTA-FGAAVVGGD---NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-NGNLTALDLRSG 259 (376)
T ss_dssp EEE-TTEEEECCT---TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-TSCEEEEETTTC
T ss_pred EEE-CCEEEEEcC---CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-CcEEEEEECCCC
Confidence 444 578888754 358999999999998877654211 01122346899999874 678999999999
Q ss_pred cEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEE
Q 019103 181 NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIAR 260 (346)
Q Consensus 181 ~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~v 260 (346)
+++.+.+.+ ...++..+++.+|+.+.++.|+.+|++|++++-+...... .. .......+++||+... ...|.+
T Consensus 260 ~~~w~~~~~--~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~---~~~~~~~~~~l~v~~~-~g~l~~ 332 (376)
T 3q7m_A 260 QIMWKRELG--SVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RL---LTSPVLYNGNLVVGDS-EGYLHW 332 (376)
T ss_dssp CEEEEECCC--CEEEEEEETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SC---CCCCEEETTEEEEECT-TSEEEE
T ss_pred cEEeeccCC--CCCCceEECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-Cc---ccCCEEECCEEEEEeC-CCeEEE
Confidence 999888764 3345667799999988888999999999998766552111 11 1123356899998864 678999
Q ss_pred EeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 261 ISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 261 ID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
+|++||+++....+.+- .+....+.. +++|||.... +.||.++
T Consensus 333 ~d~~tG~~~~~~~~~~~------------~~~~~~~~~--~~~l~v~~~~-G~l~~~~ 375 (376)
T 3q7m_A 333 INVEDGRFVAQQKVDSS------------GFQTEPVAA--DGKLLIQAKD-GTVYSIT 375 (376)
T ss_dssp EETTTCCEEEEEECCTT------------CBCSCCEEE--TTEEEEEBTT-SCEEEEE
T ss_pred EECCCCcEEEEEecCCC------------cceeCCEEE--CCEEEEEeCC-CEEEEEe
Confidence 99999999998876210 011122232 5688887654 6777664
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.9e-09 Score=97.45 Aligned_cols=194 Identities=13% Similarity=0.087 Sum_probs=136.0
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
.....+.|++|++++++.+ .+..|++||..+++.+..+.... ......+...++.++++.-.++.+.++|..+.+.+
T Consensus 140 ~~V~~v~~spdg~~l~sgs--~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~ 217 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGG--KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA 217 (357)
T ss_dssp SCEEEEEECSSSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB
T ss_pred CCEEEEEECCCCCEEEEEe--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee
Confidence 3447899999998888877 45699999999999988876533 33332233345567777788999999999999888
Q ss_pred EEEecCC----CceeEEeeCCCEEE-EECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-C-CEEEEEecCCC
Q 019103 184 EEFTHQM----KDGWGLATDGKVLF-GSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K-GEVWANVWQTD 256 (346)
Q Consensus 184 ~ti~~~~----peGwGLt~Dg~~Ly-vSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~-G~LyaNv~~sn 256 (346)
..+.... .....++|+++.++ +...+..|.++|.++.+.+.++.... .+ ++.+.+. + +++.|+.-.+.
T Consensus 218 ~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~--~~---v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 218 TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS--QN---ITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS--SC---EEEEEECSSSSCCEEEEETTS
T ss_pred eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc--ee---EEEEEEcCCCCCEEEEEeCCC
Confidence 8776431 22344567766554 45668899999999999887776533 23 2346554 4 46677766788
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+|.+-|.++++++..+. + .+..++|||+|....+++||-...+|+-=.+
T Consensus 293 ~i~iwd~~~~~~~~~~~----------H----~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 293 TVAVLDADFSEVFRDLS----------H----RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp CEEEECTTSCEEEEECC----------C----SSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEEEEECCCCcEeEECC----------C----CCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 99999999999876541 1 1246899999954555667666676654443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.3e-07 Score=86.96 Aligned_cols=202 Identities=11% Similarity=0.046 Sum_probs=141.7
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEE
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFI 174 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V 174 (346)
.+..+..........+.+++++.++.+++ .+..|.+||+.+++.+..+.-.... -..++..++.+ ++...++.+.+
T Consensus 125 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l-~~~~~dg~i~i 200 (401)
T 4aez_A 125 VSALAETDESTYVASVKWSHDGSFLSVGL--GNGLVDIYDVESQTKLRTMAGHQAR-VGCLSWNRHVL-SSGSRSGAIHH 200 (401)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSSC-EEEEEEETTEE-EEEETTSEEEE
T ss_pred EeEeeecCCCCCEEEEEECCCCCEEEEEC--CCCeEEEEECcCCeEEEEecCCCCc-eEEEEECCCEE-EEEcCCCCEEE
Confidence 34444443344557999999887665655 4569999999999988887643322 23466666644 44556799999
Q ss_pred EECC-CCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEE
Q 019103 175 YDQN-NLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVW 249 (346)
Q Consensus 175 ~D~~-tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~Ly 249 (346)
+|.. ..+.+.++... .-.+..+++|++.|+++..++.|.++|..+.+.+.++.-.. .++ ..+.+. ++.++
T Consensus 201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~v---~~~~~~p~~~~ll 275 (401)
T 4aez_A 201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN--AAV---KAVAWCPWQSNLL 275 (401)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS--SCC---CEEEECTTSTTEE
T ss_pred EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc--ceE---EEEEECCCCCCEE
Confidence 9998 45666666532 22445577899999988778899999999988877664322 222 345555 34677
Q ss_pred EEec--CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe-cCCCCcEEEEEE
Q 019103 250 ANVW--QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT-GKLWPKLYEINL 319 (346)
Q Consensus 250 aNv~--~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT-GK~Wp~l~ev~l 319 (346)
+... .++.|.+.|..+++.+..++.. ...+.++|+|+++.++++ |-..+.++-.++
T Consensus 276 ~~~~gs~d~~i~i~d~~~~~~~~~~~~~--------------~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 276 ATGGGTMDKQIHFWNAATGARVNTVDAG--------------SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp EEECCTTTCEEEEEETTTCCEEEEEECS--------------SCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEeCC--------------CcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence 7654 5889999999999999888541 136889999999999988 445555555444
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-07 Score=86.96 Aligned_cols=187 Identities=11% Similarity=0.019 Sum_probs=135.6
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
...+.+++++.++.+++ .+..|++||+.+++.+..+.... ......+.++++.|. +.-.++.+.++|.++.+...+
T Consensus 83 v~~~~~~~~~~~l~s~s--~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~-~g~~dg~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSS--LDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLA-TGTHVGKVNIFGVESGKKEYS 159 (321)
T ss_dssp EEEEEECSSSSEEEEEE--TTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEE-EECTTSEEEEEETTTCSEEEE
T ss_pred EEEEEECCCCCEEEEEe--CCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEE-EEcCCCcEEEEEcCCCceeEE
Confidence 46889998888888877 45699999999999888876543 333333444555544 445679999999999999888
Q ss_pred EecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEe
Q 019103 186 FTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARIS 262 (346)
Q Consensus 186 i~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID 262 (346)
+... .-....++|||+.|.....++.|.++|.++.+.+.++.-.. .+ ++.+.+. +|.++|..-.+..|.+.|
T Consensus 160 ~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~--~~---v~~l~~spd~~~l~s~s~dg~i~iwd 234 (321)
T 3ow8_A 160 LDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA--MP---IRSLTFSPDSQLLVTASDDGYIKIYD 234 (321)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SC---CCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred ecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccC--Cc---eeEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 8753 12455678999999988778899999999999887765322 23 3346665 567777776788999999
Q ss_pred CCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 263 HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 263 ~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
..+++.+.++.-. ......++|+|+++.|+.++ ...++.
T Consensus 235 ~~~~~~~~~~~~h-------------~~~v~~~~~sp~~~~l~s~s-~D~~v~ 273 (321)
T 3ow8_A 235 VQHANLAGTLSGH-------------ASWVLNVAFCPDDTHFVSSS-SDKSVK 273 (321)
T ss_dssp TTTCCEEEEECCC-------------SSCEEEEEECTTSSEEEEEE-TTSCEE
T ss_pred CCCcceeEEEcCC-------------CCceEEEEECCCCCEEEEEe-CCCcEE
Confidence 9999988776321 12457899999988766554 444443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=97.04 Aligned_cols=189 Identities=9% Similarity=0.033 Sum_probs=127.4
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc---C--CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCc
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM---E--GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l---~--~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
...+.|++|++|..+ + .+..|++||+++++.+..... + .......+..+++.|. +.-.++.+.++|.++.+
T Consensus 85 v~~~~~s~d~~l~~~-s--~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~-sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 85 VADLTWVGERGILVA-S--DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV-SGSKDICIKVWDLAQQV 160 (344)
T ss_dssp EEEEEEETTTEEEEE-E--TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTE
T ss_pred EEEEEEeCCCeEEEE-E--CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEE-EEeCCCeEEEEECCCCc
Confidence 367899998887655 4 356999999999975443321 2 2333333333455444 44567899999999999
Q ss_pred EEEEEecC--CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCC
Q 019103 182 KLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTD 256 (346)
Q Consensus 182 ~i~ti~~~--~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn 256 (346)
.+.++.-. .-....+++|++.+++|- .+++|.++|.++.+...++.....+..+ +-+.+. +++++|.--.+.
T Consensus 161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP---TSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCE---EEEEECSSCTTEEEEEETTS
T ss_pred EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccc---eeeeecCCCCcceEEeccCC
Confidence 99998732 113345678887766654 5789999999999988877654433322 234444 567777766788
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
.|.+.|.++++.+.++.-. ....+.|+|+|++.++++||-...+|+
T Consensus 238 ~v~~wd~~~~~~~~~~~~h-------------~~~v~~v~fsp~g~~~lasgs~D~~i~ 283 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVH-------------SQCVTGLVFSPHSVPFLASLSEDCSLA 283 (344)
T ss_dssp EEEEEESCC--CCEEEECC-------------SSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred cEEEEECCCCcEEEEEcCC-------------CCCEEEEEEccCCCeEEEEEeCCCeEE
Confidence 9999999999988877431 124588999999988888876666554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-07 Score=90.59 Aligned_cols=199 Identities=11% Similarity=0.042 Sum_probs=132.3
Q ss_pred CCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 102 DPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 102 d~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
+...+...++|+|||+ |.+++|. .+..|++||+.+++.+..+..........++++|+.|.... ++.+.+++..+.
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~-~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~ 207 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSK-VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT--GSSLEVISTVTG 207 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESC-SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC--SSCEEEEETTTC
T ss_pred CcccCEEEEEEcCCCCEEEEEECC-CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc--ceeEEEEEeccC
Confidence 3456678899999996 4555552 45799999999999988887666655544555566555444 677888898888
Q ss_pred cEEEEEecC-C---CceeEEeeCCCEEEEE--CCCC--eEEEEeCCCCcEE--EEEEeccCCeeeeeceeeEee-CCEEE
Q 019103 181 NKLEEFTHQ-M---KDGWGLATDGKVLFGS--DGSS--MLYQIDPQTLKVI--RKDIVRYKGREVRNLNELEFI-KGEVW 249 (346)
Q Consensus 181 ~~i~ti~~~-~---peGwGLt~Dg~~LyvS--dGs~--~l~vIDp~T~kvi--~~I~V~~~G~pv~~lNELE~~-~G~Ly 249 (346)
+.+.+.... . -....++|||+.++.+ |++. .+..+|..+.+.. ....+..+..++ +-+.+- ||++.
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V---~~~~~Spdg~~l 284 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI---TSMDVDMKGELA 284 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE---EEEEECTTSCEE
T ss_pred cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe---EeEEECCCCCce
Confidence 877654432 1 1234578999998874 3332 5777776655432 222332222232 345554 67777
Q ss_pred EEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 250 ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 250 aNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
|.--.++.|.+.|.++++++.++.- . + ....+++||+|+++.| +||-...+|.-.+|
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~-----g---H----~~~V~~v~fSpdg~~l-aS~S~D~tvrvw~i 341 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQ-----A---H----SFAITEVTISPDSTYV-ASVSAANTIHIIKL 341 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETT-----S---S----SSCEEEEEECTTSCEE-EEEETTSEEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEecC-----c---c----cCCEEEEEECCCCCEE-EEEeCCCeEEEEEc
Confidence 7766788999999999999888721 0 1 1246889999998755 66667777655554
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.98 E-value=9.1e-08 Score=88.88 Aligned_cols=208 Identities=10% Similarity=-0.054 Sum_probs=134.4
Q ss_pred CcceeEEEe----cCCEE-EEEcCCCCCCeEEEEECCC------CcEEE-----Eec--------cCCCeeEEEEEEeCC
Q 019103 105 AFTQGLLYA----ENDTL-FESTGLYGRSSVRRVALET------GKVEA-----INQ--------MEGSYFGEGLTLLGE 160 (346)
Q Consensus 105 ~FTqGL~~~----~d~~L-yeStGlyg~s~V~~iDl~T------gkv~~-----~~~--------l~~~~FgeGit~~g~ 160 (346)
.....+.++ +++.. +.+++ .+..|.+||+.+ ++.+. .+. -.... ..++...+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~ 197 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATD--VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA--TSVDISER 197 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEE--TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC--CEEEECTT
T ss_pred CcEEEEEEeeccCCCCceEEEEEe--CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCc--eEEEECCC
Confidence 445799999 88876 76666 456999999998 65443 332 12222 33455432
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEec-------C-CCceeEEeeCCCEEEEECCC---CeEEEEeCCCCcEEEEEEec
Q 019103 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTH-------Q-MKDGWGLATDGKVLFGSDGS---SMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~-------~-~peGwGLt~Dg~~LyvSdGs---~~l~vIDp~T~kvi~~I~V~ 229 (346)
.++++.-.++.+.++|..+.+.+.++.. . ......+++|++.|+++..+ +.|.++|..+.+.+.++...
T Consensus 198 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~ 277 (397)
T 1sq9_A 198 GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 277 (397)
T ss_dssp SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred ceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccC
Confidence 2555566789999999999999999875 3 12445577899999887666 89999999999988877651
Q ss_pred c-----------CCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhh---hhccCC-----CC
Q 019103 230 Y-----------KGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERL---VAAGYN-----GI 289 (346)
Q Consensus 230 ~-----------~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~---~~~~~~-----~~ 289 (346)
. +.. .++.+.+. +|..++....++.|.+.|..+++.+..+....-.... ...+.. -.
T Consensus 278 ~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 354 (397)
T 1sq9_A 278 THSSQASLGEFAHSS---WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 354 (397)
T ss_dssp --------CCBSBSS---CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred cccccccccccccCC---cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccC
Confidence 1 111 23345565 5655555556889999999999999999742100000 000000 03
Q ss_pred ceeeEEEEeCCCC---------EEEEecCCCCcEEEEEE
Q 019103 290 DVLNGIAWDSNRN---------RIFVTGKLWPKLYEINL 319 (346)
Q Consensus 290 ~vlNGIA~d~~~~---------~LfVTGK~Wp~l~ev~l 319 (346)
...++++|+|+++ .+++||-..+.|.--++
T Consensus 355 ~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 355 PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred CceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 4678999999984 56666666666654443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-08 Score=95.47 Aligned_cols=191 Identities=14% Similarity=0.071 Sum_probs=124.4
Q ss_pred ceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--CCEEEEEECCCCcEE
Q 019103 107 TQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--QKTGFIYDQNNLNKL 183 (346)
Q Consensus 107 TqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--~~~v~V~D~~tl~~i 183 (346)
...+.++|||+ |+.++...+...|.+||+++|+.......+.......++++|++|+.+... ...++++|.++.+..
T Consensus 181 v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~ 260 (415)
T 2hqs_A 181 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR 260 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE
Confidence 46899999995 444433234579999999999986554455555555556677878766544 356999999988763
Q ss_pred EEEe-cC-CCceeEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecC--
Q 019103 184 EEFT-HQ-MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ-- 254 (346)
Q Consensus 184 ~ti~-~~-~peGwGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~-- 254 (346)
++. .. ......++|||++|+. ++ |..+|+++|..+.+.. + +...+..+ ..+.+. || +|+.....
T Consensus 261 -~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~--l~~~~~~~---~~~~~spdG~~l~~~~~~~g 333 (415)
T 2hqs_A 261 -QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-R--ITWEGSQN---QDADVSSDGKFMVMVSSNGG 333 (415)
T ss_dssp -ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-E--CCCSSSEE---EEEEECTTSSEEEEEEECSS
T ss_pred -eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-E--EecCCCcc---cCeEECCCCCEEEEEECcCC
Confidence 333 22 1234457899998765 54 3559999999988743 2 22222222 234443 44 56655443
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC--cEEEEEE
Q 019103 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP--KLYEINL 319 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp--~l~ev~l 319 (346)
...|.++|++++++. .+. . ......++|+|+++.|+.++..-. .||.+.+
T Consensus 334 ~~~i~~~d~~~~~~~-~l~--~------------~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 334 QQHIAKQDLATGGVQ-VLS--S------------TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp CEEEEEEETTTCCEE-ECC--C------------SSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred ceEEEEEECCCCCEE-Eec--C------------CCCcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 358999999999873 221 1 013577999999999888775544 6777765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-07 Score=89.39 Aligned_cols=198 Identities=12% Similarity=-0.025 Sum_probs=134.7
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
.-..+++++.++.+.+ .+..|++||+.+++...... -........+..+++.|+ +.-.++.+.++|..+.+.+.++
T Consensus 101 ~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 101 AVDTAKLQMRRFILGT--TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp EEEEECSSSCEEEEEE--TTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCCCCEEE
T ss_pred EEEEEecCCCEEEEEE--CCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEE-EEeCCCeEEEEeCCCCcCceEE
Confidence 3445677887776666 45699999999998877653 233333333333445444 4456799999999999999988
Q ss_pred ecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC-Ceeee------------------eceeeEee-
Q 019103 187 THQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK-GREVR------------------NLNELEFI- 244 (346)
Q Consensus 187 ~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~-G~pv~------------------~lNELE~~- 244 (346)
... .-....+++|++.|+.+..++.|.++|.++.+.+.++..... ..++. .++.+.+.
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 732 224456788999999887788999999999998888765321 11111 11112222
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 245 KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+|...+..-.++.|.+.|..+++.+..+.. . .....+.++|+|+++.+++||-..+.|+--.+.
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPS-K-----------FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECC-T-----------TSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEccc-c-----------cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence 566666665688899999999998877733 1 123568899999999666666666777666553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-08 Score=96.57 Aligned_cols=178 Identities=14% Similarity=0.107 Sum_probs=119.7
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe------CC---EEEEEEee--CCEEEEE--ECCCCcEE
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL------GE---KLFQVTWL--QKTGFIY--DQNNLNKL 183 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~------g~---~LY~ltw~--~~~v~V~--D~~tl~~i 183 (346)
.++++|- +...|.+||+ +|++++.++.+ ++ .++.+. |+ .+|+++-. ++++.+| |+++.+ +
T Consensus 41 s~ii~t~--k~~gL~Vydl-~G~~l~~~~~g-~~--nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l 113 (355)
T 3amr_A 41 SKLITTN--KKSGLVVYSL-DGKMLHSYNTG-KL--NNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L 113 (355)
T ss_dssp CEEEEEE--TTTEEEEEET-TSCEEEEECCS-CE--EEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred cEEEEEc--CCCCEEEEcC-CCcEEEEccCC-Cc--ccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence 5788876 4569999999 99999998763 32 333432 22 46777777 7999888 655543 4
Q ss_pred EEE-----e--cC--CCceeEE--eeCCC--EEEEECCCCeEEEEeC-------CCCcEEEEEEeccCCeeeeeceeeEe
Q 019103 184 EEF-----T--HQ--MKDGWGL--ATDGK--VLFGSDGSSMLYQIDP-------QTLKVIRKDIVRYKGREVRNLNELEF 243 (346)
Q Consensus 184 ~ti-----~--~~--~peGwGL--t~Dg~--~LyvSdGs~~l~vIDp-------~T~kvi~~I~V~~~G~pv~~lNELE~ 243 (346)
+.+ + .+ .|+|..+ +++++ ++|+++.+..+.+++. .+.++++++.++. ++-. +-+
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~Eg----cvv 187 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEG----MAA 187 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEE----EEE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC--Ccce----EEE
Confidence 444 4 22 3566666 44433 6899997777777554 3457788888864 2311 334
Q ss_pred e--CCEEEEEecCCCeEEEEeCC-----CCeEEEEEECCchhhhhhhccCCCCceeeEEEEe--CCCC-EEEEecCCCCc
Q 019103 244 I--KGEVWANVWQTDCIARISHE-----DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWD--SNRN-RIFVTGKLWPK 313 (346)
Q Consensus 244 ~--~G~LyaNv~~sn~I~vID~~-----TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d--~~~~-~LfVTGK~Wp~ 313 (346)
+ .|+||++.+.. -|.+||.+ +++++..+....|.. -+.|||+. ++++ .|||+.+.-++
T Consensus 188 Dd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g~l~a-----------DvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 188 DDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTR-----------DIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp ETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSSSBCS-----------CEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred cCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecCCcccc-----------CcceEEEEecCCCCEEEEEEcCCCCE
Confidence 3 48999999974 49999955 588888875544431 36899995 4455 79999988887
Q ss_pred EEEEEE
Q 019103 314 LYEINL 319 (346)
Q Consensus 314 l~ev~l 319 (346)
+.-.+.
T Consensus 256 ~~Vydr 261 (355)
T 3amr_A 256 YAIYDR 261 (355)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 776665
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9.8e-08 Score=89.81 Aligned_cols=178 Identities=8% Similarity=0.004 Sum_probs=124.0
Q ss_pred eeeEEEEEEecCCC----CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC---------CCeeEEEEEE
Q 019103 91 YTIQVVNEFPHDPR----AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME---------GSYFGEGLTL 157 (346)
Q Consensus 91 ~t~~Vv~t~phd~~----~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~---------~~~FgeGit~ 157 (346)
.+.+++=+++.+.. .+.....+. ++++|+++. +..|..+|++||+++-+..++ ...+..+.+.
T Consensus 26 ~~~~~~W~~~~~~~~~~~~~~~~p~v~-~~~v~~~~~---~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 101 (376)
T 3q7m_A 26 FTPTTAWSTSVGSGIGNFYSNLHPALA-DNVVYAADR---AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV 101 (376)
T ss_dssp SCCEEEEEECCTTTTTTSCCCCCCEEE-TTEEEEECT---TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE
T ss_pred CcceEEeEEecCCCccccceeeccEEE-CCEEEEEcC---CCeEEEEEccCCceeeeecCccccccccccCcccccCceE
Confidence 34566666655321 111234554 689999875 349999999999998887774 2345566788
Q ss_pred eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeee
Q 019103 158 LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (346)
Q Consensus 158 ~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~ 237 (346)
.++++|+.+. ++.++.+|++|++++-+++.+.........+++.+|+...++.|+.+|++|++++-+............
T Consensus 102 ~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~ 180 (376)
T 3q7m_A 102 SGGHVYIGSE-KAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG 180 (376)
T ss_dssp ETTEEEEEET-TSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred eCCEEEEEcC-CCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence 8999999885 588999999999999988864211111223467899987788999999999999887776432110000
Q ss_pred ceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019103 238 LNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 238 lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
.......+|.||+... ...|..+|++||+++-....
T Consensus 181 ~~~~~~~~~~v~~g~~-~g~l~~~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 181 ESAPTTAFGAAVVGGD-NGRVSAVLMEQGQMIWQQRI 216 (376)
T ss_dssp CCCCEEETTEEEECCT-TTEEEEEETTTCCEEEEEEC
T ss_pred CCCcEEECCEEEEEcC-CCEEEEEECCCCcEEEEEec
Confidence 1123355889998653 67899999999999877765
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=5.4e-08 Score=91.25 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=108.1
Q ss_pred CeeEEEEEEeC--CEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEE
Q 019103 149 SYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK 225 (346)
Q Consensus 149 ~~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~ 225 (346)
..++||.+.+. +.+|.++...+.++++|+++.+. ..+..+ .+.+..+++||+.++.+ .+.|+++|+++.++..-
T Consensus 48 ~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 48 MLLGEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLH 124 (326)
T ss_dssp CSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEE
T ss_pred CCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEE
Confidence 35789999975 78999999999999999988754 344443 34566677887755544 34599999999886533
Q ss_pred EEeccCCeeeeeceeeEee-CCEEEEEecC------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEe
Q 019103 226 DIVRYKGREVRNLNELEFI-KGEVWANVWQ------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWD 298 (346)
Q Consensus 226 I~V~~~G~pv~~lNELE~~-~G~LyaNv~~------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d 298 (346)
... ..+.+...+|.+.+. +|++|+.... ...|.++| +|++..... . ...+|||+++
T Consensus 125 ~~~-~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~------------~~~~~~i~~s 187 (326)
T 2ghs_A 125 AEL-ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--D------------ISIPNSICFS 187 (326)
T ss_dssp ECS-STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--E------------ESSEEEEEEC
T ss_pred eeC-CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--C------------CcccCCeEEc
Confidence 222 122333456777666 6889987653 35799999 687654321 1 1257999999
Q ss_pred CCCCEEEEecCCCCcEEEEEEe
Q 019103 299 SNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 299 ~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
|+++.+|+++..-..|+.+.+.
T Consensus 188 ~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 188 PDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp TTSCEEEEEETTTCEEEEEEBC
T ss_pred CCCCEEEEEECCCCEEEEEEcc
Confidence 9999999998877889888764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=5e-07 Score=86.55 Aligned_cols=185 Identities=14% Similarity=0.022 Sum_probs=126.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
..+.+ ++..+.+++ .+..|++||+.+++.+..+...... ...+..+++.++.. -.++.+.++|..+.+.+.++.
T Consensus 243 ~~~~~--~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~ 316 (445)
T 2ovr_B 243 RCVQY--DGRRVVSGA--YDFMVKVWDPETETCLHTLQGHTNR-VYSLQFDGIHVVSG-SLDTSIRVWDVETGNCIHTLT 316 (445)
T ss_dssp EEEEE--CSSCEEEEE--TTSCEEEEEGGGTEEEEEECCCSSC-EEEEEECSSEEEEE-ETTSCEEEEETTTCCEEEEEC
T ss_pred EEEEE--CCCEEEEEc--CCCEEEEEECCCCcEeEEecCCCCc-eEEEEECCCEEEEE-eCCCeEEEEECCCCCEEEEEc
Confidence 45666 344444444 3458888888888877776533222 34456656655544 457899999999999999987
Q ss_pred cCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc-CCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCC
Q 019103 188 HQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKGEVWANVWQTDCIARISHEDG 266 (346)
Q Consensus 188 ~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~-~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG 266 (346)
.....-..++++++.|++...++.|.++|..+.+.+.++.... +..+ ++.+.+.+..|+ ..-.++.|.+.|..+|
T Consensus 317 ~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~l~-s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 317 GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA---VTCLQFNKNFVI-TSSDDGTVKLWDLKTG 392 (445)
T ss_dssp CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC---EEEEEECSSEEE-EEETTSEEEEEETTTC
T ss_pred CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC---EEEEEECCCEEE-EEeCCCeEEEEECCCC
Confidence 5434555688889988887778899999999999888776532 2222 234656444444 4446889999999999
Q ss_pred eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 267 VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 267 ~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+.+..+...... ......++++|+|++..+.+.+.+
T Consensus 393 ~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~la~~~~d 428 (445)
T 2ovr_B 393 EFIRNLVTLESG--------GSGGVVWRIRASNTKLVCAVGSRN 428 (445)
T ss_dssp CEEEEEEECTTG--------GGTCEEEEEEECSSEEEEEEECSS
T ss_pred ceeeeeeccccC--------CCCceEEEEEecCCEEEEEEcccC
Confidence 999888431111 113467899999987666655544
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-07 Score=84.92 Aligned_cols=203 Identities=8% Similarity=-0.045 Sum_probs=130.7
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc---CCCeeEEEEEEeCCEEEEEEeeCC
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM---EGSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l---~~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
+.+.+++.. ......+.+++++.++.+++ .+..|++||+.+++......+ ........+..+++.|+... .++
T Consensus 43 ~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~ 118 (372)
T 1k8k_C 43 VQVHELKEH-NGQVTGVDWAPDSNRIVTCG--TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-GSR 118 (372)
T ss_dssp EEEEEEECC-SSCEEEEEEETTTTEEEEEE--TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TTS
T ss_pred EeeeeecCC-CCcccEEEEeCCCCEEEEEc--CCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe-CCC
Confidence 366666532 23347999999987777766 456999999999987666543 22333322333445555544 578
Q ss_pred EEEEEECCCCcE---EEEEecC---CCceeEEeeCCCEEEEECCCCeEEEEeCC------------------CCcEEEEE
Q 019103 171 TGFIYDQNNLNK---LEEFTHQ---MKDGWGLATDGKVLFGSDGSSMLYQIDPQ------------------TLKVIRKD 226 (346)
Q Consensus 171 ~v~V~D~~tl~~---i~ti~~~---~peGwGLt~Dg~~LyvSdGs~~l~vIDp~------------------T~kvi~~I 226 (346)
.+.++|.++.+. ...+..+ .-....+++|++.|+++..++.|.++|.. +.+.+.++
T Consensus 119 ~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 119 VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 899988887663 3444322 12445577899999888778899999953 55666555
Q ss_pred EeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019103 227 IVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 227 ~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
.... .+ ++.+.+. +|..++....++.|.+.|..+++.+..+... ....+.++|+|+++.+.
T Consensus 199 ~~~~--~~---v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~ 260 (372)
T 1k8k_C 199 SSSC--GW---VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-------------TLPLLAVTFITESSLVA 260 (372)
T ss_dssp CCCS--SC---EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-------------SCCEEEEEEEETTEEEE
T ss_pred CCCC--Ce---EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-------------CCCeEEEEEecCCCEEE
Confidence 4221 22 2345554 5544444456889999999999999888541 12468899999876544
Q ss_pred EecCCCCcEEEEEEe
Q 019103 306 VTGKLWPKLYEINLR 320 (346)
Q Consensus 306 VTGK~Wp~l~ev~l~ 320 (346)
+| ..+.++-.++.
T Consensus 261 -~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 261 -AG-HDCFPVLFTYD 273 (372)
T ss_dssp -EE-TTSSCEEEEEE
T ss_pred -EE-eCCeEEEEEcc
Confidence 55 45555444443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-07 Score=82.79 Aligned_cols=196 Identities=8% Similarity=0.061 Sum_probs=126.2
Q ss_pred ceeEEEecCC-EEEEEcCCC--CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC----CEEEEEEeeCCEEEEEECCC
Q 019103 107 TQGLLYAEND-TLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG----EKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 107 TqGL~~~~d~-~LyeStGly--g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g----~~LY~ltw~~~~v~V~D~~t 179 (346)
...+.|+|++ .++.+++ . ++..|++||+.+++.......+...--..++... +.++++.-.++.+.++|..+
T Consensus 21 v~~~~~~p~~~~l~~~~s-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 99 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGN-FARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA 99 (357)
T ss_dssp EEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS
T ss_pred eEEEEEcCCCceEEEecC-ccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC
Confidence 3699999988 4554443 3 3679999999999876655443211123344433 25555556789999999998
Q ss_pred Cc-EEEEEecCCCceeEE--------eeCCCEEEEECCCCeEEEEeCCCCc-EEEEEEeccCCeeeeeceeeEe-----e
Q 019103 180 LN-KLEEFTHQMKDGWGL--------ATDGKVLFGSDGSSMLYQIDPQTLK-VIRKDIVRYKGREVRNLNELEF-----I 244 (346)
Q Consensus 180 l~-~i~ti~~~~peGwGL--------t~Dg~~LyvSdGs~~l~vIDp~T~k-vi~~I~V~~~G~pv~~lNELE~-----~ 244 (346)
.+ .+.++......-..+ ++|++.|+.+..+..|.++|..+.+ .+..+..... ..-..++.+.+ .
T Consensus 100 ~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 178 (357)
T 3i2n_A 100 PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG-ENKRDCWTVAFGNAYNQ 178 (357)
T ss_dssp CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT-SCCCCEEEEEEECCCC-
T ss_pred CCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC-CCCCceEEEEEEeccCC
Confidence 88 777776321222233 6789999888888899999999877 5555544321 11112233442 3
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeC---CCCEEEEecCCCCcEEEEEE
Q 019103 245 KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDS---NRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~---~~~~LfVTGK~Wp~l~ev~l 319 (346)
++..++....+..|.+.|..+++.+..... ....+.++|+| +++.|++++ ..+.++-..+
T Consensus 179 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~ 241 (357)
T 3i2n_A 179 EERVVCAGYDNGDIKLFDLRNMALRWETNI--------------KNGVCSLEFDRKDISMNKLVATS-LEGKFHVFDM 241 (357)
T ss_dssp CCCEEEEEETTSEEEEEETTTTEEEEEEEC--------------SSCEEEEEESCSSSSCCEEEEEE-STTEEEEEEE
T ss_pred CCCEEEEEccCCeEEEEECccCceeeecCC--------------CCceEEEEcCCCCCCCCEEEEEC-CCCeEEEEeC
Confidence 566666555678999999999998655432 12468899999 777766654 4455555444
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-07 Score=86.80 Aligned_cols=206 Identities=9% Similarity=0.007 Sum_probs=131.5
Q ss_pred eEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEEC----CCCc------EEEEecc--CC---------Ce
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVAL----ETGK------VEAINQM--EG---------SY 150 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl----~Tgk------v~~~~~l--~~---------~~ 150 (346)
.++++...|.... ..+.|+|++. ++.+.+ .+..|++||+ .+++ ....+.. .. ..
T Consensus 36 ~~~~~~~~~~~~v--~~~~~s~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (425)
T 1r5m_A 36 VKILKEIVKLDNI--VSSTWNPLDESILAYGE--KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQV 111 (425)
T ss_dssp CEECEEEEECSCC--SEEEECSSCTTEEEEEE--TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCE
T ss_pred hhheeeeeccCce--EEEEECCCCCcEEEEec--CCceEEEEEEecccCCccccccccccccccccccccccccCCCCce
Confidence 4556666664444 6999999998 777766 4569999999 9998 3444432 11 22
Q ss_pred eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019103 151 FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 151 FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
....+..+++.|+.. -.++.+.++| .+.+.+.++... .-....+++|++.|+++..++.|.++|..+.+.+.++..
T Consensus 112 ~~~~~s~~~~~l~~~-~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 112 TCLAWSHDGNSIVTG-VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp EEEEECTTSSEEEEE-ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred EEEEEcCCCCEEEEE-eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence 232223334555444 4578999999 778888888742 224455778999999988889999999999999888776
Q ss_pred ccCCeee----------eeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEE
Q 019103 229 RYKGREV----------RNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAW 297 (346)
Q Consensus 229 ~~~G~pv----------~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~ 297 (346)
....... ..+..+.+. ++.+++ .-..+.|.+.|..+++.+..+... ....+.++|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~i~~~d~~~~~~~~~~~~~-------------~~~i~~~~~ 255 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDDDKFVI-PGPKGAIFVYQITEKTPTGKLIGH-------------HGPISVLEF 255 (425)
T ss_dssp C---------------CCCBSCCEEEETTEEEE-ECGGGCEEEEETTCSSCSEEECCC-------------SSCEEEEEE
T ss_pred cccCccceeeccccCCcceeeEEEEcCCCEEEE-EcCCCeEEEEEcCCCceeeeeccC-------------CCceEEEEE
Confidence 4421000 002335555 455444 445788999999999887776321 124688999
Q ss_pred eCCCCEEEEecCCCCcEEEEEE
Q 019103 298 DSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 298 d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+|+++.|++++ ....|+-.++
T Consensus 256 ~~~~~~l~~~~-~d~~i~i~d~ 276 (425)
T 1r5m_A 256 NDTNKLLLSAS-DDGTLRIWHG 276 (425)
T ss_dssp ETTTTEEEEEE-TTSCEEEECS
T ss_pred CCCCCEEEEEc-CCCEEEEEEC
Confidence 99998766665 4455544443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-06 Score=81.83 Aligned_cols=194 Identities=10% Similarity=0.064 Sum_probs=133.7
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTG 172 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v 172 (346)
++..++.. .......+.+.+++.++.+ + ++..|++||+.+++.+..+.-.... ...++... +.++++.-.++.+
T Consensus 134 ~~~~~~~~-h~~~v~~~~~~~~~~l~s~-s--~d~~i~~wd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~sg~~d~~v 208 (340)
T 1got_B 134 RVSRELAG-HTGYLSCCRFLDDNQIVTS-S--GDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGACDASA 208 (340)
T ss_dssp EEEEEEEC-CSSCEEEEEEEETTEEEEE-E--TTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETTSCE
T ss_pred eeEEEecC-CCccEEEEEECCCCcEEEE-E--CCCcEEEEECCCCcEEEEEcCCCCc-eEEEEECCCCCEEEEEeCCCcE
Confidence 44555542 2334477888888886544 4 4569999999999988776533221 23345443 4466666778999
Q ss_pred EEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEE
Q 019103 173 FIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVW 249 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~Ly 249 (346)
.++|..+.+.+.++... .-....++||++.|+....+++|.++|..+.+.+.++..... ...+..+.+. +|.+.
T Consensus 209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l 285 (340)
T 1got_B 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI---ICGITSVSFSKSGRLL 285 (340)
T ss_dssp EEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC---CSCEEEEEECTTSSEE
T ss_pred EEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCc---ccceEEEEECCCCCEE
Confidence 99999999999988642 124556788999988877788999999999887765543221 1123345554 56666
Q ss_pred EEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 250 ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 250 aNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
+....++.|.+-|..+++.+..+.-. ....+.++|+|+++.|...+
T Consensus 286 ~~g~~d~~i~vwd~~~~~~~~~~~~h-------------~~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 286 LAGYDDFNCNVWDALKADRAGVLAGH-------------DNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECC-------------SSCEEEEEECTTSSCEEEEE
T ss_pred EEECCCCeEEEEEcccCcEeeEeecC-------------CCcEEEEEEcCCCCEEEEEc
Confidence 66667889999999999988877421 12457899999988766554
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=2e-07 Score=97.32 Aligned_cols=181 Identities=13% Similarity=0.086 Sum_probs=126.5
Q ss_pred eeEEEecC-CEEEEEcCCC------------CC----CeEEEEECCCCcEEEEeccCC----------CeeEEEEEEeCC
Q 019103 108 QGLLYAEN-DTLFESTGLY------------GR----SSVRRVALETGKVEAINQMEG----------SYFGEGLTLLGE 160 (346)
Q Consensus 108 qGL~~~~d-~~LyeStGly------------g~----s~V~~iDl~Tgkv~~~~~l~~----------~~FgeGit~~g~ 160 (346)
.++.++++ +.+|++++.- |+ ++|..+|++||+++-..++.+ .+.-.+...+|+
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 36788865 4899988631 11 369999999999988876532 232333344452
Q ss_pred --EEEEEEeeCCEEEEEECCCCcEEEEEecC-CC------------------------------------ceeEEeeCCC
Q 019103 161 --KLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MK------------------------------------DGWGLATDGK 201 (346)
Q Consensus 161 --~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~p------------------------------------eGwGLt~Dg~ 201 (346)
.+++..-+++.++++|++|++++.+++.. .+ .+.+++++++
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 44445557899999999999999988753 11 1346788899
Q ss_pred EEEEE-C--------------C----------------------------CCeEEEEeCCCCcEEEEEEeccC--Ceeee
Q 019103 202 VLFGS-D--------------G----------------------------SSMLYQIDPQTLKVIRKDIVRYK--GREVR 236 (346)
Q Consensus 202 ~LyvS-d--------------G----------------------------s~~l~vIDp~T~kvi~~I~V~~~--G~pv~ 236 (346)
.+|+. + | .+.|+.||+.|++++-+++.+.. |-+
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~-- 483 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGT-- 483 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCE--
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcc--
Confidence 99994 2 1 16899999999999988887541 222
Q ss_pred eceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 237 NLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 237 ~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
+...++.||+. -.++.+.++|.+||+++..+.++.-. ...| +.|..+|+.+++.
T Consensus 484 ----~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~~~~~~~----------~~~p--~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 484 ----LTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPTGTGV----------VAAP--STYMVDGRQYVSV 537 (677)
T ss_dssp ----EEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCC----------CSCC--EEEEETTEEEEEE
T ss_pred ----eEeCCCEEEEE-CCCCcEEEEECCCCceeeeeeCCCCc----------ccCC--EEEEeCCEEEEEE
Confidence 44567889987 46889999999999999999874210 1122 6677777666654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-07 Score=90.04 Aligned_cols=190 Identities=15% Similarity=0.117 Sum_probs=112.3
Q ss_pred cceeEEEecC----CEEEEEcCCCCC---CeEEEEECCCCcE------EEEecc--CCCeeEEEEEEe-CCEEEEEEee-
Q 019103 106 FTQGLLYAEN----DTLFESTGLYGR---SSVRRVALETGKV------EAINQM--EGSYFGEGLTLL-GEKLFQVTWL- 168 (346)
Q Consensus 106 FTqGL~~~~d----~~LyeStGlyg~---s~V~~iDl~Tgkv------~~~~~l--~~~~FgeGit~~-g~~LY~ltw~- 168 (346)
...||++++| +.||++....+. +.|.+++.+.+++ ...++. ....++.+++.. ++.||+++..
T Consensus 76 ~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~ 155 (352)
T 2ism_A 76 GLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEV 155 (352)
T ss_dssp SEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCT
T ss_pred CceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCC
Confidence 3479999997 689998652221 6899999886533 122331 223466778875 3589999753
Q ss_pred ------------CCEEEEEECCCC------------cEEEEEecC--CCceeEEeeCCCEEEEEC-CCCe--------EE
Q 019103 169 ------------QKTGFIYDQNNL------------NKLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSM--------LY 213 (346)
Q Consensus 169 ------------~~~v~V~D~~tl------------~~i~ti~~~--~peGwGLt~Dg~~LyvSd-Gs~~--------l~ 213 (346)
.++|+.+|++.- .....+.++ .|.|.+++++++.||++| |.+. |.
T Consensus 156 ~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~ 235 (352)
T 2ism_A 156 YERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVN 235 (352)
T ss_dssp TCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEE
T ss_pred CCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEE
Confidence 368999998640 122234444 367777778778899998 6554 56
Q ss_pred EEeCCCCc----EEEEEEeccCCeeee------eceeeEeeCCEEEEEecCCCeEEEEeCCCCe----EEEEEECCchhh
Q 019103 214 QIDPQTLK----VIRKDIVRYKGREVR------NLNELEFIKGEVWANVWQTDCIARISHEDGV----VLGWVLLPNLRE 279 (346)
Q Consensus 214 vIDp~T~k----vi~~I~V~~~G~pv~------~lNELE~~~G~LyaNv~~sn~I~vID~~TG~----Vv~~I~l~~l~~ 279 (346)
.|.+...- ............|+. .+.-+.+.+|.+|+..+..+.|.+|+++... +...-.+ ..
T Consensus 236 ~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~---~~ 312 (352)
T 2ism_A 236 LIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETA---LS 312 (352)
T ss_dssp EECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEE---EE
T ss_pred EeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchhee---cc
Confidence 65543200 000000000001111 1234667799999999999999999987653 2111111 00
Q ss_pred hhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 280 RLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 280 ~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
...-|.+||++|||. |||+
T Consensus 313 --------~~~rp~~v~~~pdG~-lyv~ 331 (352)
T 2ism_A 313 --------GFGRLREVQVGPDGA-LYVT 331 (352)
T ss_dssp --------SSCCEEEEEECTTSC-EEEE
T ss_pred --------cCCCeeEEEECCCCc-EEEE
Confidence 112589999999985 5555
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-07 Score=95.79 Aligned_cols=205 Identities=13% Similarity=0.119 Sum_probs=137.4
Q ss_pred ceeEEEec-CCE----EEEEcCCCCCCeEEEEECCCCcEEEEeccCCC----eeEEEEEEeCCEEEEEEe-----eCCEE
Q 019103 107 TQGLLYAE-NDT----LFESTGLYGRSSVRRVALETGKVEAINQMEGS----YFGEGLTLLGEKLFQVTW-----LQKTG 172 (346)
Q Consensus 107 TqGL~~~~-d~~----LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~----~FgeGit~~g~~LY~ltw-----~~~~v 172 (346)
..|+++.+ +++ +|+.+. +..|..+|.+||+++=+..++.. .+...-.+.++++|+.+. .++.+
T Consensus 108 ~~g~av~p~~g~~~~rV~v~t~---dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v 184 (599)
T 1w6s_A 108 NRGLAYWPGDGKTPALILKTQL---DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYL 184 (599)
T ss_dssp CCCCEEECCCSSSCCEEEEECT---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEE
T ss_pred ccceEEEecCCcceeEEEEEcC---CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeE
Confidence 46888842 456 999865 35999999999999888776541 111122446889998765 47899
Q ss_pred EEEECCCCcEEEEEecCCCc-------------------------------------ee---EEeeCCCEEEEECCC---
Q 019103 173 FIYDQNNLNKLEEFTHQMKD-------------------------------------GW---GLATDGKVLFGSDGS--- 209 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~pe-------------------------------------Gw---GLt~Dg~~LyvSdGs--- 209 (346)
+.||++|++++-+++...+. -| .+.++.+.+|+..|+
T Consensus 185 ~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p 264 (599)
T 1w6s_A 185 TAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAP 264 (599)
T ss_dssp EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC
T ss_pred EEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCcc
Confidence 99999999999998864222 12 355678899997653
Q ss_pred -------------CeEEEEeCCCCcEEEEEEeccC--------CeeeeeceeeEeeCC---EEEEEecCCCeEEEEeCCC
Q 019103 210 -------------SMLYQIDPQTLKVIRKDIVRYK--------GREVRNLNELEFIKG---EVWANVWQTDCIARISHED 265 (346)
Q Consensus 210 -------------~~l~vIDp~T~kvi~~I~V~~~--------G~pv~~lNELE~~~G---~LyaNv~~sn~I~vID~~T 265 (346)
+.|+-+|++|++++=+.+...+ ..|+ +-++...+| .+++..-....+.++|.+|
T Consensus 265 ~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~--l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t 342 (599)
T 1w6s_A 265 WNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM--LSEQKDKDGKARKLLTHPDRNGIVYTLDRTD 342 (599)
T ss_dssp SCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE--EEEEECTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccE--EEeccccCCcEEEEEEEECCCcEEEEEECCC
Confidence 5899999999999877776431 1121 111111356 5565555678999999999
Q ss_pred CeEEEEEECCch---------hhh---h--------------hhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 266 GVVLGWVLLPNL---------RER---L--------------VAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 266 G~Vv~~I~l~~l---------~~~---~--------------~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
|+++-...+..- ... . .-.+...+....++||||+++.+||...+++..++
T Consensus 343 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~ 419 (599)
T 1w6s_A 343 GALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWE 419 (599)
T ss_dssp CCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeee
Confidence 999988765320 000 0 00001123345789999999999998666655444
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.3e-07 Score=82.29 Aligned_cols=195 Identities=12% Similarity=0.060 Sum_probs=131.9
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc----EEEEeccCCCeeEEEEEE-eCCEEEEEEee
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK----VEAINQMEGSYFGEGLTL-LGEKLFQVTWL 168 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk----v~~~~~l~~~~FgeGit~-~g~~LY~ltw~ 168 (346)
+.+.+++. .......+.|++++.++.+.+ .+..|++||+.+++ +.....-.... -..+.. .++.+ ++.-.
T Consensus 88 ~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~--~d~~v~iw~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~l-~s~s~ 162 (340)
T 1got_B 88 NKVHAIPL-RSSWVMTCAYAPSGNYVACGG--LDNICSIYNLKTREGNVRVSRELAGHTGY-LSCCRFLDDNQI-VTSSG 162 (340)
T ss_dssp CEEEEEEC-SSSCEEEEEECTTSSEEEEEE--TTCEEEEEETTTCSBSCEEEEEEECCSSC-EEEEEEEETTEE-EEEET
T ss_pred CcceEeec-CCccEEEEEECCCCCEEEEEe--CCCeEEEEECccCCCcceeEEEecCCCcc-EEEEEECCCCcE-EEEEC
Confidence 34556664 234457899999998877777 45699999998863 33332221111 222333 34554 44556
Q ss_pred CCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-C
Q 019103 169 QKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~ 245 (346)
++.+.++|.++.+.+.++... .-....+++|++.++....++.|.++|..+.+.+.++.-.. .+ ++.+.+. +
T Consensus 163 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~--~~---v~~v~~~p~ 237 (340)
T 1got_B 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SD---INAICFFPN 237 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SC---EEEEEECTT
T ss_pred CCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc--CC---EEEEEEcCC
Confidence 889999999999999988642 12344567888888877778899999999998877665422 22 3446665 5
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 246 GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
|..++..-.+++|.+.|..+++.+..+.... .......++|+|+++.|++.+.
T Consensus 238 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~g~~l~~g~~ 290 (340)
T 1got_B 238 GNAFATGSDDATCRLFDLRADQELMTYSHDN-----------IICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCTT-----------CCSCEEEEEECTTSSEEEEEET
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEEccCC-----------cccceEEEEECCCCCEEEEECC
Confidence 6667766678899999999999887764311 1123578999999887766553
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.8e-07 Score=84.67 Aligned_cols=186 Identities=8% Similarity=0.069 Sum_probs=128.2
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
.....+.|++++..+.+++ ++..|++||+.+++.+..+.-. .......+.+.. +.++++.-.++.+.++|..+.+.
T Consensus 155 ~~v~~~~~~~~~~~l~t~s--~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~ 232 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTAS--GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232 (354)
T ss_dssp SCEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred CcEEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 3347899998886666666 5679999999999988777543 333333333332 34555556789999999999999
Q ss_pred EEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEE
Q 019103 183 LEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIA 259 (346)
Q Consensus 183 i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~ 259 (346)
+.++... .-....++||++.|+....+++|.++|..+.+.+....-... ....+.+.+. +|.+.+....++.|.
T Consensus 233 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~l~~g~~d~~i~ 309 (354)
T 2pbi_B 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI---IFGASSVDFSLSGRLLFAGYNDYTIN 309 (354)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC---CSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCc---ccceeEEEEeCCCCEEEEEECCCcEE
Confidence 9988642 123455778999888877788999999998876554432211 1112234454 566666666788999
Q ss_pred EEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 260 RISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 260 vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
+-|..+|+.+..+.- + .+..+.++|+|+++.|..++
T Consensus 310 vwd~~~~~~~~~l~~---------h----~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 310 VWDVLKGSRVSILFG---------H----ENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp EEETTTCSEEEEECC---------C----SSCEEEEEECTTSSCEEEEE
T ss_pred EEECCCCceEEEEEC---------C----CCcEEEEEECCCCCEEEEEc
Confidence 999999998876621 1 13467899999998665554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.7e-07 Score=91.64 Aligned_cols=162 Identities=14% Similarity=0.103 Sum_probs=114.9
Q ss_pred eEEEec-CCEEEEEcCCC---------C----CCeEEEEECCCCcEEEEeccCC----------CeeEEEEEEeCC--EE
Q 019103 109 GLLYAE-NDTLFESTGLY---------G----RSSVRRVALETGKVEAINQMEG----------SYFGEGLTLLGE--KL 162 (346)
Q Consensus 109 GL~~~~-d~~LyeStGly---------g----~s~V~~iDl~Tgkv~~~~~l~~----------~~FgeGit~~g~--~L 162 (346)
.+++++ ++.+|+++|.- + .+.|..+|++||+++=+.++.+ .+--.+...+|+ ++
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 467775 46899998631 1 1479999999999988776532 222222223343 45
Q ss_pred EEEEeeCCEEEEEECCCCcEEEEEecCC--------------C---------------------------ceeEEeeCCC
Q 019103 163 FQVTWLQKTGFIYDQNNLNKLEEFTHQM--------------K---------------------------DGWGLATDGK 201 (346)
Q Consensus 163 Y~ltw~~~~v~V~D~~tl~~i~ti~~~~--------------p---------------------------eGwGLt~Dg~ 201 (346)
++..-+++.++++|++|++++.++++.. | .+.+++++++
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 5555678899999999999999887531 0 1345778889
Q ss_pred EEEEEC-------------------------------------CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019103 202 VLFGSD-------------------------------------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 202 ~LyvSd-------------------------------------Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
.+|+.. ..+.|+.+|++|++++-++..+.... . .-+...
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~--~--~~~~t~ 474 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAW--G--GTLYTK 474 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCC--S--BCEEET
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCcc--c--eeEEEC
Confidence 999942 24689999999999998887754211 1 113345
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEECC
Q 019103 245 KGEVWANVWQTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
+|.||+.. .+..|..+|.+||+++-++.+.
T Consensus 475 gg~v~~g~-~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 475 GGLVWYAT-LDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp TTEEEEEC-TTSEEEEEETTTCCEEEEEECS
T ss_pred CCEEEEEc-CCCeEEEEECCCCCEEEEEeCC
Confidence 88999964 4789999999999999999873
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.86 E-value=6.9e-07 Score=81.87 Aligned_cols=202 Identities=7% Similarity=-0.042 Sum_probs=133.1
Q ss_pred eEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-eEEEEEEeCCEEEEEEeeCC
Q 019103 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 93 ~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-FgeGit~~g~~LY~ltw~~~ 170 (346)
+++.+++. |. ....++.|+||+.++.+++ .+..|++||+.+++.+..+.....+ ....+..+++.|+. .-.++
T Consensus 3 l~~~~~~~~h~--~~V~~~~fsp~~~~l~s~~--~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~s~d~ 77 (304)
T 2ynn_A 3 LDIKKTFSNRS--DRVKGIDFHPTEPWVLTTL--YSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIV-GSDDF 77 (304)
T ss_dssp CCCEEEEEEEC--SCEEEEEECSSSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEE-EETTS
T ss_pred ceeEEeecCCC--CceEEEEECCCCCEEEEEc--CCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEE-ECCCC
Confidence 34455554 42 2347999999998888877 5569999999999988887765433 33333444555544 45679
Q ss_pred EEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CC
Q 019103 171 TGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KG 246 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G 246 (346)
.+.++|.++.+.+.++... .-....++||++.|+.+..+.+|.++|.++........-+ +..+ ++.+.+. ++
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~-h~~~---v~~v~~~p~~~ 153 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-HEHF---VMCVAFNPKDP 153 (304)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC-CCSC---EEEEEECTTCT
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc-cCCc---EEEEEECCCCC
Confidence 9999999999999998742 1234557889999888777899999998877544332221 1122 2345554 55
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCC-CEEEEecCCCCcEE
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNR-NRIFVTGKLWPKLY 315 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~-~~LfVTGK~Wp~l~ 315 (346)
.++|+.-.++.|.+-|..+++....+.... ....+.+++.|.. +.+++||-...+|.
T Consensus 154 ~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQ------------ERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp TEEEEEETTSEEEEEETTCSSCSEEEECCC------------TTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred CEEEEEeCCCeEEEEECCCCCccceeccCC------------cCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 667766678899999998887655553211 1134567787632 24555555555443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-06 Score=82.25 Aligned_cols=209 Identities=13% Similarity=0.060 Sum_probs=132.1
Q ss_pred EEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEE
Q 019103 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v 172 (346)
+.+.++. |. .....+.|++++..+.+++ .+..|++||+.+++....+..........+.+.+++++++.-.++.+
T Consensus 156 ~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 156 KIVMILQGHE--QDIYSLDYFPSGDKLVSGS--GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp EEEEEECCCS--SCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred cEEEEEccCC--CCEEEEEEcCCCCEEEEec--CCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 4455554 43 2346899999997777777 56799999999999888777665543333333245566666678999
Q ss_pred EEEECCCCcEEEEEecC---------CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC--------Ceee
Q 019103 173 FIYDQNNLNKLEEFTHQ---------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--------GREV 235 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~---------~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~--------G~pv 235 (346)
.++|..+.+.+.++..+ .-....+++||+.|+....+++|.++|..+.+.......... |+.
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~- 310 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK- 310 (393)
T ss_dssp EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCS-
T ss_pred EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc-
Confidence 99999999988887421 113345778999998877788999999887544322111100 110
Q ss_pred eeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCC-----CCEEEEecC
Q 019103 236 RNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSN-----RNRIFVTGK 309 (346)
Q Consensus 236 ~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~-----~~~LfVTGK 309 (346)
..++.+.+. +|...+..-.+..|.+-|.++|+.+..+.-. ....+.+|+.+. ...+++||-
T Consensus 311 ~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h-------------~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 311 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-------------RNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-------------SSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC-------------CCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 012234343 4555555556889999999999988877431 123567888864 346778887
Q ss_pred CCCcEEEEEEe
Q 019103 310 LWPKLYEINLR 320 (346)
Q Consensus 310 ~Wp~l~ev~l~ 320 (346)
...++.--++.
T Consensus 378 ~Dg~i~iW~~~ 388 (393)
T 1erj_A 378 GDCKARIWKYK 388 (393)
T ss_dssp TTSEEEEEEEE
T ss_pred CCCcEEECccc
Confidence 77766555443
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.4e-07 Score=86.08 Aligned_cols=197 Identities=10% Similarity=0.032 Sum_probs=134.1
Q ss_pred EEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCEEE
Q 019103 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGF 173 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~v~ 173 (346)
+.++.. .......+.|++++.++.+++ .+..|++||+.+++.+..+.-.... -..++. .++.|+ +.-.++.+.
T Consensus 143 ~~~l~~-h~~~V~~v~~~~~~~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~~-V~~v~~~p~~~~l~-s~s~D~~i~ 217 (410)
T 1vyh_C 143 ERTLKG-HTDSVQDISFDHSGKLLASCS--ADMTIKLWDFQGFECIRTMHGHDHN-VSSVSIMPNGDHIV-SASRDKTIK 217 (410)
T ss_dssp CEEECC-CSSCEEEEEECTTSSEEEEEE--TTSCCCEEETTSSCEEECCCCCSSC-EEEEEECSSSSEEE-EEETTSEEE
T ss_pred EEEEec-cCCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEEcCCCCC-EEEEEEeCCCCEEE-EEeCCCeEE
Confidence 445542 233457999999998888877 5569999999999987776432221 233444 445554 445689999
Q ss_pred EEECCCCcEEEEEecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-------
Q 019103 174 IYDQNNLNKLEEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI------- 244 (346)
Q Consensus 174 V~D~~tl~~i~ti~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~------- 244 (346)
++|..+.+.+.++.... -....+++||+.|+.+..++.|.++|..+.+...++.-.. .++ +.+.+.
T Consensus 218 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~--~~v---~~~~~~~~~~~~~ 292 (410)
T 1vyh_C 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR--HVV---ECISWAPESSYSS 292 (410)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS--SCE---EEEEECCSCGGGG
T ss_pred EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCC--ceE---EEEEEcCcccccc
Confidence 99999999999987431 1233456788888887778899999999988876654322 122 122222
Q ss_pred --------------CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 245 --------------KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 245 --------------~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+|...++.-.++.|.+.|..+|+.+.++.-. .+..++++|+|+++.|+..+ .
T Consensus 293 ~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-------------~~~v~~v~~~~~g~~l~s~s-~ 358 (410)
T 1vyh_C 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-------------DNWVRGVLFHSGGKFILSCA-D 358 (410)
T ss_dssp GGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC-------------SSCEEEEEECSSSSCEEEEE-T
T ss_pred hhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC-------------CCcEEEEEEcCCCCEEEEEe-C
Confidence 2555666666889999999999998887421 12468899999988777655 3
Q ss_pred CCcEEE
Q 019103 311 WPKLYE 316 (346)
Q Consensus 311 Wp~l~e 316 (346)
...|+-
T Consensus 359 D~~i~v 364 (410)
T 1vyh_C 359 DKTLRV 364 (410)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 444433
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-07 Score=85.62 Aligned_cols=205 Identities=12% Similarity=0.116 Sum_probs=130.3
Q ss_pred ceeEEEecC----C---EEEEEcCCCCCCeEEEEECCCCcE-----EEEeccC------CCeeEEEEE----EeCCEEEE
Q 019103 107 TQGLLYAEN----D---TLFESTGLYGRSSVRRVALETGKV-----EAINQME------GSYFGEGLT----LLGEKLFQ 164 (346)
Q Consensus 107 TqGL~~~~d----~---~LyeStGlyg~s~V~~iDl~Tgkv-----~~~~~l~------~~~FgeGit----~~g~~LY~ 164 (346)
...+.|+++ + .++.+.+ .+..|++||+.+++. ...+... .......+. .+++.+++
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 142 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTS--FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 142 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEE--TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred EEEEEEecccccCCccccEEEEEc--CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEE
Confidence 478999998 8 8777777 456999999999885 5555433 444444444 44565244
Q ss_pred EEeeCCEEEEEECCC------CcEEE-----EEec--------C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEE
Q 019103 165 VTWLQKTGFIYDQNN------LNKLE-----EFTH--------Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (346)
Q Consensus 165 ltw~~~~v~V~D~~t------l~~i~-----ti~~--------~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~ 224 (346)
+.-.++.+.++|..+ .+.+. ++.. . ......+++|+ .+++...++.|.++|..+.+.+.
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 221 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 221 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeE
Confidence 455679999999988 66665 6631 1 23556678889 77777778999999999999888
Q ss_pred EEEe---cc-CCeeeeeceeeEee-CCEEEEEecCC---CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEE
Q 019103 225 KDIV---RY-KGREVRNLNELEFI-KGEVWANVWQT---DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIA 296 (346)
Q Consensus 225 ~I~V---~~-~G~pv~~lNELE~~-~G~LyaNv~~s---n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA 296 (346)
++.. .. ...++ +.+.+. +|.+++..-.+ ..|.+.|..+++.+..+....................+.++
T Consensus 222 ~~~~~~~h~~~~~~i---~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 222 NFESQHSMINNSNSI---RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp EEECCC---CCCCCE---EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred EEeccccccccCCcc---ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 8876 20 01222 345554 45544444445 78999999999999888431100000000000123568899
Q ss_pred EeCCCCEEEEecCCCCcEEEEE
Q 019103 297 WDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 297 ~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
|+|+++.|+..+ ....|+--+
T Consensus 299 ~~~~~~~l~~~~-~dg~i~iwd 319 (397)
T 1sq9_A 299 FNDSGETLCSAG-WDGKLRFWD 319 (397)
T ss_dssp ECSSSSEEEEEE-TTSEEEEEE
T ss_pred ECCCCCEEEEEe-CCCeEEEEE
Confidence 999998776665 344444433
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-06 Score=84.06 Aligned_cols=209 Identities=13% Similarity=0.144 Sum_probs=125.4
Q ss_pred eeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc-EEEEecc--CCCeeEEEEEEe-----CCEE
Q 019103 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-VEAINQM--EGSYFGEGLTLL-----GEKL 162 (346)
Q Consensus 91 ~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l--~~~~FgeGit~~-----g~~L 162 (346)
++++++.+ + -....||++++||+||++.- . .+|.++| .+|+ .+..+++ ....-..||+++ ++.|
T Consensus 19 ~~~~~va~---~-l~~P~~ia~~pdG~l~V~e~--~-g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~l 90 (354)
T 3a9g_A 19 FKISEVAS---D-LEVPWSIAPLGGGRYLVTER--P-GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWV 90 (354)
T ss_dssp EEEEEEEC---S-CSCEEEEEEEETTEEEEEET--T-TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEE
T ss_pred eEEEEEeC---C-CCCCeEEEEcCCCeEEEEeC--C-CEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEE
Confidence 45666654 1 22337999999999999964 2 5999998 4565 2333221 111223567776 4699
Q ss_pred EEEEee---C----CEEEEEECCCC-------cE-EEEEecC---CCceeEEeeCCCEEEEECCC--------------C
Q 019103 163 FQVTWL---Q----KTGFIYDQNNL-------NK-LEEFTHQ---MKDGWGLATDGKVLFGSDGS--------------S 210 (346)
Q Consensus 163 Y~ltw~---~----~~v~V~D~~tl-------~~-i~ti~~~---~peGwGLt~Dg~~LyvSdGs--------------~ 210 (346)
|++... + +.|+.++.+.. +. +..++.. .+.+..+.+|| +||+++|+ .
T Consensus 91 yv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G 169 (354)
T 3a9g_A 91 YLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAG 169 (354)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSS
T ss_pred EEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCe
Confidence 999764 3 78999987643 22 2335532 35667788888 59999763 3
Q ss_pred eEEEEeCCCC----------cEE----------------EEEEeccCC-------------------------------e
Q 019103 211 MLYQIDPQTL----------KVI----------------RKDIVRYKG-------------------------------R 233 (346)
Q Consensus 211 ~l~vIDp~T~----------kvi----------------~~I~V~~~G-------------------------------~ 233 (346)
+|+.||+... ++. .++-+.+.| .
T Consensus 170 ~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~ 249 (354)
T 3a9g_A 170 KILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVD 249 (354)
T ss_dssp EEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCC
T ss_pred EEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcC
Confidence 7888887532 120 111111111 1
Q ss_pred eeee-------ceeeEe--------eCCEEEEEecCCCeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCceeeEEEE
Q 019103 234 EVRN-------LNELEF--------IKGEVWANVWQTDCIARISHED-GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAW 297 (346)
Q Consensus 234 pv~~-------lNELE~--------~~G~LyaNv~~sn~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~ 297 (346)
|+.. +.-+.+ .+|.+|++.+..+.|.+++++. |++...-.+ +.. ....|.+|++
T Consensus 250 p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~--~~~--------~~~rp~~v~~ 319 (354)
T 3a9g_A 250 PVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF--FKN--------VFGRLRDVVI 319 (354)
T ss_dssp CSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE--CTT--------TSCCEEEEEE
T ss_pred CEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee--ccC--------CCCCeeEEEE
Confidence 1111 222333 3678999999899999999986 455432221 110 1235789999
Q ss_pred eCCCCEEEEecC---CC-------CcEEEEEE
Q 019103 298 DSNRNRIFVTGK---LW-------PKLYEINL 319 (346)
Q Consensus 298 d~~~~~LfVTGK---~W-------p~l~ev~l 319 (346)
+||| .|||+.- .| ++||+|..
T Consensus 320 ~pDG-~lyv~~~~~~G~g~~~~~~g~i~ri~~ 350 (354)
T 3a9g_A 320 DDDG-GILISTSNRDGRGSLRAGDDKILKIVS 350 (354)
T ss_dssp CTTS-CEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred CCCC-cEEEEEeCCCCCcCCCCCCCEEEEEec
Confidence 9998 5777642 23 28999863
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-07 Score=86.52 Aligned_cols=175 Identities=10% Similarity=0.061 Sum_probs=127.1
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
-...+.|+|++.++++++ .+..|++||+.+|+....+.-.... ...++... +.+.++.-.++.+.++|.++.+.+.
T Consensus 110 ~V~~~~~~p~~~~l~s~s--~Dg~i~vwd~~~~~~~~~l~~h~~~-V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~ 186 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSAS--EDATIKVWDYETGDFERTLKGHTDS-VQDISFDHSGKLLASCSADMTIKLWDFQGFECIR 186 (410)
T ss_dssp CEEEEEECSSSSEEEEEE--SSSCEEEEETTTCCCCEEECCCSSC-EEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred cEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEEeccCCc-EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Confidence 346899999998888887 5669999999999987776543221 23344432 3345555678999999999999998
Q ss_pred EEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEE
Q 019103 185 EFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARI 261 (346)
Q Consensus 185 ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vI 261 (346)
++... .-....++||++.|+.+..+.+|.++|.++.+.+.++.-.. .. ++.+.+. +|.++++.-.++.|.+.
T Consensus 187 ~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~--~~---v~~~~~~~~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 187 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EW---VRMVRPNQDGTLIASCSNDQTVRVW 261 (410)
T ss_dssp CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SC---EEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCC--cc---EEEEEECCCCCEEEEEcCCCeEEEE
Confidence 88632 12345577899999888788999999999999887776432 12 2334444 57777777778999999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCC
Q 019103 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNR 301 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~ 301 (346)
|..+++.+..+.- .....+.++|+|++
T Consensus 262 d~~~~~~~~~~~~-------------h~~~v~~~~~~~~~ 288 (410)
T 1vyh_C 262 VVATKECKAELRE-------------HRHVVECISWAPES 288 (410)
T ss_dssp ETTTCCEEEEECC-------------CSSCEEEEEECCSC
T ss_pred ECCCCceeeEecC-------------CCceEEEEEEcCcc
Confidence 9999998887732 12356788998863
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-06 Score=80.65 Aligned_cols=202 Identities=10% Similarity=-0.015 Sum_probs=134.8
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEE
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTG 172 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v 172 (346)
.+.++.. .......+.++|++.++.+++ .+..|++||+.++........+....-..++.. ++.++++.-.++.+
T Consensus 89 ~~~~~~~-h~~~v~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 89 KVVDFEA-HPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp EEEEEEC-CSSCEEEEEECSSSSEEEEEE--TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred EEEEEeC-CCCcEEEEEEcCCCCEEEEEC--CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 4445542 233457999999998888877 567999999999855443332322233445554 34566666778999
Q ss_pred EEEECCCCcEEEEEecCCCce---eEEee--CCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC
Q 019103 173 FIYDQNNLNKLEEFTHQMKDG---WGLAT--DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG 246 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~peG---wGLt~--Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G 246 (346)
.++|..+.+...++..+...+ ..+.+ |++.|+.+..+++|.++|.++.+.+.++.-.. .++ +.+.+. ++
T Consensus 166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v---~~~~~~p~~ 240 (304)
T 2ynn_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNV---SFAVFHPTL 240 (304)
T ss_dssp EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCE---EEEEECSSS
T ss_pred EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCE---EEEEECCCC
Confidence 999998887777665432222 22333 67778777778899999999999888776533 222 234444 45
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEE-EEecCCCCcEEEEE
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRI-FVTGKLWPKLYEIN 318 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~L-fVTGK~Wp~l~ev~ 318 (346)
.+.++.-.+..|.+-|..+++++.++.... .....+|+.|+++.. +++| ..+.+.-+.
T Consensus 241 ~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~asg-~~~g~~~~~ 299 (304)
T 2ynn_A 241 PIIISGSEDGTLKIWNSSTYKVEKTLNVGL-------------ERSWCIATHPTGRKNYIASG-FDNGFTVLS 299 (304)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCSS-------------SSEEEEEECTTCGGGCEEEE-ETTEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeeeccCCC-------------ccEEEEEECCCCCceEEEEe-cCCceEEEE
Confidence 666776678899999999999999985411 134679999988765 4444 344444333
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-06 Score=81.04 Aligned_cols=201 Identities=9% Similarity=0.052 Sum_probs=135.1
Q ss_pred eEEEEEEe-cCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeC--CEEEEEEe
Q 019103 93 IQVVNEFP-HDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLG--EKLFQVTW 167 (346)
Q Consensus 93 ~~Vv~t~p-hd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g--~~LY~ltw 167 (346)
+++.+++. |.. -...+.+++++ .++.+.+ .+..|++||+.+++......+ +...--..++... +.++++.-
T Consensus 63 ~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 63 YKLHRTASPFDR--RVTSLEWHPTHPTTVAVGS--KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp CEEEEEECCCSS--CEEEEEECSSCTTEEEEEE--BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cceEEeccCCCC--CEEEEEECCCCCCEEEEEc--CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 45555653 433 33789999988 7777766 456999999999998877764 2222223455543 35555666
Q ss_pred eCCEEEEEECCCCcEEEEEecCC-----CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE
Q 019103 168 LQKTGFIYDQNNLNKLEEFTHQM-----KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (346)
Q Consensus 168 ~~~~v~V~D~~tl~~i~ti~~~~-----peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE 242 (346)
.++.+.++|..+ +.+..+.... -....+++|++.|++...++.|.++|. +.+.+.++.-.. .+ ++.+.
T Consensus 139 ~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~--~~---v~~~~ 211 (383)
T 3ei3_B 139 IRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK--AK---VTHAE 211 (383)
T ss_dssp TTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS--SC---EEEEE
T ss_pred CCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC--Cc---EEEEE
Confidence 789999999986 5555554321 234557889999999888899999998 566666655422 22 33455
Q ss_pred ee-CCE-EEEEecCCCeEEEEeCCC----CeEEEEEECCchhhhhhhccCCCCceeeEEEEeC-CCCEEEEecCCCCcEE
Q 019103 243 FI-KGE-VWANVWQTDCIARISHED----GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDS-NRNRIFVTGKLWPKLY 315 (346)
Q Consensus 243 ~~-~G~-LyaNv~~sn~I~vID~~T----G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~LfVTGK~Wp~l~ 315 (346)
+. ++. +++..-.+..|.+.|..+ ++++..+.- ....+.++|+| +++.|++++. ...|+
T Consensus 212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~~l~~~~~-d~~i~ 276 (383)
T 3ei3_B 212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPH--------------EKPVNAAYFNPTDSTKLLTTDQ-RNEIR 276 (383)
T ss_dssp ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEEC--------------SSCEEEEEECTTTSCEEEEEES-SSEEE
T ss_pred ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecC--------------CCceEEEEEcCCCCCEEEEEcC-CCcEE
Confidence 65 344 677766788999999998 667766632 12468899999 8877766654 45555
Q ss_pred EEEE
Q 019103 316 EINL 319 (346)
Q Consensus 316 ev~l 319 (346)
-..+
T Consensus 277 iwd~ 280 (383)
T 3ei3_B 277 VYSS 280 (383)
T ss_dssp EEET
T ss_pred EEEC
Confidence 4443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.8e-07 Score=94.03 Aligned_cols=206 Identities=11% Similarity=0.116 Sum_probs=137.2
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CC----eeEEEEEEeCCEEEEEEee-----CCEEEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GS----YFGEGLTLLGEKLFQVTWL-----QKTGFIYD 176 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~----~FgeGit~~g~~LY~ltw~-----~~~v~V~D 176 (346)
..|+++. ++++|+++. +..|..+|.+||+++=+.... .. .....-.+.++.+|+.+.. ++.++.+|
T Consensus 114 ~~~~~~~-~g~v~v~~~---dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D 189 (689)
T 1yiq_A 114 NRGVAVW-KGKVYVGVL---DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYD 189 (689)
T ss_dssp CCCCEEE-TTEEEEECT---TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEE
T ss_pred CCccEEE-CCEEEEEcc---CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEE
Confidence 3577776 589999874 459999999999998777654 11 1111234568999997653 68999999
Q ss_pred CCCCcEEEEEecC--CCc-------------------------------eeEEeeCCCEEEEECCCC-------------
Q 019103 177 QNNLNKLEEFTHQ--MKD-------------------------------GWGLATDGKVLFGSDGSS------------- 210 (346)
Q Consensus 177 ~~tl~~i~ti~~~--~pe-------------------------------GwGLt~Dg~~LyvSdGs~------------- 210 (346)
++|++++-++... .+. ...++++++.+|+..++.
T Consensus 190 ~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~g 269 (689)
T 1yiq_A 190 AETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKG 269 (689)
T ss_dssp TTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCS
T ss_pred CCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCC
Confidence 9999999988741 111 134566789999976543
Q ss_pred ------eEEEEeCCCCcEEEEEEeccC-Ceeee-----eceeeEeeCCE---EEEEecCCCeEEEEeCCCCeEEEEEECC
Q 019103 211 ------MLYQIDPQTLKVIRKDIVRYK-GREVR-----NLNELEFIKGE---VWANVWQTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 211 ------~l~vIDp~T~kvi~~I~V~~~-G~pv~-----~lNELE~~~G~---LyaNv~~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
.|+-+|++|++++=+.+...+ ..... .+-++. .+|+ +++..-....+.++|.+||+++...++.
T Consensus 270 d~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~ 348 (689)
T 1yiq_A 270 DNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIV 348 (689)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESS
T ss_pred CceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECCCCCEecccccc
Confidence 599999999999877776321 00000 111222 2564 3444445789999999999999777654
Q ss_pred chh-----------h----hhh----h-------ccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 276 NLR-----------E----RLV----A-------AGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 276 ~l~-----------~----~~~----~-------~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
... + ... . .+...+....++||||+++.+||.-..++..|+.
T Consensus 349 ~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 416 (689)
T 1yiq_A 349 PQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEH 416 (689)
T ss_dssp CCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEEC
T ss_pred ccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeee
Confidence 310 0 000 0 0011233566799999999999998888887754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.6e-07 Score=79.14 Aligned_cols=180 Identities=14% Similarity=0.106 Sum_probs=113.0
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC-CcEEEEEecC---CCc
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN-LNKLEEFTHQ---MKD 192 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t-l~~i~ti~~~---~pe 192 (346)
++|.......+..|.+||+.+++.......+.......++++++.|+... ++.++++|.++ .+........ ...
T Consensus 11 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 11 RLSTGPGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp -------CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred eEeecCCCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEecccccccccc
Confidence 44443332356799999999999876666665555555555677666654 78999999999 7766554322 124
Q ss_pred eeEEeeCCCEEEEEC----CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecCCC--eEEEEeCC
Q 019103 193 GWGLATDGKVLFGSD----GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQTD--CIARISHE 264 (346)
Q Consensus 193 GwGLt~Dg~~LyvSd----Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~sn--~I~vID~~ 264 (346)
...+++||+.|+.+. +...|+.+|..+.+.. .+.... + .+.+.+. +| +|++.....+ .|..+|..
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~---~---~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTKNL---P---SYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCSSS---S---EEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-EeecCC---C---ccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 467899999887754 3679999998876632 222211 1 2234444 44 5664443344 57788888
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC--CCCcEEEEEE
Q 019103 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK--LWPKLYEINL 319 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK--~Wp~l~ev~l 319 (346)
++++.... . .....+.++|+|+++.|++++. ..-.||.+++
T Consensus 162 ~~~~~~~~---~-----------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 162 SGVETRLT---H-----------GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp TCCEEECC---C-----------SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCcceEcc---c-----------CCCccccceECCCCCEEEEEecCCCCccEEEECC
Confidence 88763211 1 1224688999999999988764 4456776653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.81 E-value=7.6e-07 Score=91.05 Aligned_cols=201 Identities=8% Similarity=-0.055 Sum_probs=136.7
Q ss_pred EEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEeeCCE
Q 019103 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
++.+++. |... ..++.++||+.++.+++ .++.|.+||..+|+.+..+.... ......+..+++.|... ..++.
T Consensus 4 ~~~~~~~~h~~~--v~~i~~sp~~~~la~~~--~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~ 78 (814)
T 3mkq_A 4 DIKKTFSNRSDR--VKGIDFHPTEPWVLTTL--YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-SDDFR 78 (814)
T ss_dssp CCEEEEEEECSC--EEEEEECSSSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEE-ETTSE
T ss_pred ccceeeecCCCc--eEEEEECCCCCEEEEEe--CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEE-eCCCe
Confidence 3444443 4333 47999999997666655 45699999999999988887433 33344444455665555 45899
Q ss_pred EEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCC-cEEEEEEeccCCeeeeeceeeEee--CC
Q 019103 172 GFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTL-KVIRKDIVRYKGREVRNLNELEFI--KG 246 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~-kvi~~I~V~~~G~pv~~lNELE~~--~G 246 (346)
+.++|.++++.+.++... .-....+++|+++|+++..+..|.++|.++. +....+.-.. .++ ..+.+. +|
T Consensus 79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--~~v---~~~~~~p~~~ 153 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HFV---MCVAFNPKDP 153 (814)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCS--SCE---EEEEEETTEE
T ss_pred EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCC--CcE---EEEEEEcCCC
Confidence 999999999999998742 1234557789999998888889999999886 4444333221 222 345665 46
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeC--CCCEEEEecCCCCcEEEE
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDS--NRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~--~~~~LfVTGK~Wp~l~ev 317 (346)
..++....+..|.+.|..+++....+.... ....+.++|+| +++.|++.+ ....+.-.
T Consensus 154 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~ 213 (814)
T 3mkq_A 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQ------------ERGVNYVDYYPLPDKPYMITAS-DDLTIKIW 213 (814)
T ss_dssp EEEEEEETTSEEEEEETTCSSCSEEEECCC------------TTCCCEEEECCSTTCCEEEEEC-TTSEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeEEecCC------------CCCEEEEEEEECCCCCEEEEEe-CCCEEEEE
Confidence 677777678899999999988776664411 12457799998 777666554 33444433
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.5e-07 Score=94.45 Aligned_cols=204 Identities=13% Similarity=0.140 Sum_probs=136.3
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC----eeEEEEEEeCCEEEEEEee-----CCEEEEEEC
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS----YFGEGLTLLGEKLFQVTWL-----QKTGFIYDQ 177 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~----~FgeGit~~g~~LY~ltw~-----~~~v~V~D~ 177 (346)
..|+++. ++++|+++. +..|..+|++||+++=+..+... .....-.+.++++|+.+.. ++.++.+|+
T Consensus 110 ~~~~~~~-~~~v~v~~~---dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~ 185 (668)
T 1kv9_A 110 NRGVALW-GDKVYVGTL---DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDA 185 (668)
T ss_dssp CCCCEEE-BTEEEEECT---TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred ccceEEE-CCEEEEEcC---CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEEC
Confidence 3577886 589999874 35999999999999888876421 1111224568999998764 589999999
Q ss_pred CCCcEEEEEecC--CCce-------------------------------eEEeeCCCEEEEECCCC--------------
Q 019103 178 NNLNKLEEFTHQ--MKDG-------------------------------WGLATDGKVLFGSDGSS-------------- 210 (346)
Q Consensus 178 ~tl~~i~ti~~~--~peG-------------------------------wGLt~Dg~~LyvSdGs~-------------- 210 (346)
+|++++-++... .|.+ ..++++++.+|+..++.
T Consensus 186 ~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd 265 (668)
T 1kv9_A 186 DTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGD 265 (668)
T ss_dssp TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCC
T ss_pred CCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCC
Confidence 999999999752 1211 24566788999965432
Q ss_pred -----eEEEEeCCCCcEEEEEEeccCC-------eeeeeceeeEeeCCE----EEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019103 211 -----MLYQIDPQTLKVIRKDIVRYKG-------REVRNLNELEFIKGE----VWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 211 -----~l~vIDp~T~kvi~~I~V~~~G-------~pv~~lNELE~~~G~----LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
.|+-+|++|++++=+.++..+. .|. .+.+++ .+|+ |++.. ....+.++|.+||+++..+.+
T Consensus 266 ~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~-~~~d~~-~~G~~~~~v~~~~-~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 266 NLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI-TLAELN-IDGKPRKVLMQAP-KNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE-EEEEEE-ETTEEEEEEEECC-TTSEEEEEETTTCCEEEEEES
T ss_pred ceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCc-EEEEec-cCCcEEEEEEEEC-CCCEEEEEECCCCCEeccccc
Confidence 5999999999999888874211 111 122333 2664 44443 578999999999999977765
Q ss_pred Cchh-----------hhhh-h---c--------cCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 275 PNLR-----------ERLV-A---A--------GYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 275 ~~l~-----------~~~~-~---~--------~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
.... +... + . +........++||||+++.+||.-..++..|+.
T Consensus 343 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 408 (668)
T 1kv9_A 343 GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRN 408 (668)
T ss_dssp SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECC
T ss_pred cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeee
Confidence 3210 0000 0 0 001122345699999999999977666666643
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-07 Score=94.73 Aligned_cols=194 Identities=12% Similarity=0.077 Sum_probs=125.4
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC-----CcE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN-----LNK 182 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t-----l~~ 182 (346)
..+.+++|+.++.+.. ..|.+||+++++.......+.......++++|++|+.+ .++.++++|..+ .+.
T Consensus 85 ~~~~~spd~~~~~~~~----~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~--~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 85 FRTLDAGRGLVVLFTQ----GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV--RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp EEEEETTTTEEEEEET----TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE--ETTEEEEEECBCTTSCCCCC
T ss_pred eeEEECCCCeEEEEEC----CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE--ECCeEEEEecCcccccCCCc
Confidence 6899999977666644 59999999999876655544444344566778877664 579999999988 766
Q ss_pred EEEEecCC----------------CceeEEeeCCCEEEEEC---------------------------------CCCeEE
Q 019103 183 LEEFTHQM----------------KDGWGLATDGKVLFGSD---------------------------------GSSMLY 213 (346)
Q Consensus 183 i~ti~~~~----------------peGwGLt~Dg~~LyvSd---------------------------------Gs~~l~ 213 (346)
......+. ..+..++|||++|+.+. +..+|+
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 54333221 25677899999987753 457899
Q ss_pred EEeCCCCcEEEEEEec-cCCeeeeeceeeEee-CC-EEEEEecCC----CeEEEEeCCCCeEEEEEECCchhhhhhhccC
Q 019103 214 QIDPQTLKVIRKDIVR-YKGREVRNLNELEFI-KG-EVWANVWQT----DCIARISHEDGVVLGWVLLPNLRERLVAAGY 286 (346)
Q Consensus 214 vIDp~T~kvi~~I~V~-~~G~pv~~lNELE~~-~G-~LyaNv~~s----n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~ 286 (346)
++|.++.+... +... ..+. .+..+.+. || +|++..... ..|.++|+++|+....+.... ..
T Consensus 239 ~~d~~~~~~~~-~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~--------~~ 306 (706)
T 2z3z_A 239 IYHLATGKTVY-LQTGEPKEK---FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET--------DK 306 (706)
T ss_dssp EEETTTTEEEE-CCCCSCTTC---EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE--------CS
T ss_pred EEECCCCceEe-eccCCCCce---eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc--------CC
Confidence 99999887542 2221 1111 22345554 55 577654332 389999999994333332100 00
Q ss_pred CCCceeeEEEEeC--CCCEEEEecC-CCCcEEEEEE
Q 019103 287 NGIDVLNGIAWDS--NRNRIFVTGK-LWPKLYEINL 319 (346)
Q Consensus 287 ~~~~vlNGIA~d~--~~~~LfVTGK-~Wp~l~ev~l 319 (346)
.-.+..++++|+| +++.+|++++ .+..||.+.+
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~ 342 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT 342 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET
T ss_pred CeECccCCceeecCCCCEEEEEEccCCccEEEEEEC
Confidence 0112346789999 9988877755 3577888763
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-07 Score=95.93 Aligned_cols=193 Identities=11% Similarity=0.085 Sum_probs=122.0
Q ss_pred eeEEEecCCE-EEEEcCCCCCCeEEEEECCCC---cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETG---KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tg---kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
..+.++|||+ |+.++. ..|.+||++++ ++......+.......++++|++|+.+. ++.++++|.++.+..
T Consensus 112 ~~~~~SpDg~~l~~~~~----~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~--~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG----GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR--GRNLWVIDLASGRQM 185 (741)
T ss_dssp CCCEECTTSSEEEEEET----TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE--TTEEEEEETTTTEEE
T ss_pred ceeEECCCCCEEEEEeC----CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe--CCcEEEEecCCCCEE
Confidence 5789999995 444433 59999999999 6543333334444555666778776654 579999999988765
Q ss_pred EEEecCC------------------CceeEEeeCCCEEEEEC--CC-------------------------------CeE
Q 019103 184 EEFTHQM------------------KDGWGLATDGKVLFGSD--GS-------------------------------SML 212 (346)
Q Consensus 184 ~ti~~~~------------------peGwGLt~Dg~~LyvSd--Gs-------------------------------~~l 212 (346)
.....+. ..+..++|||++|+.+. ++ ..|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4433221 25577899999887752 21 189
Q ss_pred EEEeCCC-CcEEEEEEec-cCCeeeeeceeeEeeC-CEEEEEec----CCCeEEEEeCCCCeEEEEEECCchhhhhhhcc
Q 019103 213 YQIDPQT-LKVIRKDIVR-YKGREVRNLNELEFIK-GEVWANVW----QTDCIARISHEDGVVLGWVLLPNLRERLVAAG 285 (346)
Q Consensus 213 ~vIDp~T-~kvi~~I~V~-~~G~pv~~lNELE~~~-G~LyaNv~----~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~ 285 (346)
+++|.++ .+.. .+..+ .+... +..+.+.| .+|++... ....|.++|+++|++...+.-.. .
T Consensus 266 ~~~d~~~~~~~~-~~~~~~~~~~~---~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~------- 333 (741)
T 2ecf_A 266 GVISPAEQAQTQ-WIDLGKEQDIY---LARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-P------- 333 (741)
T ss_dssp EEECSSTTCCCE-EECCCSCSSEE---EEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC-S-------
T ss_pred EEEECCCCCceE-EecCCCCcceE---EEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC-C-------
Confidence 9999988 7754 33332 12222 23344434 46765543 24579999999999876663210 0
Q ss_pred CCCCceeeEEEEeCCCCEEEEecCC-CCcEEEEEE
Q 019103 286 YNGIDVLNGIAWDSNRNRIFVTGKL-WPKLYEINL 319 (346)
Q Consensus 286 ~~~~~vlNGIA~d~~~~~LfVTGK~-Wp~l~ev~l 319 (346)
.-....+.++|+|+++.+|++++. +..||.+.+
T Consensus 334 -~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 334 -TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp -SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred -CcCCcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence 000123578999999976666553 357777763
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-08 Score=93.04 Aligned_cols=189 Identities=8% Similarity=0.012 Sum_probs=122.3
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc---C--CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCc
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM---E--GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l---~--~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
...++|+++++++.++. +..|++||+.+++......+ + .......+.++++.| ++.-.++.+.++|.++.+
T Consensus 97 V~~~~~s~d~~~l~~s~---dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-~sgs~dg~v~iwd~~~~~ 172 (357)
T 4g56_B 97 VTDVAWVSEKGILVASD---SGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQA-VSGGKDFSVKVWDLSQKA 172 (357)
T ss_dssp EEEEEEETTTEEEEEET---TSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEE-EEEETTSCEEEEETTTTE
T ss_pred EEEEEEcCCCCEEEEEC---CCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEE-EEEeCCCeEEEEECCCCc
Confidence 36899999998876643 45899999999875433322 1 223333333344554 444567899999999999
Q ss_pred EEEEEecC--CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCC
Q 019103 182 KLEEFTHQ--MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTD 256 (346)
Q Consensus 182 ~i~ti~~~--~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn 256 (346)
.+.++... .-....++++++.++++- .+++|.++|.++.+.+..+.......+ ++.+.+. ++.++|.--.+.
T Consensus 173 ~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~---v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 173 VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTI---PTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSC---EEEEEECTTSTTEEEEEESSS
T ss_pred EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccc---ccchhhhhcccceEEEeeccc
Confidence 99998753 123445677887666654 477999999999887766655432222 2335554 456777666688
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
.|.+.|..+++.+.++... ....+.|||+|++.++++||-...+|+
T Consensus 250 ~i~~wd~~~~~~~~~~~~~-------------~~~v~~l~~sp~~~~~lasgs~D~~i~ 295 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVH-------------SQNITGLAYSYHSSPFLASISEDCTVA 295 (357)
T ss_dssp CEEEEESSCGGGCEEECCC-------------SSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred ceeEEECCCCcEeEEEecc-------------ceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 8999999999987776321 124588999999988888876655554
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.3e-06 Score=75.07 Aligned_cols=191 Identities=9% Similarity=0.004 Sum_probs=119.9
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--e-CCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--L-GEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~-g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
...+.+++++.++.+.+ .+..|++||+.+++.+........... +.. . ++.++++.-.++.+.++|..+.+.+
T Consensus 89 v~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 164 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTAS--CDKTAKMWDLSSNQAIQIAQHDAPVKT--IHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164 (368)
T ss_dssp EEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEE--EEEEECSSCEEEEEEETTSEEEEECSSCSSCS
T ss_pred EEEEEECcCCCEEEEEc--CCCcEEEEEcCCCCceeeccccCceEE--EEEEeCCCCCEEEEccCCCcEEEEECCCCcEE
Confidence 47999999987766766 456999999999998876665555434 444 3 3455666667899999999999998
Q ss_pred EEEecCCCceeEEeeCCCEEEEECCCCeEEE------------------------------------------------E
Q 019103 184 EEFTHQMKDGWGLATDGKVLFGSDGSSMLYQ------------------------------------------------I 215 (346)
Q Consensus 184 ~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~v------------------------------------------------I 215 (346)
.++... .....+...+..++++..++.+.+ +
T Consensus 165 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 165 MVLQLP-ERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp EEEECS-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred EEEecC-CCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 888764 233334444444444444444444 4
Q ss_pred eCCCC---cEEEEEEeccCC-------eeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhc
Q 019103 216 DPQTL---KVIRKDIVRYKG-------REVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAA 284 (346)
Q Consensus 216 Dp~T~---kvi~~I~V~~~G-------~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~ 284 (346)
|..+. +.+..+...... .....++.+.+. +|...+..-.++.|.+.|..+++.+..+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------- 314 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL--------- 314 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC---------
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC---------
Confidence 44433 112222211100 000013344454 5655555556888999999999988776321
Q ss_pred cCCCCceeeEEEEeCCCCEEEEecCC-CCcEE
Q 019103 285 GYNGIDVLNGIAWDSNRNRIFVTGKL-WPKLY 315 (346)
Q Consensus 285 ~~~~~~vlNGIA~d~~~~~LfVTGK~-Wp~l~ 315 (346)
....+.++|+|+++.|.+++.. |.+.+
T Consensus 315 ----~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 315 ----DQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp ----SSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ----CCCceEEEECCCCCeEEEEecccccccc
Confidence 2256889999999998888653 44443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.5e-06 Score=79.12 Aligned_cols=204 Identities=14% Similarity=0.048 Sum_probs=136.3
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCC
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQK 170 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~ 170 (346)
.++++.-.|....+...+.+++ +.++.+ + .+..|++||+.+|+.......+....-..++. +++.|+... .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~-~~l~~~-~--~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg 156 (401)
T 4aez_A 82 ERVLDAPGIIDDYYLNLLDWSN-LNVVAV-A--LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL-GNG 156 (401)
T ss_dssp SEEEECTTCCCCTTCBCEEECT-TSEEEE-E--ETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE-TTS
T ss_pred ceeeeCCCCcCCceEEEEeecC-CCEEEE-E--CCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC-CCC
Confidence 3444433343334445677765 334433 3 34599999999999988887743222333444 445555544 578
Q ss_pred EEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCC-CcEEEEEEeccCCeeeeeceeeEee-CCEE
Q 019103 171 TGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEFI-KGEV 248 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T-~kvi~~I~V~~~G~pv~~lNELE~~-~G~L 248 (346)
.+.++|..+.+.+.++......-..++.+++.|+....++.|.++|..+ .+.+..+.-.. .+ +..+.+. +|..
T Consensus 157 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~---v~~~~~~~~~~~ 231 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS--SE---VCGLAWRSDGLQ 231 (401)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS--SC---EEEEEECTTSSE
T ss_pred eEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCC--CC---eeEEEEcCCCCE
Confidence 9999999999999998743234456888899988888899999999984 44444444322 22 2345555 5666
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC--CCCcEEEEEE
Q 019103 249 WANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK--LWPKLYEINL 319 (346)
Q Consensus 249 yaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK--~Wp~l~ev~l 319 (346)
++..-.++.|.+.|..+++.+..+.- .......++|+|+++.++++|. ....|+-..+
T Consensus 232 l~s~~~d~~v~iwd~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~ 291 (401)
T 4aez_A 232 LASGGNDNVVQIWDARSSIPKFTKTN-------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNA 291 (401)
T ss_dssp EEEEETTSCEEEEETTCSSEEEEECC-------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEET
T ss_pred EEEEeCCCeEEEccCCCCCccEEecC-------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEEC
Confidence 66666788999999999998877632 1124578999999998998864 5666655544
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.7e-06 Score=81.06 Aligned_cols=205 Identities=14% Similarity=0.036 Sum_probs=133.1
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEE----Eec-cCCCeeEEEEEEe--CCEEEEEE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEA----INQ-MEGSYFGEGLTLL--GEKLFQVT 166 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~----~~~-l~~~~FgeGit~~--g~~LY~lt 166 (346)
+.+....|... ...+.|++++..+.+++ .+..|..||+.+++... .+. -........+.++ +++++++.
T Consensus 141 ~~~~~~~~~~~--v~~~~~sp~~~~l~~~~--~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 216 (450)
T 2vdu_B 141 KLRKRFCFSKR--PNAISIAEDDTTVIIAD--KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS 216 (450)
T ss_dssp EEEEEEECSSC--EEEEEECTTSSEEEEEE--TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE
T ss_pred eeeecccCCCC--ceEEEEcCCCCEEEEEe--CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE
Confidence 34444345333 36999999987665555 34589999999887543 211 1223333334444 14455555
Q ss_pred eeCCEEEEEECCCCcEEEEEecC---CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCee---------
Q 019103 167 WLQKTGFIYDQNNLNKLEEFTHQ---MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGRE--------- 234 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~~---~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~p--------- 234 (346)
-.++.+.++|..+.+.+.++..+ ......++ |++.|+....+++|.++|..+++.+.++.+.....+
T Consensus 217 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (450)
T 2vdu_B 217 DRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAP 295 (450)
T ss_dssp ETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-
T ss_pred cCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccc
Confidence 56799999999999988886532 12344566 899999877889999999999999999886420000
Q ss_pred -----------eeeceeeEee--CCEEEEEecCCCeEEEEeC--CCC---eEEEEEECCchhhhhhhccCCCCceeeEEE
Q 019103 235 -----------VRNLNELEFI--KGEVWANVWQTDCIARISH--EDG---VVLGWVLLPNLRERLVAAGYNGIDVLNGIA 296 (346)
Q Consensus 235 -----------v~~lNELE~~--~G~LyaNv~~sn~I~vID~--~TG---~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA 296 (346)
-..+..+.+. +.+|++.....+.|.+.|. .++ +.+..+... ..+.+++
T Consensus 296 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--------------~~v~~~~ 361 (450)
T 2vdu_B 296 PRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--------------YNVISLS 361 (450)
T ss_dssp ---------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--------------SCEEEEE
T ss_pred ccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--------------CceEEEE
Confidence 0012234343 3478888867899999999 666 777777541 2467899
Q ss_pred EeCCCCEEEEecCCCC---------cEEEEEE
Q 019103 297 WDSNRNRIFVTGKLWP---------KLYEINL 319 (346)
Q Consensus 297 ~d~~~~~LfVTGK~Wp---------~l~ev~l 319 (346)
|+|+ .+|++.-... .+|.++.
T Consensus 362 ~~~~--~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 362 AHND--EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EETT--EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ecCC--cEEEEEecccCCCCCCcceEEEEEEc
Confidence 9993 5666644432 7777653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-06 Score=79.57 Aligned_cols=193 Identities=9% Similarity=-0.039 Sum_probs=124.0
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCc--EEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGK--VEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk--v~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
..+.+++|+.++.+++ .+..|++||+.+++ .+..+.- ........+..+++.|+.. -.++.+.++|.++.+...
T Consensus 12 ~~~~~s~~~~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~ 88 (372)
T 1k8k_C 12 SCHAWNKDRTQIAICP--NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRTWKP 88 (372)
T ss_dssp CEEEECTTSSEEEEEC--SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE-ETTSCEEEEEEETTEEEE
T ss_pred EEEEECCCCCEEEEEe--CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEE-cCCCeEEEEECCCCeeee
Confidence 6899999998776666 45699999999997 5555542 2333343333345555544 467899999999888666
Q ss_pred EEecC----CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEE
Q 019103 185 EFTHQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIA 259 (346)
Q Consensus 185 ti~~~----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~ 259 (346)
.+... ......+++|++.|+++..++.|.++|..+.+.......-..++. ..++.+.+. ++..++..-.++.|.
T Consensus 89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~ 167 (372)
T 1k8k_C 89 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR-STVLSLDWHPNSVLLAAGSCDFKCR 167 (372)
T ss_dssp EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC-SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC-CCeeEEEEcCCCCEEEEEcCCCCEE
Confidence 65431 123455678999999988888999988877663222211111111 123346665 555555555688899
Q ss_pred EEeC------------------CCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 260 RISH------------------EDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 260 vID~------------------~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
+.|. .+++.+..+.- .....+.++|+|+++.|++++ ....|+-.+
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d 230 (372)
T 1k8k_C 168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-------------SCGWVHGVCFSANGSRVAWVS-HDSTVCLAD 230 (372)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-------------CSSCEEEEEECSSSSEEEEEE-TTTEEEEEE
T ss_pred EEEcccccccccccccccccccchhhheEecCC-------------CCCeEEEEEECCCCCEEEEEe-CCCEEEEEE
Confidence 9994 46777666632 122468899999998777665 344444433
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.3e-06 Score=79.44 Aligned_cols=200 Identities=9% Similarity=-0.013 Sum_probs=134.8
Q ss_pred eEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-eeEEEEEEeCCEEEEEEeeCC
Q 019103 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 93 ~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-~FgeGit~~g~~LY~ltw~~~ 170 (346)
.+..+++. |. .-...+.|++|+.++.|++ .+..|++||..+++....+..+.. .....+.+++. ..++...++
T Consensus 54 ~~~~~~l~gH~--~~V~~~~~s~d~~~l~s~s--~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~-~lasg~~d~ 128 (354)
T 2pbi_B 54 MKTRRTLKGHG--NKVLCMDWCKDKRRIVSSS--QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGC-AIACGGLDN 128 (354)
T ss_dssp CCEEEEEECCS--SCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSS-EEEEESTTS
T ss_pred cEEEEEecCCC--CeEEEEEECCCCCEEEEEe--CCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCC-EEEEeeCCC
Confidence 44556664 53 3347999999998888888 566999999999998887776543 22322333344 445566789
Q ss_pred EEEEEECCCC------cEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE
Q 019103 171 TGFIYDQNNL------NKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (346)
Q Consensus 171 ~v~V~D~~tl------~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE 242 (346)
.+.++|.... .....+... .-....+++|++.|+.+.++.+|.++|.++.+.+.++.-.. .++ +-+.
T Consensus 129 ~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~--~~v---~~~~ 203 (354)
T 2pbi_B 129 KCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG--ADV---LCLD 203 (354)
T ss_dssp EEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCE---EEEE
T ss_pred CEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC--CCe---EEEE
Confidence 9999987532 233333321 12344567899999988889999999999999887776432 222 2233
Q ss_pred ee---CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 243 FI---KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 243 ~~---~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
+. +|..++..-.+..|.+-|..+++.+..+... ....++++|+|+++.|+..+ ...++.-
T Consensus 204 ~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-------------~~~v~~v~~~p~~~~l~s~s-~D~~v~l 266 (354)
T 2pbi_B 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-------------ESDVNSVRYYPSGDAFASGS-DDATCRL 266 (354)
T ss_dssp ECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-------------SSCEEEEEECTTSSEEEEEE-TTSCEEE
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-------------CCCeEEEEEeCCCCEEEEEe-CCCeEEE
Confidence 32 4566666666889999999999998877321 12468999999988665544 4454443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-06 Score=82.02 Aligned_cols=184 Identities=9% Similarity=0.052 Sum_probs=124.1
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCC--
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNN-- 179 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~t-- 179 (346)
.....+.+++++.++.+.+ .+..|.+||+ +++.+..+.- .... ..++.. ++.++++.-.++.+.++|..+
T Consensus 164 ~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~-~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 238 (383)
T 3ei3_B 164 YWYCCVDVSVSRQMLATGD--STGRLLLLGL-DGHEIFKEKLHKAKV--THAEFNPRCDWLMATSSVDATVKLWDLRNIK 238 (383)
T ss_dssp CCEEEEEEETTTTEEEEEE--TTSEEEEEET-TSCEEEEEECSSSCE--EEEEECSSCTTEEEEEETTSEEEEEEGGGCC
T ss_pred CCeEEEEECCCCCEEEEEC--CCCCEEEEEC-CCCEEEEeccCCCcE--EEEEECCCCCCEEEEEeCCCEEEEEeCCCCC
Confidence 3457899999998777766 4569999999 5666666543 2333 334443 443666666789999999998
Q ss_pred --CcEEEEEecC-CCceeEEee-CCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC-----CeeeeeceeeEee-CCEEE
Q 019103 180 --LNKLEEFTHQ-MKDGWGLAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK-----GREVRNLNELEFI-KGEVW 249 (346)
Q Consensus 180 --l~~i~ti~~~-~peGwGLt~-Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~-----G~pv~~lNELE~~-~G~Ly 249 (346)
.+.+..+.+. .-....+++ |++.|+++..++.|.++|..+++...++.-... ..++. ..+. ++.+.
T Consensus 239 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~ 314 (383)
T 3ei3_B 239 DKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK----ATWHPMYDLI 314 (383)
T ss_dssp STTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC----CEECSSSSEE
T ss_pred cccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE----EeccCCCCce
Confidence 6777777654 234455778 999999888889999999999888766654221 11111 1222 22222
Q ss_pred EEe---------cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 250 ANV---------WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 250 aNv---------~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
+.. ..++.|.+.|..+++.+..+.... ...+.+.++|+|+++.|..++
T Consensus 315 ~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~-----------~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 315 VAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPN-----------AAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp EEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTT-----------BCSCCCEEEECTTSSEEEEEE
T ss_pred EEEecCCcccccCCCCeEEEEecCCCceeeeecCCC-----------CCceEEEEEEecCccEEEEec
Confidence 222 246789999999999988884311 123667789999998776664
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.76 E-value=4.5e-06 Score=75.31 Aligned_cols=194 Identities=8% Similarity=-0.005 Sum_probs=127.6
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eC-CEEEEEEeeCCEEEEEECCCCcEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LG-EKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g-~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
.....+.+++.++++.+ .+..+.+||............+.......+.. .+ +.+++..-.++.+.++|..+.+.+
T Consensus 131 ~~~~~~~~~~~~l~s~s--~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~ 208 (340)
T 4aow_A 131 VLSVAFSSDNRQIVSGS--RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208 (340)
T ss_dssp EEEEEECTTSSCEEEEE--TTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred eeEEEEeecCccceeec--CCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence 35667777777667766 45699999998776544333322222222333 33 345666677899999999999999
Q ss_pred EEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC-CEEEEEecCCCeEEE
Q 019103 184 EEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK-GEVWANVWQTDCIAR 260 (346)
Q Consensus 184 ~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~-G~LyaNv~~sn~I~v 260 (346)
.++... .-....+++|++.|+.+..++.|.++|..+.+.+..+.... + ++.+.+.. +++.+.. .++.|.+
T Consensus 209 ~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~---v~~~~~~~~~~~~~~~-~d~~i~i 281 (340)
T 4aow_A 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---I---INALCFSPNRYWLCAA-TGPSIKI 281 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---C---EEEEEECSSSSEEEEE-ETTEEEE
T ss_pred eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---e---EEeeecCCCCceeecc-CCCEEEE
Confidence 888642 11345578899999887778899999999999888776543 2 23455554 4554443 4789999
Q ss_pred EeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 261 ISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 261 ID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
.|.+++..+..+.-........ ......+.+||+|+++.|+.++ ....|
T Consensus 282 wd~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~s~dg~~l~sgs-~Dg~v 330 (340)
T 4aow_A 282 WDLEGKIIVDELKQEVISTSSK----AEPPQCTSLAWSADGQTLFAGY-TDNLV 330 (340)
T ss_dssp EETTTTEEEEEECCC-----------CCCCCEEEEEECTTSSEEEEEE-TTSCE
T ss_pred EECCCCeEEEeccccceeeecc----CCCCCEEEEEECCCCCEEEEEe-CCCEE
Confidence 9999999988885422211100 1123567899999998776554 44544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.8e-06 Score=77.62 Aligned_cols=203 Identities=10% Similarity=0.049 Sum_probs=131.2
Q ss_pred EEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-------CEEEEE
Q 019103 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-------EKLFQV 165 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-------~~LY~l 165 (346)
+.+.++. |. .....+.+++++.++.+.+ .+..|++||+....+ ..+.-. ...-..+.... +..+++
T Consensus 98 ~~~~~~~~h~--~~v~~~~~~~~~~~l~s~s--~D~~i~vwd~~~~~~-~~~~~h-~~~v~~~~~~~~~~~~~~~~~l~s 171 (319)
T 3frx_A 98 ETYQRFVGHK--SDVMSVDIDKKASMIISGS--RDKTIKVWTIKGQCL-ATLLGH-NDWVSQVRVVPNEKADDDSVTIIS 171 (319)
T ss_dssp EEEEEEECCS--SCEEEEEECTTSCEEEEEE--TTSCEEEEETTSCEE-EEECCC-SSCEEEEEECCC------CCEEEE
T ss_pred CeeEEEccCC--CcEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeE-EEEecc-CCcEEEEEEccCCCCCCCccEEEE
Confidence 3455554 43 2347899999998888877 556999999975543 333211 11122333322 224555
Q ss_pred EeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe
Q 019103 166 TWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF 243 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~ 243 (346)
.-.++.+.++|.++.+...++.-. .-....++|||+.|..+..+++|.++|..+.+.+.++.... + ++.+.+
T Consensus 172 ~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~---v~~~~~ 245 (319)
T 3frx_A 172 AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD---E---VFSLAF 245 (319)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS---C---EEEEEE
T ss_pred EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---c---EEEEEE
Confidence 667899999999999988887532 12445678899998887778999999999999888876532 2 234555
Q ss_pred e-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 244 I-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 244 ~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
. +|+..+.. ..+.|.+.|.+++..+..+.. .+...... .......+||+|+++.|+..+ ....|+
T Consensus 246 sp~~~~la~~-~~~~i~v~~~~~~~~~~~~~~-~~~~~~~~----~~~~v~~~~~spdg~~l~sg~-~Dg~i~ 311 (319)
T 3frx_A 246 SPNRYWLAAA-TATGIKVFSLDPQYLVDDLRP-EFAGYSKA----AEPHAVSLAWSADGQTLFAGY-TDNVIR 311 (319)
T ss_dssp CSSSSEEEEE-ETTEEEEEEETTEEEEEEECC-CCTTCCGG----GCCCEEEEEECTTSSEEEEEE-TTSCEE
T ss_pred cCCCCEEEEE-cCCCcEEEEeCcCeeeeccCc-cccccccC----cCcceeEEEECCCCCEEEEee-cCceEE
Confidence 5 45544443 366789999999988877743 11110000 112356899999999876554 444443
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-07 Score=87.46 Aligned_cols=196 Identities=8% Similarity=0.031 Sum_probs=131.6
Q ss_pred ceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCc------EEEEe----ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEE
Q 019103 107 TQGLLYAEN-DTLFESTGLYGRSSVRRVALETGK------VEAIN----QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIY 175 (346)
Q Consensus 107 TqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgk------v~~~~----~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~ 175 (346)
...+.|+++ +.++.+.+ .+..|++||+.+++ ..... ..........+..+++.++++.-.++.+.++
T Consensus 116 v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 116 VKTVKFNAKQDNVLASGG--NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193 (416)
T ss_dssp CCEEEECSSSTTBEEEEC--SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE
T ss_pred eEEEEEcCCCCCEEEEEc--CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE
Confidence 378999987 67777766 45699999999986 22222 1122333333333445667777778999999
Q ss_pred ECCCCcEEEEEecC--------CCceeEEeeCCC-EEEEECCCC---eEEEEeCCCC-cEEEEEEeccCCeeeeeceeeE
Q 019103 176 DQNNLNKLEEFTHQ--------MKDGWGLATDGK-VLFGSDGSS---MLYQIDPQTL-KVIRKDIVRYKGREVRNLNELE 242 (346)
Q Consensus 176 D~~tl~~i~ti~~~--------~peGwGLt~Dg~-~LyvSdGs~---~l~vIDp~T~-kvi~~I~V~~~G~pv~~lNELE 242 (346)
|.++.+.+.++... ......+++|+. .+++...++ .|.++|.++. +.+..+..+ +..+ ++.+.
T Consensus 194 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~-~~~~---v~~~~ 269 (416)
T 2pm9_A 194 DLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG-HQKG---ILSLD 269 (416)
T ss_dssp ETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC-CSSC---EEEEE
T ss_pred ECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC-ccCc---eeEEE
Confidence 99999999988753 123445678875 455544454 9999999886 333333201 1122 23466
Q ss_pred ee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 243 FI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 243 ~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+. ++.+++..-.++.|.+.|.++++.+..+... ....+.++|+|++..+++++-....|.--++.
T Consensus 270 ~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 270 WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-------------GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-------------SSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-------------CCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 64 5666666667889999999999999888541 12357799999997778888878877666654
Q ss_pred e
Q 019103 321 E 321 (346)
Q Consensus 321 ~ 321 (346)
.
T Consensus 337 ~ 337 (416)
T 2pm9_A 337 N 337 (416)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-06 Score=82.31 Aligned_cols=200 Identities=11% Similarity=0.047 Sum_probs=129.1
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC--eeEEEEEE----------------------eCC
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS--YFGEGLTL----------------------LGE 160 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~--~FgeGit~----------------------~g~ 160 (346)
.....+.+++++.++.+++ .+..|++||+.+++.+..+..... ..-..++. .++
T Consensus 182 ~~v~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSAS--LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 259 (420)
T ss_dssp SCEEEEEEETTTTEEEEEE--TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred CcEEEEEEcCCCCEEEEEc--CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence 3347999999997777766 456999999999998888764211 11111111 124
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEEEEecCC---CceeEEeeCCC-EEEEECCCCeEEEEeCCCCcE-EEEEEeccCCeee
Q 019103 161 KLFQVTWLQKTGFIYDQNNLNKLEEFTHQM---KDGWGLATDGK-VLFGSDGSSMLYQIDPQTLKV-IRKDIVRYKGREV 235 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~---peGwGLt~Dg~-~LyvSdGs~~l~vIDp~T~kv-i~~I~V~~~G~pv 235 (346)
.+.++.-.++.+.++|..+.+.+.++..+. -....+++|++ .|+++..++.|.++|..+.+. +.++... ++.++
T Consensus 260 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v 338 (420)
T 3vl1_A 260 KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN-EGTPI 338 (420)
T ss_dssp EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES-TTSCE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc-CCCCc
Confidence 455555668899999999999988886531 23445678888 777777789999999998754 5555542 22343
Q ss_pred eeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC---EEEEecCCCC
Q 019103 236 RNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN---RIFVTGKLWP 312 (346)
Q Consensus 236 ~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~---~LfVTGK~Wp 312 (346)
. -+.+.+|.+++..-.++.|.+-|..+.+-...+........+ .........++|+|+++ +++.+|.. +
T Consensus 339 ~---~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~~g~l~a~g~~-g 410 (420)
T 3vl1_A 339 N---NVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFL----VSNDDAVSQFCYVSDDESNGEVLEVGKN-N 410 (420)
T ss_dssp E---EEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEE----CCSSCCCCEEEEECCSSSSCEEEEEETT-T
T ss_pred e---EEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEE----ccCCcceEEEEEccCCCCcceEEEEcCC-c
Confidence 3 355668887777777788888887764221111100000000 01233567899999999 88888864 4
Q ss_pred cEE
Q 019103 313 KLY 315 (346)
Q Consensus 313 ~l~ 315 (346)
.+.
T Consensus 411 ~~~ 413 (420)
T 3vl1_A 411 FCA 413 (420)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-06 Score=81.42 Aligned_cols=210 Identities=15% Similarity=0.164 Sum_probs=125.1
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEE--EEecc--CCCeeEEEEEEeC-----CEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVE--AINQM--EGSYFGEGLTLLG-----EKL 162 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~--~~~~l--~~~~FgeGit~~g-----~~L 162 (346)
+++++.+- -..| .|+++++||+||++.- + .+|.++| +|+.. ..+++ .......||+++. +.|
T Consensus 22 ~~~~va~~--l~~P--~~ia~~pdG~l~V~e~--~-g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 22 RVEEVVGG--LEVP--WALAFLPDGGMLIAER--P-GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp CEEEEECC--CSCE--EEEEECTTSCEEEEET--T-TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEE
T ss_pred EEEEEECC--CCCc--eEEEEcCCCeEEEEeC--C-CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEE
Confidence 55665541 1234 6999999999999964 2 5999999 55532 22221 1223356788875 499
Q ss_pred EEEEeeC-----CEEEEEECCCC-----c-EEEEEec--C---CCceeEEeeCCCEEEEECCC--------------CeE
Q 019103 163 FQVTWLQ-----KTGFIYDQNNL-----N-KLEEFTH--Q---MKDGWGLATDGKVLFGSDGS--------------SML 212 (346)
Q Consensus 163 Y~ltw~~-----~~v~V~D~~tl-----~-~i~ti~~--~---~peGwGLt~Dg~~LyvSdGs--------------~~l 212 (346)
|++.... +.|..++.+.. + ++..++. + .+.+..+.+|| +||+++|+ .+|
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I 171 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKI 171 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEE
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEE
Confidence 9998765 78999997743 2 2333552 1 35677788898 79999863 478
Q ss_pred EEEeCCCCcE-------------EEEEEeccCCeeeeeceeeEee--CCEEEEEecCCCe--------EEEEeCCCCeEE
Q 019103 213 YQIDPQTLKV-------------IRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDC--------IARISHEDGVVL 269 (346)
Q Consensus 213 ~vIDp~T~kv-------------i~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~--------I~vID~~TG~Vv 269 (346)
..||+.. ++ ...+..+ +.+.+.+.+. +|+||++....+. |.+|.+.. --
T Consensus 172 ~ri~~dG-~~p~~npf~~~~~~~~~i~a~G-----~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~--ny 243 (352)
T 2ism_A 172 LRLTPEG-EPAPGNPFLGRRGARPEVYSLG-----HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGG--NY 243 (352)
T ss_dssp EEECTTS-SBCTTCTTTTCTTSCTTEEEEC-----CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTC--BC
T ss_pred EEEcCCC-CCCCCCcccCCCCCCccEEEEc-----CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCC--cC
Confidence 8888764 11 0011111 2344557666 5799987766554 66665422 00
Q ss_pred EEE------ECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeecc
Q 019103 270 GWV------LLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMK 323 (346)
Q Consensus 270 ~~I------~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~ 323 (346)
+|= ..++..+ +...++....|.|||+. +..+||+.-.-.+|+.|++..-.
T Consensus 244 Gwp~~~g~~~~~~~~~--p~~~~~~~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~ 299 (352)
T 2ism_A 244 GWPRVVGRGNDPRYRD--PLYFWPQGFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGER 299 (352)
T ss_dssp CTTTCCSCCCCTTSCC--CSEECTTCCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEET
T ss_pred CCCcccCCCCCCCCcC--CeEecCCCCCCcceEEE--CCEEEEEECCCCEEEEEEECCCC
Confidence 000 0000000 00001223468999994 45899998888899999987543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.9e-07 Score=80.30 Aligned_cols=205 Identities=8% Similarity=0.012 Sum_probs=132.4
Q ss_pred EEEEecCCCCcceeEEEecC---CEEEEEcCCCCCCeEEEEECCCCc-EEEEeccCCCeeEEEEE--------EeCCEEE
Q 019103 96 VNEFPHDPRAFTQGLLYAEN---DTLFESTGLYGRSSVRRVALETGK-VEAINQMEGSYFGEGLT--------LLGEKLF 163 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d---~~LyeStGlyg~s~V~~iDl~Tgk-v~~~~~l~~~~FgeGit--------~~g~~LY 163 (346)
+..+.|... ...+.|+++ +.++.+.+ .+..|++||+.+++ .+..+.-.... -..+. .+++.|+
T Consensus 59 ~~~~~~~~~--v~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 59 LREIEKAKP--IKCGTFGATSLQQRYLATGD--FGGNLHIWNLEAPEMPVYSVKGHKEI-INAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp EEEEEESSC--EEEEECTTCCTTTCCEEEEE--TTSCEEEECTTSCSSCSEEECCCSSC-EEEEEEESGGGCC-CCCEEE
T ss_pred eeeecccCc--EEEEEEcCCCCCCceEEEec--CCCeEEEEeCCCCCccEEEEEecccc-eEEEeeccccccCCCccEEE
Confidence 444566322 378999987 56666656 45699999999987 55555432221 12232 2344444
Q ss_pred EEEeeCCEEEEEECCCCc-EEEEEecC----CCceeEEe------eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCC
Q 019103 164 QVTWLQKTGFIYDQNNLN-KLEEFTHQ----MKDGWGLA------TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 164 ~ltw~~~~v~V~D~~tl~-~i~ti~~~----~peGwGLt------~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
+.-.++.+.++|..+.+ .+.++... ...-+.+. +|++.|+++..++.|.++|.++.+........
T Consensus 134 -~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--- 209 (357)
T 3i2n_A 134 -TGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIK--- 209 (357)
T ss_dssp -EEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECS---
T ss_pred -EEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCC---
Confidence 44567899999999887 67777532 11334444 78999998877889999999999875443332
Q ss_pred eeeeeceeeEee----CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 233 REVRNLNELEFI----KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 233 ~pv~~lNELE~~----~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
.+ ++.+.+. ++..++....++.|.+.|..+++.+..+....+. ......+.++|+|+++.+++||
T Consensus 210 ~~---v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 210 NG---VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEK--------AHKSTVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp SC---EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEE--------CCSSCEEEEEEETTEEEEEEEE
T ss_pred Cc---eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccC--------CCcCCEEEEEECCCCCcEEEEE
Confidence 12 2346665 5555555556889999999888765554321111 1123578899999998788888
Q ss_pred CCCCcEEEEEEe
Q 019103 309 KLWPKLYEINLR 320 (346)
Q Consensus 309 K~Wp~l~ev~l~ 320 (346)
-....|+--++.
T Consensus 279 ~~dg~i~iwd~~ 290 (357)
T 3i2n_A 279 GGAGGLHLWKYE 290 (357)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCcEEEeecC
Confidence 888877666654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-06 Score=80.56 Aligned_cols=205 Identities=13% Similarity=0.114 Sum_probs=128.9
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc--CCCeeEEEEEE--eCCEEEEEEe
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM--EGSYFGEGLTL--LGEKLFQVTW 167 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l--~~~~FgeGit~--~g~~LY~ltw 167 (346)
.++.+.+++.-+......++|+|||.++.+++ .+..|++||+.+++......+ +...--..++. +++.|. +.-
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~--~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~s 80 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCG--GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA-SAS 80 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEE--TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEE-EEE
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEc--CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEE-EEE
Confidence 46788888632332346899999999888888 567999999999875544322 21111233444 445444 444
Q ss_pred eCCEEEEEECCCC--cEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEec-cCCeeeeeceeeE
Q 019103 168 LQKTGFIYDQNNL--NKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR-YKGREVRNLNELE 242 (346)
Q Consensus 168 ~~~~v~V~D~~tl--~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~-~~G~pv~~lNELE 242 (346)
.++.+.++|.++. +.+.++.- . .-....++|||+.|+....+++|.++|..+.+....+.+- .+..+ ++.+.
T Consensus 81 ~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~---v~~~~ 157 (345)
T 3fm0_A 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD---VKHVV 157 (345)
T ss_dssp TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC---EEEEE
T ss_pred CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC---eEEEE
Confidence 5788888887655 44556642 1 1234557789999988777889999998776544433332 22222 23455
Q ss_pred ee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 243 FI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 243 ~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
+. +|.++|..-.++.|.+.|..+++.+....+.+ -....+.++|+|+++.|...+ ...+|
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~-----------h~~~v~~l~~sp~g~~l~s~s-~D~~v 218 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEG-----------HESTVWSLAFDPSGQRLASCS-DDRTV 218 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECC-----------CSSCEEEEEECTTSSEEEEEE-TTSCE
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecC-----------CCCceEEEEECCCCCEEEEEe-CCCeE
Confidence 54 56666665568889999998886543332211 123468899999998766554 33443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-06 Score=86.14 Aligned_cols=134 Identities=14% Similarity=0.193 Sum_probs=88.3
Q ss_pred eCCEEEEEECCC--CcEEEEEec---------CCCceeEEee--CCC-EEEEECC---CC--eEEEEeCCCCcEEEEEEe
Q 019103 168 LQKTGFIYDQNN--LNKLEEFTH---------QMKDGWGLAT--DGK-VLFGSDG---SS--MLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 168 ~~~~v~V~D~~t--l~~i~ti~~---------~~peGwGLt~--Dg~-~LyvSdG---s~--~l~vIDp~T~kvi~~I~V 228 (346)
..+.++++|+++ .+. .++.. ..|.|..+.. ||. +|||.|- .+ .|+.+|+++.....--.+
T Consensus 81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~ 159 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI 159 (355)
T ss_dssp -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence 578888999873 222 22221 1456666655 454 7999873 23 466677765543322222
Q ss_pred ccCCeeeeeceeeEee-CCEEEEEe--cCC---------------CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCc
Q 019103 229 RYKGREVRNLNELEFI-KGEVWANV--WQT---------------DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGID 290 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~-~G~LyaNv--~~s---------------n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~ 290 (346)
.|.++..+|.+.++ +|.+|+++ |.+ ..|+++|+.+-+++ . .+ ..
T Consensus 160 --~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~--~--~~------------l~ 221 (355)
T 3sre_A 160 --RHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV--A--EG------------FD 221 (355)
T ss_dssp --CCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEE--E--EE------------ES
T ss_pred --ccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEe--e--cC------------Cc
Confidence 45788889998777 68999985 433 46889998532221 1 12 23
Q ss_pred eeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 291 VLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 291 vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
.|||||++||+++|||+.-.-.+|+...+.
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 789999999999999998888888888775
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-05 Score=74.20 Aligned_cols=195 Identities=12% Similarity=0.065 Sum_probs=129.0
Q ss_pred EEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeC-CEEEEEEeeCCEEE
Q 019103 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLG-EKLFQVTWLQKTGF 173 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g-~~LY~ltw~~~~v~ 173 (346)
+.++.. .......+.|++|+.++.+++ .+..|++||+.+|+.+..+.-. ..... ++... +.+.++.-.++.+.
T Consensus 58 ~~~~~~-h~~~v~~~~~s~dg~~l~s~s--~D~~v~~wd~~~~~~~~~~~~h~~~v~~--~~~~~~~~~l~s~s~D~~i~ 132 (319)
T 3frx_A 58 VRSFKG-HSHIVQDCTLTADGAYALSAS--WDKTLRLWDVATGETYQRFVGHKSDVMS--VDIDKKASMIISGSRDKTIK 132 (319)
T ss_dssp EEEEEC-CSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEE--EEECTTSCEEEEEETTSCEE
T ss_pred ceEEeC-CcccEEEEEECCCCCEEEEEe--CCCEEEEEECCCCCeeEEEccCCCcEEE--EEEcCCCCEEEEEeCCCeEE
Confidence 444542 233447899999998888877 5669999999999987776532 33333 44432 33444555678999
Q ss_pred EEECCCCcEEEEEec-C-CCceeEEee------CCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-
Q 019103 174 IYDQNNLNKLEEFTH-Q-MKDGWGLAT------DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI- 244 (346)
Q Consensus 174 V~D~~tl~~i~ti~~-~-~peGwGLt~------Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~- 244 (346)
++|.+. +.+.++.. . .-....+.+ |+..++.+..++.|.++|.++++...++.-.. .+ ++.+.+.
T Consensus 133 vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~--~~---v~~~~~sp 206 (319)
T 3frx_A 133 VWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN--SN---INTLTASP 206 (319)
T ss_dssp EEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC--SC---EEEEEECT
T ss_pred EEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC--Cc---EEEEEEcC
Confidence 999864 44444432 1 112223444 34466666668899999999988776554321 22 3345555
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 245 KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
+|+..|..-.++.|.+-|..+++.+.++... +..+.+||+|++..|..+...--++|
T Consensus 207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~sp~~~~la~~~~~~i~v~ 263 (319)
T 3frx_A 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--------------DEVFSLAFSPNRYWLAAATATGIKVF 263 (319)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEEEEEEECC--------------SCEEEEEECSSSSEEEEEETTEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCC--------------CcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 6777777777899999999999998888541 13578999999998887765433333
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.7e-07 Score=82.36 Aligned_cols=191 Identities=15% Similarity=0.091 Sum_probs=108.0
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEE-eCCEEEEEEee-----CCEEEEEECCCCcEEEEEecCCC-c---eeEE
Q 019103 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQVTWL-----QKTGFIYDQNNLNKLEEFTHQMK-D---GWGL 196 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~-~g~~LY~ltw~-----~~~v~V~D~~tl~~i~ti~~~~p-e---GwGL 196 (346)
...|.++|+++|+......-+.......+++ +|++|+.+... ...++++|.++.+. ..+..... + ...+
T Consensus 167 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~ 245 (388)
T 3pe7_A 167 CCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFW 245 (388)
T ss_dssp CEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEE
T ss_pred cceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceE
Confidence 4789999999998765554444444445666 67766554433 45899999876543 23322211 1 2357
Q ss_pred eeCCCEE-EEEC--CCC--eEEEEeCCCCcEEEEEEeccCCeeeeece--eeEeeCCEEEEEe--------cCCCeEEEE
Q 019103 197 ATDGKVL-FGSD--GSS--MLYQIDPQTLKVIRKDIVRYKGREVRNLN--ELEFIKGEVWANV--------WQTDCIARI 261 (346)
Q Consensus 197 t~Dg~~L-yvSd--Gs~--~l~vIDp~T~kvi~~I~V~~~G~pv~~lN--ELE~~~G~LyaNv--------~~sn~I~vI 261 (346)
+|||++| |+++ +.. .|+++|+++.+...-.............. .+..++.+|++.. .....|.++
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~ 325 (388)
T 3pe7_A 246 VPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325 (388)
T ss_dssp CTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred CCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence 8999976 7676 333 49999999988643222211000000011 1233344555433 445689999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec--CCCCcEEEEEEee
Q 019103 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG--KLWPKLYEINLRE 321 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG--K~Wp~l~ev~l~~ 321 (346)
|+++|++.....-..-...+.. ........++|+||+++|+.+. ...+.||.+.|.+
T Consensus 326 d~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 326 NMKNGTQHRVARHDTSWKVFEG---DRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp ETTTTEEEEEEECCCCCCCBTT---BSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred eccCCceEEeccccCccccccc---ccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 9999987443322110000000 0001235689999999988765 3578899998753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.9e-06 Score=86.79 Aligned_cols=203 Identities=11% Similarity=0.019 Sum_probs=136.6
Q ss_pred EEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCC-cEEEEeccCCCeeEEEEEEeC--CEEEEEEeeC
Q 019103 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG-KVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQ 169 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg-kv~~~~~l~~~~FgeGit~~g--~~LY~ltw~~ 169 (346)
+.+.++. |. .....+.+++++..+.+++ .+..|++||+.++ +......-... ....++... +..+++.-.+
T Consensus 88 ~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~-~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 88 EKVVDFEAHP--DYIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTFEGHEH-FVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp CEEEEEECCS--SCEEEEEECSSSSEEEEEE--TTSEEEEEEGGGTSEEEEEEECCSS-CEEEEEEETTEEEEEEEEETT
T ss_pred cEEEEEecCC--CCEEEEEEeCCCCEEEEEc--CCCEEEEEECCCCceEEEEEcCCCC-cEEEEEEEcCCCCEEEEEeCC
Confidence 3455555 42 3347999999997666655 4569999999998 44444432222 234455543 4566666778
Q ss_pred CEEEEEECCCCcEEEEEecCC---CceeEEee--CCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019103 170 KTGFIYDQNNLNKLEEFTHQM---KDGWGLAT--DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~~~~---peGwGLt~--Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
+.+.++|..+.+...++.... .....+++ |+..|+++..++.|.++|..+.+.+.++.... .++ ..+.+.
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v---~~~~~~ 237 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNV---SFAVFH 237 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCE---EEEEEC
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCE---EEEEEc
Confidence 999999999888888776531 23344566 88999998888999999999999887776432 222 234454
Q ss_pred -CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 245 -KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 245 -~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+|.+++....++.|.+.|+.+++.+..+... ......++++|+++.++++....+.+..+++
T Consensus 238 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-------------LERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp SSSSEEEEEETTSCEEEEETTTCSEEEEECCS-------------SSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-------------CCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 5655666656889999999999998888541 1245678888888765444334555555543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=9.1e-07 Score=89.86 Aligned_cols=174 Identities=14% Similarity=0.054 Sum_probs=106.6
Q ss_pred CCCeEEEEECCCCcEEEEecc-CCCee--EEEEEEeCCEEEEEEeeC----CEEEEEECCCCcEEEEEecC-C------C
Q 019103 126 GRSSVRRVALETGKVEAINQM-EGSYF--GEGLTLLGEKLFQVTWLQ----KTGFIYDQNNLNKLEEFTHQ-M------K 191 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l-~~~~F--geGit~~g~~LY~ltw~~----~~v~V~D~~tl~~i~ti~~~-~------p 191 (346)
+...|.+||+++++....... +.... ....+++|+.|+...... ..++++|.++++...++..+ . .
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 446899999999986544322 12222 233344677788765433 38999999998544444321 1 1
Q ss_pred ceeEEee--CCCEEEEEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCC----eEEEE
Q 019103 192 DGWGLAT--DGKVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTD----CIARI 261 (346)
Q Consensus 192 eGwGLt~--Dg~~LyvSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn----~I~vI 261 (346)
....+++ ||+.||+++ |...|+.+|.. .+.+..+.-+. .++.. .+.+. +++||+.....+ .|.++
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-~~~~~~l~~~~--~~v~~--~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-GRLIRQVTKGE--WEVTN--FAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETT-SCEEEECCCSS--SCEEE--EEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECC-CCEEEecCCCC--eEEEe--eeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 3457899 999999886 46688888854 44444443322 22211 12333 447887665554 89999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC---CcEEEEEE
Q 019103 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW---PKLYEINL 319 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W---p~l~ev~l 319 (346)
|.+++++ ..+.- ....+.++|+|+++.+.++.... +.+|.+++
T Consensus 388 d~~~~~~-~~l~~--------------~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~ 433 (706)
T 2z3z_A 388 DIKGGKT-KDLTP--------------ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNI 433 (706)
T ss_dssp ETTCCCC-EESCC--------------SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEES
T ss_pred EcCCCCc-eeccC--------------CCceEEEEECCCCCEEEEEecCCCCCcEEEEEEC
Confidence 9999873 22210 11357899999999988775544 33555543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-06 Score=80.97 Aligned_cols=163 Identities=13% Similarity=0.145 Sum_probs=106.5
Q ss_pred cCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEEecC---CCceeEEeeCCCEEEEE-CCCCeEEEEeCCC
Q 019103 146 MEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWGLATDGKVLFGS-DGSSMLYQIDPQT 219 (346)
Q Consensus 146 l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---~peGwGLt~Dg~~LyvS-dGs~~l~vIDp~T 219 (346)
+..+++| ++.+ +++||++++.++.++.+|++ ++++++++.+ -+||.++..+|. +|++ ++.+.|++++..+
T Consensus 25 ~~~~lSG--la~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 25 ITNNISS--LTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQ-FVISDERDYAIYVISLTP 100 (255)
T ss_dssp CCSCEEE--EEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTE-EEEEETTTTEEEEEEECT
T ss_pred cccCcce--eEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCE-EEEEECCCCcEEEEEcCC
Confidence 3356655 5665 68999999999999999998 9999999873 457666665664 5565 5788999987544
Q ss_pred Cc---EEEEEEeccCCeeeee-ceeeEee--CCEEEEEecCCC-eEEEEe--CCCCeEEEEEECCchhhhhhhccCCCCc
Q 019103 220 LK---VIRKDIVRYKGREVRN-LNELEFI--KGEVWANVWQTD-CIARIS--HEDGVVLGWVLLPNLRERLVAAGYNGID 290 (346)
Q Consensus 220 ~k---vi~~I~V~~~G~pv~~-lNELE~~--~G~LyaNv~~sn-~I~vID--~~TG~Vv~~I~l~~l~~~~~~~~~~~~~ 290 (346)
.. ++.++...-...+-.. +.-|.|. +++||+...... .|..++ +.+.. +..++-..+... ....
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~-l~i~~~~~~~~~------~~~~ 173 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE-LHISKDKALQRQ------FTLD 173 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC-CEEEECHHHHHT------CCSS
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc-eeeecchhhccc------cccC
Confidence 33 3444443210011000 1125565 459999888777 799998 22221 122221111111 1123
Q ss_pred eeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 291 VLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 291 vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
-+-||||||..++|||...-...|.++.+
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~ 202 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTL 202 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcC
Confidence 47899999999999999999999999876
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.4e-06 Score=84.38 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=111.3
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEE
Q 019103 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLF 204 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~Ly 204 (346)
..|.++|++++++.....-........++++|++|+.+.+.+ ..++++|.++.+...-.... ......++|||++|+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la 238 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 238 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEE
Confidence 699999998765433333344455555566778888777654 69999999998876433332 224556889999887
Q ss_pred E-E--CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecC--CCeEEEEeCCCCeEEEEEECCch
Q 019103 205 G-S--DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ--TDCIARISHEDGVVLGWVLLPNL 277 (346)
Q Consensus 205 v-S--dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~--sn~I~vID~~TG~Vv~~I~l~~l 277 (346)
+ + ||...|+++|.++.+.. .+..++. ....+.+. || +|+..... ...|.++|.+++++. .+..
T Consensus 239 ~~~~~~g~~~i~~~d~~~~~~~---~l~~~~~---~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~--- 308 (415)
T 2hqs_A 239 FALSKTGSLNLYVMDLASGQIR---QVTDGRS---NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW--- 308 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCEE---ECCCCSS---CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC---
T ss_pred EEEecCCCceEEEEECCCCCEE---eCcCCCC---cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec---
Confidence 4 4 35678999999998763 2222211 22345554 55 56655432 237999999999853 2211
Q ss_pred hhhhhhccCCCCceeeEEEEeCCCCEEEEecCC--CCcEEEEEE
Q 019103 278 RERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL--WPKLYEINL 319 (346)
Q Consensus 278 ~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~--Wp~l~ev~l 319 (346)
.......++|+|+++.|++++.. ...|+.+.+
T Consensus 309 ----------~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~ 342 (415)
T 2hqs_A 309 ----------EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 342 (415)
T ss_dssp ----------SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEET
T ss_pred ----------CCCcccCeEECCCCCEEEEEECcCCceEEEEEEC
Confidence 11245679999999999988764 346666654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.68 E-value=5.3e-06 Score=81.24 Aligned_cols=189 Identities=12% Similarity=0.164 Sum_probs=125.2
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEE
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~ 173 (346)
.+.++..... -..+++|++|++++.+.+ .+..|++||. +++.+....- .....+..+.++++. .++.-.++.+.
T Consensus 377 ~~~~~~~~~~-~v~~~~~s~dg~~l~~~~--~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~d~~v~ 451 (577)
T 2ymu_A 377 LLQTLTGHSS-SVRGVAFSPDGQTIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQT-IASASDDKTVK 451 (577)
T ss_dssp EEEEEECCSS-CEEEEEECTTSSCEEEEE--TTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEE
T ss_pred EEEEecCCCC-CeEEEEECCCCCEEEEEe--CCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCE-EEEEcCCCEEE
Confidence 3444442223 347999999998777766 4569999995 5666666543 333333333334444 44455678999
Q ss_pred EEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEE
Q 019103 174 IYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWA 250 (346)
Q Consensus 174 V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~Lya 250 (346)
++|. +.+.+.++... .-....++||++.|.++..+..|.++|. +.+.+.++.-.. .+ ++.+.+. ||+..|
T Consensus 452 ~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~--~~---v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 452 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SS---VRGVAFSPDGQTIA 524 (577)
T ss_dssp EEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCS--SC---EEEEEECTTSSCEE
T ss_pred EEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCC--CC---EEEEEEcCCCCEEE
Confidence 9995 56777777532 2245567899999998877889999995 677777665422 22 3346665 676666
Q ss_pred EecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 251 NVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 251 Nv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
+.-.+..|.+-|. +|+.+.++.-. .....++||+|+++.|+.+|.
T Consensus 525 s~~~dg~v~lwd~-~~~~~~~~~~h-------------~~~v~~~~fs~dg~~l~s~~~ 569 (577)
T 2ymu_A 525 SASDDKTVKLWNR-NGQLLQTLTGH-------------SSSVWGVAFSPDGQTIASASS 569 (577)
T ss_dssp EEETTSEEEEECT-TSCEEEEEECC-------------SSCEEEEEECTTSSCEEEEET
T ss_pred EEECcCEEEEEeC-CCCEEEEEcCC-------------CCCEEEEEEcCCCCEEEEEeC
Confidence 6666778999994 78888777421 124578999999988766554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-06 Score=78.44 Aligned_cols=221 Identities=10% Similarity=0.070 Sum_probs=138.9
Q ss_pred eeeEEEEEEecCCCCcceeEEEecC---C-E-EEEEcCCCCCCeEEEEECCCCcEEEEec------cCCCeeEEEEEEeC
Q 019103 91 YTIQVVNEFPHDPRAFTQGLLYAEN---D-T-LFESTGLYGRSSVRRVALETGKVEAINQ------MEGSYFGEGLTLLG 159 (346)
Q Consensus 91 ~t~~Vv~t~phd~~~FTqGL~~~~d---~-~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~------l~~~~FgeGit~~g 159 (346)
+.++.+..+..+...-...+.|+|+ + . ++.+++ ++.|++||..+++.+..+. .........+..++
T Consensus 5 ~~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~---~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 5 YSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVG---SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp CCCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEE---TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECT
T ss_pred eEEEEEEEeecCCCCceEEEEEecccCCCCceEEEECC---CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCC
Confidence 4577777776444555579999973 3 3 554443 3499999999988766553 12345555555553
Q ss_pred ---CEEEEEEeeCCEEEEEECCCCcEEEEEec-C-CCceeEEee-CCCEEEEECCCCeEEEEeCCCCcEEEEEEe-ccCC
Q 019103 160 ---EKLFQVTWLQKTGFIYDQNNLNKLEEFTH-Q-MKDGWGLAT-DGKVLFGSDGSSMLYQIDPQTLKVIRKDIV-RYKG 232 (346)
Q Consensus 160 ---~~LY~ltw~~~~v~V~D~~tl~~i~ti~~-~-~peGwGLt~-Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V-~~~G 232 (346)
+.++++...++.+.++|..+.+.+.++.. . .-....+++ +++.|+....++.|.++|..+.+.+..+.. ..+.
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence 35666667789999999999999999973 2 224445677 788888877788999999999988777642 1122
Q ss_pred eeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECC-chhhh---h---------h--hccCCCCceeeEEE
Q 019103 233 REVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLP-NLRER---L---------V--AAGYNGIDVLNGIA 296 (346)
Q Consensus 233 ~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~-~l~~~---~---------~--~~~~~~~~vlNGIA 296 (346)
.+ +..+.+. +|..++..-.++.|.+.|..+++.+..+... .+.+. + . ..........+.++
T Consensus 162 ~~---v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 162 DE---VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp SC---EEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred Cc---eeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 22 2345554 4555555556889999999988754332100 00000 0 0 00000234567899
Q ss_pred EeCCCCEEEEecCCCCcEEEEEEe
Q 019103 297 WDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 297 ~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
|+ ++ ++++|-..+.|.-.++.
T Consensus 239 ~~--~~-~l~~~~~d~~i~~wd~~ 259 (366)
T 3k26_A 239 WL--GD-LILSKSCENAIVCWKPG 259 (366)
T ss_dssp EE--TT-EEEEECSSSEEEEEEES
T ss_pred Ec--CC-EEEEEecCCEEEEEeCC
Confidence 98 44 56666667777666653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.3e-06 Score=88.48 Aligned_cols=207 Identities=7% Similarity=-0.023 Sum_probs=135.7
Q ss_pred eeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC
Q 019103 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 91 ~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
+.+.....+-|... ...++|+||+.++.+.+ .+..|++||..+++......-...... ++...+++.++.-.++
T Consensus 6 ~~~~~~~~~gh~~~--V~~lafspdg~~lAsgs--~Dg~I~lw~~~~~~~~~~~~~~~~V~~--l~fspg~~L~S~s~D~ 79 (902)
T 2oaj_A 6 FSLAETNKYGMSSK--PIAAAFDFTQNLLAIAT--VTGEVHIYGQQQVEVVIKLEDRSAIKE--MRFVKGIYLVVINAKD 79 (902)
T ss_dssp EEEEEEEEEECSSC--EEEEEEETTTTEEEEEE--TTSEEEEECSTTCEEEEECSSCCCEEE--EEEETTTEEEEEETTC
T ss_pred eeeccccccCCCCC--cEEEEECCCCCEEEEEe--CCCEEEEEeCCCcEEEEEcCCCCCEEE--EEEcCCCEEEEEECcC
Confidence 45666667777443 37999999998777766 456999999999887665543333333 4443344444445689
Q ss_pred EEEEEECCCCcEEEEEecCC-CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEec--------cCCeeeeeceee
Q 019103 171 TGFIYDQNNLNKLEEFTHQM-KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR--------YKGREVRNLNEL 241 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~-peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~--------~~G~pv~~lNEL 241 (346)
.+.++|.++.+.+.++.... -....+++|+++|++...++.|.++|.++.+.. ...+. ..|+. ..++.+
T Consensus 80 ~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~-~~V~sl 157 (902)
T 2oaj_A 80 TVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARL-SPIVSI 157 (902)
T ss_dssp EEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCC-CCCCEE
T ss_pred eEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCC-CCeEEE
Confidence 99999999999999997541 133446789999999888999999999998764 22220 01111 123456
Q ss_pred EeeC--CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccC-------CCCceeeEEEEeCCCCEEEEec
Q 019103 242 EFIK--GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGY-------NGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 242 E~~~--G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~-------~~~~vlNGIA~d~~~~~LfVTG 308 (346)
.+.. +.+.+.-..+..| +-|.++++.+.++... +.+... .+. ......+.++|+|+++.|...+
T Consensus 158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE-LPPFAP-GGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp EEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC-BCTTCC-CSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred EEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc-cCCcCC-CcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 6663 3555555667788 9999999999888542 110000 000 0013578999999987665544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-06 Score=80.73 Aligned_cols=204 Identities=12% Similarity=0.057 Sum_probs=130.7
Q ss_pred cceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEec--------------cCCCeeEEEEEEe--CCEEEEEEee
Q 019103 106 FTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQ--------------MEGSYFGEGLTLL--GEKLFQVTWL 168 (346)
Q Consensus 106 FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~--------------l~~~~FgeGit~~--g~~LY~ltw~ 168 (346)
-...+.|+| ++.++.+++ .+..|++||+.+++...... ..... ..++.. ++.++++.-.
T Consensus 45 ~v~~~~~s~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGG--SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV--ETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CEEEEEECTTTCCEEEEEE--TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE--EEEEECTTCTTCEEEEET
T ss_pred cEEEEEEecCCCCEEEEEc--CCCeEEEEECCCCcccceEeccccccccccccccCCCcE--EEEEEccCCCcEEEEEeC
Confidence 347899999 888777777 45699999999986543332 12222 334443 4445666667
Q ss_pred CCEEEEEECCCCcEEEEEecC-CCceeEEee---CCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019103 169 QKTGFIYDQNNLNKLEEFTHQ-MKDGWGLAT---DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~---Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
++.+.++|..+.+.+..+... ......+++ ++..++++..++.|.++|.++.+.+.++.-.. .+ ++.+.+.
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~---v~~~~~~ 195 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR--QE---ILAVSWS 195 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC--SC---EEEEEEC
T ss_pred CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC--Cc---EEEEEEC
Confidence 899999999999999999865 123334455 44577777778899999999988877665422 22 2345555
Q ss_pred -CC-EEEEEecCCCeEEEEeCCCCe-EEEEEECCchhhh--hhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 245 -KG-EVWANVWQTDCIARISHEDGV-VLGWVLLPNLRER--LVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 245 -~G-~LyaNv~~sn~I~vID~~TG~-Vv~~I~l~~l~~~--~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
++ ++++..-.++.|.+.|..+++ .+..++...-... ............++++|+|+++.|++.+. .+.++-.++
T Consensus 196 ~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~ 274 (408)
T 4a11_B 196 PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNS 274 (408)
T ss_dssp SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-TSCEEEEET
T ss_pred CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-CCeEEEEEC
Confidence 34 477766678899999999876 4444422110000 00000122346788999999888776654 445554444
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.67 E-value=6.5e-07 Score=81.25 Aligned_cols=194 Identities=9% Similarity=0.001 Sum_probs=125.1
Q ss_pred eeEEEecC----CEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE
Q 019103 108 QGLLYAEN----DTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 108 qGL~~~~d----~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
..+.++++ +.++.+++ .+..|.+||+.+++.+..+.- ........+...++.++++.-.++.+.++|..+.+.
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~--~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 150 (366)
T 3k26_A 73 YTCAWTYDSNTSHPLLAVAG--SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150 (366)
T ss_dssp EEEEEEECTTTCCEEEEEEE--TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE
T ss_pred EEEEeccCCCCCCCEEEEec--CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE
Confidence 68999988 66777766 456999999999999888763 333333323331344555556689999999999999
Q ss_pred EEEEe----cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEec------------------------cCCe
Q 019103 183 LEEFT----HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR------------------------YKGR 233 (346)
Q Consensus 183 i~ti~----~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~------------------------~~G~ 233 (346)
+..+. +. ......+++|++.|+++..++.|.++|..+.+....+... ..+.
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp EEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred EEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 99883 22 2234456788999988877889999999987654332210 0000
Q ss_pred eeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeE--------------EEEEECCchhhhhhhccCCCCceeeEEEEeC
Q 019103 234 EVRNLNELEFIKGEVWANVWQTDCIARISHEDGVV--------------LGWVLLPNLRERLVAAGYNGIDVLNGIAWDS 299 (346)
Q Consensus 234 pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~V--------------v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~ 299 (346)
-..++.+.+. |..++..-.++.|.+.|..+++. +..+... ....+.++|+|
T Consensus 231 -~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v~~~~~s~ 295 (366)
T 3k26_A 231 -RNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-------------QCDIWYMRFSM 295 (366)
T ss_dssp -SSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-------------SCCSSCCCCEE
T ss_pred -cceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-------------CCcEEEEEEcC
Confidence 0123345555 44455555688899999888743 4444221 12346788999
Q ss_pred C--CCEEEEecCCCCcEEEEEE
Q 019103 300 N--RNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 300 ~--~~~LfVTGK~Wp~l~ev~l 319 (346)
+ ++.|++. -..+.|+--++
T Consensus 296 ~~~~~~l~~~-~~dg~i~vwd~ 316 (366)
T 3k26_A 296 DFWQKMLALG-NQVGKLYVWDL 316 (366)
T ss_dssp CTTSSEEEEE-CTTSCEEEEEC
T ss_pred CCCCcEEEEE-ecCCcEEEEEC
Confidence 8 6655544 45566655554
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.4e-06 Score=84.51 Aligned_cols=185 Identities=14% Similarity=0.066 Sum_probs=129.0
Q ss_pred cceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 106 FTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 106 FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
....+.|+|++. ++.+++ .+..|++||..+++....+.-. .......+.++++ ++++.-.++.+.++|..+.+.+
T Consensus 149 ~v~~v~f~p~~~~~l~s~s--~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGS--DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp CEEEEEECSSSSCEEEEEE--TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEE
T ss_pred CceEEEECCCCCeEEEEEe--CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEe
Confidence 446889999875 577777 5679999999999877765432 2233333333444 5555567899999999999998
Q ss_pred EEEe--------cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC
Q 019103 184 EEFT--------HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ 254 (346)
Q Consensus 184 ~ti~--------~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~ 254 (346)
.++. +. .-....++|||+.|..+..+++|.++|.++++.+.++..+.. .. .....+.+ ++...+....
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~l~s~s~ 302 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR-IE-DQQLGIIW-TKQALVSISA 302 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-GG-GCEEEEEE-CSSCEEEEET
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC-cc-ceeEEEEE-cCCEEEEEeC
Confidence 8884 22 124456788999998877788999999999999998887531 00 01111333 5555666667
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
.+.|.+.|+++++.+..+.- + ....+.+||+|+++.|+.++.
T Consensus 303 d~~i~~~~~~~~~~~~~~~g---------h----~~~v~~l~~spdg~~l~s~s~ 344 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYG---------H----NKAITALSSSADGKTLFSADA 344 (611)
T ss_dssp TCCEEEEETTTTEEEEEECC---------C----SSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEeCCCCCcceEEcC---------C----CCCEEEEEEeCCCCEEEEEeC
Confidence 88999999999987655411 1 134688999999998877654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.67 E-value=6.8e-07 Score=84.46 Aligned_cols=181 Identities=10% Similarity=0.047 Sum_probs=121.6
Q ss_pred ceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEec--c-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE
Q 019103 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQ--M-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 107 TqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~--l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
...+.+++++ .++.+++ .+..|.+||+.+++.+..+. - ........+..+++.| ++.-.++.+.++|..+.+.
T Consensus 134 v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 134 VGIVAWHPTAQNVLLSAG--CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI-CTSCRDKRVRVIEPRKGTV 210 (402)
T ss_dssp EEEEEECSSBTTEEEEEE--TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE-EEEETTSEEEEEETTTTEE
T ss_pred EEEEEECcCCCCEEEEEc--CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE-EEEecCCcEEEEeCCCCce
Confidence 4789999987 5777777 45699999999999888873 2 2333332233334444 4455789999999999999
Q ss_pred EEEEec--CC--CceeEEeeCCCEEEEE---CCCCeEEEEeCCCCcE-EEEEEeccCCeeeeeceeeEee--CCEEEEEe
Q 019103 183 LEEFTH--QM--KDGWGLATDGKVLFGS---DGSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFI--KGEVWANV 252 (346)
Q Consensus 183 i~ti~~--~~--peGwGLt~Dg~~LyvS---dGs~~l~vIDp~T~kv-i~~I~V~~~G~pv~~lNELE~~--~G~LyaNv 252 (346)
+.++.. .. .....+++|++.|++. ..++.|.++|..+++. +........ .. +..+.+. +..|++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~---v~~~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 211 VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS-SG---VLLPFFDPDTNIVYLCG 286 (402)
T ss_dssp EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC-SS---CEEEEEETTTTEEEEEE
T ss_pred eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCC-Cc---eeEEEEcCCCCEEEEEE
Confidence 999832 21 3455678898888886 5688999999998765 333333222 11 2235555 34677777
Q ss_pred cCCCeEEEEeCCCCeE-EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019103 253 WQTDCIARISHEDGVV-LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 253 ~~sn~I~vID~~TG~V-v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
..++.|.+.|..+++. +..+.. . .......+++|+|++..+.
T Consensus 287 ~~dg~i~i~d~~~~~~~~~~l~~--~---------~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 287 KGDSSIRYFEITSEAPFLHYLSM--F---------SSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp TTCSCEEEEEECSSTTCEEEEEE--E---------CCSSCCSEEEECCGGGSCG
T ss_pred cCCCeEEEEEecCCCcceEeecc--c---------ccCCcccceEEecccccce
Confidence 6688999999999883 333321 1 1123568899999887543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.9e-07 Score=78.95 Aligned_cols=186 Identities=11% Similarity=0.093 Sum_probs=111.7
Q ss_pred ceeEEEecCCEEEEEcC--CCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC--EEEEEECCCCcE
Q 019103 107 TQGLLYAENDTLFESTG--LYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK--TGFIYDQNNLNK 182 (346)
Q Consensus 107 TqGL~~~~d~~LyeStG--lyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~--~v~V~D~~tl~~ 182 (346)
...+.+++|++.+.... ..+...|..+|..+++. ..+......+...+.++++.|+.+...++ .++.+|..+.+.
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~ 165 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE 165 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc
Confidence 36799999985333333 22467899999988874 33333333444444556778887766677 466666776655
Q ss_pred EEEEecC-CCceeEEeeCCCEEEEE---CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecC--
Q 019103 183 LEEFTHQ-MKDGWGLATDGKVLFGS---DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQ-- 254 (346)
Q Consensus 183 i~ti~~~-~peGwGLt~Dg~~LyvS---dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~-- 254 (346)
..-.... ......+++||+.|+++ |+...|+.+|+.+.++ ..+ ...... ...+.+. +| +|++....
T Consensus 166 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~~~~---~~~~~~s~dg~~l~~~~~~~~ 239 (297)
T 2ojh_A 166 TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV-ERI--TDSAYG---DWFPHPSPSGDKVVFVSYDAD 239 (297)
T ss_dssp EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE-EEC--CCCSEE---EEEEEECTTSSEEEEEEEETT
T ss_pred eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc-EEE--ecCCcc---cCCeEECCCCCEEEEEEcCCC
Confidence 3322222 23455678999988764 3567888888766554 222 222222 2234444 44 55544332
Q ss_pred --------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 255 --------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 255 --------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
...|.++|.++++......+.+- ......++|+|+++.|++++..
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGGNVETLFDLFGG-----------QGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSCSCEEEEEEEES-----------TTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCcccccCceEEEEEecCCCCceeeeccCCC-----------CcccccceECCCCCEEEEEEec
Confidence 25699999999986544432110 1124568899999999887654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-06 Score=80.23 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=117.5
Q ss_pred EEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-eEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019103 110 LLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 110 L~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
..++|||+ |+.++...|...|.++|+++|+.......+... ++..+++++++|+.+.. ++.++++|.++++....+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~g~~~~~~~ 119 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-GRNLMRVDLATLEENVVYQ 119 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-TTEEEEEETTTCCEEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-CCeEEEEECCCCcceeeee
Confidence 67899995 444443346668999999999877655444322 24446778888887763 4789999999998776655
Q ss_pred cCCC----ceeEEeeCCCEEEEE----------------------CCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019103 188 HQMK----DGWGLATDGKVLFGS----------------------DGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 188 ~~~p----eGwGLt~Dg~~LyvS----------------------dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
.+.. ..|.+++||+.++.. +....|+++|+++.+...-..- . + .++.+
T Consensus 120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~----~~~~~ 193 (388)
T 3pe7_A 120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-N-Q----WLGHP 193 (388)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-S-S----CEEEE
T ss_pred chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-C-c----ccccc
Confidence 4311 224457899887642 1347899999999876433222 1 1 12233
Q ss_pred Eee--CC-EE-EEEecC----CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEE-EEecCC-C
Q 019103 242 EFI--KG-EV-WANVWQ----TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRI-FVTGKL-W 311 (346)
Q Consensus 242 E~~--~G-~L-yaNv~~----sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~L-fVTGK~-W 311 (346)
.+. || +| |+.... ...|.++|++++++.... . ..........+|+|++++| |++... +
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~---------~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (388)
T 3pe7_A 194 IYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK---T---------HAEGESCTHEFWVPDGSALVYVSYLKGS 261 (388)
T ss_dssp EEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC---C---------CCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred EECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee---e---------CCCCcccccceECCCCCEEEEEecCCCC
Confidence 343 34 44 444322 448999999887642211 1 0111234578999999977 555432 2
Q ss_pred Cc--EEEEEE
Q 019103 312 PK--LYEINL 319 (346)
Q Consensus 312 p~--l~ev~l 319 (346)
+. ||.+.+
T Consensus 262 ~~~~l~~~d~ 271 (388)
T 3pe7_A 262 PDRFIYSADP 271 (388)
T ss_dssp CCEEEEEECT
T ss_pred CcceEEEEec
Confidence 33 776654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.1e-06 Score=77.99 Aligned_cols=181 Identities=9% Similarity=0.062 Sum_probs=119.7
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE-eCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~-~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
....+.+++++.||+++. ...|..+|.+ |+......++...+ ..+.. .++.||+.+ +.++.+| .+.+.+.
T Consensus 138 ~~~~~~~~~~g~l~vgt~---~~~l~~~d~~-g~~~~~~~~~~~~~-~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~ 208 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVGSN---DNYLYAINPD-GTEKWRFKTNDAIT-SAASIGKDGTIYFGS---DKVYAIN-PDGTEKW 208 (330)
T ss_dssp CCSCCEECTTSCEEEECT---TSEEEEECTT-SCEEEEEECSSCCC-SCCEECTTCCEEEES---SSEEEEC-TTSCEEE
T ss_pred eeeeeEEcCCCEEEEEcC---CCEEEEECCC-CCEeEEEecCCCce-eeeEEcCCCEEEEEe---CEEEEEC-CCCcEEE
Confidence 346777887889999874 3589999999 98887777654332 23445 367899999 8899999 7888877
Q ss_pred EEecCCCceeEEeeCCC-EEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEe
Q 019103 185 EFTHQMKDGWGLATDGK-VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARIS 262 (346)
Q Consensus 185 ti~~~~peGwGLt~Dg~-~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID 262 (346)
++..+...-..+..|.+ .||++..++.|+.+|+ +.+.+.+...... . .+.+... +|.||+... .+.|.++|
T Consensus 209 ~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~---~~~~~~~~~g~l~v~t~-~ggl~~~d 281 (330)
T 3hxj_A 209 NFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKR--I---ESSPVIGNTDTIYFGSY-DGHLYAIN 281 (330)
T ss_dssp EECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSC--C---CSCCEECTTSCEEEECT-TCEEEEEC
T ss_pred EEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCC--c---cccceEcCCCeEEEecC-CCCEEEEC
Confidence 77654222233444433 7888766678999996 5566555554321 1 1123334 789998764 45899999
Q ss_pred CCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 263 HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 263 ~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
+ +|+.+..+.+++ ...+.++.++++ +|||+.. .+.++-..
T Consensus 282 ~-~g~~~~~~~~~~-------------~~~~~~~~d~~g-~l~~gt~-~G~~~~~~ 321 (330)
T 3hxj_A 282 P-DGTEKWNFETGS-------------WIIATPVIDENG-TIYFGTR-NGKFYALF 321 (330)
T ss_dssp T-TSCEEEEEECSS-------------CCCSCCEECTTC-CEEEECT-TSCEEEEE
T ss_pred C-CCcEEEEEEcCC-------------ccccceEEcCCC-EEEEEcC-CCeEEEEe
Confidence 7 899888776521 234567787665 5777543 45555443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-06 Score=77.34 Aligned_cols=197 Identities=9% Similarity=0.025 Sum_probs=123.9
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECC--CCcEEEEeccCCCeeEEEEEEe----CCEEEEEEeeCCEEEEEECCCC
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALE--TGKVEAINQMEGSYFGEGLTLL----GEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~--Tgkv~~~~~l~~~~FgeGit~~----g~~LY~ltw~~~~v~V~D~~tl 180 (346)
...+.|++++.++.+++ .+..|++||+. +++.+..+.-.... -..++.. ++.|+ +.-.++.+.++|..+.
T Consensus 14 v~~~~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCS--SDKTIKIFEVEGETHKLIDTLTGHEGP-VWRVDWAHPKFGTILA-SCSYDGKVLIWKEENG 89 (379)
T ss_dssp EEEEEECSSSSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSC-EEEEEECCGGGCSEEE-EEETTSCEEEEEEETT
T ss_pred EEEEEEcCCCCEEEEEE--CCCcEEEEecCCCcceeeeEecCCCCc-EEEEEeCCCCCCCEEE-EeccCCEEEEEEcCCC
Confidence 37899999998777766 45699999998 44555544322221 2334443 34444 4455789999999988
Q ss_pred c--EEEEEecC--CCceeEEeeC--CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee----------
Q 019103 181 N--KLEEFTHQ--MKDGWGLATD--GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI---------- 244 (346)
Q Consensus 181 ~--~i~ti~~~--~peGwGLt~D--g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~---------- 244 (346)
+ .+..+... .-....++++ ++.|+++..++.|.++|..+.+....+....+..++ +.+.+.
T Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV---NSASWAPATIEEDGEH 166 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE---EEEEECCCC-------
T ss_pred ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCce---EEEEEcCccccccccc
Confidence 7 55555432 1234456777 888888888899999999888655555443332332 234444
Q ss_pred ----CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCC--CEEEEecCCCCcEEEEE
Q 019103 245 ----KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNR--NRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 245 ----~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~--~~LfVTGK~Wp~l~ev~ 318 (346)
++..++..-.+..|.+.|..+++....+.. .+. ......+.++|+|++ ..++++|-..+.|.--.
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~--------~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES-TLE--------GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEE-EEC--------CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE-EEe--------cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 366666666688899999888763322211 111 012356889999995 55666666666655544
Q ss_pred E
Q 019103 319 L 319 (346)
Q Consensus 319 l 319 (346)
+
T Consensus 238 ~ 238 (379)
T 3jrp_A 238 Q 238 (379)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-06 Score=79.05 Aligned_cols=212 Identities=10% Similarity=-0.001 Sum_probs=128.9
Q ss_pred EEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCC-CcEEEEecc--------CCCeeEEEEEEeCCEEEEEEe
Q 019103 97 NEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALET-GKVEAINQM--------EGSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 97 ~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~T-gkv~~~~~l--------~~~~FgeGit~~g~~LY~ltw 167 (346)
+.+..........+.+++++.++.++ .+..|.+||+.+ ++....+.+ ........+.+++..++++.-
T Consensus 170 ~~~~~~h~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~ 246 (447)
T 3dw8_B 170 RIFANAHTYHINSISINSDYETYLSA---DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS 246 (447)
T ss_dssp EEECSCCSSCCCEEEECTTSSEEEEE---CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE
T ss_pred EEeccCCCcceEEEEEcCCCCEEEEe---CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe
Confidence 34433334445799999999877774 367999999994 555554321 122223222333424555555
Q ss_pred eCCEEEEEECCCCcE----EEEEecCC--------------CceeEEeeCCCEEEEECCCCeEEEEeCCC-CcEEEEEEe
Q 019103 168 LQKTGFIYDQNNLNK----LEEFTHQM--------------KDGWGLATDGKVLFGSDGSSMLYQIDPQT-LKVIRKDIV 228 (346)
Q Consensus 168 ~~~~v~V~D~~tl~~----i~ti~~~~--------------peGwGLt~Dg~~LyvSdGs~~l~vIDp~T-~kvi~~I~V 228 (346)
.++.+.++|..+.+. +..+.... -....+++||+.|..+.. +.|.++|..+ .+.+.++..
T Consensus 247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 247 SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEES
T ss_pred CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeec
Confidence 689999999999886 66665421 134457789999988766 9999999987 777666665
Q ss_pred ccCCeeeee------------ceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCch--hhhhhh----------
Q 019103 229 RYKGREVRN------------LNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNL--RERLVA---------- 283 (346)
Q Consensus 229 ~~~G~pv~~------------lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l--~~~~~~---------- 283 (346)
... .... ...+.+. +|...+..-.++.|.+.|..+++++. +....- ++....
T Consensus 326 ~~~--~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 402 (447)
T 3dw8_B 326 HEY--LRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGK 402 (447)
T ss_dssp CGG--GTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSC
T ss_pred ccc--ccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCC
Confidence 321 0000 0114444 45544666678999999999999873 222110 000000
Q ss_pred --------ccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 284 --------AGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 284 --------~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
.......-...+||+|+++.|.++..+--.+|
T Consensus 403 ~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~ 442 (447)
T 3dw8_B 403 RKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIF 442 (447)
T ss_dssp CCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEE
T ss_pred cccccccccccccCCceeEEEECCCCCEEEEEecceeeee
Confidence 00011223567999999999998876543333
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.3e-07 Score=85.42 Aligned_cols=201 Identities=11% Similarity=0.070 Sum_probs=128.1
Q ss_pred eeEEEecCCE-EEEEcCC--------CCCCeEEEEECCCCc---EEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEE
Q 019103 108 QGLLYAENDT-LFESTGL--------YGRSSVRRVALETGK---VEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIY 175 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGl--------yg~s~V~~iDl~Tgk---v~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~ 175 (346)
..++|+|++. ++.+... ..+..|++||+.+++ .+.............+..+++.| ++...++.+.++
T Consensus 16 ~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~vw 94 (416)
T 2pm9_A 16 ATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKII-AGALDNGSLELY 94 (416)
T ss_dssp CBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCE-EEEESSSCEEEE
T ss_pred ceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeE-EEEccCCeEEEe
Confidence 4678889885 6666511 145689999999986 33333334444443333344544 444567899999
Q ss_pred ECCC----CcEEEEEecC--CCceeEEeeC-CCEEEEECCCCeEEEEeCCCCc------EEEEEEe-ccCCeeeeeceee
Q 019103 176 DQNN----LNKLEEFTHQ--MKDGWGLATD-GKVLFGSDGSSMLYQIDPQTLK------VIRKDIV-RYKGREVRNLNEL 241 (346)
Q Consensus 176 D~~t----l~~i~ti~~~--~peGwGLt~D-g~~LyvSdGs~~l~vIDp~T~k------vi~~I~V-~~~G~pv~~lNEL 241 (346)
|..+ .+.+.++... .-....+++| ++.|+.+..++.|.++|..+.+ ....+.. ..+..+ ++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~ 171 (416)
T 2pm9_A 95 STNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE---VISL 171 (416)
T ss_dssp CCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC---CCEE
T ss_pred ecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC---eeEE
Confidence 9988 4566666532 2245567788 7777777778899999998876 3222211 111122 3345
Q ss_pred Eee-C-CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC---cEEE
Q 019103 242 EFI-K-GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP---KLYE 316 (346)
Q Consensus 242 E~~-~-G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp---~l~e 316 (346)
.+. + +.+++....+..|.+.|.++++.+..+....-.. ......+.++|+|++..++++|.... .|+.
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~ 244 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS-------GIKQQLSVVEWHPKNSTRVATATGSDNDPSILI 244 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS-------CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc-------ccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence 555 3 5677777778899999999999998885521000 00235789999999876666666555 6555
Q ss_pred EEE
Q 019103 317 INL 319 (346)
Q Consensus 317 v~l 319 (346)
.++
T Consensus 245 ~d~ 247 (416)
T 2pm9_A 245 WDL 247 (416)
T ss_dssp EET
T ss_pred EeC
Confidence 554
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-06 Score=91.51 Aligned_cols=201 Identities=10% Similarity=0.070 Sum_probs=135.7
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
..++.|++|++++.+.+ .+..|.+||..+++.+..+.-. .......+..+++.|.. .-.++.+.++|..+++.+.+
T Consensus 618 v~~~~~s~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCG--ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIAT-CSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp EEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTCCEEEE
T ss_pred EEEEEECCCCCEEEEEe--CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEE-EeCCCeEEEEECCCCceEEE
Confidence 46899999998887777 5569999999999988887633 33334333334554444 44679999999999999999
Q ss_pred EecCCC--ceeEEeeCCC--EEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEE
Q 019103 186 FTHQMK--DGWGLATDGK--VLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIAR 260 (346)
Q Consensus 186 i~~~~p--eGwGLt~Dg~--~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~v 260 (346)
+..... ....++++++ .++....++.|.++|..+.+.+.++.-.. .+ ++.+.+. +|...+..-.++.|.+
T Consensus 695 ~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~--~~---v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT--NS---VNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS--SC---EEEEEECSSTTEEEEEESSSEEEE
T ss_pred EcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC--CC---EEEEEEecCCCEEEEEECCCeEEE
Confidence 975312 2333566544 44444557899999999999877665322 22 2345554 5666666667889999
Q ss_pred EeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 261 ISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 261 ID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
.|..+++....+......................++|+|+++.+++++. +.++..
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~--~~v~~~ 824 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK--NKVLLF 824 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET--TEEEEE
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC--CcEEEE
Confidence 9999999999987644321100000012335678999999999999874 444433
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-05 Score=77.09 Aligned_cols=178 Identities=8% Similarity=-0.034 Sum_probs=119.0
Q ss_pred EecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCC
Q 019103 112 YAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM 190 (346)
Q Consensus 112 ~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~ 190 (346)
+++++.++.+++ .+..|++||+.+++.+....-. .......+..+++.++ +.-.++.+.++|..+++.+.++....
T Consensus 276 ~~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~h~ 352 (464)
T 3v7d_B 276 VSGHGNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDLENGELMYTLQGHT 352 (464)
T ss_dssp EEEETTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE-EEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EcCCCCEEEEEe--CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCcEEEEEeCCC
Confidence 345565555655 4569999999999988877533 3333333333445555 44567899999999999999997532
Q ss_pred CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEE
Q 019103 191 KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLG 270 (346)
Q Consensus 191 peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~ 270 (346)
..-..+..+++.|+.+..++.|.++|..+.+......-.. ++. ...+.. +|.+.+... ++.|.+-|.++|+.+.
T Consensus 353 ~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~---~~~-~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 353 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN---LSA-ITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEECTT---CCC-EEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred CcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeecCCC---Ccc-EEEEEe-CCCEEEEec-CCeEEEEECCCCcEEe
Confidence 3344577888888888788899999999988665544321 111 111222 444444333 7899999999999887
Q ss_pred EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 271 WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 271 ~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
.+... .......++|+ ++.+++++....
T Consensus 427 ~~~~~------------~~~~v~~v~~~--~~~l~~~~~~~g 454 (464)
T 3v7d_B 427 ANILK------------DADQIWSVNFK--GKTLVAAVEKDG 454 (464)
T ss_dssp SCTTT------------TCSEEEEEEEE--TTEEEEEEEETT
T ss_pred hhhcc------------CCCcEEEEEec--CCEEEEEEEeCC
Confidence 65221 12356789997 678888876544
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-05 Score=75.38 Aligned_cols=197 Identities=14% Similarity=0.058 Sum_probs=133.4
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~ 173 (346)
+.+.+++. .......+.++ +.++.+++ .+..|++||+.+++.+..+.-.... -..+...++.++.. -.++.+.
T Consensus 150 ~~~~~~~~-h~~~v~~~~~~--~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~l~s~-s~dg~i~ 222 (445)
T 2ovr_B 150 KCLRTLVG-HTGGVWSSQMR--DNIIISGS--TDRTLKVWNAETGECIHTLYGHTST-VRCMHLHEKRVVSG-SRDATLR 222 (445)
T ss_dssp CEEEECCC-CSSCEEEEEEE--TTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSC-EEEEEEETTEEEEE-ETTSEEE
T ss_pred cEEEEEcC-CCCCEEEEEec--CCEEEEEe--CCCeEEEEECCcCcEEEEECCCCCc-EEEEEecCCEEEEE-eCCCEEE
Confidence 44555542 12233678886 33455555 4569999999999988877643332 34567777765554 4679999
Q ss_pred EEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEec
Q 019103 174 IYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW 253 (346)
Q Consensus 174 V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~ 253 (346)
++|..+.+.+.++......-..++.|++.++++..++.|.++|.++.+.+.++.... .+ +..+.+.+.++++. -
T Consensus 223 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~---v~~~~~~~~~l~~~-~ 296 (445)
T 2ovr_B 223 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NR---VYSLQFDGIHVVSG-S 296 (445)
T ss_dssp EEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS--SC---EEEEEECSSEEEEE-E
T ss_pred EEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCC--Cc---eEEEEECCCEEEEE-e
Confidence 999999999999875433455678899999998888999999999999887775422 22 23466634455544 4
Q ss_pred CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 254 QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.++.|.+.|..+++.+..+.-. .....+++++ ++ ++++|-..+.|.-.++
T Consensus 297 ~d~~i~i~d~~~~~~~~~~~~~-------------~~~v~~~~~~--~~-~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 297 LDTSIRVWDVETGNCIHTLTGH-------------QSLTSGMELK--DN-ILVSGNADSTVKIWDI 346 (445)
T ss_dssp TTSCEEEEETTTCCEEEEECCC-------------CSCEEEEEEE--TT-EEEEEETTSCEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEcCC-------------cccEEEEEEe--CC-EEEEEeCCCeEEEEEC
Confidence 5889999999999998887431 1234567775 34 4455555566555544
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-05 Score=77.84 Aligned_cols=179 Identities=12% Similarity=0.175 Sum_probs=119.3
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
..++.++||+..+.+++ .+..|++||..+.++...........+..+.++++.| +....++.+.++|. +.+.+.++
T Consensus 306 v~~~~~~~~~~~l~t~~--~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~~~~dg~v~~~~~-~~~~~~~~ 381 (577)
T 2ymu_A 306 VWGVAFSPDGQTIASAS--DDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWNR-NGQLLQTL 381 (577)
T ss_dssp EEEEEECTTSSEEEEEE--TTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEET-TCCEEEEE
T ss_pred eEEEEECCCCCEEEEEe--CCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEE-EEEeCCCEEEEEcC-CCCEEEEe
Confidence 47899999998777777 5569999998877654433333444343333344444 44567889999995 56777777
Q ss_pred ecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeC
Q 019103 187 THQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISH 263 (346)
Q Consensus 187 ~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~ 263 (346)
... ...+..+++||++|.+...+..|.++|. +.+.+.++.-.. .++ ..+.+. |++..|..-.+..|.+-|.
T Consensus 382 ~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~--~~v---~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 382 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSV---WGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS--SCE---EEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC--CCe---EEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 642 2245678899999988777889999995 566666654322 232 235554 5655665556778888885
Q ss_pred CCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 264 EDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 264 ~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
+++.+..+.-. ....+.+||+|+++.|..++.
T Consensus 456 -~~~~~~~~~~~-------------~~~v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 456 -NGQLLQTLTGH-------------SSSVRGVAFSPDGQTIASASD 487 (577)
T ss_dssp -TSCEEEEEECC-------------SSCEEEEEECTTSCEEEEEET
T ss_pred -CCCEEEEEcCC-------------CCCEEEEEEcCCCCEEEEEeC
Confidence 66776666321 124578999999987766543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-05 Score=82.53 Aligned_cols=196 Identities=12% Similarity=0.065 Sum_probs=125.9
Q ss_pred eeEEEecCC-EEEEEcCCCC-------------CCeEEEEECCCCcEEEEe--cc---CCCeeEEEEEEeCCEEEEEEee
Q 019103 108 QGLLYAEND-TLFESTGLYG-------------RSSVRRVALETGKVEAIN--QM---EGSYFGEGLTLLGEKLFQVTWL 168 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg-------------~s~V~~iDl~Tgkv~~~~--~l---~~~~FgeGit~~g~~LY~ltw~ 168 (346)
.++.++||| .||.++...+ ...|.++|+.+++..... .. +...++..++.+|+.|+...+.
T Consensus 174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 253 (710)
T 2xdw_A 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIRE 253 (710)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEEC
T ss_pred ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEc
Confidence 579999998 5666654322 346999999998732111 22 1223455566678888877663
Q ss_pred ----CCEEEEEECCC------Cc-EEEEEecC-CCceeEEeeCCCEEEE-ECC---CCeEEEEeCCCCcE--EEEEEecc
Q 019103 169 ----QKTGFIYDQNN------LN-KLEEFTHQ-MKDGWGLATDGKVLFG-SDG---SSMLYQIDPQTLKV--IRKDIVRY 230 (346)
Q Consensus 169 ----~~~v~V~D~~t------l~-~i~ti~~~-~peGwGLt~Dg~~Lyv-SdG---s~~l~vIDp~T~kv--i~~I~V~~ 230 (346)
.+.++++|.++ .+ ....+... ......+++||++||+ +|. ...|+++|.++.+. ...+.-..
T Consensus 254 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 254 GCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp SSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred cCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence 57899999876 43 34555432 2233458899998877 553 34899999988642 22332221
Q ss_pred CCeeeeeceeeEee-CCEEEEEecCC--CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 231 KGREVRNLNELEFI-KGEVWANVWQT--DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 231 ~G~pv~~lNELE~~-~G~LyaNv~~s--n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
.. ..+..+.+. +++++++.-.. ..|.++|+++|+.+..+.++ .....+++++|++++++++
T Consensus 334 ~~---~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-------------~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 334 EK---DVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-------------VGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp SS---CEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-------------SSEEEEEECCTTCSEEEEE
T ss_pred CC---CeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-------------CceEEEEecCCCCCEEEEE
Confidence 11 123446666 67877655433 36899999999988888552 1245789999999988877
Q ss_pred cCCC---CcEEEEEE
Q 019103 308 GKLW---PKLYEINL 319 (346)
Q Consensus 308 GK~W---p~l~ev~l 319 (346)
.... +.+|...+
T Consensus 398 ~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 398 FTSFLSPGIIYHCDL 412 (710)
T ss_dssp EECSSCCCEEEEEET
T ss_pred EeCCCCCCEEEEEEC
Confidence 4443 56777765
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-05 Score=76.75 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=131.5
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~ 173 (346)
+.+.+++. .......+.+ ++.++.+.+ .+..|++||+.+++.+....-.... -..++..++.++. .-.++.+.
T Consensus 164 ~~~~~~~~-h~~~v~~l~~--~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~l~s-~s~dg~i~ 236 (435)
T 1p22_A 164 ECKRILTG-HTGSVLCLQY--DERVIITGS--SDSTVRVWDVNTGEMLNTLIHHCEA-VLHLRFNNGMMVT-CSKDRSIA 236 (435)
T ss_dssp CEEEEECC-CSSCEEEEEC--CSSEEEEEE--TTSCEEEEESSSCCEEEEECCCCSC-EEEEECCTTEEEE-EETTSCEE
T ss_pred eEEEEEcC-CCCcEEEEEE--CCCEEEEEc--CCCeEEEEECCCCcEEEEEcCCCCc-EEEEEEcCCEEEE-eeCCCcEE
Confidence 34555652 1223356666 566666656 4569999999999988887644332 3446666665444 45679999
Q ss_pred EEECCCCcEEE---EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEE
Q 019103 174 IYDQNNLNKLE---EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWA 250 (346)
Q Consensus 174 V~D~~tl~~i~---ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Lya 250 (346)
++|..+.+.+. .+......-..++.|++.++++..++.|.++|.++++.+.++.-.. .++ ..+.+.+..+++
T Consensus 237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v---~~~~~~~~~l~~ 311 (435)
T 1p22_A 237 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK--RGI---ACLQYRDRLVVS 311 (435)
T ss_dssp EEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCS--SCE---EEEEEETTEEEE
T ss_pred EEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC--CcE---EEEEeCCCEEEE
Confidence 99998887663 2222123445678899999998889999999999999988877533 222 345564445544
Q ss_pred EecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 251 NVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 251 Nv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
...++.|.+.|..+|+.+.++... ......++++ ++. +++|-..+.|.--++
T Consensus 312 -g~~dg~i~iwd~~~~~~~~~~~~h-------------~~~v~~~~~~--~~~-l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 312 -GSSDNTIRLWDIECGACLRVLEGH-------------EELVRCIRFD--NKR-IVSGAYDGKIKVWDL 363 (435)
T ss_dssp -EETTSCEEEEETTTCCEEEEECCC-------------SSCEEEEECC--SSE-EEEEETTSCEEEEEH
T ss_pred -EeCCCeEEEEECCCCCEEEEEeCC-------------cCcEEEEEec--CCE-EEEEeCCCcEEEEEC
Confidence 446889999999999998888431 1245778884 444 555556666665554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=4.1e-06 Score=86.16 Aligned_cols=162 Identities=16% Similarity=0.111 Sum_probs=109.0
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe----eEEEEEEeCC------EEEEEEe-----eCCEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY----FGEGLTLLGE------KLFQVTW-----LQKTG 172 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~----FgeGit~~g~------~LY~ltw-----~~~~v 172 (346)
.|+++. ++++|+++. +..|..+|++||+++=+..++... +...-.+.++ .+|+.+. .++.+
T Consensus 111 ~g~a~~-~~~v~~~t~---dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v 186 (582)
T 1flg_A 111 RGAAIY-GDKVFFGTL---DASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRL 186 (582)
T ss_dssp CCCEEE-TTEEEEEET---TTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEE
T ss_pred CccEEE-CCEEEEEeC---CCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEE
Confidence 577876 689999874 359999999999998887665411 1111223445 7888653 36899
Q ss_pred EEEECCCCcEEEEEecCC----C-------------------c--------------------eeEEeeCCCEEEEECC-
Q 019103 173 FIYDQNNLNKLEEFTHQM----K-------------------D--------------------GWGLATDGKVLFGSDG- 208 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~~----p-------------------e--------------------GwGLt~Dg~~LyvSdG- 208 (346)
+.+|++|++++-+.+... | + ...++++.+.+|+..+
T Consensus 187 ~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn 266 (582)
T 1flg_A 187 FARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGN 266 (582)
T ss_dssp EEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECC
T ss_pred EEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCC
Confidence 999999999998876420 0 0 1235567789998442
Q ss_pred -----------------------CCeEEEEeCCCCcEEEEEEeccC------C--eeeeeceeeEeeCC---EEEEEecC
Q 019103 209 -----------------------SSMLYQIDPQTLKVIRKDIVRYK------G--REVRNLNELEFIKG---EVWANVWQ 254 (346)
Q Consensus 209 -----------------------s~~l~vIDp~T~kvi~~I~V~~~------G--~pv~~lNELE~~~G---~LyaNv~~ 254 (346)
++.|+-+|++|++++=+.+...+ + .|+ +-..+..+| .+++..-.
T Consensus 267 ~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~--l~~~~~~~G~~~~~v~~~~~ 344 (582)
T 1flg_A 267 PGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV--LFDYKAKDGKIVKATAHADR 344 (582)
T ss_dssp BSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE--EEEEECSSSCEEEEEEEECT
T ss_pred CCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE--EEeeecCCCCEEEEEEEECC
Confidence 15899999999999877766321 1 121 111111356 23333334
Q ss_pred CCeEEEEeCCCCeEEEEEECC
Q 019103 255 TDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~ 275 (346)
...+.++|.+||+++-.+++.
T Consensus 345 ~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 345 NGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp TSEEEEEETTTCCEEEEEESS
T ss_pred CceEEEEECCCCCEecccccc
Confidence 778999999999999888774
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-05 Score=76.71 Aligned_cols=208 Identities=10% Similarity=-0.030 Sum_probs=134.8
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCC--CeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCC
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGR--SSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~--s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
+.+.++.....+ ...+.|+++++.+.+.+...+ ..|..|| +++.+....-. .......+..+++.++++.-.++
T Consensus 107 ~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 183 (615)
T 1pgu_A 107 NVKSEFQVLAGP-ISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 183 (615)
T ss_dssp EEEEEEECCSSC-EEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTT
T ss_pred cccchhhccccc-EEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCC
Confidence 455566532333 489999999976655552221 4666666 77776666433 23333333334444666667789
Q ss_pred EEEEEECCCCcEEEEEecCCC-----ceeEEeeC-CCEEEEECCCCeEEEEeCCCCcEEEEEEec--cCCeeeeeceeeE
Q 019103 171 TGFIYDQNNLNKLEEFTHQMK-----DGWGLATD-GKVLFGSDGSSMLYQIDPQTLKVIRKDIVR--YKGREVRNLNELE 242 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~~p-----eGwGLt~D-g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~--~~G~pv~~lNELE 242 (346)
.+.++|..+.+.+.++..... ....+++| ++.|++...++.|.++|..+.+.+.++.-. .+..++ +.+.
T Consensus 184 ~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v---~~~~ 260 (615)
T 1pgu_A 184 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI---FALS 260 (615)
T ss_dssp EEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE---EEEE
T ss_pred cEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCce---EEEE
Confidence 999999999999999874311 23457788 899988877889999999999988777320 111232 3455
Q ss_pred eeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 243 FIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 243 ~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
+.++..++..-.++.|.+.|..+++.+..+....- +.......+++. +++.+++. -..+.++-.+
T Consensus 261 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~l~~~-~~~g~i~~~d 325 (615)
T 1pgu_A 261 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ---------QLGNQQVGVVAT-GNGRIISL-SLDGTLNFYE 325 (615)
T ss_dssp ESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTT---------CGGGCEEEEEEE-ETTEEEEE-ETTSCEEEEE
T ss_pred EcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC---------cccCceeEEEeC-CCCeEEEE-ECCCCEEEEE
Confidence 55666666555688999999999999999976321 112345677885 55655544 4455655444
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-05 Score=70.07 Aligned_cols=203 Identities=13% Similarity=0.131 Sum_probs=125.9
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc----EEEEecc-CCCeeEEEEEEeC---CEEEEEEeeCCEEEEE
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK----VEAINQM-EGSYFGEGLTLLG---EKLFQVTWLQKTGFIY 175 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk----v~~~~~l-~~~~FgeGit~~g---~~LY~ltw~~~~v~V~ 175 (346)
......+.|++++.++.+.+ .+..|++||+.+++ ....+.- .... ..++... +.++++.-.++.+.++
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCS--SDQHIKVFKLDKDTSNWELSDSWRAHDSSI--VAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEE--TTSEEEEEEECSSSCCEEEEEEEECCSSCE--EEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred ccceeEEEEcCCCCEEEEee--CCCeEEEEECCCCCCcceecceeccCCCcE--EEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 33457899999998777766 45699999999873 4443332 2333 3344432 4444555568999999
Q ss_pred ECCCC---------cEEEEEecC--CCceeEEeeC--CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCC--------ee
Q 019103 176 DQNNL---------NKLEEFTHQ--MKDGWGLATD--GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKG--------RE 234 (346)
Q Consensus 176 D~~tl---------~~i~ti~~~--~peGwGLt~D--g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G--------~p 234 (346)
|.++. +.+.++... .-....++++ ++.|+++..++.|.++|..+.+.+..+...... ..
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 99887 445666432 1234456777 888888878899999999888765544432100 00
Q ss_pred eeeceeeEee----CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC---EEEEe
Q 019103 235 VRNLNELEFI----KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN---RIFVT 307 (346)
Q Consensus 235 v~~lNELE~~----~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~---~LfVT 307 (346)
....+.+.+. ++..++..-..+.+...+..+++......+.. .....++++|+|++. .+++|
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-----------HKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-----------CCSCEEEEEECCCSSCSSEEEEE
T ss_pred ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC-----------CCcceeEEEECCCCCCcceEEEE
Confidence 1112233333 24455544456677777777777633332211 123568899999984 67778
Q ss_pred cCCCCcEEEEEEee
Q 019103 308 GKLWPKLYEINLRE 321 (346)
Q Consensus 308 GK~Wp~l~ev~l~~ 321 (346)
|-..+.|.--++..
T Consensus 236 ~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 236 GCKDGRIRIFKITE 249 (351)
T ss_dssp EETTSCEEEEEEEE
T ss_pred EcCCCeEEEEeCCC
Confidence 77777777666654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-05 Score=75.54 Aligned_cols=214 Identities=10% Similarity=0.086 Sum_probs=139.2
Q ss_pred EEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECC---CCcEEEEec--------cC---CCeeEEEEEEe---
Q 019103 96 VNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALE---TGKVEAINQ--------ME---GSYFGEGLTLL--- 158 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~---Tgkv~~~~~--------l~---~~~FgeGit~~--- 158 (346)
..++.|... ...+.+++++.++.+++ .+..|++||+. +|+...... +. .......+...
T Consensus 105 ~~~~~h~~~--v~~~~~~~~~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 105 SLTYDCSST--VTQITMIPNFDAFAVSS--KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp SEEEECSSC--EEEEEECTTSSEEEEEE--TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred eeeccCCCC--EEEEEEeCCCCEEEEEe--CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence 344556433 37999999888777777 45699999995 666544332 11 12222223321
Q ss_pred CCEEEEEEeeCCEEEEEECCCCcEEEEEec---C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCee
Q 019103 159 GEKLFQVTWLQKTGFIYDQNNLNKLEEFTH---Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGRE 234 (346)
Q Consensus 159 g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~---~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~p 234 (346)
++.++++.-.++.+.++|..+.+.+.++.. . .-....+++|++.|++...++.|.++|.++.+.+.++..... .+
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~ 259 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-AP 259 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-Cc
Confidence 245555556689999999999999999974 1 224445678999999988889999999999998888876432 23
Q ss_pred eeeceeeEee-----CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhh---h-hh---------ccCCCCceeeEEE
Q 019103 235 VRNLNELEFI-----KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRER---L-VA---------AGYNGIDVLNGIA 296 (346)
Q Consensus 235 v~~lNELE~~-----~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~---~-~~---------~~~~~~~vlNGIA 296 (346)
+. .+.+. +|.+.+..-.++.|.+.|..+++.+..+.-..-... . +. .+.........++
T Consensus 260 v~---~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 260 IT---HVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp EE---EEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred eE---EEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence 33 34222 466677776678899999999999998864210000 0 00 0000123456799
Q ss_pred EeCCCCEEEEecCCCCcEEEEEE
Q 019103 297 WDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 297 ~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
++ ++ .+++||-....|+--++
T Consensus 337 ~~-~~-~~l~s~~~d~~i~~wd~ 357 (437)
T 3gre_A 337 VS-ND-KILLTDEATSSIVMFSL 357 (437)
T ss_dssp EE-TT-EEEEEEGGGTEEEEEET
T ss_pred EC-Cc-eEEEecCCCCeEEEEEC
Confidence 99 44 67777777777666654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=5e-05 Score=72.49 Aligned_cols=201 Identities=9% Similarity=0.029 Sum_probs=131.5
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEe-CCEEEEEEeeCCE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLL-GEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~-g~~LY~ltw~~~~ 171 (346)
+.+.++.. .......+.+++++ ++++.+ .+..|++||+.+++.+....- ........+... ++...++.-.++.
T Consensus 153 ~~~~~~~~-h~~~V~~l~~~~~~-~l~s~s--~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 153 KFLLQLSG-HDGGVWALKYAHGG-ILVSGS--TDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp EEEEEECC-CSSCEEEEEECSTT-EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred cEEEEEeC-CCcCEEEEEEcCCC-EEEEEe--CCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence 45666652 23334789998877 555555 456999999999998877753 333333333332 3466666677899
Q ss_pred EEEEECCCCcEEE-----------------------EEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019103 172 GFIYDQNNLNKLE-----------------------EFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 172 v~V~D~~tl~~i~-----------------------ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
+.++|..+.+... .+......-..++++++.+++...++.|.++|..+++.+.++.-
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 308 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 308 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 9999998876443 22211223345788999999988888999999999998877654
Q ss_pred ccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 229 RYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
.. .+ +..+.+. +|...+..-.++.|.+.|.++|+.+.++.-. ......+++++ + .+++
T Consensus 309 ~~--~~---v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-------------~~~v~~~~~~~--~-~l~s 367 (464)
T 3v7d_B 309 HT--DR---IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-------------TALVGLLRLSD--K-FLVS 367 (464)
T ss_dssp CS--SC---EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-------------SSCEEEEEECS--S-EEEE
T ss_pred CC--CC---EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-------------CCcEEEEEEcC--C-EEEE
Confidence 22 22 2345555 4544555556889999999999998887431 12457788873 3 4555
Q ss_pred cCCCCcEEEEEE
Q 019103 308 GKLWPKLYEINL 319 (346)
Q Consensus 308 GK~Wp~l~ev~l 319 (346)
|-..+.|.--++
T Consensus 368 ~s~dg~v~vwd~ 379 (464)
T 3v7d_B 368 AAADGSIRGWDA 379 (464)
T ss_dssp EETTSEEEEEET
T ss_pred EeCCCcEEEEEC
Confidence 555565554433
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.5e-06 Score=81.04 Aligned_cols=163 Identities=10% Similarity=-0.067 Sum_probs=112.7
Q ss_pred cceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCC----eeEEEEEEe-CCEEEEEEeeCCEEEEEECCC
Q 019103 106 FTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGS----YFGEGLTLL-GEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 106 FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~----~FgeGit~~-g~~LY~ltw~~~~v~V~D~~t 179 (346)
....+.|++++. ++.+.+ .+..|++||..+++.+..+.-... .....+.++ ++.|+ +.-.++.+.++|..+
T Consensus 162 ~v~~~~~~~~~~~~l~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~ 238 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI-TVGSDRKISCFDGKS 238 (615)
T ss_dssp CEEEEEECSSSSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE-EEETTCCEEEEETTT
T ss_pred cEEEEEECCCCCcEEEEEe--CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEE-EEeCCCeEEEEECCC
Confidence 347899999885 666666 456999999999998888764332 323333334 34444 444579999999999
Q ss_pred CcEEEEE-----ecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEec
Q 019103 180 LNKLEEF-----THQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW 253 (346)
Q Consensus 180 l~~i~ti-----~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~ 253 (346)
.+.+.++ .+. .-....++ |++.|+++..++.|.++|..+.+.+.++......... ....+.+.++...+...
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 316 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN-QQVGVVATGNGRIISLS 316 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG-CEEEEEEEETTEEEEEE
T ss_pred CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC-ceeEEEeCCCCeEEEEE
Confidence 9999999 332 11333455 8889988877889999999999999888875321111 11123343554444444
Q ss_pred CCCeEEEEeCCCCeEEEEEE
Q 019103 254 QTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~ 273 (346)
..+.|.+.|..+++.+..+.
T Consensus 317 ~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 317 LDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp TTSCEEEEETTEEEEEEEEC
T ss_pred CCCCEEEEECCCCcEEEEEe
Confidence 58899999999998887773
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-05 Score=76.59 Aligned_cols=197 Identities=12% Similarity=0.058 Sum_probs=129.1
Q ss_pred ceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEecc--C--CCeeEEEEEE--eCCEEEEEEeeCCEEEEEECC-
Q 019103 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQM--E--GSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQN- 178 (346)
Q Consensus 107 TqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l--~--~~~FgeGit~--~g~~LY~ltw~~~~v~V~D~~- 178 (346)
...+.+.+++ ..+.+++ ++..|++||+.+|+.+..... + .......++. .++.++++.-.++.+.++|..
T Consensus 160 v~~~~~~~~~~~~l~s~s--~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~ 237 (380)
T 3iz6_a 160 ASSCQYVPDQETRLITGS--GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237 (380)
T ss_dssp CCCCBCCSSSSSCEEEEC--TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred eEEEEEecCCCCEEEEEC--CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence 3466677654 4455656 567999999999998776632 1 1111233443 245677777788999999987
Q ss_pred CCcEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC--CeeeeeceeeEee-CCEEEEEec
Q 019103 179 NLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--GREVRNLNELEFI-KGEVWANVW 253 (346)
Q Consensus 179 tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~--G~pv~~lNELE~~-~G~LyaNv~ 253 (346)
+.+.+.++.- . .-....++|||+.|+.+..+.+|.++|..+.+.+..+..... ......+..+.+. +|++.+.-.
T Consensus 238 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 317 (380)
T 3iz6_a 238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY 317 (380)
T ss_dssp TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC
T ss_pred CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE
Confidence 4566666652 2 235567889999988877788999999999988766544221 1111123345554 566666666
Q ss_pred CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 254 QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
.++.|.+-|..+++.+..+.. +.. .-....+.++|+|+++.| +||-...+|.
T Consensus 318 ~dg~i~vwd~~~~~~~~~~~~--~~~-------~h~~~v~~l~~s~dg~~l-~sgs~D~~i~ 369 (380)
T 3iz6_a 318 SNGDCYVWDTLLAEMVLNLGT--LQN-------SHEGRISCLGLSSDGSAL-CTGSWDKNLK 369 (380)
T ss_dssp TTSCEEEEETTTCCEEEEECC--SCS-------SCCCCCCEEEECSSSSEE-EEECTTSCEE
T ss_pred CCCCEEEEECCCCceEEEEec--ccC-------CCCCceEEEEECCCCCEE-EEeeCCCCEE
Confidence 788999999999998877632 110 012346789999998865 4555555543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.7e-05 Score=69.11 Aligned_cols=184 Identities=15% Similarity=0.162 Sum_probs=122.3
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
...+.++ +.++.+++ .+..|.+|| +++........ .......+...++..+++.-.++.+.++| ..+.+.+
T Consensus 107 i~~~~~~--~~~l~~~~--~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~ 178 (313)
T 3odt_A 107 VCSLSFQ--DGVVISGS--WDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKT 178 (313)
T ss_dssp EEEEEEE--TTEEEEEE--TTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEE
T ss_pred EEEEEec--CCEEEEEe--CCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEE
Confidence 3677774 33444545 456999999 66666666543 33333333332333444555678999999 4556666
Q ss_pred Eec--C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEE
Q 019103 186 FTH--Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARI 261 (346)
Q Consensus 186 i~~--~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vI 261 (346)
+.. . ......++++++ +++...++.|.++|..+.+.+.++.... .+ ++.+.+. +|+++ ..-.++.|.+.
T Consensus 179 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~---i~~~~~~~~~~l~-~~~~dg~v~iw 251 (313)
T 3odt_A 179 FSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SF---VYCIKLLPNGDIV-SCGEDRTVRIW 251 (313)
T ss_dssp ECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SC---EEEEEECTTSCEE-EEETTSEEEEE
T ss_pred EeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ce---EEEEEEecCCCEE-EEecCCEEEEE
Confidence 653 1 224445678888 6666678899999999999988876533 22 3346665 56544 44468899999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
|.++++.+..+.... .....++|+|+++ ++++-..+.|+--++.
T Consensus 252 d~~~~~~~~~~~~~~-------------~~i~~~~~~~~~~--~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 252 SKENGSLKQVITLPA-------------ISIWSVDCMSNGD--IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp CTTTCCEEEEEECSS-------------SCEEEEEECTTSC--EEEEETTSCEEEEESC
T ss_pred ECCCCceeEEEeccC-------------ceEEEEEEccCCC--EEEEeCCCcEEEEeCC
Confidence 999999998885521 2467899999998 4556667777766654
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-05 Score=74.24 Aligned_cols=183 Identities=12% Similarity=0.024 Sum_probs=121.8
Q ss_pred eEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC-cEEEEE
Q 019103 109 GLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL-NKLEEF 186 (346)
Q Consensus 109 GL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl-~~i~ti 186 (346)
-+.+.+++ .+..+++ ++..|++||..+|+.+..+..+... ..+...++.++++. ++.+.++|..+. +.+.++
T Consensus 63 ~~~~~~~~~~~~~~~~--~d~~v~iWd~~~~~~~~~~~~~~~v--~~v~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~ 136 (355)
T 3vu4_A 63 KVRMLHRTNYVAFVTG--VKEVVHIWDDVKKQDVSRIKVDAPV--KDLFLSREFIVVSY--GDVISVFKFGNPWKRITDD 136 (355)
T ss_dssp EEEECTTSSEEEEECS--STTEEEEEETTTTEEEEEEECSSCE--EEEEECSSEEEEEE--TTEEEEEESSTTCCBSSCC
T ss_pred EEEEcCCCCEEEEEEC--CccEEEEEECCCCcEEEEEECCCce--EEEEEcCCEEEEEE--cCEEEEEECCCCceeeEEe
Confidence 45555555 4545555 4569999999999999988876654 45677778777764 789999999988 777777
Q ss_pred ecCCCce-eEEeeCCCEEEEE--CCCCeEEEEeCCCCcE----------------EEEEEeccCCeeeeeceeeEee-CC
Q 019103 187 THQMKDG-WGLATDGKVLFGS--DGSSMLYQIDPQTLKV----------------IRKDIVRYKGREVRNLNELEFI-KG 246 (346)
Q Consensus 187 ~~~~peG-wGLt~Dg~~LyvS--dGs~~l~vIDp~T~kv----------------i~~I~V~~~G~pv~~lNELE~~-~G 246 (346)
.. +.| ..+++ +.+.++ ..++.|.++|..+.+. +..+. .+..++ +.+.+. +|
T Consensus 137 ~~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~--~h~~~v---~~~~~s~~g 207 (355)
T 3vu4_A 137 IR--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK--AHTNPI---KMVRLNRKS 207 (355)
T ss_dssp EE--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC--CCSSCE---EEEEECTTS
T ss_pred cc--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE--ccCCce---EEEEECCCC
Confidence 65 233 23555 555554 3477999999988651 12221 222232 345554 67
Q ss_pred EEEEEecCCCe-EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 247 EVWANVWQTDC-IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 247 ~LyaNv~~sn~-I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
.+.|+.-.+.+ |.+-|..+|+.+.++.... .....+.+||+|+++.|..++. ..++.--+
T Consensus 208 ~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~-----------h~~~v~~~~~s~~~~~l~s~s~-d~~v~iw~ 268 (355)
T 3vu4_A 208 DMVATCSQDGTIIRVFKTEDGVLVREFRRGL-----------DRADVVDMKWSTDGSKLAVVSD-KWTLHVFE 268 (355)
T ss_dssp SEEEEEETTCSEEEEEETTTCCEEEEEECTT-----------CCSCEEEEEECTTSCEEEEEET-TCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-----------CCCcEEEEEECCCCCEEEEEEC-CCEEEEEE
Confidence 77777767887 9999999999998885210 0124688999999887766654 34444333
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-05 Score=72.76 Aligned_cols=115 Identities=9% Similarity=-0.001 Sum_probs=84.6
Q ss_pred CcceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC--CEEEEEEeeCCEEEEEECCCCc
Q 019103 105 AFTQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 105 ~FTqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g--~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
.-...+.+++ ++.++.+++ .+..|++||+.+++.......+.......+...+ +.++++...++.+.++|..+.+
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSS--FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred CcEEEEEEccCCCcEEEEEe--CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 3347899998 556777766 4569999999999999888877665554444432 3366666778999999999999
Q ss_pred EEEEEecC--CCceeEEeeCCCE-EEEECCCCeEEEEeCCCCc
Q 019103 182 KLEEFTHQ--MKDGWGLATDGKV-LFGSDGSSMLYQIDPQTLK 221 (346)
Q Consensus 182 ~i~ti~~~--~peGwGLt~Dg~~-LyvSdGs~~l~vIDp~T~k 221 (346)
.+.++... .-....++++++. ++++..++.|.++|..+.+
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence 98888742 1244567888986 5556668899999987755
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-06 Score=86.39 Aligned_cols=184 Identities=10% Similarity=0.059 Sum_probs=113.3
Q ss_pred eeEEEecCCE-EEEEcCCCC---CCeEEEEECCCCcEEEEeccCCC-------------------------eeEEEEEEe
Q 019103 108 QGLLYAENDT-LFESTGLYG---RSSVRRVALETGKVEAINQMEGS-------------------------YFGEGLTLL 158 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg---~s~V~~iDl~Tgkv~~~~~l~~~-------------------------~FgeGit~~ 158 (346)
..+.++|||+ |+.++...| ...|.+||+++|+.......... .....++++
T Consensus 40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD 119 (741)
T 2ecf_A 40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD 119 (741)
T ss_dssp EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence 5899999996 443332112 24899999999997766643211 233345567
Q ss_pred CCEEEEEEeeCCEEEEEECCCCc--EEEEEec-C-CCceeEEeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCe
Q 019103 159 GEKLFQVTWLQKTGFIYDQNNLN--KLEEFTH-Q-MKDGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGR 233 (346)
Q Consensus 159 g~~LY~ltw~~~~v~V~D~~tl~--~i~ti~~-~-~peGwGLt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~ 233 (346)
|+.|+.+.. +.++++|.++.+ .+.++.. . ......++|||++|+. ++ +.|+++|.++.+.......+. .
T Consensus 120 g~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~--~~i~~~d~~~g~~~~~~~~~~--~ 193 (741)
T 2ecf_A 120 AQRLLFPLG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG--RNLWVIDLASGRQMQLTADGS--T 193 (741)
T ss_dssp SSEEEEEET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET--TEEEEEETTTTEEEECCCCCC--S
T ss_pred CCEEEEEeC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC--CcEEEEecCCCCEEEeccCCc--c
Confidence 788877764 999999999872 2333332 1 2345668999997655 54 489999999987653322221 1
Q ss_pred eee-------------eceeeEee-CC-EEEEEecCC--------------------------------CeEEEEeCCC-
Q 019103 234 EVR-------------NLNELEFI-KG-EVWANVWQT--------------------------------DCIARISHED- 265 (346)
Q Consensus 234 pv~-------------~lNELE~~-~G-~LyaNv~~s--------------------------------n~I~vID~~T- 265 (346)
.+. ....+.+. || +|+...... ..|.++|.++
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 110 01234444 45 455443322 1788999999
Q ss_pred CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 266 GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 266 G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
+++.. +.... ........++| ||++.|+++..
T Consensus 274 ~~~~~-~~~~~----------~~~~~~~~~~~-pDg~~l~~~~~ 305 (741)
T 2ecf_A 274 AQTQW-IDLGK----------EQDIYLARVNW-RDPQHLSFQRQ 305 (741)
T ss_dssp CCCEE-ECCCS----------CSSEEEEEEEE-EETTEEEEEEE
T ss_pred CceEE-ecCCC----------CcceEEEEEEe-CCCCEEEEEEe
Confidence 88643 32210 12346688999 99999997753
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.53 E-value=7.7e-06 Score=78.03 Aligned_cols=199 Identities=10% Similarity=-0.041 Sum_probs=118.6
Q ss_pred CCcceeEEEec--------CCEEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEEEe--CCEEEEEEeeCCEE
Q 019103 104 RAFTQGLLYAE--------NDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLL--GEKLFQVTWLQKTG 172 (346)
Q Consensus 104 ~~FTqGL~~~~--------d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~FgeGit~~--g~~LY~ltw~~~~v 172 (346)
..+.+.+.|+| |++++.|.| .+.+|++||+.+++..... ...... ..++.. +..+.++.-.++.+
T Consensus 136 ~~~v~~v~~~p~~~~~~~~d~~~las~s--~D~tv~~Wd~~~~~~~~~~~~~~~~v--~~v~~~p~~~~~l~~~~~d~~v 211 (393)
T 4gq1_A 136 HNFVNDIDIADVYSADNRLAEQVIASVG--DDCTLIIWRLTDEGPILAGYPLSSPG--ISVQFRPSNPNQLIVGERNGNI 211 (393)
T ss_dssp SSCEEEEEEEEEECTTCSEEEEEEEEEE--TTSEEEEEEEETTEEEEEEEECSSCE--EEEEEETTEEEEEEEEETTSEE
T ss_pred CCceEEEEEccccccccCCCCCEEEEEE--CCCeEEEEECCCCceeeeecCCCCCc--EEEEECCCCCceEEecCCCCEE
Confidence 45668999987 789999998 6679999999887654443 444443 345554 34566667788999
Q ss_pred EEEECCCCcEEEEEecC---------------------------CCceeEEe-eCCCEEEEECCCCeEEEEeCCCCcEEE
Q 019103 173 FIYDQNNLNKLEEFTHQ---------------------------MKDGWGLA-TDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~---------------------------~peGwGLt-~Dg~~LyvSdGs~~l~vIDp~T~kvi~ 224 (346)
.++|..+.+...+.... .-....+. +||+.|+....++++.++|..+.+...
T Consensus 212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~ 291 (393)
T 4gq1_A 212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN 291 (393)
T ss_dssp EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence 99999988765544210 00112222 688988887778899999998877665
Q ss_pred EEEeccC----------Ceeee---eceeeEee---CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCC
Q 019103 225 KDIVRYK----------GREVR---NLNELEFI---KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNG 288 (346)
Q Consensus 225 ~I~V~~~----------G~pv~---~lNELE~~---~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~ 288 (346)
.+..... ++... ......+. ++.+.+.--.+..|.+.|..+|+.+....- .
T Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~-------------~ 358 (393)
T 4gq1_A 292 EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ-------------L 358 (393)
T ss_dssp ------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE-------------C
T ss_pred eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC-------------C
Confidence 5543221 00000 00000111 334445555678899999999987655421 0
Q ss_pred CceeeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019103 289 IDVLNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 289 ~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
....+.+||+|+|+.|.++. .+.+..|+|..
T Consensus 359 ~~~V~svafspdG~~LA~as--~~Gv~lvrL~g 389 (393)
T 4gq1_A 359 GMPIVDFCWHQDGSHLAIAT--EGSVLLTRLMG 389 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEE--SSEEEEEEEGG
T ss_pred CCcEEEEEEcCCCCEEEEEe--CCCeEEEEEeC
Confidence 12457899999999998885 46788888754
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1e-05 Score=79.11 Aligned_cols=202 Identities=13% Similarity=0.162 Sum_probs=119.2
Q ss_pred ceeEEEec--CC--EEEEEcCCCCCCeEEEEECC--CCcEEEEeccCCCe--eEEEEEE-eCCEEEEEEe----------
Q 019103 107 TQGLLYAE--ND--TLFESTGLYGRSSVRRVALE--TGKVEAINQMEGSY--FGEGLTL-LGEKLFQVTW---------- 167 (346)
Q Consensus 107 TqGL~~~~--d~--~LyeStGlyg~s~V~~iDl~--Tgkv~~~~~l~~~~--FgeGit~-~g~~LY~ltw---------- 167 (346)
..||.+.. +| +||+.+-..+.++|.+++++ ++.....-.+...+ +.-.+.. ..+.+|+.+.
T Consensus 114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~ 193 (355)
T 3sre_A 114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS 193 (355)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHH
T ss_pred eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccccc
Confidence 47999865 35 69988765556787776554 44332222333222 2334444 4588999864
Q ss_pred -------eCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEEC-CCCeEEEEeCC-CCcEEEEEEeccCCeeeeec
Q 019103 168 -------LQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQ-TLKVIRKDIVRYKGREVRNL 238 (346)
Q Consensus 168 -------~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~-T~kvi~~I~V~~~G~pv~~l 238 (346)
..+.++.||+.+.+++.. ....|.|.+++||+++||++| ..++|+.+|.. +.++...-.+...|.|=.
T Consensus 194 ~e~~~~~~~g~vyr~d~~~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDG-- 270 (355)
T 3sre_A 194 WEMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDN-- 270 (355)
T ss_dssp HHHHTTCCCEEEEEECTTCCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEE--
T ss_pred chhhccCCccEEEEEECCeEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCce--
Confidence 236799999875444321 122579999999999999999 58899999854 344432212222344422
Q ss_pred eeeEee--CCEEEE-EecCCCeEEEEeCC--CCeEEEEEECCchhhhh-hhccC-CCCceeeE--EEEeCCCCEEEEecC
Q 019103 239 NELEFI--KGEVWA-NVWQTDCIARISHE--DGVVLGWVLLPNLRERL-VAAGY-NGIDVLNG--IAWDSNRNRIFVTGK 309 (346)
Q Consensus 239 NELE~~--~G~Lya-Nv~~sn~I~vID~~--TG~Vv~~I~l~~l~~~~-~~~~~-~~~~vlNG--IA~d~~~~~LfVTGK 309 (346)
+..+ +|.||+ +.|....|.++||+ .+..+.+|... +.+.. ...-+ .++.++.| .|. +.+++||+.+=
T Consensus 271 --i~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~-~~~~~~v~~v~~ddG~~l~~~T~a~-~~~g~L~iGsv 346 (355)
T 3sre_A 271 --ISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDI-LSEEPKVTVVYAENGTVLQGSTVAA-VYKGKLLIGTV 346 (355)
T ss_dssp --EEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECT-TSSSCEEEEEEEECSSSCCSEEEEE-EETTEEEEEES
T ss_pred --EEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEcc-CCCCcEEEEEEEcCCCEEEeeEEEE-EECCEEEEEEc
Confidence 5555 489998 45777778888887 47777887641 11100 00000 12333333 222 34578999876
Q ss_pred CCCcEE
Q 019103 310 LWPKLY 315 (346)
Q Consensus 310 ~Wp~l~ 315 (346)
..+.|+
T Consensus 347 ~~~~l~ 352 (355)
T 3sre_A 347 FHKALY 352 (355)
T ss_dssp SSCEEE
T ss_pred CCCcee
Confidence 666443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.52 E-value=5.1e-06 Score=79.94 Aligned_cols=208 Identities=15% Similarity=0.095 Sum_probs=134.5
Q ss_pred eeEEEEEEecCCCCcceeEEEecC-CEEEEEcCCCCCCeEEEEECCC----------CcEEEEecc-CCCeeEEEEEEeC
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALET----------GKVEAINQM-EGSYFGEGLTLLG 159 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~T----------gkv~~~~~l-~~~~FgeGit~~g 159 (346)
.+++...++|.... ..+.++++ +.++.+.+ .+..|++||+.+ ++.+..+.- ....++..+...+
T Consensus 118 ~~~~~~~~~h~~~v--~~l~~~p~~~~~lat~~--~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 118 KIEIEIKINHEGEV--NRARYMPQNACVIATKT--PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNL 193 (430)
T ss_dssp CEEEEEEEEESSCC--SEEEEETTEEEEEEEEC--SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTS
T ss_pred ceEEEEEEcCCCcE--EEEEECCCCCcEEEEEC--CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCC
Confidence 56778889996665 58999997 46776666 455899999987 444444432 2233332222334
Q ss_pred CEEEEEEeeCCEEEEEECCCCcE-------EEEEe-cC-CCceeEEeeCCCEEEE-ECCCCeEEEEeCCCC---cEEEEE
Q 019103 160 EKLFQVTWLQKTGFIYDQNNLNK-------LEEFT-HQ-MKDGWGLATDGKVLFG-SDGSSMLYQIDPQTL---KVIRKD 226 (346)
Q Consensus 160 ~~LY~ltw~~~~v~V~D~~tl~~-------i~ti~-~~-~peGwGLt~Dg~~Lyv-SdGs~~l~vIDp~T~---kvi~~I 226 (346)
..++++...++.+.++|..+... ...+. +. .-....++++++.+++ ...++.|.++|..+. +.+..+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 43666667789999999987322 22332 21 1244556775555555 446899999999887 455555
Q ss_pred EeccCCeeeeeceeeEee-CC-EEEEEecCCCeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019103 227 IVRYKGREVRNLNELEFI-KG-EVWANVWQTDCIARISHED-GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 227 ~V~~~G~pv~~lNELE~~-~G-~LyaNv~~sn~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
.... .+ ++.+.+. ++ +++|....++.|.+.|..+ ++.+..+... ......|+|+|+++.
T Consensus 274 ~~~~--~~---v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-------------~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 274 DAHT--AE---VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-------------KDEIFQVQWSPHNET 335 (430)
T ss_dssp ECCS--SC---EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-------------SSCEEEEEECSSCTT
T ss_pred ecCC--CC---eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-------------CCCEEEEEECCCCCC
Confidence 4322 22 3346665 34 5888877889999999998 4555555321 124678999999998
Q ss_pred EEEecCCCCcEEEEEEee
Q 019103 304 IFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 304 LfVTGK~Wp~l~ev~l~~ 321 (346)
++++|...+.|.--++..
T Consensus 336 ~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEEEETTSCCEEEEGGG
T ss_pred EEEEEeCCCcEEEEeCCC
Confidence 888887777776666543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-06 Score=88.56 Aligned_cols=201 Identities=8% Similarity=-0.069 Sum_probs=116.6
Q ss_pred ceeEEEecCCE-EEEEcCCC------CCCeEEEEECCCCcEEEEeccCCC----eeEEEEEEeCCEEEEEEeeCCEEEEE
Q 019103 107 TQGLLYAENDT-LFESTGLY------GRSSVRRVALETGKVEAINQMEGS----YFGEGLTLLGEKLFQVTWLQKTGFIY 175 (346)
Q Consensus 107 TqGL~~~~d~~-LyeStGly------g~s~V~~iDl~Tgkv~~~~~l~~~----~FgeGit~~g~~LY~ltw~~~~v~V~ 175 (346)
...+.|+|||+ |..+.... ....|.+||+++|+. ..+..... .....++++|+.|..+.. +.++++
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~ 139 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYC 139 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEE
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC--CeEEEE
Confidence 36899999996 43332211 126899999999986 33322111 223345667777666553 799999
Q ss_pred ECCCCcEEEEEecCC-C-------------------ceeEEeeCCCEEEEEC--C-------------------------
Q 019103 176 DQNNLNKLEEFTHQM-K-------------------DGWGLATDGKVLFGSD--G------------------------- 208 (346)
Q Consensus 176 D~~tl~~i~ti~~~~-p-------------------eGwGLt~Dg~~LyvSd--G------------------------- 208 (346)
|.++.+.......+. . .+..++|||++|+.+. +
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 999887665444321 1 2466899999876632 2
Q ss_pred -------CCeEEEEeCCCCcEEEEEEeccCCe-eeeeceeeEee-CCEEEEEe-c---CCCeEEEEeCCCCeEEEEEECC
Q 019103 209 -------SSMLYQIDPQTLKVIRKDIVRYKGR-EVRNLNELEFI-KGEVWANV-W---QTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 209 -------s~~l~vIDp~T~kvi~~I~V~~~G~-pv~~lNELE~~-~G~LyaNv-~---~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
..+|+++|.++.+....+....... .-..+..+.+. ||++++.. . ....|.++|+++|++...+...
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 1279999998887544443321000 01122234444 67644322 1 1246889999999987655320
Q ss_pred chhhhhhhccCCCCceeeEEEEeCCCCEEEEe-cCCC------CcEEEEE
Q 019103 276 NLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT-GKLW------PKLYEIN 318 (346)
Q Consensus 276 ~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT-GK~W------p~l~ev~ 318 (346)
. .+. .......++|+|+|+.|+++ +... ..||.+.
T Consensus 300 ~-------~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 300 S-------EAW-LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp C-------SSC-CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred c-------CCE-EeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 0 000 00012368999999988765 4332 3576665
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-05 Score=75.00 Aligned_cols=206 Identities=11% Similarity=-0.010 Sum_probs=131.5
Q ss_pred eeEE--EecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEE
Q 019103 108 QGLL--YAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 108 qGL~--~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
..+. +.+++.++.+.+ .+..|++||+.+++.+..+..+ ....-..++... +.+.++.-.++.+.++|..+.+.+
T Consensus 172 ~~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 172 VRMRAFVNEEKSLLVALT--NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp EEEEEEECSSCEEEEEEE--TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred eEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence 4444 346677777766 4569999999999998888653 111233445532 334444556789999999999999
Q ss_pred EEEecCCCce-eEE------eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCe---------------------ee
Q 019103 184 EEFTHQMKDG-WGL------ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGR---------------------EV 235 (346)
Q Consensus 184 ~ti~~~~peG-wGL------t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~---------------------pv 235 (346)
.++..+.... ..+ ++|++.|+.+..++.|.++|..+.+.+.++.-..... ..
T Consensus 250 ~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 329 (437)
T 3gre_A 250 RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSL 329 (437)
T ss_dssp EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSG
T ss_pred EEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccC
Confidence 9887531111 223 2456677777778899999999999888877432100 01
Q ss_pred eeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCc------------------------hhhhhhhccCCCCce
Q 019103 236 RNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPN------------------------LRERLVAAGYNGIDV 291 (346)
Q Consensus 236 ~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~------------------------l~~~~~~~~~~~~~v 291 (346)
..++.+.+.++..+++.-.++.|.+-|..+++.+..+.-.. ...........-.+.
T Consensus 330 ~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 409 (437)
T 3gre_A 330 NALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDI 409 (437)
T ss_dssp GGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCC
T ss_pred CceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccc
Confidence 12445667788877777778999999999999777664210 000000000001345
Q ss_pred eeEEEEeCC-CCEEEEecCCCCcEE
Q 019103 292 LNGIAWDSN-RNRIFVTGKLWPKLY 315 (346)
Q Consensus 292 lNGIA~d~~-~~~LfVTGK~Wp~l~ 315 (346)
.+.|++.++ ...+++||-..+.|.
T Consensus 410 I~~i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 410 INSISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp EEEEEEEESSSSEEEEEEETTSCEE
T ss_pred eeeEeeeccCCceEEEEEcCCceEE
Confidence 678888887 467788877776654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.9e-07 Score=83.15 Aligned_cols=189 Identities=8% Similarity=-0.044 Sum_probs=108.0
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc---EEEEe-ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCc-
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGK---VEAIN-QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN- 181 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk---v~~~~-~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~- 181 (346)
...+.|++++.++.+.+ .+..|++||+.+++ ..... ..........+..+++.|+... .++.+.++|.++.+
T Consensus 58 v~~~~~s~~~~~l~s~s--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCS--QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQEND 134 (377)
T ss_dssp EEEEEECTTTCCEEEEE--TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC-----
T ss_pred EEEEEEeCCCCEEEEEe--CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECCccc
Confidence 47899999998777766 45699999999987 22222 2233333322223345555444 57899999998876
Q ss_pred --EEEEEec--C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCc------------------EEEEEEeccCCeeeeec
Q 019103 182 --KLEEFTH--Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLK------------------VIRKDIVRYKGREVRNL 238 (346)
Q Consensus 182 --~i~ti~~--~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~k------------------vi~~I~V~~~G~pv~~l 238 (346)
.+..+.. . .-....+++|++.|+....++.|.++|..+.+ .+.++ .+..+ +
T Consensus 135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---v 208 (377)
T 3dwl_C 135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGW---V 208 (377)
T ss_dssp CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSS---E
T ss_pred ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCce---E
Confidence 3666653 2 12345577899988887778899999986433 22222 11112 2
Q ss_pred eeeEee-CCEEEEEecCCCeEEEEeCCCCeE----EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019103 239 NELEFI-KGEVWANVWQTDCIARISHEDGVV----LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 239 NELE~~-~G~LyaNv~~sn~I~vID~~TG~V----v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
+.+.+. +|+.+|..-.++.|.+.|..+++. +..+.. .......++|+|+++.|...+ .+.
T Consensus 209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~--~~~ 273 (377)
T 3dwl_C 209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKL-------------SQLPLRSLLWANESAIVAAGY--NYS 273 (377)
T ss_dssp EEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEEC-------------SSSCEEEEEEEETTEEEEEES--SSS
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecC-------------CCCceEEEEEcCCCCEEEEEc--CCc
Confidence 345554 566555555678999999999876 333322 123467899999987654443 344
Q ss_pred EEEEEE
Q 019103 314 LYEINL 319 (346)
Q Consensus 314 l~ev~l 319 (346)
+.....
T Consensus 274 ~~~~~~ 279 (377)
T 3dwl_C 274 PILLQG 279 (377)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 444433
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.51 E-value=6.5e-06 Score=74.48 Aligned_cols=208 Identities=11% Similarity=-0.010 Sum_probs=126.7
Q ss_pred EEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEEC-CCCcEEEEec--cCCCeeEEEEEEe-CCEEEEEEeeCC
Q 019103 96 VNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVAL-ETGKVEAINQ--MEGSYFGEGLTLL-GEKLFQVTWLQK 170 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl-~Tgkv~~~~~--l~~~~FgeGit~~-g~~LY~ltw~~~ 170 (346)
...+.|... ...+.+++++. ++.+.+ .+..|.+||+ .+++...... ...... .++.. ++.++. .-.++
T Consensus 50 ~~~~~~~~~--v~~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~v~--~l~~~~~~~l~s-~~~d~ 122 (342)
T 1yfq_A 50 LQSLRYKHP--LLCCNFIDNTDLQIYVGT--VQGEILKVDLIGSPSFQALTNNEANLGIC--RICKYGDDKLIA-ASWDG 122 (342)
T ss_dssp EEEEECSSC--EEEEEEEESSSEEEEEEE--TTSCEEEECSSSSSSEEECBSCCCCSCEE--EEEEETTTEEEE-EETTS
T ss_pred eeeeecCCc--eEEEEECCCCCcEEEEEc--CCCeEEEEEeccCCceEeccccCCCCceE--EEEeCCCCEEEE-EcCCC
Confidence 344456433 37899999888 666666 4569999999 9998733333 333333 34444 455554 44679
Q ss_pred EEEEEECCC---------CcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCC-CcEEEEEEeccCCeeeeecee
Q 019103 171 TGFIYDQNN---------LNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 171 ~v~V~D~~t---------l~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T-~kvi~~I~V~~~G~pv~~lNE 240 (346)
.+.++|..+ .+.+.++.++ ..-+.++...+.++++..++.|.++|..+ ++............+ ++.
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---i~~ 198 (342)
T 1yfq_A 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVK-NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ---IRD 198 (342)
T ss_dssp EEEEECHHHHTTBCEEEEESCSSSSSSC-CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSC---EEE
T ss_pred eEEEEcccccccccccccCCeeeEEeeC-CceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCc---eeE
Confidence 999999988 7777777754 34445555555577777788999999988 554222222111122 234
Q ss_pred eEee--CCEEEEEecCCCeEEEEeCCCC------eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 241 LEFI--KGEVWANVWQTDCIARISHEDG------VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 241 LE~~--~G~LyaNv~~sn~I~vID~~TG------~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
+.+. +|..++.....+.|.+.|.+++ +.+..+....... .+.......+.++|+|+++.|++.+ ...
T Consensus 199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~-~dg 273 (342)
T 1yfq_A 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL----KDTNLAYPVNSIEFSPRHKFLYTAG-SDG 273 (342)
T ss_dssp EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT----TCCSSCCCEEEEEECTTTCCEEEEE-TTS
T ss_pred EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc----cccccceeEEEEEEcCCCCEEEEec-CCc
Confidence 5555 4666665556788888777766 5555554321100 0001123578899999988776655 445
Q ss_pred cEEEEEE
Q 019103 313 KLYEINL 319 (346)
Q Consensus 313 ~l~ev~l 319 (346)
.|+-.++
T Consensus 274 ~i~vwd~ 280 (342)
T 1yfq_A 274 IISCWNL 280 (342)
T ss_dssp CEEEEET
T ss_pred eEEEEcC
Confidence 5554443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.7e-06 Score=79.66 Aligned_cols=186 Identities=12% Similarity=0.042 Sum_probs=121.0
Q ss_pred eeEEE---ecCCEEEEEcC-----------CCCCCeEEEEECC---CCcEEEEeccC----C-------Ce-eEEEEEEe
Q 019103 108 QGLLY---AENDTLFESTG-----------LYGRSSVRRVALE---TGKVEAINQME----G-------SY-FGEGLTLL 158 (346)
Q Consensus 108 qGL~~---~~d~~LyeStG-----------lyg~s~V~~iDl~---Tgkv~~~~~l~----~-------~~-FgeGit~~ 158 (346)
.||.+ +++++||+..- ..|.+.|.++|+. ||+++..+.|. . .+ ...+++.+
T Consensus 66 sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD 145 (334)
T 2p9w_A 66 SGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD 145 (334)
T ss_dssp EEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC
T ss_pred eEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC
Confidence 69999 68899988421 0246889999999 99988877763 1 33 36778887
Q ss_pred C-CEEEEEEeeC-CEEEEEECCCCcEEEEEecC--------CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019103 159 G-EKLFQVTWLQ-KTGFIYDQNNLNKLEEFTHQ--------MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 159 g-~~LY~ltw~~-~~v~V~D~~tl~~i~ti~~~--------~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
. +.+|++.-.. +.|+.+|++-.+ +..+... .+.|.+++|||+.|+++++..+|+.+|..+.. ...|++
T Consensus 146 ~~GnaYVt~s~~~~~I~rV~pdG~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv-~~~v~~ 223 (334)
T 2p9w_A 146 RDGNSYVAFALGMPAIARVSADGKT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY-AWPEPV 223 (334)
T ss_dssp TTSCEEEEEEESSCEEEEECTTSCC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS-CCCEEC
T ss_pred CCCCEEEeCCCCCCeEEEEeCCCCE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc-ceeecc
Confidence 5 6899998889 999999987543 3333211 24599999999999999998999999987431 113555
Q ss_pred ccCCe--eeeeceee-Ee-eCCEE-EEEecCCCeEEEEeCCCCe---EEEEEECCchhhhhhhccCCCCceeeEEEEe--
Q 019103 229 RYKGR--EVRNLNEL-EF-IKGEV-WANVWQTDCIARISHEDGV---VLGWVLLPNLRERLVAAGYNGIDVLNGIAWD-- 298 (346)
Q Consensus 229 ~~~G~--pv~~lNEL-E~-~~G~L-yaNv~~sn~I~vID~~TG~---Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d-- 298 (346)
...|. ....+.-| .. .+|++ +|+....+.+++.+.+.-+ ++++++. ...++|+|.+
T Consensus 224 ~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~sa~~~g~~~~--------------~~~~~g~tt~t~ 289 (334)
T 2p9w_A 224 KINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWKSANIKKTKRS--------------ELQNSGFTAVAD 289 (334)
T ss_dssp EESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTSEEEEEEEECG--------------GGGSSCEEEEEE
T ss_pred cccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCcceeEEeeeecC--------------ccccCceeEEEE
Confidence 31121 11122222 22 37775 8877665556555554433 3333321 1114677776
Q ss_pred ---CCCCEEEEecC
Q 019103 299 ---SNRNRIFVTGK 309 (346)
Q Consensus 299 ---~~~~~LfVTGK 309 (346)
..++++||...
T Consensus 290 ~~~~~~~~iYvv~~ 303 (334)
T 2p9w_A 290 YYQGSEQGLYAVSA 303 (334)
T ss_dssp EEETTEEEEEEEEC
T ss_pred eccccCCeEEEEee
Confidence 56688898753
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-05 Score=71.75 Aligned_cols=210 Identities=10% Similarity=-0.013 Sum_probs=124.0
Q ss_pred eEEEEEEecCCCCcceeEEEecC--CEEEEEcCCCCCCeEEEEECCCCcE--EEEecc-CCCeeEEEEEEeC-CEEEEEE
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETGKV--EAINQM-EGSYFGEGLTLLG-EKLFQVT 166 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d--~~LyeStGlyg~s~V~~iDl~Tgkv--~~~~~l-~~~~FgeGit~~g-~~LY~lt 166 (346)
.+.+.++.. ...-...+.++++ +.++.+.+ .+..|++||+.+++. +....- ........+...+ +.++++.
T Consensus 45 ~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 121 (379)
T 3jrp_A 45 HKLIDTLTG-HEGPVWRVDWAHPKFGTILASCS--YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 121 (379)
T ss_dssp EEEEEEECC-CSSCEEEEEECCGGGCSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred ceeeeEecC-CCCcEEEEEeCCCCCCCEEEEec--cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEe
Confidence 345555542 1233378999865 67777766 456999999999974 333332 2333333233331 3455555
Q ss_pred eeCCEEEEEECCCCcEEEEEec---C-CCceeEEee-------------CCCEEEEECCCCeEEEEeCCCCcEEEEEEe-
Q 019103 167 WLQKTGFIYDQNNLNKLEEFTH---Q-MKDGWGLAT-------------DGKVLFGSDGSSMLYQIDPQTLKVIRKDIV- 228 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~---~-~peGwGLt~-------------Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V- 228 (346)
-.++.+.++|..+.+....+.. . .-....+++ |++.+++...++.|.++|..+.+....+..
T Consensus 122 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 201 (379)
T 3jrp_A 122 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 201 (379)
T ss_dssp ETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred cCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEE
Confidence 6789999999988754443322 1 112334556 688888877788999999877654322221
Q ss_pred -ccCCeeeeeceeeEee-C---CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019103 229 -RYKGREVRNLNELEFI-K---GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 229 -~~~G~pv~~lNELE~~-~---G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
..+..+ ++.+.+. + +.+++..-.+..|.+.|..+++......+.... ........++|+|+++.
T Consensus 202 ~~~h~~~---v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~ 270 (379)
T 3jrp_A 202 LEGHSDW---VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEE--------KFPDVLWRASWSLSGNV 270 (379)
T ss_dssp ECCCSSC---EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS--------CCSSCEEEEEECSSSCC
T ss_pred EecccCc---EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccc--------cCCCcEEEEEEcCCCCE
Confidence 112222 2345555 4 677777777888999999887521111110110 12345788999999998
Q ss_pred EEEecCCCCcEEEE
Q 019103 304 IFVTGKLWPKLYEI 317 (346)
Q Consensus 304 LfVTGK~Wp~l~ev 317 (346)
|++++. .+.++--
T Consensus 271 l~~~~~-dg~i~iw 283 (379)
T 3jrp_A 271 LALSGG-DNKVTLW 283 (379)
T ss_dssp EEEEES-SSSEEEE
T ss_pred EEEecC-CCcEEEE
Confidence 887765 3444333
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.1e-06 Score=75.83 Aligned_cols=186 Identities=7% Similarity=-0.053 Sum_probs=119.5
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc----EEEEeccCCCeeEEEEEEeCC-EEEEEEeeCCEEEEEEC-CC
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGK----VEAINQMEGSYFGEGLTLLGE-KLFQVTWLQKTGFIYDQ-NN 179 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk----v~~~~~l~~~~FgeGit~~g~-~LY~ltw~~~~v~V~D~-~t 179 (346)
....+.|++++.++.+++ .+..|++||+.+++ ...............+..+++ .|+... .++.+.++|. ++
T Consensus 13 ~v~~~~~s~~~~~l~~~~--~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~ 89 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITS--WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-VQGEILKVDLIGS 89 (342)
T ss_dssp CEEEEEEEGGGTEEEEEE--TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-TTSCEEEECSSSS
T ss_pred cEEEEEEcCCCCEEEEEc--CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc-CCCeEEEEEeccC
Confidence 347999999887666666 45699999999988 555444555555555555666 565554 6789999999 87
Q ss_pred CcEEEEEe---cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCC---------CcEEEEEEeccCCeeeeeceeeEeeCC
Q 019103 180 LNKLEEFT---HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQT---------LKVIRKDIVRYKGREVRNLNELEFIKG 246 (346)
Q Consensus 180 l~~i~ti~---~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T---------~kvi~~I~V~~~G~pv~~lNELE~~~G 246 (346)
.+. .++. +. .-....+++ ++.|+.+..++.|.++|..+ .+.+.++.. .. .+..+.+..+
T Consensus 90 ~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~---~v~~~~~~~~ 161 (342)
T 1yfq_A 90 PSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV---KN---KIFTMDTNSS 161 (342)
T ss_dssp SSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS---CC---CEEEEEECSS
T ss_pred Cce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEee---CC---ceEEEEecCC
Confidence 766 4443 22 113344567 88888877889999999887 544433331 11 2234666666
Q ss_pred EEEEEecCCCeEEEEeCCC-CeEE-EEEECCchhhhhhhccCCCCceeeEEEEeC-CCCEEEEecCCCCcEEE
Q 019103 247 EVWANVWQTDCIARISHED-GVVL-GWVLLPNLRERLVAAGYNGIDVLNGIAWDS-NRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~T-G~Vv-~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~LfVTGK~Wp~l~e 316 (346)
.+++. -..+.|.+.|..+ ++.. ..... ........|+|+| +++.+++++. .+.+.-
T Consensus 162 ~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~------------~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i 220 (342)
T 1yfq_A 162 RLIVG-MNNSQVQWFRLPLCEDDNGTIEES------------GLKYQIRDVALLPKEQEGYACSSI-DGRVAV 220 (342)
T ss_dssp EEEEE-ESTTEEEEEESSCCTTCCCEEEEC------------SCSSCEEEEEECSGGGCEEEEEET-TSEEEE
T ss_pred cEEEE-eCCCeEEEEECCccccccceeeec------------CCCCceeEEEECCCCCCEEEEEec-CCcEEE
Confidence 65544 3577899999988 6532 11211 1123468899999 8877666554 454443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.6e-05 Score=68.80 Aligned_cols=123 Identities=14% Similarity=0.103 Sum_probs=85.2
Q ss_pred CCcceeEEEecC---CEEEEEcCCCCCCeEEEEECCC-CcEE-EEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEEC
Q 019103 104 RAFTQGLLYAEN---DTLFESTGLYGRSSVRRVALET-GKVE-AINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 104 ~~FTqGL~~~~d---~~LyeStGlyg~s~V~~iDl~T-gkv~-~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~ 177 (346)
......+.|+++ |.++.+++ .+..|++||+.+ ++.. ....- ........+..+++.|+ +.-.++.+.++|.
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGS--WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDKTAKMWDL 115 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEE--TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE-EEETTSEEEEEET
T ss_pred CCceEEEEEcCCCCCceEEEEEC--CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE-EEcCCCcEEEEEc
Confidence 334479999998 57777766 456999999998 6554 33332 23333322233345555 4456799999999
Q ss_pred CCCcEEEEEecCC-CceeEE--eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEec
Q 019103 178 NNLNKLEEFTHQM-KDGWGL--ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 178 ~tl~~i~ti~~~~-peGwGL--t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~ 229 (346)
++.+.+....+.. -....+ ++|++.|+.+..++.|.++|..+.+.+.++...
T Consensus 116 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 116 SSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp TTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred CCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 9999888777641 233344 667888888777899999999999888777654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-05 Score=85.15 Aligned_cols=200 Identities=8% Similarity=-0.009 Sum_probs=136.5
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCC-EEEEEEeeCCE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGE-KLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~-~LY~ltw~~~~ 171 (346)
+.+.++.. .......+.|++|+.++.+++ .+..|++||+.+|+.+....-.. ......+...++ .+.++.-.++.
T Consensus 648 ~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 648 EKLLDIKA-HEDEVLCCAFSSDDSYIATCS--ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp CEEEEECC-CSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CEEEEecc-CCCCEEEEEEecCCCEEEEEe--CCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence 34555552 233447999999998777777 55699999999999988876433 232322223324 34555667889
Q ss_pred EEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCe----ee----eeceee
Q 019103 172 GFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGR----EV----RNLNEL 241 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~----pv----~~lNEL 241 (346)
+.++|..+.+.+.++... .-....+++|++.|++...++.|.++|..+.+...++.+...-. +. ..+.-+
T Consensus 725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1249)
T 3sfz_A 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804 (1249)
T ss_dssp EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence 999999999999888642 12445578899999888778899999999999988887643100 00 011112
Q ss_pred Eee-CC-EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 242 EFI-KG-EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 242 E~~-~G-~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
.+. +| .+.+.. .+.|.+.|..+++.+..+.... ......++|+|+++.+++++..
T Consensus 805 ~~s~dg~~l~~~~--~~~v~~~d~~~~~~~~~~~~~~------------~~~v~~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 805 SWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHTGH------------HSTIQYCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp CBCTTSSEEEEEE--TTEEEEEETTTCCEEEEEECSS------------SSCCCEEEECSSTTEEEEECSS
T ss_pred EECCCCCEEEEEc--CCcEEEEEecCCCceeEEcCCC------------CCceEEEEEcCCCCEEEEEeCC
Confidence 232 45 444443 7899999999999988885411 1245679999999887776543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.9e-05 Score=66.44 Aligned_cols=200 Identities=9% Similarity=-0.033 Sum_probs=126.7
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCC
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
.++.+.++... ......+.+ +++.++.+.+ .+..|++||+.+++........ .......+..+++.|+. .-.++
T Consensus 7 ~~~~~~~l~~h-~~~v~~~~~-~~~~~l~s~~--~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg 81 (313)
T 3odt_A 7 GYQLSATLKGH-DQDVRDVVA-VDDSKVASVS--RDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLF-GGKDT 81 (313)
T ss_dssp CCEEEEEECCC-SSCEEEEEE-EETTEEEEEE--TTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEE-EETTS
T ss_pred cHHHHHHhhCC-CCCcEEEEe-cCCCEEEEEE--cCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEE-ecCCC
Confidence 46777777532 333478999 6776566666 4569999999999887777653 33333333334454544 45678
Q ss_pred EEEEEECCCC---cEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--C
Q 019103 171 TGFIYDQNNL---NKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--K 245 (346)
Q Consensus 171 ~v~V~D~~tl---~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~ 245 (346)
.+.++|..+. +.+.++......-..++.+++.|+++..++.|.++| +.+.+..+.... .++. .+.+. +
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~--~~v~---~~~~~~~~ 154 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHN--ASVW---DAKVVSFS 154 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCS--SCEE---EEEEEETT
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCC--Ccee---EEEEccCC
Confidence 8998887654 455555432234456788899998888889999999 556665555432 2322 23333 4
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 246 GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+..++..-.+..|.+.| .++.+..+.. ......+.++++|++. +++|-..+.++-..+
T Consensus 155 ~~~l~~~~~d~~i~i~d--~~~~~~~~~~------------~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~ 212 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQ--NDKVIKTFSG------------IHNDVVRHLAVVDDGH--FISCSNDGLIKLVDM 212 (313)
T ss_dssp TTEEEEEETTSCEEEEE--TTEEEEEECS------------SCSSCEEEEEEEETTE--EEEEETTSEEEEEET
T ss_pred CCEEEEEECCCCEEEEe--cCceEEEEec------------cCcccEEEEEEcCCCe--EEEccCCCeEEEEEC
Confidence 54445455678898998 5555555532 1123568899999887 556666666655544
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.6e-05 Score=72.91 Aligned_cols=183 Identities=10% Similarity=-0.014 Sum_probs=123.1
Q ss_pred ecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCc
Q 019103 113 AENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD 192 (346)
Q Consensus 113 ~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~pe 192 (346)
..|+..+++.+ .+..|++||+.+++......-.... -..++.+++.| ++.-.++.+.++|.++.+.+.++......
T Consensus 140 ~~d~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 215 (435)
T 1p22_A 140 QYDDQKIVSGL--RDNTIKIWDKNTLECKRILTGHTGS-VLCLQYDERVI-ITGSSDSTVRVWDVNTGEMLNTLIHHCEA 215 (435)
T ss_dssp ECCSSEEEEEE--SSSCEEEEESSSCCEEEEECCCSSC-EEEEECCSSEE-EEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred EECCCEEEEEe--CCCeEEEEeCCCCeEEEEEcCCCCc-EEEEEECCCEE-EEEcCCCeEEEEECCCCcEEEEEcCCCCc
Confidence 34566666656 4569999999999988877643322 23456655544 44456799999999999999998754334
Q ss_pred eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEec-cCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEE
Q 019103 193 GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR-YKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGW 271 (346)
Q Consensus 193 GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~-~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~ 271 (346)
-..++.+++.+++...++.|.++|..+.+......+- .+..+ ++.+.+.+..+++.. .++.|.+.|..+++.+..
T Consensus 216 v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~ 291 (435)
T 1p22_A 216 VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA---VNVVDFDDKYIVSAS-GDRTIKVWNTSTCEFVRT 291 (435)
T ss_dssp EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC---EEEEEEETTEEEEEE-TTSEEEEEETTTCCEEEE
T ss_pred EEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCc---EEEEEeCCCEEEEEe-CCCeEEEEECCcCcEEEE
Confidence 4567888888888777889999999887765432221 12222 345666555565554 588999999999999988
Q ss_pred EECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 272 VLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 272 I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+.-. ......++++ ++ ++++|-..+.|.-..+
T Consensus 292 ~~~~-------------~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 292 LNGH-------------KRGIACLQYR--DR-LVVSGSSDNTIRLWDI 323 (435)
T ss_dssp EECC-------------SSCEEEEEEE--TT-EEEEEETTSCEEEEET
T ss_pred EcCC-------------CCcEEEEEeC--CC-EEEEEeCCCeEEEEEC
Confidence 8531 1234678885 33 4555555566555443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.6e-05 Score=72.70 Aligned_cols=210 Identities=11% Similarity=0.100 Sum_probs=131.2
Q ss_pred eeEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC------------CeeEEE----
Q 019103 92 TIQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG------------SYFGEG---- 154 (346)
Q Consensus 92 t~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~------------~~FgeG---- 154 (346)
+....+++. | ......+.|+|++.++.|++ .+..|++||+.+++....+.... ..++-|
T Consensus 55 ~~~~~~~l~gH--~~~V~~~~~sp~~~~l~s~s--~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 55 DLVCCRTLQGH--SGKVYSLDWTPEKNWIVSAS--QDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDS 130 (380)
T ss_dssp CCEEEEEECCC--SSCEEEEEECTTSSCEEEEE--TTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSS
T ss_pred eeEEeeccccc--ccEEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCC
Confidence 355666665 4 33357999999998888887 55699999999998776654321 111100
Q ss_pred --------------------------------EEE--eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCC-----CceeE
Q 019103 155 --------------------------------LTL--LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-----KDGWG 195 (346)
Q Consensus 155 --------------------------------it~--~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~-----peGwG 195 (346)
+.. .++..+++.-.++.+.++|..+.+.+..+.... ..-..
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 000 112223344557889999999999888874321 12223
Q ss_pred Ee--e-CCCEEEEECCCCeEEEEeCCC-CcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEE
Q 019103 196 LA--T-DGKVLFGSDGSSMLYQIDPQT-LKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLG 270 (346)
Q Consensus 196 Lt--~-Dg~~LyvSdGs~~l~vIDp~T-~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~ 270 (346)
++ + +++.++....+.+|.++|..+ .+.+.++.-.. . .++.+.+. +|..+++.-.+.+|.+.|..+|+.+.
T Consensus 211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~--~---~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE--G---DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS--S---CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred EEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC--C---CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 33 3 566666666688999999873 34444332211 1 23456665 67777777788999999999999988
Q ss_pred EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 271 WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 271 ~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
.+....-.. .........+||+|+++.|+..+ ..+.++--
T Consensus 286 ~~~~~~~~~------~~~~~~v~~~~~s~~g~~l~~g~-~dg~i~vw 325 (380)
T 3iz6_a 286 VYNREPDRN------DNELPIVTSVAFSISGRLLFAGY-SNGDCYVW 325 (380)
T ss_dssp EECCCCSSS------CCSSCSCSEEEECSSSSEEEEEC-TTSCEEEE
T ss_pred Eeccccccc------ccccCceEEEEECCCCCEEEEEE-CCCCEEEE
Confidence 885421110 01122467899999988776654 44555443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.47 E-value=9.8e-06 Score=77.84 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=121.5
Q ss_pred eeEEEec----CCEEEEEcCCC---C--CCeEEEEECCCC--cEEEE--e--ccC----CCeeEEEEEEe-CCEEEEEEe
Q 019103 108 QGLLYAE----NDTLFESTGLY---G--RSSVRRVALETG--KVEAI--N--QME----GSYFGEGLTLL-GEKLFQVTW 167 (346)
Q Consensus 108 qGL~~~~----d~~LyeStGly---g--~s~V~~iDl~Tg--kv~~~--~--~l~----~~~FgeGit~~-g~~LY~ltw 167 (346)
.||+++| ++.||++.... | .++|.+++++.+ ++... + .++ ...++.+|+.. ++.||+++.
T Consensus 69 ~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 69 LDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred eeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 6999998 47899884311 1 458999887643 32211 1 222 23567778885 369999985
Q ss_pred e-------------CCEEEEEECCCC------------cEEEEEecCC--CceeEEeeCCCEEEEEC-C---CCeEEEEe
Q 019103 168 L-------------QKTGFIYDQNNL------------NKLEEFTHQM--KDGWGLATDGKVLFGSD-G---SSMLYQID 216 (346)
Q Consensus 168 ~-------------~~~v~V~D~~tl------------~~i~ti~~~~--peGwGLt~Dg~~LyvSd-G---s~~l~vID 216 (346)
. .++|+.+|++.. .....+.++. |.|++++++.+.||++| | .++|..|.
T Consensus 149 d~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~ 228 (353)
T 2g8s_A 149 ENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQ 228 (353)
T ss_dssp CTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCC
T ss_pred CCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEec
Confidence 5 358999998642 1233445553 44555555578999998 5 34777765
Q ss_pred CCCCc----EEE-------EEE----eccCC--eeee------eceeeEee--------CCEEEEEecCCCeEEEEeCCC
Q 019103 217 PQTLK----VIR-------KDI----VRYKG--REVR------NLNELEFI--------KGEVWANVWQTDCIARISHED 265 (346)
Q Consensus 217 p~T~k----vi~-------~I~----V~~~G--~pv~------~lNELE~~--------~G~LyaNv~~sn~I~vID~~T 265 (346)
+...= ... .+. -...+ .|+. .+.-+.+. +|.+|++.+..+.|.+++.+.
T Consensus 229 ~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~ 308 (353)
T 2g8s_A 229 KGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG 308 (353)
T ss_dssp TTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET
T ss_pred cCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC
Confidence 42210 000 000 00000 0110 12224443 589999999999999999998
Q ss_pred CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE-ecCCCCcEEEEE
Q 019103 266 GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV-TGKLWPKLYEIN 318 (346)
Q Consensus 266 G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV-TGK~Wp~l~ev~ 318 (346)
++++..-.+ +.. ...-|.+|+++|||. ||| |...-++||+|.
T Consensus 309 ~~~~~~~~~--~~~--------~~~rp~~v~~~pdG~-lyv~td~~~g~I~ri~ 351 (353)
T 2g8s_A 309 DKVTEDGRI--LTD--------RGQRIRDVRTGPDGY-LYVLTDESSGELLKVS 351 (353)
T ss_dssp TEEEEEEEE--SGG--------GCCCEEEEEECTTSC-EEEEECSTTEEEEEEE
T ss_pred CeEeeeEEc--ccC--------CCCceeEEEECCCCc-EEEEEeCCCCEEEEEe
Confidence 887766533 111 122589999999987 666 566678899885
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-05 Score=82.13 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=111.8
Q ss_pred eEEEecC-CEEEEEcCCC------------C----CCeEEEEECCCCcEEEEeccCC----------CeeEEEEEEeCC-
Q 019103 109 GLLYAEN-DTLFESTGLY------------G----RSSVRRVALETGKVEAINQMEG----------SYFGEGLTLLGE- 160 (346)
Q Consensus 109 GL~~~~d-~~LyeStGly------------g----~s~V~~iDl~Tgkv~~~~~l~~----------~~FgeGit~~g~- 160 (346)
.++++++ +.+|++++.- | .+.|..+|++||+++=+.++.+ .+....+..+|+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 3688764 5899997621 0 1369999999999988876532 122223444443
Q ss_pred -EEEEEEeeCCEEEEEECCCCcEEEEEecCC-C-------------------------------------ceeEEeeCCC
Q 019103 161 -KLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-K-------------------------------------DGWGLATDGK 201 (346)
Q Consensus 161 -~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~-p-------------------------------------eGwGLt~Dg~ 201 (346)
.+++..-+++.++++|++|++++.+++... + .+.+++++.+
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g 393 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG 393 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence 233344478999999999999996655320 0 1145777888
Q ss_pred EEEEE-C---------------------C--------------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeC
Q 019103 202 VLFGS-D---------------------G--------------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIK 245 (346)
Q Consensus 202 ~LyvS-d---------------------G--------------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~ 245 (346)
.+|+. + | ++.|+.+|+.|++++=+++.+.. .. ---+...+
T Consensus 394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~---~~-~~~~~t~g 469 (668)
T 1kv9_A 394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH---WN-GGTLSTAG 469 (668)
T ss_dssp EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS---CC-CCEEEETT
T ss_pred EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC---Cc-CceeEeCC
Confidence 99982 1 1 26799999999999888877542 10 01244568
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECC
Q 019103 246 GEVWANVWQTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
|.||+.. .+..|.++|.+||+++..+.++
T Consensus 470 g~vf~g~-~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 470 NLVFQGT-AAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp TEEEEEC-TTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEC-CcccchhhhhhcChhheEecCC
Confidence 8999874 5889999999999999999873
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=98.45 E-value=4.2e-05 Score=77.37 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=127.3
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc--------CCCeeEEEEEEeCCEEEEE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM--------EGSYFGEGLTLLGEKLFQV 165 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l--------~~~~FgeGit~~g~~LY~l 165 (346)
+.+.++.- .......+.|+|||.++.+++ .+..|++||..+|+.+..+.- ........+.++++.| ++
T Consensus 181 ~~~~~l~~-H~~~V~~v~fspdg~~las~s--~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l-~s 256 (611)
T 1nr0_A 181 KFKSTFGE-HTKFVHSVRYNPDGSLFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-AS 256 (611)
T ss_dssp EEEEEECC-CSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE-EE
T ss_pred eEeeeecc-ccCceEEEEECCCCCEEEEEE--CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEE-EE
Confidence 44555542 344568999999999888888 567999999999998777632 2233333333344544 44
Q ss_pred EeeCCEEEEEECCCCcEEEEEecC---CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE
Q 019103 166 TWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~~i~ti~~~---~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE 242 (346)
.-.++.+.++|..+++.+.+++.+ ....+++..+++.+.....++.+.++|+++.+....+.- +..+ ++.+.
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g--h~~~---v~~l~ 331 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG--HNKA---ITALS 331 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC--CSSC---EEEEE
T ss_pred EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC--CCCC---EEEEE
Confidence 556899999999999999999753 123456777888888776788999999998875543321 2222 33455
Q ss_pred ee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC
Q 019103 243 FI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN 302 (346)
Q Consensus 243 ~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 302 (346)
+. +|+..++.-.++.|.+-|..+++....+.- .-.....++++++++.
T Consensus 332 ~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~------------~h~~~v~~~~~s~~~~ 380 (611)
T 1nr0_A 332 SSADGKTLFSADAEGHINSWDISTGISNRVFPD------------VHATMITGIKTTSKGD 380 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEECSSC------------SCSSCEEEEEECTTSC
T ss_pred EeCCCCEEEEEeCCCcEEEEECCCCceeeeccc------------CCcceEEEEEECCCCc
Confidence 54 565555555688999999999987543210 0123567899997653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.8e-06 Score=80.22 Aligned_cols=181 Identities=14% Similarity=0.142 Sum_probs=115.1
Q ss_pred EEEEcCCCCCCeEEEE--ECCCCcEEEEe----ccC---CCeeEEEEEE--e--CCEEEEE-EeeCCEEEEEEC------
Q 019103 118 LFESTGLYGRSSVRRV--ALETGKVEAIN----QME---GSYFGEGLTL--L--GEKLFQV-TWLQKTGFIYDQ------ 177 (346)
Q Consensus 118 LyeStGlyg~s~V~~i--Dl~Tgkv~~~~----~l~---~~~FgeGit~--~--g~~LY~l-tw~~~~v~V~D~------ 177 (346)
+|.|.-..|.++|++| |++++++.... +++ ..+ .|+++ . .+++|+. +-+++.+..|+.
T Consensus 89 a~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~p--yGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g 166 (355)
T 3amr_A 89 AAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEV--YGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG 166 (355)
T ss_dssp EEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSC--CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS
T ss_pred EEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCe--eEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC
Confidence 5666552227899999 66777743331 221 344 45666 3 3545433 556688887665
Q ss_pred -CCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCC-----CCcEEEEEEeccCCeeeeeceeeEee--C---
Q 019103 178 -NNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQ-----TLKVIRKDIVRYKGREVRNLNELEFI--K--- 245 (346)
Q Consensus 178 -~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~-----T~kvi~~I~V~~~G~pv~~lNELE~~--~--- 245 (346)
-+.+++++|+.+ .+||..+.+..++||+++.+.-|+.+|++ +.+++..+..+. -..-..-|... .
T Consensus 167 ~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~---l~aDvEGLai~~~~~g~ 243 (355)
T 3amr_A 167 YISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH---LTRDIEGLTIYYAADGK 243 (355)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSS---BCSCEEEEEEEECGGGC
T ss_pred cccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCc---cccCcceEEEEecCCCC
Confidence 355888999986 58999999999999999987789999954 366665553321 11011114332 2
Q ss_pred CEEEEEecCCCeEEEEeCC-CCeEEEEEECCchhh--hhhh------ccCCCC-ceeeEEEEeCCCCE
Q 019103 246 GEVWANVWQTDCIARISHE-DGVVLGWVLLPNLRE--RLVA------AGYNGI-DVLNGIAWDSNRNR 303 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~-TG~Vv~~I~l~~l~~--~~~~------~~~~~~-~vlNGIA~d~~~~~ 303 (346)
|+|+|.+...|...++|.+ +.+.++.+.+.+-.. ...+ ...+.+ ..|+|+.+..|+..
T Consensus 244 gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~~~~idgv~eTDG~~v~~~~lG~~fP~Gl~V~qDg~n 311 (355)
T 3amr_A 244 GYLMASSQGNSSYAIYDRQGKNKYVADFRITDGPETDGTSDTDGIDVLGFGLGPEYPFGIFVAQDGEN 311 (355)
T ss_dssp EEEEEEEGGGTEEEEEESSTTCCEEEEEEECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESSC
T ss_pred EEEEEEcCCCCEEEEEECCCCCcEEEEEEecCCCCceeeeccCcceEEccccCCCCCCcEEEEecCCc
Confidence 5899999999999999997 899999996532110 0000 011222 36777777776643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.43 E-value=3.9e-05 Score=71.19 Aligned_cols=206 Identities=11% Similarity=0.047 Sum_probs=119.9
Q ss_pred EEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCC-----------E
Q 019103 95 VVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGE-----------K 161 (346)
Q Consensus 95 Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~-----------~ 161 (346)
.+.++. |. .....+.|+|++..+.+++ .+..|++||+........... .....-..+....+ .
T Consensus 110 ~~~~~~~h~--~~v~~v~~sp~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 185 (343)
T 2xzm_R 110 TYKRFVGHQ--SEVYSVAFSPDNRQILSAG--AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAP 185 (343)
T ss_dssp EEEEEECCC--SCEEEEEECSSTTEEEEEE--TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCC
T ss_pred EEEEEcCCC--CcEEEEEECCCCCEEEEEc--CCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCC
Confidence 455554 43 3347899999998777777 556999999985433222211 11111222333221 3
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCC-CcEEEEEEeccCCeeeeec
Q 019103 162 LFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQT-LKVIRKDIVRYKGREVRNL 238 (346)
Q Consensus 162 LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T-~kvi~~I~V~~~G~pv~~l 238 (346)
++++.-.++.+.++| .+.+...++... .-....+++||+.|.....++.|.++|..+ ......... +.+ +
T Consensus 186 ~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~---~~~---v 258 (343)
T 2xzm_R 186 YFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA---GST---I 258 (343)
T ss_dssp EEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC---SSC---E
T ss_pred EEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC---CCc---E
Confidence 455556689999999 456666666532 123455788999998877789999999844 333333322 122 3
Q ss_pred eeeEee-CCEEEEEecCCCeEEEEeCCCCeEEE--EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 239 NELEFI-KGEVWANVWQTDCIARISHEDGVVLG--WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 239 NELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~--~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
+.+.+. ++.+.+ .-.++.|.+.|..+++... ++....+...... .......+.+||+|+++.|+..+ ....+.
T Consensus 259 ~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp~g~~l~sg~-~Dg~v~ 334 (343)
T 2xzm_R 259 NQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ--KGKNPQCTSLAWNALGKKLFAGF-TDGVIR 334 (343)
T ss_dssp EEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTB--CCSCCCEEEEEECSSSCCEEEEE-TTSEEE
T ss_pred EEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhh--cCCCCceEEEEECCCCCeEEEec-CCceEE
Confidence 456565 444443 3346779999999887654 3322111110000 01123468899999999876654 445443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=5.4e-06 Score=79.89 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=95.9
Q ss_pred EEEEEEe-CCEEEEEEeeCCEEEEEECCCCc-EEEEEec-----CCCceeEEeeC---CCEEEEECC----C----CeEE
Q 019103 152 GEGLTLL-GEKLFQVTWLQKTGFIYDQNNLN-KLEEFTH-----QMKDGWGLATD---GKVLFGSDG----S----SMLY 213 (346)
Q Consensus 152 geGit~~-g~~LY~ltw~~~~v~V~D~~tl~-~i~ti~~-----~~peGwGLt~D---g~~LyvSdG----s----~~l~ 213 (346)
+++++.. +++||++... ++|+++|. +.+ .+..+++ ..+.|.++++| +++||+++. . +.|+
T Consensus 31 P~~ia~~pdG~l~V~e~~-g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTERP-GRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp EEEEEEEETTEEEEEETT-TEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CeEEEEcCCCeEEEEeCC-CEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 5677765 4689998765 99999985 443 4444432 13677778888 889999874 2 7899
Q ss_pred EEeCCCC--cEEE-EEEec-cCCeeeeeceeeEee-CCEEEEEecC-------------CCeEEEEeCCCCeEEEEEECC
Q 019103 214 QIDPQTL--KVIR-KDIVR-YKGREVRNLNELEFI-KGEVWANVWQ-------------TDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 214 vIDp~T~--kvi~-~I~V~-~~G~pv~~lNELE~~-~G~LyaNv~~-------------sn~I~vID~~TG~Vv~~I~l~ 275 (346)
.+++... ++.. ++.+. ..+...++.+.|.+. ||+||++.-. ...|.+||++ |++ .-.
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~----p~~ 183 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRP----PAD 183 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCC----CTT
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCC----CCC
Confidence 9987653 2211 11111 111223455667776 7899998642 2478888886 331 000
Q ss_pred ch--hhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 276 NL--RERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 276 ~l--~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+- ...+.. .....|+|||+||++++||++.-.....-||.+.
T Consensus 184 npf~~~~i~a---~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i 227 (354)
T 3a9g_A 184 NPFPNSPIWS---YGHRNPQGIDWHRASGVMVATEHGPVGHDEVNII 227 (354)
T ss_dssp SSSTTCCEEE---ECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEE
T ss_pred CCCCCCcEEE---EccCCcceEEEeCCCCCEEEEecCCCCCcEEEEe
Confidence 00 000000 0112579999999888899987666555555543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00014 Score=64.35 Aligned_cols=167 Identities=8% Similarity=-0.015 Sum_probs=104.0
Q ss_pred eEEEEEEecCCCCcceeEEEec--CCEEEEEcCCCCCCeEEEEECCCCc---------EEEEecc-CCCeeEEEEEEeC-
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAE--NDTLFESTGLYGRSSVRRVALETGK---------VEAINQM-EGSYFGEGLTLLG- 159 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~--d~~LyeStGlyg~s~V~~iDl~Tgk---------v~~~~~l-~~~~FgeGit~~g- 159 (346)
.+.+.++.. .......+.|++ |+.++.+.+ .+..|++||+.+++ ......- .... ..++...
T Consensus 47 ~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~ 121 (351)
T 3f3f_A 47 WELSDSWRA-HDSSIVAIDWASPEYGRIIASAS--YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSL--YSVKFAPA 121 (351)
T ss_dssp EEEEEEEEC-CSSCEEEEEECCGGGCSEEEEEE--TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCE--EEEEECCG
T ss_pred ceecceecc-CCCcEEEEEEcCCCCCCEEEEEc--CCCeEEEEecCCCcccccccCcceeeeecccCCce--eEEEEcCC
Confidence 345666653 233347999987 577777766 45699999999873 3444432 2333 3344432
Q ss_pred --CEEEEEEeeCCEEEEEECCCCcEEEEEec------------C---CCceeEEeeC---CCEEEEECCCCeEEEEeCCC
Q 019103 160 --EKLFQVTWLQKTGFIYDQNNLNKLEEFTH------------Q---MKDGWGLATD---GKVLFGSDGSSMLYQIDPQT 219 (346)
Q Consensus 160 --~~LY~ltw~~~~v~V~D~~tl~~i~ti~~------------~---~peGwGLt~D---g~~LyvSdGs~~l~vIDp~T 219 (346)
+.++++.-.++.+.++|..+.+.+.++.. + ......++|+ ++.++++..++.+.+.+..+
T Consensus 122 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 201 (351)
T 3f3f_A 122 HLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD 201 (351)
T ss_dssp GGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT
T ss_pred CCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC
Confidence 33444555789999999988877665542 1 1133445565 78888877777887777777
Q ss_pred CcEEEEEEeccCCeeeeeceeeEee-CC----EEEEEecCCCeEEEEeCCCCe
Q 019103 220 LKVIRKDIVRYKGREVRNLNELEFI-KG----EVWANVWQTDCIARISHEDGV 267 (346)
Q Consensus 220 ~kvi~~I~V~~~G~pv~~lNELE~~-~G----~LyaNv~~sn~I~vID~~TG~ 267 (346)
.+.........+..++ +.+.+. +| .+++..-.++.|.+.|..++.
T Consensus 202 ~~~~~~~~~~~h~~~i---~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 202 GKLHVAAKLPGHKSLI---RSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp SCEEEEEECCCCCSCE---EEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred CceeeeeecCCCCcce---eEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence 7654333333222233 345555 34 777777778889999988763
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=6e-06 Score=88.98 Aligned_cols=179 Identities=11% Similarity=-0.005 Sum_probs=114.2
Q ss_pred cceeEEEe-cCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEeeCCEEE-EEECCCCc
Q 019103 106 FTQGLLYA-ENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGF-IYDQNNLN 181 (346)
Q Consensus 106 FTqGL~~~-~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~~~~v~-V~D~~tl~ 181 (346)
....+.++ |||+ |..+. ...|..+|..+++.......+. .......+ +|+.|+.+.. ++.++ ++|.++.+
T Consensus 297 ~v~~~~~S~pdG~~la~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS----RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGK 370 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE----TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCC
T ss_pred ccceeeecCCCCCEEEEEE----cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCC
Confidence 34789999 9985 44433 3489999999998654222222 22233334 4556666655 67899 99988776
Q ss_pred EEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEec-----
Q 019103 182 KLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVW----- 253 (346)
Q Consensus 182 ~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~----- 253 (346)
...-.... ......++|||++|+.+...+.|+++|++++++.....-.. .++ ..+.+. || +|.....
T Consensus 371 ~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~--~~v---~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 371 AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE--AMI---TDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS--SCC---CCEEECTTSCEEEEEEEECSST
T ss_pred ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC--CCc---cceEECCCCCeEEEEecCcccc
Confidence 54322221 23456689999999887777899999999998765543322 121 234444 55 4433332
Q ss_pred ----CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 254 ----QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 254 ----~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
..+.|.++|.++|++ ..+. . .......++|+|++++||.+..
T Consensus 446 ~~~~~~~~i~l~d~~~g~~-~~l~--~-----------~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRKI-FAAT--T-----------ENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp TCSCCEEEEEEEETTTTEE-EECS--C-----------SSSBEEEEEECTTSCEEEEEES
T ss_pred ccCCCCCeEEEEECCCCcE-EEee--C-----------CCcccCCceEcCCCCEEEEEec
Confidence 235899999999983 2221 1 1224567999999999987764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-05 Score=81.16 Aligned_cols=196 Identities=14% Similarity=0.055 Sum_probs=111.9
Q ss_pred eeEEEecCCE-EEEEcCCCCCC--eEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee---------------C
Q 019103 108 QGLLYAENDT-LFESTGLYGRS--SVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL---------------Q 169 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s--~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~---------------~ 169 (346)
.++.++|||+ |..+....|.. .|+++|+++|+.+....-+....+...+++|+.||..... .
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH 207 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence 5789999994 43332222443 9999999999976643211112223345567888877644 3
Q ss_pred CEEEEEECCCCcEEEEE--ecC-CC---ceeEEeeCCCEEEE-EC-C---CCeEEEEeCCC------Cc-EEEEEEeccC
Q 019103 170 KTGFIYDQNNLNKLEEF--THQ-MK---DGWGLATDGKVLFG-SD-G---SSMLYQIDPQT------LK-VIRKDIVRYK 231 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti--~~~-~p---eGwGLt~Dg~~Lyv-Sd-G---s~~l~vIDp~T------~k-vi~~I~V~~~ 231 (346)
..++++|..+.+..... ..+ .+ .+..+++||++|++ ++ + .+.|+++|..+ .+ ...++....+
T Consensus 208 ~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~ 287 (710)
T 2xdw_A 208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE 287 (710)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS
T ss_pred CEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC
Confidence 45999999887632222 111 11 25668999998876 33 3 57999999876 43 2444544332
Q ss_pred CeeeeeceeeEeeCCEEEEEecC---CCeEEEEeCCCCeE--EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019103 232 GREVRNLNELEFIKGEVWANVWQ---TDCIARISHEDGVV--LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 232 G~pv~~lNELE~~~G~LyaNv~~---sn~I~vID~~TG~V--v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
+.. .-+...++++|+.... ...|.++|.++++. ...+ .+ . .....+.++++.++ +.+++
T Consensus 288 ~~~----~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-----~~---~---~~~~~~~~~~~~~~-~~lv~ 351 (710)
T 2xdw_A 288 GEY----DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL-----VP---E---HEKDVLEWVACVRS-NFLVL 351 (710)
T ss_dssp SCE----EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-----EC---C---CSSCEEEEEEEETT-TEEEE
T ss_pred cEE----EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec-----cC---C---CCCCeEEEEEEEcC-CEEEE
Confidence 221 1134456677754322 23699999998742 1111 10 0 11237888999854 45555
Q ss_pred ecCCC--CcEEEEEE
Q 019103 307 TGKLW--PKLYEINL 319 (346)
Q Consensus 307 TGK~W--p~l~ev~l 319 (346)
+...- ..|+.+.+
T Consensus 352 ~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDL 366 (710)
T ss_dssp EEEETTEEEEEEEET
T ss_pred EEEECCEEEEEEEEC
Confidence 54322 24555543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.4e-06 Score=75.79 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=113.4
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
..+.++++|.||+++. + |..+|. +|+.+.....+.... ....+.++.||+.++ ++.++.+|++ ++.+.+++
T Consensus 63 ~~~~~~~~g~l~v~t~--~---l~~~d~-~g~~~~~~~~~~~~~-~~~~~~~~~l~v~t~-~~~l~~~d~~-g~~~~~~~ 133 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSD--K---VYAINP-DGTEKWRFDTKKAIV-SDFTIFEDILYVTSM-DGHLYAINTD-GTEKWRFK 133 (330)
T ss_dssp ECCEETTTTEECCSSC--E---EEEECC-CGGGGGGSCC------CCEEEETTEEEEECT-TSEEEEECTT-SCEEEEEE
T ss_pred cceEEecCCcEEEecC--c---EEEECC-CCcEEEEEECCCCcc-cCceEECCEEEEEec-CCEEEEEcCC-CCEEEEEc
Confidence 5677777889999875 3 999997 777654444443221 223445899999885 4789999998 88777776
Q ss_pred cCCCceeEEeeC-CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe-eCCEEEEEecCCCeEEEEeCCC
Q 019103 188 HQMKDGWGLATD-GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-IKGEVWANVWQTDCIARISHED 265 (346)
Q Consensus 188 ~~~peGwGLt~D-g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~-~~G~LyaNv~~sn~I~vID~~T 265 (346)
.+.+.-..+..| ++.+|+....+.|+.+|++ ++.+.+..... .. .+.+.. .+|.||+.. +.|.++| .+
T Consensus 134 ~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~---~~~~~~d~~g~l~v~t---~~l~~~d-~~ 203 (330)
T 3hxj_A 134 TKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTND--AI---TSAASIGKDGTIYFGS---DKVYAIN-PD 203 (330)
T ss_dssp CSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSS--CC---CSCCEECTTCCEEEES---SSEEEEC-TT
T ss_pred CCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCC--Cc---eeeeEEcCCCEEEEEe---CEEEEEC-CC
Confidence 542111122333 4558887767899999999 88777766532 11 223334 378999887 8899999 78
Q ss_pred CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 266 GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 266 G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
|+.+-...... ...++++.++++ ++|++.. ...|+.+
T Consensus 204 g~~~~~~~~~~-------------~~~~~~~~~~~g-~l~v~t~-~~gl~~~ 240 (330)
T 3hxj_A 204 GTEKWNFYAGY-------------WTVTRPAISEDG-TIYVTSL-DGHLYAI 240 (330)
T ss_dssp SCEEEEECCSS-------------CCCSCCEECTTS-CEEEEET-TTEEEEE
T ss_pred CcEEEEEccCC-------------cceeceEECCCC-eEEEEcC-CCeEEEE
Confidence 88876664311 234567777664 4555532 3455554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-05 Score=76.43 Aligned_cols=193 Identities=10% Similarity=0.055 Sum_probs=126.5
Q ss_pred eeEEEecCCE-EEEEcCCCCCCeEEEEECCCCc----EEEEe-cc-CCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECC
Q 019103 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGK----VEAIN-QM-EGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgk----v~~~~-~l-~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~ 178 (346)
.+|.+++++. ++.+++ .+..|.+||+.+++ ..... .+ ....-...++.. ++.++++.-.++.+.++|..
T Consensus 185 ~~l~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSAS--DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp CCEEECTTSTTEEEEEC--TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred EEEEeCCCCCCeEEEEe--CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 6999998886 777766 45699999999843 21111 11 111123445554 56677777889999999998
Q ss_pred CC---cEEEEEec-C-CCceeEEeeCCCEEEEE-CCCCeEEEEeCCCC-cEEEEEEeccCCeeeeeceeeEee-CC-EEE
Q 019103 179 NL---NKLEEFTH-Q-MKDGWGLATDGKVLFGS-DGSSMLYQIDPQTL-KVIRKDIVRYKGREVRNLNELEFI-KG-EVW 249 (346)
Q Consensus 179 tl---~~i~ti~~-~-~peGwGLt~Dg~~LyvS-dGs~~l~vIDp~T~-kvi~~I~V~~~G~pv~~lNELE~~-~G-~Ly 249 (346)
+. +.+.++.. . ......++++++.++++ ..++.|.++|..+. +.+.++.... .++ ..+.+. +| .++
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~--~~v---~~i~~sp~~~~~l 337 (430)
T 2xyi_A 263 NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK--DEI---FQVQWSPHNETIL 337 (430)
T ss_dssp CSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS--SCE---EEEEECSSCTTEE
T ss_pred CCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC--CCE---EEEEECCCCCCEE
Confidence 87 56666643 2 23445577888876654 46889999999884 4455554322 222 345555 34 578
Q ss_pred EEecCCCeEEEEeCCCC--------------eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 250 ANVWQTDCIARISHEDG--------------VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 250 aNv~~sn~I~vID~~TG--------------~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
+..-..+.|.+.|..+. +++.... .....++.++|+|+++.+++++...+.|.
T Consensus 338 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-------------~h~~~v~~~~~~p~~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 338 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-------------GHTAKISDFSWNPNEPWIICSVSEDNIMQ 404 (430)
T ss_dssp EEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECC-------------CCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred EEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcC-------------CCCCCceEEEECCCCCCEEEEEECCCCEE
Confidence 77777889999998872 2222221 11345789999999997788887888766
Q ss_pred EEEEe
Q 019103 316 EINLR 320 (346)
Q Consensus 316 ev~l~ 320 (346)
--++.
T Consensus 405 iw~~~ 409 (430)
T 2xyi_A 405 VWQMA 409 (430)
T ss_dssp EEEEC
T ss_pred EeEcc
Confidence 66653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.38 E-value=4.8e-06 Score=84.43 Aligned_cols=188 Identities=9% Similarity=-0.002 Sum_probs=113.9
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC----CeeEEEEEEeCCEEEEEEee--------CCEEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG----SYFGEGLTLLGEKLFQVTWL--------QKTGFIY 175 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~----~~FgeGit~~g~~LY~ltw~--------~~~v~V~ 175 (346)
..+.+++||+++.+ + .+..|.+||+++|+......-.. ......++++|++|...... .+.++++
T Consensus 20 ~~~~~spdg~~~~~-~--~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-E--QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCBSSSSCBCCC-C--SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccEEcCCCcEEEE-e--CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 47888999984433 4 34599999999998766654332 13444566678877766543 2789999
Q ss_pred ECCCCcEEEEEecC-C----CceeEEeeCCCEE-EEECCCCeEEEEeCCCCcEEEEEEeccCCe-----e--------ee
Q 019103 176 DQNNLNKLEEFTHQ-M----KDGWGLATDGKVL-FGSDGSSMLYQIDPQTLKVIRKDIVRYKGR-----E--------VR 236 (346)
Q Consensus 176 D~~tl~~i~ti~~~-~----peGwGLt~Dg~~L-yvSdGs~~l~vIDp~T~kvi~~I~V~~~G~-----p--------v~ 236 (346)
|.++.+. .++... . .....++|||++| |+++ ++|+++|.++.+.......+..+. + +.
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 9998876 444432 1 2335689999866 5566 689999999988764433322111 0 00
Q ss_pred eceeeEee-CC-EEEEEecCC---------------------------------CeEEEEeCCCCeEEEEEECCchhhhh
Q 019103 237 NLNELEFI-KG-EVWANVWQT---------------------------------DCIARISHEDGVVLGWVLLPNLRERL 281 (346)
Q Consensus 237 ~lNELE~~-~G-~LyaNv~~s---------------------------------n~I~vID~~TG~Vv~~I~l~~l~~~~ 281 (346)
....+.+- || +|+...... ..|.++|.+++++...+....-.
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~--- 250 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP--- 250 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG---
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC---
Confidence 11234443 45 444332211 26888888888864444321100
Q ss_pred hhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 282 VAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 282 ~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
. ........++|+||++.++++.
T Consensus 251 ~----~~~~~~~~~~~SpDg~~l~~~~ 273 (723)
T 1xfd_A 251 R----MREYYITMVKWATSTKVAVTWL 273 (723)
T ss_dssp G----GSSEEEEEEEESSSSEEEEEEE
T ss_pred C----CccceeEEEEEeCCCeEEEEEE
Confidence 0 0123567799999999886653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00029 Score=63.24 Aligned_cols=196 Identities=7% Similarity=-0.006 Sum_probs=125.2
Q ss_pred eeEEEEEEe-cCCCCcceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEE---EEeccC---CCeeEEEEEEeCCEEE
Q 019103 92 TIQVVNEFP-HDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVE---AINQME---GSYFGEGLTLLGEKLF 163 (346)
Q Consensus 92 t~~Vv~t~p-hd~~~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~---~~~~l~---~~~FgeGit~~g~~LY 163 (346)
++++..++. | ......|+|+|+ +.++.|+| .+..|++||+.+++.. ....+. .......+..++..|
T Consensus 27 ~~~l~~tL~GH--~~~V~~v~~sp~~~~~l~S~s--~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l- 101 (340)
T 4aow_A 27 QMTLRGTLKGH--NGWVTQIATTPQFPDMILSAS--RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFA- 101 (340)
T ss_dssp EEEEEEEECCC--SSCEEEEEECTTCTTEEEEEE--TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEE-
T ss_pred ceEEEEEECCc--cCCEEEEEEeCCCCCEEEEEc--CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEE-
Confidence 566777775 5 344579999987 47888888 4569999999876521 111221 222232222234444
Q ss_pred EEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019103 164 QVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 164 ~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
++.-.++.+.++|............. .......+++++.|+....+..+.++|........ +....+... .+.+
T Consensus 102 ~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~-~~~~~~~~~---v~~~ 177 (340)
T 4aow_A 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT-VQDESHSEW---VSCV 177 (340)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-ECSSSCSSC---EEEE
T ss_pred EEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE-EEeccccCc---ccce
Confidence 44556789999999998888877653 22333456778888877778899999987655432 212111112 2233
Q ss_pred Eee---CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 242 EFI---KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 242 E~~---~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
.+. .+.+++..-....|.+.|..+++++..+.-. ....+.|+|+|+++.|++.+.
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h-------------~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH-------------TGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC-------------SSCEEEEEECTTSSEEEEEET
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC-------------CCcEEEEEECCCCCEEEEEeC
Confidence 333 2356677767888999999999998877321 124688999999887666544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=8.1e-05 Score=76.51 Aligned_cols=162 Identities=15% Similarity=0.097 Sum_probs=111.0
Q ss_pred eEEEecC-CEEEEEcCC-----------CC------C----CeEEEEECCCCcEEEEeccCCCe------eEEEEE----
Q 019103 109 GLLYAEN-DTLFESTGL-----------YG------R----SSVRRVALETGKVEAINQMEGSY------FGEGLT---- 156 (346)
Q Consensus 109 GL~~~~d-~~LyeStGl-----------yg------~----s~V~~iDl~Tgkv~~~~~l~~~~------FgeGit---- 156 (346)
..+++++ +.+|+++|. .| + +.|..+|++||+++=..++.+.. ..+.+.
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~ 329 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK 329 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence 4678754 589998862 12 1 68999999999998887653210 011121
Q ss_pred -EeCC--EEEEEEeeCCEEEEEECCCCcEEEEEecCC----------------------C--------------------
Q 019103 157 -LLGE--KLFQVTWLQKTGFIYDQNNLNKLEEFTHQM----------------------K-------------------- 191 (346)
Q Consensus 157 -~~g~--~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~----------------------p-------------------- 191 (346)
.+|+ .+++..-+++.++++|++|++++.+++... |
T Consensus 330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 409 (582)
T 1flg_A 330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFL 409 (582)
T ss_dssp CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTT
T ss_pred cCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCc
Confidence 2343 345555678999999999999998877531 0
Q ss_pred -----ceeEEeeCCCEEEEE-C--------------------------------CCCeEEEEeCCCCcEEEEEEeccCCe
Q 019103 192 -----DGWGLATDGKVLFGS-D--------------------------------GSSMLYQIDPQTLKVIRKDIVRYKGR 233 (346)
Q Consensus 192 -----eGwGLt~Dg~~LyvS-d--------------------------------Gs~~l~vIDp~T~kvi~~I~V~~~G~ 233 (346)
.+.+++|+.+.+|+. + ..+.|+-||+.|++++=+.+.+.
T Consensus 410 Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--- 486 (582)
T 1flg_A 410 GGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--- 486 (582)
T ss_dssp CSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS---
T ss_pred cccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC---
Confidence 022345566788873 1 24689999999999987777643
Q ss_pred eeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECC
Q 019103 234 EVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 234 pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
+.. -.-+...+|.||+.. .++.+..+|.+||+++-+..++
T Consensus 487 ~~~-~g~~~tagglvf~g~-~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 487 PLW-AGVLATAGNLVFTGT-GDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp CCC-SCCEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEECS
T ss_pred CCc-ccceEeCCCEEEEEC-CCCcEEEEECCCCCEEEEecCC
Confidence 211 012445688999865 4789999999999999999773
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00013 Score=71.59 Aligned_cols=186 Identities=13% Similarity=0.079 Sum_probs=118.7
Q ss_pred CCEEEEEcCCCCCCeEEEEEC-CCCcEEEEeccC-CCeeEEEEEE-e-CCEEEEEEeeCCEEEEEECCCCcEEEEEecC-
Q 019103 115 NDTLFESTGLYGRSSVRRVAL-ETGKVEAINQME-GSYFGEGLTL-L-GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ- 189 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl-~Tgkv~~~~~l~-~~~FgeGit~-~-g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~- 189 (346)
++++..+.+.--++.|+.|++ .+|+.+..+... +..-..-++. . ++.+++..-.++.|-+.|.+|++.++++..+
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 344444422213679999998 558887776542 2221233444 2 3567788888999999999999999999732
Q ss_pred ----CCceeEEeeCCCEEEE-----------EC-CCCeEEEEeCCCCcEEEEEEecc-CCeeeeeceeeEeeCCEEEEEe
Q 019103 190 ----MKDGWGLATDGKVLFG-----------SD-GSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKGEVWANV 252 (346)
Q Consensus 190 ----~peGwGLt~Dg~~Lyv-----------Sd-Gs~~l~vIDp~T~kvi~~I~V~~-~G~pv~~lNELE~~~G~LyaNv 252 (346)
.-...+++|||+.+.+ |- .+.+|.++|+.|.+.+....+.. +|+.-..+ +-.+ +|.+.|+-
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l-sg~~-sg~~lASg 301 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL-EGDV-KDHCAAAI 301 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE-EEEE-ETTEEEEE
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeE-cccc-CCCEEEEE
Confidence 1112368899987754 21 26789999999999887665431 23211111 1111 24456666
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
-.+++|-+-|.++|+++.++.- + ...+...+||+|+++.|+ +|-...+|+
T Consensus 302 S~DgTIkIWDl~tGk~l~tL~g---------H---~~~vvs~vafSPDG~~La-SGS~D~TIk 351 (356)
T 2w18_A 302 LTSGTIAIWDLLLGQCTALLPP---------V---SDQHWSFVKWSGTDSHLL-AGQKDGNIF 351 (356)
T ss_dssp ETTSCEEEEETTTCSEEEEECC---------C-----CCCCEEEECSSSSEEE-EECTTSCEE
T ss_pred cCCCcEEEEECCCCcEEEEecC---------C---CCCeEEEEEECCCCCEEE-EEECCCcEE
Confidence 6788999999999999999831 0 112344689999998766 555556554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00012 Score=75.93 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=111.4
Q ss_pred eEEEec-CCEEEEEcCCCC-------------CCeEEEEECCCCcEEEEeccCCC----------eeEEEEE-EeCC--E
Q 019103 109 GLLYAE-NDTLFESTGLYG-------------RSSVRRVALETGKVEAINQMEGS----------YFGEGLT-LLGE--K 161 (346)
Q Consensus 109 GL~~~~-d~~LyeStGlyg-------------~s~V~~iDl~Tgkv~~~~~l~~~----------~FgeGit-~~g~--~ 161 (346)
...+++ ++.+|+++|.-. .++|..+|++||+++=.....+. +--..+. .+|+ .
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 456764 468999987310 25899999999999877765432 1111111 1243 5
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecCC----------C-------------------------------ceeEEeeCC
Q 019103 162 LFQVTWLQKTGFIYDQNNLNKLEEFTHQM----------K-------------------------------DGWGLATDG 200 (346)
Q Consensus 162 LY~ltw~~~~v~V~D~~tl~~i~ti~~~~----------p-------------------------------eGwGLt~Dg 200 (346)
+++..-+++.++++|++|++++.+++... + .+.+++|+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 404 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR 404 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence 55556678999999999999998876420 0 234567777
Q ss_pred CEEEEEC---------------------------------------CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019103 201 KVLFGSD---------------------------------------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 201 ~~LyvSd---------------------------------------Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
+.+|+.. ....|+-||+.|++++=+.+.+. |.. -.-+
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~-~g~~ 480 (599)
T 1w6s_A 405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---AVW-GGTM 480 (599)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---CCC-SBCE
T ss_pred CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC---Ccc-Ccce
Confidence 8887731 23589999999999987777643 110 0114
Q ss_pred EeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECC
Q 019103 242 EFIKGEVWANVWQTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 242 E~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
...+|.||+.. .++.+..+|.+||+++-+..++
T Consensus 481 ~tagg~vf~gt-~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 481 ATAGDLVFYGT-LDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EETTTEEEEEC-TTSEEEEEETTTCCEEEEEECS
T ss_pred EecCCEEEEEC-CCCeEEEEECCCCCEEEEeeCC
Confidence 45688999864 4789999999999999999773
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.2e-05 Score=77.01 Aligned_cols=190 Identities=9% Similarity=-0.044 Sum_probs=108.8
Q ss_pred cceeEEEecCCEEEEEcCCCCC--CeEEEEEC--CCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCc
Q 019103 106 FTQGLLYAENDTLFESTGLYGR--SSVRRVAL--ETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~--s~V~~iDl--~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
....+.++||..+|.+....|. ..|..+|+ +.+.. .+......-...++++++.++.+....+...++|.++.+
T Consensus 66 ~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~ 143 (582)
T 3o4h_A 66 SVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG 143 (582)
T ss_dssp EECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE--ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred ccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc--cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence 3467788888345555321133 36666777 44433 333222332446788887766666566666699998887
Q ss_pred EEEEEecCCCceeEEeeCCCEEEE-EC-C--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecCC
Q 019103 182 KLEEFTHQMKDGWGLATDGKVLFG-SD-G--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQT 255 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt~Dg~~Lyv-Sd-G--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~s 255 (346)
...-...+. ....++|||++|+. ++ + ...|+++|+++.+.. ++. +..+. .+.+.+. || .|+.+ ...
T Consensus 144 ~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~-~~~~~----~~~~~~SpDG~~l~~~-~~~ 215 (582)
T 3o4h_A 144 LRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD-SGEGS----FSSASISPGMKVTAGL-ETA 215 (582)
T ss_dssp EEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC-CSSCE----EEEEEECTTSCEEEEE-ECS
T ss_pred EEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee-cCCCc----cccceECCCCCEEEEc-cCC
Confidence 655444432 55668899999874 43 2 267999999988865 332 22121 2345454 56 46633 334
Q ss_pred C--eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 256 D--CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 256 n--~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
+ .|.++|.++|+.. .+. +....... +....+...+|+||+ .+++++....
T Consensus 216 ~~~~i~~~d~~~~~~~-~~~--~~~~~~~~---~~~~~~~~~~~spdg-~~~~~~~~~g 267 (582)
T 3o4h_A 216 REARLVTVDPRDGSVE-DLE--LPSKDFSS---YRPTAITWLGYLPDG-RLAVVARREG 267 (582)
T ss_dssp SCEEEEEECTTTCCEE-ECC--CSCSHHHH---HCCSEEEEEEECTTS-CEEEEEEETT
T ss_pred CeeEEEEEcCCCCcEE-Ecc--CCCcChhh---hhhccccceeEcCCC-cEEEEEEcCC
Confidence 4 7999999999987 331 21111000 011123445599999 5555443333
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.4e-05 Score=79.09 Aligned_cols=161 Identities=16% Similarity=0.101 Sum_probs=109.9
Q ss_pred eEEEecC-CEEEEEcCCC------------CC----CeEEEEECCCCcEEEEeccCCC----------eeEEEEEEeCC-
Q 019103 109 GLLYAEN-DTLFESTGLY------------GR----SSVRRVALETGKVEAINQMEGS----------YFGEGLTLLGE- 160 (346)
Q Consensus 109 GL~~~~d-~~LyeStGly------------g~----s~V~~iDl~Tgkv~~~~~l~~~----------~FgeGit~~g~- 160 (346)
.+.++++ +.+|++++.- |+ +.|..+|++||+++=.....+. +--..+...|+
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~ 318 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP 318 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence 5778864 5899988620 11 2599999999999877754321 11112223332
Q ss_pred -EEEEEEeeCCEEEEEECCCCcEEEEEecCC------------------------C-----------------ceeEEee
Q 019103 161 -KLFQVTWLQKTGFIYDQNNLNKLEEFTHQM------------------------K-----------------DGWGLAT 198 (346)
Q Consensus 161 -~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~------------------------p-----------------eGwGLt~ 198 (346)
.+++..-+++.++++|++|++++.++++.. + .+.++++
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp 398 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP 398 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence 244444578999999999999997655420 0 1145777
Q ss_pred CCCEEEEE-C------------------------C--------------------CCeEEEEeCCCCcEEEEEEeccCCe
Q 019103 199 DGKVLFGS-D------------------------G--------------------SSMLYQIDPQTLKVIRKDIVRYKGR 233 (346)
Q Consensus 199 Dg~~LyvS-d------------------------G--------------------s~~l~vIDp~T~kvi~~I~V~~~G~ 233 (346)
+.+.+|+. + | ++.|+.||++|++++=+++.+..
T Consensus 399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-- 476 (689)
T 1yiq_A 399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-- 476 (689)
T ss_dssp TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS--
T ss_pred CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC--
Confidence 88999984 1 0 26799999999999988877542
Q ss_pred eeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019103 234 EVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 234 pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
... --+...+|.||+.. .++.|..+|.+||+++-++.+
T Consensus 477 -~~~-g~~~tagglvf~gt-~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 477 -FNG-GTLSTAGNLVFEGS-ADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp -CCC-CEEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEEC
T ss_pred -ccC-ccceECCCEEEEEC-CCCcEEEEECCCCccceeeeC
Confidence 100 12445678999875 578999999999999999977
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.7e-05 Score=77.75 Aligned_cols=207 Identities=10% Similarity=0.049 Sum_probs=130.6
Q ss_pred EEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc--CCCeeEEEEEEeCC---EEEEEEee
Q 019103 95 VVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM--EGSYFGEGLTLLGE---KLFQVTWL 168 (346)
Q Consensus 95 Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l--~~~~FgeGit~~g~---~LY~ltw~ 168 (346)
.+.++. |.. -...+.|++++..+.|++ .+..|++||............ +....-..+....+ .+.++.-.
T Consensus 464 ~~~~~~~h~~--~v~~~~~s~~~~~l~s~s--~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 464 STRRFVGHTK--DVLSVAFSLDNRQIVSAS--RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp EEEEEECCSS--CEEEEEECTTSSCEEEEE--TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred ceeEEeCCCC--CEEEEEEeCCCCEEEEEe--CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 344553 432 347899999998777877 566999999876644332221 11222334444332 34555566
Q ss_pred CCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-C
Q 019103 169 QKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K 245 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~ 245 (346)
++.+.++|..+.+.+.++... .-....+++||+.|.....++.|.++|..+.+.+.++... .+ ++.+.+. +
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~---v~~~~~sp~ 613 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV---IHALCFSPN 613 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC---EEEEEECSS
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc---EEEEEEcCC
Confidence 899999999999998888632 1234567889998888777889999999999876554332 12 3345555 4
Q ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhc---c----CCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 246 GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAA---G----YNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 246 G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~---~----~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
+++.+.. ..+.|.+.|.++++++..+... +....... + .......+.++|+|+++.|+..+ ....|
T Consensus 614 ~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs-~Dg~i 686 (694)
T 3dm0_A 614 RYWLCAA-TEHGIKIWDLESKSIVEDLKVD-LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY-TDGVI 686 (694)
T ss_dssp SSEEEEE-ETTEEEEEETTTTEEEEEECCC-CC----------------CCCCEEEEEECTTSSEEEEEE-TTSEE
T ss_pred CcEEEEE-cCCCEEEEECCCCCChhhhccc-cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEc-CCCeE
Confidence 5544443 3677999999999999988652 21110000 0 00111246899999998776554 44443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-05 Score=78.90 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=108.9
Q ss_pred eEEEecCC--EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC---CEEEEEECCCCcEE
Q 019103 109 GLLYAEND--TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ---KTGFIYDQNNLNKL 183 (346)
Q Consensus 109 GL~~~~d~--~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~---~~v~V~D~~tl~~i 183 (346)
...+++|+ .+|.+.. .+.+.+||+++|+.......+. +.-.++++|+.|+...... ..++++|.++.+..
T Consensus 114 ~~~~s~dg~~~~~~s~~---~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~ 188 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGAT---EDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 188 (582)
T ss_dssp EEEEEECSSCEEEEEEC---SSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred eeeeCCCCCeEEEEecC---CCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence 45666666 4565543 2355589999998765554443 4455788999988665541 56999999888765
Q ss_pred EEEecC--CCceeEEeeCCCEEEEECCCC--eEEEEeCCCCcEEEEEEeccCCeeeeeceeeE--------ee-CCEEEE
Q 019103 184 EEFTHQ--MKDGWGLATDGKVLFGSDGSS--MLYQIDPQTLKVIRKDIVRYKGREVRNLNELE--------FI-KGEVWA 250 (346)
Q Consensus 184 ~ti~~~--~peGwGLt~Dg~~LyvSdGs~--~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE--------~~-~G~Lya 250 (346)
++... ......++|||++|+.++.++ +|+++|+++.+.. .+......+. .+. +. ||++|+
T Consensus 189 -~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~spdg~~~~ 261 (582)
T 3o4h_A 189 -VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE---DLELPSKDFS---SYRPTAITWLGYLPDGRLAV 261 (582)
T ss_dssp -EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE---ECCCSCSHHH---HHCCSEEEEEEECTTSCEEE
T ss_pred -EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE---EccCCCcChh---hhhhccccceeEcCCCcEEE
Confidence 44321 123456889999999877555 9999999998876 2222111111 122 33 678887
Q ss_pred EecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019103 251 NVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 251 Nv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
.....+.+.+.+. |+++. . +. ....+++++ +++.+ +++.....
T Consensus 262 ~~~~~g~~~l~~~--g~~~~---~------------~~-~~v~~~~~s-dg~~l-~~~s~~~~ 304 (582)
T 3o4h_A 262 VARREGRSAVFID--GERVE---A------------PQ-GNHGRVVLW-RGKLV-TSHTSLST 304 (582)
T ss_dssp EEEETTEEEEEET--TEEEC---C------------CS-SEEEEEEEE-TTEEE-EEEEETTE
T ss_pred EEEcCCcEEEEEE--CCeec---c------------CC-CceEEEEec-CCEEE-EEEcCCCC
Confidence 7766778877777 77544 1 01 134678999 66554 44444433
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00031 Score=65.01 Aligned_cols=204 Identities=9% Similarity=0.002 Sum_probs=121.5
Q ss_pred eeEEEEEEecCCCCcceeEEE-----ec-CCEEEEEcCCCCCCeEEEEECCCCc-------EEEEeccCCCeeEEEEEEe
Q 019103 92 TIQVVNEFPHDPRAFTQGLLY-----AE-NDTLFESTGLYGRSSVRRVALETGK-------VEAINQMEGSYFGEGLTLL 158 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~-----~~-d~~LyeStGlyg~s~V~~iDl~Tgk-------v~~~~~l~~~~FgeGit~~ 158 (346)
.++...++.- .......+.+ .+ |+.++.+++ .+..|++||+.+++ ....+. +....-..++..
T Consensus 10 ~~~~~~~l~g-H~~~V~~~~~~~s~~~~~d~~~l~sgs--~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~ 85 (343)
T 2xzm_R 10 QVVKRGILEG-HSDWVTSIVAGFSQKENEDSPVLISGS--RDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALS 85 (343)
T ss_dssp EEEEEEEEEC-CSSCEEEEEECCCSSTTCCCCEEEEEE--TTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEEC
T ss_pred Eeeeeeeecc-chhhhhheeeEEEeecCCCCCEEEEEc--CCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEEC
Confidence 3455555652 2344578888 55 778888877 55699999998653 222221 111112334443
Q ss_pred C-CEEEEEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEec-cCCee
Q 019103 159 G-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR-YKGRE 234 (346)
Q Consensus 159 g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~-~~G~p 234 (346)
. +.+.++.-.++.+.++|.++.+.+.++... .-....++||++.|+.+..+++|.++|....... ..... .+..+
T Consensus 86 ~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~ 164 (343)
T 2xzm_R 86 QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-SSAEKENHSDW 164 (343)
T ss_dssp SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-ECCTTTSCSSC
T ss_pred CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-eeecccCCCce
Confidence 2 334445567899999999999999988642 1234557889999988777899999998743221 11110 11111
Q ss_pred eeeceeeEeeC-----------CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019103 235 VRNLNELEFIK-----------GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 235 v~~lNELE~~~-----------G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
++.+.+.. +..++..-.+..|.+.| .+++....+.-. ....+.++|+|+++.
T Consensus 165 ---v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h-------------~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 165 ---VSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAH-------------ESNVNHLSISPNGKY 227 (343)
T ss_dssp ---EEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECC-------------SSCEEEEEECTTSSE
T ss_pred ---eeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCc-------------cccceEEEECCCCCE
Confidence 22233321 24555555678888999 456655555221 124678999999887
Q ss_pred EEEecCCCCcEEEEE
Q 019103 304 IFVTGKLWPKLYEIN 318 (346)
Q Consensus 304 LfVTGK~Wp~l~ev~ 318 (346)
|...+ ...+|+--.
T Consensus 228 l~sgs-~dg~v~iwd 241 (343)
T 2xzm_R 228 IATGG-KDKKLLIWD 241 (343)
T ss_dssp EEEEE-TTCEEEEEE
T ss_pred EEEEc-CCCeEEEEE
Confidence 65544 445444333
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-05 Score=79.74 Aligned_cols=197 Identities=11% Similarity=0.044 Sum_probs=113.0
Q ss_pred eeEEEecCCE-EEEEcCC-------CCCCeEEEEECCC------CcEEEEe-ccCCCeeEEEEEEeCCEEEEEEeeC---
Q 019103 108 QGLLYAENDT-LFESTGL-------YGRSSVRRVALET------GKVEAIN-QMEGSYFGEGLTLLGEKLFQVTWLQ--- 169 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGl-------yg~s~V~~iDl~T------gkv~~~~-~l~~~~FgeGit~~g~~LY~ltw~~--- 169 (346)
.++.++|||+ |+.++.. .+...|.++|+++ ++..... .-......-.++++|++|+.+.|..
T Consensus 133 ~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~ 212 (662)
T 3azo_A 133 ADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRM 212 (662)
T ss_dssp EEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCC
T ss_pred cCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCC
Confidence 5789999984 5544321 2336899999999 7654322 1122222334566788898877654
Q ss_pred ----CEEEEEECC-CC--cEEEEEecC---CCceeEEeeCCCEEEEECCCC--eEEEEeCCCCcEEEEEEecc-CCeeee
Q 019103 170 ----KTGFIYDQN-NL--NKLEEFTHQ---MKDGWGLATDGKVLFGSDGSS--MLYQIDPQTLKVIRKDIVRY-KGREVR 236 (346)
Q Consensus 170 ----~~v~V~D~~-tl--~~i~ti~~~---~peGwGLt~Dg~~LyvSdGs~--~l~vIDp~T~kvi~~I~V~~-~G~pv~ 236 (346)
..++++|.+ ++ ....++..+ .......++||+.+|+++.++ +|+.+|+++.+....+.... .+.|..
T Consensus 213 ~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w 292 (662)
T 3azo_A 213 PWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLW 292 (662)
T ss_dssp TTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCC
T ss_pred CCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccc
Confidence 689999998 56 233344321 223345789999777787544 99999998877543222111 011111
Q ss_pred e--ceeeEee-CCEEEE-EecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 237 N--LNELEFI-KGEVWA-NVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 237 ~--lNELE~~-~G~Lya-Nv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
. ...+.+. +|++++ .......|.++|.+++++ ..+... .....+++ ++++++++++.....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~-------------~~~~~~~~-s~~~~~~~~~~~~~~ 357 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGEL-VDAAGP-------------WTEWAATL-TVSGTRAVGVAASPR 357 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEE-EECCSS-------------CCEEEEEE-EEETTEEEEEEEETT
T ss_pred cccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcE-EEecCC-------------CCeEEEEE-ecCCCEEEEEEcCCC
Confidence 1 1234444 566554 333456799999999984 444221 11334551 344566665544443
Q ss_pred ---cEEEEEE
Q 019103 313 ---KLYEINL 319 (346)
Q Consensus 313 ---~l~ev~l 319 (346)
.+|.+.+
T Consensus 358 ~~~~i~~~d~ 367 (662)
T 3azo_A 358 TAYEVVELDT 367 (662)
T ss_dssp EEEEEEEEET
T ss_pred CCCEEEEEEC
Confidence 6776653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=5.4e-05 Score=81.55 Aligned_cols=193 Identities=12% Similarity=-0.001 Sum_probs=112.4
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeC---------CEEEEE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQ---------KTGFIY 175 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~---------~~v~V~ 175 (346)
....+.++|||+.+.+.. .+..|.+||+++|++.....-. .......++++|+.|....... +.++++
T Consensus 380 ~~~~~~~SpDG~~la~~~--~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 380 NVFAMGVDRNGKFAVVAN--DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp SEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred ceeeeEECCCCCEEEEEC--CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 346899999996444444 3459999999999987766332 2233444566777776665433 689999
Q ss_pred ECCCCcEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE-------EEEEE-------------------
Q 019103 176 DQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV-------IRKDI------------------- 227 (346)
Q Consensus 176 D~~tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv-------i~~I~------------------- 227 (346)
|.++.+ +.++.. . ......+++||++||.+...+.....|..+..+ .-.+.
T Consensus 458 d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (1045)
T 1k32_A 458 DMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE 536 (1045)
T ss_dssp ETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCC
T ss_pred ECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccc
Confidence 999887 444432 2 123345789999987743222111222211111 00000
Q ss_pred ---eccCCe-----ee----eeceeeEee-CCEEEEE-------------ecCCCeEEEEeCCCCeEEEEEECCchhhhh
Q 019103 228 ---VRYKGR-----EV----RNLNELEFI-KGEVWAN-------------VWQTDCIARISHEDGVVLGWVLLPNLRERL 281 (346)
Q Consensus 228 ---V~~~G~-----pv----~~lNELE~~-~G~LyaN-------------v~~sn~I~vID~~TG~Vv~~I~l~~l~~~~ 281 (346)
+..+|. ++ ...+.+.+. ||++|+. .-....|.++|.++++.....
T Consensus 537 ~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--------- 607 (1045)
T 1k32_A 537 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK--------- 607 (1045)
T ss_dssp CCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---------
T ss_pred cccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee---------
Confidence 000110 00 112233333 5666653 112447999999999864322
Q ss_pred hhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 282 VAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 282 ~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
....+++++|||++|++++.. .++.+.+.
T Consensus 608 --------~~v~~~~~S~DG~~l~~~~~~--~i~~~d~~ 636 (1045)
T 1k32_A 608 --------NNLTDLRLSADRKTVMVRKDD--GKIYTFPL 636 (1045)
T ss_dssp --------EEEEEEEECTTSCEEEEEETT--SCEEEEES
T ss_pred --------cCcceEEECCCCCEEEEEcCC--cEEEEeCc
Confidence 134678999999999999765 67777764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.1e-06 Score=84.09 Aligned_cols=110 Identities=14% Similarity=0.060 Sum_probs=77.2
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC----CeeEEEEEEeCCEEEEEEee--------CCEEEEEE
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG----SYFGEGLTLLGEKLFQVTWL--------QKTGFIYD 176 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~----~~FgeGit~~g~~LY~ltw~--------~~~v~V~D 176 (346)
++.+++||+++.++. +..|.+||+++|+......-.. ....-.++++|++|..+... ++.++++|
T Consensus 20 ~~~~s~dg~~~~~~~---d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQSA---DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEECT---TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEEcC---CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 778899997555543 4599999999999765553221 13445567788888766542 47899999
Q ss_pred CCCCcEE--EEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEE
Q 019103 177 QNNLNKL--EEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (346)
Q Consensus 177 ~~tl~~i--~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi 223 (346)
.++.+.+ .++... .....++|||++|..+. +++|+++|..+.+..
T Consensus 97 ~~~g~~~~~~~l~~~-~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 97 LSNGEFVRGNELPRP-IQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF 143 (719)
T ss_dssp TTTTEECCSSCCCSS-BCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred CCCCccccceecCcc-cccceECCCCCEEEEEE-CCeEEEEeCCCCCcE
Confidence 9998774 233222 35567899998765532 469999999988764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-05 Score=72.59 Aligned_cols=170 Identities=9% Similarity=-0.007 Sum_probs=106.0
Q ss_pred EEEEEEecCCCCcceeEEEec--CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCC
Q 019103 94 QVVNEFPHDPRAFTQGLLYAE--NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQK 170 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~--d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~ 170 (346)
++++.+.+....-...+.+++ ++.++.+.+ .+..|++||+.+++............-..++... +.++++--.++
T Consensus 115 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 115 KVLREIEVDSANEIIYMYGHNEVNTEYFIWAD--NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp CEEEEEECCCSSCEEEEECCC---CCEEEEEE--TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe--CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence 345555544344457899999 888888877 4569999999999986655332221122344443 33444446789
Q ss_pred EEEEEECCCCcEE-EEEec--C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc-CCeeeeeceeeEee-
Q 019103 171 TGFIYDQNNLNKL-EEFTH--Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFI- 244 (346)
Q Consensus 171 ~v~V~D~~tl~~i-~ti~~--~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~-~G~pv~~lNELE~~- 244 (346)
.+.++|..+.+.+ .++.. . .-....+++||++|..+. ++.|.++|..+.+.+.++..-. +..++.. ..+.+.
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 270 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT-VTYDIDD 270 (343)
T ss_dssp CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CC-EEEEECT
T ss_pred EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccc-eEEEECC
Confidence 9999999999988 77765 2 123445788999998865 3499999999987765444311 1111111 125555
Q ss_pred CCEEEEE-ecCCCeEEEEeCCCCe
Q 019103 245 KGEVWAN-VWQTDCIARISHEDGV 267 (346)
Q Consensus 245 ~G~LyaN-v~~sn~I~vID~~TG~ 267 (346)
+|+..+. ...++.|.+.|.+++.
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTT
T ss_pred CCCEEEEecCCCCcEEEEEEcccc
Confidence 4544444 3337788888876543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.3e-05 Score=71.29 Aligned_cols=202 Identities=9% Similarity=0.029 Sum_probs=120.4
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc-----------EEEEeccC-------------CCeeEEEEEEeCC-
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGK-----------VEAINQME-------------GSYFGEGLTLLGE- 160 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk-----------v~~~~~l~-------------~~~FgeGit~~g~- 160 (346)
....+.|+++|.++.+.+ .+..|++||+.+++ +...+.-. ...........++
T Consensus 30 ~V~~v~~s~~g~~la~g~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGD--KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp SEEEEEECSSSSEEEEEE--TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cEEEEEECCCCCEEEEEc--CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 347899999998777777 45699999999887 34443321 2222222222331
Q ss_pred EEEEEEeeCCEEEEEECCCCcEEE---------------------------------------EEe--cC-CCceeEEee
Q 019103 161 KLFQVTWLQKTGFIYDQNNLNKLE---------------------------------------EFT--HQ-MKDGWGLAT 198 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~~i~---------------------------------------ti~--~~-~peGwGLt~ 198 (346)
..+++.-.++.+.++|..+.+... .+. +. .-....+++
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 344455668999999987644321 221 11 123456788
Q ss_pred CCCEEEEECCCCeEEEEeCCC-CcEEEEEEec-----cCCeeeeeceeeEee-CC-EEEEEecCCCeEEEEeCCCCeE--
Q 019103 199 DGKVLFGSDGSSMLYQIDPQT-LKVIRKDIVR-----YKGREVRNLNELEFI-KG-EVWANVWQTDCIARISHEDGVV-- 268 (346)
Q Consensus 199 Dg~~LyvSdGs~~l~vIDp~T-~kvi~~I~V~-----~~G~pv~~lNELE~~-~G-~LyaNv~~sn~I~vID~~TG~V-- 268 (346)
|++.|..+ .++.|.++|.++ .+....+.+. .+.. .++.+.+. +| .+++..-.++.|.+.|..+++.
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTE---VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCC---CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCc---ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999888 688999999984 4444444221 1112 23456665 44 5666666688999999999986
Q ss_pred --EEEEECCchhh---hhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 269 --LGWVLLPNLRE---RLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 269 --v~~I~l~~l~~---~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+..+....-.. .... .....+.++|+|+++.|...+. ..|.--++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~ 313 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSE----IISSISDVKFSHSGRYMMTRDY--LSVKVWDL 313 (447)
T ss_dssp TTCEEECCC-----CCHHHH----HTTCEEEEEECTTSSEEEEEES--SEEEEEET
T ss_pred ceeeEeccCCCccccccccc----cCceEEEEEECCCCCEEEEeeC--CeEEEEeC
Confidence 45553311000 0000 0015688999999988776665 66655544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=74.10 Aligned_cols=191 Identities=12% Similarity=0.068 Sum_probs=111.4
Q ss_pred eeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-eeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 108 QGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
..+.++|||+ |+.+....|...|.++|+++|+......-... .++.-.+++|+.|+.+... +.++++|.++.+....
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE-LNLMKVDLETLEEQVI 117 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT-TEEEEEETTTCCEEEE
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC-CcEEEEECCCCCcEEE
Confidence 5778999994 44343333667899999999986543322222 1222346678888666543 4899999998876555
Q ss_pred EecCCCceeE-----------------------EeeCCCEEEEE-----CCCCeEEEEeCCCCcEEEEEEeccCCeeeee
Q 019103 186 FTHQMKDGWG-----------------------LATDGKVLFGS-----DGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (346)
Q Consensus 186 i~~~~peGwG-----------------------Lt~Dg~~LyvS-----dGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~ 237 (346)
...+ .+|. ++||++.+++. ++...|+++|+++.+......- . . .
T Consensus 118 ~~~~--~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~-~--~---~ 189 (396)
T 3c5m_A 118 YTVD--EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD-T--A---W 189 (396)
T ss_dssp EECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE-S--S---C
T ss_pred Eecc--cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC-C--c---c
Confidence 4432 3332 24556655443 4567999999999876543321 1 1 1
Q ss_pred ceeeEee--CC-EE-EEEecCC----CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec-
Q 019103 238 LNELEFI--KG-EV-WANVWQT----DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG- 308 (346)
Q Consensus 238 lNELE~~--~G-~L-yaNv~~s----n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG- 308 (346)
...+.+. +| +| |+..-.. ..|.++|.+++++.... . . ......+.++|+|++++|+.+.
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~-~--------~~~~~~~~~~~spdg~~l~~~~~ 257 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK---E-H--------AEGESCTHEFWIPDGSAMAYVSY 257 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS---C-C--------CTTEEEEEEEECTTSSCEEEEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee---c-c--------CCCccccceEECCCCCEEEEEec
Confidence 2234443 34 34 4443222 47999999887642211 1 0 0123467799999999766552
Q ss_pred C-CCCc--EEEEEE
Q 019103 309 K-LWPK--LYEINL 319 (346)
Q Consensus 309 K-~Wp~--l~ev~l 319 (346)
. ..+. ||.+.+
T Consensus 258 ~~~~~~~~l~~~d~ 271 (396)
T 3c5m_A 258 FKGQTDRVIYKANP 271 (396)
T ss_dssp ETTTCCEEEEEECT
T ss_pred CCCCccceEEEEEC
Confidence 2 2334 776654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-06 Score=88.96 Aligned_cols=205 Identities=10% Similarity=0.041 Sum_probs=115.1
Q ss_pred eeEEEecCCE-EEEEcCC------CCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 108 QGLLYAENDT-LFESTGL------YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGl------yg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
..+.++|||+ |..++.. .++..|.++|+++|+.+....+.........+++|++|..+ .++.++++|..+.
T Consensus 63 ~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~--~~~~i~~~~~~~g 140 (719)
T 1z68_A 63 SNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYV--YQNNIYLKQRPGD 140 (719)
T ss_dssp SEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEE--ETTEEEEESSTTS
T ss_pred eeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEE--ECCeEEEEeCCCC
Confidence 5889999995 4333221 01469999999999874333444444445567788776655 3789999999888
Q ss_pred cEEEEEecCCC--------------------ceeEEeeCCCEEEE-E-CCC-----------------------------
Q 019103 181 NKLEEFTHQMK--------------------DGWGLATDGKVLFG-S-DGS----------------------------- 209 (346)
Q Consensus 181 ~~i~ti~~~~p--------------------eGwGLt~Dg~~Lyv-S-dGs----------------------------- 209 (346)
+...-...+.. .+...+|||++|+. + |.+
T Consensus 141 ~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~ 220 (719)
T 1z68_A 141 PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAK 220 (719)
T ss_dssp CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSC
T ss_pred CcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCC
Confidence 76432211111 25778999998865 4 322
Q ss_pred ---CeEEEEeCCCCcEEEEEEeccC----CeeeeeceeeEee-CCEEEEEec--CC--CeEEEEe----CCCCeEEEEEE
Q 019103 210 ---SMLYQIDPQTLKVIRKDIVRYK----GREVRNLNELEFI-KGEVWANVW--QT--DCIARIS----HEDGVVLGWVL 273 (346)
Q Consensus 210 ---~~l~vIDp~T~kvi~~I~V~~~----G~pv~~lNELE~~-~G~LyaNv~--~s--n~I~vID----~~TG~Vv~~I~ 273 (346)
.+|+++|.++.+.+..+.+... +.. ..+..+.+. ||++++... .. ..|.++| +++|++...+.
T Consensus 221 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~ 299 (719)
T 1z68_A 221 NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD-YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQE 299 (719)
T ss_dssp CCEEEEEEEESSCHHHHCCEECCCCHHHHTSC-EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGE
T ss_pred CCeeEEEEEECCCCCccceeEccCCccCCCCc-ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEe
Confidence 1788999988775322333210 111 112234443 577665422 12 2488899 88887532221
Q ss_pred CCchhhhhhhccCCCCceeeEEEEeCCCCEEEE-ec--CCCCcEEEEEE
Q 019103 274 LPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV-TG--KLWPKLYEINL 319 (346)
Q Consensus 274 l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV-TG--K~Wp~l~ev~l 319 (346)
. .... ..+.-.......++|+|+++.+++ +. ..+..||.+.+
T Consensus 300 ~--~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~ 344 (719)
T 1z68_A 300 H--IEES--RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD 344 (719)
T ss_dssp E--EEEC--SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred c--cccc--CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEEC
Confidence 0 0000 000000001126789999998766 33 23456666544
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00015 Score=71.69 Aligned_cols=193 Identities=11% Similarity=0.092 Sum_probs=127.7
Q ss_pred ceeEEEecCCEEEEE-cCC------------CCCCeEEEEECCCC--cEEEEeccCC-----CeeEEEEEEe--------
Q 019103 107 TQGLLYAENDTLFES-TGL------------YGRSSVRRVALETG--KVEAINQMEG-----SYFGEGLTLL-------- 158 (346)
Q Consensus 107 TqGL~~~~d~~LyeS-tGl------------yg~s~V~~iDl~Tg--kv~~~~~l~~-----~~FgeGit~~-------- 158 (346)
.+++.+++.++||+= +|. .+.-+|..||+.|+ ++++++.+++ .-|-..+.++
T Consensus 89 V~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c 168 (381)
T 3q6k_A 89 IYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDC 168 (381)
T ss_dssp EEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTS
T ss_pred eeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCC
Confidence 368888888898864 452 34568999999999 9999998873 2344567777
Q ss_pred -CCEEEEEEeeCCEEEEEECCCCcEEEEEe------------c-------C-CCceeEEeeC----CCEEEEEC-CCCeE
Q 019103 159 -GEKLFQVTWLQKTGFIYDQNNLNKLEEFT------------H-------Q-MKDGWGLATD----GKVLFGSD-GSSML 212 (346)
Q Consensus 159 -g~~LY~ltw~~~~v~V~D~~tl~~i~ti~------------~-------~-~peGwGLt~D----g~~LyvSd-Gs~~l 212 (346)
+..+|+++-...-+.|||.++.+--+-.. + . .-.|.+|++| +++||-+- .+..+
T Consensus 169 ~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~l 248 (381)
T 3q6k_A 169 SETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKV 248 (381)
T ss_dssp CSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEE
T ss_pred CccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcE
Confidence 46799999888999999988765433221 0 0 1356778888 88999976 57789
Q ss_pred EEEeCCCC---cEEEEE-EeccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCC----eEEEEEECCchhhhhh
Q 019103 213 YQIDPQTL---KVIRKD-IVRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDG----VVLGWVLLPNLRERLV 282 (346)
Q Consensus 213 ~vIDp~T~---kvi~~I-~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG----~Vv~~I~l~~l~~~~~ 282 (346)
+-|.++-+ ...+.+ .+|+.| |...--++.++ +|.||.+.-..+.|...|+++. +-...+.-.
T Consensus 249 y~V~T~~L~~~~~~~~v~~~G~kg-~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d------- 320 (381)
T 3q6k_A 249 YSVNTKELKQKGGKLNPELLGNRG-KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS------- 320 (381)
T ss_dssp EEEEHHHHSSTTCCCCCEEEEECC-TTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC-------
T ss_pred EEEEHHHhhCcchhhceEEeeecC-CCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC-------
Confidence 99864221 111222 233322 11111135554 5899999999999999999871 112333111
Q ss_pred hccCCCCceeeEEEEeCCCCEEEEecCCC
Q 019103 283 AAGYNGIDVLNGIAWDSNRNRIFVTGKLW 311 (346)
Q Consensus 283 ~~~~~~~~vlNGIA~d~~~~~LfVTGK~W 311 (346)
+....|.++++++++...+++++.-
T Consensus 321 ----~~l~~pd~~~i~~~g~Lwv~sn~l~ 345 (381)
T 3q6k_A 321 ----SRFVFGTDISVDSKGGLWFMSNGFP 345 (381)
T ss_dssp ----TTCCSEEEEEECTTSCEEEEECSCC
T ss_pred ----CCccccCeEEECCCCeEEEEECcch
Confidence 2334789999998886555666653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00028 Score=67.23 Aligned_cols=195 Identities=10% Similarity=0.049 Sum_probs=127.3
Q ss_pred EEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEE
Q 019103 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v 172 (346)
++++.+. +........+.|++||.++.+.+ .+..|++||+.+++.+....-.... ...++.++. +.++...++.+
T Consensus 136 ~~~~~~~~~~~~~~V~sv~fspdg~~lasgs--~Dg~v~iWd~~~~~~~~~~~~h~~~-v~~~s~~~~-~l~sgs~d~~i 211 (420)
T 4gga_A 136 DILQLLQMEQPGEYISSVAWIKEGNYLAVGT--SSAEVQLWDVQQQKRLRNMTSHSAR-VGSLSWNSY-ILSSGSRSGHI 211 (420)
T ss_dssp CEEEEEECCSTTCCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSSC-EEEEEEETT-EEEEEETTSEE
T ss_pred CEEEEEEecCCCCcEEEEEECCCCCEEEEEE--CCCeEEEEEcCCCcEEEEEeCCCCc-eEEEeeCCC-EEEEEeCCCce
Confidence 4555554 23445568999999998777766 4569999999999998887654332 234566655 44555677899
Q ss_pred EEEECCCC-cEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEE-EE-eccCCeeeeeceeeEee--C
Q 019103 173 FIYDQNNL-NKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRK-DI-VRYKGREVRNLNELEFI--K 245 (346)
Q Consensus 173 ~V~D~~tl-~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~-I~-V~~~G~pv~~lNELE~~--~ 245 (346)
.++|..+. ..+.++... ...+....++|+.+.....++.+.++|..+.+.... +. ......++ ..+.+. +
T Consensus 212 ~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V---~~~~~~p~~ 288 (420)
T 4gga_A 212 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV---KAVAWCPWQ 288 (420)
T ss_dssp EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCE---EEEEECTTC
T ss_pred eEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCce---eeeeeCCCc
Confidence 99997754 445555532 123444677899888877788999999887653211 11 11111122 223333 3
Q ss_pred CEEEEEe--cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 246 GEVWANV--WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 246 G~LyaNv--~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
+.+++.. -.+.+|.+-|..+|+.+..+... .....+++.++++.+++++.
T Consensus 289 ~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~--------------~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 289 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--------------SQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp TTEEEEEECTTTCEEEEEETTTTEEEEEEECS--------------SCEEEEEEETTTTEEEEEEC
T ss_pred ccEEEEEeecCCCEEEEEeCCccccceeeccc--------------cceeeeeecCCCCeEEEEEe
Confidence 4455433 34568999999999999988652 13467889999999988754
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00019 Score=68.37 Aligned_cols=197 Identities=14% Similarity=0.100 Sum_probs=126.0
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-eeEEEEEE--eCCEEEEEEee
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTL--LGEKLFQVTWL 168 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-~FgeGit~--~g~~LY~ltw~ 168 (346)
.++|++.-..-...|..=|.+++++.|-++ + +++|++||+.||+++....+... ..-..++. +|+.|.. --.
T Consensus 93 p~~~l~ap~~~~d~y~~~l~wS~~n~lAvg--l--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~las-gs~ 167 (420)
T 4gga_A 93 PDRILDAPEIRNDYYLNLVDWSSGNVLAVA--L--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV-GTS 167 (420)
T ss_dssp CSEEEECTTCCCCTTCBCEEECTTSEEEEE--E--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEE-EET
T ss_pred CceEEECCCCcccccceeEEECCCCEEEEE--e--CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEE-EEC
Confidence 466665422222334566888877765554 3 35999999999999988876432 12233444 4555444 456
Q ss_pred CCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE-EEEEEeccCCeeeeeceeeEee-CC
Q 019103 169 QKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV-IRKDIVRYKGREVRNLNELEFI-KG 246 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv-i~~I~V~~~G~pv~~lNELE~~-~G 246 (346)
++.+.++|.++.+.+.++......-..+++|++.|.....+..+.++|..+... +.++.-.. ..+ ..+.+. +|
T Consensus 168 Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~--~~~---~~~~~~~~g 242 (420)
T 4gga_A 168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS--QEV---CGLRWAPDG 242 (420)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS--SCE---EEEEECTTS
T ss_pred CCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccc--cce---eeeeecCCC
Confidence 799999999999999998753345566899999888877889999999876443 33333322 121 123333 56
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
...+....++.|.+.|..+++..... +... .........++|.|.+..++.+
T Consensus 243 ~~l~s~~~D~~v~i~~~~~~~~~~~~----~~~~-----~~~~~~V~~~~~~p~~~~~la~ 294 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSAPGEGGWVP----LQTF-----TQHQGAVKAVAWCPWQSNVLAT 294 (420)
T ss_dssp SEEEEEETTSCEEEEESSCCSSCSCC----SEEE-----CCCSSCEEEEEECTTCTTEEEE
T ss_pred CeeeeeeccccceEEeecccccccee----eeee-----cccCCceeeeeeCCCcccEEEE
Confidence 66666667889999999888632110 0000 0112345779999988777655
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00011 Score=74.92 Aligned_cols=184 Identities=9% Similarity=0.028 Sum_probs=122.8
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcE
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
......+.++++++++.|++ .+..|++||+.+++......- ........+.++++.|. +.-.++.+.++|......
T Consensus 430 ~~~v~~v~~s~~g~~l~sgs--~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 430 SHFVEDVVLSSDGQFALSGS--WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDRTIKLWNTLGECK 506 (694)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEE-EEETTSCEEEECTTSCEE
T ss_pred CCcEEEEEECCCCCEEEEEe--CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEE-EEeCCCEEEEEECCCCcc
Confidence 44457899999998888877 556999999999988777643 23333333333445444 445678999999765433
Q ss_pred EEEEecC--C---CceeEEeeCC--CEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecC
Q 019103 183 LEEFTHQ--M---KDGWGLATDG--KVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (346)
Q Consensus 183 i~ti~~~--~---peGwGLt~Dg--~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~ 254 (346)
....... . -....+++++ ..|+....+++|.++|..+.+...++.-.. .+ ++.+.+. +|.+.+..-.
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~---v~~v~~spdg~~l~sg~~ 581 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GY---VSTVAVSPDGSLCASGGK 581 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SC---EEEEEECTTSSEEEEEET
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CC---EEEEEEeCCCCEEEEEeC
Confidence 3222111 1 1233466776 345555568899999999998876654322 22 3345555 6777777777
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
++.|.+-|..+++.+..+.. ....+.++|+|++..|..+..
T Consensus 582 Dg~i~iwd~~~~~~~~~~~~--------------~~~v~~~~~sp~~~~l~~~~~ 622 (694)
T 3dm0_A 582 DGVVLLWDLAEGKKLYSLEA--------------NSVIHALCFSPNRYWLCAATE 622 (694)
T ss_dssp TSBCEEEETTTTEEEECCBC--------------SSCEEEEEECSSSSEEEEEET
T ss_pred CCeEEEEECCCCceEEEecC--------------CCcEEEEEEcCCCcEEEEEcC
Confidence 89999999999998765522 125688999999887666543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.5e-07 Score=90.48 Aligned_cols=147 Identities=14% Similarity=0.051 Sum_probs=79.6
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCcee
Q 019103 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGW 194 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGw 194 (346)
++++|+++. +..|..+|++||+++-+... ..... .-...++++|+..-.++.++.+|++|++.+.+.+...+...
T Consensus 9 ~~~v~~gs~---dg~v~a~d~~tG~~~W~~~~-~~~~s-~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 9 ETLLFVSTL---DGSLHAVSKRTGSIKWTLKE-DPVLQ-VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp TTEEEEEET---TSEEEEEETTTCCEEEEEEC-CCSCC-CC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred CCEEEEEcC---CCEEEEEECCCCCEEEEecC-CCcee-cceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 578998865 35999999999999888776 22221 12234566777766788999999999998877664311111
Q ss_pred --EEe-eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEE
Q 019103 195 --GLA-TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGW 271 (346)
Q Consensus 195 --GLt-~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~ 271 (346)
... .+++.+|+...++.|+.+|++|++++-+..... .. .....++.||+..+ ...|..+|++||+++-.
T Consensus 84 ~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~----~~~p~~~~v~~~~~-dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 84 QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF---AD----SLSPSTSLLYLGRT-EYTITMYDTKTRELRWN 155 (369)
T ss_dssp TTCSCC-----CCCCEEEEEEEEECCC-----------------------------EEEEEE-EEEEECCCSSSSSCCCE
T ss_pred ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC---cc----cccccCCEEEEEec-CCEEEEEECCCCCEEEe
Confidence 111 156678876556789999999999987666532 11 12235678998754 57899999999998766
Q ss_pred EEC
Q 019103 272 VLL 274 (346)
Q Consensus 272 I~l 274 (346)
+..
T Consensus 156 ~~~ 158 (369)
T 2hz6_A 156 ATY 158 (369)
T ss_dssp EEE
T ss_pred Eec
Confidence 543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00011 Score=69.02 Aligned_cols=186 Identities=9% Similarity=-0.021 Sum_probs=112.7
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
...+.|++||+++.+.+ ++.+++||.++++.......+. .-...+...++.+.++.-.++.+.++|..+.+.+.++
T Consensus 22 V~~v~fs~dg~~la~g~---~~~~~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~ 97 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILST---LKSFEIYNVHPVAHIMSQEMRH-LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI 97 (355)
T ss_dssp CCEEEECTTSSEEEEEC---SSEEEEEEETTEEEEEEEECSC-CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEc---CCEEEEEecCCcceeeeeecCC-eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE
Confidence 36899999998766543 3478999999988776665543 1122223345666666666789999999999999999
Q ss_pred ecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCC-cEEEEEEeccCCeeeeeceeeEeeCCEEEEE-ecCCCeEEEEeCC
Q 019103 187 THQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTL-KVIRKDIVRYKGREVRNLNELEFIKGEVWAN-VWQTDCIARISHE 264 (346)
Q Consensus 187 ~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~-kvi~~I~V~~~G~pv~~lNELE~~~G~LyaN-v~~sn~I~vID~~ 264 (346)
.+. ..-.++..+.+.++++- ++.|+++|..+. +.+.++.. +.. + ..+..+.+.+. --.++.|.+.|..
T Consensus 98 ~~~-~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~-----~~~-~--~~~s~~~la~~sg~~~g~v~iwd~~ 167 (355)
T 3vu4_A 98 KVD-APVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR-----FGG-V--CEFSNGLLVYSNEFNLGQIHITKLQ 167 (355)
T ss_dssp ECS-SCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE-----EEE-E--EEEETTEEEEEESSCTTCEEEEECC
T ss_pred ECC-CceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc-----CCc-e--EEEEccEEEEeCCCcCcEEEEEECC
Confidence 875 34456666777776653 468999999887 65544443 111 1 11222444333 3456789999998
Q ss_pred CCeEEEEEEC----Cchhh---hhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 265 DGVVLGWVLL----PNLRE---RLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 265 TG~Vv~~I~l----~~l~~---~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+++....-.- ..+.+ .+. .-....+.++|+|+++.|...+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~p~~~~~~----~h~~~v~~~~~s~~g~~l~s~s~d 216 (355)
T 3vu4_A 168 SSGSATTQDQGVQQKAILGKGVLIK----AHTNPIKMVRLNRKSDMVATCSQD 216 (355)
T ss_dssp C------------------CCEEEC----CCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCccccccccccccccCcccEEEE----ccCCceEEEEECCCCCEEEEEeCC
Confidence 8762111000 00000 000 012356889999998876655544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.4e-05 Score=78.73 Aligned_cols=197 Identities=12% Similarity=-0.009 Sum_probs=113.9
Q ss_pred EEEe--cCC-E-EEEEcCCCCCCeEEEEECC--C-CcEEEEeccC-----CCeeEEEEEEeCCEEEEEEeeC--------
Q 019103 110 LLYA--END-T-LFESTGLYGRSSVRRVALE--T-GKVEAINQME-----GSYFGEGLTLLGEKLFQVTWLQ-------- 169 (346)
Q Consensus 110 L~~~--~d~-~-LyeStGlyg~s~V~~iDl~--T-gkv~~~~~l~-----~~~FgeGit~~g~~LY~ltw~~-------- 169 (346)
+.++ ||| + |+.+.. ....|..+|++ + ++...-...+ .......++++|++|+.+....
T Consensus 82 ~~~~~SPDg~~~la~~~~--~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 82 WAGVPRPAGGPLLVFTHF--GDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp EEEECCSSSSCEEEEEBT--TTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred ceeeeecCCCeEEEEEEC--CCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 4454 777 5 565554 35689999988 4 6543333321 1233444556788888776542
Q ss_pred -CEEEEEECCC------CcEEEEEe-cC--CCceeEEeeCCCEEEE-E-CC------CCeEEEEeCC-CCc--EEEEEEe
Q 019103 170 -KTGFIYDQNN------LNKLEEFT-HQ--MKDGWGLATDGKVLFG-S-DG------SSMLYQIDPQ-TLK--VIRKDIV 228 (346)
Q Consensus 170 -~~v~V~D~~t------l~~i~ti~-~~--~peGwGLt~Dg~~Lyv-S-dG------s~~l~vIDp~-T~k--vi~~I~V 228 (346)
..++++|.++ .+. ..+. .+ ......++|||++|+. + ++ ..+|+++|.+ +++ ...++.-
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5899999988 544 3333 21 1133468999998865 4 33 2589999998 563 2333333
Q ss_pred ccCCeeeeeceeeEee-CCEEEEEecCCC--eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCce-eeEEEEeCCCCEE
Q 019103 229 RYKGREVRNLNELEFI-KGEVWANVWQTD--CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDV-LNGIAWDSNRNRI 304 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~-~G~LyaNv~~sn--~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~v-lNGIA~d~~~~~L 304 (346)
+..+. ...+.+. ||++|+..-.++ .|.++|+++|++...... ... ...+.... ...++++++++.+
T Consensus 239 ~~~~~----~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~---~~~---~~~p~w~~~~~~~~~~~~~~~~ 308 (662)
T 3azo_A 239 GPEEA----IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR---EEE---FAGPLWTPGMRWFAPLANGLIA 308 (662)
T ss_dssp ETTBC----EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC---SSB---SSCCCCSTTCCSEEECTTSCEE
T ss_pred CCCce----EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc---ccc---ccCccccccCceEeEeCCCEEE
Confidence 21111 1234454 676665443344 899999999986543321 100 00011110 3568999998888
Q ss_pred EEecCCCCcEEEEEE
Q 019103 305 FVTGKLWPKLYEINL 319 (346)
Q Consensus 305 fVTGK~Wp~l~ev~l 319 (346)
|...+.-.+||.+.+
T Consensus 309 ~~~~~~~~~l~~~d~ 323 (662)
T 3azo_A 309 VVHGKGAAVLGILDP 323 (662)
T ss_dssp EEEBSSSCEEEEEET
T ss_pred EEEEcCccEEEEEEC
Confidence 887664456776654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00012 Score=67.66 Aligned_cols=168 Identities=9% Similarity=-0.065 Sum_probs=107.7
Q ss_pred eEEEEECCCCcEEEEeccCCCeeEEEEEEeC---CEEEEEEeeCCEEEEEECCCCcEEEEEecC---CCceeEEeeCCCE
Q 019103 129 SVRRVALETGKVEAINQMEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ---MKDGWGLATDGKV 202 (346)
Q Consensus 129 ~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g---~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~---~peGwGLt~Dg~~ 202 (346)
.+..+|..+++++..+..+...--..++... +.++++.-.++.+.++|..+.+.+..+... .-....++|||+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~ 184 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL 184 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE
Confidence 5556677789888887765332123344432 334555557899999999999987766432 1245578899999
Q ss_pred EEEECCCCeEEEEeCCCCcEE-EEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhh
Q 019103 203 LFGSDGSSMLYQIDPQTLKVI-RKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRER 280 (346)
Q Consensus 203 LyvSdGs~~l~vIDp~T~kvi-~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~ 280 (346)
|.+...++.|.++|.++++.+ .++..+ +..+ ++.+.+. +|...+..- ++.|.+-|..+++.+..+.. +..
T Consensus 185 lasg~~dg~i~iwd~~~~~~~~~~~~~~-h~~~---v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~--~~~- 256 (343)
T 3lrv_A 185 LALYSPDGILDVYNLSSPDQASSRFPVD-EEAK---IKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT--YTI- 256 (343)
T ss_dssp EEEECTTSCEEEEESSCTTSCCEECCCC-TTSC---EEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC--CBC-
T ss_pred EEEEcCCCEEEEEECCCCCCCccEEecc-CCCC---EEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc--ccc-
Confidence 888777889999999999876 555541 2223 3456665 555444443 55999999999876544421 000
Q ss_pred hhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 281 LVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 281 ~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
+..+... ..++|+|+++.|.+++.
T Consensus 257 ---~~~~~~~--~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 257 ---PEFKTGT--VTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp --------CC--EEEEECTTSSEEEEEET
T ss_pred ---ccccccc--eEEEECCCCCEEEEecC
Confidence 0000001 46999999998888544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.4e-06 Score=76.64 Aligned_cols=199 Identities=8% Similarity=-0.025 Sum_probs=107.4
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCC--cEEEEecc-CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCc---
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETG--KVEAINQM-EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN--- 181 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg--kv~~~~~l-~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~--- 181 (346)
..+.|++|+.++.+.+ .+..|++||+.++ +.+..+.- ........+..+++.| ++.-.++.+.++|..+.+
T Consensus 15 ~~~~~s~~g~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~d~~v~vwd~~~~~~~~ 91 (377)
T 3dwl_C 15 YEHAFNSQRTEFVTTT--ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRI-VTCSQDRNAYVYEKRPDGTWK 91 (377)
T ss_dssp SCCEECSSSSEEECCC--SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCE-EEEETTSSEEEC------CCC
T ss_pred EEEEECCCCCEEEEec--CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEE-EEEeCCCeEEEEEcCCCCcee
Confidence 6899999998777766 4569999999998 44443332 2233332233334444 444567899999998876
Q ss_pred EEEEEe-cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcE---EEEEEeccCCeeeeeceeeEee-CCEEEEEecCC
Q 019103 182 KLEEFT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV---IRKDIVRYKGREVRNLNELEFI-KGEVWANVWQT 255 (346)
Q Consensus 182 ~i~ti~-~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv---i~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s 255 (346)
...++. +. .-....+++|++.|++...++.|.++|.++.+. ...+.-. +..+ ++.+.+. +|..++..-.+
T Consensus 92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-h~~~---v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 92 QTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP-LRST---ILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp CEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS-CCSC---EEEEEECTTSSEEEEEESS
T ss_pred eeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc-cCCC---eEEEEEcCCCCEEEEEeCC
Confidence 333332 22 123344568899998887788999999988763 4444321 1122 3345565 56556655567
Q ss_pred CeEEEEeCCCCeEEEEEECCchh-----hhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 256 DCIARISHEDGVVLGWVLLPNLR-----ERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~-----~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
+.|.+.|..++++.......... .... .........+.++|+|+++.|+..+. ...|+
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~~~~~-d~~i~ 230 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC-AEYPSGGWVHAVGFSPSGNALAYAGH-DSSVT 230 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE-ECCCCSSSEEEEEECTTSSCEEEEET-TTEEC
T ss_pred CEEEEEEEEecccCCCccccccccccchhhhh-hcccCCceEEEEEECCCCCEEEEEeC-CCcEE
Confidence 88999998654422111000000 0000 00011234688999999986666553 34443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00034 Score=63.52 Aligned_cols=194 Identities=8% Similarity=0.044 Sum_probs=118.5
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCC--cEEEEecc-CCCeeEEEEEEe---CCEEEEEEeeCCEEEEEECCC
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETG--KVEAINQM-EGSYFGEGLTLL---GEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg--kv~~~~~l-~~~~FgeGit~~---g~~LY~ltw~~~~v~V~D~~t 179 (346)
....++|++||+++.+++ .+..|++||+.++ +.+..+.- ..... .++.. .+.+.++.-.++.+.++|.++
T Consensus 11 ~V~~~~~s~~g~~las~s--~D~~v~iw~~~~~~~~~~~~l~gH~~~V~--~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCS--SDKTIKIFEVEGETHKLIDTLTGHEGPVW--RVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp CEEEEEECTTSSEEEEEE--TTSCEEEEEBCSSCBCCCEEECCCSSCEE--EEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred ceEEEEECCCCCEEEEEe--CCCEEEEEecCCCCcEEEEEEccccCCeE--EEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 347899999998888877 5669999999754 44444432 22232 34432 134555556789999999987
Q ss_pred Cc--EEEEEec-C-CCceeEEeeC--CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee---------
Q 019103 180 LN--KLEEFTH-Q-MKDGWGLATD--GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--------- 244 (346)
Q Consensus 180 l~--~i~ti~~-~-~peGwGLt~D--g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--------- 244 (346)
.+ .+.++.. . .-....++|+ |+.|.++..+++|.++|..+.+.........+..++ +.+.+.
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v---~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV---NSASWAPATIEEDGE 163 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCE---EEEEECCCC------
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCcc---ceEeecCCccccccc
Confidence 64 4444432 1 1133446676 778888777889999998775322111121111121 223332
Q ss_pred -----CCEEEEEecCCCeEEEEeCCCCe----EEEEEECCchhhhhhhccCCCCceeeEEEEeCCC--CEEEEecCCCCc
Q 019103 245 -----KGEVWANVWQTDCIARISHEDGV----VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNR--NRIFVTGKLWPK 313 (346)
Q Consensus 245 -----~G~LyaNv~~sn~I~vID~~TG~----Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~--~~LfVTGK~Wp~ 313 (346)
+++.+|+.-.++.|.+-|..+++ .+..+.- + .+..++++|+|++ ..+++||-...+
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~---------H----~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG---------H----SDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC---------C----SSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC---------C----CCceEEEEECCCCCCceEEEEEECCCc
Confidence 24566766678889999988776 3333311 1 2346889999986 577888877776
Q ss_pred EEEEEE
Q 019103 314 LYEINL 319 (346)
Q Consensus 314 l~ev~l 319 (346)
+.--.+
T Consensus 231 v~iWd~ 236 (297)
T 2pm7_B 231 CIIWTQ 236 (297)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 655444
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00014 Score=78.03 Aligned_cols=218 Identities=10% Similarity=0.055 Sum_probs=136.2
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGF 173 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~ 173 (346)
+.+.+.+| ......+.|++ |+++++.+ .+..|++||+++++.+..+..+.......+.++++.|+... .++.+.
T Consensus 50 ~~~~~~~~--~~~V~~l~fsp-g~~L~S~s--~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs-~dg~V~ 123 (902)
T 2oaj_A 50 EVVIKLED--RSAIKEMRFVK-GIYLVVIN--AKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGL-QNGSMI 123 (902)
T ss_dssp EEEEECSS--CCCEEEEEEET-TTEEEEEE--TTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEE-TTSCEE
T ss_pred EEEEEcCC--CCCEEEEEEcC-CCEEEEEE--CcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEc-CCCcEE
Confidence 34445555 33347999999 76666666 56799999999999988887555444433444566676665 478999
Q ss_pred EEECCCCcEEEEEec--------------CCCceeEEeeCC-CEEEEECCCCeEEEEeCCCCcEEEEEEecc-CCee---
Q 019103 174 IYDQNNLNKLEEFTH--------------QMKDGWGLATDG-KVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGRE--- 234 (346)
Q Consensus 174 V~D~~tl~~i~ti~~--------------~~peGwGLt~Dg-~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~-~G~p--- 234 (346)
++|.++.+.. .+.. +.-....++|++ ..|.++..+..| ++|.++.+.++++.... .|.+
T Consensus 124 lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~ 201 (902)
T 2oaj_A 124 VYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGD 201 (902)
T ss_dssp EEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCST
T ss_pred EEECCCCccc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcc
Confidence 9999988764 2211 112345567754 567777778889 99999999887775430 0000
Q ss_pred ---------eeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccC-----CCCceeeEEEEe-
Q 019103 235 ---------VRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGY-----NGIDVLNGIAWD- 298 (346)
Q Consensus 235 ---------v~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~-----~~~~vlNGIA~d- 298 (346)
-..++.+.|. +|..+|+.-.++.|.+-|.++|+.+..-.+..+......... ......+.++|.
T Consensus 202 ~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~ 281 (902)
T 2oaj_A 202 FSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMC 281 (902)
T ss_dssp TCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEE
T ss_pred cccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEe
Confidence 1234556665 677788877788999999999998765322111100000000 012256889995
Q ss_pred ---CCCCEEEEecCCC-----CcEEEEEE
Q 019103 299 ---SNRNRIFVTGKLW-----PKLYEINL 319 (346)
Q Consensus 299 ---~~~~~LfVTGK~W-----p~l~ev~l 319 (346)
|++..++++|... ..+..+.+
T Consensus 282 ~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 282 ENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp CSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 4555777777332 25555554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00024 Score=67.17 Aligned_cols=164 Identities=10% Similarity=0.051 Sum_probs=107.3
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCe--eEEEEEEeCCEEEEEEeeC
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSY--FGEGLTLLGEKLFQVTWLQ 169 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~--FgeGit~~g~~LY~ltw~~ 169 (346)
.+.+.++.|... ...++|+|||+++.+++ ++.+.+|+..+++.+..... .... ....+.+++..+..+....
T Consensus 167 ~~~~~~~~~~~~--V~~v~fspdg~~l~s~s---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~ 241 (365)
T 4h5i_A 167 LTEKFEIETRGE--VKDLHFSTDGKVVAYIT---GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK 241 (365)
T ss_dssp TEEEEEEECSSC--CCEEEECTTSSEEEEEC---SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred CcEEEEeCCCCc--eEEEEEccCCceEEecc---ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 355666777544 37999999998777655 35789999999987665543 2222 2333344555566555544
Q ss_pred C---EEEEEECCCCcEE----EEEecCC--CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeecee
Q 019103 170 K---TGFIYDQNNLNKL----EEFTHQM--KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 170 ~---~v~V~D~~tl~~i----~ti~~~~--peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE 240 (346)
. .+..+|..+.... ..+.... -....++|||+.|.+...+++|.++|.++++.+.++.-+ +..+ ++.
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g-H~~~---V~~ 317 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA-HSFA---ITE 317 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS-SSSC---EEE
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc-ccCC---EEE
Confidence 3 5667776555432 2232211 123457899999988777889999999999988776332 1123 335
Q ss_pred eEee-CCEEEEEecCCCeEEEEeCCC
Q 019103 241 LEFI-KGEVWANVWQTDCIARISHED 265 (346)
Q Consensus 241 LE~~-~G~LyaNv~~sn~I~vID~~T 265 (346)
+.|- ||+..|+.-.+++|-+.|..+
T Consensus 318 v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 318 VTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 6665 788888887899999988654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.2e-05 Score=68.96 Aligned_cols=183 Identities=13% Similarity=0.039 Sum_probs=102.9
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeEEEEEE-eCCEEEEEEeeC-----CEEEEEECCCCcEEEEEecC---CCceeEE
Q 019103 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTL-LGEKLFQVTWLQ-----KTGFIYDQNNLNKLEEFTHQ---MKDGWGL 196 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~-~g~~LY~ltw~~-----~~v~V~D~~tl~~i~ti~~~---~peGwGL 196 (346)
+...|.++|+++|+......-+.......+++ ++++|+.+.... ..++++|.++.+...-.... ......+
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFW 245 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEE
T ss_pred CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEE
Confidence 55789999999998765554333333333444 456566554322 47999998765433222211 0122357
Q ss_pred eeCCCEEE-EEC--CCCe--EEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEE-e---------------c
Q 019103 197 ATDGKVLF-GSD--GSSM--LYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWAN-V---------------W 253 (346)
Q Consensus 197 t~Dg~~Ly-vSd--Gs~~--l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaN-v---------------~ 253 (346)
++||++|+ +++ +... |+++|+++.+....... .+. + +.+. ||++++. . .
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~~~-----~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--PPC-----S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--CSE-----E-EEEECSSSSEEEEEECCC----------CCC
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC--CCC-----C-CCccCCCCceEEEecCCcceeeccccccccC
Confidence 89999754 443 4445 99999999876433222 121 1 2232 5654442 2 1
Q ss_pred CCCeEEEEeCCCCeEEEEEECCchhh-h-hhhccCCCCceeeEEEEeCCCCEEEEecCC--CCcEEEEEEee
Q 019103 254 QTDCIARISHEDGVVLGWVLLPNLRE-R-LVAAGYNGIDVLNGIAWDSNRNRIFVTGKL--WPKLYEINLRE 321 (346)
Q Consensus 254 ~sn~I~vID~~TG~Vv~~I~l~~l~~-~-~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~--Wp~l~ev~l~~ 321 (346)
....|.++|+++|++...... ...- . ..+ .......++|+|++++|+.+... -+.||.+.+..
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSAQKLCKH-STSWDVLDGD----RQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPE 384 (396)
T ss_dssp CCCEEEEEETTTTBCCEEEEC-CCCCCCBTTB----SSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCT
T ss_pred CCCcEEEEecccCceEEccCC-CCcccccccc----ccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcc
Confidence 246899999999985322211 1000 0 000 00013446899999998877643 45688877643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.2e-05 Score=72.23 Aligned_cols=163 Identities=12% Similarity=0.124 Sum_probs=96.2
Q ss_pred EEEEEec--CCCCcceeEEEecCCEEEEEcCCCCC-----------CeEEEEECCCCcE-------------EEEeccC-
Q 019103 95 VVNEFPH--DPRAFTQGLLYAENDTLFESTGLYGR-----------SSVRRVALETGKV-------------EAINQME- 147 (346)
Q Consensus 95 Vv~t~ph--d~~~FTqGL~~~~d~~LyeStGlyg~-----------s~V~~iDl~Tgkv-------------~~~~~l~- 147 (346)
++..+|. ...-+..+|+|.+||.||+++|..+. .+|.++|++. ++ ......+
T Consensus 118 i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG-~~p~~npf~~~~~~~~~i~a~G~ 196 (353)
T 2g8s_A 118 VFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG-EIPDDNPFIKESGVRAEIWSYGI 196 (353)
T ss_dssp EEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS-CCCTTCTTTTSTTSCTTEEEECC
T ss_pred EEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC-CCCCCCCCcCCCCCCccEEEEcC
Confidence 3445553 23345679999999999999985432 4799999874 21 0111122
Q ss_pred CCeeEEEEEEe--CCEEEEEEeeCC---EEEEEECCCC-----------------------------cEEEEEecC-CCc
Q 019103 148 GSYFGEGLTLL--GEKLFQVTWLQK---TGFIYDQNNL-----------------------------NKLEEFTHQ-MKD 192 (346)
Q Consensus 148 ~~~FgeGit~~--g~~LY~ltw~~~---~v~V~D~~tl-----------------------------~~i~ti~~~-~pe 192 (346)
.++ .|++.+ .++||+++...+ .+.++..... ..+..+... .|.
T Consensus 197 rnp--~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~ 274 (353)
T 2g8s_A 197 RNP--QGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVS 274 (353)
T ss_dssp SEE--EEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEE
T ss_pred cCc--cceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcc
Confidence 234 456665 589999987643 4444432110 011111111 344
Q ss_pred eeEEeeC------CCEEEEEC-CCCeEEEEeCCCCcEEEEEEe--ccCCeeeeeceeeEee-CCEEEEE-ecCCCeEEEE
Q 019103 193 GWGLATD------GKVLFGSD-GSSMLYQIDPQTLKVIRKDIV--RYKGREVRNLNELEFI-KGEVWAN-VWQTDCIARI 261 (346)
Q Consensus 193 GwGLt~D------g~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V--~~~G~pv~~lNELE~~-~G~LyaN-v~~sn~I~vI 261 (346)
|..+... .+.+|++| ..+.|+.++.+..+++....+ +..++|+. +... ||.||+. .+.++.|.+|
T Consensus 275 G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~----v~~~pdG~lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 275 GMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRD----VRTGPDGYLYVLTDESSGELLKV 350 (353)
T ss_dssp EEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEE----EEECTTSCEEEEECSTTEEEEEE
T ss_pred eeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeE----EEECCCCcEEEEEeCCCCEEEEE
Confidence 5555432 25788888 688999999887666554433 22345654 5554 7899985 5567889998
Q ss_pred eCC
Q 019103 262 SHE 264 (346)
Q Consensus 262 D~~ 264 (346)
.++
T Consensus 351 ~~~ 353 (353)
T 2g8s_A 351 SPR 353 (353)
T ss_dssp EC-
T ss_pred eCC
Confidence 763
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0012 Score=58.58 Aligned_cols=201 Identities=9% Similarity=0.032 Sum_probs=123.0
Q ss_pred EEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEE
Q 019103 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTG 172 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v 172 (346)
++++++. +........+.++++++++.+.+ .+..|++||..+++.+....-.... ...+...+..+. +...++.+
T Consensus 56 ~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs--~Dg~v~iw~~~~~~~~~~~~~h~~~-~~~~~~~~~~l~-s~~~~~~~ 131 (318)
T 4ggc_A 56 DILQLLQMEQPGEYISSVAWIKEGNYLAVGT--SSAEVQLWDVQQQKRLRNMTSHSAR-VGSLSWNSYILS-SGSRSGHI 131 (318)
T ss_dssp CEEEEEECCSTTCCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSC-EEEEEEETTEEE-EEETTSEE
T ss_pred CEEEEEEecCCCCeEEEEEECCCCCEEEEEE--CCCcEEEeecCCceeEEEecCccce-EEEeecCCCEEE-EEecCCce
Confidence 3455553 33455568999999998888877 5569999999999998887654332 234556666544 44556777
Q ss_pred EEEECCCC-cEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe--ccCCeeeeeceeeEee--C
Q 019103 173 FIYDQNNL-NKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV--RYKGREVRNLNELEFI--K 245 (346)
Q Consensus 173 ~V~D~~tl-~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V--~~~G~pv~~lNELE~~--~ 245 (346)
.+++..+. ..+.++... ......+.++++.|+.+..++.|.++|.++.+....... .....++. .+.+. +
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~ 208 (318)
T 4ggc_A 132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK---AVAWCPWQ 208 (318)
T ss_dssp EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEE---EEEECTTS
T ss_pred EeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceE---EEEecCCC
Confidence 77776654 444444421 123334567889888887889999999988664321111 11111221 12222 2
Q ss_pred C-EEEE-EecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec-CCCCcEE
Q 019103 246 G-EVWA-NVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG-KLWPKLY 315 (346)
Q Consensus 246 G-~Lya-Nv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG-K~Wp~l~ 315 (346)
+ .++. .-.....|.+-|..+++........ .....+++.++++.+++++ -....|+
T Consensus 209 ~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~~~sg~~d~~i~ 267 (318)
T 4ggc_A 209 SNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--------------SQVCSILWSPHYKELISGHGFAQNQLV 267 (318)
T ss_dssp TTEEEEEECTTTCEEEEEETTTCCEEEEEECS--------------SCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred CcEEEEEecCCCCEEEEEecccccccccccce--------------eeeeeeeecccccceEEEEEcCCCEEE
Confidence 2 3333 3334556878888888876665331 1346688999999888754 3444444
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.7e-05 Score=73.84 Aligned_cols=189 Identities=9% Similarity=0.075 Sum_probs=115.4
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc-CCCeeEEEEEE--eCCEEEEEEeeCCEEEEEECCCCcE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM-EGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~~~FgeGit~--~g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
....+.+++++.++.+.+ .+..|++||+.+.++ ..+.. .... ..++. .++.++++.-.++.+.++|..+.+.
T Consensus 211 ~~~~~~~~~~~~~l~~g~--~dg~i~~wd~~~~~~-~~~~~h~~~v--~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~ 285 (435)
T 4e54_B 211 WFCSLDVSASSRMVVTGD--NVGNVILLNMDGKEL-WNLRMHKKKV--THVALNPCCDWFLATASVDQTVKIWDLRQVRG 285 (435)
T ss_dssp CCCCEEEETTTTEEEEEC--SSSBEEEEESSSCBC-CCSBCCSSCE--EEEEECTTCSSEEEEEETTSBCCEEETTTCCS
T ss_pred cEEEEEECCCCCEEEEEe--CCCcEeeeccCccee-EEEecccceE--EeeeecCCCceEEEEecCcceeeEEecccccc
Confidence 346789999998777777 456999999975443 33322 2222 33444 4555776777789999999988877
Q ss_pred EEEEecC--CC---ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC--CeeeeeceeeEee-CC-EEEEEe-
Q 019103 183 LEEFTHQ--MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK--GREVRNLNELEFI-KG-EVWANV- 252 (346)
Q Consensus 183 i~ti~~~--~p---eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~--G~pv~~lNELE~~-~G-~LyaNv- 252 (346)
..++... .. ....+++||++|+.+..+++|.++|..+++....+..... +.....+. ..+. ++ .+.+..
T Consensus 286 ~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 364 (435)
T 4e54_B 286 KASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK-AAWHPRYNLIVVGRY 364 (435)
T ss_dssp SSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB-CEECSSSSCEEEECC
T ss_pred cceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE-EEEcCCCCEEEEEEc
Confidence 6665321 11 2233578999998877789999999999887766544221 11100000 1111 12 233322
Q ss_pred ----------cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCc
Q 019103 253 ----------WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPK 313 (346)
Q Consensus 253 ----------~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~ 313 (346)
...+.|.+.|..+|+++..+.-.. ...+..-.||+|+++.| ++|- ..+
T Consensus 365 ~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-----------~~~v~s~~~fspdg~~l-asg~-d~~ 422 (435)
T 4e54_B 365 PDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-----------SSGISSLNEFNPMGDTL-ASAM-GYH 422 (435)
T ss_dssp CCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-----------CCCCCCEEEECTTSSCE-EEEC-SSE
T ss_pred CCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-----------CCcEEEEEEECCCCCEE-EEEc-CCc
Confidence 223568899999999988773211 11133334899998755 4554 344
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.5e-05 Score=77.48 Aligned_cols=195 Identities=7% Similarity=0.010 Sum_probs=123.7
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCC--cEEEEeccCCCeeEEEEEEeC---CEEEEEEeeCCEEEEEECCCCc
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETG--KVEAINQMEGSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg--kv~~~~~l~~~~FgeGit~~g---~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
...+.|++++.++.+++ .+..|++||+.++ +.+....-.... -..++... +.+.++.-.++.+.++|..+.+
T Consensus 12 V~~l~~s~dg~~latg~--~dg~I~vwd~~~~~~~~~~~l~~h~~~-V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~ 88 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCS--SDKTIKIFEVEGETHKLIDTLTGHEGP-VWRVDWAHPKFGTILASCSYDGKVLIWKEENGR 88 (753)
T ss_dssp EEEECCCSSSCCEEEEE--TTTEEEEEEEETTEEEEEEEECCCSSC-EEEEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred eEEEEECCCCCeEEEEE--CCCcEEEEecCCCCCccceeccCCcCc-eEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 36889999998777766 4569999999854 444444322221 23344431 3444455568999999998886
Q ss_pred --EEEEEecC--CCceeEEeeC--CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-----------
Q 019103 182 --KLEEFTHQ--MKDGWGLATD--GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI----------- 244 (346)
Q Consensus 182 --~i~ti~~~--~peGwGLt~D--g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~----------- 244 (346)
.+..+... .-....++++ ++.+++...++.|.++|..+.+.........+..++ +.+.+.
T Consensus 89 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v---~~l~~~p~~~~~~~~~~ 165 (753)
T 3jro_A 89 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV---NSASWAPATIEEDGEHN 165 (753)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCE---EEEEECCCC--------
T ss_pred ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCce---EEEEecCcccccccccc
Confidence 44454421 1234456788 888888888899999999887554444443322222 234443
Q ss_pred ---CCEEEEEecCCCeEEEEeCCCCe----EEEEEECCchhhhhhhccCCCCceeeEEEEeCCC--CEEEEecCCCCcEE
Q 019103 245 ---KGEVWANVWQTDCIARISHEDGV----VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNR--NRIFVTGKLWPKLY 315 (346)
Q Consensus 245 ---~G~LyaNv~~sn~I~vID~~TG~----Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~--~~LfVTGK~Wp~l~ 315 (346)
+|..++....++.|.+.|..++. ++..+.- .....++++|+|++ ..+++||...+.|.
T Consensus 166 ~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-------------h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~ 232 (753)
T 3jro_A 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-------------HSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232 (753)
T ss_dssp -CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC-------------CSSCEEEEEECCCCSSSEEEEEEESSSCEE
T ss_pred cCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC-------------CCCcEEEEEeccCCCCCCEEEEEecCCEEE
Confidence 35666666668889999998874 3333311 12356889999995 56667776777766
Q ss_pred EEEEe
Q 019103 316 EINLR 320 (346)
Q Consensus 316 ev~l~ 320 (346)
--.+.
T Consensus 233 iwd~~ 237 (753)
T 3jro_A 233 IWTQD 237 (753)
T ss_dssp EEEES
T ss_pred EecCC
Confidence 65553
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00081 Score=62.53 Aligned_cols=188 Identities=8% Similarity=0.034 Sum_probs=112.2
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEE--eCCEEEEEEeeCCEEEEEECCCC
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~--~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
......+.|+|++.++.+++ .+..|.+||..+++......+.. ...-..++. +++.| ++.-.++.+.++|..+.
T Consensus 61 ~~~v~~~~~sp~g~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l-~s~s~D~~v~iwd~~~~ 137 (345)
T 3fm0_A 61 QRTVRKVAWSPCGNYLASAS--FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL-ATCSRDKSVWVWEVDEE 137 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEEECTT
T ss_pred CCcEEEEEECCCCCEEEEEE--CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEE-EEEECCCeEEEEECCCC
Confidence 34457999999998887877 45699999999886433333321 111233444 34444 44456789999998776
Q ss_pred cE---EEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecC
Q 019103 181 NK---LEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (346)
Q Consensus 181 ~~---i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~ 254 (346)
+. +..+... .-....++||++.|..+..++.|.++|.++.+.........+..+ ++.+.+. +|..+|..-.
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~---v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST---VWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSC---EEEEEECTTSSEEEEEET
T ss_pred CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCc---eEEEEECCCCCEEEEEeC
Confidence 43 3333321 113345678999888877788999999887764433333222223 3346665 5666666656
Q ss_pred CCeEEEEeCCCC---------------eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 255 TDCIARISHEDG---------------VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 255 sn~I~vID~~TG---------------~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
+.+|.+-|.... +++.++. + ......+.|||+++++.|..++.
T Consensus 215 D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~h~~~v~~v~~~~~~~~l~s~~~ 272 (345)
T 3fm0_A 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS--G----------FHSRTIYDIAWCQLTGALATACG 272 (345)
T ss_dssp TSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC--S----------SCSSCEEEEEECTTTCCEEEEET
T ss_pred CCeEEEeccccCCCCccceeeccCCccceeEEec--C----------CCCCcEEEEEEecCCCEEEEEeC
Confidence 777777764221 1121110 0 01235678999999887665543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0014 Score=59.84 Aligned_cols=182 Identities=11% Similarity=0.018 Sum_probs=115.1
Q ss_pred eEEEecCCEEEEEcCCC--CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee------CCEEEEEECCCC
Q 019103 109 GLLYAENDTLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------QKTGFIYDQNNL 180 (346)
Q Consensus 109 GL~~~~d~~LyeStGly--g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~------~~~v~V~D~~tl 180 (346)
..+.. ++.||+-.|.. ..+.+.++|+.+++-...-+++....+.+++..+++||+.--. .+.+++||+.+.
T Consensus 50 ~~~~~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 50 ACVFW-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp EEEEE-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred EEEEE-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence 44444 67899887742 2468999999999876666676666677788889999998543 367999999876
Q ss_pred cE--EEEEecCCCceeEEeeCCCEEEEECC----------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEE
Q 019103 181 NK--LEEFTHQMKDGWGLATDGKVLFGSDG----------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (346)
Q Consensus 181 ~~--i~ti~~~~peGwGLt~Dg~~LyvSdG----------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~L 248 (346)
+- +...+.+ ..+.+.+.-++.||+.-| .+.++++|+++.+-... .....+.... .+...+++|
T Consensus 129 ~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~-~~~~~~~~i 203 (306)
T 3ii7_A 129 SWHTKPSMLTQ-RCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL---CPMIEARKNH-GLVFVKDKI 203 (306)
T ss_dssp EEEEECCCSSC-CBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEE---CCCSSCCBSC-EEEEETTEE
T ss_pred ceEeCCCCcCC-cceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEEC---CCccchhhcc-eEEEECCEE
Confidence 54 3333333 344455555668888544 56799999999865432 1211122111 244558888
Q ss_pred EEEec-----CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 249 WANVW-----QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 249 yaNv~-----~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
|+-=. ..+.+.+.|+++++ |..++.+.. ...-.+++.. ++++||.|..
T Consensus 204 ~v~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~p~---------~r~~~~~~~~--~~~i~v~GG~ 256 (306)
T 3ii7_A 204 FAVGGQNGLGGLDNVEYYDIKLNE---WKMVSPMPW---------KGVTVKCAAV--GSIVYVLAGF 256 (306)
T ss_dssp EEECCEETTEEBCCEEEEETTTTE---EEECCCCSC---------CBSCCEEEEE--TTEEEEEECB
T ss_pred EEEeCCCCCCCCceEEEeeCCCCc---EEECCCCCC---------CccceeEEEE--CCEEEEEeCc
Confidence 87421 24789999999986 554433321 1111233333 5688888874
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-05 Score=75.71 Aligned_cols=194 Identities=9% Similarity=0.046 Sum_probs=118.6
Q ss_pred ecCCCCcceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEEEEeccC---CCeeEEEEEEeCCEEEEEEeeCCEEEEE
Q 019103 100 PHDPRAFTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAINQME---GSYFGEGLTLLGEKLFQVTWLQKTGFIY 175 (346)
Q Consensus 100 phd~~~FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~---~~~FgeGit~~g~~LY~ltw~~~~v~V~ 175 (346)
||+..- ..|+|+|. +.++.+.+ .+..|.+||+.+++....+.+. .......+.+.++.++++.-.++.|.++
T Consensus 117 ~~~~~V--~~l~~~P~~~~~lasGs--~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 117 PFDRRA--TSLAWHPTHPSTVAVGS--KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp ECSSCE--EEEEECSSCTTCEEEEE--TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred CCCCCE--EEEEEeCCCCCEEEEEe--CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 565443 68999984 46666655 4569999999998765555442 2233322332334444555667999999
Q ss_pred ECCCCcEEEEEecCC----CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-C-CEEE
Q 019103 176 DQNNLNKLEEFTHQM----KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-K-GEVW 249 (346)
Q Consensus 176 D~~tl~~i~ti~~~~----peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~-G~Ly 249 (346)
|.++........... -..+.+++|++.|++...+..|.++|..+.+ +.++.. +..+ ++.+.+. + ..++
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~~~--h~~~---v~~v~~~p~~~~~~ 266 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRM--HKKK---VTHVALNPCCDWFL 266 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCSBC--CSSC---EEEEEECTTCSSEE
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEEec--ccce---EEeeeecCCCceEE
Confidence 987654333222211 1346678999999998888999999987543 222221 1122 3345554 3 3467
Q ss_pred EEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 250 ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 250 aNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
+....+..|.+-|..+++....+.. . ..-....+.++|+|+++.|+.++. .+.|
T Consensus 267 ~s~s~d~~v~iwd~~~~~~~~~~~~---~-------~~h~~~v~~~~~spdg~~l~s~~~-D~~i 320 (435)
T 4e54_B 267 ATASVDQTVKIWDLRQVRGKASFLY---S-------LPHRHPVNAACFSPDGARLLTTDQ-KSEI 320 (435)
T ss_dssp EEEETTSBCCEEETTTCCSSSCCSB---C-------CBCSSCEEECCBCTTSSEEEEEES-SSCE
T ss_pred EEecCcceeeEEecccccccceEEE---e-------eeccccccceeECCCCCeeEEEcC-CCEE
Confidence 7666678888888888764332211 0 011234678999999988776654 3443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0015 Score=59.47 Aligned_cols=197 Identities=13% Similarity=0.140 Sum_probs=120.6
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCC---CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ 169 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~ 169 (346)
.+.+...|..... .+++.. ++.||+-.|..+ .+.+.++|+.+++-...-+++....+.+++..+++||+.--.+
T Consensus 42 W~~~~~~p~~r~~--~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 118 (302)
T 2xn4_A 42 WHQVAELPSRRCR--AGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFD 118 (302)
T ss_dssp EEEECCCSSCCBS--CEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEC
T ss_pred EeEcccCCccccc--ceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCC
Confidence 3444444542222 355554 689999877543 2579999999998776666766556677888899999985433
Q ss_pred -----CEEEEEECCCCcEEE--EEecCCCceeEEeeCCCEEEEECC--------CCeEEEEeCCCCcEEEEEEeccCCee
Q 019103 170 -----KTGFIYDQNNLNKLE--EFTHQMKDGWGLATDGKVLFGSDG--------SSMLYQIDPQTLKVIRKDIVRYKGRE 234 (346)
Q Consensus 170 -----~~v~V~D~~tl~~i~--ti~~~~peGwGLt~Dg~~LyvSdG--------s~~l~vIDp~T~kvi~~I~V~~~G~p 234 (346)
+.+++||+.+.+-.. ..+.+ ..+.+.+.-++.||+.-| .+.++++|+++.+-... .....+
T Consensus 119 ~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~ 194 (302)
T 2xn4_A 119 GSTGLSSVEAYNIKSNEWFHVAPMNTR-RSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI---AEMSTR 194 (302)
T ss_dssp SSCEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEE---CCCSSC
T ss_pred CCccCceEEEEeCCCCeEeecCCCCCc-ccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC---CCCccc
Confidence 579999988765433 33333 344455555678888543 46799999999876532 221112
Q ss_pred eeeceeeEeeCCEEEEEec-----CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 235 VRNLNELEFIKGEVWANVW-----QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 235 v~~lNELE~~~G~LyaNv~-----~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
.... .+...+++||+--. ..+++.+.|+++++- ..++.+.. ...-.+++.. ++++||.|.
T Consensus 195 r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W---~~~~~~~~---------~r~~~~~~~~--~~~i~v~GG 259 (302)
T 2xn4_A 195 RSGA-GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW---RQVADMNM---------CRRNAGVCAV--NGLLYVVGG 259 (302)
T ss_dssp CBSC-EEEEETTEEEEECCBSSSSBCCCEEEEETTTTEE---EEECCCSS---------CCBSCEEEEE--TTEEEEECC
T ss_pred cccc-cEEEECCEEEEECCCCCCcccceEEEEeCCCCCE---eeCCCCCC---------ccccCeEEEE--CCEEEEECC
Confidence 2111 24456888887532 256899999999864 33322211 0111233443 468888887
Q ss_pred CC
Q 019103 310 LW 311 (346)
Q Consensus 310 ~W 311 (346)
..
T Consensus 260 ~~ 261 (302)
T 2xn4_A 260 DD 261 (302)
T ss_dssp BC
T ss_pred cC
Confidence 53
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00025 Score=67.14 Aligned_cols=179 Identities=8% Similarity=-0.003 Sum_probs=119.0
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee-------------CCEEEEE
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL-------------QKTGFIY 175 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~-------------~~~v~V~ 175 (346)
|++...++.+|.+++ ++.+.|.+++.+-... .++.-+. +.-+.++|+.||-+... .+.++++
T Consensus 19 g~~~~~g~~iy~~n~-~d~~~ly~~~~dg~~~-~~l~~~~---~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 19 GLFCESDGEVFFSNT-NDNGRLYAMNIDGSNI-HKLSNDT---AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp TCEEEETTEEEEEEG-GGTTEEEEEETTSCSC-EEEEEEE---EEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred eEEEEeCCEEEEEeC-CCCceEEEEcCCCCCC-EEccCCc---eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 565555679999976 3578999999876543 2322121 35578899999988765 3689999
Q ss_pred ECCCCcEEEEEecCCCceeEEeeCCCEEEEEC----CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEE
Q 019103 176 DQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD----GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN 251 (346)
Q Consensus 176 D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSd----Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaN 251 (346)
|.+..+ ...+... .+..+++++++||.+| +...|+.+|...-. ..+|.-.. .. .+.++++.||-+
T Consensus 94 ~~dg~~-~~~l~~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~-~~------~~~~~g~~iy~t 162 (302)
T 3s25_A 94 KRNGHG-STVLDPD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHY-LF------TCNTSDRYFYYN 162 (302)
T ss_dssp ETTSCC-CEEEECS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSC-CC------CSEEETTEEEEE
T ss_pred eCCCCc-ceEeecC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCC-ce------EeeEECCEEEEE
Confidence 988665 3334432 5567899999999876 57799999987533 33343321 11 256788899977
Q ss_pred ecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC-CCcEEEEEEe
Q 019103 252 VWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL-WPKLYEINLR 320 (346)
Q Consensus 252 v~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~-Wp~l~ev~l~ 320 (346)
.-....|.+++++.+... .| +.+ +..+++.|+++.||-|... -++|+++.+.
T Consensus 163 ~~g~~~Iy~~~l~g~~~~-~l-~~~---------------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ld 215 (302)
T 3s25_A 163 NPKNGQLYRYDTASQSEA-LF-YDC---------------NCYKPVVLDDTNVYYMDVNRDNAIVHVNIN 215 (302)
T ss_dssp CTTTCCEEEEETTTTEEE-EE-ECS---------------CEEEEEEEETTEEEEEEGGGTTEEEEECSS
T ss_pred eCCCceEEEEECCCCCEE-EE-eCC---------------CccceeeecCCEEEEEEcCCCcEEEEEECC
Confidence 666789999999887643 33 111 0124566888888877322 1567777764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00053 Score=60.96 Aligned_cols=182 Identities=15% Similarity=0.120 Sum_probs=114.3
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-eeEEEEEE--eCCEEEEEEeeCCEEEEEECCCCcE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-~FgeGit~--~g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
|..-|.+++++.|-+ |. +++|++||+.||+.+..+.+... ..-..++. +++.| ++.-.++.+.++|.++++.
T Consensus 27 y~~~l~WS~~~~lAv--g~--D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l-~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 27 YLNLVDWSSGNVLAV--AL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp TCBCEEECTTSEEEE--EE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE-EEEETTSEEEEEETTTTEE
T ss_pred cceEEEECCCCEEEE--Ee--CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE-EEEECCCcEEEeecCCcee
Confidence 446789998875444 42 45999999999999988876432 12233444 34444 4445689999999999999
Q ss_pred EEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEE
Q 019103 183 LEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARI 261 (346)
Q Consensus 183 i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vI 261 (346)
+.++......-..++++++.|........+.+.+..+.........+.. ..+ ..+.+. +|+..++.-.+..|.+.
T Consensus 102 ~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS-QEV---CGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS-SCE---EEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCcc-Cce---EEEEEcCCCCEEEEEecCcceeEE
Confidence 9998754345566888899888877777888888776544322222211 111 123232 45555666568889999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEE
Q 019103 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIF 305 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~Lf 305 (346)
|.++++....... ...........+++.+++..++
T Consensus 178 d~~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~ 212 (318)
T 4ggc_A 178 PSAPGEGGWVPLQ---------TFTQHQGAVKAVAWCPWQSNVL 212 (318)
T ss_dssp ESSCBTTBSCCSE---------EECCCCSCEEEEEECTTSTTEE
T ss_pred ECCCCccccccee---------eecccCCceEEEEecCCCCcEE
Confidence 9988763211100 0001122346678888776554
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0028 Score=58.40 Aligned_cols=200 Identities=8% Similarity=0.058 Sum_probs=116.4
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCc--EEEEeccC---CCeeEEEEEEeCCEEEEEEe
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGK--VEAINQME---GSYFGEGLTLLGEKLFQVTW 167 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk--v~~~~~l~---~~~FgeGit~~g~~LY~ltw 167 (346)
.+.++++.-- ..-...+.++++ ++.+.+ .+..|++||+.+++ ....+... .......+.++++.|. +.-
T Consensus 4 ~~~~~~~~~h-~~~v~~~~~s~~--~las~~--~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s 77 (330)
T 2hes_X 4 INLIKSLKLY-KEKIWSFDFSQG--ILATGS--TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA-AGS 77 (330)
T ss_dssp CEEEEEEECC-SSCEEEEEEETT--EEEEEE--SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE-EEE
T ss_pred cccceeeccC-CCceeeeccCCC--EEEEEc--CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE-EEe
Confidence 4556666521 222368889876 556656 55699999999863 44444222 2233332333445444 444
Q ss_pred eCCEEEEEECC-------CCcEEEEEec-C-CCceeEEeeCCCEEEEECCCCeEEEEeCCC----CcEEEEEEeccCCee
Q 019103 168 LQKTGFIYDQN-------NLNKLEEFTH-Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQT----LKVIRKDIVRYKGRE 234 (346)
Q Consensus 168 ~~~~v~V~D~~-------tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T----~kvi~~I~V~~~G~p 234 (346)
.++.+.++|.. +.+.+.++.- . .-....++|||+.|.....+.+|.++|..+ .+.+..+.- +..+
T Consensus 78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~--h~~~ 155 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE--HSQD 155 (330)
T ss_dssp TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC--CSSC
T ss_pred CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc--CCCc
Confidence 57899999974 2345555542 1 123455788999988877788999999843 233333322 2222
Q ss_pred eeeceeeEee-CCEEEEEecCCCeEEEEeCCCC--eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC-EEEEecCC
Q 019103 235 VRNLNELEFI-KGEVWANVWQTDCIARISHEDG--VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN-RIFVTGKL 310 (346)
Q Consensus 235 v~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG--~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~LfVTGK~ 310 (346)
++.+.+. ++.++++.-.++.|.+-|..++ +.+..+.- + ....+.++|+|+++ ..+++|-.
T Consensus 156 ---v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~---------h----~~~v~~~~~~~~~~~~~l~s~s~ 219 (330)
T 2hes_X 156 ---VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG---------H----EGTVWSSDFDKTEGVFRLCSGSD 219 (330)
T ss_dssp ---EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC---------C----SSCEEEEEECCSSSSCEEEEEET
T ss_pred ---eEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC---------C----CCcEEEEEecCCCCeeEEEEEeC
Confidence 3345554 5666666666888888888777 44444421 1 12457899999842 34556555
Q ss_pred CCcEEE
Q 019103 311 WPKLYE 316 (346)
Q Consensus 311 Wp~l~e 316 (346)
..++.-
T Consensus 220 D~~v~i 225 (330)
T 2hes_X 220 DSTVRV 225 (330)
T ss_dssp TSCEEE
T ss_pred CCeEEE
Confidence 555443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00023 Score=73.63 Aligned_cols=184 Identities=10% Similarity=0.072 Sum_probs=106.9
Q ss_pred ceeEEEecCCE--EEEE-cCCCCCCeEEEEECCCCcEEEEeccCCC-eeEEEEEEeCCEEEEEEee------------CC
Q 019103 107 TQGLLYAENDT--LFES-TGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTLLGEKLFQVTWL------------QK 170 (346)
Q Consensus 107 TqGL~~~~d~~--LyeS-tGlyg~s~V~~iDl~Tgkv~~~~~l~~~-~FgeGit~~g~~LY~ltw~------------~~ 170 (346)
..|+.++|||+ +|.. .+..+...|+++|++||+.+.. .++.. ..+...+ +++.||.+... ..
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~ 208 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQH 208 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence 46889999995 3433 2312337899999999997654 22222 1234466 78888877543 46
Q ss_pred EEEEEECCCCcE----EEEEec--CC-CceeEEeeCCCEEEEEC--C--CCeEEEEeCCCCc-EEEEEEeccCCeeeeec
Q 019103 171 TGFIYDQNNLNK----LEEFTH--QM-KDGWGLATDGKVLFGSD--G--SSMLYQIDPQTLK-VIRKDIVRYKGREVRNL 238 (346)
Q Consensus 171 ~v~V~D~~tl~~----i~ti~~--~~-peGwGLt~Dg~~LyvSd--G--s~~l~vIDp~T~k-vi~~I~V~~~G~pv~~l 238 (346)
+|++.+..|... +.+.+- .. -.+..+++||++|+++- + ++.|+++|.++.+ ...++....++.. .
T Consensus 209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~--~- 285 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV--S- 285 (693)
T ss_dssp EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE--E-
T ss_pred EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE--E-
Confidence 799999877643 222221 10 12345789999987732 2 4699999987763 2334444332211 1
Q ss_pred eeeEeeCCEEEEEecC---CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 239 NELEFIKGEVWANVWQ---TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 239 NELE~~~G~LyaNv~~---sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
-+...++++|+.... ...|.++|.+++....|-.+ .+ ...+++ .++++++.|+++..
T Consensus 286 -~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l---~~-------~~~~~~---~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 286 -LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL---IP-------ERQQVL---TVHSGSGYLFAEYM 345 (693)
T ss_dssp -EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE---EC-------CCSSCE---EEEEETTEEEEEEE
T ss_pred -EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE---ec-------CCCCEE---EEEEECCEEEEEEE
Confidence 144557787754332 25799999998764111111 10 112345 56677787776643
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0019 Score=58.74 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=114.2
Q ss_pred eEEEecCCEEEEEcCCCC---CCeEEEEECCCCc---EEEEeccCCCeeEEEEEEeCCEEEEEEee-----CCEEEEEEC
Q 019103 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGK---VEAINQMEGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQ 177 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg---~s~V~~iDl~Tgk---v~~~~~l~~~~FgeGit~~g~~LY~ltw~-----~~~v~V~D~ 177 (346)
+.+.. ++.||+-.|..+ .+.+.++|+.+++ -...-+++....+.+++..+++||+.--. .+.+++||+
T Consensus 57 ~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~ 135 (301)
T 2vpj_A 57 ASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDP 135 (301)
T ss_dssp EEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEET
T ss_pred cEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcC
Confidence 44444 578998877432 3579999999988 65555666555566778889999998432 468999998
Q ss_pred CCCcE--EEEEecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEE
Q 019103 178 NNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVW 249 (346)
Q Consensus 178 ~tl~~--i~ti~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~Ly 249 (346)
.+.+- +...+.+ ..+.+.+.-++.||+.-| .+.++++|+++.+-... .....+.... .+...+++||
T Consensus 136 ~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~-~~~~~~~~i~ 210 (301)
T 2vpj_A 136 NIDQWSMLGDMQTA-REGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV---TPMATKRSGA-GVALLNDHIY 210 (301)
T ss_dssp TTTEEEEEEECSSC-CBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEE---CCCSSCCBSC-EEEEETTEEE
T ss_pred CCCeEEECCCCCCC-cccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeC---CCCCcccccc-eEEEECCEEE
Confidence 77654 3344433 344455544677888643 57899999999876532 2211122111 2445688988
Q ss_pred EEecC-----CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC
Q 019103 250 ANVWQ-----TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW 311 (346)
Q Consensus 250 aNv~~-----sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W 311 (346)
+--.. .++|.+.|+++++-. .++.+.. ...-.+++.. +++|||.|...
T Consensus 211 v~GG~~~~~~~~~v~~yd~~~~~W~---~~~~~p~---------~r~~~~~~~~--~~~i~v~GG~~ 263 (301)
T 2vpj_A 211 VVGGFDGTAHLSSVEAYNIRTDSWT---TVTSMTT---------PRCYVGATVL--RGRLYAIAGYD 263 (301)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEEE---EECCCSS---------CCBSCEEEEE--TTEEEEECCBC
T ss_pred EEeCCCCCcccceEEEEeCCCCcEE---ECCCCCC---------cccceeEEEE--CCEEEEEcCcC
Confidence 74322 578999999999743 2322211 1112233333 46799988754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=9.6e-07 Score=84.81 Aligned_cols=153 Identities=10% Similarity=-0.004 Sum_probs=78.2
Q ss_pred cCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-eeEEEEEE-eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCC
Q 019103 114 ENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS-YFGEGLTL-LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK 191 (346)
Q Consensus 114 ~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-~FgeGit~-~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~p 191 (346)
.++++|++.+ .+..|..+|++||+.+-+...... .......+ .++.||+.+. ++.++.+|++|++++.+++.+
T Consensus 47 ~~g~~~v~~s--~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~-dg~v~a~D~~tG~~~w~~~~~-- 121 (369)
T 2hz6_A 47 VEEPAFLPDP--NDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKK-QDIWYVIDLLTGEKQQTLSSA-- 121 (369)
T ss_dssp ---CCEEECT--TTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEE-EEEEEEECCC-------------
T ss_pred cCCCEEEEeC--CCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeC-CCEEEEEECCCCcEEEEecCC--
Confidence 4567777654 456899999999988666544311 00000122 4677887664 578999999999999988764
Q ss_pred ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEE
Q 019103 192 DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGW 271 (346)
Q Consensus 192 eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~ 271 (346)
.....+++++.+|+...+..|+.+|++|++++-+........+.- .... ..++.+|+... ...|..+|++||+++-.
T Consensus 122 ~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~-~~~~-~~~~~v~~~~~-dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 122 FADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLP-EDDV-DYKMSHFVSNG-DGLVVTVDSESGDVLWI 198 (369)
T ss_dssp -----------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCC-CCCT-TCCCCEEEEET-SCEEEEECTTTCCEEEE
T ss_pred CcccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccc-cCCc-cccceEEEECC-CCEEEEEECCCCcEEEE
Confidence 223467789999997667799999999999876666543111210 0000 01378888764 67899999999999876
Q ss_pred EEC
Q 019103 272 VLL 274 (346)
Q Consensus 272 I~l 274 (346)
.++
T Consensus 199 ~~~ 201 (369)
T 2hz6_A 199 QNY 201 (369)
T ss_dssp EEC
T ss_pred ecC
Confidence 654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00046 Score=62.93 Aligned_cols=147 Identities=14% Similarity=0.008 Sum_probs=88.7
Q ss_pred eeEEEecCCE-EEEEcCCC--CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee----------------
Q 019103 108 QGLLYAENDT-LFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL---------------- 168 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGly--g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~---------------- 168 (346)
..+.++|||+ |+...... +...|.++|+++|+.......+. ...-..+++|+.|+.+...
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccccee
Confidence 5789999994 44333222 45579999999998766555443 3333334467777776532
Q ss_pred ----------CCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECC---------CCeEEEEeCCCCcEEEEEEec
Q 019103 169 ----------QKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDG---------SSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 169 ----------~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdG---------s~~l~vIDp~T~kvi~~I~V~ 229 (346)
...++++|.++.+.+..+..+......+++|| .+|+++. ...|+.+| +.+.. .+.-+
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~ 216 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK 216 (347)
T ss_dssp ---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE
T ss_pred ecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC
Confidence 36799999998876454432224566788999 8888742 34799999 55543 33221
Q ss_pred cCCeeeeeceeeEeeCC-EEE-EEecC------CCeEEEEeCCCCeE
Q 019103 230 YKGREVRNLNELEFIKG-EVW-ANVWQ------TDCIARISHEDGVV 268 (346)
Q Consensus 230 ~~G~pv~~lNELE~~~G-~Ly-aNv~~------sn~I~vID~~TG~V 268 (346)
..+. .+ -.|| +|+ +.... ...|.++| +|+.
T Consensus 217 ---~~~~---~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~ 254 (347)
T 2gop_A 217 ---VSFY---AV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV 254 (347)
T ss_dssp ---ESEE---EE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE
T ss_pred ---ccee---eE-CCCCCEEEEEEccccCCccccceEEEEC--CCce
Confidence 1111 23 2344 454 44322 35788998 6664
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0001 Score=72.29 Aligned_cols=211 Identities=9% Similarity=-0.050 Sum_probs=121.0
Q ss_pred EEEEecCCCCcceeEEEecCCE-EEE---EcCCCCCCeEEEEECCCC--------cEEEEecc----CCCeeEEEEEEe-
Q 019103 96 VNEFPHDPRAFTQGLLYAENDT-LFE---STGLYGRSSVRRVALETG--------KVEAINQM----EGSYFGEGLTLL- 158 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~-Lye---StGlyg~s~V~~iDl~Tg--------kv~~~~~l----~~~~FgeGit~~- 158 (346)
..+++++... ..+.|++||. |++ +++ .+..|++||+.++ +.+..+.. .... .+++..
T Consensus 86 ~~~~~~~~~v--~~l~~spdg~~lav~~~sgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V--~~v~~~p 159 (434)
T 2oit_A 86 GLLVPMKFPI--HHLALSCDNLTLSACMMSSE--YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMV--IDMKWNP 159 (434)
T ss_dssp CEEECCSSCE--EEEEECTTSCEEEEEEEETT--TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSE--EEEEECS
T ss_pred cccccCCCcc--cEEEEcCCCCEEEEEEeccC--CCceEEEEEccccccCCcCCcceeeeeeccCCCCCce--EEEEECC
Confidence 3456664333 7999999986 444 555 5679999998775 22222322 2223 345554
Q ss_pred -CCEEEEEEeeCCEEEEEECCCCcEEEEEe-cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC---C
Q 019103 159 -GEKLFQVTWLQKTGFIYDQNNLNKLEEFT-HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK---G 232 (346)
Q Consensus 159 -g~~LY~ltw~~~~v~V~D~~tl~~i~ti~-~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~---G 232 (346)
++.++++.-.++.+.++|.++.+.+.... +. .......++||+.|++...+++|.++|++ ++...++..... +
T Consensus 160 ~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~ 238 (434)
T 2oit_A 160 TVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESD 238 (434)
T ss_dssp SCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTT
T ss_pred CCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCC
Confidence 34566666778999999999886554332 22 23445568899999998888999999998 666666654321 1
Q ss_pred eeeeeceeeEeeCCEEEE---EecC-----CCeEEEEeCCCCe---EEEEEECCchhhhhhhccCCCCceeeEEEEeCCC
Q 019103 233 REVRNLNELEFIKGEVWA---NVWQ-----TDCIARISHEDGV---VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNR 301 (346)
Q Consensus 233 ~pv~~lNELE~~~G~Lya---Nv~~-----sn~I~vID~~TG~---Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~ 301 (346)
++ .....+.+.....|+ .... ...+.+.|..+.+ -..+..+.++.... .+.+.. .. -+.+-++.
T Consensus 239 ~~-~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~--~~~r~~-~~-~~~~l~dw 313 (434)
T 2oit_A 239 HP-VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGS--CTERQH-HY-YLSYIEEW 313 (434)
T ss_dssp SC-EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCC--CSSSCC-CE-EEEEEGGG
T ss_pred Cc-eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCC--CCCcCc-ce-eeehhccC
Confidence 11 123346666443333 1111 1236666665431 12222222221000 000111 11 24455888
Q ss_pred CEEEEecCCCCcEEEEE
Q 019103 302 NRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 302 ~~LfVTGK~Wp~l~ev~ 318 (346)
+.+|||+.....+--+.
T Consensus 314 ~l~~v~s~~s~dv~vl~ 330 (434)
T 2oit_A 314 DLVLAASAASTEVSILA 330 (434)
T ss_dssp TEEEEEETTCSBCEEEE
T ss_pred CEEEEecCCCCceeEEE
Confidence 99999998888776665
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.01 E-value=3.9e-05 Score=79.51 Aligned_cols=206 Identities=8% Similarity=0.066 Sum_probs=111.9
Q ss_pred eeEEEecCCE-EEEEcCC------CCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC
Q 019103 108 QGLLYAENDT-LFESTGL------YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGl------yg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl 180 (346)
..+.++|||+ |+.++.. .....+.++|+++|+.......+........+++|++|.-. .++.+++.|..+.
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~ 142 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNL 142 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTS
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCC
Confidence 3578899995 4444321 01257889999999865433334444555677788776544 4789999999887
Q ss_pred cEEEEEecCCC---------------------ceeEEeeCCCEEE-EE-CCC----------------------------
Q 019103 181 NKLEEFTHQMK---------------------DGWGLATDGKVLF-GS-DGS---------------------------- 209 (346)
Q Consensus 181 ~~i~ti~~~~p---------------------eGwGLt~Dg~~Ly-vS-dGs---------------------------- 209 (346)
+.. ++..... .+...+|||++|. .+ |.+
T Consensus 143 ~~~-~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 143 PSY-RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp CCE-ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred ceE-EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 644 3322101 1356899999764 43 222
Q ss_pred ------CeEEEEeCCC---CcE--EEEEEeccC--CeeeeeceeeEee-CCEEEEEecC--CC--eEEEEeCCCCeEEEE
Q 019103 210 ------SMLYQIDPQT---LKV--IRKDIVRYK--GREVRNLNELEFI-KGEVWANVWQ--TD--CIARISHEDGVVLGW 271 (346)
Q Consensus 210 ------~~l~vIDp~T---~kv--i~~I~V~~~--G~pv~~lNELE~~-~G~LyaNv~~--sn--~I~vID~~TG~Vv~~ 271 (346)
.+|+++|.++ .+. ..++..... +.. ..+..+.+. ||+++|.... ++ .|.++|+++|+-...
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~ 300 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD-HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN 300 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSC-EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCC-eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence 1688889888 632 223332110 111 123344454 7875443222 22 699999999871000
Q ss_pred EECCchhhhhhhccCCCCc--eeeEEEEeCCCCEEE-Eec--CCCCcEEEEEE
Q 019103 272 VLLPNLRERLVAAGYNGID--VLNGIAWDSNRNRIF-VTG--KLWPKLYEINL 319 (346)
Q Consensus 272 I~l~~l~~~~~~~~~~~~~--vlNGIA~d~~~~~Lf-VTG--K~Wp~l~ev~l 319 (346)
. . .+.....+....-.+ ....++|+|||+.++ ... ..|..||.+.+
T Consensus 301 ~-~-~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 301 C-L-VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp E-C-GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred e-e-EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence 0 0 000000000000001 123678999999876 442 34677887765
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00014 Score=75.63 Aligned_cols=180 Identities=7% Similarity=0.031 Sum_probs=115.8
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEE-----------------------------EeccCCCeeEEEE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEA-----------------------------INQMEGSYFGEGL 155 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~-----------------------------~~~l~~~~FgeGi 155 (346)
-++..++++|||+++.|++ .+.+|+ |..+++.+. ...++...+..++
T Consensus 16 ~~v~sv~~SpDG~~iASas--~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v 91 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTF--PDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC 91 (588)
T ss_dssp SSSCCEEECTTSCEEEECS--SSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE
T ss_pred ccEEEEEECCCCCEEEEEc--CCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE
Confidence 4456789999999999988 566776 665554221 1111223334444
Q ss_pred EE--eCCEEEEEEeeCCEEEEEECCCCcEEEEEecCC------CceeEEeeCCCEEEEECCCCeEEEEeCCCCcE-----
Q 019103 156 TL--LGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM------KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKV----- 222 (346)
Q Consensus 156 t~--~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~------peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kv----- 222 (346)
+. +|..|-+++ .++.+.++|.++ .+.++++.+ -...+++|||+.|+++..+++|.++|.++.+.
T Consensus 92 awSPdG~~LAs~s-~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~ 168 (588)
T 2j04_A 92 KPSPIDDWMAVLS-NNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEF 168 (588)
T ss_dssp EECSSSSCEEEEE-TTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCC
T ss_pred EECCCCCEEEEEe-CCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccc
Confidence 44 445555444 568899999665 666666221 13355779999999998899999999998763
Q ss_pred --EEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeE---EEEEE-CCchhhhhhhccCCCCceeeEEE
Q 019103 223 --IRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVV---LGWVL-LPNLRERLVAAGYNGIDVLNGIA 296 (346)
Q Consensus 223 --i~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~V---v~~I~-l~~l~~~~~~~~~~~~~vlNGIA 296 (346)
+.++..+..|+. ..+.-+.+-.+- .|+.-.++.|.+.|.++++. ..++. .. ......+|
T Consensus 169 i~l~ti~~~~~gh~-~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h-------------~~~V~sva 233 (588)
T 2j04_A 169 YFESSIRLSDAGSK-DWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNAS-------------RRKITDLK 233 (588)
T ss_dssp EEEEEEECSCTTCC-CCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCC-------------SSCCCCEE
T ss_pred eeeeeeeccccccc-ccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccc-------------cCcEEEEE
Confidence 667765554432 223345555333 66666789999999999883 34442 11 12456789
Q ss_pred EeCCCCEEEEec
Q 019103 297 WDSNRNRIFVTG 308 (346)
Q Consensus 297 ~d~~~~~LfVTG 308 (346)
|+ ++.|.+++
T Consensus 234 Fs--g~~LASa~ 243 (588)
T 2j04_A 234 IV--DYKVVLTC 243 (588)
T ss_dssp EE--TTEEEEEC
T ss_pred EE--CCEEEEEe
Confidence 98 57888886
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00027 Score=64.96 Aligned_cols=206 Identities=11% Similarity=0.092 Sum_probs=115.0
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc---CCCeeEEEEEEe---CCEEEEEEee
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM---EGSYFGEGLTLL---GEKLFQVTWL 168 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l---~~~~FgeGit~~---g~~LY~ltw~ 168 (346)
+++++..........+.|+++|+++.+++ .+..|++||+.+++......+ ..... .++.. .+.+.++.-.
T Consensus 4 ~~~~~~~~H~~~V~~v~~s~~g~~lasgs--~D~~v~lwd~~~~~~~~~~~l~gH~~~V~--~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 4 VINTVDTSHEDMIHDAQMDYYGTRLATCS--SDRSVKIFDVRNGGQILIADLRGHEGPVW--QVAWAHPMYGNILASCSY 79 (316)
T ss_dssp ----------CCEEEEEECGGGCEEEEEE--TTTEEEEEEEETTEEEEEEEEECCSSCEE--EEEECCGGGSSCEEEEET
T ss_pred eeeeecccccCeEEEeeEcCCCCEEEEEe--CCCeEEEEEecCCCcEEEEEEcCCCccEE--EEEeCCCCCCCEEEEEEC
Confidence 34444322344457899999998888877 566999999998864322222 22232 34442 1344445556
Q ss_pred CCEEEEEECCCCc--EEEEEec-C-CCceeEEeeC--CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE
Q 019103 169 QKTGFIYDQNNLN--KLEEFTH-Q-MKDGWGLATD--GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (346)
Q Consensus 169 ~~~v~V~D~~tl~--~i~ti~~-~-~peGwGLt~D--g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE 242 (346)
++.+.++|.++.+ .+.++.. . .-....++|| |..|.....++.|.++|..+.......... .++. ...+.+.
T Consensus 80 D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~-~~h~-~~v~~~~ 157 (316)
T 3bg1_A 80 DRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-NAHT-IGCNAVS 157 (316)
T ss_dssp TSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBT-TSSS-SCBCCCE
T ss_pred CCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeee-cccc-CCcceEE
Confidence 7999999998763 4455532 2 1245567777 667777777889999998765322111111 1111 0112222
Q ss_pred ee------------------CCEEEEEecCCCeEEEEeCCCCe---EEEEEECCchhhhhhhccCCCCceeeEEEEeCCC
Q 019103 243 FI------------------KGEVWANVWQTDCIARISHEDGV---VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNR 301 (346)
Q Consensus 243 ~~------------------~G~LyaNv~~sn~I~vID~~TG~---Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~ 301 (346)
+. +++.+|..-.++.|.+-|..++. .+..+ .. + .+..++++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-----~~----h----~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-----EA----H----SDWVRDVAWAPSI 224 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-----BC----C----SSCEEEEECCCCS
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-----cc----C----CCceEEEEecCCC
Confidence 22 13566666667788888877552 22222 10 1 2346889999986
Q ss_pred ---CEEEEecCCCCcEEEEEE
Q 019103 302 ---NRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 302 ---~~LfVTGK~Wp~l~ev~l 319 (346)
..++++|-...+|.--.+
T Consensus 225 ~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 225 GLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp SCSCCEEEEEETTCEEEEEEC
T ss_pred CCCCceEEEEcCCCeEEEEEc
Confidence 356677766666554443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00016 Score=72.33 Aligned_cols=152 Identities=11% Similarity=0.123 Sum_probs=89.5
Q ss_pred EEEEEEe-CCEEEEEEeeCCEEEEEECCCCcE--EEEEecC--CCc------eeEEeeC---CCEEEEECC---------
Q 019103 152 GEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK--LEEFTHQ--MKD------GWGLATD---GKVLFGSDG--------- 208 (346)
Q Consensus 152 geGit~~-g~~LY~ltw~~~~v~V~D~~tl~~--i~ti~~~--~pe------GwGLt~D---g~~LyvSdG--------- 208 (346)
+.+|+.+ +++||++.-..++|++++..+++. +..++.. .+. |++++|| +++||+++.
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~ 108 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK 108 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence 3567764 357999887667899998765543 3333311 112 7778887 899999862
Q ss_pred ----CCeEEEEeCC--CCcEEE-EEEe-ccCCeeeeeceeeEee-CCEEEEEecC-------------------------
Q 019103 209 ----SSMLYQIDPQ--TLKVIR-KDIV-RYKGREVRNLNELEFI-KGEVWANVWQ------------------------- 254 (346)
Q Consensus 209 ----s~~l~vIDp~--T~kvi~-~I~V-~~~G~pv~~lNELE~~-~G~LyaNv~~------------------------- 254 (346)
.+.|+.++.. +.++.. ++.+ +......++.+.|.+. ||+||++...
T Consensus 109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~ 188 (454)
T 1cru_A 109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELN 188 (454)
T ss_dssp CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHH
T ss_pred ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccccccccccc
Confidence 2478777643 222211 1112 1111223456677776 7899999764
Q ss_pred -------CCeEEEEeCCCCeE-----------EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 255 -------TDCIARISHEDGVV-----------LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 255 -------sn~I~vID~~TG~V-----------v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
...|.+||++ |++ ...+.. + ..-|.|+||+|+ .+||++--....-=|
T Consensus 189 aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~-G------------~RNp~gla~dp~-G~L~~~d~g~~~~de 253 (454)
T 1cru_A 189 GKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTL-G------------HRNPQGLAFTPN-GKLLQSEQGPNSDDE 253 (454)
T ss_dssp TTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEB-C------------CSEEEEEEECTT-SCEEEEEECSSSCEE
T ss_pred ccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEE-C------------CCCcceEEECCC-CCEEEEecCCCCCeE
Confidence 2468888875 331 111111 1 236899999995 678888644333333
Q ss_pred EE
Q 019103 317 IN 318 (346)
Q Consensus 317 v~ 318 (346)
|.
T Consensus 254 in 255 (454)
T 1cru_A 254 IN 255 (454)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0024 Score=66.23 Aligned_cols=195 Identities=15% Similarity=0.116 Sum_probs=117.2
Q ss_pred eeEEEecCCEEEEEcCCCC-----------CCeEEEEECCCCcEEEE--eccCC---CeeEEEEEEeCCEEEEEEee---
Q 019103 108 QGLLYAENDTLFESTGLYG-----------RSSVRRVALETGKVEAI--NQMEG---SYFGEGLTLLGEKLFQVTWL--- 168 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg-----------~s~V~~iDl~Tgkv~~~--~~l~~---~~FgeGit~~g~~LY~ltw~--- 168 (346)
.++.++||..||.++...+ ...|.++++.|++.... ...+. ...+..++.+|+.|+...+.
T Consensus 212 ~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 291 (741)
T 1yr2_A 212 SGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD 291 (741)
T ss_dssp CCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC
T ss_pred ccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC
Confidence 4778888855666653222 34699999998863211 12222 23344455567778777664
Q ss_pred -CCEEEEEECCCC--cEEEEEecC-CCceeEEeeCCCEEEE-ECC---CCeEEEEeCCCCc-EEEEEEeccCCeeeeece
Q 019103 169 -QKTGFIYDQNNL--NKLEEFTHQ-MKDGWGLATDGKVLFG-SDG---SSMLYQIDPQTLK-VIRKDIVRYKGREVRNLN 239 (346)
Q Consensus 169 -~~~v~V~D~~tl--~~i~ti~~~-~peGwGLt~Dg~~Lyv-SdG---s~~l~vIDp~T~k-vi~~I~V~~~G~pv~~lN 239 (346)
.+.++++|.++. +....+... ...-..+++||++||+ +|. ...|+.+|.++.+ ....+.-.... .+.
T Consensus 292 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~----~l~ 367 (741)
T 1yr2_A 292 PVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKD----NLE 367 (741)
T ss_dssp SCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSS----EEE
T ss_pred CcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCC----eEE
Confidence 468999998876 314445432 1122225689998877 662 4579999998863 33333222111 233
Q ss_pred eeEeeCCEEEEEecCC--CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC---CcE
Q 019103 240 ELEFIKGEVWANVWQT--DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW---PKL 314 (346)
Q Consensus 240 ELE~~~G~LyaNv~~s--n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W---p~l 314 (346)
.+.+.+++++++.-.. ..|.++|.. |+.+..+.++ ......+++++|++++++++.... +.+
T Consensus 368 ~~~~~~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~------------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i 434 (741)
T 1yr2_A 368 SVGIAGNRLFASYIHDAKSQVLAFDLD-GKPAGAVSLP------------GIGSASGLSGRPGDRHAYLSFSSFTQPATV 434 (741)
T ss_dssp EEEEEBTEEEEEEEETTEEEEEEEETT-SCEEEECBCS------------SSCEEEEEECCBTCSCEEEEEEETTEEEEE
T ss_pred EEEEECCEEEEEEEECCEEEEEEEeCC-CCceeeccCC------------CCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 4566788887765433 358888974 5555555431 123567899999999888764443 467
Q ss_pred EEEEE
Q 019103 315 YEINL 319 (346)
Q Consensus 315 ~ev~l 319 (346)
|...+
T Consensus 435 ~~~d~ 439 (741)
T 1yr2_A 435 LALDP 439 (741)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 76654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00063 Score=69.91 Aligned_cols=194 Identities=11% Similarity=0.141 Sum_probs=113.7
Q ss_pred eeEEEecCCE-EEEEcCCC----------CCCeEEEEECCCCcEE--EEeccC---CCeeEEEEEEeCCEEEEEEeeC--
Q 019103 108 QGLLYAENDT-LFESTGLY----------GRSSVRRVALETGKVE--AINQME---GSYFGEGLTLLGEKLFQVTWLQ-- 169 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGly----------g~s~V~~iDl~Tgkv~--~~~~l~---~~~FgeGit~~g~~LY~ltw~~-- 169 (346)
.++.+++||+ |+.+.... ....|.++|+.|++.. .....+ ...++..++.+|+.|+...+..
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 5899999985 44443211 1346999999998732 111221 2334555666777787776654
Q ss_pred -CEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEE-EC---CCCeEEEEeCCCCcE--EEEEEeccCCeeeeeceee
Q 019103 170 -KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFG-SD---GSSMLYQIDPQTLKV--IRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 170 -~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~Lyv-Sd---Gs~~l~vIDp~T~kv--i~~I~V~~~G~pv~~lNEL 241 (346)
..++++|..+.+. .++... ...-..+.+||+ +|+ +| +..+|+.+|.++.+. ...+.-..... .+..+
T Consensus 251 ~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~---~l~~~ 325 (695)
T 2bkl_A 251 ENDVYWKRPGEKDF-RLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSA---SLLSV 325 (695)
T ss_dssp EEEEEEECTTCSSC-EEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSC---EEEEE
T ss_pred ceEEEEEcCCCCce-EEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCC---eEEEE
Confidence 4889998766543 333322 112223457888 666 66 357999999988653 12222221111 23446
Q ss_pred EeeCCEEEEEecC--CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC---CcEEE
Q 019103 242 EFIKGEVWANVWQ--TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW---PKLYE 316 (346)
Q Consensus 242 E~~~G~LyaNv~~--sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W---p~l~e 316 (346)
.+.++++++..-. ...|.++|+. |+.+..+.++ ......+++++|++++++++.... +.+|.
T Consensus 326 ~~~~~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~------------~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 326 SIVGGHLSLEYLKDATSEVRVATLK-GKPVRTVQLP------------GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp EEETTEEEEEEEETTEEEEEEEETT-CCEEEECCCS------------SSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred EEECCEEEEEEEECCEEEEEEEeCC-CCeeEEecCC------------CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 6678888776543 3458888875 5555555432 122456778888888888775444 34555
Q ss_pred EEE
Q 019103 317 INL 319 (346)
Q Consensus 317 v~l 319 (346)
..+
T Consensus 393 ~d~ 395 (695)
T 2bkl_A 393 TSV 395 (695)
T ss_dssp EET
T ss_pred EEC
Confidence 543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00019 Score=74.87 Aligned_cols=212 Identities=11% Similarity=-0.025 Sum_probs=123.3
Q ss_pred eEEEEEEecCCCCcceeEEEecC--CEEEEEcCCCCCCeEEEEECCCCcEEEEecc---CCCeeEEEEEEeC-CEEEEEE
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAEN--DTLFESTGLYGRSSVRRVALETGKVEAINQM---EGSYFGEGLTLLG-EKLFQVT 166 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d--~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l---~~~~FgeGit~~g-~~LY~lt 166 (346)
.+.+.++.. ...-...+.++++ +.++.+++ .+..|++||+.+++......+ ........+.+.+ +.++++.
T Consensus 43 ~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s--~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg 119 (753)
T 3jro_A 43 HKLIDTLTG-HEGPVWRVDWAHPKFGTILASCS--YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 119 (753)
T ss_dssp EEEEEEECC-CSSCEEEEEECCTTSCSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred CccceeccC-CcCceEEEEecCCCCCCEEEEEe--CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEE
Confidence 345555542 2333479999876 77777777 456999999999973333322 2333333333341 3344555
Q ss_pred eeCCEEEEEECCCCcEEEEEec---C-CCceeEEee-------------CCCEEEEECCCCeEEEEeCCCCcEEEEEEe-
Q 019103 167 WLQKTGFIYDQNNLNKLEEFTH---Q-MKDGWGLAT-------------DGKVLFGSDGSSMLYQIDPQTLKVIRKDIV- 228 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~---~-~peGwGLt~-------------Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V- 228 (346)
-.++.+.++|..+......+.. . .-....+++ |++.++++..++.|.++|..+.+....+..
T Consensus 120 s~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 199 (753)
T 3jro_A 120 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (753)
T ss_dssp ETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred eCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence 5789999999987744333322 1 112233445 578888877788999999877643322221
Q ss_pred -ccCCeeeeeceeeEee-C---CEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019103 229 -RYKGREVRNLNELEFI-K---GEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 229 -~~~G~pv~~lNELE~~-~---G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
..+..++ +.+.+. + |..++....++.|.+.|..+++......+... ........+++|+|+++.
T Consensus 200 ~~~h~~~V---~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~--------~~~~~~v~~l~~spdg~~ 268 (753)
T 3jro_A 200 LEGHSDWV---RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE--------EKFPDVLWRASWSLSGNV 268 (753)
T ss_dssp ECCCSSCE---EEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSS--------SCCSSCCCCEEECTTTCC
T ss_pred ecCCCCcE---EEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEecc--------CCCCCceEEEEEcCCCCE
Confidence 1122233 335554 3 67777777788899999988742111100000 012345678999999887
Q ss_pred EEEecCCCCcEEEEEE
Q 019103 304 IFVTGKLWPKLYEINL 319 (346)
Q Consensus 304 LfVTGK~Wp~l~ev~l 319 (346)
+++++. .+.|+--++
T Consensus 269 l~s~s~-Dg~I~vwd~ 283 (753)
T 3jro_A 269 LALSGG-DNKVTLWKE 283 (753)
T ss_dssp EEEECS-SSCEECCBC
T ss_pred EEEEcC-CCEEEEEec
Confidence 766554 455544433
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0026 Score=57.99 Aligned_cols=148 Identities=9% Similarity=-0.082 Sum_probs=100.0
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee----CCEEEEEECCCCcE--EEEEecC
Q 019103 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL----QKTGFIYDQNNLNK--LEEFTHQ 189 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~----~~~v~V~D~~tl~~--i~ti~~~ 189 (346)
+.||+-.|..+.+.+.+||+.+++-...-.++....+.+++..+++||+.--. .+.+++||+.+.+- +..++.+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 46776666555789999999999876666666655667788889999998543 48899999987654 3334433
Q ss_pred CCceeEEeeCCCEEEEECC-------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC--------
Q 019103 190 MKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-------- 254 (346)
Q Consensus 190 ~peGwGLt~Dg~~LyvSdG-------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~-------- 254 (346)
..+.+.+.-++.||+.-| .+.++++|+.+.+-... .....+.... .+...+++||+--..
T Consensus 92 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 92 -RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK---PSMLTQRCSH-GMVEANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp -CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE---CCCSSCCBSC-EEEEETTEEEEECCEESCTTTCE
T ss_pred -ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC---CCCcCCccee-EEEEECCEEEEECCCCCCCCccc
Confidence 355555555778888543 46799999999876432 2211122111 234568888874321
Q ss_pred -CCeEEEEeCCCCeE
Q 019103 255 -TDCIARISHEDGVV 268 (346)
Q Consensus 255 -sn~I~vID~~TG~V 268 (346)
.+.+.+.|+++++-
T Consensus 167 ~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 167 VLNSCEVYDPATETW 181 (306)
T ss_dssp ECCCEEEEETTTTEE
T ss_pred ccceEEEeCCCCCeE
Confidence 67899999999963
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0017 Score=59.19 Aligned_cols=162 Identities=15% Similarity=0.061 Sum_probs=98.3
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC----CEEEEEECCCCcEEEEEecCCCceeEEeeCCCE
Q 019103 127 RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ----KTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKV 202 (346)
Q Consensus 127 ~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~----~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~ 202 (346)
.+.|.++|+++|+...- .....-.++++|++|+.+.... ..++++|.++.+...-...+.......+|||++
T Consensus 42 ~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~ 117 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRK 117 (347)
T ss_dssp EEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSE
T ss_pred cceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCE
Confidence 56899999999985432 2333334566788887776653 359999998877655444321244557889998
Q ss_pred EEEE-C-------------------C-------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecC
Q 019103 203 LFGS-D-------------------G-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (346)
Q Consensus 203 LyvS-d-------------------G-------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~ 254 (346)
|+.+ + | ...|+++|+++.+.+..+.. . ....+.+. ||.+|+....
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~------~~~~~~~spdg~~~~~~~~ 190 (347)
T 2gop_A 118 LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P------RFSSGIWHRDKIVVNVPHR 190 (347)
T ss_dssp EEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E------TTCEEEEETTEEEEEEECC
T ss_pred EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C------CcccccCCCCeEEEEEecc
Confidence 7664 2 1 46899999999887555544 1 12234444 5544555432
Q ss_pred --------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC-------CCcEEEEE
Q 019103 255 --------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL-------WPKLYEIN 318 (346)
Q Consensus 255 --------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~-------Wp~l~ev~ 318 (346)
...|.++| +|++..... . . .. . +++|+|++|+.++.. ...||.+.
T Consensus 191 ~~~~~~~~~~~l~~~d--~~~~~~l~~--~-~-----------~~-~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 191 EIIPQYFKFWDIYIWE--DGKEEKMFE--K-V-----------SF-Y--AVDSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp CSSCCSSCCEEEEEEE--TTEEEEEEE--E-E-----------SE-E--EEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred cccccccccccEEEeC--CCceEEecc--C-c-----------ce-e--eECCCCCEEEEEEccccCCccccceEEEEC
Confidence 34789999 777543221 1 0 01 1 228888877655432 34677664
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0025 Score=57.86 Aligned_cols=168 Identities=14% Similarity=0.107 Sum_probs=107.8
Q ss_pred eEEEEEEecCCCCcceeEEEecCCEEEEEcCCCC---CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee-
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL- 168 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~- 168 (346)
.+.+...|..... .+.+.. +++||+-.|..+ .+.+.++|+.+++-...-+++....+.+++..+++||+.--.
T Consensus 93 W~~~~~~p~~r~~--~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 169 (301)
T 2vpj_A 93 WYSVAPMNVRRGL--AGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYD 169 (301)
T ss_dssp CEEECCCSSCCBS--CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBC
T ss_pred eEECCCCCCCccc--eeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCC
Confidence 4444445543222 345554 689999877544 357999999999876666666555667788889999998432
Q ss_pred ----CCEEEEEECCCCcEEE--EEecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcEEEEEEeccCCeeee
Q 019103 169 ----QKTGFIYDQNNLNKLE--EFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVR 236 (346)
Q Consensus 169 ----~~~v~V~D~~tl~~i~--ti~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kvi~~I~V~~~G~pv~ 236 (346)
.+.+++||+.+.+-.. ..+.+ ..+.++...+++||+.-| .+.++++|+++.+-..- .....+..
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~r~ 245 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATK-RSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV---TSMTTPRC 245 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEE---CCCSSCCB
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcc-cccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEEC---CCCCCccc
Confidence 4779999987765433 33333 345555555778888654 46899999999876432 22111211
Q ss_pred eceeeEeeCCEEEEEecCC-----CeEEEEeCCCCeE
Q 019103 237 NLNELEFIKGEVWANVWQT-----DCIARISHEDGVV 268 (346)
Q Consensus 237 ~lNELE~~~G~LyaNv~~s-----n~I~vID~~TG~V 268 (346)
.. .+...+++||+--... +.|.+.|+++++-
T Consensus 246 ~~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 246 YV-GATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp SC-EEEEETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred ce-eEEEECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 11 2445588888754222 5788999998863
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.001 Score=69.23 Aligned_cols=180 Identities=7% Similarity=0.044 Sum_probs=120.1
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC------CeeEEEEEEeCCEEEEEEeeCCEEEEEEC
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG------SYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~------~~FgeGit~~g~~LY~ltw~~~~v~V~D~ 177 (346)
.++..+++++|||.++.+++ .+..|.+||.++ .+.... .. .+-.....++|+.|+.++. ++++-++|.
T Consensus 85 ~~~V~~vawSPdG~~LAs~s--~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~-DGtVkIWd~ 158 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLS--NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE-DGELQFFSI 158 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEE--TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET-TSEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEe--CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC-CCEEEEEEC
Confidence 67778999999998777777 456899999655 445444 33 2333344456777777654 799999999
Q ss_pred CCCc-------EEEEEecCC--Ccee----EEeeCCCEEEEECCCCeEEEEeCCCCcE---EEEEEeccCCeeeeeceee
Q 019103 178 NNLN-------KLEEFTHQM--KDGW----GLATDGKVLFGSDGSSMLYQIDPQTLKV---IRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 178 ~tl~-------~i~ti~~~~--peGw----GLt~Dg~~LyvSdGs~~l~vIDp~T~kv---i~~I~V~~~G~pv~~lNEL 241 (346)
++.+ .+.++.... -.+| +.+||| |.++-.+++|+++|.++.+. ..++.=+. . ..+..+
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h---~-~~V~sv 232 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS---R-RKITDL 232 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC---S-SCCCCE
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc---c-CcEEEE
Confidence 9876 367775321 1233 457888 66666789999999988773 23442111 1 234467
Q ss_pred EeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEE--eCCCCEEEEecCC
Q 019103 242 EFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAW--DSNRNRIFVTGKL 310 (346)
Q Consensus 242 E~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~--d~~~~~LfVTGK~ 310 (346)
.+.+++|-++. .+.|.+.|..+++....- . + ..+..++|++ +|++..+.++++.
T Consensus 233 aFsg~~LASa~--~~tIkLWd~~~~~~~~~~-~-g-----------h~~~V~~va~~~s~d~~~La~a~ed 288 (588)
T 2j04_A 233 KIVDYKVVLTC--PGYVHKIDLKNYSISSLK-T-G-----------SLENFHIIPLNHEKESTILLMSNKT 288 (588)
T ss_dssp EEETTEEEEEC--SSEEEEEETTTTEEEEEE-C-S-----------CCSCCCEEEETTCSSCEEEEECSSC
T ss_pred EEECCEEEEEe--CCeEEEEECCCCeEEEEE-c-C-----------CCceEEEEEeeeCCCCCEEEEEcCC
Confidence 77755555554 589999999999874222 1 1 1235678999 9998888888644
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.001 Score=69.00 Aligned_cols=190 Identities=15% Similarity=0.129 Sum_probs=106.4
Q ss_pred eeEEEecCCE-EEEEcCCCCC--CeEEEEECCCCcEEEEeccCCCee-EEEEEEeCCEEEEEEeeC-------------C
Q 019103 108 QGLLYAENDT-LFESTGLYGR--SSVRRVALETGKVEAINQMEGSYF-GEGLTLLGEKLFQVTWLQ-------------K 170 (346)
Q Consensus 108 qGL~~~~d~~-LyeStGlyg~--s~V~~iDl~Tgkv~~~~~l~~~~F-geGit~~g~~LY~ltw~~-------------~ 170 (346)
.++.++|||+ |..+....|. ..|+++|+++|+.+... ++...| +...+.+ +.||...... .
T Consensus 166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence 5788999994 3333222243 58999999999986542 221111 2223445 6777766433 3
Q ss_pred EEEEEECCCCcEEEEEecC---CC---ceeEEeeCCCEEEE-E-CC---CCeEEEEeCCCCcE--EEEEEeccCCeeeee
Q 019103 171 TGFIYDQNNLNKLEEFTHQ---MK---DGWGLATDGKVLFG-S-DG---SSMLYQIDPQTLKV--IRKDIVRYKGREVRN 237 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~---~p---eGwGLt~Dg~~Lyv-S-dG---s~~l~vIDp~T~kv--i~~I~V~~~G~pv~~ 237 (346)
++++.|..+.+...+.-++ .+ .+..+++||++|++ + ++ .+.|+++|.++.+. ..++....++.. .
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~- 321 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW-D- 321 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE-E-
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE-E-
Confidence 5999998877632222111 11 24557899998766 3 23 56999999887621 344443332211 1
Q ss_pred ceeeEeeCCEEEEE-ecC--CCeEEEEeCCCC--eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC-
Q 019103 238 LNELEFIKGEVWAN-VWQ--TDCIARISHEDG--VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW- 311 (346)
Q Consensus 238 lNELE~~~G~LyaN-v~~--sn~I~vID~~TG--~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W- 311 (346)
-+...+++||.. +.. ...|.++|.+++ +....+.- ...++.+++++ ++.++++...-
T Consensus 322 --~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-------------~~~~l~~~~~~--~~~lv~~~~~dg 384 (741)
T 1yr2_A 322 --FVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-------------SKDNLESVGIA--GNRLFASYIHDA 384 (741)
T ss_dssp --EEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-------------CSSEEEEEEEE--BTEEEEEEEETT
T ss_pred --EEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC-------------CCCeEEEEEEE--CCEEEEEEEECC
Confidence 133456677754 322 346999999985 33222211 12367788887 45566554322
Q ss_pred -CcEEEEE
Q 019103 312 -PKLYEIN 318 (346)
Q Consensus 312 -p~l~ev~ 318 (346)
..|+.+.
T Consensus 385 ~~~l~~~~ 392 (741)
T 1yr2_A 385 KSQVLAFD 392 (741)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 3445444
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0018 Score=58.92 Aligned_cols=168 Identities=17% Similarity=0.182 Sum_probs=108.3
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCC---CeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGR---SSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL 168 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~---s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~ 168 (346)
+.+.+...|..... .+.+.. +++||+-.|..+. +.+.++|+.+++-...-+++....+.+++..+++||+.--.
T Consensus 88 ~W~~~~~~p~~r~~--~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 164 (302)
T 2xn4_A 88 QWTSVANMRDRRST--LGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGY 164 (302)
T ss_dssp EEEEECCCSSCCBS--CEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCE
T ss_pred ceeeCCCCCccccc--eEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCC
Confidence 34444445543333 355555 5899988774332 47889999999877766676666667788889999998422
Q ss_pred -------CCEEEEEECCCCcE--EEEEecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcEEEEEEeccCCe
Q 019103 169 -------QKTGFIYDQNNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGR 233 (346)
Q Consensus 169 -------~~~v~V~D~~tl~~--i~ti~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kvi~~I~V~~~G~ 233 (346)
.+.+++||+.+.+- +...+.+ ..+.+++.-++.||+.-| .+.++++|+++.+-.. +.....
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~~~ 240 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ---VADMNM 240 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEE---ECCCSS
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccc-cccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEee---CCCCCC
Confidence 46799999987644 3334433 345555555778888644 4689999999987653 222111
Q ss_pred eeeeceeeEeeCCEEEEEec-----CCCeEEEEeCCCCe
Q 019103 234 EVRNLNELEFIKGEVWANVW-----QTDCIARISHEDGV 267 (346)
Q Consensus 234 pv~~lNELE~~~G~LyaNv~-----~sn~I~vID~~TG~ 267 (346)
+.... .+...+++||+--. ..++|.+.|+++.+
T Consensus 241 ~r~~~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 241 CRRNA-GVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBSC-EEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccccC-eEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 21111 14456888887432 24679999999986
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0066 Score=58.97 Aligned_cols=202 Identities=17% Similarity=0.244 Sum_probs=115.4
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-----CCeeEEEEEEe-----CCEEEEEE--eeCCEEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-----GSYFGEGLTLL-----GEKLFQVT--WLQKTGFIY 175 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-----~~~FgeGit~~-----g~~LY~lt--w~~~~v~V~ 175 (346)
.||++.+||+||++.- +..+|.+++.++|+......++ ...-..||+++ ++.||+.- ...++|..+
T Consensus 35 ~~ia~~pdG~llVter--~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 35 WGLAPLPGGDLLVSSR--DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp EEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred eEEEEcCCCcEEEEEe--cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 5999999999999853 3459999998888764332222 11112457775 57899862 346788888
Q ss_pred ECCC----------CcE-EEEEecC---CCceeEEeeCCCEEEEECC--------------CCeEEEEeCCCCcEE----
Q 019103 176 DQNN----------LNK-LEEFTHQ---MKDGWGLATDGKVLFGSDG--------------SSMLYQIDPQTLKVI---- 223 (346)
Q Consensus 176 D~~t----------l~~-i~ti~~~---~peGwGLt~Dg~~LyvSdG--------------s~~l~vIDp~T~kvi---- 223 (346)
.... .+. +..++.. .+....+.+|| +||++-| ..+|.-||+... +-
T Consensus 113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~nP 190 (347)
T 3das_A 113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPGNP 190 (347)
T ss_dssp EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTTCS
T ss_pred EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCCCC
Confidence 6543 122 2234432 12335567787 6999864 357788887532 10
Q ss_pred ---EEEEeccCCeeeeeceeeEee-CCEEEEEecCC---CeEEEEeCCCCeEEEEEECCchh--hhhh--hccC-CCCce
Q 019103 224 ---RKDIVRYKGREVRNLNELEFI-KGEVWANVWQT---DCIARISHEDGVVLGWVLLPNLR--ERLV--AAGY-NGIDV 291 (346)
Q Consensus 224 ---~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s---n~I~vID~~TG~Vv~~I~l~~l~--~~~~--~~~~-~~~~v 291 (346)
.+|-. .| +.+.+.|.+. +|+||++.-.. ++|.+|-+ |.--+|=...... +... ...+ +...-
T Consensus 191 f~~~~i~a--~G--~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~--G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a 264 (347)
T 3das_A 191 FPGSPVYS--YG--HRNVQGLAWDDKQRLFASEFGQDTWDELNAIKP--GDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS 264 (347)
T ss_dssp STTCCEEE--BC--CSBCCEEEECTTCCEEEEECCSSSCEEEEEECT--TCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred CCCCeEEe--eC--CCCcceEEECCCCCEEEEecCCCCCceeeEEcC--CCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence 01111 11 1244556666 68999876544 45666632 3211111000000 0000 0000 11236
Q ss_pred eeEEEEeCCCCEEEEecCCCCcEEEEEEee
Q 019103 292 LNGIAWDSNRNRIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 292 lNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~ 321 (346)
|.||+|. +..+|++.-.-.+|+.|.|..
T Consensus 265 p~G~~~~--~g~~~~~~l~~~~l~~v~~~~ 292 (347)
T 3das_A 265 PSGIAYA--EGSVWMAGLRGERLWRIPLKG 292 (347)
T ss_dssp EEEEEEE--TTEEEEEESTTCSEEEEEEET
T ss_pred CcceEEE--cCceeeccccCCEEEEEEecC
Confidence 8999998 468999988888999999865
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0024 Score=58.62 Aligned_cols=182 Identities=14% Similarity=0.144 Sum_probs=114.4
Q ss_pred eEEEecCCEEEEEcCC----CC---CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe-----eCCEEEEEE
Q 019103 109 GLLYAENDTLFESTGL----YG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW-----LQKTGFIYD 176 (346)
Q Consensus 109 GL~~~~d~~LyeStGl----yg---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw-----~~~~v~V~D 176 (346)
+++.. ++.||+-.|. .+ .+.+.++|+.+++-....+++....+.+++..+++||+.-- ..+.+++||
T Consensus 65 ~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 143 (308)
T 1zgk_A 65 AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYE 143 (308)
T ss_dssp EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEE
T ss_pred eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEEC
Confidence 55554 6899988774 11 25799999999987666666655556677888999999832 246799999
Q ss_pred CCCCcEEE--EEecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEE
Q 019103 177 QNNLNKLE--EFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (346)
Q Consensus 177 ~~tl~~i~--ti~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~L 248 (346)
+.+.+-.. .++.+ ..+-+.+..++.||+.=| .+.++++|+.+.+-.. +.....+.... .+...+++|
T Consensus 144 ~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~~~-~~~~~~~~i 218 (308)
T 1zgk_A 144 PERDEWHLVAPMLTR-RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNTIRSGA-GVCVLHNCI 218 (308)
T ss_dssp TTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEE---CCCCSSCCBSC-EEEEETTEE
T ss_pred CCCCeEeECCCCCcc-ccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEee---CCCCCCccccc-eEEEECCEE
Confidence 98765433 33333 345555555778888643 4689999999987642 22211222211 234558898
Q ss_pred EEEecC-----CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 249 WANVWQ-----TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 249 yaNv~~-----sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
|+--.. .+.+.+.|+++.+ |..+..+.. ...-.+++.. +++|||.|..
T Consensus 219 yv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~---------~r~~~~~~~~--~~~i~v~GG~ 271 (308)
T 1zgk_A 219 YAAGGYDGQDQLNSVERYDVETET---WTFVAPMKH---------RRSALGITVH--QGRIYVLGGY 271 (308)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTE---EEECCCCSS---------CCBSCEEEEE--TTEEEEECCB
T ss_pred EEEeCCCCCCccceEEEEeCCCCc---EEECCCCCC---------CccceEEEEE--CCEEEEEcCc
Confidence 874322 4789999999986 444433221 0111234443 4689988864
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00058 Score=70.17 Aligned_cols=183 Identities=11% Similarity=0.008 Sum_probs=105.6
Q ss_pred ceeEEEecCCE-E-EEEc-CCCCCCeEEEEECCCCcEEEEeccCCCe-eEEEEEEeCCEEEEEEee------------CC
Q 019103 107 TQGLLYAENDT-L-FEST-GLYGRSSVRRVALETGKVEAINQMEGSY-FGEGLTLLGEKLFQVTWL------------QK 170 (346)
Q Consensus 107 TqGL~~~~d~~-L-yeSt-Glyg~s~V~~iDl~Tgkv~~~~~l~~~~-FgeGit~~g~~LY~ltw~------------~~ 170 (346)
..++.++|||+ | |.+. +..+...|+++|+++|+.+....++... .+...+.+|+.||..... ..
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~ 202 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT 202 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence 36789999995 3 3322 2123479999999999875111233222 233345567777776653 45
Q ss_pred EEEEEECCCCcE----EEEEecC--CCceeEEeeCCCEEEE-EC-C--CCeEEEEeCCCCcEEEEEEeccCCeeeeecee
Q 019103 171 TGFIYDQNNLNK----LEEFTHQ--MKDGWGLATDGKVLFG-SD-G--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNE 240 (346)
Q Consensus 171 ~v~V~D~~tl~~----i~ti~~~--~peGwGLt~Dg~~Lyv-Sd-G--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNE 240 (346)
.+++.|..+.+. +.+.+-. .-.+..+++||++|++ ++ + .++|+++|..+.+.. ++.....+. .. -
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~-~~---~ 277 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAK-YE---V 277 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCC-EE---E
T ss_pred EEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCce-EE---E
Confidence 699999988763 2222111 1135668999998866 32 3 459999998766543 344332211 11 1
Q ss_pred eEeeCCEEEE-EecC--CCeEEEEeCCCCeE---EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 241 LEFIKGEVWA-NVWQ--TDCIARISHEDGVV---LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 241 LE~~~G~Lya-Nv~~--sn~I~vID~~TG~V---v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
+ +.+|.+|+ +++. ...|.++|.++++. ...+.- .....+.+++++ ++.++++..
T Consensus 278 ~-~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~------------~~~~~l~~~~~~--~~~lv~~~~ 337 (695)
T 2bkl_A 278 H-AWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE------------DSSASLLSVSIV--GGHLSLEYL 337 (695)
T ss_dssp E-EETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC------------CSSCEEEEEEEE--TTEEEEEEE
T ss_pred E-ecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC------------CCCCeEEEEEEE--CCEEEEEEE
Confidence 2 23554664 5543 46799999988753 222210 113467889998 455665543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0028 Score=65.49 Aligned_cols=193 Identities=16% Similarity=0.138 Sum_probs=116.2
Q ss_pred eeEEEecCC-EEEEEcCC----------CCCCeEEEEECCCCcE----EEEecc--CCCeeEEEEEEeCCEEEEEEee--
Q 019103 108 QGLLYAEND-TLFESTGL----------YGRSSVRRVALETGKV----EAINQM--EGSYFGEGLTLLGEKLFQVTWL-- 168 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGl----------yg~s~V~~iDl~Tgkv----~~~~~l--~~~~FgeGit~~g~~LY~ltw~-- 168 (346)
.++.++ || .||.++.. .....|.++++.|+.. +..-+- +...++...+.+|+.|++....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 477888 77 56665542 2346799999988752 222111 1223455566678888776543
Q ss_pred -CCEEEEEECCCCc-EEEEEecC-CCceeEEeeCCCEEEE-ECC---CCeEEEEeCCCCcE--EEEEEeccCCeeeeece
Q 019103 169 -QKTGFIYDQNNLN-KLEEFTHQ-MKDGWGLATDGKVLFG-SDG---SSMLYQIDPQTLKV--IRKDIVRYKGREVRNLN 239 (346)
Q Consensus 169 -~~~v~V~D~~tl~-~i~ti~~~-~peGwGLt~Dg~~Lyv-SdG---s~~l~vIDp~T~kv--i~~I~V~~~G~pv~~lN 239 (346)
.+.++++|.++.. ...++... ..+-..+++||++||+ +|. ..+|+.+|.++.+. ...+.-... . .+
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~---~~- 331 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ-Q---VL- 331 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS-S---CE-
T ss_pred CCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC-C---EE-
Confidence 3699999987663 34445432 1122237889988876 663 46899999988654 123322221 1 22
Q ss_pred eeEeeCCEEEEEecCC--CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC---CcE
Q 019103 240 ELEFIKGEVWANVWQT--DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW---PKL 314 (346)
Q Consensus 240 ELE~~~G~LyaNv~~s--n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W---p~l 314 (346)
.+...+++|++..... ..|.++|.+++. ...+.+++ .....++++++++++++++...+ +.+
T Consensus 332 ~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~------------~~~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 332 TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPG------------LGSVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSS------------SSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCC------------CceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 4666777877654332 378999998554 45664422 12345677788888888775443 667
Q ss_pred EEEEE
Q 019103 315 YEINL 319 (346)
Q Consensus 315 ~ev~l 319 (346)
|.+.+
T Consensus 399 ~~~d~ 403 (693)
T 3iuj_A 399 YRFEP 403 (693)
T ss_dssp EEECT
T ss_pred EEEEC
Confidence 77654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0055 Score=56.44 Aligned_cols=164 Identities=10% Similarity=0.011 Sum_probs=93.4
Q ss_pred EEEEEEecC-CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCC-------cEEEEecc-CCCeeEEEEEEeC-CEEE
Q 019103 94 QVVNEFPHD-PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG-------KVEAINQM-EGSYFGEGLTLLG-EKLF 163 (346)
Q Consensus 94 ~Vv~t~phd-~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg-------kv~~~~~l-~~~~FgeGit~~g-~~LY 163 (346)
+.+.++... .......+.|+|++.++.+.+ .+..|++||..++ +.+..+.- .... ..++... ++..
T Consensus 47 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V--~~v~~sp~g~~l 122 (330)
T 2hes_X 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGS--FDSTVSIWAKEESADRTFEMDLLAIIEGHENEV--KGVAWSNDGYYL 122 (330)
T ss_dssp EEEEEECTTCCCSCEEEEEECTTSSEEEEEE--TTSCEEEEEC-------CCCEEEEEEC----CE--EEEEECTTSCEE
T ss_pred EEEEEEecCCccCCEEEEEECCCCCEEEEEe--CCCcEEEEEcccCcCccccceeEEEEcCCCCcE--EEEEECCCCCEE
Confidence 445555311 233347999999998877777 4569999998643 33333321 1222 2344432 3344
Q ss_pred EEEeeCCEEEEEECCC----CcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCC--cEEEEEEeccCCeee
Q 019103 164 QVTWLQKTGFIYDQNN----LNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTL--KVIRKDIVRYKGREV 235 (346)
Q Consensus 164 ~ltw~~~~v~V~D~~t----l~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~--kvi~~I~V~~~G~pv 235 (346)
++.-.++.+.++|..+ .+.+.++... .-....++||++.|+.+..+++|.++|..+. +.+.++. .+..++
T Consensus 123 as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~--~h~~~v 200 (330)
T 2hes_X 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN--GHEGTV 200 (330)
T ss_dssp EEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC--CCSSCE
T ss_pred EEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc--CCCCcE
Confidence 4445689999999842 3455555421 1133456789998888777889999997665 3333322 222222
Q ss_pred eeceeeEeeC---CEEEEEecCCCeEEEEeCCCC
Q 019103 236 RNLNELEFIK---GEVWANVWQTDCIARISHEDG 266 (346)
Q Consensus 236 ~~lNELE~~~---G~LyaNv~~sn~I~vID~~TG 266 (346)
+.+.+.. +...+..-.+.+|.+-|..++
T Consensus 201 ---~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 201 ---WSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp ---EEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred ---EEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 2344442 445555556777888777654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0011 Score=64.56 Aligned_cols=200 Identities=14% Similarity=0.105 Sum_probs=116.9
Q ss_pred eeEEEecC----CEEEEEcCCCCCCeEEEEECCCC----------c-EEEEeccCCCeeEEEEEEeC-CEEEEEEe----
Q 019103 108 QGLLYAEN----DTLFESTGLYGRSSVRRVALETG----------K-VEAINQMEGSYFGEGLTLLG-EKLFQVTW---- 167 (346)
Q Consensus 108 qGL~~~~d----~~LyeStGlyg~s~V~~iDl~Tg----------k-v~~~~~l~~~~FgeGit~~g-~~LY~ltw---- 167 (346)
.||+++|| +.||++-.....++|.++.+..+ + ++..++-....++-.|+... +.||+++-
T Consensus 83 lGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~ 162 (347)
T 3das_A 83 LGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGD 162 (347)
T ss_dssp EEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTC
T ss_pred eeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCC
Confidence 69999974 78998622124579999977652 1 22233434556777788854 58999863
Q ss_pred ---------eCCEEEEEECCCCc-------EEEEEecCC--CceeEEeeCCCEEEEEC-CC---CeEEEEeCCCCc----
Q 019103 168 ---------LQKTGFIYDQNNLN-------KLEEFTHQM--KDGWGLATDGKVLFGSD-GS---SMLYQIDPQTLK---- 221 (346)
Q Consensus 168 ---------~~~~v~V~D~~tl~-------~i~ti~~~~--peGwGLt~Dg~~LyvSd-Gs---~~l~vIDp~T~k---- 221 (346)
..++|+.+|++.-- ....+.++. |.|.++.++ ..||++| |. ++|..|-+-.+=
T Consensus 163 ~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~-G~L~~~d~g~~~~deln~i~~G~nyGwP~ 241 (347)
T 3das_A 163 TGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDK-QRLFASEFGQDTWDELNAIKPGDNYGWPE 241 (347)
T ss_dssp GGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTT-CCEEEEECCSSSCEEEEEECTTCBCCTTT
T ss_pred CccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCC-CCEEEEecCCCCCceeeEEcCCCEecCCc
Confidence 35899999986320 122355553 566666665 5789987 53 455555432110
Q ss_pred EEEEEEeccCCeeee-------eceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEE--EEECCchhhhhhhccCCCCcee
Q 019103 222 VIRKDIVRYKGREVR-------NLNELEFIKGEVWANVWQTDCIARISHEDGVVLG--WVLLPNLRERLVAAGYNGIDVL 292 (346)
Q Consensus 222 vi~~I~V~~~G~pv~-------~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~--~I~l~~l~~~~~~~~~~~~~vl 292 (346)
....-.-...-.|+. ...-|.+.+|.+|+.-+....|.+|..+.++.++ ..-+.+ ...-|
T Consensus 242 ~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~-----------~~gR~ 310 (347)
T 3das_A 242 AEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEG-----------EYGRL 310 (347)
T ss_dssp CCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTT-----------TSSCE
T ss_pred ccCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecC-----------CCCCc
Confidence 000000000000111 2234777899999999988899999887776421 111111 11257
Q ss_pred eEEEEeCCCCEEEEec-CC--------CCcEEEEEE
Q 019103 293 NGIAWDSNRNRIFVTG-KL--------WPKLYEINL 319 (346)
Q Consensus 293 NGIA~d~~~~~LfVTG-K~--------Wp~l~ev~l 319 (346)
-+|+..|||..++.|. +. .++|++|.+
T Consensus 311 ~dv~~~pDG~lyv~td~~~g~g~p~~~ddri~r~~~ 346 (347)
T 3das_A 311 RTVAPAGGDKLWLVTSNTDGRGDAKGGDDRILELEV 346 (347)
T ss_dssp EEEEEEETTEEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred cEEEECCCCcEEEEEcCCCCCCCCCCCCCEEEEEeC
Confidence 8999999986544443 23 357888864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0029 Score=57.29 Aligned_cols=195 Identities=10% Similarity=0.036 Sum_probs=111.2
Q ss_pred EEEEEe-cCCCCcceeEEEec--CCEEEEEcCCCCCCeEEEEECCCCcE--EEEeccCCCeeEEEEEEeC---CEEEEEE
Q 019103 95 VVNEFP-HDPRAFTQGLLYAE--NDTLFESTGLYGRSSVRRVALETGKV--EAINQMEGSYFGEGLTLLG---EKLFQVT 166 (346)
Q Consensus 95 Vv~t~p-hd~~~FTqGL~~~~--d~~LyeStGlyg~s~V~~iDl~Tgkv--~~~~~l~~~~FgeGit~~g---~~LY~lt 166 (346)
.+.++. |. .....+.|++ ++.++.|++ .+..|++||+.+++. +........ .-..++... +.++++.
T Consensus 45 ~~~~l~gH~--~~V~~v~~s~~~~g~~l~s~s--~D~~v~iWd~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~g~~l~s~ 119 (297)
T 2pm7_B 45 LIDTLTGHE--GPVWRVDWAHPKFGTILASCS--YDGKVMIWKEENGRWSQIAVHAVHSA-SVNSVQWAPHEYGPMLLVA 119 (297)
T ss_dssp CCEEECCCS--SCEEEEEECCGGGCSEEEEEE--TTTEEEEEEBSSSCBCCCEEECCCSS-CEEEEEECCGGGCSEEEEE
T ss_pred EEEEEcccc--CCeEEEEecCCCcCCEEEEEc--CCCEEEEEEcCCCceEEEEEeecCCC-ceeEEEeCcCCCCcEEEEE
Confidence 344554 43 3346899974 367777877 456999999998852 222222111 123344432 3344555
Q ss_pred eeCCEEEEEECCCCcE--EEEEec-C-CCceeEEeeC-------------CCEEEEECCCCeEEEEeCCCCc----EEEE
Q 019103 167 WLQKTGFIYDQNNLNK--LEEFTH-Q-MKDGWGLATD-------------GKVLFGSDGSSMLYQIDPQTLK----VIRK 225 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~--i~ti~~-~-~peGwGLt~D-------------g~~LyvSdGs~~l~vIDp~T~k----vi~~ 225 (346)
-.++.+.++|..+... ...+.. . .-....++|+ ++.|..+..+++|.++|..+.+ ...+
T Consensus 120 s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~ 199 (297)
T 2pm7_B 120 SSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (297)
T ss_dssp ETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred ECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEE
Confidence 5689999999876532 122221 1 0122234454 4566666567899999987755 3333
Q ss_pred EEeccCCeeeeeceeeEee-C---CEEEEEecCCCeEEEEeCCCCe--EEEEEECCchhhhhhhccCCCCceeeEEEEeC
Q 019103 226 DIVRYKGREVRNLNELEFI-K---GEVWANVWQTDCIARISHEDGV--VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDS 299 (346)
Q Consensus 226 I~V~~~G~pv~~lNELE~~-~---G~LyaNv~~sn~I~vID~~TG~--Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~ 299 (346)
+. .+..+ ++.+.+. + +..+|+.-.+++|.+-|.+++. ....+ + ... .-....+.++|+|
T Consensus 200 l~--~H~~~---V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~-~-~~~--------~~~~~v~~~~~s~ 264 (297)
T 2pm7_B 200 LE--GHSDW---VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTL-L-KEE--------KFPDVLWRASWSL 264 (297)
T ss_dssp EC--CCSSC---EEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEE-S-SSS--------CCSSCEEEEEECS
T ss_pred ec--CCCCc---eEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceee-e-ecc--------cCCCcEEEEEECC
Confidence 32 12222 3345554 2 4777877778889999887753 11111 1 000 1123568899999
Q ss_pred CCCEEEEecC
Q 019103 300 NRNRIFVTGK 309 (346)
Q Consensus 300 ~~~~LfVTGK 309 (346)
+++.|..++.
T Consensus 265 ~g~~las~~~ 274 (297)
T 2pm7_B 265 SGNVLALSGG 274 (297)
T ss_dssp SSCCEEEEET
T ss_pred CCCEEEEEcC
Confidence 9988776654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00068 Score=66.34 Aligned_cols=190 Identities=9% Similarity=-0.002 Sum_probs=107.3
Q ss_pred cceeEEEecC-CEEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 106 FTQGLLYAEN-DTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 106 FTqGL~~~~d-~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
...++.++|+ +.++.+.+ .+..|++||+.+++..... ............++|+.|+... .++.+.++|.+ ++..
T Consensus 151 ~V~~v~~~p~~~~~las~s--~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 151 MVIDMKWNPTVPSMVAVCL--ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPT-LQEK 226 (434)
T ss_dssp SEEEEEECSSCTTEEEEEE--TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTT-CCEE
T ss_pred ceEEEEECCCCCCEEEEEE--CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccC-Cccc
Confidence 3478999987 57777777 4569999999999654332 2233444433444566676666 67899999998 6666
Q ss_pred EEEecC---CC----ceeEEee--CCCEEEE-ECCC------CeEEEEeCCCC------cEEEEEEecc--CCeeeeece
Q 019103 184 EEFTHQ---MK----DGWGLAT--DGKVLFG-SDGS------SMLYQIDPQTL------KVIRKDIVRY--KGREVRNLN 239 (346)
Q Consensus 184 ~ti~~~---~p----eGwGLt~--Dg~~Lyv-SdGs------~~l~vIDp~T~------kvi~~I~V~~--~G~pv~~lN 239 (346)
.+++.. .+ ....+++ ++..+.+ ++++ ..+.++|..+. ...+.+.+.. .+..-.+.
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~- 305 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHY- 305 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCE-
T ss_pred ccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcce-
Confidence 666532 11 2234444 4444433 3332 24777776543 2233333311 01100111
Q ss_pred eeEee-C-CEEEEEecCCCeEEEEeCCCC--eEEEEEECCchhhhhhhccCCCCceeeEEEEeCC
Q 019103 240 ELEFI-K-GEVWANVWQTDCIARISHEDG--VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSN 300 (346)
Q Consensus 240 ELE~~-~-G~LyaNv~~sn~I~vID~~TG--~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~ 300 (346)
.+.+. + +.+|++++.+++|.+|..... ....+..-..-+..++-.....+..|-|+|+|--
T Consensus 306 ~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~ 370 (434)
T 2oit_A 306 YLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYT 370 (434)
T ss_dssp EEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECC
T ss_pred eeehhccCCEEEEecCCCCceeEEEecCCCCccEEEeccccccccccCCCCCCCceeeEEEEEcc
Confidence 12222 2 589999999999999986442 2333333322222222211224678999999843
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0012 Score=66.78 Aligned_cols=190 Identities=7% Similarity=0.053 Sum_probs=114.8
Q ss_pred EEecCCCCcceeEEEecC------CEEEEEcCCCCCCeEEEEECCCCcEE-----------EEeccCCCeeEEEEEEeCC
Q 019103 98 EFPHDPRAFTQGLLYAEN------DTLFESTGLYGRSSVRRVALETGKVE-----------AINQMEGSYFGEGLTLLGE 160 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d------~~LyeStGlyg~s~V~~iDl~Tgkv~-----------~~~~l~~~~FgeGit~~g~ 160 (346)
++.|.... ...+.|+|+ +.++.|.+ .++.|++||+.+++.. ..+..... ....++...+
T Consensus 202 ~l~~~~~~-V~~v~wsp~~~~~~~~~~LAs~s--~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~-~v~sv~~s~~ 277 (524)
T 2j04_B 202 TIVHSFGE-VWDLKWHEGCHAPHLVGCLSFVS--QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS-LITTFDFLSP 277 (524)
T ss_dssp EEEECCCS-EEEEEECSSCCCSSSSCEEEEEE--TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT-CEEEEEESSS
T ss_pred EEEecCCc-EEEEEECCCCCCCCCCceEEEEe--cCCeEEEEEcCCCccccccceeecCceEEEEcCCC-CEEEEEecCC
Confidence 34443333 368999886 46777777 5679999999887521 01111111 1344555433
Q ss_pred EEEEEEeeCCEEEEEECCCCc-EEEEEecCCCceeEE----eeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCee
Q 019103 161 KLFQVTWLQKTGFIYDQNNLN-KLEEFTHQMKDGWGL----ATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGRE 234 (346)
Q Consensus 161 ~LY~ltw~~~~v~V~D~~tl~-~i~ti~~~~peGwGL----t~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~p 234 (346)
...++.-.++.|.++|.++.+ ...++......=+.+ ++||..+++ +-.+.+|.++|.++.+...++.-...+
T Consensus 278 ~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~-- 355 (524)
T 2j04_B 278 TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG-- 355 (524)
T ss_dssp SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC--
T ss_pred CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc--
Confidence 344455667999999998763 334454321222334 356634444 445889999999887765554422111
Q ss_pred eeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 235 VRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 235 v~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
..++.+.+. +|..+|..-..++|.+.|..+++.+.++.- + ....+.|||+|+++.|...
T Consensus 356 -~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g---------H----~~~V~sva~Sp~g~~l~Sg 415 (524)
T 2j04_B 356 -SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS---------R----ETTITAIGVSRLHPMVLAG 415 (524)
T ss_dssp -CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE---------C----SSCEEEEECCSSCCBCEEE
T ss_pred -CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec---------C----CCceEEEEeCCCCCeEEEE
Confidence 123345666 466677766688899999999987665521 1 1245789999998865543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0045 Score=58.49 Aligned_cols=180 Identities=7% Similarity=-0.001 Sum_probs=115.0
Q ss_pred eEEEecCC-EEEEEc-CCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 109 GLLYAEND-TLFEST-GLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 109 GL~~~~d~-~LyeSt-Glyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
|..+++++ .||.+. -..+...|.+++++......-..-.. +.+.++++.||-.+-....+++.+.+..... ++
T Consensus 108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l 182 (302)
T 3s25_A 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LF 182 (302)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EE
T ss_pred ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EE
Confidence 55666544 788775 12367899999998654322222221 3468899999977666789999998766543 44
Q ss_pred ecCCCceeEEeeCCCEEEEECC--CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEec-CCCeEEEEeC
Q 019103 187 THQMKDGWGLATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW-QTDCIARISH 263 (346)
Q Consensus 187 ~~~~peGwGLt~Dg~~LyvSdG--s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~-~sn~I~vID~ 263 (346)
--+ +....+.|++++||.++. ...|+.+|+...... +-+ ....| .+.+.+++||-+.. ..+.|.+++.
T Consensus 183 ~~~-~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~--~Lt-~~~~~-----~~~~~g~~Iy~~~~~~~~~i~~~~~ 253 (302)
T 3s25_A 183 YDC-NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV--VLT-EANIE-----HYNVYGSLIFYQRGGDNPALCVVKN 253 (302)
T ss_dssp ECS-CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCE--ECS-CSCEE-----EEEEETTEEEEEECSSSCEEEEEET
T ss_pred eCC-CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeE--EEe-CCCcc-----eEEECCCEEEEEECCCCcEEEEEEC
Confidence 222 233346789999999873 358999998875532 222 22122 36777889986543 3567888877
Q ss_pred CCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 264 EDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 264 ~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+- ....+|.. .. +.++++.++.+|-|.-.-..||++++.
T Consensus 254 DG-~~r~~l~~--------------~~---~~~i~i~~d~Iy~td~~~~~i~~~~~d 292 (302)
T 3s25_A 254 DG-TGFKELAK--------------GE---FCNINVTSQYVYFTDFVSNKEYCTSTQ 292 (302)
T ss_dssp TS-CCCEEEEE--------------SC---EEEEEECSSEEEEEETTTCCEEEEESS
T ss_pred CC-CccEEeeC--------------Cc---cceEEEeCCEEEEEECCCCeEEEEECC
Confidence 43 32334421 11 224566789999997666789988754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0034 Score=65.49 Aligned_cols=188 Identities=14% Similarity=0.119 Sum_probs=114.4
Q ss_pred cceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEec----cCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCC
Q 019103 106 FTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQ----MEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 106 FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~----l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~t 179 (346)
....|..+.+|. ||++|- + ..|.++|.+++++..-.. ++. .....+..+ .+.||+.+. +-++++|+++
T Consensus 407 ~v~~i~~d~~g~~lWigt~--~-~Gl~~~d~~~~~~~~~~~~~~~l~~-~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~ 480 (795)
T 4a2l_A 407 NIKAVYVDEKKSLVYIGTH--A-GGLSILHRNSGQVENFNQRNSQLVN-ENVYAILPDGEGNLWLGTL--SALVRFNPEQ 480 (795)
T ss_dssp CEEEEEEETTTTEEEEEET--T-TEEEEEETTTCCEEEECTTTSCCSC-SCEEEEEECSSSCEEEEES--SCEEEEETTT
T ss_pred cEEEEEEcCCCCEEEEEeC--c-CceeEEeCCCCcEEEeecCCCCcCC-CeeEEEEECCCCCEEEEec--CceeEEeCCC
Confidence 346788888888 999974 2 379999999998755432 221 123345555 478999997 5689999988
Q ss_pred CcEEEEEecC-----C--CceeEEeeC-CCEEEEECCCCeEEEEeCCCCcEEEEEEe--ccCCeeeeeceeeEe-eCCEE
Q 019103 180 LNKLEEFTHQ-----M--KDGWGLATD-GKVLFGSDGSSMLYQIDPQTLKVIRKDIV--RYKGREVRNLNELEF-IKGEV 248 (346)
Q Consensus 180 l~~i~ti~~~-----~--peGwGLt~D-g~~LyvSdGs~~l~vIDp~T~kvi~~I~V--~~~G~pv~~lNELE~-~~G~L 248 (346)
.+.. .+... . ..=..+..| .+.||++.. +-|+.+|+++.+. .+.. ...+.+-..++.+.. .+|.|
T Consensus 481 ~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~l 556 (795)
T 4a2l_A 481 RSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGII 556 (795)
T ss_dssp TEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCE
T ss_pred CeEE-EccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCE
Confidence 6543 23211 0 112345444 346887554 6799999988765 3321 111222223334433 37899
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 249 WANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 249 yaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
|+.-. +-|.++|++++++.. +.. .. +.+ .+..++|+.|++|+ ||+++. .-|+.+.
T Consensus 557 WigT~--~Gl~~~d~~~~~~~~-~~~---~~-----gl~-~~~i~~i~~d~~g~-lWi~t~--~Gl~~~~ 611 (795)
T 4a2l_A 557 WVGTR--EGFYCFNEKDKQIKR-YNT---TN-----GLP-NNVVYGILEDSFGR-LWLSTN--RGISCFN 611 (795)
T ss_dssp EEEES--SCEEEEETTTTEEEE-ECG---GG-----TCS-CSCEEEEEECTTSC-EEEEET--TEEEEEE
T ss_pred EEEeC--CCceeECCCCCcEEE-eCC---CC-----CCc-hhheEEEEECCCCC-EEEEcC--CceEEEc
Confidence 98764 379999999997643 321 11 122 23458899998765 666553 3565543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=97.72 E-value=0.001 Score=68.87 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=72.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeE-----EEEEEeCCEEEEEEee--------CCEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFG-----EGLTLLGEKLFQVTWL--------QKTGF 173 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~Fg-----eGit~~g~~LY~ltw~--------~~~v~ 173 (346)
..+.+++||+++.+. +..|..||++||+....+.-.. ..+. -.++++|++|...... .+.++
T Consensus 20 ~~~~w~~dg~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ----ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCEEECSSSEEEEEE----TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccEECCCCcEEEEc----CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 478999999877664 3499999999998655443221 1111 2356678877665432 16788
Q ss_pred EEECCCCcEEEEEecC-CCceeEEeeCCCEE-EEECCCCeEEEEeCCCCcEE
Q 019103 174 IYDQNNLNKLEEFTHQ-MKDGWGLATDGKVL-FGSDGSSMLYQIDPQTLKVI 223 (346)
Q Consensus 174 V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~L-yvSdGs~~l~vIDp~T~kvi 223 (346)
++|.++.+...-.... .-.-..++|||++| |++| +.|+++|.++.+..
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWN--NDIYVKIEPNLPSY 145 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEET--TEEEEESSTTSCCE
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCEEEEEEC--CeEEEEECCCCceE
Confidence 9999998754322211 11233579999865 5565 68999999988754
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0028 Score=58.26 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=103.0
Q ss_pred eEEEecCCEEEEEcCCCC---CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee-----CCEEEEEECCCC
Q 019103 109 GLLYAENDTLFESTGLYG---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL-----QKTGFIYDQNNL 180 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~-----~~~v~V~D~~tl 180 (346)
+++.. +++||+-.|..+ .+.+.++|+.+++-...-+++....+.+++..+++||+.--. .+.+++||+.+.
T Consensus 116 ~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 194 (308)
T 1zgk_A 116 GVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERN 194 (308)
T ss_dssp EEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence 45554 689999877433 357999999999877666676666677788889999998432 477999999876
Q ss_pred cEEE--EEecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEe
Q 019103 181 NKLE--EFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (346)
Q Consensus 181 ~~i~--ti~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv 252 (346)
+-.. ..+.+ ..+.+.+..++.||+--| .+.++++|+++.+-.. +.....+.... .+...+++||+--
T Consensus 195 ~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~---~~~~p~~r~~~-~~~~~~~~i~v~G 269 (308)
T 1zgk_A 195 EWRMITAMNTI-RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTF---VAPMKHRRSAL-GITVHQGRIYVLG 269 (308)
T ss_dssp EEEECCCCSSC-CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE---CCCCSSCCBSC-EEEEETTEEEEEC
T ss_pred eEeeCCCCCCc-cccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEE---CCCCCCCccce-EEEEECCEEEEEc
Confidence 5433 33333 344455555778888654 3789999999987642 22211121111 2445588888743
Q ss_pred c-----CCCeEEEEeCCCCeEE
Q 019103 253 W-----QTDCIARISHEDGVVL 269 (346)
Q Consensus 253 ~-----~sn~I~vID~~TG~Vv 269 (346)
. ..++|.+.|+++.+-.
T Consensus 270 G~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 270 GYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp CBCSSCBCCEEEEEETTTTEEE
T ss_pred CcCCCcccceEEEEcCCCCEEe
Confidence 2 2578999999998643
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0027 Score=58.54 Aligned_cols=157 Identities=16% Similarity=0.149 Sum_probs=102.9
Q ss_pred eeEEEecCCEEEEEcCCC--C---CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee------CCEEEEEE
Q 019103 108 QGLLYAENDTLFESTGLY--G---RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------QKTGFIYD 176 (346)
Q Consensus 108 qGL~~~~d~~LyeStGly--g---~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~------~~~v~V~D 176 (346)
.+++.. +++||+-.|.. + .+.+.++|+.+++-...-+++...++.+++..+++||+.--. .+.+++||
T Consensus 103 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 181 (318)
T 2woz_A 103 FGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYN 181 (318)
T ss_dssp CEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEE
T ss_pred cceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEc
Confidence 355555 58999887742 1 257999999999877766777767788888899999997532 46799999
Q ss_pred CCCCcE--EEEEecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEE
Q 019103 177 QNNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (346)
Q Consensus 177 ~~tl~~--i~ti~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~L 248 (346)
+.+.+- +...+.+ ..+.+.+.-++.||+.-| .+.++++|+++.+-.. +.....+.... .+...+++|
T Consensus 182 ~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~~~-~~~~~~~~i 256 (318)
T 2woz_A 182 PKKGDWKDLAPMKTP-RSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEV---MTEFPQERSSI-SLVSLAGSL 256 (318)
T ss_dssp TTTTEEEEECCCSSC-CBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEE---CCCCSSCCBSC-EEEEETTEE
T ss_pred CCCCEEEECCCCCCC-cccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEE---CCCCCCcccce-EEEEECCEE
Confidence 987654 3333333 244455545668888543 3678999999987643 22211121111 244568888
Q ss_pred EEEec--------------CCCeEEEEeCCCCeEEE
Q 019103 249 WANVW--------------QTDCIARISHEDGVVLG 270 (346)
Q Consensus 249 yaNv~--------------~sn~I~vID~~TG~Vv~ 270 (346)
|+--. ..++|.+.|+++.+=..
T Consensus 257 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 257 YAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp EEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred EEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 86421 24789999999987443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.003 Score=65.70 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=110.9
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe---ccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCc
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN---QMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~---~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
....+..+++|.||++|- + ..|.++|..+++...-. .+... .-..+..+ ++.||+.++. +-++++|+++.+
T Consensus 364 ~v~~i~~d~~g~lWigt~--~-~Gl~~~~~~~~~~~~~~~~~~~~~~-~v~~i~~d~~g~lWigt~~-~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 364 VVSSVCDDGQGKLWIGTD--G-GGINVFENGKRVAIYNKENRELLSN-SVLCSLKDSEGNLWFGTYL-GNISYYNTRLKK 438 (781)
T ss_dssp CEEEEEECTTSCEEEEEB--S-SCEEEEETTEEEEECC-----CCCS-BEEEEEECTTSCEEEEETT-EEEEEECSSSCE
T ss_pred ceEEEEEcCCCCEEEEeC--C-CcEEEEECCCCeEEEccCCCCCCCc-ceEEEEECCCCCEEEEecc-CCEEEEcCCCCc
Confidence 346777888889999983 1 36999999887654321 12211 22345555 6789999874 458999998765
Q ss_pred EEEEEec---CCCceeEEeeC-CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCC
Q 019103 182 KLEEFTH---QMKDGWGLATD-GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTD 256 (346)
Q Consensus 182 ~i~ti~~---~~peGwGLt~D-g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn 256 (346)
. ..+.. ....-+.+..| .+.||++.. +-|+.+|+++.+..........+.+-..++.+..+ +|.||+... .+
T Consensus 439 ~-~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~~ 515 (781)
T 3v9f_A 439 F-QIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF-GG 515 (781)
T ss_dssp E-EECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES-SS
T ss_pred E-EEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc-CC
Confidence 4 33332 11234456666 457888654 67999999987654332221111111223334333 689999875 34
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
-|.++|++++++.. +.. .. +. ..+..++|+.|++++ +|++.
T Consensus 516 Gl~~~~~~~~~~~~-~~~---~~-----~l-~~~~i~~i~~d~~g~-lWi~T 556 (781)
T 3v9f_A 516 GVGIYTPDMQLVRK-FNQ---YE-----GF-CSNTINQIYRSSKGQ-MWLAT 556 (781)
T ss_dssp CEEEECTTCCEEEE-ECT---TT-----TC-SCSCEEEEEECTTSC-EEEEE
T ss_pred CEEEEeCCCCeEEE-ccC---CC-----CC-CCCeeEEEEECCCCC-EEEEE
Confidence 59999999987644 321 11 11 134567899987765 66553
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0034 Score=65.36 Aligned_cols=190 Identities=15% Similarity=0.051 Sum_probs=114.5
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEec--cCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQ--MEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~--l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
....|..+.+|.||++|- + ..|.++|.+++++..-.. ++.. .-..+..+ .++||+.+. +-++++|+++.+.
T Consensus 408 ~v~~i~~d~~g~lWigt~--~-~Gl~~~~~~~~~~~~~~~~~~~~~-~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 408 SVLCSLKDSEGNLWFGTY--L-GNISYYNTRLKKFQIIELEKNELL-DVRVFYEDKNKKIWIGTH--AGVFVIDLASKKV 481 (781)
T ss_dssp BEEEEEECTTSCEEEEET--T-EEEEEECSSSCEEEECCSTTTCCC-CEEEEEECTTSEEEEEET--TEEEEEESSSSSC
T ss_pred ceEEEEECCCCCEEEEec--c-CCEEEEcCCCCcEEEeccCCCCCC-eEEEEEECCCCCEEEEEC--CceEEEeCCCCeE
Confidence 345777777889999874 2 479999999998654331 2222 22345555 579999997 6799999987654
Q ss_pred EEEEecC-----CCceeEEeeC-CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe-eCCEEEEEecCC
Q 019103 183 LEEFTHQ-----MKDGWGLATD-GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-IKGEVWANVWQT 255 (346)
Q Consensus 183 i~ti~~~-----~peGwGLt~D-g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~-~~G~LyaNv~~s 255 (346)
..-.... ...-..+..| .+.||++-..+-|+.+|+++.+... +.. .+|.+-..++.+.. .+|.||+...
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~-~~~l~~~~i~~i~~d~~g~lWi~T~-- 557 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQ-YEGFCSNTINQIYRSSKGQMWLATG-- 557 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECT-TTTCSCSCEEEEEECTTSCEEEEET--
T ss_pred EecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccC-CCCCCCCeeEEEEECCCCCEEEEEC--
Confidence 3322111 1122345554 3467875433459999998876432 222 23333333344433 3789998764
Q ss_pred CeE-EEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 256 DCI-ARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 256 n~I-~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
+-+ .++|+++++.. .+.. .. +.+. +..++|+.|++|+ ||+++.+ -|+.+.
T Consensus 558 ~Glv~~~d~~~~~~~-~~~~---~~-----gl~~-~~i~~i~~d~~g~-lW~~t~~--Gl~~~~ 608 (781)
T 3v9f_A 558 EGLVCFPSARNFDYQ-VFQR---KE-----GLPN-THIRAISEDKNGN-IWASTNT--GISCYI 608 (781)
T ss_dssp TEEEEESCTTTCCCE-EECG---GG-----TCSC-CCCCEEEECSSSC-EEEECSS--CEEEEE
T ss_pred CCceEEECCCCCcEE-Eccc---cC-----CCCC-ceEEEEEECCCCC-EEEEcCC--ceEEEE
Confidence 455 99999999853 3322 11 1222 3458999998765 6666533 366553
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0079 Score=55.31 Aligned_cols=149 Identities=11% Similarity=0.142 Sum_probs=96.6
Q ss_pred cCCEEEEEcCCC----C-----CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC-------CEEEEEEC
Q 019103 114 ENDTLFESTGLY----G-----RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-------KTGFIYDQ 177 (346)
Q Consensus 114 ~d~~LyeStGly----g-----~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~-------~~v~V~D~ 177 (346)
.++.||+-.|.. + .+.+.++|+.+++-...-+++....+.+++..+++||+.--.. +.+++||+
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~ 134 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDP 134 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeC
Confidence 467899887731 1 1238899999998766656665555677888899999985442 57999999
Q ss_pred CCCcEEE--EEecCCCceeEEeeCCCEEEEECC-------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEE
Q 019103 178 NNLNKLE--EFTHQMKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (346)
Q Consensus 178 ~tl~~i~--ti~~~~peGwGLt~Dg~~LyvSdG-------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~L 248 (346)
.+.+-.. ..+.+ ..+.+.+..++.||+-=| .+.++++|+++.+-... .....+.... .+...+++|
T Consensus 135 ~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~-~~~~~~~~i 209 (318)
T 2woz_A 135 VAAKWSEVKNLPIK-VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL---APMKTPRSMF-GVAIHKGKI 209 (318)
T ss_dssp TTTEEEEECCCSSC-EESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEE---CCCSSCCBSC-EEEEETTEE
T ss_pred CCCCEeECCCCCCc-ccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC---CCCCCCcccc-eEEEECCEE
Confidence 8765443 33333 244455555677888443 46799999999876432 1211122111 244568888
Q ss_pred EEEec-----CCCeEEEEeCCCCe
Q 019103 249 WANVW-----QTDCIARISHEDGV 267 (346)
Q Consensus 249 yaNv~-----~sn~I~vID~~TG~ 267 (346)
|+--. ..+.+.+.|+++.+
T Consensus 210 yv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 210 VIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEcCcCCCCccceEEEEECCCCe
Confidence 86432 13678899999986
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0025 Score=58.63 Aligned_cols=156 Identities=15% Similarity=0.079 Sum_probs=101.6
Q ss_pred eEEEecCCEEEEEcCC------CCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee------CCEEEEEE
Q 019103 109 GLLYAENDTLFESTGL------YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL------QKTGFIYD 176 (346)
Q Consensus 109 GL~~~~d~~LyeStGl------yg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~------~~~v~V~D 176 (346)
+++.. +++||+-.|. .-.+.+.++|+.+++-...-+++...++.+++..+++||+.--. .+.+++||
T Consensus 93 ~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd 171 (315)
T 4asc_A 93 GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYD 171 (315)
T ss_dssp EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEE
T ss_pred eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEe
Confidence 45555 5799988773 22467999999999876666677666777888899999998654 46899999
Q ss_pred CCCCcE--EEEEecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEE
Q 019103 177 QNNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (346)
Q Consensus 177 ~~tl~~--i~ti~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~L 248 (346)
+.+.+- +...+.+ ..+-+.+.-+++||+.-| .+.++++|+++.+-... .....+.... .+...+++|
T Consensus 172 ~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~-~~~~~~~~l 246 (315)
T 4asc_A 172 PKKFEWKELAPMQTA-RSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF---EAFPQERSSL-SLVSLVGTL 246 (315)
T ss_dssp TTTTEEEECCCCSSC-CBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE---CCCSSCCBSC-EEEEETTEE
T ss_pred CCCCeEEECCCCCCc-hhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC---CCCCCcccce-eEEEECCEE
Confidence 987644 3333333 244455444667888533 35799999999866432 2211122111 234557888
Q ss_pred EEEec--------------CCCeEEEEeCCCCeEEE
Q 019103 249 WANVW--------------QTDCIARISHEDGVVLG 270 (346)
Q Consensus 249 yaNv~--------------~sn~I~vID~~TG~Vv~ 270 (346)
|+--. ..++|.+.|+++.+=..
T Consensus 247 ~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 282 (315)
T 4asc_A 247 YAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG 282 (315)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred EEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence 86321 23578899999986443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0072 Score=63.00 Aligned_cols=179 Identities=11% Similarity=0.057 Sum_probs=110.3
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc------CCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECC
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM------EGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l------~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~ 178 (346)
....+..+++|.||++|. +.|.++|.++++....... .. .+-..+..+ .++||+.+. +-++++|++
T Consensus 453 ~v~~i~~d~~g~lwigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~d~~g~lWigt~--~Gl~~~~~~ 525 (795)
T 4a2l_A 453 NVYAILPDGEGNLWLGTL----SALVRFNPEQRSFTTIEKEKDGTPVVS-KQITTLFRDSHKRLWIGGE--EGLSVFKQE 525 (795)
T ss_dssp CEEEEEECSSSCEEEEES----SCEEEEETTTTEEEECCBCTTCCBCCC-CCEEEEEECTTCCEEEEES--SCEEEEEEE
T ss_pred eeEEEEECCCCCEEEEec----CceeEEeCCCCeEEEccccccccccCC-ceEEEEEECCCCCEEEEeC--CceEEEeCC
Confidence 446778888889999985 3699999999977544322 11 122345554 478999996 568999988
Q ss_pred CCcEEEEEec-----CCC--ceeEEeeC-CCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEE
Q 019103 179 NLNKLEEFTH-----QMK--DGWGLATD-GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVW 249 (346)
Q Consensus 179 tl~~i~ti~~-----~~p--eGwGLt~D-g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~Ly 249 (346)
+.+. .+.. +.+ .-..+..| .+.||++-.. -|+.+|+++.+.. .... .+|.|-..++.+..+ +|.||
T Consensus 526 ~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~-~~~~-~~gl~~~~i~~i~~d~~g~lW 600 (795)
T 4a2l_A 526 GLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQIK-RYNT-TNGLPNNVVYGILEDSFGRLW 600 (795)
T ss_dssp TTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTTEEE-EECG-GGTCSCSCEEEEEECTTSCEE
T ss_pred CCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCCcEE-EeCC-CCCCchhheEEEEECCCCCEE
Confidence 7765 3431 111 23445554 3457774322 7999999887553 2322 234443334444333 68999
Q ss_pred EEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCc-eeeEEEEeCCCCEEEEec
Q 019103 250 ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGID-VLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 250 aNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~-vlNGIA~d~~~~~LfVTG 308 (346)
+.. .+-|.++||+++++. .++. .. +.+... ..++++.+++|. ||+.+
T Consensus 601 i~t--~~Gl~~~~~~~~~~~-~~~~---~d-----Gl~~~~f~~~~~~~~~~G~-l~~g~ 648 (795)
T 4a2l_A 601 LST--NRGISCFNPETEKFR-NFTE---SD-----GLQSNQFNTASYCRTSVGQ-MYFGG 648 (795)
T ss_dssp EEE--TTEEEEEETTTTEEE-EECG---GG-----TCSCSCEEEEEEEECTTSC-EEEEE
T ss_pred EEc--CCceEEEcCCCCcEE-EcCC---cC-----CCccccCccCceeECCCCe-EEEec
Confidence 876 578999999999864 4432 11 112222 246777877765 55544
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00021 Score=74.19 Aligned_cols=141 Identities=10% Similarity=0.092 Sum_probs=104.0
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEEEe------------------------CCEEEEEEeeC-------------C
Q 019103 128 SSVRRVALETGKVEAINQMEGSYFGEGLTLL------------------------GEKLFQVTWLQ-------------K 170 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~------------------------g~~LY~ltw~~-------------~ 170 (346)
+....+|.+|.++.-++.++.+.=..|.... -+.+.+-+|+. +
T Consensus 217 ~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~ 296 (638)
T 3sbq_A 217 TMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG 296 (638)
T ss_dssp EEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred eEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence 3556789999999888766543211222111 13566667762 2
Q ss_pred --EEEEEECCC----C-cEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCc-------------EEEEEEe
Q 019103 171 --TGFIYDQNN----L-NKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLK-------------VIRKDIV 228 (346)
Q Consensus 171 --~v~V~D~~t----l-~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~k-------------vi~~I~V 228 (346)
.+-|+|... . ..+.-+|++ .|.|.-++|||+++++++ .+.++.|||.+.+. +.+.+++
T Consensus 297 g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~ 376 (638)
T 3sbq_A 297 DSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL 376 (638)
T ss_dssp TCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC
T ss_pred CCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC
Confidence 578999876 2 456677886 799999999999999999 59999999988532 2667777
Q ss_pred ccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCC----------eEEEEEEC
Q 019103 229 RYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDG----------VVLGWVLL 274 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG----------~Vv~~I~l 274 (346)
|- .|.+ .+|+ +|.+|.+.+.+..|++-+.++. .|+.++|+
T Consensus 377 Gl--GPlH----t~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv 427 (638)
T 3sbq_A 377 GL--GPLH----TTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDV 427 (638)
T ss_dssp CS--CEEE----EEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEEC
T ss_pred CC--cccE----EEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeecccc
Confidence 65 3665 6676 5799999999999999777765 79999988
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0055 Score=56.31 Aligned_cols=150 Identities=11% Similarity=0.080 Sum_probs=98.4
Q ss_pred cCCEEEEEcCCC----C-----CCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee--------CCEEEEEE
Q 019103 114 ENDTLFESTGLY----G-----RSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL--------QKTGFIYD 176 (346)
Q Consensus 114 ~d~~LyeStGly----g-----~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~--------~~~v~V~D 176 (346)
-++.||+-.|.. + .+.+.++|+.+++-...-+++....+.+++..+++||+.--. .+.+++||
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEEC
Confidence 467888877631 1 134889999999876665677666677788899999998432 36799999
Q ss_pred CCCCcE--EEEEecCCCceeEEeeCCCEEEEECC-------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCE
Q 019103 177 QNNLNK--LEEFTHQMKDGWGLATDGKVLFGSDG-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGE 247 (346)
Q Consensus 177 ~~tl~~--i~ti~~~~peGwGLt~Dg~~LyvSdG-------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~ 247 (346)
+.+.+- +..++.+ ..+.+.+.-++.||+.=| .+.++++|+.+.+-.. +.....|.... .....+++
T Consensus 124 ~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~~~-~~~~~~~~ 198 (315)
T 4asc_A 124 RLSFKWGESDPLPYV-VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAPMQTARSLF-GATVHDGR 198 (315)
T ss_dssp TTTTEEEECCCCSSC-CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE---CCCCSSCCBSC-EEEEETTE
T ss_pred CCCCcEeECCCCCCc-ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE---CCCCCCchhce-EEEEECCE
Confidence 987643 3333433 355555556677888544 3689999999987643 22211222111 13455888
Q ss_pred EEEEecC-----CCeEEEEeCCCCeE
Q 019103 248 VWANVWQ-----TDCIARISHEDGVV 268 (346)
Q Consensus 248 LyaNv~~-----sn~I~vID~~TG~V 268 (346)
||+--.. .+.+.+.|+++++-
T Consensus 199 iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 199 IIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp EEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred EEEEeccCCCCccceEEEEECCCCeE
Confidence 8874322 35799999999853
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0014 Score=67.25 Aligned_cols=173 Identities=11% Similarity=0.016 Sum_probs=101.7
Q ss_pred EEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEe-e----
Q 019103 95 VVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTW-L---- 168 (346)
Q Consensus 95 Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw-~---- 168 (346)
-+...|.....|..+.++..||+||+..|. ..+.+.+||+.+++-...-.++..-...+++.. +++||+.-- .
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~-~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~ 311 (656)
T 1k3i_A 233 DRTVTVTKHDMFCPGISMDGNGQIVVTGGN-DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGV 311 (656)
T ss_dssp CCEEEECSCCCSSCEEEECTTSCEEEECSS-STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSS
T ss_pred eCcccCCCCCCccccccCCCCCCEEEeCCC-CCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCc
Confidence 344555545566667888888999999884 445899999999987665566544445566776 889999854 2
Q ss_pred -CCEEEEEECCCCcEEEE-----EecCCCceeEEeeCCCEEEE----------ECCCCeEEEEeCCCCcEEEEEEeccCC
Q 019103 169 -QKTGFIYDQNNLNKLEE-----FTHQMKDGWGLATDGKVLFG----------SDGSSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 169 -~~~v~V~D~~tl~~i~t-----i~~~~peGwGLt~Dg~~Lyv----------SdGs~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
.+.+.+||+++.+-... .+......-++...++++|+ .+..+.+..+|+++.+-.........+
T Consensus 312 ~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~ 391 (656)
T 1k3i_A 312 FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSN 391 (656)
T ss_dssp CCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEET
T ss_pred ccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccc
Confidence 26799999987654332 11110000011112233333 233678999999988755332221100
Q ss_pred -----eeeeecee--eEeeCCEEEEEecC--------CC---eEEEEeCCCCeEE
Q 019103 233 -----REVRNLNE--LEFIKGEVWANVWQ--------TD---CIARISHEDGVVL 269 (346)
Q Consensus 233 -----~pv~~lNE--LE~~~G~LyaNv~~--------sn---~I~vID~~TG~Vv 269 (346)
.+... .. +...+|+||+-=.. .+ .|.+.|+++.+-.
T Consensus 392 ~~~~~~~~~~-~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 445 (656)
T 1k3i_A 392 RGVAPDAMCG-NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT 445 (656)
T ss_dssp TEECCCCBTC-EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE
T ss_pred cccCCCCCCC-ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee
Confidence 00000 01 11247888875321 23 6778889888743
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.013 Score=54.59 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=95.4
Q ss_pred EEEecCCEEEEEcCCCCCCeEEEEECCC--CcEEEEeccC-CCeeEEEEEEeCCEEEEEEee----------CCEEEEEE
Q 019103 110 LLYAENDTLFESTGLYGRSSVRRVALET--GKVEAINQME-GSYFGEGLTLLGEKLFQVTWL----------QKTGFIYD 176 (346)
Q Consensus 110 L~~~~d~~LyeStGlyg~s~V~~iDl~T--gkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~----------~~~v~V~D 176 (346)
.+..-+++||+..|. ..+.+.++|+.+ .+-....+++ ....+.+++..+++||+.--. .+.+++||
T Consensus 14 ~~~~~~~~iyv~GG~-~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd 92 (357)
T 2uvk_A 14 TGAIDNDTVYIGLGS-AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYN 92 (357)
T ss_dssp EEEEETTEEEEECGG-GTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEE
T ss_pred EEEEECCEEEEEeCc-CCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEe
Confidence 333336899998775 456899999985 6655555566 444567788889999997332 46899999
Q ss_pred CCCCcEEE--EEe-cCCCceeEEeeCCCEEEEECC----------------------------------------CCeEE
Q 019103 177 QNNLNKLE--EFT-HQMKDGWGLATDGKVLFGSDG----------------------------------------SSMLY 213 (346)
Q Consensus 177 ~~tl~~i~--ti~-~~~peGwGLt~Dg~~LyvSdG----------------------------------------s~~l~ 213 (346)
+.+.+-.. ..+ .+ ..+-+.+..+++||+-=| .+.++
T Consensus 93 ~~~~~W~~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (357)
T 2uvk_A 93 PKTNSWVKLMSHAPMG-MAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL 171 (357)
T ss_dssp TTTTEEEECSCCCSSC-CSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred CCCCcEEECCCCCCcc-cccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence 98765433 333 22 345554446677888544 26899
Q ss_pred EEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEec------CCCeEEEEeC--CCCe
Q 019103 214 QIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW------QTDCIARISH--EDGV 267 (346)
Q Consensus 214 vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~------~sn~I~vID~--~TG~ 267 (346)
++|+.+.+-...-.... +...--.+...+++||+--. .++.+.+.|. ++.+
T Consensus 172 ~yd~~~~~W~~~~~~p~---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~ 230 (357)
T 2uvk_A 172 SFDPSTQQWSYAGESPW---YGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK 230 (357)
T ss_dssp EEETTTTEEEEEEECSS---CCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE
T ss_pred EEeCCCCcEEECCCCCC---CCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc
Confidence 99999987654322221 11110124456888886421 2667877765 7765
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0037 Score=65.02 Aligned_cols=192 Identities=17% Similarity=0.150 Sum_probs=123.9
Q ss_pred EEEEcCCCCCCeEEEEECCCCcEEEEecc-CC---Ce----------eEEE------------EE-----EeCCEEEEEE
Q 019103 118 LFESTGLYGRSSVRRVALETGKVEAINQM-EG---SY----------FGEG------------LT-----LLGEKLFQVT 166 (346)
Q Consensus 118 LyeStGlyg~s~V~~iDl~Tgkv~~~~~l-~~---~~----------FgeG------------it-----~~g~~LY~lt 166 (346)
.|.|.|..| +|+++-+-+++.+.++++ .+ .- .++| ++ .+|+.||+-+
T Consensus 72 ~f~SgG~sG--~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNd 149 (638)
T 3sbq_A 72 GFWSGGHQG--EVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFIND 149 (638)
T ss_dssp EEEECGGGC--CEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEE
T ss_pred EEeecCcCc--eEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEec
Confidence 677888555 999999999999999964 11 00 0111 11 3456799999
Q ss_pred eeCCEEEEEECCCCcEEEEEecC---CCceeEEe--eCCCEEEEE-C--------CC----------CeEEEEeCCCCcE
Q 019103 167 WLQKTGFIYDQNNLNKLEEFTHQ---MKDGWGLA--TDGKVLFGS-D--------GS----------SMLYQIDPQTLKV 222 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~~---~peGwGLt--~Dg~~LyvS-d--------Gs----------~~l~vIDp~T~kv 222 (346)
-.+.++.++|.++++.-+-+..+ ...|..+- |+.+++|.. . |. .....||++|+++
T Consensus 150 kan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v 229 (638)
T 3sbq_A 150 KANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM 229 (638)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE
T ss_pred CCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE
Confidence 99999999999999876655543 23343332 344444431 1 11 2345689999999
Q ss_pred EEEEEeccCCeeeeeceeeEeeCCEEEEEecCCC---------------------------------------eEEEEeC
Q 019103 223 IRKDIVRYKGREVRNLNELEFIKGEVWANVWQTD---------------------------------------CIARISH 263 (346)
Q Consensus 223 i~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn---------------------------------------~I~vID~ 263 (346)
.-.|.|..+ . .+ ..-.|.+++.|.|++++. .|-|||.
T Consensus 230 ~~Qv~v~gn--l-d~-~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~ 305 (638)
T 3sbq_A 230 AFQVIVDGN--L-DN-TDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG 305 (638)
T ss_dssp EEEEEESSC--C-CC-EEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred EEEEEcCCC--h-hh-cCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence 888888431 0 00 012333456666665542 3445555
Q ss_pred CC----C-eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeeccccccCC
Q 019103 264 ED----G-VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKDG 329 (346)
Q Consensus 264 ~T----G-~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~~~~~ 329 (346)
+. + .++..|+ ....|.|+-.+|||+.++|+||+.|++.-+.+..+..-++++
T Consensus 306 ~~~~~~~~~~~~~iP--------------~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k 362 (638)
T 3sbq_A 306 RKKDGKDSKFTRYVP--------------VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK 362 (638)
T ss_dssp SCBTTBCCSSEEEEE--------------ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC
T ss_pred ccccccCCceEEEEe--------------CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc
Confidence 44 1 2333332 234789999999999999999999999999988766655554
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.011 Score=57.77 Aligned_cols=149 Identities=9% Similarity=-0.061 Sum_probs=88.6
Q ss_pred eeEEEec---CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC----eeEEEEEEeCCEEEE-----------EEeeC
Q 019103 108 QGLLYAE---NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGS----YFGEGLTLLGEKLFQ-----------VTWLQ 169 (346)
Q Consensus 108 qGL~~~~---d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~----~FgeGit~~g~~LY~-----------ltw~~ 169 (346)
.-+.|++ |+.+++|++ .+..|++||++||+.+..+.-+.. .....+.+++..+.. .--.+
T Consensus 182 ~~l~fs~~~g~~~~LaSgS--~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D 259 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGTT--IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV 259 (356)
T ss_dssp CEEEEEEEETSTTEEEEEE--TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC
T ss_pred eeEEeeccCCCCceEEEec--CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC
Confidence 3566665 668999988 677999999999999888853321 112234444444322 22356
Q ss_pred CEEEEEECCCCcEEEEEecCCCce---eEE--eeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019103 170 KTGFIYDQNNLNKLEEFTHQMKDG---WGL--ATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~~~~peG---wGL--t~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
+++-++|+++.+.+..+.+..|+| .-+ +.++..+.....+++|.++|.++++.++++.-..+ ..+ .-+.|.
T Consensus 260 ~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~-~vv---s~vafS 335 (356)
T 2w18_A 260 FQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD-QHW---SFVKWS 335 (356)
T ss_dssp EEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC---CCC---CEEEEC
T ss_pred cEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC-CeE---EEEEEC
Confidence 788889999999888764321222 222 22344444444578999999999999988752211 111 113343
Q ss_pred -CCEEEEEecCCCeEEEEe
Q 019103 245 -KGEVWANVWQTDCIARIS 262 (346)
Q Consensus 245 -~G~LyaNv~~sn~I~vID 262 (346)
||+..|+--.+++|-+=|
T Consensus 336 PDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp SSSSEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECCCcEEEec
Confidence 555444444466666544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0051 Score=61.28 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=68.5
Q ss_pred eeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-------eEEEEEEe----
Q 019103 90 IYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-------FGEGLTLL---- 158 (346)
Q Consensus 90 ~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-------FgeGit~~---- 158 (346)
-++++++.+- -..| .||++.+||+||++.- ...+|.+++..+|+......++... =--||+++
T Consensus 16 gf~~~~~a~~--l~~P--~~~a~~pdG~l~V~e~--~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~ 89 (454)
T 1cru_A 16 NFDKKVILSN--LNKP--HALLWGPDNQIWLTER--ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFK 89 (454)
T ss_dssp TSCEEEEECC--CSSE--EEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTT
T ss_pred CeEEEEEECC--CCCc--eEEEEcCCCcEEEEEc--CCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcC
Confidence 3456666541 1345 4999999999999864 2247999998888765444443211 01267777
Q ss_pred -CCEEEEEEee------------CCEEEEEECCC--C-----cEE-EEEecC---CCceeEEeeCCCEEEEECC
Q 019103 159 -GEKLFQVTWL------------QKTGFIYDQNN--L-----NKL-EEFTHQ---MKDGWGLATDGKVLFGSDG 208 (346)
Q Consensus 159 -g~~LY~ltw~------------~~~v~V~D~~t--l-----~~i-~ti~~~---~peGwGLt~Dg~~LyvSdG 208 (346)
++.||++.-. .+.|+.++.+. . +++ ..++.. .+.+..+.+|| +||++.|
T Consensus 90 ~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G 162 (454)
T 1cru_A 90 NNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG 162 (454)
T ss_dssp TSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred cCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence 7899999753 35787776532 1 122 224322 23445567788 5999854
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.01 Score=55.26 Aligned_cols=143 Identities=14% Similarity=-0.081 Sum_probs=84.9
Q ss_pred CeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEe------eCCEEEEEEC--CCC--cEEEEEecCC-CceeE
Q 019103 128 SSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTW------LQKTGFIYDQ--NNL--NKLEEFTHQM-KDGWG 195 (346)
Q Consensus 128 s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw------~~~~v~V~D~--~tl--~~i~ti~~~~-peGwG 195 (346)
+.+.+||+.+++-...-+++. ...+.+++..+++||+.-- ..+.+++||. ++. +.+...+.+. ..+-.
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 689999999998666666653 3344778889999999832 3567888875 443 3333443321 23434
Q ss_pred EeeCCCEEEEECCC-----------------------CeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEe
Q 019103 196 LATDGKVLFGSDGS-----------------------SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANV 252 (346)
Q Consensus 196 Lt~Dg~~LyvSdGs-----------------------~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv 252 (346)
++.-++.||+--|. +.+.++|+++.+-... +....+...- .....+++||+-=
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~-~~~~~~~~i~v~G 323 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS---GELSQGRAYG-VSLPWNNSLLIIG 323 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE---EECSSCCBSS-EEEEETTEEEEEE
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC---CCCCCCcccc-eeEEeCCEEEEEe
Confidence 55556678886551 3688999998776532 2211122111 1345688888622
Q ss_pred c---C---CCeEEEEeCCCCeEEEEEEC
Q 019103 253 W---Q---TDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 253 ~---~---sn~I~vID~~TG~Vv~~I~l 274 (346)
- . .++|.++|.++++++....+
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 1 1 36799999999998877644
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.038 Score=57.65 Aligned_cols=204 Identities=11% Similarity=0.010 Sum_probs=118.9
Q ss_pred eeEEEec-CCEEEEEcCCCCC----CeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCC--EEEEEECCC
Q 019103 108 QGLLYAE-NDTLFESTGLYGR----SSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQK--TGFIYDQNN 179 (346)
Q Consensus 108 qGL~~~~-d~~LyeStGlyg~----s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~--~v~V~D~~t 179 (346)
.+.+... +++||+-.|..+. +.+.+||+.+++-...-+++..-++.+.+.. +++||+.-..+. .+++||+.+
T Consensus 443 hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 443 HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTT
T ss_pred eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCC
Confidence 4566654 6899998875442 5799999999987666667666667777885 899999843322 799999988
Q ss_pred CcEEEE-----EecCCCceeE-E--eeCCCEEEEECC--------CCeEEEEeCCCCcE-----EEEEEeccCCeeeeec
Q 019103 180 LNKLEE-----FTHQMKDGWG-L--ATDGKVLFGSDG--------SSMLYQIDPQTLKV-----IRKDIVRYKGREVRNL 238 (346)
Q Consensus 180 l~~i~t-----i~~~~peGwG-L--t~Dg~~LyvSdG--------s~~l~vIDp~T~kv-----i~~I~V~~~G~pv~~l 238 (346)
.+-..- .+.+ ..+-+ + ..+.++||+.-| .+.++.+|+.+.+- -..+.-.. ..+....
T Consensus 523 ~~W~~~~~~g~~p~~-r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~ 600 (695)
T 2zwa_A 523 EIFKDVTPKDEFFQN-SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGS 600 (695)
T ss_dssp TEEEECCCSSGGGGS-CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSC
T ss_pred CceEEccCCCCCCCc-ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccc
Confidence 654432 2222 12222 3 333478888654 36799999999871 12222110 0111111
Q ss_pred eeeEeeC-CEEEEEec--------CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 239 NELEFIK-GEVWANVW--------QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 239 NELE~~~-G~LyaNv~--------~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
.+...+ |+||+-=. ..+.|.+.|+++++-. .+++ .........| ..+-.+.+..+++ ++||.|.
T Consensus 601 -~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~---p~~~~~~~~p-~~~gh~~~~~~~g-~i~v~GG 673 (695)
T 2zwa_A 601 -QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPI---SRRIWEDHSL-MLAGFSLVSTSMG-TIHIIGG 673 (695)
T ss_dssp -EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCC---CHHHHHHSCC-CCSSCEEECC----CEEEECC
T ss_pred -eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE-Eeec---cccccCCCCc-cceeeeEEEeCCC-EEEEEeC
Confidence 133445 88887322 3678999999999765 3332 2111000001 1111233333333 6777776
Q ss_pred C---------CCcEEEEEEe
Q 019103 310 L---------WPKLYEINLR 320 (346)
Q Consensus 310 ~---------Wp~l~ev~l~ 320 (346)
. |+.+|.++|.
T Consensus 674 g~~cfsfGt~~n~i~~ldl~ 693 (695)
T 2zwa_A 674 GATCYGFGSVTNVGLKLIAI 693 (695)
T ss_dssp EEECTTSCEEECCCEEEEEC
T ss_pred CccCcCccccccceEEEEEE
Confidence 2 7788888774
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.038 Score=54.47 Aligned_cols=154 Identities=13% Similarity=0.085 Sum_probs=102.0
Q ss_pred EEEEEEecC-----CCCcceeEEEe-c-------CCEEEEEcCCCCCCeEEEEECCCCcEEEEec---cC----------
Q 019103 94 QVVNEFPHD-----PRAFTQGLLYA-E-------NDTLFESTGLYGRSSVRRVALETGKVEAINQ---ME---------- 147 (346)
Q Consensus 94 ~Vv~t~phd-----~~~FTqGL~~~-~-------d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~---l~---------- 147 (346)
+++++|+.. +..|.+.|.++ . ++..|++.- +...|.+||+++|+.-+... .+
T Consensus 136 ~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~--~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G 213 (381)
T 3q6k_A 136 PEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNF--LRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGG 213 (381)
T ss_dssp CEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEET--TTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETT
T ss_pred eeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcC--CCCcEEEEECCCCcEEEEccCCCccccCcceEECC
Confidence 899999764 34567889998 2 347999975 66799999999998654441 11
Q ss_pred ------CCeeEEEEEEe----CCEEEEEEeeCCEEEEEECCCCc---EEEEEec----C-CCceeEEeeC--CCEEEEEC
Q 019103 148 ------GSYFGEGLTLL----GEKLFQVTWLQKTGFIYDQNNLN---KLEEFTH----Q-MKDGWGLATD--GKVLFGSD 207 (346)
Q Consensus 148 ------~~~FgeGit~~----g~~LY~ltw~~~~v~V~D~~tl~---~i~ti~~----~-~peGwGLt~D--g~~LyvSd 207 (346)
.+.||..++.+ ++.||-..--+.+.|.+.++-|+ ....|.. + ..+|.+++.| .+.||.++
T Consensus 214 ~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~ 293 (381)
T 3q6k_A 214 KEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAE 293 (381)
T ss_dssp EEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEE
T ss_pred EEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEe
Confidence 24566666655 67899988889999999854222 1222221 1 2477777665 57899999
Q ss_pred -CCCeEEEEeCCC--C--cEEEEEEeccCCeeeeeceeeEee-CCEEEEEe
Q 019103 208 -GSSMLYQIDPQT--L--KVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (346)
Q Consensus 208 -Gs~~l~vIDp~T--~--kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv 252 (346)
+.+.|..+|+.+ + +-...+ +.+. .+...+.+-.. +|+||+..
T Consensus 294 ~~~~aI~~w~~~~~~~~~~n~~~l-~~d~--~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 294 ANTKQVSCWNTQKMPLRMKNTDVV-YTSS--RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp SSSSEEEEEETTSCSBCGGGEEEE-EECT--TCCSEEEEEECTTSCEEEEE
T ss_pred ccCCeEEEEeCCCCccccCceEEE-EECC--CccccCeEEECCCCeEEEEE
Confidence 789999999986 2 122222 2232 33455566554 67898765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.008 Score=61.67 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=111.9
Q ss_pred eeEEEecCCEEEEEcCCCC----CCeEEEEECCCCcEEEE-----eccCCCeeEEEEEEeCCEEEEEEeeC---------
Q 019103 108 QGLLYAENDTLFESTGLYG----RSSVRRVALETGKVEAI-----NQMEGSYFGEGLTLLGEKLFQVTWLQ--------- 169 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg----~s~V~~iDl~Tgkv~~~-----~~l~~~~FgeGit~~g~~LY~ltw~~--------- 169 (346)
.+.++.+||++|+..|.+. .+.+.+||+.+++-... .++..... .++...++++|+.-+.+
T Consensus 290 ~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~ 368 (656)
T 1k3i_A 290 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPS 368 (656)
T ss_dssp CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSS
T ss_pred cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc-cceeecCCceEEEECCCCcEEEecCc
Confidence 4667767899999988432 26799999999986553 23322211 13344566777776543
Q ss_pred CEEEEEECCCCcEEEEEecC---------CCceeEEe--eCCCEEEEECC---------CC---eEEEEeCCCCcEEEEE
Q 019103 170 KTGFIYDQNNLNKLEEFTHQ---------MKDGWGLA--TDGKVLFGSDG---------SS---MLYQIDPQTLKVIRKD 226 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~~~---------~peGwGLt--~Dg~~LyvSdG---------s~---~l~vIDp~T~kvi~~I 226 (346)
+.+..||+++.+........ ...|.++. .-+++||+.=| .+ .|.+.|+++.+-....
T Consensus 369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 448 (656)
T 1k3i_A 369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA 448 (656)
T ss_dssp SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC
T ss_pred cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc
Confidence 46778998877644433221 12455654 33667887644 12 7889999988764322
Q ss_pred EeccCCeeeeeceeeEeeCCEEEEEecC-----------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEE
Q 019103 227 IVRYKGREVRNLNELEFIKGEVWANVWQ-----------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGI 295 (346)
Q Consensus 227 ~V~~~G~pv~~lNELE~~~G~LyaNv~~-----------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGI 295 (346)
......+..........||+||+--.. .+++.+.||++++- -.+..+.. ...-.+.
T Consensus 449 -~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W---~~~~~~~~---------~R~~hs~ 515 (656)
T 1k3i_A 449 -SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF---YKQNPNSI---------VRVYHSI 515 (656)
T ss_dssp -TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE---EECCCCSS---------CCCTTEE
T ss_pred -cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce---eecCCCCC---------ccccccH
Confidence 112112221111122338899976532 36789999999863 33322210 0112334
Q ss_pred E-EeCCCCEEEEecCC-----CCcEEEEEE
Q 019103 296 A-WDSNRNRIFVTGKL-----WPKLYEINL 319 (346)
Q Consensus 296 A-~d~~~~~LfVTGK~-----Wp~l~ev~l 319 (346)
| +.+++ ++||.|.+ ....|.+++
T Consensus 516 a~ll~dg-~v~v~GG~~~~~~~~~~~~~e~ 544 (656)
T 1k3i_A 516 SLLLPDG-RVFNGGGGLCGDCTTNHFDAQI 544 (656)
T ss_dssp EEECTTS-CEEEEECCCCTTCSCCCCEEEE
T ss_pred hhcCCCc-EEEecCCCCCCCCCCCeeEEEE
Confidence 4 44554 57777765 355677776
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.03 Score=51.12 Aligned_cols=191 Identities=10% Similarity=0.017 Sum_probs=104.9
Q ss_pred EEEEEe-cCCCCcceeEEEec--CCEEEEEcCCCCCCeEEEEECCCCcE--EEEecc-CCCeeEEEEEEeC---CEEEEE
Q 019103 95 VVNEFP-HDPRAFTQGLLYAE--NDTLFESTGLYGRSSVRRVALETGKV--EAINQM-EGSYFGEGLTLLG---EKLFQV 165 (346)
Q Consensus 95 Vv~t~p-hd~~~FTqGL~~~~--d~~LyeStGlyg~s~V~~iDl~Tgkv--~~~~~l-~~~~FgeGit~~g---~~LY~l 165 (346)
.+.++. |. .....+.|++ ++.++.|++ .+..|++||+.+++. ...+.- .... ..++... +.++++
T Consensus 49 ~~~~l~gH~--~~V~~v~~~~~~~~~~l~s~s--~D~~v~iWd~~~~~~~~~~~~~~h~~~V--~~v~~~p~~~g~~las 122 (316)
T 3bg1_A 49 LIADLRGHE--GPVWQVAWAHPMYGNILASCS--YDRKVIIWREENGTWEKSHEHAGHDSSV--NSVCWAPHDYGLILAC 122 (316)
T ss_dssp EEEEEECCS--SCEEEEEECCGGGSSCEEEEE--TTSCEEEECCSSSCCCEEEEECCCSSCC--CEEEECCTTTCSCEEE
T ss_pred EEEEEcCCC--ccEEEEEeCCCCCCCEEEEEE--CCCEEEEEECCCCcceEEEEccCCCCce--EEEEECCCCCCcEEEE
Confidence 344554 42 3346899974 367777777 456999999999853 332221 1222 3344432 345555
Q ss_pred EeeCCEEEEEECCCCcEE---EEEec-C-CCceeEEeeC-----------------CCEEEEECCCCeEEEEeCCCCc--
Q 019103 166 TWLQKTGFIYDQNNLNKL---EEFTH-Q-MKDGWGLATD-----------------GKVLFGSDGSSMLYQIDPQTLK-- 221 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~~i---~ti~~-~-~peGwGLt~D-----------------g~~LyvSdGs~~l~vIDp~T~k-- 221 (346)
.-.++.+.++|..+.... ..+.. . .-....++++ ++.|.....+++|.++|.++..
T Consensus 123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~ 202 (316)
T 3bg1_A 123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202 (316)
T ss_dssp ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE
T ss_pred EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc
Confidence 666889999998765322 22111 0 0122234444 2444444457789999976542
Q ss_pred -EEEEEEeccCCeeeeeceeeEee-C----CEEEEEecCCCeEEEEeCCCCe---EE-EEEECCchhhhhhhccCCCCce
Q 019103 222 -VIRKDIVRYKGREVRNLNELEFI-K----GEVWANVWQTDCIARISHEDGV---VL-GWVLLPNLRERLVAAGYNGIDV 291 (346)
Q Consensus 222 -vi~~I~V~~~G~pv~~lNELE~~-~----G~LyaNv~~sn~I~vID~~TG~---Vv-~~I~l~~l~~~~~~~~~~~~~v 291 (346)
.+.++. .+..+ ++.+.+. + +.++|..-.+.+|.+-|.+++. .. ..+. . -...
T Consensus 203 ~~~~~l~--~h~~~---V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~---------~----~~~~ 264 (316)
T 3bg1_A 203 KEEQKLE--AHSDW---VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH---------K----FNDV 264 (316)
T ss_dssp EEEECCB--CCSSC---EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE---------E----CSSC
T ss_pred ceeeecc--cCCCc---eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh---------c----CCCc
Confidence 222221 12122 3345543 2 2566777678889888887631 00 0110 0 0134
Q ss_pred eeEEEEeCCCCEEEEecC
Q 019103 292 LNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 292 lNGIA~d~~~~~LfVTGK 309 (346)
.+.+||+|+++.|..++.
T Consensus 265 v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 265 VWHVSWSITANILAVSGG 282 (316)
T ss_dssp EEEEEECTTTCCEEEEES
T ss_pred EEEEEEcCCCCEEEEEcC
Confidence 678999999987766653
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.074 Score=55.03 Aligned_cols=193 Identities=12% Similarity=0.098 Sum_probs=109.4
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCc
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
......|..+.+|.||++|. +.|.+||-.+-+..... .+... .-..+..+ .+.||+.| .+-++.||..+.+
T Consensus 21 ~n~V~~I~qD~~G~lWigT~----~GL~ryDG~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWigT--~~Gl~~yd~~~~~ 93 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSN----KGLFSYDGYSTQQHFTYGENNNT-RIYCGVIIDNTYLYMGT--DNGILVYNYRADR 93 (758)
T ss_dssp CCCEEEEEECTTSCEEEEES----SCEEEECSSCEEECSCTTSTTSS-CEEEEEEETTTEEEEEE--TTEEEEEETTTTE
T ss_pred cceEEEEEECCCCCEEEEEC----CCccccCCCceEEEEccCCCCCc-eEEEEEEcCCCcEEEEe--CCCeEEEeCCCCE
Confidence 44557788888899999985 26888885432211111 12222 22334443 57999999 3568999998865
Q ss_pred EEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEE
Q 019103 182 KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIAR 260 (346)
Q Consensus 182 ~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~v 260 (346)
...........=+.+..+.+.||+.... -|+.+|+++.+... +.-...+.+-..+..+..+ +|.||+... +-|.+
T Consensus 94 f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWigt~--~Gl~~ 169 (758)
T 3ott_A 94 YEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQIYVGTY--NGLCR 169 (758)
T ss_dssp ECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCCEEEEET--TEEEE
T ss_pred EECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCCEEEEeC--CCHhh
Confidence 4321000001122344455688885433 79999998876542 2111112222223334333 789998764 57999
Q ss_pred EeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 261 ISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 261 ID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
+|+++++.. .+..+.-. .......+.|+.|.+++.|||.-. .-|+..
T Consensus 170 ~~~~~~~~~-~~~~~~~~-------~~~~~~i~~i~~d~~~~~lWigt~--~Gl~~~ 216 (758)
T 3ott_A 170 YIPSNGKFE-GIPLPVHS-------SQSNLFVNSLLEDTTRQCVWIGTE--GYLFQY 216 (758)
T ss_dssp EETTTTEEE-EECCCCCT-------TCSSCCEEEEEEETTTTEEEEEEE--EEEEEE
T ss_pred CccCCCceE-EecCCCcc-------ccccceeEEEEEECCCCEEEEEEC--CCCeEE
Confidence 999999864 33331100 011224567888888888888542 345544
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0066 Score=63.08 Aligned_cols=107 Identities=9% Similarity=0.113 Sum_probs=72.5
Q ss_pred CCceeEEeeCCCEEEEE--CCC--------------------CeEEEEeCC-------CCcEEEEEEecc----------
Q 019103 190 MKDGWGLATDGKVLFGS--DGS--------------------SMLYQIDPQ-------TLKVIRKDIVRY---------- 230 (346)
Q Consensus 190 ~peGwGLt~Dg~~LyvS--dGs--------------------~~l~vIDp~-------T~kvi~~I~V~~---------- 230 (346)
.||+..+.|..+.+|++ |.+ ..|+-+++. +|+..--+..++
T Consensus 385 RpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~~ 464 (592)
T 4a9v_A 385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG 464 (592)
T ss_dssp CEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred CccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccccc
Confidence 58999999988888884 421 457777642 222211122121
Q ss_pred ------CCeeeeeceeeEee-CCEEEE-EecC-----------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCce
Q 019103 231 ------KGREVRNLNELEFI-KGEVWA-NVWQ-----------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDV 291 (346)
Q Consensus 231 ------~G~pv~~lNELE~~-~G~Lya-Nv~~-----------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~v 291 (346)
.++++..+|.|.+. +|.||. +.-. .+.|.++||.+|++..-+.. |...-
T Consensus 465 g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~------------P~~aE 532 (592)
T 4a9v_A 465 GSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG------------PIGCE 532 (592)
T ss_dssp CCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC------------CTTCE
T ss_pred CccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC------------CCCcc
Confidence 12356777888877 589998 5531 34799999999998666533 23446
Q ss_pred eeEEEEeCCCCEEEEec
Q 019103 292 LNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 292 lNGIA~d~~~~~LfVTG 308 (346)
+|||+|+||+++|||+=
T Consensus 533 pnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 533 VTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTSSEEEEEE
T ss_pred ccCCEECCCCCEEEEEE
Confidence 89999999999999974
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.06 Score=50.90 Aligned_cols=204 Identities=9% Similarity=-0.013 Sum_probs=103.0
Q ss_pred cCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc---CC-CeeEEEEEEe---------CCEEEEEEeeCCEEEEEECCCC
Q 019103 114 ENDTLFESTGLYGRSSVRRVALETGKVEAINQM---EG-SYFGEGLTLL---------GEKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 114 ~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l---~~-~~FgeGit~~---------g~~LY~ltw~~~~v~V~D~~tl 180 (346)
+++.++.+.+ .+.+|+.||.++++......+ .. ..+-..++.. .+++.+..-.++++.+.|..+.
T Consensus 99 ~~~~~las~~--~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 99 VYSLFLACVC--QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp EEEEEEEEEE--TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred CCCCEEEEEe--CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 3345666666 667999999999987654432 21 2223334442 3567777778999999998877
Q ss_pred cEEEEE-ecCC-CceeEEeeCCCE-EEEECCCCeEEEEeCCCCcEEEEEEeccCC----------e----------eeee
Q 019103 181 NKLEEF-THQM-KDGWGLATDGKV-LFGSDGSSMLYQIDPQTLKVIRKDIVRYKG----------R----------EVRN 237 (346)
Q Consensus 181 ~~i~ti-~~~~-peGwGLt~Dg~~-LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G----------~----------pv~~ 237 (346)
+.+.++ .+.. .....++|++.. |.+...+++|.++|..+.+...+..-...+ . ....
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 665554 4431 233345678765 555567889999999988765443221100 0 0001
Q ss_pred ceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhh----hh-ccCCCCceeeEEEEeC-CCCEEEEecC
Q 019103 238 LNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERL----VA-AGYNGIDVLNGIAWDS-NRNRIFVTGK 309 (346)
Q Consensus 238 lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~----~~-~~~~~~~vlNGIA~d~-~~~~LfVTGK 309 (346)
+..+.+. +|+..+..-.++.|.+-|..+++....+......... +. .+........+..+.+ ..+.+.++|-
T Consensus 257 v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs 336 (393)
T 4gq1_A 257 LANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS 336 (393)
T ss_dssp CSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET
T ss_pred ceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC
Confidence 1223332 5655555556888999999998876655321110000 00 0001112223344444 4455667777
Q ss_pred CCCcEEEEEE
Q 019103 310 LWPKLYEINL 319 (346)
Q Consensus 310 ~Wp~l~ev~l 319 (346)
...+|+-..+
T Consensus 337 ~Dg~V~lwd~ 346 (393)
T 4gq1_A 337 QHGLIQLINT 346 (393)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEEEC
Confidence 7777665544
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.012 Score=59.39 Aligned_cols=117 Identities=12% Similarity=0.100 Sum_probs=78.8
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcE-EEEeccCCCeeEEEE--EEeC-C-EEEEEEeeCCEEEEEECCCCc
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKV-EAINQMEGSYFGEGL--TLLG-E-KLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv-~~~~~l~~~~FgeGi--t~~g-~-~LY~ltw~~~~v~V~D~~tl~ 181 (346)
...+.|++++.|. +++ .+..|+.||+.+++. .........+ -..+ .... + .++++.-.++.+.++|..+.+
T Consensus 269 v~sv~~s~~~~la-sgs--~DgtV~lWD~~~~~~~~~~~~~H~~~-V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 269 ITTFDFLSPTTVV-CGF--KNGFVAEFDLTDPEVPSFYDQVHDSY-ILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp EEEEEESSSSEEE-EEE--TTSEEEEEETTBCSSCSEEEECSSSC-EEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred EEEEEecCCCeEE-EEe--CCCEEEEEECCCCCCceEEeeccccc-EEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 4688998766554 434 456999999998742 2222222221 2334 2222 3 677777789999999999887
Q ss_pred EEEEEecCCC----ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEE
Q 019103 182 KLEEFTHQMK----DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDI 227 (346)
Q Consensus 182 ~i~ti~~~~p----eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~ 227 (346)
.+.++....+ ....++||++.+..+.++++|.++|..+++.+.++.
T Consensus 345 ~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~ 394 (524)
T 2j04_B 345 TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV 394 (524)
T ss_dssp HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee
Confidence 7666542111 346788999998878888899999999988765554
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.41 Score=49.42 Aligned_cols=185 Identities=12% Similarity=0.084 Sum_probs=108.0
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
.....|..+.+|.||++|. ..|.++|..+++........... -..+...++.||++|.. -++.||.++.+. .
T Consensus 63 ~~i~~i~~d~~g~lWigT~----~Gl~~yd~~~~~f~~~~~~~~~~-i~~i~~~~g~lWigt~~--Gl~~~~~~~~~~-~ 134 (758)
T 3ott_A 63 TRIYCGVIIDNTYLYMGTD----NGILVYNYRADRYEQPETDFPTD-VRTMALQGDTLWLGALN--GLYTYQLQSRKL-T 134 (758)
T ss_dssp SCEEEEEEETTTEEEEEET----TEEEEEETTTTEECCCSCCCCSC-EEEEEEETTEEEEEETT--EEEEEETTTCCE-E
T ss_pred ceEEEEEEcCCCcEEEEeC----CCeEEEeCCCCEEECcccCCCce-EEEEEecCCcEEEEcCC--cceeEeCCCCeE-E
Confidence 3456777788889999985 37999999998764411111111 12344567899999853 789999887654 3
Q ss_pred EEec---CC--CceeEEeeC-CCEEEEECCCCeEEEEeCCCCcEEEEEEeccC-CeeeeeceeeEee-C-CEEEEEecCC
Q 019103 185 EFTH---QM--KDGWGLATD-GKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK-GREVRNLNELEFI-K-GEVWANVWQT 255 (346)
Q Consensus 185 ti~~---~~--peGwGLt~D-g~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~-G~pv~~lNELE~~-~-G~LyaNv~~s 255 (346)
.+.. +. ..=+.+..| .+.||+.-. +-|+.+|+.+.+.. .+..... +.+-..++.+..+ + +.||+...
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEEEET-TEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE--
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEEEeC-CCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC--
Confidence 3421 11 122456565 567887432 46999999887643 2222111 1111123344333 3 47998764
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
+-+.++|++++++...-.+ . .+....|+.|.++ .|||.-. .-|+.+
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l---~----------~~~i~~i~~d~~g-~lWigT~--~Gl~~~ 256 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAF---H----------NNSIKSLALDGNG-DLLAGTD--NGLYVY 256 (758)
T ss_dssp EEEEEEETTTTEEEEEEEE---E----------EEEEEEEEECTTC-CEEEEET--TEEEEE
T ss_pred CCCeEEcCCCCeEEeccCC---C----------CCeEEEEEEcCCC-CEEEEeC--CceeEE
Confidence 4699999999987543211 1 1245677777654 4666532 345554
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.22 Score=48.82 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=110.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCc---------E--EEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGK---------V--EAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgk---------v--~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D 176 (346)
.-|++++...|+.++| + +.+.++++++.+ . ...++++. ....++ +++.|+++ .++.+.+||
T Consensus 41 nlLais~~~gll~a~~--~-~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~--~~~~l~v~d 112 (388)
T 1xip_A 41 QNLDISNSKSLFVAAS--G-SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS--TRNALYSLD 112 (388)
T ss_dssp BCEEEETTTTEEEEEE--T-TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE--ESSEEEEEE
T ss_pred cEEEEcCCCCEEEEeC--C-CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE--cCCcEEEEE
Confidence 6789988776666655 2 488889876543 1 13446776 666555 88999998 779999999
Q ss_pred CCCCcEEEEEec-CCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCC
Q 019103 177 QNNLNKLEEFTH-QMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQT 255 (346)
Q Consensus 177 ~~tl~~i~ti~~-~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~s 255 (346)
..++....+++. ..+ =-.+-+-...+.+...++.|+++|.++.+... +.. ...-+.|-..-+.+. ...
T Consensus 113 v~sl~~~~~~~~~~~~-v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~---~~~------~Vs~v~WSpkG~~vg-~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKP-VFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ---LAQ------NVTSFDVTNSQLAVL-LKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSC-EEEEEECSSEEEEEETTSEEEEEETTTCCEEE---EEE------SEEEEEECSSEEEEE-ETT
T ss_pred chhhhccCccceeecc-eeeEEecCCCEEEEECCCCEEEEEccCCcccc---ccC------CceEEEEcCCceEEE-EcC
Confidence 998887665543 211 01222223236666678899999998877643 211 112355553324333 357
Q ss_pred CeEEEEeCCCCeE--EEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEE
Q 019103 256 DCIARISHEDGVV--LGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 256 n~I~vID~~TG~V--v~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfV 306 (346)
+.|...+++++++ .++|+.+ +.+.+. .......-.|.|.+++..|.+
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~P---p~~~~~-~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLP---SELEEL-PVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCC---HHHHTS-CTTTSEEEEEEESSSSEEEEE
T ss_pred CcEEEEcCCCccccccceecCC---cccccc-cCCCeeEEEEEEecCCeEEEE
Confidence 8899999999998 7888553 333210 111245667888876554443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.044 Score=57.39 Aligned_cols=153 Identities=10% Similarity=-0.050 Sum_probs=83.5
Q ss_pred eeEEEe-cCCE--EEEEcCCCCC--CeEEEEECCCC-cEEEEeccCCCeeEEEEEEeCCEEEEEEeeC----CEEEEEEC
Q 019103 108 QGLLYA-ENDT--LFESTGLYGR--SSVRRVALETG-KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ----KTGFIYDQ 177 (346)
Q Consensus 108 qGL~~~-~d~~--LyeStGlyg~--s~V~~iDl~Tg-kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~----~~v~V~D~ 177 (346)
.+..++ |||+ +|... ..|+ .+|.++|+++| +.+.. .++....+-..+.+|+.||...... .++++.+.
T Consensus 177 ~~~~~S~PDG~~lAy~~~-~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVD-MSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEECTTTTCEEEEEEE-SSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred eeeEecCCCCCEEEEEEe-CCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 457889 9994 34332 2243 46999999999 73211 1111111222345677777665432 47999998
Q ss_pred CCCcEE--EEEecC---CCceeEEeeCCCEEEE-EC--CCCeEEEEeCCCCcE-E--EEEEeccCCeeeeeceeeEee-C
Q 019103 178 NNLNKL--EEFTHQ---MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKV-I--RKDIVRYKGREVRNLNELEFI-K 245 (346)
Q Consensus 178 ~tl~~i--~ti~~~---~peGwGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kv-i--~~I~V~~~G~pv~~lNELE~~-~ 245 (346)
.+.+.. ..+... .-.+..+++||++|++ +. +.+.|+++|+++.+. . ..+ +.....+.. ..++. +
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-~~~~~~~~~---s~~~~~g 330 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV-RPREKGVRY---DVQMHGT 330 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES-SCCCTTCCE---EEEEETT
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe-ecCCCCceE---EEeeeeC
Confidence 876422 122211 1123357899998876 32 477999999987521 1 111 111111211 12212 5
Q ss_pred CEEE-EEecC---CCeEEEEeCCCC
Q 019103 246 GEVW-ANVWQ---TDCIARISHEDG 266 (346)
Q Consensus 246 G~Ly-aNv~~---sn~I~vID~~TG 266 (346)
+++| .++.. ...|.++|.+++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~ 355 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQP 355 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTST
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCc
Confidence 5665 45542 347999998863
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.058 Score=56.31 Aligned_cols=158 Identities=9% Similarity=0.047 Sum_probs=99.8
Q ss_pred eEEEecCCEEEEEcCCC--CCCeEEEEECCCCcEEEEe-c-----cCCCeeEEEEEEe--CCEEEEEEee------CCEE
Q 019103 109 GLLYAENDTLFESTGLY--GRSSVRRVALETGKVEAIN-Q-----MEGSYFGEGLTLL--GEKLFQVTWL------QKTG 172 (346)
Q Consensus 109 GL~~~~d~~LyeStGly--g~s~V~~iDl~Tgkv~~~~-~-----l~~~~FgeGit~~--g~~LY~ltw~------~~~v 172 (346)
|-...-++.||+-.|.. ..+.+.+||+.+++-.... + ++..-.+.+++.. +++||+.--. -+.+
T Consensus 391 g~~~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv 470 (695)
T 2zwa_A 391 GDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDN 470 (695)
T ss_dssp CEEEECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCC
T ss_pred eEEEEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccE
Confidence 54444467899887742 2457999999999865554 3 4544556778888 9999998422 3679
Q ss_pred EEEECCC--CcEEEEEecCCCceeEEee-CCCEEEEECC---CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--
Q 019103 173 FIYDQNN--LNKLEEFTHQMKDGWGLAT-DGKVLFGSDG---SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-- 244 (346)
Q Consensus 173 ~V~D~~t--l~~i~ti~~~~peGwGLt~-Dg~~LyvSdG---s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-- 244 (346)
++||+.+ ++.+...+.+ ..+.+.+. .++.||+.=| ...++++|+++.+-...-..+....+......+.+.
T Consensus 471 ~~yd~~t~~W~~~~~~p~~-R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 471 WIFDMKTREWSMIKSLSHT-RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EEEETTTTEEEECCCCSBC-CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EEEeCCCCcEEECCCCCCC-cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 9999988 4555555544 35556655 4777888644 228999999998764322211111122111112222
Q ss_pred CCEEEEEecC-------CCeEEEEeCCCCe
Q 019103 245 KGEVWANVWQ-------TDCIARISHEDGV 267 (346)
Q Consensus 245 ~G~LyaNv~~-------sn~I~vID~~TG~ 267 (346)
+++||+--.. .+++.+.|+++.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 2788874322 4789999999998
|
| >3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.46 Score=46.43 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=82.3
Q ss_pred EEEEEEeeCC--EEEEEECCCCcEEEEEecC--CCceeE-----E-eeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEec
Q 019103 161 KLFQVTWLQK--TGFIYDQNNLNKLEEFTHQ--MKDGWG-----L-ATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 161 ~LY~ltw~~~--~v~V~D~~tl~~i~ti~~~--~peGwG-----L-t~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~ 229 (346)
.||-.+-+.+ .+-+||.++++++++++.+ .|.|.+ + ..+.+.+|+++ ....|+.+|.+ +++++++...
T Consensus 41 yL~~~N~~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~~~~i~l~n~~-G~~~~k~~~~ 119 (369)
T 3s9j_A 41 YLHFENTQKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNISRLSSINSQ-GEIIRNYNFQ 119 (369)
T ss_dssp EEEEEECSTTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGGGTEEEEECTT-CCEEEEEECC
T ss_pred EEEEeCCCCCcCcEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCCEEEEEeCCcceEEEECCC-ceEEEEEecC
Confidence 5777888888 9999999999999999974 566644 3 34677888876 78899999975 7999999887
Q ss_pred cCCeeeee------cee-eEeeCCEEEEEec------------CCCeEEEEeCCCCeEEEEEEC--Cchh
Q 019103 230 YKGREVRN------LNE-LEFIKGEVWANVW------------QTDCIARISHEDGVVLGWVLL--PNLR 278 (346)
Q Consensus 230 ~~G~pv~~------lNE-LE~~~G~LyaNv~------------~sn~I~vID~~TG~Vv~~I~l--~~l~ 278 (346)
..+..+.. -|. +-..++.+|++.- ....++.||+.++++ .++++ +++.
T Consensus 120 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~a~~dl~~~~~-~~l~l~yP~~~ 188 (369)
T 3s9j_A 120 TPEGRFTPLSFGSYYNAPAFIKDSCIFLRQEILKPDMKKEDWPRTHMFASQDLRTGEV-KWIPIFYPPIF 188 (369)
T ss_dssp CTTSCCCCCCCBTTTTBCCEEETTEEEEECCCSSSSCCGGGGGGSEEEEEEETTTCCE-EEEEEECCSCC
T ss_pred CCccccccccccccccCcceecCceEEEeccccccccchhhhccCceEEEEECCCCcE-EEeeccCCccc
Confidence 65432210 011 2223567887422 234799999999997 56665 5543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.096 Score=52.49 Aligned_cols=109 Identities=12% Similarity=0.048 Sum_probs=59.6
Q ss_pred EEEEE--eCC-EEEEEEeeCCEEEEEECCCC---cEEEEEec----------C-CCceeEEeeC---CCEEEEEC---CC
Q 019103 153 EGLTL--LGE-KLFQVTWLQKTGFIYDQNNL---NKLEEFTH----------Q-MKDGWGLATD---GKVLFGSD---GS 209 (346)
Q Consensus 153 eGit~--~g~-~LY~ltw~~~~v~V~D~~tl---~~i~ti~~----------~-~peGwGLt~D---g~~LyvSd---Gs 209 (346)
.+|+. ++. +||++. +.++|+++|.+.. +.+..++. + ..-|+++.|| ..+||++. ..
T Consensus 17 ~~~a~~pdG~~rl~V~e-r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 17 VGALHSGDGSQRLFILE-KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEECCSSSSCCEEEEE-TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred eEEEECCCCCeEEEEEe-CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 34554 453 688865 6789999986532 12333321 1 1233556665 56888853 11
Q ss_pred ----------CeEEEEeC----------CCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCC-------------
Q 019103 210 ----------SMLYQIDP----------QTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQT------------- 255 (346)
Q Consensus 210 ----------~~l~vIDp----------~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s------------- 255 (346)
+.|.-+.. .+.+++-++.... ..++-..|.+. ||+||+++-..
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~---~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~ 172 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH---RKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGL 172 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS---SSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTC
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC---CcccCCcEeECCCCcEEEEeCCCCCCCCccccccCc
Confidence 24543332 2234444444322 22344556665 78999987542
Q ss_pred ----CeEEEEeCCC
Q 019103 256 ----DCIARISHED 265 (346)
Q Consensus 256 ----n~I~vID~~T 265 (346)
..|++||++.
T Consensus 173 ~~~~GkIlRi~~dg 186 (463)
T 2wg3_C 173 SDFTGSVLRLDVDT 186 (463)
T ss_dssp CSCTTEEEEEBCCC
T ss_pred CCCCeeEEEEECCC
Confidence 3488888875
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.052 Score=52.52 Aligned_cols=115 Identities=8% Similarity=0.011 Sum_probs=75.9
Q ss_pred CCEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEe----eCCCEEEEEC--CCCeEEEEeCCCCcEEEEEEecc-
Q 019103 159 GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLA----TDGKVLFGSD--GSSMLYQIDPQTLKVIRKDIVRY- 230 (346)
Q Consensus 159 g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt----~Dg~~LyvSd--Gs~~l~vIDp~T~kvi~~I~V~~- 230 (346)
++.+|+.+. ++.++.+|++|++++-+++.. ...-.+.. ++++.+|+-+ ++.+|+.+|++++...-.+.+..
T Consensus 10 ~~~V~v~t~-dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADV-EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEET-TSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CCEEEEEeC-CCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 356777775 588999999999999999864 00111111 1244566654 68899999999987665555532
Q ss_pred -CCeeeeeceeeEe-------eCCEEEEEecCCCeEEEEeCCCCeEEEEEECC
Q 019103 231 -KGREVRNLNELEF-------IKGEVWANVWQTDCIARISHEDGVVLGWVLLP 275 (346)
Q Consensus 231 -~G~pv~~lNELE~-------~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~ 275 (346)
...|+..-..--. .+|.||+..+ ...++.||.+||+++-+....
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~-~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSM-RTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEE-EEEEEEEETTTCCEEEEESTT
T ss_pred eeccccccCCCceeecccccccCCEEEEEec-CCEEEEEECCCCcEEEEEecC
Confidence 1112210000001 5778998875 778999999999999888663
|
| >3s9j_A Member of DUF4221 family; 6-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.75A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.45 Score=46.54 Aligned_cols=152 Identities=10% Similarity=0.038 Sum_probs=95.7
Q ss_pred cCCE--EEEEcCCCCCC--eEEEEECCCCcEEEEeccCC-CeeEE-----EEE-EeCCEEEEEEeeCCEEEEEECCCCcE
Q 019103 114 ENDT--LFESTGLYGRS--SVRRVALETGKVEAINQMEG-SYFGE-----GLT-LLGEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 114 ~d~~--LyeStGlyg~s--~V~~iDl~Tgkv~~~~~l~~-~~Fge-----Git-~~g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
.+|+ ||-=+. ..+ .|.++|++++++++++++.. +|=|. |+- ...+.||+.++....++.+| ..+++
T Consensus 36 ~~~k~yL~~~N~--~~~~~~i~~iDL~~~kl~k~i~~ekEGPNgi~~~~~~~~i~~~DsI~i~~~~~~~i~l~n-~~G~~ 112 (369)
T 3s9j_A 36 ENGKEYLHFENT--QKSLYDIVIFDIENQQIAKRIPLHKTGPNGLPAVFGSRPSPDSQYILVAQNNISRLSSIN-SQGEI 112 (369)
T ss_dssp ETTEEEEEEEEC--STTCCEEEEEETTTTEEEEEEECBSSSTTBCTTCCCEEESSSTTSEEEEEGGGTEEEEEC-TTCCE
T ss_pred cCCcEEEEEeCC--CCCcCcEEEEECCCCceeeeeccccCCCCCcccceeeEEecCCCEEEEEeCCcceEEEEC-CCceE
Confidence 4554 444444 556 99999999999999998842 11111 232 24588999999999999999 46899
Q ss_pred EEEEecC-CCceeEEee-------------CCCEEEEE-C------------CCCeEEEEeCCCCcEEEEEEe--cc-CC
Q 019103 183 LEEFTHQ-MKDGWGLAT-------------DGKVLFGS-D------------GSSMLYQIDPQTLKVIRKDIV--RY-KG 232 (346)
Q Consensus 183 i~ti~~~-~peGwGLt~-------------Dg~~LyvS-d------------Gs~~l~vIDp~T~kvi~~I~V--~~-~G 232 (346)
+.++... .+.+ +++ ++..+|++ + ....++.+|+.+.++. .+.+ .. .+
T Consensus 113 ~~k~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~a~~dl~~~~~~-~l~l~yP~~~~ 189 (369)
T 3s9j_A 113 IRNYNFQTPEGR--FTPLSFGSYYNAPAFIKDSCIFLRQEILKPDMKKEDWPRTHMFASQDLRTGEVK-WIPIFYPPIFK 189 (369)
T ss_dssp EEEEECCCTTSC--CCCCCCBTTTTBCCEEETTEEEEECCCSSSSCCGGGGGGSEEEEEEETTTCCEE-EEEEECCSCCC
T ss_pred EEEEecCCCccc--cccccccccccCcceecCceEEEeccccccccchhhhccCceEEEEECCCCcEE-EeeccCCcccc
Confidence 9998874 2233 331 13346774 2 1337899999988875 2333 21 01
Q ss_pred eee----e-eceee--EeeCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Q 019103 233 REV----R-NLNEL--EFIKGEVWANVWQTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 233 ~pv----~-~lNEL--E~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~ 273 (346)
..+ + .-.+. .+.+++++.+-+.++.|.+.| .++. +.+++
T Consensus 190 ~~~~~~~~~~~~~~s~~~~~~~~Iis~~~~dsIyv~~-~~~~-~~~~~ 235 (369)
T 3s9j_A 190 EEYDNIAGGYGFSYDYNYKESRLVCGFFGYDSLMVTD-DLKH-IRWYN 235 (369)
T ss_dssp CCCSSEEECCCEEEEEETTTTEEEEEETTCSEEEEES-SSSC-EEEEE
T ss_pred cccccccCCccceeEEEEECCEEEEEeccCCeEEEEc-Cccc-eeeec
Confidence 110 0 00111 123689999999999999998 4444 45443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.35 Score=50.52 Aligned_cols=162 Identities=13% Similarity=0.072 Sum_probs=89.8
Q ss_pred CcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCc--E-EEEe-cc-CCCeeEEEEE-EeCCEEEEEEeeC----CEEE
Q 019103 105 AFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGK--V-EAIN-QM-EGSYFGEGLT-LLGEKLFQVTWLQ----KTGF 173 (346)
Q Consensus 105 ~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgk--v-~~~~-~l-~~~~FgeGit-~~g~~LY~ltw~~----~~v~ 173 (346)
.|..++.+++||+ |+.+....+.+.|.++|+++++ . +..+ +- ....|. +. ..|++||.++..+ ..++
T Consensus 271 ~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s--~~~~~g~~l~~~t~~~~a~~~~L~ 348 (751)
T 2xe4_A 271 LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD--VQMHGTSHLVILTNEGGAVNHKLL 348 (751)
T ss_dssp TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE--EEEETTTEEEEEECTTTCTTCEEE
T ss_pred ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE--EeeeeCCEEEEEeCCCCCCCcEEE
Confidence 4556888999994 5555444467899999999863 2 0222 11 111121 22 2388999887654 4899
Q ss_pred EEECCCCcEEEE--EecCCC-ceeEEeeCCCEEEEE---CCCCeEEEEeC-------CCCcEEEEEEeccCCeeeeec-e
Q 019103 174 IYDQNNLNKLEE--FTHQMK-DGWGLATDGKVLFGS---DGSSMLYQIDP-------QTLKVIRKDIVRYKGREVRNL-N 239 (346)
Q Consensus 174 V~D~~tl~~i~t--i~~~~p-eGwGLt~Dg~~LyvS---dGs~~l~vIDp-------~T~kvi~~I~V~~~G~pv~~l-N 239 (346)
++|.++.....+ ++.... .-.+++.++++|+++ ||...|+++|+ .+.+....|.....+...... |
T Consensus 349 ~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~ 428 (751)
T 2xe4_A 349 IAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVES 428 (751)
T ss_dssp EEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGG
T ss_pred EEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccC
Confidence 999875322222 332200 112356678887764 46779999996 444413444443322111100 0
Q ss_pred ee--EeeCCEEEE--EecCC-CeEEEEeCCCCeEE
Q 019103 240 EL--EFIKGEVWA--NVWQT-DCIARISHEDGVVL 269 (346)
Q Consensus 240 EL--E~~~G~Lya--Nv~~s-n~I~vID~~TG~Vv 269 (346)
. ++.+++++. +...+ ..|..+|.++|+..
T Consensus 429 -~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 429 -QMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp -GCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred -cccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 0 233444443 33332 46899999998753
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.076 Score=51.40 Aligned_cols=112 Identities=9% Similarity=0.066 Sum_probs=78.2
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC--CCeeEE--EEEEeCCEEEEEE-eeCCEEEEEECCCCcEEEEEecC
Q 019103 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGE--GLTLLGEKLFQVT-WLQKTGFIYDQNNLNKLEEFTHQ 189 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~--~~~Fge--Git~~g~~LY~lt-w~~~~v~V~D~~tl~~i~ti~~~ 189 (346)
++.+|++|. +..|+.+|.+||+++=+++.+ ..+... +....++.+|+.. -.++.++.+|++++...-.+..+
T Consensus 10 ~~~V~v~t~---dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 10 SDILIAADV---EGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEEEET---TSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred CCEEEEEeC---CCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 368888876 459999999999998887665 222210 0011245788886 57999999999999777666653
Q ss_pred ---CCceeEEe-----------eCCCEEEEECCCCeEEEEeCCCCcEEEEEEec
Q 019103 190 ---MKDGWGLA-----------TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 190 ---~peGwGLt-----------~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~ 229 (346)
.-.+...+ .+++.+|+...+.+++.||++|++++-+..++
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 00111111 15778888766789999999999998887765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=94.17 E-value=1.2 Score=43.54 Aligned_cols=132 Identities=10% Similarity=0.005 Sum_probs=81.6
Q ss_pred EEEeCCEEEEEEeeCCEEEEEECCCCc-----------EEEEEecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEE
Q 019103 155 LTLLGEKLFQVTWLQKTGFIYDQNNLN-----------KLEEFTHQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVI 223 (346)
Q Consensus 155 it~~g~~LY~ltw~~~~v~V~D~~tl~-----------~i~ti~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi 223 (346)
++...+.++.+.. +.+.|+++++++ ....++++.....++ |+++|+++++ +.|+++|..++...
T Consensus 45 is~~~gll~a~~~--~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~~~-~~l~v~dv~sl~~~ 119 (388)
T 1xip_A 45 ISNSKSLFVAASG--SKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVSTR-NALYSLDLEELSEF 119 (388)
T ss_dssp EETTTTEEEEEET--TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEEES-SEEEEEESSSTTCE
T ss_pred EcCCCCEEEEeCC--CEEEEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEEcC-CcEEEEEchhhhcc
Confidence 4444566666664 577778776655 224556553344444 9999999954 69999999998876
Q ss_pred EEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019103 224 RKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 224 ~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
.++.... .++ +.+-+.... ++.+-.++.|.+.|.+++.... + .. ..-.+||+|+|
T Consensus 120 ~~~~~~~--~~v---~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~-~-----~~-----------~Vs~v~WSpkG-- 174 (388)
T 1xip_A 120 RTVTSFE--KPV---FQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ-L-----AQ-----------NVTSFDVTNSQ-- 174 (388)
T ss_dssp EEEEECS--SCE---EEEEECSSE-EEEEETTSEEEEEETTTCCEEE-E-----EE-----------SEEEEEECSSE--
T ss_pred Cccceee--cce---eeEEecCCC-EEEEECCCCEEEEEccCCcccc-c-----cC-----------CceEEEEcCCc--
Confidence 6665433 222 233333334 4445567889999999888643 1 10 23579999999
Q ss_pred EEEecCCCCcEEEE
Q 019103 304 IFVTGKLWPKLYEI 317 (346)
Q Consensus 304 LfVTGK~Wp~l~ev 317 (346)
+.+..+ .+++...
T Consensus 175 ~~vg~~-dg~i~~~ 187 (388)
T 1xip_A 175 LAVLLK-DRSFQSF 187 (388)
T ss_dssp EEEEET-TSCEEEE
T ss_pred eEEEEc-CCcEEEE
Confidence 444444 3555444
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=93.97 E-value=4.9 Score=39.98 Aligned_cols=206 Identities=13% Similarity=-0.017 Sum_probs=102.8
Q ss_pred eeEEEecC----CEEEEEcCCCC----------CCeEEEEECCC----------CcEEEEec-cCCCeeEEEEEEeC-CE
Q 019103 108 QGLLYAEN----DTLFESTGLYG----------RSSVRRVALET----------GKVEAINQ-MEGSYFGEGLTLLG-EK 161 (346)
Q Consensus 108 qGL~~~~d----~~LyeStGlyg----------~s~V~~iDl~T----------gkv~~~~~-l~~~~FgeGit~~g-~~ 161 (346)
.||+++|+ +.||++-...+ .+.|.++.+.. .+++..++ -....+|-.|+... +.
T Consensus 72 lgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~ 151 (463)
T 2wg3_C 72 LSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF 151 (463)
T ss_dssp EEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC
T ss_pred eeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc
Confidence 57899975 68888732111 14777776642 24554444 23456788888853 68
Q ss_pred EEEEEee-----------------CCEEEEEECCCC------c-------------EEEEEecC--CCceeEEeeCC---
Q 019103 162 LFQVTWL-----------------QKTGFIYDQNNL------N-------------KLEEFTHQ--MKDGWGLATDG--- 200 (346)
Q Consensus 162 LY~ltw~-----------------~~~v~V~D~~tl------~-------------~i~ti~~~--~peGwGLt~Dg--- 200 (346)
||+++-. .++|+.+|++.. + ...-+.++ .|.|.++.++.
T Consensus 152 LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~ 231 (463)
T 2wg3_C 152 LYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDI 231 (463)
T ss_dssp EEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSST
T ss_pred EEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCc
Confidence 9998643 367999998762 0 12234555 35555556542
Q ss_pred --C-EEEEEC--CC----CeEEEEeCCC-CcEEEEEEeccCCeee-eeceeeEee--------CCEEEEEecCCCeEEEE
Q 019103 201 --K-VLFGSD--GS----SMLYQIDPQT-LKVIRKDIVRYKGREV-RNLNELEFI--------KGEVWANVWQTDCIARI 261 (346)
Q Consensus 201 --~-~LyvSd--Gs----~~l~vIDp~T-~kvi~~I~V~~~G~pv-~~lNELE~~--------~G~LyaNv~~sn~I~vI 261 (346)
+ ++|++| |. ++|..+-+-. +-.. -++-..+... ..+.-+.+. .|.+|+..|. ..|.++
T Consensus 232 ~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~--~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~ 308 (463)
T 2wg3_C 232 NINLTILCSDSNGKNRSSARILQIIKGKDYESE--PSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTL 308 (463)
T ss_dssp TCSEEEEEECC------CEEEEEEC----CCSC--CCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEE
T ss_pred ccceEEEecccCCCCCCCCeEeeeccCCCCCCC--CCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEE
Confidence 2 788898 32 2344442111 0000 0000000000 001112222 2457777775 668888
Q ss_pred eCCCCeEE-EEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec------CCCCcEEEEE
Q 019103 262 SHEDGVVL-GWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG------KLWPKLYEIN 318 (346)
Q Consensus 262 D~~TG~Vv-~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG------K~Wp~l~ev~ 318 (346)
..+.+... ..-.+ +.+...........-|-+++.+|||..++++. +.-++||+|.
T Consensus 309 ~~~~~~~~~~~~~~--~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 309 QQSPVTKQWQEKPL--CLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp EC-----CCEEEEE--CEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred EeCCCCceeeEEEe--ecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 76554321 11111 00000000001123578999999987666663 2467899996
|
| >3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=3.6 Score=42.55 Aligned_cols=139 Identities=19% Similarity=0.171 Sum_probs=88.2
Q ss_pred EEEEECCCCcEEEEEecC------C----C----ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeee
Q 019103 172 GFIYDQNNLNKLEEFTHQ------M----K----DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRN 237 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~------~----p----eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~ 237 (346)
.++||. +++++-..+.. . + -||--.+||..++.. | ..++.+|. .++++.++....+-...+
T Consensus 177 ~~i~D~-~G~lrW~~~~~~~~~~~~~~~~~~g~l~~~~g~~nG~l~~g~-G-~~i~elD~-~Gkvv~~~~lp~g~~~~H- 251 (571)
T 3elq_A 177 TFIVDT-EGEYRWWLDQDTFYDGRDRDINKRGYLMGIRETPRGTFTAVQ-G-QHWYEFDM-MGQVLEDHKLPRGFADAT- 251 (571)
T ss_dssp EEEECT-TSCEEEECCGGGTCCSSSCCGGGCSCCEEEEECTTSCEEEEE-B-TEEEEECT-TCCEEEEEECCTTEECBC-
T ss_pred eEEEcC-CCcEEEEeCcccccccceeeccCCCeEEEEEecCCCCEEEec-C-cEEEEECC-CCcEEEEEECCCCccccc-
Confidence 689994 67777766542 0 1 134445677777764 3 46999996 688888777743101111
Q ss_pred ceeeE-eeCCEEEEEe--------------cCCCeEEEEeCCCCeEEEEEECCchhhhhh-------------------h
Q 019103 238 LNELE-FIKGEVWANV--------------WQTDCIARISHEDGVVLGWVLLPNLRERLV-------------------A 283 (346)
Q Consensus 238 lNELE-~~~G~LyaNv--------------~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~-------------------~ 283 (346)
-|.. ..+|.+++.+ +..+.|..|| +||+|+-.+++.+..+... .
T Consensus 252 -HD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~ 329 (571)
T 3elq_A 252 -HESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAH 329 (571)
T ss_dssp -SCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CC
T ss_pred -cceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCCEEEEEEhHHccCcccccchhccccccccccccccc
Confidence 1332 3366544422 2367899999 9999999997643321100 0
Q ss_pred cc-------------------CCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 284 AG-------------------YNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 284 ~~-------------------~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
++ ..+-.-.|.|.|++.++.+.|..++- .|+.|.
T Consensus 330 ~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd~~liSsR~~-~I~~Id 382 (571)
T 3elq_A 330 AGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDDSIILSSRHQ-GVVKIG 382 (571)
T ss_dssp CSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred cccccccccccccccccccCCCCCCcEecceeEcCCCCEEEEECCcc-EEEEEc
Confidence 00 01223589999999889999999999 999986
|
| >3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* | Back alignment and structure |
|---|
Probab=85.97 E-value=16 Score=37.66 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=53.4
Q ss_pred EEeeCCCEEEEE--------CC------CCeEEEEeCCCCcEEEEEEeccC--------------------------C--
Q 019103 195 GLATDGKVLFGS--------DG------SSMLYQIDPQTLKVIRKDIVRYK--------------------------G-- 232 (346)
Q Consensus 195 GLt~Dg~~LyvS--------dG------s~~l~vIDp~T~kvi~~I~V~~~--------------------------G-- 232 (346)
-.+++|..|+.+ || .+.|..|| +|++++-.+...++ |
T Consensus 255 ~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~ 333 (571)
T 3elq_A 255 IETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQ 333 (571)
T ss_dssp EECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCB
T ss_pred EEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccc
Confidence 356677777643 22 55899999 99999988876431 0
Q ss_pred ------------------eeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEE
Q 019103 233 ------------------REVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 233 ------------------~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I 272 (346)
.--.++|.+++. ++.+.+..=.+ .|..||. +|+|+=++
T Consensus 334 ~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd~~liSsR~~-~I~~Id~-tG~V~W~L 391 (571)
T 3elq_A 334 AKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDDSIILSSRHQ-GVVKIGR-DKQVKWIL 391 (571)
T ss_dssp CCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTTEEEEEETTT-EEEEEET-TSCEEEEE
T ss_pred cccccccccccccccCCCCCCcEecceeEcCCCCEEEEECCcc-EEEEEcC-CCcEEEEE
Confidence 111358888887 45788888778 8999996 99986655
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=85.50 E-value=13 Score=38.95 Aligned_cols=152 Identities=16% Similarity=0.101 Sum_probs=82.5
Q ss_pred eeEE-EecCC-E-EE-EEcCCCCCCeEEEEECCCCcEEEEeccCCCeeE-------EEEEE-eCCEEEEEE-e-------
Q 019103 108 QGLL-YAEND-T-LF-ESTGLYGRSSVRRVALETGKVEAINQMEGSYFG-------EGLTL-LGEKLFQVT-W------- 167 (346)
Q Consensus 108 qGL~-~~~d~-~-Ly-eStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fg-------eGit~-~g~~LY~lt-w------- 167 (346)
.|+. +++|+ + || +|.|..+...|+++|++|++.+.....+...+| .+++. +++.+|+.+ +
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence 7887 78887 3 33 677756778899999999998643211211111 12233 567777764 2
Q ss_pred --eCCEEEEEECCCCcEEEE--EecC---CCceeEEeeCCC----EEEEEC--C--CCeEEEEeCCC--CcEEEEEEecc
Q 019103 168 --LQKTGFIYDQNNLNKLEE--FTHQ---MKDGWGLATDGK----VLFGSD--G--SSMLYQIDPQT--LKVIRKDIVRY 230 (346)
Q Consensus 168 --~~~~v~V~D~~tl~~i~t--i~~~---~peGwGLt~Dg~----~LyvSd--G--s~~l~vIDp~T--~kvi~~I~V~~ 230 (346)
...+++.--.-|-..-.+ |.-+ .--+-+.+.|++ +++++. + .+.++++|+.. .+ ..++.+..
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPS 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCC
Confidence 235555554433211111 1111 112233566777 356642 2 57899998753 33 23333322
Q ss_pred CCeeeeeceeeEeeCCEEEEE---ec-------CCCeEEEEeCCCC
Q 019103 231 KGREVRNLNELEFIKGEVWAN---VW-------QTDCIARISHEDG 266 (346)
Q Consensus 231 ~G~pv~~lNELE~~~G~LyaN---v~-------~sn~I~vID~~TG 266 (346)
+-.. ++..+|.+|+- +| ....|+++|.+++
T Consensus 291 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 330 (711)
T 4hvt_A 291 DATL------QGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDL 330 (711)
T ss_dssp TCEE------EEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGG
T ss_pred cceE------eeeECCEEEEEECcccccccccCCCCeEEEEECCcc
Confidence 1111 45678888872 33 4566888887664
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=83.91 E-value=30 Score=36.30 Aligned_cols=194 Identities=14% Similarity=0.093 Sum_probs=102.5
Q ss_pred eeEEEecCCEEEEEcCCC--------CCCeEEEEECCCC----cEEEEeccCCCeeEEEEEEeCC----EEEEE---Eee
Q 019103 108 QGLLYAENDTLFESTGLY--------GRSSVRRVALETG----KVEAINQMEGSYFGEGLTLLGE----KLFQV---TWL 168 (346)
Q Consensus 108 qGL~~~~d~~LyeStGly--------g~s~V~~iDl~Tg----kv~~~~~l~~~~FgeGit~~g~----~LY~l---tw~ 168 (346)
.++...+++.+|+++-.- -..+|..+-.-|. +++-.-+-..-.++.+.+.+++ ++++. ++.
T Consensus 188 ~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 267 (711)
T 4hvt_A 188 TYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFY 267 (711)
T ss_dssp CCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSS
T ss_pred ceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccC
Confidence 344666567888875210 0235666655443 2222222222233444455555 35554 456
Q ss_pred CCEEEEEECCCC-cEEEEEecCCCceeE-EeeCCCEEEE-E--C--------CCCeEEEEeCCCCc-------EEEEEEe
Q 019103 169 QKTGFIYDQNNL-NKLEEFTHQMKDGWG-LATDGKVLFG-S--D--------GSSMLYQIDPQTLK-------VIRKDIV 228 (346)
Q Consensus 169 ~~~v~V~D~~tl-~~i~ti~~~~peGwG-Lt~Dg~~Lyv-S--d--------Gs~~l~vIDp~T~k-------vi~~I~V 228 (346)
.+.++++|.++- ..+.++..+ ...+ +...+++||+ + | ...+|..+|.+++. .-..+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 345 (711)
T 4hvt_A 268 NYDNYILDTKYKNLKLQKINMP--SDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFT 345 (711)
T ss_dssp CEEEEEEECSSSSCEEEECCSC--TTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEEC
T ss_pred ceeEEEEcCCCCCCcceEeecC--CcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEEC
Confidence 688999997631 123444443 3334 3555667777 2 3 25579999987652 1122223
Q ss_pred ccCCeeeeeceeeEeeCCEEEEEecC--CCeEEEEeCCCCeE-EEE-EECCchhhhhhhccCCCCceeeEEEEeCCCCEE
Q 019103 229 RYKGREVRNLNELEFIKGEVWANVWQ--TDCIARISHEDGVV-LGW-VLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRI 304 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~~G~LyaNv~~--sn~I~vID~~TG~V-v~~-I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~L 304 (346)
..... .+..+.+.+++|+++.-. ...|.++|+++|+. +.. ++++.. ....+...+++++++
T Consensus 346 ~~~~~---~l~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~------------~~~~~~~~~~~~~~~ 410 (711)
T 4hvt_A 346 PTANE---VFNFISTTKDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ------------NAIFGMSSYEEEEEA 410 (711)
T ss_dssp CCTTE---EEEEEEECSSCEEEEEEETTEEEEEEECEETTEECCCEEECCCST------------TCEEEEECCTTCSCE
T ss_pred CCCCC---eEEEEEEECCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCC------------eEEEEEeecCcCCEE
Confidence 22222 344566777777765432 34688999988862 233 544221 123455566777777
Q ss_pred EEecCCC---CcEEEEE
Q 019103 305 FVTGKLW---PKLYEIN 318 (346)
Q Consensus 305 fVTGK~W---p~l~ev~ 318 (346)
+++.... +.+|.+.
T Consensus 411 ~~~~ss~~~P~~~~~~d 427 (711)
T 4hvt_A 411 LITIENSIVPPTIYLWV 427 (711)
T ss_dssp EEEEECSSSCCEEEEEC
T ss_pred EEEEecCCCCCEEEEEe
Confidence 7665443 4555553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 346 | |||
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.79 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.71 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.66 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.65 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.65 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.62 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.59 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.56 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.52 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.52 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.51 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.5 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.49 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.48 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.44 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.43 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.43 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.41 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.4 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.38 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.38 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.34 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.34 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.33 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.33 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.33 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.31 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 99.3 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.2 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.2 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.19 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.18 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 99.18 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.16 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.16 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.08 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 99.05 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.04 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.99 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.91 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.86 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.82 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.81 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.78 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.7 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.63 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.63 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.61 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.58 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.5 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.45 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.44 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.44 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.39 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.35 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.33 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.23 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.22 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.21 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.15 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.04 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 98.02 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.0 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.0 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.99 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.96 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.91 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.89 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.81 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.73 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.69 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.6 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.56 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.5 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.45 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.39 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.39 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.31 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.3 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.96 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 96.93 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.79 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 96.58 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.48 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.41 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.17 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 95.56 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.54 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.53 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.48 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.96 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 94.66 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.31 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 94.03 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 93.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 92.45 |
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.79 E-value=4.2e-17 Score=142.53 Aligned_cols=210 Identities=15% Similarity=0.181 Sum_probs=162.7
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCC
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQK 170 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~ 170 (346)
+.+++++++++..| +|++|+||| .||++.. +..+|.+||+.+++.+..++.+..+.+..+..+++.+|+..+.++
T Consensus 21 t~~~~~~i~~g~~p--~~va~spdG~~l~v~~~--~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (301)
T d1l0qa2 21 SNKVTATIPVGSNP--MGAVISPDGTKVYVANA--HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASS 96 (301)
T ss_dssp TTEEEEEEECSSSE--EEEEECTTSSEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT
T ss_pred CCeEEEEEECCCCc--eEEEEeCCCCEEEEEEC--CCCEEEEEECCCCceeeeeeccccccccccccccccccccccccc
Confidence 67899999998777 699999998 5888876 566999999999999999988777655555556788999999999
Q ss_pred EEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEecc---------CCeeeee--
Q 019103 171 TGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY---------KGREVRN-- 237 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~---------~G~pv~~-- 237 (346)
.+.++|..+.+.+..++.. .+....+++||+.++++. .+..+.++|..+.+.+..+.... ++..+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (301)
T d1l0qa2 97 TLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVAN 176 (301)
T ss_dssp EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred eeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeec
Confidence 9999999999999999875 456677899999998866 57889999999988876654322 1110000
Q ss_pred -------------------------ceeeEee--CCEEEEEecC--CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCC
Q 019103 238 -------------------------LNELEFI--KGEVWANVWQ--TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNG 288 (346)
Q Consensus 238 -------------------------lNELE~~--~G~LyaNv~~--sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~ 288 (346)
.+.+.+. +.++|+.... .+.|.++|+.+++++..++..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~------------- 243 (301)
T d1l0qa2 177 FDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG------------- 243 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-------------
T ss_pred ccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-------------
Confidence 0001111 3367765543 367999999999999998652
Q ss_pred CceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 289 IDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 289 ~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.-|++|||+|+|++||||+...++|..+++
T Consensus 244 -~~~~~va~spdg~~l~va~~~~~~i~v~D~ 273 (301)
T d1l0qa2 244 -PDPAGIAVTPDGKKVYVALSFCNTVSVIDT 273 (301)
T ss_dssp -SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred -CCEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence 146999999999999999998888887765
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.71 E-value=2.8e-15 Score=130.73 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=148.0
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeE
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWG 195 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwG 195 (346)
-+|+++. ++++|.+||++|+|++++++++..+.+..++++|++||++...++.+.++|.++++.+++++.+ .+.+..
T Consensus 3 ~~yV~~~--~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~ 80 (301)
T d1l0qa2 3 FAYIANS--ESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80 (301)
T ss_dssp EEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred EEEEEEC--CCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccc
Confidence 4788877 6779999999999999999999888776666678999999999999999999999999999875 567788
Q ss_pred EeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEE
Q 019103 196 LATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 196 Lt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I 272 (346)
+++|++.++++. ++..+.++|..+++....+.... .+. .+.+. +..+++....+..+.+.|..+++.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (301)
T d1l0qa2 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK--SPL----GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (301)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS--SEE----EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccccccccccccceeeecccccceeeeeccccc--cce----EEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence 899999999976 67899999999999998887754 232 23333 4478888888999999999999999888
Q ss_pred ECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 273 LLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 273 ~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
... ..+..++++++++.+|+++..-..++.
T Consensus 155 ~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (301)
T d1l0qa2 155 SVG--------------RSPKGIAVTPDGTKVYVANFDSMSISV 184 (301)
T ss_dssp ECC--------------SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ccC--------------CCceEEEeeccccceeeeccccccccc
Confidence 551 246889999999999999876555443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.66 E-value=6.2e-16 Score=153.32 Aligned_cols=207 Identities=13% Similarity=0.043 Sum_probs=154.6
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-----------------------------Ce--eEEEEEEeCCEEEEE
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEG-----------------------------SY--FGEGLTLLGEKLFQV 165 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-----------------------------~~--FgeGit~~g~~LY~l 165 (346)
-+|+|.|. +.+|++||+.++++++++++-. ++ .....+++|++||+.
T Consensus 12 y~f~Sgg~--sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~ 89 (441)
T d1qnia2 12 YGFWSGGH--QGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIN 89 (441)
T ss_dssp EEEEECBT--TCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEE
T ss_pred EEEEeCCC--CCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEE
Confidence 36888885 4599999999999999986510 01 011125688999999
Q ss_pred EeeCCEEEEEECCCCcEEEEEec--C-CCceeEEeeCCCEEEEEC-CCCeE------------------EEEeCCCCcEE
Q 019103 166 TWLQKTGFIYDQNNLNKLEEFTH--Q-MKDGWGLATDGKVLFGSD-GSSML------------------YQIDPQTLKVI 223 (346)
Q Consensus 166 tw~~~~v~V~D~~tl~~i~ti~~--~-~peGwGLt~Dg~~LyvSd-Gs~~l------------------~vIDp~T~kvi 223 (346)
++.+++|.++|++|++..+.++. + .|.|..+++||+++||++ +++.+ ..||++|+++.
T Consensus 90 d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~ 169 (441)
T d1qnia2 90 DKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA 169 (441)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE
T ss_pred cCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceee
Confidence 99999999999999999886654 3 578888999999999976 45554 56999999999
Q ss_pred EEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhh---------------------
Q 019103 224 RKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLV--------------------- 282 (346)
Q Consensus 224 ~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~--------------------- 282 (346)
.+|.|+.+ |.. -.+.+.++++|++++.++.+++||..+.+++.++.+.+......
T Consensus 170 ~qI~v~~~--p~~--v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~ 245 (441)
T d1qnia2 170 WQVIVDGN--LDN--TDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGR 245 (441)
T ss_dssp EEEEESSC--CCC--EEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECS
T ss_pred EEEecCCC--ccc--eEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcc
Confidence 99999653 322 12344567899999999888888887777776664433211100
Q ss_pred -h----ccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeeccccccCC
Q 019103 283 -A----AGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREMKRERKDG 329 (346)
Q Consensus 283 -~----~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~~~~~~~~ 329 (346)
. ...|.+.-|.||+++|||+.+||+||..+++.-+.+.-+.+-++..
T Consensus 246 ~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~ 297 (441)
T d1qnia2 246 GESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDK 297 (441)
T ss_dssp SSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTS
T ss_pred cCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhcc
Confidence 0 0125566799999999999999999999999999986555544444
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=6.7e-15 Score=142.09 Aligned_cols=202 Identities=13% Similarity=0.030 Sum_probs=150.3
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCc-
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLN- 181 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~- 181 (346)
+.+..+-...+.++.++++.. ++++|.+||.+|++++++++.+..+++..++++|+++|+++ .++.+.++|.+|.+
T Consensus 19 ~~~~~~~~~~~~~~~~~v~~~--d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s-~dg~v~~~d~~t~~~ 95 (432)
T d1qksa2 19 DRPTQQMNDWDLENLFSVTLR--DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEP 95 (432)
T ss_dssp GSCSSCCSCCCGGGEEEEEET--TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSC
T ss_pred cCCCceeecCCCCcEEEEEEc--CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEc-CCCCEEEEEeeCCCc
Confidence 344333333334345667866 77799999999999999999998888877778899999886 47899999987765
Q ss_pred -EEEEEecC-CCceeEE----eeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccC---Ceee---eeceeeEee--CC
Q 019103 182 -KLEEFTHQ-MKDGWGL----ATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYK---GREV---RNLNELEFI--KG 246 (346)
Q Consensus 182 -~i~ti~~~-~peGwGL----t~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~---G~pv---~~lNELE~~--~G 246 (346)
.+.+++.+ .+.|+.+ ++||++||+++ .+++|.++|.+++++++.+..... ...+ .....+-+. +.
T Consensus 96 ~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~ 175 (432)
T d1qksa2 96 TTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 175 (432)
T ss_dssp CEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred eEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence 66778765 3566665 45999999988 588999999999999998876431 1111 111112111 34
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
++|++.+.++.|.+||..+++......+ +.+..|+++|++|+++++|+++...+.+..+.+
T Consensus 176 ~~~vs~~~~~~i~~~d~~~~~~~~~~~i------------~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~ 236 (432)
T d1qksa2 176 EFIVNVKETGKILLVDYTDLNNLKTTEI------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDT 236 (432)
T ss_dssp EEEEEETTTTEEEEEETTCSSEEEEEEE------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred EEEEEEccCCeEEEEEccCCCcceEEEE------------cccCccccceECCCCCEEEEeccccceEEEeec
Confidence 7889999999999999999885543322 113368999999999999999999988887766
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=2.7e-14 Score=125.72 Aligned_cols=205 Identities=17% Similarity=0.225 Sum_probs=149.3
Q ss_pred eeEEEEEEecC-CCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCC------CeeEEEEEEeCCEEE
Q 019103 92 TIQVVNEFPHD-PRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG------SYFGEGLTLLGEKLF 163 (346)
Q Consensus 92 t~~Vv~t~phd-~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~------~~FgeGit~~g~~LY 163 (346)
+.+++++++.. ......+++|+|||+ ||+++. +.+.|.+||++||+++.++..+. .+++..++.+++.+|
T Consensus 20 s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~--~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~ 97 (337)
T d1pbyb_ 20 KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN--KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLA 97 (337)
T ss_dssp TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET--TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEE
T ss_pred CCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEE
Confidence 56889999853 223346999999985 788866 45699999999999999987643 234555666788999
Q ss_pred EEEe-----------eCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC
Q 019103 164 QVTW-----------LQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK 231 (346)
Q Consensus 164 ~ltw-----------~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~ 231 (346)
.+.. ....+.++|..+++.+.+++.+ .+.+..+++||+++|++++ .+.++|+.+.+++.++.++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~ 175 (337)
T d1pbyb_ 98 IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTT
T ss_pred EeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCc
Confidence 8865 4678999999999999999875 5688899999999999874 467899999999888876431
Q ss_pred ---------Ceeee----------ec---------------------------e-----eeEee------------CCEE
Q 019103 232 ---------GREVR----------NL---------------------------N-----ELEFI------------KGEV 248 (346)
Q Consensus 232 ---------G~pv~----------~l---------------------------N-----ELE~~------------~G~L 248 (346)
+..+. .. + +.... +..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (337)
T d1pbyb_ 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEE
Confidence 00000 00 0 00000 1234
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 249 WANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 249 yaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
|++ .+.|.++|+++++++.+++.+ ..+++|||+|+|++|||++.. ++|.-.+
T Consensus 256 ~~~---~~~i~v~d~~~~~~~~~~~~~--------------~~~~~~~~s~dG~~l~v~~~~-~~i~v~D 307 (337)
T d1pbyb_ 256 FGA---YNVLESFDLEKNASIKRVPLP--------------HSYYSVNVSTDGSTVWLGGAL-GDLAAYD 307 (337)
T ss_dssp EEE---ESEEEEEETTTTEEEEEEECS--------------SCCCEEEECTTSCEEEEESBS-SEEEEEE
T ss_pred EEc---cccEEEEECCCCcEEEEEcCC--------------CCEEEEEECCCCCEEEEEeCC-CcEEEEE
Confidence 443 368999999999999999662 136899999999999998754 4555444
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.62 E-value=1.7e-15 Score=134.13 Aligned_cols=190 Identities=9% Similarity=-0.046 Sum_probs=143.7
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC--CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~--~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
|++++++++.+++++ .+++|++||++|+|++..++++. .+.+..++++|+++|+++-.++.+.++|..++++++++
T Consensus 1 g~a~~~~~~~l~~~~--~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~ 78 (346)
T d1jmxb_ 1 GPALKAGHEYMIVTN--YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 78 (346)
T ss_dssp CCCCCTTCEEEEEEE--TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CccCCCCCcEEEEEc--CCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence 788998898887777 45799999999999999998854 45455555578899999999999999999999999998
Q ss_pred ecC--------CCceeEEeeCCCEEEEEC------------CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCC
Q 019103 187 THQ--------MKDGWGLATDGKVLFGSD------------GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKG 246 (346)
Q Consensus 187 ~~~--------~peGwGLt~Dg~~LyvSd------------Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G 246 (346)
+.. .+.+..+++||+++|+++ ....+.++|.++++..+.+.+...+...... ..-.++
T Consensus 79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 156 (346)
T d1jmxb_ 79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM--RAADDG 156 (346)
T ss_dssp ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE--EECTTS
T ss_pred cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEE--EecCCC
Confidence 753 367888999999999975 2567888999998887777665433322211 112367
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
++|+. .+.+.++|+.+++++..++... .+.+++++|++..+|+++.....+.....
T Consensus 157 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (346)
T d1jmxb_ 157 SLYVA---GPDIYKMDVKTGKYTVALPLRN--------------WNRKGYSAPDVLYFWPHQSPRHEFSMLYT 212 (346)
T ss_dssp CEEEE---SSSEEEECTTTCCEEEEECSTT--------------CCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred EEEEe---CCcceEEEccCCCEEEEEecCC--------------CccceEEeccccEEEEEecCCCceEeeee
Confidence 88875 3578999999999999986522 23456677778888877777666655443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.59 E-value=8.7e-14 Score=127.34 Aligned_cols=214 Identities=14% Similarity=0.153 Sum_probs=148.9
Q ss_pred CCCCceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEE
Q 019103 85 DQSPSIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLF 163 (346)
Q Consensus 85 ~~~~~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY 163 (346)
+..+.....+|+.++|. ..|.+|+++++||+||++.. ..++|.++|++ |+......++..+.+ ++.. ++++|
T Consensus 10 ~~~~~~~~~~v~~~~p~--~~~~e~iAv~pdG~l~vt~~--~~~~I~~i~p~-g~~~~~~~~~~~~~g--la~~~dG~l~ 82 (302)
T d2p4oa1 10 DKPIELAPAKIITSFPV--NTFLENLASAPDGTIFVTNH--EVGEIVSITPD-GNQQIHATVEGKVSG--LAFTSNGDLV 82 (302)
T ss_dssp TSCBCCCCEEEEEEECT--TCCEEEEEECTTSCEEEEET--TTTEEEEECTT-CCEEEEEECSSEEEE--EEECTTSCEE
T ss_pred cCcccCCcccEEEECCC--CCCcCCEEECCCCCEEEEeC--CCCEEEEEeCC-CCEEEEEcCCCCcce--EEEcCCCCeE
Confidence 34556667899999996 34789999999999999977 56799999977 556566677777655 5554 34699
Q ss_pred EEEeeCCEEEEEECCCC--cEEEEEec--C-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEecc-----CC
Q 019103 164 QVTWLQKTGFIYDQNNL--NKLEEFTH--Q-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRY-----KG 232 (346)
Q Consensus 164 ~ltw~~~~v~V~D~~tl--~~i~ti~~--~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~-----~G 232 (346)
++++.++.+.+++..+. +...-... . .+.|..+.+|| .+|++| +...++.+|+.+.....-..-.. ..
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (302)
T d2p4oa1 83 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE 161 (302)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred EEecCCceEEEEEecccccceeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeecc
Confidence 99999999988886533 22222222 1 23444444554 778887 68899999998875432221111 11
Q ss_pred eeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 233 REVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 233 ~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
......|.+.+.++.+|+.....+.|.++|......+..... . .....|.|||+|++|+ |||+...-+
T Consensus 162 ~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~---~--------~~~~~pdgia~d~dG~-l~va~~~~~ 229 (302)
T d2p4oa1 162 SVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEI---F--------VEQTNIDDFAFDVEGN-LYGATHIYN 229 (302)
T ss_dssp CCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEE---E--------EESCCCSSEEEBTTCC-EEEECBTTC
T ss_pred CcccccccccccCCceeeecCCCCeEEecccccccccccccc---c--------cCCCCCcceEECCCCC-EEEEEcCCC
Confidence 233356778888899999999999999999887654322211 0 1134679999999986 999987778
Q ss_pred cEEEEE
Q 019103 313 KLYEIN 318 (346)
Q Consensus 313 ~l~ev~ 318 (346)
+|++|.
T Consensus 230 ~V~~i~ 235 (302)
T d2p4oa1 230 SVVRIA 235 (302)
T ss_dssp CEEEEC
T ss_pred cEEEEC
Confidence 899884
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.56 E-value=2.1e-13 Score=126.97 Aligned_cols=197 Identities=14% Similarity=0.159 Sum_probs=136.0
Q ss_pred ceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEe-ccCCCee--EEEEEEeC-CEEEEEEee-------------
Q 019103 107 TQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAIN-QMEGSYF--GEGLTLLG-EKLFQVTWL------------- 168 (346)
Q Consensus 107 TqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~-~l~~~~F--geGit~~g-~~LY~ltw~------------- 168 (346)
..||.+++++ +||++.+ .+.|.++|++++...-.. ..+...| ...++++. +.||+.+..
T Consensus 73 P~Gl~~~~dg~~l~vad~---~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~ 149 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADM---RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ 149 (314)
T ss_dssp EEEEEECSSSSEEEEEET---TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred ceeEEEeCCCCEEEEEEC---CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceec
Confidence 3699999887 6888754 357999999876533221 2222222 34456653 689998643
Q ss_pred --CCEEEEEECCCCcEEEEEe-cCCCceeEEeeCCC----EEEEEC-CCCeEEEEeCCC-CcEEEE-EEeccCCeeeeec
Q 019103 169 --QKTGFIYDQNNLNKLEEFT-HQMKDGWGLATDGK----VLFGSD-GSSMLYQIDPQT-LKVIRK-DIVRYKGREVRNL 238 (346)
Q Consensus 169 --~~~v~V~D~~tl~~i~ti~-~~~peGwGLt~Dg~----~LyvSd-Gs~~l~vIDp~T-~kvi~~-I~V~~~G~pv~~l 238 (346)
.+.++.+|++ ++...... ...|.|.++++|++ +||++| ..++|+.+|... ..+..+ +.....+.....+
T Consensus 150 ~~~G~v~~~~~d-g~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p 228 (314)
T d1pjxa_ 150 EKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA 228 (314)
T ss_dssp SSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred cCCceEEEEeec-CceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccc
Confidence 3578899874 33333332 23578999999876 899999 588999988543 333222 2112111111122
Q ss_pred eeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEE
Q 019103 239 NELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEI 317 (346)
Q Consensus 239 NELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev 317 (346)
.-|.++ +|.|||+.|..+.|.+|||++|+++.+|.++. ..|.++||.||+++||||.-..+.||++
T Consensus 229 dGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~-------------~~~t~~afg~d~~~lyVt~~~~g~i~~~ 295 (314)
T d1pjxa_ 229 DGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF-------------EKPSNLHFKPQTKTIFVTEHENNAVWKF 295 (314)
T ss_dssp EEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS-------------SCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCC-------------CCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 336555 68999999999999999999999999997632 2468899999999999999999999999
Q ss_pred EEe
Q 019103 318 NLR 320 (346)
Q Consensus 318 ~l~ 320 (346)
++.
T Consensus 296 ~~~ 298 (314)
T d1pjxa_ 296 EWQ 298 (314)
T ss_dssp ECS
T ss_pred ECC
Confidence 873
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=3.2e-12 Score=112.90 Aligned_cols=126 Identities=8% Similarity=0.028 Sum_probs=98.2
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCC----cEEEEeccCCCeeEEEEEEeCCEEEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETG----KVEAINQMEGSYFGEGLTLLGEKLFQVT 166 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tg----kv~~~~~l~~~~FgeGit~~g~~LY~lt 166 (346)
.++++++++|+..+ ++|+|+||| .||+++. ++..|.+|+++++ ++......+..+.+..++.+|+.||+++
T Consensus 26 ~l~~~~~~~~~~~v--~~la~spDG~~L~v~~~--~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~ 101 (333)
T d1ri6a_ 26 ALTLTQVVDVPGQV--QPMVVSPDKRYLYVGVR--PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGS 101 (333)
T ss_dssp CEEEEEEEECSSCC--CCEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEE
T ss_pred CeEEEEEEcCCCCE--eEEEEeCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecc
Confidence 47889999997777 799999999 5888876 6679999987765 2444455666676766777889999999
Q ss_pred eeCCEEEEEECCCCcEEEEEec----CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCc
Q 019103 167 WLQKTGFIYDQNNLNKLEEFTH----QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLK 221 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~----~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~k 221 (346)
+.++.+.+++..+......... ..+.+..+++|++.+++++ +.+.|.++|..+..
T Consensus 102 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 102 YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 161 (333)
T ss_dssp TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred cCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence 9999999998887766665543 1467788999999999977 67788888866543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.52 E-value=7.3e-13 Score=125.36 Aligned_cols=187 Identities=12% Similarity=0.017 Sum_probs=140.0
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEE--EEEecC-CCc
Q 019103 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL--EEFTHQ-MKD 192 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i--~ti~~~-~pe 192 (346)
+.++++.. ++.+|++||++|++++.+++.+..+.+..++++|++||++.. ++.+.++|.+|.+.. .+++.+ .++
T Consensus 32 ~~~~V~~~--~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~~~~~~i~~~~~~~ 108 (426)
T d1hzua2 32 NLFSVTLR--DAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEIKIGIEAR 108 (426)
T ss_dssp GEEEEEET--TTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred eEEEEEEc--CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCceeEEEEEeCCCCCc
Confidence 35678766 677999999999999999999888877777778999998875 689999999988754 455554 357
Q ss_pred eeEEe----eCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCC---eeeeecee---eE--eeCCEEEEEecCCCeEE
Q 019103 193 GWGLA----TDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKG---REVRNLNE---LE--FIKGEVWANVWQTDCIA 259 (346)
Q Consensus 193 GwGLt----~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G---~pv~~lNE---LE--~~~G~LyaNv~~sn~I~ 259 (346)
++.++ |||++||+++ ..+.+.++|.++.+++..+...... ..+..-.. +. ..+.++|+++..++.|.
T Consensus 109 ~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~ 188 (426)
T d1hzua2 109 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL 188 (426)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred ceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 77765 5999999987 5889999999999998887764311 11111111 11 11236778888888888
Q ss_pred EEeCCCCeEE--EEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 260 RISHEDGVVL--GWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 260 vID~~TG~Vv--~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+++..+++.+ ..++ .+..+.+++++|+++++|+++.....+..+.+
T Consensus 189 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~ 236 (426)
T d1hzua2 189 LVNYKDIDNLTVTSIG--------------AAPFLADGGWDSSHRYFMTAANNSNKVAVIDS 236 (426)
T ss_dssp EEECSSSSSCEEEEEE--------------CCSSEEEEEECTTSCEEEEEETTCSEEEEEET
T ss_pred EEEeccccceeeEEec--------------cCCccEeeeECCCCcEEEeeeecccceeeeec
Confidence 8888777633 3332 23468999999999999999999988877654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.51 E-value=2.8e-12 Score=123.35 Aligned_cols=174 Identities=8% Similarity=-0.040 Sum_probs=134.6
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCc--EEEEeccCCCeeEEEEEE----eCCEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGK--VEAINQMEGSYFGEGLTL----LGEKLFQ 164 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgk--v~~~~~l~~~~FgeGit~----~g~~LY~ 164 (346)
+.+++++++....+ +++.|+|||+ ||++ +. +..|++||++|++ ...+++....+++..+++ +|++||+
T Consensus 51 t~~v~~~~~~g~~~--~~v~fSpDG~~l~~~-s~--dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~v 125 (432)
T d1qksa2 51 TYEIKTVLDTGYAV--HISRLSASGRYLFVI-GR--DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA 125 (432)
T ss_dssp TCCEEEEEECSSCE--EEEEECTTSCEEEEE-ET--TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred CCcEEEEEeCCCCe--eEEEECCCCCEEEEE-cC--CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEE
Confidence 78899999986544 7999999996 6654 43 4599999999876 667777777766654443 6889999
Q ss_pred EEeeCCEEEEEECCCCcEEEEEecC-----------CCce--eEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEE--EEEe
Q 019103 165 VTWLQKTGFIYDQNNLNKLEEFTHQ-----------MKDG--WGLATDGKVLFGSD-GSSMLYQIDPQTLKVIR--KDIV 228 (346)
Q Consensus 165 ltw~~~~v~V~D~~tl~~i~ti~~~-----------~peG--wGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~--~I~V 228 (346)
....++.+.++|.++++.+++++.. .+.. ...++||+.++++. .+++|.++|..+.+... +|.+
T Consensus 126 s~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~ 205 (432)
T d1qksa2 126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA 205 (432)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred EcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc
Confidence 9999999999999999999987631 1222 34578999999976 58899999999887554 4444
Q ss_pred ccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCc
Q 019103 229 RYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPN 276 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~ 276 (346)
+. .| ..+.+. +.++|+....++.|.+||.+++++++.++...
T Consensus 206 g~--~~----~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~ 249 (432)
T d1qksa2 206 ER--FL----HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 249 (432)
T ss_dssp CS--SE----EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred cC--cc----ccceECCCCCEEEEeccccceEEEeecccceEEEEeccCc
Confidence 43 23 234444 44799999999999999999999999998844
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.50 E-value=2.2e-12 Score=113.61 Aligned_cols=209 Identities=12% Similarity=0.110 Sum_probs=139.5
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCC-------eeEEEEEEeCCEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGS-------YFGEGLTLLGEKLF 163 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~-------~FgeGit~~g~~LY 163 (346)
+-+++++++.+......+++++||| .||+++. ..+.|.+||+.+++++........ +.+..++.+|+++|
T Consensus 27 t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~--~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~ 104 (346)
T d1jmxb_ 27 SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 104 (346)
T ss_dssp TTEEEEEEECSSCCSSCEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEE
T ss_pred CCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC--CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEE
Confidence 5688888764333333799999998 5888876 457999999999999998876532 33444555788999
Q ss_pred EEEe-----------eCCEEEEEECCCCcEEEEEecC-CCceeE--EeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEec
Q 019103 164 QVTW-----------LQKTGFIYDQNNLNKLEEFTHQ-MKDGWG--LATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 164 ~ltw-----------~~~~v~V~D~~tl~~i~ti~~~-~peGwG--Lt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~ 229 (346)
++.. .+..+.++|..+++..+.+... .|.+.. ...++.++|+++ +.+.++|+.+++.+.++.++
T Consensus 105 v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 182 (346)
T d1jmxb_ 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLR 182 (346)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECST
T ss_pred EEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC--CcceEEEccCCCEEEEEecC
Confidence 9864 3678899999998887776542 233322 344666777775 56889999999999888764
Q ss_pred cCCeeee---------ec------------------------------------------eeeEe--eCCEEEEE-----
Q 019103 230 YKGREVR---------NL------------------------------------------NELEF--IKGEVWAN----- 251 (346)
Q Consensus 230 ~~G~pv~---------~l------------------------------------------NELE~--~~G~LyaN----- 251 (346)
...+... .. ..... ....++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (346)
T d1jmxb_ 183 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK 262 (346)
T ss_dssp TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS
T ss_pred CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCC
Confidence 3210000 00 00000 00111111
Q ss_pred -----ecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 252 -----VWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 252 -----v~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
....+.|.++|+++++++..++.. ..++++||+|||+++||+|.. +.|.-..+
T Consensus 263 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~~--------------~~~~~va~s~DG~~l~v~~~d-~~v~v~D~ 320 (346)
T d1jmxb_ 263 DPNQIYGVLNRLAKYDLKQRKLIKAANLD--------------HTYYCVAFDKKGDKLYLGGTF-NDLAVFNP 320 (346)
T ss_dssp CTTEEEEEESEEEEEETTTTEEEEEEECS--------------SCCCEEEECSSSSCEEEESBS-SEEEEEET
T ss_pred CCEEEEecCCeEEEEECCCCcEEEEEcCC--------------CCEEEEEEcCCCCEEEEEeCC-CcEEEEEC
Confidence 122467889999999988888652 136899999999999999864 56555443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.49 E-value=1.5e-11 Score=111.45 Aligned_cols=208 Identities=7% Similarity=-0.064 Sum_probs=145.6
Q ss_pred eeEEEEEEecCCCCcceeEEEecCC-EEEEEcCCC-------CCCeEEEEECCCCcEEEEeccCCC--------eeEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLY-------GRSSVRRVALETGKVEAINQMEGS--------YFGEGL 155 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGly-------g~s~V~~iDl~Tgkv~~~~~l~~~--------~FgeGi 155 (346)
+-+++.+++.... .+++|+||| +||+++... ..+.|.+||+.+++++..+..+.. +.+..+
T Consensus 56 tg~~~~~~~~~~~---~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (373)
T d2madh_ 56 SGSILGHVNGGFL---PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CCCEEEEEeCCCC---ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEE
Confidence 5678888876433 489999999 577775321 235799999999999988866532 234556
Q ss_pred EEeCCEEEEEEeeC-CEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccC--
Q 019103 156 TLLGEKLFQVTWLQ-KTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYK-- 231 (346)
Q Consensus 156 t~~g~~LY~ltw~~-~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~-- 231 (346)
+.+++.+|+..|.. +.+.++|..+.+....... +.+..+++||+.+|++. +++++.++|..+.+..........
T Consensus 133 s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 210 (373)
T d2madh_ 133 TPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS--PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA 210 (373)
T ss_pred EeCCCcEEEEEEcCCCceEEeeccCCeEEEEecc--ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecccc
Confidence 67889999998874 6788899999998888875 57889999999999987 688999999988877665433210
Q ss_pred -CeeeeeceeeEee------------------------------------------------------C-CEE-------
Q 019103 232 -GREVRNLNELEFI------------------------------------------------------K-GEV------- 248 (346)
Q Consensus 232 -G~pv~~lNELE~~------------------------------------------------------~-G~L------- 248 (346)
..+.. ..+... + +++
T Consensus 211 ~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 288 (373)
T d2madh_ 211 AQNLLT--QPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred Ccccee--eeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCC
Confidence 00000 000000 0 112
Q ss_pred --EEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE-EEEecCCCCcEEEEEEe
Q 019103 249 --WANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR-IFVTGKLWPKLYEINLR 320 (346)
Q Consensus 249 --yaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~-LfVTGK~Wp~l~ev~l~ 320 (346)
++.....+.|.++|..+|+++..+.. +..++++||+|||++ ||+|+.....|+-+++.
T Consensus 289 ~~~~~~~~~~~v~~~d~~t~~~~~~~~~--------------~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 289 SAWKLHAAAKEVTSVTGLVGQTSSQISL--------------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred ceEEeecCCCeEEEEECCCCcEEEEecC--------------CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence 22333445677777777777777743 224689999999986 68999999999888763
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.48 E-value=9.5e-12 Score=115.32 Aligned_cols=201 Identities=11% Similarity=0.136 Sum_probs=136.8
Q ss_pred ceeEEEecCCEEEEEcC--CCCCCeEEEEECCCCcEEEEec-cCCCeeEEEEEEe-CCEEEEEEeeC------CEEEEEE
Q 019103 107 TQGLLYAENDTLFESTG--LYGRSSVRRVALETGKVEAINQ-MEGSYFGEGLTLL-GEKLFQVTWLQ------KTGFIYD 176 (346)
Q Consensus 107 TqGL~~~~d~~LyeStG--lyg~s~V~~iDl~Tgkv~~~~~-l~~~~FgeGit~~-g~~LY~ltw~~------~~v~V~D 176 (346)
..||++++||+||++.. ......|..+|..++++..... .......-+++.+ .+++|+.+... +.++.+|
T Consensus 84 p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~ 163 (319)
T d2dg1a1 84 PAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVS 163 (319)
T ss_dssp EEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEEC
T ss_pred eeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEe
Confidence 36999999999998742 2235678999999988766553 2333334455664 36799998653 4588898
Q ss_pred CCCCcEEEEE-ecCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCC-CcEEE----EEEecc--CCeeeeeceeeEee-CC
Q 019103 177 QNNLNKLEEF-THQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQT-LKVIR----KDIVRY--KGREVRNLNELEFI-KG 246 (346)
Q Consensus 177 ~~tl~~i~ti-~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T-~kvi~----~I~V~~--~G~pv~~lNELE~~-~G 246 (346)
++......-. ....|.|.++++|+++||++| ..++|+.+|... ..... ...... .+.|- -|.++ +|
T Consensus 164 ~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~Pd----Gl~vD~~G 239 (319)
T d2dg1a1 164 PDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPD----SCCIDSDD 239 (319)
T ss_dssp TTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEE----EEEEBTTC
T ss_pred cccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCcccee----eeeEcCCC
Confidence 7654332212 233689999999999999999 588999998532 22211 111111 12232 26555 68
Q ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec-----CCCCcEEEEEE
Q 019103 247 EVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG-----KLWPKLYEINL 319 (346)
Q Consensus 247 ~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG-----K~Wp~l~ev~l 319 (346)
.|||+.|..+.|.+||| +|+++++|.++.-... .......+|+.++++++|+|- ..-..||.|+.
T Consensus 240 ~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~-------~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 240 NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEG-------HMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGT-------CSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCC-------cCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 99999999999999998 6999999988532110 112345689999999999983 34467899876
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=2e-12 Score=115.89 Aligned_cols=188 Identities=12% Similarity=0.111 Sum_probs=130.0
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
..|++++++|+||++.. +...+.+++..+++.+....--.. +.|++++. +.||+++..++.+.+++.........
T Consensus 59 p~gvav~~~g~i~v~d~--~~~~i~~~~~~~~~~~~~~~~~~~--p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~ 134 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDF--NNRVVTLAAGSNNQTVLPFDGLNY--PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL 134 (260)
T ss_dssp CCCEEECTTCCEEEEET--TTEEEEECTTCSCCEECCCCSCCS--EEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEEC
T ss_pred ceEEEEcCCCCEEEeee--eeceeeeeeeccceeeeeeeeeee--cccccccccceeEeeccccccccccccccceeeee
Confidence 37999999999999865 555666666555655433322233 46677754 57999999999999999876544332
Q ss_pred Eec--CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEE
Q 019103 186 FTH--QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARI 261 (346)
Q Consensus 186 i~~--~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vI 261 (346)
... ..|.|..++++|+ +|++| +.++|..+|+++.... .+....-+.| +.|.+. +|.||++.|..+.|.+|
T Consensus 135 ~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~p----~gi~~d~~g~l~vsd~~~~~i~~~ 208 (260)
T d1rwia_ 135 PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQV-VLPFTDITAP----WGIAVDEAGTVYVTEHNTNQVVKL 208 (260)
T ss_dssp CCCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSE----EEEEECTTCCEEEEETTTTEEEEE
T ss_pred eecccCCcceeeecCCCC-Eeeeccccccccccccccceee-eeeccccCCC----ccceeeeeeeeeeeecCCCEEEEE
Confidence 222 2467777878776 78887 5789999998865432 2222222334 347665 68999999999999999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
++..+.. ..+.. .....|.|||+++++ .||||...-++|.++.
T Consensus 209 ~~~~~~~-~~~~~------------~~~~~P~~i~~d~~g-~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 209 LAGSTTS-TVLPF------------TGLNTPLAVAVDSDR-TVYVADRGNDRVVKLT 251 (260)
T ss_dssp CTTCSCC-EECCC------------CSCCCEEEEEECTTC-CEEEEEGGGTEEEEEC
T ss_pred eCCCCeE-EEEcc------------CCCCCeEEEEEeCCC-CEEEEECCCCEEEEEe
Confidence 9887642 22211 123468999999986 5899988888888764
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.43 E-value=4.2e-12 Score=117.05 Aligned_cols=115 Identities=8% Similarity=-0.129 Sum_probs=90.7
Q ss_pred ecCC-EEEEE--cCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee---------CCEEEEEECCCC
Q 019103 113 AEND-TLFES--TGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL---------QKTGFIYDQNNL 180 (346)
Q Consensus 113 ~~d~-~LyeS--tGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~---------~~~v~V~D~~tl 180 (346)
.+|+ +.|+. +...|...|.++|.++++++..+..+..+ +..++.+|+.||++++. ++.|.++|+.|+
T Consensus 28 ~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~ 106 (368)
T d1mdah_ 28 GAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred CCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCC
Confidence 3444 34433 33336678999999999999998876544 44455678899999863 567999999999
Q ss_pred cEEEEEecC---------CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEe
Q 019103 181 NKLEEFTHQ---------MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 181 ~~i~ti~~~---------~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V 228 (346)
+++++++.+ .|.+.++++||++||+++ ..+.+.++|+++.++++++.+
T Consensus 107 ~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~ 164 (368)
T d1mdah_ 107 LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS 164 (368)
T ss_dssp CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence 999998732 367788999999999998 478999999999999988776
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.43 E-value=2.1e-11 Score=109.08 Aligned_cols=117 Identities=13% Similarity=-0.035 Sum_probs=93.5
Q ss_pred EecCC-EEEEEcCC--CCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEe---------eCCEEEEEECCC
Q 019103 112 YAEND-TLFESTGL--YGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTW---------LQKTGFIYDQNN 179 (346)
Q Consensus 112 ~~~d~-~LyeStGl--yg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw---------~~~~v~V~D~~t 179 (346)
.+||+ ++|++... ...++|.+||.++|+++.+++.+..+ +..++++|++||+++. .++.+.++|.++
T Consensus 9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t 87 (355)
T d2bbkh_ 9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 87 (355)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred eCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence 45777 68988643 23568999999999999999877655 4556668899999864 367899999999
Q ss_pred CcEEEEEecC---------CCceeEEeeCCCEEEEECC--CCeEEEEeCCCCcEEEEEEec
Q 019103 180 LNKLEEFTHQ---------MKDGWGLATDGKVLFGSDG--SSMLYQIDPQTLKVIRKDIVR 229 (346)
Q Consensus 180 l~~i~ti~~~---------~peGwGLt~Dg~~LyvSdG--s~~l~vIDp~T~kvi~~I~V~ 229 (346)
++.++++..+ .|.+..+++||+++|+.+. ...++++|.+++++++++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (355)
T d2bbkh_ 88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 148 (355)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecC
Confidence 9999998642 3567789999999999763 668999999999998887763
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.41 E-value=1.8e-12 Score=119.55 Aligned_cols=169 Identities=7% Similarity=-0.051 Sum_probs=120.0
Q ss_pred eeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe---------e--------------------------
Q 019103 108 QGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSY---------F-------------------------- 151 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~---------F-------------------------- 151 (346)
.+++|++|| +||+++. +.+.|.+||++++++...++.+... |
T Consensus 127 ~~~a~SpDGk~l~va~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~ 204 (368)
T d1mdah_ 127 HIIGNCASSACLLFFLF--GSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204 (368)
T ss_dssp TSEEECTTSSCEEEEEC--SSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred cceEECCCCCEEEEEeC--CCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeec
Confidence 479999999 5898876 5679999999999998887553210 0
Q ss_pred ------------------EEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecC----CCceeEEeeCCCEEEEEC--
Q 019103 152 ------------------GEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ----MKDGWGLATDGKVLFGSD-- 207 (346)
Q Consensus 152 ------------------geGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~----~peGwGLt~Dg~~LyvSd-- 207 (346)
+.-+...++++|+.+|..+.+.+++..+.......... ..+..++++|++.+|++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~ 284 (368)
T d1mdah_ 205 QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred ccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecC
Confidence 11111123456666666666666666555443333221 246678999999999963
Q ss_pred C-------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC--EEEEEecCCCeEEEEeCCCCeEEEEEECCch
Q 019103 208 G-------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG--EVWANVWQTDCIARISHEDGVVLGWVLLPNL 277 (346)
Q Consensus 208 G-------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G--~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l 277 (346)
+ .++|+++|++|++.++++.++. .+ +.+.+. || .|||+...++.|.++|++||+++++|+++
T Consensus 285 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~--~~----~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g-- 356 (368)
T d1mdah_ 285 HSRSCLAAAENTSSVTASVGQTSGPISNGH--DS----DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD-- 356 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSCCEEECCEEEE--EE----CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--
T ss_pred CCceeecCCceEEEEECCCCcEeEEecCCC--ce----eEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC--
Confidence 2 3579999999999999998764 22 235554 55 48999999999999999999999999662
Q ss_pred hhhhhhccCCCCceeeEEEEe
Q 019103 278 RERLVAAGYNGIDVLNGIAWD 298 (346)
Q Consensus 278 ~~~~~~~~~~~~~vlNGIA~d 298 (346)
..|++|++-
T Consensus 357 ------------~~P~~l~~~ 365 (368)
T d1mdah_ 357 ------------KGPESLSVQ 365 (368)
T ss_dssp ------------SCCCEEECC
T ss_pred ------------CCCCEEEEe
Confidence 257888873
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.40 E-value=2e-12 Score=127.78 Aligned_cols=196 Identities=15% Similarity=0.039 Sum_probs=137.0
Q ss_pred ecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccC--CCeeEEEEEEeCCEEEEEEeeCCEE-----------------
Q 019103 113 AENDT-LFESTGLYGRSSVRRVALETGKVEAINQME--GSYFGEGLTLLGEKLFQVTWLQKTG----------------- 172 (346)
Q Consensus 113 ~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~--~~~FgeGit~~g~~LY~ltw~~~~v----------------- 172 (346)
++||+ ||++.- +.++|.+||++|+|+.+.+.++ ..+.|..++.+|+++|++.+.++.+
T Consensus 80 tpDGr~lfV~d~--~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~ 157 (441)
T d1qnia2 80 RYDGKYLFINDK--ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM 157 (441)
T ss_dssp EEEEEEEEEEET--TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred cCCCCEEEEEcC--CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccce
Confidence 46785 899866 7789999999999999988775 4444444444789999998887766
Q ss_pred -EEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CC---------------------------------------C
Q 019103 173 -FIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GS---------------------------------------S 210 (346)
Q Consensus 173 -~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs---------------------------------------~ 210 (346)
.++|+++.++..+++++ .+.+.++++||+++|+++ .+ +
T Consensus 158 ~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~ 237 (441)
T d1qnia2 158 FTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS 237 (441)
T ss_dssp EEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC
Confidence 56999999999999986 789999999999999975 33 2
Q ss_pred eEEEEe-CCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEE--EEEECCchhhhhhhccCC
Q 019103 211 MLYQID-PQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVL--GWVLLPNLRERLVAAGYN 287 (346)
Q Consensus 211 ~l~vID-p~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv--~~I~l~~l~~~~~~~~~~ 287 (346)
.+.++| ..+.+++++|+++.. |.+ + .+..++.++||+++.+++|+|||.++.+.. +.++ .+..+. ....
T Consensus 238 ~v~vvd~~~~~~v~~~IPvgks--PhG-v-~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~---~~~~~~-~~~~ 309 (441)
T d1qnia2 238 KVPVVDGRGESEFTRYIPVPKN--PHG-L-NTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIE---LRDTIV-AEPE 309 (441)
T ss_dssp CCCEEECSSSCSSEEEECCBSS--CCC-E-EECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSC---GGGGEE-ECCB
T ss_pred CcEEEEcccCCceEEEEeCCCC--ccC-c-eECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCC---cceEEE-eecc
Confidence 333444 566778888888763 433 0 133345589999999999999998763310 0010 000000 0011
Q ss_pred CCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 288 GIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 288 ~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
.+--|..-+||+++ ..|.+.-....+.+-.+
T Consensus 310 ~glgplh~~fd~~g-~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 310 LGLGPLHTTFDGRG-NAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp CCSCEEEEEECSSS-EEEEEETTTTEEEEEEH
T ss_pred cccCcccceecCCc-eEEEcccccceEEEecc
Confidence 23345667999876 68988777777766555
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=2.2e-11 Score=107.46 Aligned_cols=192 Identities=8% Similarity=-0.024 Sum_probs=138.7
Q ss_pred EEEEEcCCCCCCeEEEEECCCC---cEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCC----cEEEEEecC
Q 019103 117 TLFESTGLYGRSSVRRVALETG---KVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNL----NKLEEFTHQ 189 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tg---kv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl----~~i~ti~~~ 189 (346)
.+|+++. ++++|++||+++. ++++.+..+..+.+..++++|+.||++...++.+.++|..+. +.....+.+
T Consensus 5 ~v~v~~~--~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 5 TVYIASP--ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEEG--GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEECC--CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence 5899987 6779999998754 455666778888887788899999999999999888775433 344455554
Q ss_pred -CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCe
Q 019103 190 -MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGV 267 (346)
Q Consensus 190 -~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~ 267 (346)
.|.+.++++||++||+++ ++..+.+++.+.......+.....+...+.+ .+...+.++|+.....+.|.+++..+..
T Consensus 83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v-~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSA-NISPDNRTLWVPALKQDRICLFTVSDDG 161 (333)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCC-EECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEE-EeeecceeeeccccccceeeEEEeccCC
Confidence 578888999999999987 5789999988887777666665432221111 1223345799999889999999988876
Q ss_pred EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 268 VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 268 Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
........... ...+..|.+||++++++.+|+++..-.......
T Consensus 162 ~~~~~~~~~~~-------~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~ 205 (333)
T d1ri6a_ 162 HLVAQDPAEVT-------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 205 (333)
T ss_dssp CEEEEEEEEEE-------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cceeeeceeee-------eecCCCccEEEEeccceeEEeeccccCceEEEe
Confidence 55444321111 134567899999999999999987766654444
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.38 E-value=2.2e-11 Score=106.67 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=105.9
Q ss_pred EEEEEeeCCEEEEEECCCCcEEEEEecC----CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeee
Q 019103 162 LFQVTWLQKTGFIYDQNNLNKLEEFTHQ----MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVR 236 (346)
Q Consensus 162 LY~ltw~~~~v~V~D~~tl~~i~ti~~~----~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~ 236 (346)
.+++.-.+++|.|+|.++++++++++.+ .|.+..++|||++||+++ +++.|+++|.+|++++.++..........
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~ 82 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence 4455567899999999999999999863 356888999999999986 58899999999999999999865433333
Q ss_pred eceeeEee--CCEEEEEec-----------CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCE
Q 019103 237 NLNELEFI--KGEVWANVW-----------QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNR 303 (346)
Q Consensus 237 ~lNELE~~--~G~LyaNv~-----------~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 303 (346)
..+.+.+. +.++|+... ....+.++|..+++++..+... ..+++++++|++++
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------------~~~~~~~~s~dg~~ 148 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--------------RQITMLAWARDGSK 148 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--------------SSCCCEEECTTSSC
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc--------------CCceEEEEcCCCCE
Confidence 33444444 447876653 4578999999999999999652 13588999999999
Q ss_pred EEEecC
Q 019103 304 IFVTGK 309 (346)
Q Consensus 304 LfVTGK 309 (346)
+|+++.
T Consensus 149 l~~~~~ 154 (337)
T d1pbyb_ 149 LYGLGR 154 (337)
T ss_dssp EEEESS
T ss_pred EEEEcC
Confidence 999974
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.34 E-value=1.7e-10 Score=105.10 Aligned_cols=187 Identities=16% Similarity=0.234 Sum_probs=131.3
Q ss_pred cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECC--CCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEEC
Q 019103 101 HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALE--TGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 101 hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~--Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~ 177 (346)
.+..+ .||++++||.||++.. +.+.+.+++.. .++.......+...+..|++.+ ++++|+.+...+.++.+|.
T Consensus 66 ~~~~~--~gla~~~dG~l~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~ 141 (302)
T d2p4oa1 66 VEGKV--SGLAFTSNGDLVATGW--NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 141 (302)
T ss_dssp CSSEE--EEEEECTTSCEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred CCCCc--ceEEEcCCCCeEEEec--CCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeec
Confidence 43444 6999999999999864 55677777765 4556555566666667888885 5799999999999999999
Q ss_pred CCCcEEEEEe---------cC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEec-cCCeeeeeceeeEee-
Q 019103 178 NNLNKLEEFT---------HQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR-YKGREVRNLNELEFI- 244 (346)
Q Consensus 178 ~tl~~i~ti~---------~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~-~~G~pv~~lNELE~~- 244 (346)
++....--.. .. ...+.|++.|++.+|+++ +.++|+.+|...........+. ..+.| .-|.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p----dgia~d~ 217 (302)
T d2p4oa1 142 VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI----DDFAFDV 217 (302)
T ss_dssp TTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC----SSEEEBT
T ss_pred cCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEeccccccccccccccccCCCCC----cceEECC
Confidence 8765332111 11 346678999999999998 5889999997665443332221 11222 235555
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEE---eCCCCEEEEe
Q 019103 245 KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAW---DSNRNRIFVT 307 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~---d~~~~~LfVT 307 (346)
+|.||++.+..+.|.+|+|+ |++...+.. . ....-|.++|| .+|+++||||
T Consensus 218 dG~l~va~~~~~~V~~i~p~-G~~~~~~~~---~--------~~~~~pt~vafg~~~~D~~~Lyvt 271 (302)
T d2p4oa1 218 EGNLYGATHIYNSVVRIAPD-RSTTIIAQA---E--------QGVIGSTAVAFGQTEGDCTAIYVV 271 (302)
T ss_dssp TCCEEEECBTTCCEEEECTT-CCEEEEECG---G--------GTCTTEEEEEECCSTTTTTEEEEE
T ss_pred CCCEEEEEcCCCcEEEECCC-CCEEEEEec---C--------CCCCCceEEEEcCCCCCCCEEEEE
Confidence 78999999999999999997 454444422 1 11235789999 6788999997
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.34 E-value=1.9e-10 Score=105.75 Aligned_cols=199 Identities=15% Similarity=0.175 Sum_probs=134.4
Q ss_pred EEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC----CeeEEEEEEeCCEEEEEEeeC---
Q 019103 97 NEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG----SYFGEGLTLLGEKLFQVTWLQ--- 169 (346)
Q Consensus 97 ~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~----~~FgeGit~~g~~LY~ltw~~--- 169 (346)
+.++.+..+ -++++.++|.|++++. +.|.++|+++|++..-..... ..+--+..-..+++|+.+...
T Consensus 53 ~~~~~~~~~--~~i~~~~dg~l~va~~----~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~ 126 (295)
T d2ghsa1 53 TVHALPFMG--SALAKISDSKQLIASD----DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAE 126 (295)
T ss_dssp EEEECSSCE--EEEEEEETTEEEEEET----TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCC
T ss_pred EEEECCCCc--EEEEEecCCCEEEEEe----CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccccc
Confidence 445554444 5888988999999864 479999999999766554422 122333222357899988643
Q ss_pred -CEEEEEECCCCcEEEEEe-cCCCceeEEeeCCCEEEEEC-CCCeEEEEeC--CCCcEE--EEEEe---ccCCeeeeece
Q 019103 170 -KTGFIYDQNNLNKLEEFT-HQMKDGWGLATDGKVLFGSD-GSSMLYQIDP--QTLKVI--RKDIV---RYKGREVRNLN 239 (346)
Q Consensus 170 -~~v~V~D~~tl~~i~ti~-~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp--~T~kvi--~~I~V---~~~G~pv~~lN 239 (346)
+...+|...+.+....+. ...+.|.++++|++.+|++| .++.|+.+|. +..... ..+-+ +..|.|-.
T Consensus 127 ~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG--- 203 (295)
T d2ghsa1 127 TGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG--- 203 (295)
T ss_dssp TTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE---
T ss_pred ccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccc---
Confidence 344555544554444333 23578999999999999999 5889988764 332221 12222 22345543
Q ss_pred eeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEe-CCCCEEEEec-C-------
Q 019103 240 ELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWD-SNRNRIFVTG-K------- 309 (346)
Q Consensus 240 ELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d-~~~~~LfVTG-K------- 309 (346)
+..+ +|.||++.|..+.|.++|| +|+++..|.++. ..+..+||- ++.++||||- .
T Consensus 204 -~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~-------------~~~T~~~FGG~d~~~LyvTta~~~~~~~~ 268 (295)
T d2ghsa1 204 -SVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG-------------KQTTCPAFIGPDASRLLVTSAREHLDDDA 268 (295)
T ss_dssp -EEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC-------------SBEEEEEEESTTSCEEEEEEBCTTCCHHH
T ss_pred -eEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCC-------------CceEEEEEeCCCCCEEEEEECCcCCChhH
Confidence 5444 6899999999999999998 699999998732 135668886 6789999983 2
Q ss_pred -----CCCcEEEEEE
Q 019103 310 -----LWPKLYEINL 319 (346)
Q Consensus 310 -----~Wp~l~ev~l 319 (346)
+.+.||++++
T Consensus 269 ~~~~p~~G~l~~~~~ 283 (295)
T d2ghsa1 269 ITANPQHGLTFELGI 283 (295)
T ss_dssp HHHCTTTTCEEECSS
T ss_pred hccCCCCceEEEEcC
Confidence 3568999875
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.33 E-value=3.5e-10 Score=106.54 Aligned_cols=174 Identities=7% Similarity=-0.046 Sum_probs=128.4
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEE--EEeccCCCeeEEEEEE----eCCEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVE--AINQMEGSYFGEGLTL----LGEKLFQ 164 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~--~~~~l~~~~FgeGit~----~g~~LY~ 164 (346)
+.++++++++...+ .|++|+|||+ ||.+ + .+..|++||++|++.. .+++....+.+..+++ +|++||+
T Consensus 51 t~~~~~~l~~g~~~--~~vafSPDGk~l~~~-~--~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v 125 (426)
T d1hzua2 51 SKKIVKVIDTGYAV--HISRMSASGRYLLVI-G--RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIA 125 (426)
T ss_dssp TCSEEEEEECCSSE--EEEEECTTSCEEEEE-E--TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEE
T ss_pred CCcEEEEEeCCCCe--eEEEECCCCCEEEEE-e--CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEE
Confidence 67899999986554 7999999996 5554 5 2459999999999844 4455555544433333 5789999
Q ss_pred EEeeCCEEEEEECCCCcEEEEEecC---------CCce----eEEeeCCCEEEEEC-CCCeEEEEeCCCCcE--EEEEEe
Q 019103 165 VTWLQKTGFIYDQNNLNKLEEFTHQ---------MKDG----WGLATDGKVLFGSD-GSSMLYQIDPQTLKV--IRKDIV 228 (346)
Q Consensus 165 ltw~~~~v~V~D~~tl~~i~ti~~~---------~peG----wGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kv--i~~I~V 228 (346)
+.+.++.+.++|.++++.+..+... .+.| ...++|+..+++++ +++.+.+++..+.+. +..+..
T Consensus 126 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 205 (426)
T d1hzua2 126 GAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA 205 (426)
T ss_dssp EEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC
T ss_pred eecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc
Confidence 9999999999999999988776521 0122 33567889998887 588999998777654 344444
Q ss_pred ccCCeeeeeceeeEee--CCEEEEEecCCCeEEEEeCCCCeEEEEEECCc
Q 019103 229 RYKGREVRNLNELEFI--KGEVWANVWQTDCIARISHEDGVVLGWVLLPN 276 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~--~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~ 276 (346)
+. .+ ..+.+. +.++|++....+.+.++|..++++++.++...
T Consensus 206 ~~--~~----~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (426)
T d1hzua2 206 AP--FL----ADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249 (426)
T ss_dssp CS--SE----EEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSS
T ss_pred CC--cc----EeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCC
Confidence 43 22 234444 55899999999999999999999999998743
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.33 E-value=3e-10 Score=102.64 Aligned_cols=159 Identities=4% Similarity=-0.143 Sum_probs=123.1
Q ss_pred eeEEEecCC-EEEEEcCCC--CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEee---------CCEEEEE
Q 019103 108 QGLLYAEND-TLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWL---------QKTGFIY 175 (346)
Q Consensus 108 qGL~~~~d~-~LyeStGly--g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~---------~~~v~V~ 175 (346)
..++++||| ++|++...+ +...|.++|.+||+++.+++.+..+ +..++++|++||++... .+.+.++
T Consensus 24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~ 102 (373)
T d2madh_ 24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc-cEEEcCCCCEEEEEeecCCcccccccceEEEEE
Confidence 577788988 688875432 3468999999999999998766544 55677789999998753 4789999
Q ss_pred ECCCCcEEEEEecC---------CCceeEEeeCCCEEEEEC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee
Q 019103 176 DQNNLNKLEEFTHQ---------MKDGWGLATDGKVLFGSD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI 244 (346)
Q Consensus 176 D~~tl~~i~ti~~~---------~peGwGLt~Dg~~LyvSd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~ 244 (346)
|+.+++++.++..+ .+.+..+++|++.+|+.+ .++.+.++|..+.++........ .+ .+...
T Consensus 103 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~~s~~ 175 (373)
T d2madh_ 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPT---CY----HIHPG 175 (373)
T ss_pred ECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccce---eE----EEecC
Confidence 99999999988642 346678999999988854 57899999999988877766532 11 12233
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEEC
Q 019103 245 KGEVWANVWQTDCIARISHEDGVVLGWVLL 274 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l 274 (346)
+..+|+....++.+.++|.+++++......
T Consensus 176 g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 176 APSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred CCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence 457899888999999999999998877743
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.33 E-value=3.4e-10 Score=102.05 Aligned_cols=183 Identities=12% Similarity=0.120 Sum_probs=128.0
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-----CCeeEEEEEEeC---CEEEEEEeeCCEEEEEEC
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-----GSYFGEGLTLLG---EKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-----~~~FgeGit~~g---~~LY~ltw~~~~v~V~D~ 177 (346)
+..|++++++|.||++.. +..+|++||.+ |+.+...... ....+.+++... ..++...+.++.+.++|.
T Consensus 24 ~P~gvavd~dg~i~VaD~--~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADT--NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp CEEEEEECTTCCEEEEEG--GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred CccEEEEcCCCCEEEEEC--CCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence 347999999999999965 67899999976 7777766321 223456777653 345555677788888885
Q ss_pred CCCcEEEEEecC---CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEe
Q 019103 178 NNLNKLEEFTHQ---MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANV 252 (346)
Q Consensus 178 ~tl~~i~ti~~~---~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv 252 (346)
+.+...++... .|.+.+++++|+ +|++| +...+.++|+. .+.+.++....+ ...++.+.+. +|.+|+..
T Consensus 101 -~g~~~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~---~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 101 -YGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKH---LEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp -TSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTT---CSSEEEEEECSSSEEEEEE
T ss_pred -cccceeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-Cceeeccccccc---ccccceeeeccceeEEeee
Confidence 67888888653 345555555665 56655 67899999975 677776654332 2223334444 57999999
Q ss_pred cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 253 WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
+..+.|.+.|+ +|+.+.++... .....|.|||+|++++ +||+...
T Consensus 175 ~~~~~V~~~d~-~G~~~~~~g~~-----------g~~~~P~giavD~~G~-i~Vad~~ 219 (279)
T d1q7fa_ 175 NRAHCVKVFNY-EGQYLRQIGGE-----------GITNYPIGVGINSNGE-ILIADNH 219 (279)
T ss_dssp GGGTEEEEEET-TCCEEEEESCT-----------TTSCSEEEEEECTTCC-EEEEECS
T ss_pred ccccceeeeec-CCceeeeeccc-----------ccccCCcccccccCCe-EEEEECC
Confidence 99999999997 57777777321 1234689999999986 9999653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.31 E-value=3e-11 Score=108.02 Aligned_cols=190 Identities=13% Similarity=0.188 Sum_probs=126.9
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
.|++++++|.+|++... ...++.+++..+.. ......+....++|++++ +++||+++..++.+.+++..+.+.+..+
T Consensus 17 ~~vavd~dG~i~v~~~~-~~~~i~~~~~~~~~-~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~ 94 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSEG-MYGRVVKLATGSTG-TTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 94 (260)
T ss_dssp EEEEECTTCCEEEEECS-SSCEEEEEC----C-EEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CEEEEcCCCCEEEEEcC-CCCEEEEEcCCCce-EEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence 79999999999987541 33578887766543 223333333335677875 4679999999888888887777766555
Q ss_pred ec-CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeC
Q 019103 187 TH-QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISH 263 (346)
Q Consensus 187 ~~-~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~ 263 (346)
.. ..|.|.+++++|+ +|++| +.+.+..+++.+..... ..... +..++.+.+. +|.+|+..+..+.|.++|+
T Consensus 95 ~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~-~~~~~----~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~ 168 (260)
T d1rwia_ 95 DGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTV-LPFTG----LNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 168 (260)
T ss_dssp CSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEE-CCCCS----CCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred eeeeecccccccccce-eEeeccccccccccccccceeee-eeecc----cCCcceeeecCCCCEeeecccccccccccc
Confidence 43 2356666666664 78887 58899999987754322 22211 1122335443 6789999999999999999
Q ss_pred CCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 264 EDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 264 ~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
++....... . .....|+|||+|+++ .|||+.....+++++..
T Consensus 169 ~~~~~~~~~-~------------~~~~~p~gi~~d~~g-~l~vsd~~~~~i~~~~~ 210 (260)
T d1rwia_ 169 ESNNQVVLP-F------------TDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLA 210 (260)
T ss_dssp TTCCEEECC-C------------SSCCSEEEEEECTTC-CEEEEETTTTEEEEECT
T ss_pred ccceeeeee-c------------cccCCCccceeeeee-eeeeeecCCCEEEEEeC
Confidence 876543211 1 123468999999986 58999988899998853
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.30 E-value=1.8e-12 Score=127.79 Aligned_cols=202 Identities=14% Similarity=0.142 Sum_probs=142.8
Q ss_pred CCcceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeC-----------
Q 019103 104 RAFTQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQ----------- 169 (346)
Q Consensus 104 ~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~----------- 169 (346)
-.||.| . .||+ ||+..- ..++|.+||+++.|+.+.+.+|.....+|+.+ +++..|++...+
T Consensus 90 ~S~TdG-t--yDGrylFVNDk--an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~ 164 (459)
T d1fwxa2 90 MSFTEG-K--YDGRFLFMNDK--ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 164 (459)
T ss_dssp EEEETT-E--EEEEEEEEEET--TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred ccccCC-c--cceeEEEEEcC--CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCcc
Confidence 345555 2 3575 888876 77899999999999999888876666688777 578899987555
Q ss_pred --------CEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeece
Q 019103 170 --------KTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLN 239 (346)
Q Consensus 170 --------~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lN 239 (346)
+.+.++|+++.++..++.++ .+++.++++||+++|++. .++....++..+-+....+.|... + .+.
T Consensus 165 l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~--~--rie 240 (459)
T d1fwxa2 165 MEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI--A--EIE 240 (459)
T ss_dssp TTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH--H--HHH
T ss_pred ccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEech--H--HhH
Confidence 44689999999999999996 578999999999999975 344433333334445555655431 1 111
Q ss_pred eeEeeCC-EEEEEecCCCeEEEEeCCCC---eEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 240 ELEFIKG-EVWANVWQTDCIARISHEDG---VVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 240 ELE~~~G-~LyaNv~~sn~I~vID~~TG---~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
+. ..+| +-.+ +-+.+||+.+. +++..|+++ ..|+|+..+|||+.+||+||+.|++.
T Consensus 241 ~a-v~~Gk~~ei-----ngV~VVD~~~~~~~~v~~yIPVp--------------KsPHGV~vSPDGKyi~VaGKLs~tVS 300 (459)
T d1fwxa2 241 KA-IAAGDYQEL-----NGVKVVDGRKEASSLFTRYIPIA--------------NNPHGCNMAPDKKHLCVAGKLSPTVT 300 (459)
T ss_dssp HH-HHHTCSEEE-----TTEEEEECSGG--CSSEEEEEEE--------------SSCCCEEECTTSSEEEEECTTSSBEE
T ss_pred Hh-hhcCCcEEe-----CCceeecccccCCcceeEEEecC--------------CCCCceEECCCCCEEEEeCCcCCcEE
Confidence 11 1122 2222 45788998753 577777652 25899999999999999999999999
Q ss_pred EEEEeeccccccCCCchhH
Q 019103 316 EINLREMKRERKDGFNVDT 334 (346)
Q Consensus 316 ev~l~~~~~~~~~~~~~~~ 334 (346)
-|.+.-++.-++++....+
T Consensus 301 ViD~~Ki~~~~~~~~~~~~ 319 (459)
T d1fwxa2 301 VLDVTRFDAVFYENADPRS 319 (459)
T ss_dssp EEEGGGHHHHHHSCC-GGG
T ss_pred EEEehhhhhhhcccCCccc
Confidence 9998766665555533333
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=3.3e-09 Score=96.37 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=125.1
Q ss_pred EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcE---EEE-Eec--
Q 019103 117 TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNK---LEE-FTH-- 188 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~---i~t-i~~-- 188 (346)
.|+.+.+ +.|+.+|+++.+...-++-... +.|++.+ +++||.++...+.++..+.+.... ..+ +..
T Consensus 3 fLl~s~~----~~I~~~~l~~~~~~~~~~~~~~--~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~ 76 (266)
T d1ijqa1 3 YLFFTNR----HEVRKMTLDRSEYTSLIPNLRN--VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (266)
T ss_dssp EEEEECB----SSEEEEETTSCCCEEEECSCSS--EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC----CeEEEEECCCCcceeeeCCCCc--eEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 3666765 4799999998876554432233 4566664 689999999999999887653321 122 222
Q ss_pred CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe--eCCEEEEEecCCC-eEEEEeCC
Q 019103 189 QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF--IKGEVWANVWQTD-CIARISHE 264 (346)
Q Consensus 189 ~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~--~~G~LyaNv~~sn-~I~vID~~ 264 (346)
..|+|.++.+.++.||.+| +.++|.+.++........+. ....+|.. |.. .+|+||.+.|..+ .|.++++.
T Consensus 77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~~~~P~~----l~vd~~~g~ly~~~~~~~~~I~r~~~d 151 (266)
T d1ijqa1 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRA----IVVDPVHGFMYWTDWGTPAKIKKGGLN 151 (266)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEE----EEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc-CCCCCcce----EEEEcccCeEEEeccCCCcceeEeccC
Confidence 2578888888899999999 58899999988665433333 22234543 544 4799999888654 78899887
Q ss_pred CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 265 DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 265 TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
-..+...+.- + ...|+|||+|+.+++||++...-.+|..+.+.
T Consensus 152 Gs~~~~l~~~-~------------~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~d 194 (266)
T d1ijqa1 152 GVDIYSLVTE-N------------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (266)
T ss_dssp SCCEEEEECS-S------------CSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceeccccc-c------------cceeeEEEeeccccEEEEecCCcCEEEEEECC
Confidence 6554433321 1 23689999999999999999988999988763
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.20 E-value=3e-10 Score=104.97 Aligned_cols=154 Identities=19% Similarity=0.220 Sum_probs=113.5
Q ss_pred CeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEec-C-CCceeEEeeCCCEEEEEC-C----CCeEEEEeCCCC
Q 019103 149 SYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTH-Q-MKDGWGLATDGKVLFGSD-G----SSMLYQIDPQTL 220 (346)
Q Consensus 149 ~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~~-~-~peGwGLt~Dg~~LyvSd-G----s~~l~vIDp~T~ 220 (346)
..+-||++.+. +.||+++..+++|+.+|+++.+....+.. . .|.|.++++||+ ||+++ + ...+..+|+.+.
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCCc
Confidence 33459999964 56999999999999999998876665542 2 467777888885 56654 3 457899999887
Q ss_pred cEEEEEEeccCCeeeeeceeeEee-CCEEEEEecC------CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceee
Q 019103 221 KVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ------TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLN 293 (346)
Q Consensus 221 kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~------sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlN 293 (346)
++...+.-. .+...+|.+.+. +|++|++... ...+.++|++.+.+...++ + ...||
T Consensus 118 ~~~~~~~~~---~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~--~------------~~~pn 180 (319)
T d2dg1a1 118 NLQDIIEDL---STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--N------------ISVAN 180 (319)
T ss_dssp SCEEEECSS---SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--E------------ESSEE
T ss_pred eeeeeccCC---CcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee--c------------cceee
Confidence 765543321 234457887776 7899998654 3459999998776644332 1 12689
Q ss_pred EEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 294 GIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 294 GIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
||||+|++++|||+.-.-.+|+++.+.
T Consensus 181 Gia~s~dg~~lyvad~~~~~I~~~d~~ 207 (319)
T d2dg1a1 181 GIALSTDEKVLWVTETTANRLHRIALE 207 (319)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred eeeeccccceEEEecccCCceEEEEEc
Confidence 999999999999999888999999874
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.19 E-value=4.3e-10 Score=100.34 Aligned_cols=159 Identities=9% Similarity=-0.058 Sum_probs=118.3
Q ss_pred EEeCCEEEEEEee----CCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEECC----------CCeEEEEeCCCCc
Q 019103 156 TLLGEKLFQVTWL----QKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSDG----------SSMLYQIDPQTLK 221 (346)
Q Consensus 156 t~~g~~LY~ltw~----~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSdG----------s~~l~vIDp~T~k 221 (346)
++++.++|+.+-. .+.++|+|.++++++++++.+...+..++|||++||+++. ++.|.++|++|.+
T Consensus 10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~ 89 (355)
T d2bbkh_ 10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 89 (355)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC
Confidence 5688999998753 4579999999999999999875557899999999999752 5689999999999
Q ss_pred EEEEEEeccCCe-ee-eeceeeEee--CCEEEEEecC-CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEE
Q 019103 222 VIRKDIVRYKGR-EV-RNLNELEFI--KGEVWANVWQ-TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIA 296 (346)
Q Consensus 222 vi~~I~V~~~G~-pv-~~lNELE~~--~G~LyaNv~~-sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA 296 (346)
.++++....... .+ ...+.+.+. ++++|+..+. ...+.++|.++++++..+..+....... ..-...++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 163 (355)
T d2bbkh_ 90 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP------TAPDTFFM 163 (355)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE------EETTEEEE
T ss_pred EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEee------cCCcceEE
Confidence 999998864311 11 112234444 4578887765 4578899999999999998744221111 11234589
Q ss_pred EeCCCCEEEEecCCCCcEEEEEEe
Q 019103 297 WDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 297 ~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
+.++++.++++......+..+...
T Consensus 164 ~~~dg~~~~v~~~~~~~~~~~~~~ 187 (355)
T d2bbkh_ 164 HCRDGSLAKVAFGTEGTPEITHTE 187 (355)
T ss_dssp EETTSCEEEEECCSSSCCEEEECC
T ss_pred EcCCCCEEEEEecCCCeEEEEecc
Confidence 999999999998888887766543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=2.6e-09 Score=97.16 Aligned_cols=170 Identities=12% Similarity=0.094 Sum_probs=120.7
Q ss_pred eeEEEec-CCEEEEEcCCCCCCeEEEEECCCCc--EEEEeccCCCeeEEEEEEe--CCEEEEEEeeCC--EEEEEECCCC
Q 019103 108 QGLLYAE-NDTLFESTGLYGRSSVRRVALETGK--VEAINQMEGSYFGEGLTLL--GEKLFQVTWLQK--TGFIYDQNNL 180 (346)
Q Consensus 108 qGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgk--v~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~--~v~V~D~~tl 180 (346)
.||+++. .+.||.+.. +...|.+++++... ++....+ ..| .+++++ ++.+|.++|..+ +++..+.+..
T Consensus 82 ~~iAvD~~~~~lY~~d~--~~~~I~~~~~dg~~~~~l~~~~l-~~p--~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~ 156 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDS--QLDRIEVAKMDGTQRRVLFDTGL-VNP--RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT 156 (263)
T ss_dssp EEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSC-SSE--EEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred cEEEEeccCCeEEEecc--CCCEEEEEecCCceEEEEecccc-cCC--cEEEEecccCcEEEeecCCCCcEEEEecCCCC
Confidence 6999984 568999976 66799999998654 3222222 234 556665 689999988754 5888887543
Q ss_pred cEEEEEe--cCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCe
Q 019103 181 NKLEEFT--HQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDC 257 (346)
Q Consensus 181 ~~i~ti~--~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~ 257 (346)
....-+. ...|.|.++++.+++||.+| ++++|..+|...... ..+.- .-.+|+. |...+++||.+.|..+.
T Consensus 157 ~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~-~~v~~-~~~~P~~----lav~~~~lYwtd~~~~~ 230 (263)
T d1npea_ 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLE-GLQYPFA----VTSYGKNLYYTDWKTNS 230 (263)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEE-CCCSEEE----EEEETTEEEEEETTTTE
T ss_pred CceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe-EEEEC-CCCCcEE----EEEECCEEEEEECCCCE
Confidence 3222222 23467777788899999999 689999999975443 33332 2235654 77889999999999999
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCC
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSN 300 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~ 300 (346)
|.++|..+|+.+..+--. ...-|.||++-+.
T Consensus 231 I~~~~~~~g~~~~~~~~~------------~~~~~~gi~v~~~ 261 (263)
T d1npea_ 231 VIAMDLAISKEMDTFHPH------------KQTRLYGITIALS 261 (263)
T ss_dssp EEEEETTTTEEEEEECCS------------SCCCCCCEEEECS
T ss_pred EEEEECCCCccceEECCC------------CCCCcceEEEeCC
Confidence 999999999988777221 1235789998764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=4.3e-09 Score=95.65 Aligned_cols=188 Identities=14% Similarity=0.065 Sum_probs=132.3
Q ss_pred ceeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcE
Q 019103 107 TQGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNK 182 (346)
Q Consensus 107 TqGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~ 182 (346)
.-||+|+. +++||.+.. +.+.|.+++++.+.....+.-+ ..+ +|++++ ++.||.++...+.+.+++.+....
T Consensus 38 ~~~ld~D~~~~~iywsd~--~~~~I~~~~l~g~~~~~v~~~~~~~p--~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~ 113 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDI--SEPSIGRASLHGGEPTTIIRQDLGSP--EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR 113 (263)
T ss_dssp EEEEEEETTTTEEEEEET--TTTEEEEEESSSCCCEEEECTTCCCE--EEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred EEEEEEEeCCCEEEEEEC--CCCeEEEEEcccCCcEEEEEeccccc--cEEEEeccCCeEEEeccCCCEEEEEecCCceE
Confidence 36899984 468999976 6679999999877654444322 244 567775 899999999999999999875432
Q ss_pred EEEEec--CCCceeEEeeCCCEEEEEC-CC--CeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee--CCEEEEEecCC
Q 019103 183 LEEFTH--QMKDGWGLATDGKVLFGSD-GS--SMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI--KGEVWANVWQT 255 (346)
Q Consensus 183 i~ti~~--~~peGwGLt~Dg~~LyvSd-Gs--~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~--~G~LyaNv~~s 255 (346)
..-+.. ..|.+.++.|.+..||.++ |. ..|+..+....... .+.-..-+.| +.|.++ +++||.....+
T Consensus 114 ~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~-~i~~~~~~~P----~glaiD~~~~~lYw~d~~~ 188 (263)
T d1npea_ 114 RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR-ILAQDNLGLP----NGLTFDAFSSQLCWVDAGT 188 (263)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE-EEECTTCSCE----EEEEEETTTTEEEEEETTT
T ss_pred EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce-eeeeeccccc----ceEEEeecCcEEEEEeCCC
Confidence 222222 2467777888899999998 43 35888887654332 2222222334 445554 78999998889
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+.|.++|...+.+...+. ++ .-|.|||++ +++||+|.-.-.+|+++.+
T Consensus 189 ~~I~~~~~~g~~~~~v~~--~~------------~~P~~lav~--~~~lYwtd~~~~~I~~~~~ 236 (263)
T d1npea_ 189 HRAECLNPAQPGRRKVLE--GL------------QYPFAVTSY--GKNLYYTDWKTNSVIAMDL 236 (263)
T ss_dssp TEEEEEETTEEEEEEEEE--CC------------CSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred CEEEEEECCCCCeEEEEC--CC------------CCcEEEEEE--CCEEEEEECCCCEEEEEEC
Confidence 999999998776644331 11 247899997 6799999888889999876
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.16 E-value=5.2e-10 Score=103.59 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=114.3
Q ss_pred eeEEEEEEeC-CEEEEEEee-------CCEEEEEECCCCcEEEEEe--c----CCCceeEEeeCCCEEEEECCCCeEEEE
Q 019103 150 YFGEGLTLLG-EKLFQVTWL-------QKTGFIYDQNNLNKLEEFT--H----QMKDGWGLATDGKVLFGSDGSSMLYQI 215 (346)
Q Consensus 150 ~FgeGit~~g-~~LY~ltw~-------~~~v~V~D~~tl~~i~ti~--~----~~peGwGLt~Dg~~LyvSdGs~~l~vI 215 (346)
+++||++.+. +.||+++.. +++++.+|+++.+...... . +.|.|..+.+||+.||++|..+.|..+
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 3469999974 679987543 5789999999876544321 1 146788899999999999998899999
Q ss_pred eCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecC---------------CCeEEEEeCCCCeEEEEEECCchhh
Q 019103 216 DPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ---------------TDCIARISHEDGVVLGWVLLPNLRE 279 (346)
Q Consensus 216 Dp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~---------------sn~I~vID~~TG~Vv~~I~l~~l~~ 279 (346)
|+++.... .+....+|.++..+|.+.+. +|.||++... ...|.++|++ |++..... +
T Consensus 98 ~~~g~~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~--~--- 170 (314)
T d1pjxa_ 98 QTDGTFEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--A--- 170 (314)
T ss_dssp ETTSCEEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--E---
T ss_pred eCCCcEEE-EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC--C---
Confidence 99865422 22223457788788999887 5899998632 2368889874 55544331 1
Q ss_pred hhhhccCCCCceeeEEEEeCCCC----EEEEecCCCCcEEEEEEee
Q 019103 280 RLVAAGYNGIDVLNGIAWDSNRN----RIFVTGKLWPKLYEINLRE 321 (346)
Q Consensus 280 ~~~~~~~~~~~vlNGIA~d~~~~----~LfVTGK~Wp~l~ev~l~~ 321 (346)
...|||||++++++ +|||+.-.-.+|+++.+.+
T Consensus 171 ---------~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~ 207 (314)
T d1pjxa_ 171 ---------FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG 207 (314)
T ss_dssp ---------ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE
T ss_pred ---------cceeeeeEECCCCCcceeEEEEEeecccceEEeeccC
Confidence 12689999999876 8999998889999988753
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.16 E-value=2e-09 Score=101.10 Aligned_cols=217 Identities=10% Similarity=0.017 Sum_probs=133.1
Q ss_pred EEEEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECC-------------CCcEEE---EeccCCCeeEEEEE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALE-------------TGKVEA---INQMEGSYFGEGLT 156 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~-------------Tgkv~~---~~~l~~~~FgeGit 156 (346)
..+...+.+..| .++.+++|++ +|+.+--|+..+|..+... ++++.. .......+..+++.
T Consensus 74 ~~~~~~~~~~~p--~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~ 151 (365)
T d1jofa_ 74 VHEASHPIGGHP--RANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV 151 (365)
T ss_dssp EEEEEEECCSSG--GGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE
T ss_pred EEEeeecCCCCc--EEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEE
Confidence 334445665566 6899998884 7887666777777765432 222211 11222333445555
Q ss_pred E--eCCEEEEEEeeCCEEEEEECC-C--CcEEEEEec---C-CCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEE---
Q 019103 157 L--LGEKLFQVTWLQKTGFIYDQN-N--LNKLEEFTH---Q-MKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVI--- 223 (346)
Q Consensus 157 ~--~g~~LY~ltw~~~~v~V~D~~-t--l~~i~ti~~---~-~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi--- 223 (346)
. +|+++|+++...+++++|+.. + +.....+.. + .|.+..+++||+++|+++ .+++|.++|.++.+..
T Consensus 152 ~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~ 231 (365)
T d1jofa_ 152 FDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY 231 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred ECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEE
Confidence 5 688999999999999999744 2 233333332 2 467788999999999988 5999999887665432
Q ss_pred --EEEEeccCCe---------eeeeceeeEee-C-CEEEEEecCCCe-----EEEEeCCC-CeEEEEEECCchhhhhhhc
Q 019103 224 --RKDIVRYKGR---------EVRNLNELEFI-K-GEVWANVWQTDC-----IARISHED-GVVLGWVLLPNLRERLVAA 284 (346)
Q Consensus 224 --~~I~V~~~G~---------pv~~lNELE~~-~-G~LyaNv~~sn~-----I~vID~~T-G~Vv~~I~l~~l~~~~~~~ 284 (346)
.++.+...+. ......++.+. | .+||+.+...+. |+.++... |.+.....+ . .
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~---~-----~ 303 (365)
T d1jofa_ 232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL---S-----P 303 (365)
T ss_dssp EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE---E-----E
T ss_pred EeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEe---e-----E
Confidence 2222211110 01112233333 4 489998876554 66665543 444332211 0 0
Q ss_pred cCCCCceeeEEEEeC-CCCEEEEecCCCCcEEEEEEe
Q 019103 285 GYNGIDVLNGIAWDS-NRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 285 ~~~~~~vlNGIA~d~-~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
....+..|+|||++| +|+.|||+++..+.|.-.++.
T Consensus 304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence 112345789999998 789999999999988877654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.08 E-value=7.7e-09 Score=97.03 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=113.6
Q ss_pred EEEEecCCCCcceeEEEecCCE-EEEEcCCCCCCeEEEEECC-CCcEEEEe--c---cCCCeeEEEEEEeCCEEEEEEee
Q 019103 96 VNEFPHDPRAFTQGLLYAENDT-LFESTGLYGRSSVRRVALE-TGKVEAIN--Q---MEGSYFGEGLTLLGEKLFQVTWL 168 (346)
Q Consensus 96 v~t~phd~~~FTqGL~~~~d~~-LyeStGlyg~s~V~~iDl~-Tgkv~~~~--~---l~~~~FgeGit~~g~~LY~ltw~ 168 (346)
+.....+..+...++.|+|||+ ||++.- |.++|.+++.+ +|++...- . -+..|.+.-+..+++.+|++++.
T Consensus 136 ~~~~~~q~~~h~h~v~~sPdG~~l~v~d~--g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~ 213 (365)
T d1jofa_ 136 VQNYEYQENTGIHGMVFDPTETYLYSADL--TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA 213 (365)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ccCcccCCCCcceEEEECCCCCEEEEeeC--CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC
Confidence 3334445566668999999995 888764 78899999754 45543222 1 23456555555577899999999
Q ss_pred CCEEEEEECCCCcEE-----EEEecC----------------CCceeEEeeCCCEEEEEC-CCCe-----EEEEeCC-CC
Q 019103 169 QKTGFIYDQNNLNKL-----EEFTHQ----------------MKDGWGLATDGKVLFGSD-GSSM-----LYQIDPQ-TL 220 (346)
Q Consensus 169 ~~~v~V~D~~tl~~i-----~ti~~~----------------~peGwGLt~Dg~~LyvSd-Gs~~-----l~vIDp~-T~ 220 (346)
++.|.+||.++.+.. .++++- .+....++|||++||+++ +.+. |..++.. +.
T Consensus 214 ~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g 293 (365)
T d1jofa_ 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG 293 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCC
Confidence 999999998765433 233320 123456899999999998 3333 6665543 33
Q ss_pred cEEEEEEecc----CCeeeeeceeeEee--CC-EEEEEecCCCeEEEE--eCCCCeEEEEEECC
Q 019103 221 KVIRKDIVRY----KGREVRNLNELEFI--KG-EVWANVWQTDCIARI--SHEDGVVLGWVLLP 275 (346)
Q Consensus 221 kvi~~I~V~~----~G~pv~~lNELE~~--~G-~LyaNv~~sn~I~vI--D~~TG~Vv~~I~l~ 275 (346)
.+.....+.. .+.|.. +.+. +| +|||++..++.|.+. |.++++.+..++++
T Consensus 294 ~~~~~~~~~~~~~~G~~p~~----i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~~~vp 353 (365)
T d1jofa_ 294 SIEKQLFLSPTPTSGGHSNA----VSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIP 353 (365)
T ss_dssp CEEEEEEEEECSSCCTTCCC----EEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEEEECC
T ss_pred ceeeEeEeeEEEcCCCCccE----EEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEEEECC
Confidence 4433332211 233433 5554 44 799999999987765 77788888888773
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.9e-08 Score=91.16 Aligned_cols=157 Identities=12% Similarity=0.055 Sum_probs=114.5
Q ss_pred eeEEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEe--CCEEEEEEeeC-CEEEEEECCCCcE
Q 019103 108 QGLLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLL--GEKLFQVTWLQ-KTGFIYDQNNLNK 182 (346)
Q Consensus 108 qGL~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~--g~~LY~ltw~~-~~v~V~D~~tl~~ 182 (346)
.||+++. .+.||.+.. +.++|.+++++.......+.-. ..| .|++++ ++.||.++|.+ .++...+.+--..
T Consensus 80 ~glAvD~~~~~lY~~d~--~~~~I~v~~~~g~~~~~~~~~~~~~P--~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~ 155 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDS--VLGTVSVADTKGVKRKTLFRENGSKP--RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 155 (266)
T ss_dssp CEEEEETTTTEEEEEET--TTTEEEEEETTSSSEEEEEECTTCCE--EEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred ceEEEeeccceEEEEec--CCCEEEeEecCCceEEEEEcCCCCCc--ceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence 6999984 568999976 6679999999977654444322 344 556665 68999999875 4788888754333
Q ss_pred EEEEec--CCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccC--CeeeeeceeeEeeCCEEEEEecCCCe
Q 019103 183 LEEFTH--QMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYK--GREVRNLNELEFIKGEVWANVWQTDC 257 (346)
Q Consensus 183 i~ti~~--~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~--G~pv~~lNELE~~~G~LyaNv~~sn~ 257 (346)
..-+.. ..|.|.++++++++||.+| +.++|..+|....... .+..... ..|+. |...+++||.+.|.++.
T Consensus 156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~-~~~~~~~~~~~p~~----lav~~~~ly~td~~~~~ 230 (266)
T d1ijqa1 156 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFS----LAVFEDKVFWTDIINEA 230 (266)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEE----EEEETTEEEEEETTTTE
T ss_pred ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE-EEEeCCCcccccEE----EEEECCEEEEEECCCCe
Confidence 332332 3578888888899999999 4889999998765432 2222222 24554 88889999999999999
Q ss_pred EEEEeCCCCeEEEEEE
Q 019103 258 IARISHEDGVVLGWVL 273 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~ 273 (346)
|.++|..+|+.+..+.
T Consensus 231 I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 231 IFSANRLTGSDVNLLA 246 (266)
T ss_dssp EEEEETTTCCCCEEEE
T ss_pred EEEEECCCCcceEEEE
Confidence 9999999998776663
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.04 E-value=4.1e-08 Score=88.02 Aligned_cols=193 Identities=13% Similarity=0.122 Sum_probs=129.2
Q ss_pred ceeEEEecCC-E-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEE
Q 019103 107 TQGLLYAEND-T-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 107 TqGL~~~~d~-~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
..|+++.++. . ++...+ +...|.++|. +|+.......+.-..+.+++++. +.+|+++...+.++++|+ +++.+
T Consensus 72 p~~~~~~~~~~~~~~~~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~ 147 (279)
T d1q7fa_ 72 PNRVAVVRNSGDIIVTERS--PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVL 147 (279)
T ss_dssp EEEEEEETTTTEEEEEECG--GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEE
T ss_pred cccccccccccccceeccC--Cccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCcee
Confidence 3577776543 3 444443 5568888876 57777777655444567788864 689999999999999996 56788
Q ss_pred EEEecC--CCceeEEeeC-CCEEEEEC-CCCeEEEEeCCCCcEEEEEEec-cCCeeeeeceeeEee-CCEEEEEecCCC-
Q 019103 184 EEFTHQ--MKDGWGLATD-GKVLFGSD-GSSMLYQIDPQTLKVIRKDIVR-YKGREVRNLNELEFI-KGEVWANVWQTD- 256 (346)
Q Consensus 184 ~ti~~~--~peGwGLt~D-g~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~-~~G~pv~~lNELE~~-~G~LyaNv~~sn- 256 (346)
.++... ....++++.| ...+|++| ..+.|+++|+. ++.+.++... ....|.. +.++ +|.|||+.+..+
T Consensus 148 ~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~g----iavD~~G~i~Vad~~~~~ 222 (279)
T d1q7fa_ 148 HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIG----VGINSNGEILIADNHNNF 222 (279)
T ss_dssp EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEE----EEECTTCCEEEEECSSSC
T ss_pred ecccccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcc----cccccCCeEEEEECCCCc
Confidence 887542 2344455444 23789988 48899999975 5666655321 1122433 5554 689999987666
Q ss_pred eEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEeec
Q 019103 257 CIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLREM 322 (346)
Q Consensus 257 ~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~~~ 322 (346)
.|.+.| .+|+.+.++.. .. ...-|.|||+++++ +|||+..+ .++..-|.+++
T Consensus 223 ~v~~f~-~~G~~~~~~~~-~~----------~~~~p~~vav~~dG-~l~V~~~n-~~v~~fr~~~~ 274 (279)
T d1q7fa_ 223 NLTIFT-QDGQLISALES-KV----------KHAQCFDVALMDDG-SVVLASKD-YRLYIYRYVQL 274 (279)
T ss_dssp EEEEEC-TTSCEEEEEEE-SS----------CCSCEEEEEEETTT-EEEEEETT-TEEEEEECSCC
T ss_pred EEEEEC-CCCCEEEEEeC-CC----------CCCCEeEEEEeCCC-cEEEEeCC-CeEEEEEeeee
Confidence 576666 57999888854 11 12358999999987 59999754 56666665543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.99 E-value=2.1e-09 Score=105.67 Aligned_cols=203 Identities=12% Similarity=0.111 Sum_probs=143.7
Q ss_pred eeEEEE--EEecCCCCcceeEEEecCC-EEEEEcCCCCC-------------------CeEEEEECCCCcEEEEeccCCC
Q 019103 92 TIQVVN--EFPHDPRAFTQGLLYAEND-TLFESTGLYGR-------------------SSVRRVALETGKVEAINQMEGS 149 (346)
Q Consensus 92 t~~Vv~--t~phd~~~FTqGL~~~~d~-~LyeStGlyg~-------------------s~V~~iDl~Tgkv~~~~~l~~~ 149 (346)
++++.+ ++|.. ...+|+....+. +.|+.++ ++ +.+.++|.+++++..++.++..
T Consensus 119 ~fkt~kIi~iPn~--~~~HG~r~~~~p~T~YV~~~--~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ 194 (459)
T d1fwxa2 119 VMKCDAILEIPNA--KGIHGLRPQKWPRSNYVFCN--GEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN 194 (459)
T ss_dssp TTEEEEEEECSSC--CSEEEEEECCSSBCSEEEEE--ECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSC
T ss_pred ceeeeEEEecCCC--CCCceeecccCCCeEEEEcc--CccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCCC
Confidence 456655 55653 344898886554 6777653 22 4578999999999999999988
Q ss_pred eeEEEEEEeCCEEEEEEeeC-------------------------------------CEEEEEECCC---CcEEEEEecC
Q 019103 150 YFGEGLTLLGEKLFQVTWLQ-------------------------------------KTGFIYDQNN---LNKLEEFTHQ 189 (346)
Q Consensus 150 ~FgeGit~~g~~LY~ltw~~-------------------------------------~~v~V~D~~t---l~~i~ti~~~ 189 (346)
+=..+.+.+|+.+|+..+.+ +.+-|+|..+ ...++.+|++
T Consensus 195 ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp 274 (459)
T d1fwxa2 195 LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA 274 (459)
T ss_dssp CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEE
T ss_pred hhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecC
Confidence 77778888899999886543 4457889664 4677889987
Q ss_pred -CCceeEEeeCCCEEEEECC-CCeEEEEeCCCCcE------------EEEEEeccCCeeeeeceeeEee-CCEEEEEecC
Q 019103 190 -MKDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKV------------IRKDIVRYKGREVRNLNELEFI-KGEVWANVWQ 254 (346)
Q Consensus 190 -~peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kv------------i~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~ 254 (346)
.|.|..++|||+++|+++. +++++|||.+.+.. .+..++|- .|.+ -+|+ .|..|.+.+.
T Consensus 275 KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elgl--gPLh----t~fd~~g~aytslfi 348 (459)
T d1fwxa2 275 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL--GPLH----TAFDGRGNAYTSLFL 348 (459)
T ss_dssp SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCS--CEEE----EEECTTSEEEEEETT
T ss_pred CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCc--Cccc----cccCCCceEEEEeec
Confidence 7999999999999999995 99999999875432 23333333 2544 3455 4789999999
Q ss_pred CCeEEEEeCC----------CCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 255 TDCIARISHE----------DGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 255 sn~I~vID~~----------TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
+..|++-+.+ ...|+.++|+. -.+... ..+-|=.-+|+|+.|.+.+|..-
T Consensus 349 ds~v~kw~~~~~~~~~~~~~~~~v~~k~~v~-y~~gh~-------~~~~g~t~~~dgk~l~~~nk~sk 408 (459)
T d1fwxa2 349 DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPGHL-------KTVMGETLDATNDWLVCLSKFSK 408 (459)
T ss_dssp TTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEEEE-------EETTTTSTTCCSSEEEEEESCCT
T ss_pred cceEEEEecchhhhhhccccCCcceeccccc-cCCCCC-------ccCcCCcCCCCCCEEEEeccccc
Confidence 9999999974 34899999882 221110 11112223577777777777653
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=1.5e-07 Score=84.39 Aligned_cols=195 Identities=12% Similarity=0.027 Sum_probs=133.5
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCE
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKT 171 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~ 171 (346)
++..+++.. ......+.+++++.++.+++ .+..|..+|+.+++........... ...++. .+..++. .-.++.
T Consensus 132 ~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~--~d~~i~~~~~~~~~~~~~~~~~~~~-v~~l~~s~~~~~~~~-~~~d~~ 206 (337)
T d1gxra_ 132 RIKAELTSS-APACYALAISPDSKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISNDGTKLWT-GGLDNT 206 (337)
T ss_dssp EEEEEEECS-SSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEE-EETTSE
T ss_pred ccccccccc-cccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc-cccccc
Confidence 445555432 33346888999887777766 5569999999999987766543222 233444 3455544 455799
Q ss_pred EEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEE
Q 019103 172 GFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVW 249 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~Ly 249 (346)
+.++|.++.+.+.++.+. ......++++++.|++...++.+.++|..+.+.... ..+..+ ++.+.+. +|..+
T Consensus 207 v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~---i~~v~~s~~g~~l 280 (337)
T d1gxra_ 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL---HLHESC---VLSLKFAYCGKWF 280 (337)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE---CCCSSC---EEEEEECTTSSEE
T ss_pred ccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccc---cccccc---cceEEECCCCCEE
Confidence 999999999999999875 224456778999999877788999999998876432 112122 2345554 56555
Q ss_pred EEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 250 ANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 250 aNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
++.-.++.|.+.|..+++.+..+.- ......++|+|+++.|++++ ...+|
T Consensus 281 ~s~s~Dg~i~iwd~~~~~~~~~~~~--------------~~~v~~~~~s~d~~~l~t~s-~D~~I 330 (337)
T d1gxra_ 281 VSTGKDNLLNAWRTPYGASIFQSKE--------------SSSVLSCDISVDDKYIVTGS-GDKKA 330 (337)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEC--------------SSCEEEEEECTTSCEEEEEE-TTSCE
T ss_pred EEEeCCCeEEEEECCCCCEEEEccC--------------CCCEEEEEEeCCCCEEEEEe-CCCeE
Confidence 6555688999999999999877642 11346799999988765544 44443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.92 E-value=3e-08 Score=87.28 Aligned_cols=177 Identities=10% Similarity=-0.037 Sum_probs=119.4
Q ss_pred EEEec-CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC-CEEEEEECCCCcEEEEEe
Q 019103 110 LLYAE-NDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-KTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 110 L~~~~-d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~-~~v~V~D~~tl~~i~ti~ 187 (346)
-.|+| ||+++..++ .+.|.+||..+|++++ +.-+.........++|++|+.+...+ +.++++|.++.+......
T Consensus 8 ~~fSP~dG~~~a~~~---~g~v~v~d~~~~~~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~ 83 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS---RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE 83 (360)
T ss_dssp EEEEECGGGCEEEEE---TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred ccccCCCCCEEEEEE---CCeEEEEECCCCcEEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC
Confidence 35788 887665543 2499999999998765 34445555544555677877765554 578999999988776555
Q ss_pred cC-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCE-EEEEe---------cCC
Q 019103 188 HQ-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGE-VWANV---------WQT 255 (346)
Q Consensus 188 ~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~-LyaNv---------~~s 255 (346)
+. ......++|||++|......+.++++|.++.+....+..... ....+.+. ||+ |.... ...
T Consensus 84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~la~~~~~~~~~~~~~~~ 158 (360)
T d1k32a3 84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGFPLKHGETDGYVM 158 (360)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred CCceEEeeeecccccccceeccccccccccccccceeeeeecccc-----cccchhhccceeeeeeeccccccceeeccc
Confidence 53 235677899999999988899999999999998877665432 11234443 453 33221 122
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
..+.+.|.++++...... ......+.+|+|++++|+..+.
T Consensus 159 ~~~~v~d~~~~~~~~~~~--------------~~~~~~~~~~spdg~~l~~~s~ 198 (360)
T d1k32a3 159 QAIHVYDMEGRKIFAATT--------------ENSHDYAPAFDADSKNLYYLSY 198 (360)
T ss_dssp EEEEEEETTTTEEEECSC--------------SSSBEEEEEECTTSCEEEEEES
T ss_pred cceeeeccccCceeeecc--------------cccccccccccCCCCEEEEEeC
Confidence 357788888887643221 1123477999999999887653
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=4.4e-07 Score=81.11 Aligned_cols=212 Identities=9% Similarity=0.056 Sum_probs=137.5
Q ss_pred ceeeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe-----------------e
Q 019103 89 SIYTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY-----------------F 151 (346)
Q Consensus 89 ~~~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~-----------------F 151 (346)
......+.+++.|... ...+.|++||+++.+ | ++..|++||+.+|+.+......... .
T Consensus 49 ~~~~~~l~~~~~H~~~--V~~l~fs~dg~~las-g--~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (388)
T d1erja_ 49 REIDVELHKSLDHTSV--VCCVKFSNDGEYLAT-G--CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123 (388)
T ss_dssp CCEEEEEEEEEECSSC--CCEEEECTTSSEEEE-E--CBSCEEEEETTTCCEEEEECC-----------------CCCCB
T ss_pred cceeeeeEeeCCCCCc--EEEEEECCCCCEEEE-E--eCCeEEEEEecccceEeeecccccccccccccccccccCCCCC
Confidence 3445677888888433 369999999987655 5 3459999999999988776432110 0
Q ss_pred EEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEEEecCCC--ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019103 152 GEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMK--DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 152 geGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~p--eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
-..++... +.+.++.-.++.+.++|..+.+.+..+..... .....++++..++.+..+..+.++|..+.........
T Consensus 124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 203 (388)
T d1erja_ 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 203 (388)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccc
Confidence 12233322 23344445688999999999999888764211 2344567888898888889999999999887766655
Q ss_pred ccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEec
Q 019103 229 RYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTG 308 (346)
Q Consensus 229 ~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTG 308 (346)
... ... . ..-..++.+++..-.++.|.+.|..+++.+.++...... . ..-....+.++|+|+++.|++.+
T Consensus 204 ~~~--~~~-~-~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~-~-----~~h~~~v~~l~~s~~~~~l~s~~ 273 (388)
T d1erja_ 204 EDG--VTT-V-AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES-G-----TGHKDSVYSVVFTRDGQSVVSGS 273 (388)
T ss_dssp SSC--EEE-E-EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred ccc--ccc-c-cccCCCCCeEEEEcCCCeEEEeecccCccceeecccccc-c-----cCCCCCEEEEEECCCCCEEEEEE
Confidence 432 111 0 011225666665556888999999999999888542211 0 01123567899999988776554
Q ss_pred CCCCcEEE
Q 019103 309 KLWPKLYE 316 (346)
Q Consensus 309 K~Wp~l~e 316 (346)
....+..
T Consensus 274 -~d~~i~i 280 (388)
T d1erja_ 274 -LDRSVKL 280 (388)
T ss_dssp -TTSEEEE
T ss_pred -CCCcEEE
Confidence 3344433
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.86 E-value=1e-06 Score=76.14 Aligned_cols=202 Identities=9% Similarity=0.010 Sum_probs=135.2
Q ss_pred eeEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC------------CeeEEEE---
Q 019103 92 TIQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG------------SYFGEGL--- 155 (346)
Q Consensus 92 t~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~------------~~FgeGi--- 155 (346)
.++..+++. | ..-...|.|++++.++.+++ .+..|++||+.+++.+..++... .++..|-
T Consensus 44 ~~~~~~tL~GH--~~~I~~l~~s~~~~~l~sgs--~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~ 119 (340)
T d1tbga_ 44 QMRTRRTLRGH--LAKIYAMHWGTDSRLLVSAS--QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp CCCEEEEECCC--SSCEEEEEECTTSSEEEEEE--TTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTC
T ss_pred ceeeeEEECCC--CCCEEEEEECCCCCEEEEEE--CCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccc
Confidence 355666664 5 33347999999998888877 45699999999998777664321 1111110
Q ss_pred ------------------EE------------------------------------------------------eCCEEE
Q 019103 156 ------------------TL------------------------------------------------------LGEKLF 163 (346)
Q Consensus 156 ------------------t~------------------------------------------------------~g~~LY 163 (346)
.+ ..+.++
T Consensus 120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (340)
T d1tbga_ 120 ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence 00 011233
Q ss_pred EEEeeCCEEEEEECCCCcEEEEEecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceee
Q 019103 164 QVTWLQKTGFIYDQNNLNKLEEFTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNEL 241 (346)
Q Consensus 164 ~ltw~~~~v~V~D~~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNEL 241 (346)
++.-.++.+.++|..+.+.+.++... .-....++||++.|+++..++.|.++|..+.+...+........++ +.+
T Consensus 200 ~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i---~~~ 276 (340)
T d1tbga_ 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI---TSV 276 (340)
T ss_dssp EEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE---EEE
T ss_pred EEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCce---EEE
Confidence 34455688999999999999988742 1134456789999988877889999999998887766554432332 345
Q ss_pred Eee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 242 EFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 242 E~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
.+. +|.+.+..-.++.|.+.|..+++.+.++.-. ....++|+|+|+++.|+.++ ..++|
T Consensus 277 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H-------------~~~V~~l~~s~d~~~l~s~s-~Dg~v 336 (340)
T d1tbga_ 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-------------DNRVSCLGVTDDGMAVATGS-WDSFL 336 (340)
T ss_dssp EECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC-------------SSCEEEEEECTTSSCEEEEE-TTSCE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC-------------CCCEEEEEEeCCCCEEEEEc-cCCEE
Confidence 554 4555554445788999999999999888431 12457899999988765544 44444
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=8.6e-07 Score=79.32 Aligned_cols=188 Identities=12% Similarity=0.086 Sum_probs=125.9
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCC--cEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCC
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETG--KVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNL 180 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tg--kv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl 180 (346)
......+.|+||+.++.+++ .+..|++||+... +........... ...++... +.+.++...++.+.++|..+.
T Consensus 97 ~~~I~~v~~s~dg~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~ 173 (337)
T d1gxra_ 97 DNYIRSCKLLPDGCTLIVGG--EASTLSIWDLAAPTPRIKAELTSSAPA-CYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173 (337)
T ss_dssp TSBEEEEEECTTSSEEEEEE--SSSEEEEEECCCC--EEEEEEECSSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CCcEEEEEEcCCCCEEEEee--ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 44567999999998777766 4569999998754 444444332211 22344433 345555677889999999999
Q ss_pred cEEEEEecCCCc--eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCe
Q 019103 181 NKLEEFTHQMKD--GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDC 257 (346)
Q Consensus 181 ~~i~ti~~~~pe--GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~ 257 (346)
+........... ...++++++.++++..++.|.++|.++++.+....... + ++.+.+. ++...+..-.++.
T Consensus 174 ~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~---~---i~~l~~~~~~~~l~~~~~d~~ 247 (337)
T d1gxra_ 174 TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS---Q---IFSLGYCPTGEWLAVGMESSN 247 (337)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---C---EEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccceeeccccccc---c---eEEEEEcccccccceeccccc
Confidence 988877643223 33456889999988778999999999999887776533 2 2345554 4544444445788
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
|.+.|..+++...... .....++++|+|+++.|+.++. .+.|+
T Consensus 248 i~i~d~~~~~~~~~~~--------------~~~~i~~v~~s~~g~~l~s~s~-Dg~i~ 290 (337)
T d1gxra_ 248 VEVLHVNKPDKYQLHL--------------HESCVLSLKFAYCGKWFVSTGK-DNLLN 290 (337)
T ss_dssp EEEEETTSSCEEEECC--------------CSSCEEEEEECTTSSEEEEEET-TSEEE
T ss_pred cccccccccccccccc--------------cccccceEEECCCCCEEEEEeC-CCeEE
Confidence 9999999998653321 1234688999999987665543 34443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.81 E-value=1.7e-07 Score=85.54 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=113.6
Q ss_pred CCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECCCCe
Q 019103 135 LETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSM 211 (346)
Q Consensus 135 l~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~ 211 (346)
+.+.|++... +-..|||-..+ ++.||-++...++++.+|+++.+. ..++.+ .+.+.++..||+.++.++ +.
T Consensus 6 ~~~~~~~~~~---~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~--~g 79 (295)
T d2ghsa1 6 PFAGRVLDET---PMLLGEGPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASD--DG 79 (295)
T ss_dssp CCCCEEEECS---CCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEET--TE
T ss_pred ceeEEEEcCC---CCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEe--Cc
Confidence 4445544432 23458998876 588999999999999999998765 456654 345556667765444443 57
Q ss_pred EEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCC------CeEEEEeCCCCeEEEEEECCchhhhhhhc
Q 019103 212 LYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQT------DCIARISHEDGVVLGWVLLPNLRERLVAA 284 (346)
Q Consensus 212 l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s------n~I~vID~~TG~Vv~~I~l~~l~~~~~~~ 284 (346)
|+.+|+++.+...-..+ ..+.+...+|.+..+ +|++|++.... ..+..+ .+|++....+ +
T Consensus 80 l~~~d~~tg~~~~l~~~-~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~--~~g~~~~~~~--~-------- 146 (295)
T d2ghsa1 80 LFLRDTATGVLTLHAEL-ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV--AKGKVTKLFA--D-------- 146 (295)
T ss_dssp EEEEETTTCCEEEEECS-STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE--ETTEEEEEEE--E--------
T ss_pred cEEeecccceeeEEeee-ecCCCcccceeeEECCCCCEEEEeccccccccceeEeee--cCCcEEEEee--c--------
Confidence 99999999987543333 344555677888766 78999876432 234444 3566543331 1
Q ss_pred cCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEEe
Q 019103 285 GYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINLR 320 (346)
Q Consensus 285 ~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l~ 320 (346)
...+||++++++++.+|++.-.-.+||...+.
T Consensus 147 ----~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d 178 (295)
T d2ghsa1 147 ----ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 178 (295)
T ss_dssp ----ESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred ----cCCcceeeecCCCceEEEeecccceeeEeeec
Confidence 23689999999999999999999999998874
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.78 E-value=2.6e-07 Score=83.31 Aligned_cols=198 Identities=11% Similarity=0.048 Sum_probs=131.0
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc---CCCeeEEEEEEeCCEEEEEEe-eCCEEEEEECCC
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM---EGSYFGEGLTLLGEKLFQVTW-LQKTGFIYDQNN 179 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l---~~~~FgeGit~~g~~LY~ltw-~~~~v~V~D~~t 179 (346)
......+.|+|||+++.+++ .+..|++||+.+++......+ ........+..+++.|..+.. ....+.|+|.++
T Consensus 58 ~~~v~~~~~sp~g~~latg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~ 135 (311)
T d1nr0a1 58 SHQTTVAKTSPSGYYCASGD--VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 135 (311)
T ss_dssp SSCEEEEEECTTSSEEEEEE--TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred CCCEEEEEEeCCCCeEeccc--cCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccc
Confidence 34458999999998887777 456999999999874433322 233334333344566666543 345688999999
Q ss_pred CcEEEEEecCC--CceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCC
Q 019103 180 LNKLEEFTHQM--KDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQT 255 (346)
Q Consensus 180 l~~i~ti~~~~--peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s 255 (346)
.+.+.++.... -....++++++.++++- .+..|.++|.++++....+.... .++ +.+.+. +|.+++..-.+
T Consensus 136 ~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~--~~i---~~v~~~p~~~~l~~~~~d 210 (311)
T d1nr0a1 136 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT--KFV---HSVRYNPDGSLFASTGGD 210 (311)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS--SCE---EEEEECTTSSEEEEEETT
T ss_pred ccccccccccccccccccccccceeeeccccccccccccccccccccccccccc--ccc---cccccCcccccccccccc
Confidence 98888876421 13345678998877753 46789999999998877665432 233 345554 56666666568
Q ss_pred CeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 256 DCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 256 n~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
+.|.+.|..+++.+..+........ .-....+.++|+|+++.|+..+ ....|+
T Consensus 211 ~~v~~~d~~~~~~~~~~~~~~~~~~------~h~~~V~~~~~s~~~~~l~tgs-~Dg~v~ 263 (311)
T d1nr0a1 211 GTIVLYNGVDGTKTGVFEDDSLKNV------AHSGSVFGLTWSPDGTKIASAS-ADKTIK 263 (311)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSC------SSSSCEEEEEECTTSSEEEEEE-TTSEEE
T ss_pred ccccccccccccccccccccccccc------cccccccccccCCCCCEEEEEe-CCCeEE
Confidence 8999999999998888754222110 0023457899999998776554 344443
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.70 E-value=1.4e-06 Score=78.43 Aligned_cols=196 Identities=9% Similarity=-0.015 Sum_probs=130.8
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEE--eCCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~--~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
....+.|++++.++.+.|......++++|.++++....+.-.... -..++. .++.++++.-.++.+.++|.++++..
T Consensus 104 ~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~-v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~ 182 (311)
T d1nr0a1 104 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA-MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK 182 (311)
T ss_dssp CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC-EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccceeeecccccccccccccccccccc
Confidence 347899999998776666434567999999999876655432221 233444 45556676778899999999999998
Q ss_pred EEEecC-C-CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccC---CeeeeeceeeEee-CCEEEEEecCCCe
Q 019103 184 EEFTHQ-M-KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYK---GREVRNLNELEFI-KGEVWANVWQTDC 257 (346)
Q Consensus 184 ~ti~~~-~-peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~---G~pv~~lNELE~~-~G~LyaNv~~sn~ 257 (346)
..+... . -....++||++.+++...++.|.++|..+.+.+.+...... |+. ..++-+.+. +|...++.-.++.
T Consensus 183 ~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~s~~~~~l~tgs~Dg~ 261 (311)
T d1nr0a1 183 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS-GSVFGLTWSPDGTKIASASADKT 261 (311)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS-SCEEEEEECTTSSEEEEEETTSE
T ss_pred cccccccccccccccCcccccccccccccccccccccccccccccccccccccccc-ccccccccCCCCCEEEEEeCCCe
Confidence 888642 1 13556788999998887889999999999888776654321 111 112345554 4554455546788
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
|.+.|.++++++.+++...-. .....+++++ ++.|++.+ ..+.|.-
T Consensus 262 v~iwd~~t~~~~~~l~~~~~~----------~~~~~~~~~~--~~~l~s~s-~dG~i~~ 307 (311)
T d1nr0a1 262 IKIWNVATLKVEKTIPVGTRI----------EDQQLGIIWT--KQALVSIS-ANGFINF 307 (311)
T ss_dssp EEEEETTTTEEEEEEECCSSG----------GGCEEEEEEC--SSCEEEEE-TTCCEEE
T ss_pred EEEEECCCCcEEEEEECCCCc----------cceEEEEEec--CCEEEEEE-CCCEEEE
Confidence 999999999999999763211 1123456665 44566555 4565543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.63 E-value=1e-05 Score=67.99 Aligned_cols=187 Identities=8% Similarity=-0.015 Sum_probs=125.0
Q ss_pred cceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 106 FTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 106 FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
....+.+.+++..+++.+ .+..+.+||+.+++....+...... ...++... +.++++.-.++.+.++|..+.+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~ 179 (317)
T d1vyhc1 103 NVSSVSIMPNGDHIVSAS--RDKTIKMWEVQTGYCVKTFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179 (317)
T ss_dssp CEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred cceeeeccCCCceEEeec--cCcceeEeecccceeeeEEccCCCc-ceeeecccCCCEEEEEeCCCeEEEEeeccceeeE
Confidence 335678888886666666 5569999999999988877644332 23344432 3444555678999999999999888
Q ss_pred EEecCCCcee--EEee--------------------CCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE
Q 019103 185 EFTHQMKDGW--GLAT--------------------DGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (346)
Q Consensus 185 ti~~~~peGw--GLt~--------------------Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE 242 (346)
++......-. .+++ ++..++....++.|.++|..+++.+.++.-.. .++ +.+.
T Consensus 180 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~--~~v---~~~~ 254 (317)
T d1vyhc1 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD--NWV---RGVL 254 (317)
T ss_dssp EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCE---EEEE
T ss_pred EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCC--CCE---EEEE
Confidence 7753211111 1222 34566666667899999999999888876533 232 2344
Q ss_pred ee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 243 FI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 243 ~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
+. +|.+.+..-.++.|.+.|..+++.+.++... ....+.++|+|+++.|+.++ ...+|
T Consensus 255 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-------------~~~V~~~~~s~~~~~l~s~s-~Dg~i 313 (317)
T d1vyhc1 255 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-------------EHFVTSLDFHKTAPYVVTGS-VDQTV 313 (317)
T ss_dssp ECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-------------SSCEEEEEECSSSSCEEEEE-TTSEE
T ss_pred ECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC-------------CCCEEEEEEcCCCCEEEEEe-CCCeE
Confidence 44 5665555556889999999999998888531 12357899999988776554 34443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.63 E-value=3.2e-06 Score=73.11 Aligned_cols=203 Identities=12% Similarity=0.087 Sum_probs=112.8
Q ss_pred EEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEE
Q 019103 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYD 176 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D 176 (346)
.+.++...-...|+|+||++++.|++ .+..|++||+++|+.+....-.....-..++... ++++.+.+ ++.+.++|
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s--~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~-d~~v~~~~ 82 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSAD--AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSW-DDHLKVVP 82 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEET-TTEEEEEC
T ss_pred eEcCCCCCCcEEEEECCCCCEEEEEc--CCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccc-eeeEEEec
Confidence 33444455568999999998888877 4569999999999987665322221123344432 34444433 45666666
Q ss_pred CCCCcE-----------------------------------------EEEEecC-CCceeEEeeCCCEEEEECCCCeEEE
Q 019103 177 QNNLNK-----------------------------------------LEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQ 214 (346)
Q Consensus 177 ~~tl~~-----------------------------------------i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~v 214 (346)
...... ....... ......+++|++.|++...++.|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~ 162 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV 162 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred cCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 432110 0011111 1122234566777766555677888
Q ss_pred EeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceee
Q 019103 215 IDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLN 293 (346)
Q Consensus 215 IDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlN 293 (346)
+|.++.+......... ..+ ++.+.+. ++..++..-.+..|.+.|..+++.+..+.. +. ...+..+
T Consensus 163 ~d~~~~~~~~~~~~~~-~~~---i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~--~~--------~h~~~v~ 228 (299)
T d1nr0a2 163 YKLSGASVSEVKTIVH-PAE---ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS--WT--------FHTAKVA 228 (299)
T ss_dssp EEEETTEEEEEEEEEC-SSC---EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC--CC--------CCSSCEE
T ss_pred cccccccccccccccc-ccc---cccccccccccccccccccccccccccccccccccccc--cc--------ccccccc
Confidence 8877766543333221 112 2345554 344444444577788888888765443321 11 0123568
Q ss_pred EEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 294 GIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 294 GIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
+++|+|+++.|++.+. .+.|+--+
T Consensus 229 ~l~~s~~~~~l~sgs~-dg~i~iwd 252 (299)
T d1nr0a2 229 CVSWSPDNVRLATGSL-DNSVIVWN 252 (299)
T ss_dssp EEEECTTSSEEEEEET-TSCEEEEE
T ss_pred cccccccccceEEEcC-CCEEEEEE
Confidence 8999999887666554 45554433
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=2.6e-05 Score=66.36 Aligned_cols=173 Identities=13% Similarity=0.017 Sum_probs=118.1
Q ss_pred CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEE
Q 019103 126 GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFG 205 (346)
Q Consensus 126 g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~Lyv 205 (346)
.+..|+.+|+..++.+....-... ....+..++..++ +.-.++.+.++|..+.+.+.++......-..++++++.|++
T Consensus 155 ~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 232 (342)
T d2ovrb2 155 YDFMVKVWDPETETCLHTLQGHTN-RVYSLQFDGIHVV-SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVS 232 (342)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSS-CEEEEEECSSEEE-EEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEE
T ss_pred CCCeEEEeecccceeeEEEcCccc-ccccccCCCCEEE-EEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEE
Confidence 356999999999987776643322 2233455566554 44567899999999999999887543455678889998888
Q ss_pred ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhcc
Q 019103 206 SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAG 285 (346)
Q Consensus 206 SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~ 285 (346)
...++.|.++|..+.+....+..... .......+.+ ++.+++..-.+.+|.+-|.++|+.+.++......+
T Consensus 233 ~s~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~------ 303 (342)
T d2ovrb2 233 GNADSTVKIWDIKTGQCLQTLQGPNK--HQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG------ 303 (342)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTS--CSSCEEEEEE-CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG------
T ss_pred EcCCCEEEEEecccccccccccccce--eeeceeeccc-CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCC------
Confidence 77788999999999888776655321 1111222333 44445555568899999999999999886522111
Q ss_pred CCCCceeeEEEEeCCCCEEEEecCCCC
Q 019103 286 YNGIDVLNGIAWDSNRNRIFVTGKLWP 312 (346)
Q Consensus 286 ~~~~~vlNGIA~d~~~~~LfVTGK~Wp 312 (346)
.....+.+|++|++. ++++|-..+
T Consensus 304 --~~~~v~~v~~s~~~~-~la~g~~dG 327 (342)
T d2ovrb2 304 --SGGVVWRIRASNTKL-VCAVGSRNG 327 (342)
T ss_dssp --GTCEEEEEEECSSEE-EEEEECSSS
T ss_pred --CCCCEEEEEECCCCC-EEEEEeCCC
Confidence 123578899999864 555554444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=2.3e-05 Score=69.97 Aligned_cols=196 Identities=8% Similarity=-0.074 Sum_probs=127.1
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC-CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME-GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~-~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
..+.++++++.+.+.+...+..+.+++.++++.+..+.-. .......+...++.+.++.-.++.+.++|..+++...++
T Consensus 119 ~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~ 198 (325)
T d1pgua1 119 SDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198 (325)
T ss_dssp EEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE
T ss_pred EEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceec
Confidence 5788998886444433225668999999999988877532 233332233344556666777899999999999988887
Q ss_pred ecC-CC----ceeEEeeCCCEEEE-ECCCCeEEEEeCCCCcEEEEEEeccCCeeeeec-eeeEeeCCEEEEEecCCCeEE
Q 019103 187 THQ-MK----DGWGLATDGKVLFG-SDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNL-NELEFIKGEVWANVWQTDCIA 259 (346)
Q Consensus 187 ~~~-~p----eGwGLt~Dg~~Lyv-SdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~l-NELE~~~G~LyaNv~~sn~I~ 259 (346)
... .. ....++||+..+++ +..++.|.++|.++++.+.++.-.. .++..+ --+.+.||+.+++.-.+.+|.
T Consensus 199 ~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~--~~v~~~~~s~~~~dg~~l~s~s~D~~i~ 276 (325)
T d1pgua1 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ--EPVQGGIFALSWLDSQKFATVGADATIR 276 (325)
T ss_dssp CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT--BCCCSCEEEEEESSSSEEEEEETTSEEE
T ss_pred ccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccc--cccccceeeeeccCCCEEEEEeCCCeEE
Confidence 652 11 23446787655554 4567899999999999988776432 232211 123345776666666788999
Q ss_pred EEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 260 RISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 260 vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
+-|.++++++..+.+..- ......-++.++++ ..++||-...+|+-
T Consensus 277 iwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--~~l~s~s~dg~i~v 322 (325)
T d1pgua1 277 VWDVTTSKCVQKWTLDKQ---------QLGNQQVGVVATGN--GRIISLSLDGTLNF 322 (325)
T ss_dssp EEETTTTEEEEEEECCTT---------CGGGCEEEEEEEET--TEEEEEETTSCEEE
T ss_pred EEECCCCCEEEEEEecCC---------cccCeEEEEEECCC--CEEEEEECCCEEEE
Confidence 999999999999866221 11123334555543 24566666676654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=7.4e-06 Score=68.93 Aligned_cols=159 Identities=9% Similarity=0.039 Sum_probs=115.0
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeC-CEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLG-EKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g-~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
...|.|+|++.+++|++ .+..|++||+.+++.+..+...... -..++... +.+.......+.+.+.|....+....
T Consensus 20 I~~l~~sp~~~~l~s~s--~Dg~i~iWd~~~~~~~~~~~~h~~~-V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (317)
T d1vyhc1 20 VTRVIFHPVFSVMVSAS--EDATIKVWDYETGDFERTLKGHTDS-VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT 96 (317)
T ss_dssp EEEEEECSSSSEEEEEE--SSSCEEEEETTTCCCCEEECCCSSC-EEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred eEEEEEcCCCCEEEEEe--CCCeEEEEECCCCCEEEEEeCCCCc-EEEEeeecccccccccccccccccccccccccccc
Confidence 47899999998888877 4569999999999988887654332 23455543 34555566778888889888877776
Q ss_pred EecC--CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEEEEe
Q 019103 186 FTHQ--MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIARIS 262 (346)
Q Consensus 186 i~~~--~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~vID 262 (346)
+... ......++++++.++....+..+.++|.++.+.+.++..... . ...+.+. ++.+++..-.+..|.+.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~l~~~~~d~~v~~~~ 171 (317)
T d1vyhc1 97 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--W---VRMVRPNQDGTLIASCSNDQTVRVWV 171 (317)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--C---EEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC--c---ceeeecccCCCEEEEEeCCCeEEEEe
Confidence 6532 223345678899988887889999999999998887765332 1 2234444 466666666788899999
Q ss_pred CCCCeEEEEEE
Q 019103 263 HEDGVVLGWVL 273 (346)
Q Consensus 263 ~~TG~Vv~~I~ 273 (346)
..+++.+..+.
T Consensus 172 ~~~~~~~~~~~ 182 (317)
T d1vyhc1 172 VATKECKAELR 182 (317)
T ss_dssp TTTCCEEEEEC
T ss_pred eccceeeEEEe
Confidence 99999887763
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=7.7e-05 Score=66.01 Aligned_cols=201 Identities=14% Similarity=0.045 Sum_probs=115.8
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
.....+.+.+++..+.+++ .+..|.+||..+.....................++.++++.-.++.+.++|..+.+.+.
T Consensus 164 ~~v~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~ 241 (388)
T d1erja_ 164 QDIYSLDYFPSGDKLVSGS--GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241 (388)
T ss_dssp SCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred ccccccccccccccccccc--cceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccce
Confidence 3346888888776555555 45699999999998877766554432222222234555555677899999999999988
Q ss_pred EEecCC---------CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeee-------eeceeeEee-CCE
Q 019103 185 EFTHQM---------KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREV-------RNLNELEFI-KGE 247 (346)
Q Consensus 185 ti~~~~---------peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv-------~~lNELE~~-~G~ 247 (346)
++.... -....+++|++.|++...++.|.++|..+.+..........+... ..+..+.+. +|.
T Consensus 242 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 321 (388)
T d1erja_ 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 321 (388)
T ss_dssp EEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC
T ss_pred eeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC
Confidence 875320 123456789999988777889999999887665443332211110 011223333 454
Q ss_pred EEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 248 VWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 248 LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
..+..-.++.|.+.|.++|+.+.++.-..-. .......++++++|+++ +++||-...+|.
T Consensus 322 ~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~-------V~~~~~~~~~~~spd~~-~l~s~s~Dg~I~ 381 (388)
T d1erja_ 322 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNS-------VISVAVANGSSLGPEYN-VFATGSGDCKAR 381 (388)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSC-------EEEEEECSSCTTCTTCE-EEEEEETTSEEE
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEeCCCCC-------EEEEEEecCcccCCCCC-EEEEEeCCCEEE
Confidence 4444445789999999999999988531100 00011223344566655 455655566543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.44 E-value=3.5e-06 Score=76.55 Aligned_cols=204 Identities=9% Similarity=-0.013 Sum_probs=117.8
Q ss_pred ceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC---CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEE
Q 019103 107 TQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQME---GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKL 183 (346)
Q Consensus 107 TqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~---~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i 183 (346)
...++|++||+++.+++ .+..|++||+++++......+. .......+.++++.|..+ -.++.+.++|.++.+..
T Consensus 10 It~~~~s~dg~~la~~~--~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~-s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICP--NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp CCEEEECTTSSEEEEEC--SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE-ETTSCEEEEEEETTEEE
T ss_pred eEEEEECCCCCEEEEEe--CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEE-ECCCeEEEEeecccccc
Confidence 36899999998776666 4458999999999866555553 233333334446655544 35789999999887766
Q ss_pred EEEecC----CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeE
Q 019103 184 EEFTHQ----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCI 258 (346)
Q Consensus 184 ~ti~~~----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I 258 (346)
..+... ......++||++.|++..++..|.+++.+.............+.. ..+..+.+. +|+.+|..-.+..|
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~-~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR-STVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC-SCEEEEEECTTSSEEEEEETTSCE
T ss_pred cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccc-cccccccccccccceeccccCcEE
Confidence 665432 123445678999999977777777766544333222221111110 112234444 56666766667788
Q ss_pred EEEeCCCCeEEEEEECCchhhh-----hhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 259 ARISHEDGVVLGWVLLPNLRER-----LVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 259 ~vID~~TG~Vv~~I~l~~l~~~-----~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
.+.|...+.............. +...........++++|+|++++|++.+. ...|.
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-d~~i~ 226 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVC 226 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc-CCcce
Confidence 8888776553222211000000 00000112335689999999998766553 44443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=2.7e-05 Score=66.69 Aligned_cols=179 Identities=7% Similarity=-0.017 Sum_probs=116.3
Q ss_pred cCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCc
Q 019103 114 ENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD 192 (346)
Q Consensus 114 ~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~pe 192 (346)
+++.++.+.. .+..|..+|..+++.+....-.. ......+...++.+ ...-.++.+.++|..+.+.+..+......
T Consensus 169 ~~~~~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~h~~~ 245 (355)
T d1nexb2 169 GHGNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC-ISASMDTTIRIWDLENGELMYTLQGHTAL 245 (355)
T ss_dssp EETTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEE-EEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred cccceeeeec--ccceeeeeecccccceeeeeccccccccccccccceee-ecccccceEEeeecccccccccccccccc
Confidence 4455544444 45699999999999877765332 32232223334544 44556789999999999999988753223
Q ss_pred eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEE
Q 019103 193 GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 193 GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I 272 (346)
-..++.+++.|+.+..++.|.++|..+.+..-...- . .+..+. .-..++++.+... ++.|.+-|.++|+.+...
T Consensus 246 v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~--~~~~~~-~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~ 319 (355)
T d1nexb2 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH--T--NLSAIT-TFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN 319 (355)
T ss_dssp CCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEEC--T--TCCCCC-EEEECSSEEEEEE-TTEEEEEETTTCCBCCSC
T ss_pred ccccccccceeeeeecccccccccccccceeccccc--C--CceEEE-EEcCCCCEEEEEe-CCEEEEEECCCCCEEEEE
Confidence 456888899998888888999999998875433221 1 111111 1133566666553 789999999999875432
Q ss_pred ECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEE
Q 019103 273 LLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLY 315 (346)
Q Consensus 273 ~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ 315 (346)
+.+ ..+....+||+|+ .++++|...+++|
T Consensus 320 ----~~~--------~~~~V~~v~~~~~--~~~~~~s~dg~~~ 348 (355)
T d1nexb2 320 ----ILK--------DADQIWSVNFKGK--TLVAAVEKDGQSF 348 (355)
T ss_dssp ----TTT--------TCSEEEEEEEETT--EEEEEEESSSCEE
T ss_pred ----ecC--------CCCCEEEEEEcCC--eEEEEEECCCcEE
Confidence 110 1123467999875 6888887777764
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.39 E-value=1.3e-05 Score=72.65 Aligned_cols=204 Identities=10% Similarity=0.025 Sum_probs=120.6
Q ss_pred EEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC---CeeEEEEEEeCCEEEEEEeeC
Q 019103 94 QVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG---SYFGEGLTLLGEKLFQVTWLQ 169 (346)
Q Consensus 94 ~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~---~~FgeGit~~g~~LY~ltw~~ 169 (346)
+.+.++. |. .+ ...|.|+|++.++.+.+ .+..|++||+.+++......+.. ........++++.++... .+
T Consensus 42 ~~~~~l~gH~-~~-V~~l~fsp~~~~l~s~s--~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s-~d 116 (371)
T d1k8kc_ 42 VQVHELKEHN-GQ-VTGVDWAPDSNRIVTCG--TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS-GS 116 (371)
T ss_dssp EEEEEEECCS-SC-EEEEEEETTTTEEEEEE--TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred EEEEEecCCC-CC-EEEEEECCCCCEEEEEE--CCCeEEEEeecccccccccccccccccccccccccccccceeec-cc
Confidence 3444443 53 33 47999999998777777 45699999999998777665532 233333333455555554 55
Q ss_pred CEEEEEECCCCcEEEEE---ecCC---CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc------CCe----
Q 019103 170 KTGFIYDQNNLNKLEEF---THQM---KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY------KGR---- 233 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti---~~~~---peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~------~G~---- 233 (346)
+.+.+++.+........ ..+. -....++||++.|.+...+.+|.++|....+......... .+.
T Consensus 117 ~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (371)
T d1k8kc_ 117 RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 196 (371)
T ss_dssp SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE
T ss_pred CcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeee
Confidence 66666655444332222 2111 1234467899988776667889999976544321111100 000
Q ss_pred ---eeeeceeeEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecC
Q 019103 234 ---EVRNLNELEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGK 309 (346)
Q Consensus 234 ---pv~~lNELE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK 309 (346)
....++.+.+. +|...+....++.|.+.|..+++.+..+.... ...+.++|+|++ .++++|.
T Consensus 197 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~v~s~~fs~d~-~~la~g~ 262 (371)
T d1k8kc_ 197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET-------------LPLLAVTFITES-SLVAAGH 262 (371)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS-------------CCEEEEEEEETT-EEEEEET
T ss_pred ccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc-------------ccceeeeecCCC-CEEEEEc
Confidence 01123344444 45555555568889999999999988885421 135789999987 4556664
Q ss_pred C-CCcEEE
Q 019103 310 L-WPKLYE 316 (346)
Q Consensus 310 ~-Wp~l~e 316 (346)
. ...++.
T Consensus 263 d~~~~~~~ 270 (371)
T d1k8kc_ 263 DCFPVLFT 270 (371)
T ss_dssp TSSCEEEE
T ss_pred CCceEEEE
Confidence 3 334444
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.35 E-value=9e-06 Score=70.93 Aligned_cols=123 Identities=13% Similarity=0.069 Sum_probs=89.5
Q ss_pred EEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEEC
Q 019103 98 EFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQ 177 (346)
Q Consensus 98 t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~ 177 (346)
.++|+... +.+.|+|||+.+..+|..+...|.+||+++|++.....-....+...++++++.|.. ...++.++++|.
T Consensus 38 ~~~~~~~v--~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~~~~~~~~~~~ 114 (360)
T d1k32a3 38 KVPEPLRI--RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV-ANDRFEIMTVDL 114 (360)
T ss_dssp ECSCCSCE--EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEE-EETTSEEEEEET
T ss_pred EccCCCCE--EEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccce-eccccccccccc
Confidence 35775544 799999999654444433445899999999998876666667777666666665554 456788999999
Q ss_pred CCCcEEEEEecC--CCceeEEeeCCCEEEEEC--------C--CCeEEEEeCCCCcEE
Q 019103 178 NNLNKLEEFTHQ--MKDGWGLATDGKVLFGSD--------G--SSMLYQIDPQTLKVI 223 (346)
Q Consensus 178 ~tl~~i~ti~~~--~peGwGLt~Dg~~LyvSd--------G--s~~l~vIDp~T~kvi 223 (346)
++.+....+... ......+++||++|..+. + ...++++|.++.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 172 (360)
T d1k32a3 115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 172 (360)
T ss_dssp TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred cccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee
Confidence 999998888753 345677899999987642 1 336889999887653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.33 E-value=5.1e-05 Score=64.98 Aligned_cols=183 Identities=10% Similarity=0.048 Sum_probs=121.9
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
..+.+.+++.++.+.. .+.+..++..+++.+..+...... ..+++.++.+.+.....+.+.++|..+.+....+.
T Consensus 84 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~ 158 (287)
T d1pgua2 84 KVASANNDGFTAVLTN---DDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLK 158 (287)
T ss_dssp EEEEECSSSEEEEEET---TSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECS
T ss_pred eeeeeccCCceEEEee---cccceeeeccceeeeeecccccee--eeeeccCcceeeeccccceeeeeeccccceeeeee
Confidence 5677888787666644 357999999999999988876543 45677888888888888899999988777766665
Q ss_pred cCC---CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEe-----------eCCEEEEEec
Q 019103 188 HQM---KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEF-----------IKGEVWANVW 253 (346)
Q Consensus 188 ~~~---peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~-----------~~G~LyaNv~ 253 (346)
.+. .....+++||++|++.+.+..|.++|..+.+.+.....+ +..++ +.+.+ .++.++|+--
T Consensus 159 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~-h~~~v---~~~~~~p~~~~~~~~~~~~~~l~sgs 234 (287)
T d1pgua2 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF-RTSKI---NAISWKPAEKGANEEEIEEDLVATGS 234 (287)
T ss_dssp SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-CSSCE---EEEEECCCC------CCSCCEEEEEE
T ss_pred eccCCceeEEEeccCccccccccccccccceeecccccccccccc-ccccc---ceeeecccccccccccCCCCeeEeec
Confidence 431 233456789999999888889999999998865432221 11121 22322 2455666665
Q ss_pred CCCeEEEEeCCC-CeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcE
Q 019103 254 QTDCIARISHED-GVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 254 ~sn~I~vID~~T-G~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l 314 (346)
.+.+|.+-|.++ ++.+..+.- + ....++++|+|++ +|+.+| ....+
T Consensus 235 ~D~~i~iw~~~~~~~~~~~~~~---------h----~~~V~~v~~~~~~-~l~s~g-~D~~v 281 (287)
T d1pgua2 235 LDTNIFIYSVKRPMKIIKALNA---------H----KDGVNNLLWETPS-TLVSSG-ADACI 281 (287)
T ss_dssp TTSCEEEEESSCTTCCEEETTS---------S----TTCEEEEEEEETT-EEEEEE-TTSCE
T ss_pred CCCeEEEEECCCCCeEEEEeCC---------C----CCCeEEEEECCCC-EEEEEE-CCCeE
Confidence 677888888877 443332210 1 1245889999875 554444 34443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.23 E-value=9.2e-05 Score=73.47 Aligned_cols=206 Identities=9% Similarity=0.047 Sum_probs=133.2
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEE----EEEEeCCEEEEEEee-----CCEEEEEECC
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGE----GLTLLGEKLFQVTWL-----QKTGFIYDQN 178 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~Fge----Git~~g~~LY~ltw~-----~~~v~V~D~~ 178 (346)
+|+++. ++++|+.+. +..|..+|.+|||++-+..+.....+. .-.+.++.+|+.... .+.+..||++
T Consensus 109 rg~a~~-~~~i~~~~~---~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~ 184 (571)
T d2ad6a1 109 RGLAYG-AGQIVKKQA---NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLK 184 (571)
T ss_dssp CCCEEE-TTEEEEECT---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETT
T ss_pred Ccceee-CCeEEEEeC---CCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECC
Confidence 688887 589998875 359999999999998877654211111 123567999998763 6789999999
Q ss_pred CCcEEEEEecCC-------------------------------------C---ceeEEeeCCCEEEEECC----------
Q 019103 179 NLNKLEEFTHQM-------------------------------------K---DGWGLATDGKVLFGSDG---------- 208 (346)
Q Consensus 179 tl~~i~ti~~~~-------------------------------------p---eGwGLt~Dg~~LyvSdG---------- 208 (346)
|++++-++.... . ..+.++++.+.+|..-+
T Consensus 185 TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r 264 (571)
T d2ad6a1 185 TGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMR 264 (571)
T ss_dssp TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccc
Confidence 999999876420 0 11356777888887433
Q ss_pred ------CCeEEEEeCCCCcEEEEEEeccC-------CeeeeeceeeEeeCCEE---EEEecCCCeEEEEeCCCCeEEEEE
Q 019103 209 ------SSMLYQIDPQTLKVIRKDIVRYK-------GREVRNLNELEFIKGEV---WANVWQTDCIARISHEDGVVLGWV 272 (346)
Q Consensus 209 ------s~~l~vIDp~T~kvi~~I~V~~~-------G~pv~~lNELE~~~G~L---yaNv~~sn~I~vID~~TG~Vv~~I 272 (346)
++.+.-+|.+|++++=..+...+ ..+. .+..++. +|+. -+-.-....+.++|.+||+.+-..
T Consensus 265 ~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~-~l~~~~~-~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~ 342 (571)
T d2ad6a1 265 PGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQM-VLTDQPV-NGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp CSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCC-EEEEEEE-TTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccccccccceeeeeccchhheecccccCcccccccccccc-ceeeeec-cCccccceeeccccceEEEEecCCCcEeeee
Confidence 67899999999999866654321 1111 1223333 4532 223334678999999999998665
Q ss_pred ECCchhhhhh--------------------h------ccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 273 LLPNLRERLV--------------------A------AGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 273 ~l~~l~~~~~--------------------~------~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+......... . .+...+....+.||||+++.+||-....+..++...
T Consensus 343 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~ 415 (571)
T d2ad6a1 343 KVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFM 415 (571)
T ss_dssp ESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred ccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEecccccccccccc
Confidence 5521100000 0 000122334568999999999998777666655443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.22 E-value=8e-05 Score=66.29 Aligned_cols=152 Identities=11% Similarity=0.043 Sum_probs=102.7
Q ss_pred ceeEEEecCCE-EEEEcCCCCCCeEEEEECCCCcEEEEeccCC--CeeEEEEEE--eCCEEEEEEeeCCEEEEEECCCCc
Q 019103 107 TQGLLYAENDT-LFESTGLYGRSSVRRVALETGKVEAINQMEG--SYFGEGLTL--LGEKLFQVTWLQKTGFIYDQNNLN 181 (346)
Q Consensus 107 TqGL~~~~d~~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~--~~FgeGit~--~g~~LY~ltw~~~~v~V~D~~tl~ 181 (346)
...+.+++++. ++.+.+ .+..|+.||..+++......... ..+-..++. +++.++++.-.++.+.++|.++.+
T Consensus 162 v~~~~~~~~~~~~~~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~ 239 (325)
T d1pgua1 162 INACHLKQSRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 239 (325)
T ss_dssp EEEEEECSSSSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC
T ss_pred cccccccccccceEEEee--cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc
Confidence 46789988774 566666 45699999999999877775421 222334444 345677777788999999999999
Q ss_pred EEEEEecC--CCce--eEEe-eCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCC
Q 019103 182 KLEEFTHQ--MKDG--WGLA-TDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQT 255 (346)
Q Consensus 182 ~i~ti~~~--~peG--wGLt-~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~s 255 (346)
.+.++... ...+ |.++ +||+.|..+..++.|.++|.++.+.++++.+..+......+ .+.+. +++|. +.-.+
T Consensus 240 ~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-s~s~d 317 (325)
T d1pgua1 240 FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV-GVVATGNGRII-SLSLD 317 (325)
T ss_dssp EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE-EEEEEETTEEE-EEETT
T ss_pred ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEE-EEEECCCCEEE-EEECC
Confidence 99998742 1122 3333 68888887667889999999999999999886543222111 12233 34554 44446
Q ss_pred CeEEEEe
Q 019103 256 DCIARIS 262 (346)
Q Consensus 256 n~I~vID 262 (346)
+.|.+-|
T Consensus 318 g~i~vwd 324 (325)
T d1pgua1 318 GTLNFYE 324 (325)
T ss_dssp SCEEEEE
T ss_pred CEEEEEE
Confidence 6776665
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=0.0004 Score=58.72 Aligned_cols=118 Identities=17% Similarity=0.047 Sum_probs=88.0
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEec
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTH 188 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~ 188 (346)
...+..++..+.+++ .+..|+.||+.+++.+....-... .-..++..++.|+.. -.++.+.++|..+.+....+..
T Consensus 180 ~~~~~~~~~~l~s~~--~dg~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~ 255 (342)
T d2ovrb2 180 VYSLQFDGIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQS-LTSGMELKDNILVSG-NADSTVKIWDIKTGQCLQTLQG 255 (342)
T ss_dssp EEEEEECSSEEEEEE--TTSCEEEEETTTCCEEEEECCCCS-CEEEEEEETTEEEEE-ETTSCEEEEETTTCCEEEEECS
T ss_pred cccccCCCCEEEEEe--CCCeEEEeecccceeeeEeccccc-ceeEEecCCCEEEEE-cCCCEEEEEecccccccccccc
Confidence 344555666666666 456999999999998877765433 345678888865554 4578999999999998888864
Q ss_pred C---CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc
Q 019103 189 Q---MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY 230 (346)
Q Consensus 189 ~---~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~ 230 (346)
. ...-..++++++.++.+..+++|.++|.++++.++++....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~ 300 (342)
T d2ovrb2 256 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300 (342)
T ss_dssp TTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECT
T ss_pred cceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEeccc
Confidence 2 22445578899988887678899999999999999887643
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=0.00045 Score=56.98 Aligned_cols=159 Identities=12% Similarity=-0.000 Sum_probs=109.9
Q ss_pred eeE-EEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 108 QGL-LYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 108 qGL-~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
.|+ .++.|+++++|++ .+..|++||+.+++.+..+.-.... --.++.+++.|+. .-.++.+.++|..+.......
T Consensus 16 ~~V~c~~~d~~~l~sgs--~Dg~i~vWd~~~~~~~~~l~~H~~~-V~~v~~~~~~l~s-~s~D~~i~~~~~~~~~~~~~~ 91 (293)
T d1p22a2 16 KGVYCLQYDDQKIVSGL--RDNTIKIWDKNTLECKRILTGHTGS-VLCLQYDERVIIT-GSSDSTVRVWDVNTGEMLNTL 91 (293)
T ss_dssp CCEEEEECCSSEEEEEE--SSSCEEEEESSSCCEEEEECCCSSC-EEEEECCSSEEEE-EETTSCEEEEESSSCCEEEEE
T ss_pred CCEEEEEEcCCEEEEEe--CCCeEEEEECCCCcEEEEEecCCCC-Eeeeecccceeec-ccccccccccccccccccccc
Confidence 355 3566788778877 5569999999999998888643322 2346666665544 446789999999999888888
Q ss_pred ecCCCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEecc-CCeeeeeceeeEeeCCEEEEEecCCCeEEEEeCCC
Q 019103 187 THQMKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRY-KGREVRNLNELEFIKGEVWANVWQTDCIARISHED 265 (346)
Q Consensus 187 ~~~~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~-~G~pv~~lNELE~~~G~LyaNv~~sn~I~vID~~T 265 (346)
................+........+.+.|..+.+......... +...+ ..+.+....++... .+..|.+.|..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~s-~d~~i~~~d~~~ 167 (293)
T d1p22a2 92 IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV---NVVDFDDKYIVSAS-GDRTIKVWNTST 167 (293)
T ss_dssp CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE---EEEEEETTEEEEEE-TTSEEEEEETTT
T ss_pred cccccccccccccccceeecccccceeEeecccccccccccccccccccc---ccceeccccccccc-CCCceeeecCCC
Confidence 76545666677777888887778888999988776554444422 11122 22344455555443 477899999999
Q ss_pred CeEEEEEEC
Q 019103 266 GVVLGWVLL 274 (346)
Q Consensus 266 G~Vv~~I~l 274 (346)
++.+..+.-
T Consensus 168 ~~~~~~~~~ 176 (293)
T d1p22a2 168 CEFVRTLNG 176 (293)
T ss_dssp CCEEEEEEC
T ss_pred CcEEEEEcc
Confidence 999888754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.04 E-value=0.00015 Score=61.17 Aligned_cols=172 Identities=8% Similarity=-0.006 Sum_probs=100.1
Q ss_pred EEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcE----EEEeccCCCeeEEEEEEeCCEEEEEEeeC
Q 019103 94 QVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKV----EAINQMEGSYFGEGLTLLGEKLFQVTWLQ 169 (346)
Q Consensus 94 ~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv----~~~~~l~~~~FgeGit~~g~~LY~ltw~~ 169 (346)
++|+ +...++-....|.|+|++.++.+++ .+..|++||+++++. ..............+...++.+.++--.+
T Consensus 2 ~~v~-~~~~h~d~I~~l~fsp~~~~L~s~s--~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d 78 (342)
T d1yfqa_ 2 QIVQ-IEQAPKDYISDIKIIPSKSLLLITS--WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ 78 (342)
T ss_dssp EEEE-CSSCCSSCEEEEEEEGGGTEEEEEE--TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT
T ss_pred CeEE-cCCCCCCCEEEEEEeCCCCEEEEEE--CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccc
Confidence 5555 3334555678999999998777766 466999999877642 22223344444433344456666666678
Q ss_pred CEEEEEECCCCcEEEEEecC-CCc--eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeee-eceeeEe-e
Q 019103 170 KTGFIYDQNNLNKLEEFTHQ-MKD--GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVR-NLNELEF-I 244 (346)
Q Consensus 170 ~~v~V~D~~tl~~i~ti~~~-~pe--GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~-~lNELE~-~ 244 (346)
+.+.++|..+.......... ... .....+++..++....+..+.++|..+.+......-...+.... ....+.. .
T Consensus 79 ~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
T d1yfqa_ 79 GEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp SCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred cceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec
Confidence 99999999888777776543 112 22234566666665667899999976654433332221111100 0011111 1
Q ss_pred CCEEEEEecCCCeEEEEeCCCCeE
Q 019103 245 KGEVWANVWQTDCIARISHEDGVV 268 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~V 268 (346)
++..++.......|.+.|..+++.
T Consensus 159 ~~~~~~~~~~d~~i~~~~~~~~~~ 182 (342)
T d1yfqa_ 159 NSSRLIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp CSSEEEEEESTTEEEEEESSCCTT
T ss_pred cCCceeeecCCCcEEEEecccCcc
Confidence 333344444567777777776654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.02 E-value=0.00021 Score=66.60 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=111.5
Q ss_pred eeEEEecCCEEEEEcCCC----------CCCeEEEEECCCCcE-EEEeccC------CCeeEEEEEEeC---C--EEEEE
Q 019103 108 QGLLYAENDTLFESTGLY----------GRSSVRRVALETGKV-EAINQME------GSYFGEGLTLLG---E--KLFQV 165 (346)
Q Consensus 108 qGL~~~~d~~LyeStGly----------g~s~V~~iDl~Tgkv-~~~~~l~------~~~FgeGit~~g---~--~LY~l 165 (346)
+=|++.+||.+|.++|+. ....|..+|+++.+- ...+.+. ...-+.|+++.. + +||+.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 458888999999898752 246899999887542 2222221 112358888732 2 68888
Q ss_pred Ee--eCCEE--EEEECCC--CcEEEEEecC---CCceeEEeeCCCEEEEEC-C-----------------CCeEEEEeCC
Q 019103 166 TW--LQKTG--FIYDQNN--LNKLEEFTHQ---MKDGWGLATDGKVLFGSD-G-----------------SSMLYQIDPQ 218 (346)
Q Consensus 166 tw--~~~~v--~V~D~~t--l~~i~ti~~~---~peGwGLt~Dg~~LyvSd-G-----------------s~~l~vIDp~ 218 (346)
+- ...++ |.++... +..++++..+ .|.-..+..|| .+|+|| . ...++..|+.
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence 76 23444 4555444 4455566554 35556666666 577774 1 3356666766
Q ss_pred CCcEEEEEEeccCCeeeeeceeeEee-C-CEEEEEecCCCeEEEEeCCCC---eEEEEEECCchhhhhhhccCCCCceee
Q 019103 219 TLKVIRKDIVRYKGREVRNLNELEFI-K-GEVWANVWQTDCIARISHEDG---VVLGWVLLPNLRERLVAAGYNGIDVLN 293 (346)
Q Consensus 219 T~kvi~~I~V~~~G~pv~~lNELE~~-~-G~LyaNv~~sn~I~vID~~TG---~Vv~~I~l~~l~~~~~~~~~~~~~vlN 293 (346)
+.+++ .. .+...|-+... | .+|||+......|.+.+.... +.+..++++ ..|.
T Consensus 197 ~~~~~----~~----~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~--------------~~pD 254 (340)
T d1v04a_ 197 DVRVV----AE----GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD--------------TLVD 254 (340)
T ss_dssp CEEEE----EE----EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS--------------SEEE
T ss_pred ceEEE----cC----CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCC--------------CCCC
Confidence 53332 21 24466877775 3 489999999999988776533 333444441 2578
Q ss_pred EEEEeCCCCEEEEec
Q 019103 294 GIAWDSNRNRIFVTG 308 (346)
Q Consensus 294 GIA~d~~~~~LfVTG 308 (346)
+|.+|+++..+|+++
T Consensus 255 Ni~~d~~~g~lwva~ 269 (340)
T d1v04a_ 255 NISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEECTTTCCEEEEE
T ss_pred ccEEecCCCEEEEEE
Confidence 899999888899985
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.00 E-value=0.00015 Score=61.86 Aligned_cols=137 Identities=14% Similarity=0.127 Sum_probs=87.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEEe
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFT 187 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~ 187 (346)
..+.+++++..+.+.+ .+..|+++|..+++.+....-.... -..++..++.|+.. -.++.+.++|.++.+..-+..
T Consensus 205 ~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~h~~~-v~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~ 280 (355)
T d1nexb2 205 YSTIYDHERKRCISAS--MDTTIRIWDLENGELMYTLQGHTAL-VGLLRLSDKFLVSA-AADGSIRGWDANDYSRKFSYH 280 (355)
T ss_dssp EEEEEETTTTEEEEEE--TTSCEEEEETTTCCEEEEECCCSSC-CCEEEECSSEEEEE-CTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccccceeeeccc--ccceEEeeecccccccccccccccc-ccccccccceeeee-ecccccccccccccceecccc
Confidence 6778888776555555 4568999999999988877643332 23466667665544 457899999999988776665
Q ss_pred cCCCcee-EEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEec
Q 019103 188 HQMKDGW-GLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVW 253 (346)
Q Consensus 188 ~~~peGw-GLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~ 253 (346)
....... .+.++++.|..+ .+++|.++|.+|++.+.....+ +..++ +.+.+.+..+.++..
T Consensus 281 ~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~-~~~~V---~~v~~~~~~~~~~~s 342 (355)
T d1nexb2 281 HTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILK-DADQI---WSVNFKGKTLVAAVE 342 (355)
T ss_dssp CTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTT-TCSEE---EEEEEETTEEEEEEE
T ss_pred cCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecC-CCCCE---EEEEEcCCeEEEEEE
Confidence 4322222 245566655443 3679999999999876443222 12232 235555555555443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.00 E-value=0.00044 Score=68.91 Aligned_cols=209 Identities=13% Similarity=0.091 Sum_probs=133.7
Q ss_pred ceeEEEecCC-----EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEE----EEeCCEEEEEEee-----CCEE
Q 019103 107 TQGLLYAEND-----TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGL----TLLGEKLFQVTWL-----QKTG 172 (346)
Q Consensus 107 TqGL~~~~d~-----~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGi----t~~g~~LY~ltw~-----~~~v 172 (346)
.+|+++.++. ++|.++. +..|..+|.+|||++-........-+..+ .+.++++|+.+.. .+.|
T Consensus 108 ~RGv~~~~~~~~~~~~v~~~t~---dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v 184 (596)
T d1w6sa_ 108 NRGLAYWPGDGKTPALILKTQL---DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYL 184 (596)
T ss_dssp CCCCEEECCCSSSCCEEEEECT---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEE
T ss_pred cceeEEecCCCCCceEEEEEeC---CCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCce
Confidence 3788887543 5887765 35999999999999888755322112222 3578999997653 4889
Q ss_pred EEEECCCCcEEEEEecC-------------------------------------CCcee---EEeeCCCEEEEECC----
Q 019103 173 FIYDQNNLNKLEEFTHQ-------------------------------------MKDGW---GLATDGKVLFGSDG---- 208 (346)
Q Consensus 173 ~V~D~~tl~~i~ti~~~-------------------------------------~peGw---GLt~Dg~~LyvSdG---- 208 (346)
..||++|++++-++... .+..| .+++..+.+|+.-|
T Consensus 185 ~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p 264 (596)
T d1w6sa_ 185 TAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAP 264 (596)
T ss_dssp EEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSC
T ss_pred EEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccc
Confidence 99999999999987642 01123 34556778888532
Q ss_pred ------------CCeEEEEeCCCCcEEEEEEeccC-----CeeeeeceeeEe--eCCE---EEEEecCCCeEEEEeCCCC
Q 019103 209 ------------SSMLYQIDPQTLKVIRKDIVRYK-----GREVRNLNELEF--IKGE---VWANVWQTDCIARISHEDG 266 (346)
Q Consensus 209 ------------s~~l~vIDp~T~kvi~~I~V~~~-----G~pv~~lNELE~--~~G~---LyaNv~~sn~I~vID~~TG 266 (346)
++.|.-+|++|++++=..+...+ ..+ ..+.-.+. .+|+ +.+..-....+.++|.+||
T Consensus 265 ~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~-~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG 343 (596)
T d1w6sa_ 265 WNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGV-NVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343 (596)
T ss_dssp SCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCC-CCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccccccccccccccccccccceeccccCCccc-cceeeeeccccccccccceeccccccceeeecCCCC
Confidence 56799999999999866655321 011 11111222 2442 3444445678999999999
Q ss_pred eEEEEEECCchh------------h----hhhh----------ccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 267 VVLGWVLLPNLR------------E----RLVA----------AGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 267 ~Vv~~I~l~~l~------------~----~~~~----------~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+++.......-. + .... .+...+....+.||||+.+.+||...+++..++...
T Consensus 344 ~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~ 422 (596)
T d1w6sa_ 344 ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFM 422 (596)
T ss_dssp CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECC
T ss_pred ceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccc
Confidence 988655442100 0 0000 001123345788999999999999888887766543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.99 E-value=7e-05 Score=74.38 Aligned_cols=149 Identities=11% Similarity=0.110 Sum_probs=103.8
Q ss_pred EeCCEEEEEEeeCCEEEEEEC-CCCcEEEEEecCCCce-----------eEEeeCCCEEEEECCCCeEEEEeCCCCcEEE
Q 019103 157 LLGEKLFQVTWLQKTGFIYDQ-NNLNKLEEFTHQMKDG-----------WGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (346)
Q Consensus 157 ~~g~~LY~ltw~~~~v~V~D~-~tl~~i~ti~~~~peG-----------wGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~ 224 (346)
+.++.+|+.+-.++.++.+|+ +|++++-++..+.+.+ -|++..++++|+.+.+..|+-+|.+|+++.-
T Consensus 60 v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 60 VIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhhhhc
Confidence 468999999876788999997 5899999986431111 2355567899999888999999999999988
Q ss_pred EEEeccC--CeeeeeceeeEeeCCEEEEEecC-----CCeEEEEeCCCCeEEEEEECCchhhhh----------------
Q 019103 225 KDIVRYK--GREVRNLNELEFIKGEVWANVWQ-----TDCIARISHEDGVVLGWVLLPNLRERL---------------- 281 (346)
Q Consensus 225 ~I~V~~~--G~pv~~lNELE~~~G~LyaNv~~-----sn~I~vID~~TG~Vv~~I~l~~l~~~~---------------- 281 (346)
+..+.+. +..+. ..--+.++.||+.... ...|..+|.+||+++=+.+...-....
T Consensus 140 ~~~~~~~~~~~~~t--~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~ 217 (571)
T d2ad6a1 140 EVEVCDPKVGSTLT--QAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCC--SCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred ccccccccccccee--ecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8777542 11111 1112458899987653 567999999999998877653211100
Q ss_pred --hhc-------cCCCCceeeEEEEeCCCCEEEEe
Q 019103 282 --VAA-------GYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 282 --~~~-------~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
... ......+...+++|++++.+|+.
T Consensus 218 ~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~ 252 (571)
T d2ad6a1 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYG 252 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEE
T ss_pred cccccccCCcccccCCCccccccccchhcCeeeee
Confidence 000 01234577889999999988853
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.96 E-value=0.00028 Score=64.08 Aligned_cols=123 Identities=13% Similarity=0.044 Sum_probs=87.7
Q ss_pred CCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCC-------CeeEEEEEEeCCEEEEEEeeC--CEEE
Q 019103 103 PRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEG-------SYFGEGLTLLGEKLFQVTWLQ--KTGF 173 (346)
Q Consensus 103 ~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~-------~~FgeGit~~g~~LY~ltw~~--~~v~ 173 (346)
...|...++|++|+.| .+.+ .+..|++||+.+++.+....... ......++++++.|....... ..+.
T Consensus 183 ~~~~~~~v~~s~dg~l-asgs--~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~ 259 (393)
T d1sq9a_ 183 PSQFATSVDISERGLI-ATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 259 (393)
T ss_dssp SCCCCCEEEECTTSEE-EEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred CCCcEEEEEECCCCEE-EEEe--CCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceee
Confidence 3455577899998844 4444 45699999999999877765432 233333444677777765544 3588
Q ss_pred EEECCCCcEEEEEecC--------CC-------ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019103 174 IYDQNNLNKLEEFTHQ--------MK-------DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 174 V~D~~tl~~i~ti~~~--------~p-------eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
++|.++++.+.++... .. ....++|||+.|+.+..+.+|.++|.++++.+.++.-
T Consensus 260 lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~g 329 (393)
T d1sq9a_ 260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM 329 (393)
T ss_dssp EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred ecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECC
Confidence 8999999999988531 01 1245678999888777789999999999999888764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.94 E-value=0.00038 Score=68.60 Aligned_cols=198 Identities=12% Similarity=0.058 Sum_probs=122.3
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC----------CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQME----------GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~----------~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
||++|++++ ...|..+|.+||+++=+.... ......|++..++++|+.+. ++.++.+|++|++++.
T Consensus 66 ~g~vyv~t~---~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~l~Alda~tG~~~w 141 (560)
T d1kv9a2 66 DGVIYTSMS---WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-DGRLIALDAKTGKAIW 141 (560)
T ss_dssp TTEEEEEEG---GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-TSEEEEEETTTCCEEE
T ss_pred CCEEEEECC---CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-CCEEEEEECCCCcEEe
Confidence 689999986 359999999999998665321 12234567888999999875 5789999999999999
Q ss_pred EEecC-CCceeEEee----CCCEEEE-ECC-----CCeEEEEeCCCCcEEEEEEeccC--Ce------------------
Q 019103 185 EFTHQ-MKDGWGLAT----DGKVLFG-SDG-----SSMLYQIDPQTLKVIRKDIVRYK--GR------------------ 233 (346)
Q Consensus 185 ti~~~-~peGwGLt~----Dg~~Lyv-SdG-----s~~l~vIDp~T~kvi~~I~V~~~--G~------------------ 233 (346)
++... ...++.++. .+..+++ +.+ ...|+-+|++|++++=+..+... +.
T Consensus 142 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (560)
T d1kv9a2 142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (560)
T ss_dssp EEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccc
Confidence 98763 234444432 2455566 322 34799999999999977765321 11
Q ss_pred --------eeeeceeeEeeCCEEEEEec------------------CCCeEEEEeCCCCeEEEEEECCchhhhhhhccCC
Q 019103 234 --------EVRNLNELEFIKGEVWANVW------------------QTDCIARISHEDGVVLGWVLLPNLRERLVAAGYN 287 (346)
Q Consensus 234 --------pv~~lNELE~~~G~LyaNv~------------------~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~ 287 (346)
.+...--++...+.+|+..- .++.|+.+|++||+++-.... ....+.+-..+
T Consensus 222 ~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~--~~~D~wd~d~~ 299 (560)
T d1kv9a2 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV--TPGDSWDFTAT 299 (560)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES--STTCCSCCCCC
T ss_pred cccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEec--ccccccccccc
Confidence 11100011222456775221 278999999999998765533 11111110012
Q ss_pred CCceeeEEEEeCCCCEEEEecCCCCcEEEEE
Q 019103 288 GIDVLNGIAWDSNRNRIFVTGKLWPKLYEIN 318 (346)
Q Consensus 288 ~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~ 318 (346)
....|-.|..+.+...+.+.+...+.+|-+.
T Consensus 300 ~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lD 330 (560)
T d1kv9a2 300 QQITLAELNIDGKPRKVLMQAPKNGFFYVLD 330 (560)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEE
T ss_pred ceeeeeeeecCCceeeeeeecCccceEEEEe
Confidence 2234445555544445555566667676554
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=0.00057 Score=58.19 Aligned_cols=142 Identities=14% Similarity=0.091 Sum_probs=93.5
Q ss_pred eEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe--CCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 109 GLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL--GEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 109 GL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~--g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
...+.+++.++++++ .+..|.+||+.+++.+..+.-.... -..++.. ++.| ++.-.++.+.++|..+.+.+.++
T Consensus 189 ~~~~~~~~~~~~~~~--~d~~v~i~d~~~~~~~~~~~~h~~~-i~~v~~~p~~~~l-~s~s~d~~i~~~~~~~~~~~~~~ 264 (340)
T d1tbga_ 189 SLSLAPDTRLFVSGA--CDASAKLWDVREGMCRQTFTGHESD-INAICFFPNGNAF-ATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp EEEECTTSSEEEEEE--TTTEEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEE
T ss_pred eeccccccceeEEee--cCceEEEEECCCCcEEEEEeCCCCC-eEEEEECCCCCEE-EEEeCCCeEEEEeeccccccccc
Confidence 344445566777766 5569999999999988877643322 2234443 4444 44456889999999999998888
Q ss_pred ecC-CC---ceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CCEEEEEecCCCeEE
Q 019103 187 THQ-MK---DGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KGEVWANVWQTDCIA 259 (346)
Q Consensus 187 ~~~-~p---eGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G~LyaNv~~sn~I~ 259 (346)
... .. ....+++|++.|++...++.|.++|..+++.+.++.-.. .++ +.+.+. +|...|+.-.++.|.
T Consensus 265 ~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~--~~V---~~l~~s~d~~~l~s~s~Dg~v~ 337 (340)
T d1tbga_ 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRV---SCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCE---EEEEECTTSSCEEEEETTSCEE
T ss_pred ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC--CCE---EEEEEeCCCCEEEEEccCCEEE
Confidence 653 11 234467899999987778899999999999887775422 233 345554 454444443344443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.89 E-value=0.00011 Score=72.67 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=103.9
Q ss_pred EEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCC-----------CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEE
Q 019103 156 TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQM-----------KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (346)
Q Consensus 156 t~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~-----------peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~ 224 (346)
.+.+++||+.+.. +.++.+|++|++++-+++.+. ....+++..++++|+.+.+..|+-+|.+|++++-
T Consensus 63 iv~~g~vyv~t~~-~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w 141 (560)
T d1kv9a2 63 LFHDGVIYTSMSW-SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIW 141 (560)
T ss_dssp EEETTEEEEEEGG-GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEECCEEEEECCC-CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEe
Confidence 4578999999864 789999999999999985321 1223455568899999989999999999999998
Q ss_pred EEEeccCCeeeeecee-eEeeCCEEEEEecCC-----CeEEEEeCCCCeEEEEEECCchhhhhh----------hc----
Q 019103 225 KDIVRYKGREVRNLNE-LEFIKGEVWANVWQT-----DCIARISHEDGVVLGWVLLPNLRERLV----------AA---- 284 (346)
Q Consensus 225 ~I~V~~~G~pv~~lNE-LE~~~G~LyaNv~~s-----n~I~vID~~TG~Vv~~I~l~~l~~~~~----------~~---- 284 (346)
+..+.+...... ... -.+.+|.+++..... ..|..+|.+||+++=+.++..-.+..+ ..
T Consensus 142 ~~~~~~~~~~~~-~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 220 (560)
T d1kv9a2 142 SQQTTDPAKPYS-ITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (560)
T ss_dssp EEECSCTTSSCB-CCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred ccCccCccccee-eeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccc
Confidence 877754211111 111 224578888755433 469999999999998887632111000 00
Q ss_pred ----cCCCCceeeEEEEeCCCCEEEE
Q 019103 285 ----GYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 285 ----~~~~~~vlNGIA~d~~~~~LfV 306 (346)
......+..++++|++.+.+|+
T Consensus 221 ~~~~~~~G~~~W~~~s~D~~~~l~y~ 246 (560)
T d1kv9a2 221 QYWKLGGGGTVWDSMAYDPELDLLYV 246 (560)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEE
T ss_pred ccccccCCCCcccccccccccCeeee
Confidence 0013457888999999999986
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.81 E-value=0.00038 Score=63.15 Aligned_cols=194 Identities=12% Similarity=0.056 Sum_probs=120.8
Q ss_pred EEEEEcCCCCCCeEEEEECCCCc---------------EEEEe--ccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCC
Q 019103 117 TLFESTGLYGRSSVRRVALETGK---------------VEAIN--QMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNN 179 (346)
Q Consensus 117 ~LyeStGlyg~s~V~~iDl~Tgk---------------v~~~~--~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~t 179 (346)
..+.+++ .+..+.+||+.... ..... ......|...++...+.+.++--.++.+.++|..+
T Consensus 137 ~~~~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~ 214 (393)
T d1sq9a_ 137 HRLVATD--VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELST 214 (393)
T ss_dssp EEEEEEE--TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTT
T ss_pred cEEEEEc--CCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecc
Confidence 4566666 34588888864221 11111 12233445556665554445556789999999999
Q ss_pred CcEEEEEecC-----CC---ceeEEeeCCCEEEEE-C-CC-CeEEEEeCCCCcEEEEEEeccCCe-e----ee---ecee
Q 019103 180 LNKLEEFTHQ-----MK---DGWGLATDGKVLFGS-D-GS-SMLYQIDPQTLKVIRKDIVRYKGR-E----VR---NLNE 240 (346)
Q Consensus 180 l~~i~ti~~~-----~p---eGwGLt~Dg~~LyvS-d-Gs-~~l~vIDp~T~kvi~~I~V~~~G~-p----v~---~lNE 240 (346)
++.+.+++.. .. ....++|||+.|+.. + ++ ..|.++|+++.+.+.++....... . .. .++.
T Consensus 215 ~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~ 294 (393)
T d1sq9a_ 215 LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMS 294 (393)
T ss_dssp TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEE
T ss_pred cccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceee
Confidence 9999888642 11 234477899999884 3 33 368999999999998886533111 0 01 1334
Q ss_pred eEee-CCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEEEEE
Q 019103 241 LEFI-KGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYEINL 319 (346)
Q Consensus 241 LE~~-~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~ev~l 319 (346)
+.+. ||++.|+.-.+.+|-+=|.++|+.+.++.-.. . +-...-.+++++++++.+ +++. ++.+++
T Consensus 295 l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~------~---~v~~~~~~~~~~~~~~~~-~~~~----~~~~~~ 360 (393)
T d1sq9a_ 295 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC------D---DIEIEEDILAVDEHGDSL-AEPG----VFDVKF 360 (393)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG------G---GCSSGGGCCCBCTTSCBC-SSCC----EEEEEE
T ss_pred eccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcC------C---cccCCccEEEECCCCCEE-EEcc----cceEEE
Confidence 5554 67777777778999999999999999985311 0 111233467899888765 4554 556666
Q ss_pred eeccccc
Q 019103 320 REMKRER 326 (346)
Q Consensus 320 ~~~~~~~ 326 (346)
.+.....
T Consensus 361 ~~~~~~~ 367 (393)
T d1sq9a_ 361 LKKGWRS 367 (393)
T ss_dssp ECTTTSB
T ss_pred CccCcee
Confidence 6544333
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.73 E-value=0.0025 Score=59.02 Aligned_cols=189 Identities=12% Similarity=0.124 Sum_probs=110.0
Q ss_pred ceeEEEe--cCC--EEEEEcCCCCCCeEEEEECCC--CcEE--EEeccCCCeeEEEEEEe-CCEEEEEEee---------
Q 019103 107 TQGLLYA--END--TLFESTGLYGRSSVRRVALET--GKVE--AINQMEGSYFGEGLTLL-GEKLFQVTWL--------- 168 (346)
Q Consensus 107 TqGL~~~--~d~--~LyeStGlyg~s~V~~iDl~T--gkv~--~~~~l~~~~FgeGit~~-g~~LY~ltw~--------- 168 (346)
..||.+. .|| +||+.+-.++.++|.++++.. .++. ..+.-+.-.+.--++.. .+.+|+.+.-
T Consensus 99 PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~ 178 (340)
T d1v04a_ 99 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS 178 (340)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHH
T ss_pred ccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhh
Confidence 3788774 455 588776444677888887653 3333 22333444555666664 4788988631
Q ss_pred --------CCEEEEEECCCCcEEEEEecCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCC-c--EEEEEEeccCCeeee
Q 019103 169 --------QKTGFIYDQNNLNKLEEFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTL-K--VIRKDIVRYKGREVR 236 (346)
Q Consensus 169 --------~~~v~V~D~~tl~~i~ti~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~-k--vi~~I~V~~~G~pv~ 236 (346)
.+.++-+|.++.+++.+= ...|.|.++++|++.|||++ ...+|++++...- + ....+.+ .|.| .
T Consensus 179 ~e~~~~~~~g~v~~~~~~~~~~~~~~-l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l--~~~p-D 254 (340)
T d1v04a_ 179 WEMHLGLAWSFVTYYSPNDVRVVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF--DTLV-D 254 (340)
T ss_dssp HHHHTTCCCEEEEEECSSCEEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC--SSEE-E
T ss_pred hhHhhcCCceeEEEEcCCceEEEcCC-CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC--CCCC-C
Confidence 234566677665554431 22589999999999999998 5888887765432 2 2233333 3333 2
Q ss_pred eceeeEe--eCCEEEEEecCCC--------------eEEEE---eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEE
Q 019103 237 NLNELEF--IKGEVWANVWQTD--------------CIARI---SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAW 297 (346)
Q Consensus 237 ~lNELE~--~~G~LyaNv~~sn--------------~I~vI---D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~ 297 (346)
| +.+ .+|.+|+...... .+.+| +.++++++..+.-.+ . . .. . --.|.
T Consensus 255 --N-i~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~~~~~~~~v~~~~~~~G-~-~-----~~---~-~T~a~ 320 (340)
T d1v04a_ 255 --N-ISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENG-T-V-----LQ---G-STVAA 320 (340)
T ss_dssp --E-EEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEECS-S-S-----SC---S-EEEEE
T ss_pred --c-cEEecCCCEEEEEECCcccchhhhcccCCCCceeEEEEeccCCCCeEEEEEeCCC-c-E-----ee---c-eEEEE
Confidence 2 444 3678998865311 24454 467787776664311 0 0 00 0 11233
Q ss_pred eCCCCEEEEecCCCCcE
Q 019103 298 DSNRNRIFVTGKLWPKL 314 (346)
Q Consensus 298 d~~~~~LfVTGK~Wp~l 314 (346)
+.+++|||.+=.-+.|
T Consensus 321 -~~~g~L~iGs~~~~~l 336 (340)
T d1v04a_ 321 -VYKGKLLIGTVFHKAL 336 (340)
T ss_dssp -EETTEEEEEESSSCEE
T ss_pred -EECCEEEEEeeeCCce
Confidence 4578999986555544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.69 E-value=0.00046 Score=58.97 Aligned_cols=118 Identities=12% Similarity=0.022 Sum_probs=77.5
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEecc--CCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQM--EGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEE 185 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l--~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~t 185 (346)
..+.+++|+.++.+.+ .+..|.+||+.+++......+ +.......+..+++.|+ +.-.++.+.++|..+.+.+..
T Consensus 140 ~~~~~s~~~~~l~~g~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 140 SCVALSNDKQFVAVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV-ATDQSRKVIPYSVANNFELAH 216 (299)
T ss_dssp EEEEECTTSCEEEEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE-EEETTSCEEEEEGGGTTEESC
T ss_pred cccccccccccccccc--cccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence 5788899887666655 456999999999886554433 33333322223344444 445578899999988776655
Q ss_pred Eec----CC-CceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEe
Q 019103 186 FTH----QM-KDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 186 i~~----~~-peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V 228 (346)
... .. -....+++|++.|++...++.|.++|.++.+....+..
T Consensus 217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~ 264 (299)
T d1nr0a2 217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264 (299)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET
T ss_pred cccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEe
Confidence 432 11 13345678999988876678999999988765444433
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.60 E-value=0.0034 Score=53.06 Aligned_cols=185 Identities=9% Similarity=0.032 Sum_probs=115.5
Q ss_pred CcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 105 AFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 105 ~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
....++.+.+++. +.+.+ .+.+|+.+|..+. .++..+ ..+...++..+++...++.+.+++..+.+.+.
T Consensus 47 ~~V~~~~~~~~~~-~~s~s--~D~~v~~w~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (287)
T d1pgua2 47 NLIVSLDNSKAQE-YSSIS--WDDTLKVNGITKH------EFGSQP--KVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115 (287)
T ss_dssp SCEEEEECCSTTC-CEEEE--TTTEEEETTEEEE------ECSSCE--EEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCEEEEEecCCCe-EEEEe--ecccccccccccc------ccccce--eeeeeccCCceEEEeecccceeeeccceeeee
Confidence 3446788876544 45656 3458888876543 233333 23455555455556678889999999999999
Q ss_pred EEecCCCceeEEeeCCCEEEEEC-CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EEEEEecCCCeEEEE
Q 019103 185 EFTHQMKDGWGLATDGKVLFGSD-GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EVWANVWQTDCIARI 261 (346)
Q Consensus 185 ti~~~~peGwGLt~Dg~~LyvSd-Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~LyaNv~~sn~I~vI 261 (346)
++... .....++++++.+.++- .++.+.++|..+.+..........+ + ..-+.+. +| +|.+.. .+..|.+.
T Consensus 116 ~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~---v~~~~~s~~~~~l~~g~-~dg~i~i~ 189 (287)
T d1pgua2 116 SVRLN-SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRA-K---PSYISISPSETYIAAGD-VMGKILLY 189 (287)
T ss_dssp EEECS-SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSS-C---EEEEEECTTSSEEEEEE-TTSCEEEE
T ss_pred ecccc-ceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCC-c---eeEEEeccCcccccccc-ccccccce
Confidence 99886 46678899999887754 4568999998765544333221111 2 2235554 45 454444 57789999
Q ss_pred eCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCC---------EEEEecCCCCcEEEEE
Q 019103 262 SHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRN---------RIFVTGKLWPKLYEIN 318 (346)
Q Consensus 262 D~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~---------~LfVTGK~Wp~l~ev~ 318 (346)
|..+++.+...-. .-....+.++|+|.+. .+++||-...+++--.
T Consensus 190 d~~~~~~~~~~~~------------~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~ 243 (287)
T d1pgua2 190 DLQSREVKTSRWA------------FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYS 243 (287)
T ss_dssp ETTTTEEEECCSC------------CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEE
T ss_pred eeccccccccccc------------ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEE
Confidence 9999987543210 0012357788887653 4677776666655443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.56 E-value=0.0011 Score=55.64 Aligned_cols=217 Identities=10% Similarity=-0.083 Sum_probs=117.3
Q ss_pred eEEEEEEecCCCCcceeEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEE-EEEeCCEEEEEEeeCC
Q 019103 93 IQVVNEFPHDPRAFTQGLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEG-LTLLGEKLFQVTWLQK 170 (346)
Q Consensus 93 ~~Vv~t~phd~~~FTqGL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeG-it~~g~~LY~ltw~~~ 170 (346)
.++...+.|... ...+.|.+++ .++.+++ .+..|.+||..++................ ....++..++..-.++
T Consensus 47 ~~~~~~~~h~~~--V~~v~f~~~~~~~l~sg~--~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (342)
T d1yfqa_ 47 VDLLQSLRYKHP--LLCCNFIDNTDLQIYVGT--VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122 (342)
T ss_dssp EEEEEEEECSSC--EEEEEEEESSSEEEEEEE--TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTS
T ss_pred eEEEEecCCCCC--EEEEEEeCCCCCEEEEcc--cccceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 455666677433 3689998764 6677766 45699999999987766665443322222 2334555666667788
Q ss_pred EEEEEECCCCcEEEEEec----C----CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeE
Q 019103 171 TGFIYDQNNLNKLEEFTH----Q----MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELE 242 (346)
Q Consensus 171 ~v~V~D~~tl~~i~ti~~----~----~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE 242 (346)
.+.++|..+......... . ......+.++++.+++...+..|.++|..+.+....................-
T Consensus 123 ~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (342)
T d1yfqa_ 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL 202 (342)
T ss_dssp EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred ccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEee
Confidence 999999765544333321 1 12334567788888887778899999987766544333322100000000011
Q ss_pred eeCCEEEEEecCCCeEEEEeCCCCeEEE------EEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 243 FIKGEVWANVWQTDCIARISHEDGVVLG------WVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 243 ~~~G~LyaNv~~sn~I~vID~~TG~Vv~------~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
..++..++.....+.+.+.+........ ......... .........++|||+|+++.| +||-...+|+-
T Consensus 203 ~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~l~~sp~~~~l-asg~~Dg~v~v 277 (342)
T d1yfqa_ 203 PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL----KDTNLAYPVNSIEFSPRHKFL-YTAGSDGIISC 277 (342)
T ss_dssp SGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT----TCCSSCCCEEEEEECTTTCCE-EEEETTSCEEE
T ss_pred cCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeecc----CCCcccccceeEEecCCccEE-EEECCCCEEEE
Confidence 1133444444445555555544332110 110000000 000112346899999998865 55555566554
Q ss_pred EE
Q 019103 317 IN 318 (346)
Q Consensus 317 v~ 318 (346)
=.
T Consensus 278 WD 279 (342)
T d1yfqa_ 278 WN 279 (342)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.50 E-value=0.0003 Score=69.55 Aligned_cols=150 Identities=13% Similarity=0.087 Sum_probs=97.4
Q ss_pred EEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCc---------eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEE
Q 019103 156 TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD---------GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKD 226 (346)
Q Consensus 156 t~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~pe---------GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I 226 (346)
.+.++.||+.+. +++|+.+|++|++++-++....+. .-|++..++++|+...+..|+-+|++|++++=+.
T Consensus 65 iv~~g~vy~~t~-~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~~W~~ 143 (582)
T d1flga_ 65 IVSDGVIYVTAS-YSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp EEETTEEEEEET-TTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred EEECCEEEEeCC-CCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEecccccceeeee
Confidence 457899999986 488999999999999998653111 1245556789999888889999999999998777
Q ss_pred EeccCC--eeeeeceeeEeeC----CEEEEEe------cCCCeEEEEeCCCCeEEEEEECCchh------------hhh-
Q 019103 227 IVRYKG--REVRNLNELEFIK----GEVWANV------WQTDCIARISHEDGVVLGWVLLPNLR------------ERL- 281 (346)
Q Consensus 227 ~V~~~G--~pv~~lNELE~~~----G~LyaNv------~~sn~I~vID~~TG~Vv~~I~l~~l~------------~~~- 281 (346)
.+.+.+ ....... .-+.+ +.+++.. .....|..+|++||+.+=+.....-. ...
T Consensus 144 ~~~~~~~~~~~~~~p-~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~ 222 (582)
T d1flga_ 144 KFADHGAGYTMTGAP-TIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp ECSCGGGTCBCCSCC-EEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred cccCCCccceeecCc-eEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccc
Confidence 775431 1111100 11122 2334332 12456999999999998776552100 000
Q ss_pred -----hh----------ccCCCCceeeEEEEeCCCCEEEEe
Q 019103 282 -----VA----------AGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 282 -----~~----------~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
.+ -.....++..++++|++.+.+|+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~ 263 (582)
T d1flga_ 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVG 263 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEE
T ss_pred cccCCCccccccCCccceecCCCcccccceeccccceEEec
Confidence 00 001235577889999999999973
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.45 E-value=0.001 Score=65.57 Aligned_cols=150 Identities=13% Similarity=0.078 Sum_probs=100.1
Q ss_pred EEeCCEEEEEEeeCCEEEEEECCCCcEEEEEecCCCc-----------eeEEeeCCCEEEEECCCCeEEEEeCCCCcEEE
Q 019103 156 TLLGEKLFQVTWLQKTGFIYDQNNLNKLEEFTHQMKD-----------GWGLATDGKVLFGSDGSSMLYQIDPQTLKVIR 224 (346)
Q Consensus 156 t~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti~~~~pe-----------GwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~ 224 (346)
.+.+++||+.+.. +.|+.+|++|++++-+++...+. .-+++..++++|+...+..|+-+|++|++++-
T Consensus 74 iv~~g~vyv~t~~-~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W 152 (573)
T d1kb0a2 74 VVVDGIMYVSASW-SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVW 152 (573)
T ss_dssp EEETTEEEEECGG-GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEECCEEEEECCC-CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeecccccccee
Confidence 3568999998864 67999999999999998643111 12344557788998888899999999999987
Q ss_pred EEEeccCCee-eeeceeeEeeCCEEEEEecC-----CCeEEEEeCCCCeEEEEEECCchhhhhh---------hc-----
Q 019103 225 KDIVRYKGRE-VRNLNELEFIKGEVWANVWQ-----TDCIARISHEDGVVLGWVLLPNLRERLV---------AA----- 284 (346)
Q Consensus 225 ~I~V~~~G~p-v~~lNELE~~~G~LyaNv~~-----sn~I~vID~~TG~Vv~~I~l~~l~~~~~---------~~----- 284 (346)
+..+.+.... +....---+.++.|++-.+. ...|..+|.+||+.+=+.+...-.+... ..
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~ 232 (573)
T d1kb0a2 153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (573)
T ss_dssp EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCC
Confidence 7666442111 11111123458888875432 3479999999999998887632111100 00
Q ss_pred -----cCCCCceeeEEEEeCCCCEEEE
Q 019103 285 -----GYNGIDVLNGIAWDSNRNRIFV 306 (346)
Q Consensus 285 -----~~~~~~vlNGIA~d~~~~~LfV 306 (346)
......+...+++|++.+.+|+
T Consensus 233 ~~~~~~~~G~~vW~~~s~D~~~g~~~~ 259 (573)
T d1kb0a2 233 GKWWEAGGGGTMWDSMTFDAELNTMYV 259 (573)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEE
T ss_pred CceeecCCCCcccccceEchhhCeeee
Confidence 0011345566899999998885
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.39 E-value=0.0032 Score=62.49 Aligned_cols=151 Identities=11% Similarity=0.014 Sum_probs=100.8
Q ss_pred EeCCEEEEEEeeCCEEEEEEC-CCCcEEEEEecCCC-------------ceeEEeeC----CCEEEEECCCCeEEEEeCC
Q 019103 157 LLGEKLFQVTWLQKTGFIYDQ-NNLNKLEEFTHQMK-------------DGWGLATD----GKVLFGSDGSSMLYQIDPQ 218 (346)
Q Consensus 157 ~~g~~LY~ltw~~~~v~V~D~-~tl~~i~ti~~~~p-------------eGwGLt~D----g~~LyvSdGs~~l~vIDp~ 218 (346)
+.++.||+.+-..+.++.+|. +|++++-+++...+ -|.++-.+ +.++|+...+..|+-||.+
T Consensus 60 v~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~ 139 (596)
T d1w6sa_ 60 VVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (596)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred EECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccc
Confidence 568999998766688999996 68999999864311 23344332 3478988888999999999
Q ss_pred CCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC-----CCeEEEEeCCCCeEEEEEECCchhhhh------------
Q 019103 219 TLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ-----TDCIARISHEDGVVLGWVLLPNLRERL------------ 281 (346)
Q Consensus 219 T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~-----sn~I~vID~~TG~Vv~~I~l~~l~~~~------------ 281 (346)
|++++-+..+.+..........--+.++.||+-... ...|..+|.+||+++=+.....-.+..
T Consensus 140 tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~ 219 (596)
T d1w6sa_ 140 TGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (596)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred cCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccc
Confidence 999998877654211100001122568899986542 478999999999998766542210000
Q ss_pred ------h------h-ccCCCCceeeEEEEeCCCCEEEEe
Q 019103 282 ------V------A-AGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 282 ------~------~-~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
. + .......+..++++|++.+.+|+.
T Consensus 220 ~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~ 258 (596)
T d1w6sa_ 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFG 258 (596)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEE
T ss_pred ccccccccccCCCCceecCCCccccccccccCCCeeecc
Confidence 0 0 001235578889999999999874
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.39 E-value=0.0085 Score=58.79 Aligned_cols=110 Identities=19% Similarity=0.222 Sum_probs=76.7
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEecc--CC------CeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEEEE
Q 019103 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQM--EG------SYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLEEF 186 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l--~~------~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ti 186 (346)
||+||++++ .+.|..+|++|||++=+... +. .....|+++.++++|+.+. ++.++.+|++|++++-+.
T Consensus 68 ~g~vy~~t~---~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~-~~~l~alda~tG~~~W~~ 143 (582)
T d1flga_ 68 DGVIYVTAS---YSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-DASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEEEEET---TTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-TTEEEEEESSSCCEEEEE
T ss_pred CCEEEEeCC---CCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecC-CCeEEEecccccceeeee
Confidence 689999987 35999999999999866432 11 1223578889999999876 478999999999999776
Q ss_pred ecC-CCcee------EEeeC---CCEEEEEC-------CCCeEEEEeCCCCcEEEEEEe
Q 019103 187 THQ-MKDGW------GLATD---GKVLFGSD-------GSSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 187 ~~~-~peGw------GLt~D---g~~LyvSd-------Gs~~l~vIDp~T~kvi~~I~V 228 (346)
... ...+. .+..+ ++.+++.. ....|+-+|++|++++=+...
T Consensus 144 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~ 202 (582)
T d1flga_ 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF 202 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES
T ss_pred cccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEec
Confidence 643 11111 12233 35555532 134799999999999765544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.31 E-value=0.017 Score=48.26 Aligned_cols=108 Identities=18% Similarity=0.260 Sum_probs=68.9
Q ss_pred eEEEecC--C-E-EEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC-----CEEEEEECCC
Q 019103 109 GLLYAEN--D-T-LFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ-----KTGFIYDQNN 179 (346)
Q Consensus 109 GL~~~~d--~-~-LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~-----~~v~V~D~~t 179 (346)
|+..+|| | + +|++.| .|.++|+++|+..+-..-+...+.-.++++|++|+-+.+.+ ..++++|..+
T Consensus 3 ~~~~sPdi~G~~v~f~~~~-----dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~ 77 (281)
T d1k32a2 3 NLLLNPDIHGDRIIFVCCD-----DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN 77 (281)
T ss_dssp CCCEEEEEETTEEEEEETT-----EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT
T ss_pred CcccCCCCCCCEEEEEeCC-----cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC
Confidence 4556677 6 3 666654 69999999998765444444445545677888887666543 3599999988
Q ss_pred CcEEEEEecC---------CCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcE
Q 019103 180 LNKLEEFTHQ---------MKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKV 222 (346)
Q Consensus 180 l~~i~ti~~~---------~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kv 222 (346)
.+... +... .....+.++||+.|+.+.. ...+..+|.++.+.
T Consensus 78 g~~~~-lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (281)
T d1k32a2 78 GEIKR-ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF 134 (281)
T ss_dssp TEEEE-CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred CceEE-eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence 86643 2111 1233457889999887642 22466667655443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.30 E-value=0.011 Score=57.89 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCCCCeEEEEECCCCcEEEEeccC----------CCeeEEEEEEeCCEEEEEEeeCCEEEEEECCCCcEEE
Q 019103 115 NDTLFESTGLYGRSSVRRVALETGKVEAINQME----------GSYFGEGLTLLGEKLFQVTWLQKTGFIYDQNNLNKLE 184 (346)
Q Consensus 115 d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~----------~~~FgeGit~~g~~LY~ltw~~~~v~V~D~~tl~~i~ 184 (346)
||+||+++. .+.|..+|.+||+++=+.... ...-..|+++.++++|+.+. ++.++.+|++|++++-
T Consensus 77 ~g~vyv~t~---~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-~g~l~alda~tG~~~W 152 (573)
T d1kb0a2 77 DGIMYVSAS---WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-DGRLIALDAATGKEVW 152 (573)
T ss_dssp TTEEEEECG---GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-TSEEEEEETTTCCEEE
T ss_pred CCEEEEECC---CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-ccceeeecccccccee
Confidence 689999976 358999999999988665321 11224578888999999875 4789999999999998
Q ss_pred EEecC-CCce-eEEee----CCCEEEE-ECC-----CCeEEEEeCCCCcEEEEEEe
Q 019103 185 EFTHQ-MKDG-WGLAT----DGKVLFG-SDG-----SSMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 185 ti~~~-~peG-wGLt~----Dg~~Lyv-SdG-----s~~l~vIDp~T~kvi~~I~V 228 (346)
+.... .+.| +.++. -++.+|+ +.+ ...|+-+|++|++++=+..+
T Consensus 153 ~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 208 (573)
T d1kb0a2 153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (573)
T ss_dssp EEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred cccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence 77652 1222 22221 2556666 222 45799999999999877655
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.066 Score=43.26 Aligned_cols=167 Identities=13% Similarity=0.080 Sum_probs=106.9
Q ss_pred eEEEEEEe-cCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE
Q 019103 93 IQVVNEFP-HDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT 171 (346)
Q Consensus 93 ~~Vv~t~p-hd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~ 171 (346)
.+.+.++. |. .....|.+ |+.++.+++ .+..|.+||..++............. .... ......+.....+.
T Consensus 45 ~~~~~~l~~H~--~~V~~v~~--~~~~l~s~s--~D~~i~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 116 (293)
T d1p22a2 45 LECKRILTGHT--GSVLCLQY--DERVIITGS--SDSTVRVWDVNTGEMLNTLIHHCEAV-LHLR-FNNGMMVTCSKDRS 116 (293)
T ss_dssp CCEEEEECCCS--SCEEEEEC--CSSEEEEEE--TTSCEEEEESSSCCEEEEECCCCSCE-EEEE-CCTTEEEEEETTSC
T ss_pred CcEEEEEecCC--CCEeeeec--ccceeeccc--cccccccccccccccccccccccccc-cccc-ccccceeecccccc
Confidence 45566665 42 22345555 566677767 45699999999998877776544321 1122 22334555667788
Q ss_pred EEEEECCCCcEEEEEec--C-CCceeEEeeCCCEEEEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEE
Q 019103 172 GFIYDQNNLNKLEEFTH--Q-MKDGWGLATDGKVLFGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEV 248 (346)
Q Consensus 172 v~V~D~~tl~~i~ti~~--~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~L 248 (346)
+.++|..+......... . ...-..+.+....++...++..|.++|..+.+.+.++.-... ++ ..+.+.+..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~--~v---~~~~~~~~~l 191 (293)
T d1p22a2 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR--GI---ACLQYRDRLV 191 (293)
T ss_dssp EEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CE---EEEEEETTEE
T ss_pred eeEeeccccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEccccc--cc---ccccCCCCeE
Confidence 89999887765444332 1 122233455677777766788999999999999887765332 22 2344445555
Q ss_pred EEEecCCCeEEEEeCCCCeEEEEEE
Q 019103 249 WANVWQTDCIARISHEDGVVLGWVL 273 (346)
Q Consensus 249 yaNv~~sn~I~vID~~TG~Vv~~I~ 273 (346)
.+ ...++.|.+.|..+++.+....
T Consensus 192 ~~-~~~dg~i~i~d~~~~~~~~~~~ 215 (293)
T d1p22a2 192 VS-GSSDNTIRLWDIECGACLRVLE 215 (293)
T ss_dssp EE-EETTSCEEEEETTTCCEEEEEC
T ss_pred EE-ecCCCEEEEEecccceeeeeec
Confidence 44 4457889999999999888774
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.077 Score=44.83 Aligned_cols=198 Identities=13% Similarity=0.052 Sum_probs=116.7
Q ss_pred eeEEEEEEecCCCCcceeEEEecCCEEEEEcCCC-------CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEE
Q 019103 92 TIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLY-------GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQ 164 (346)
Q Consensus 92 t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGly-------g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ 164 (346)
+.+.+...|.. +.. ..++.. ++.||+-.|.. ..+.+.++|+.+.+-...-+++....+.+++..++++|+
T Consensus 30 ~W~~~~~~p~~-R~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~ 106 (288)
T d1zgka1 30 TWLRLADLQVP-RSG-LAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYA 106 (288)
T ss_dssp EEEECCCCSSC-CBS-CEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEE
T ss_pred eEEECCCCCCc-cce-eEEEEE-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccccceeeEE
Confidence 34444455653 332 244444 57899887742 135788999999987666566655556778888999998
Q ss_pred EE-----eeCCEEEEEECCCCcEEEEEecC-CCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcEEEEEEeccCC
Q 019103 165 VT-----WLQKTGFIYDQNNLNKLEEFTHQ-MKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKG 232 (346)
Q Consensus 165 lt-----w~~~~v~V~D~~tl~~i~ti~~~-~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kvi~~I~V~~~G 232 (346)
.- ...+...++|..+.+....-... ...+.+.......+|+--| .+.++.+|+.+.+.... ....
T Consensus 107 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~---~~~~ 183 (288)
T d1zgka1 107 VGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---TAMN 183 (288)
T ss_dssp ECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---CCCS
T ss_pred ecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEeeccccccccc---cccc
Confidence 63 23466788998887654433322 2355566666667776432 56789999988765421 1111
Q ss_pred eeeeeceeeEeeCCEEEEEe-----cCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEe
Q 019103 233 REVRNLNELEFIKGEVWANV-----WQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVT 307 (346)
Q Consensus 233 ~pv~~lNELE~~~G~LyaNv-----~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVT 307 (346)
.+.. -......+++||+-- ...+...+.|+.+.+-.. ++.. +....-.+++.. +++|||.
T Consensus 184 ~~~~-~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~---~~~~---------p~~r~~~~~~~~--~~~l~v~ 248 (288)
T d1zgka1 184 TIRS-GAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTF---VAPM---------KHRRSALGITVH--QGRIYVL 248 (288)
T ss_dssp SCCB-SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE---CCCC---------SSCCBSCEEEEE--TTEEEEE
T ss_pred cccc-cccccceeeeEEEecCccccccccceeeeeecceeeec---ccCc---------cCcccceEEEEE--CCEEEEE
Confidence 1111 112445678888652 234667788888876432 2111 111122355554 4688888
Q ss_pred cCC
Q 019103 308 GKL 310 (346)
Q Consensus 308 GK~ 310 (346)
|..
T Consensus 249 GG~ 251 (288)
T d1zgka1 249 GGY 251 (288)
T ss_dssp CCB
T ss_pred ecC
Confidence 754
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.79 E-value=0.03 Score=53.23 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=42.2
Q ss_pred CCEEEEEecCCCeEEEEeCCCCe---EEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCCCcEEE
Q 019103 245 KGEVWANVWQTDCIARISHEDGV---VLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLWPKLYE 316 (346)
Q Consensus 245 ~G~LyaNv~~sn~I~vID~~TG~---Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~Wp~l~e 316 (346)
+|.+++..|....|.+|..+... +...+.+.. ...-+-+|++.|||..|||+-..-+++|+
T Consensus 368 ~g~lfvg~l~~~~i~~v~~~~~~~~~~~~~~~~~~-----------~~~R~rdv~~gpDGs~lyv~~d~~G~i~r 431 (450)
T d1crua_ 368 ENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFK-----------SNNRYRDVIASPDGNVLYVLTDTAGNVQK 431 (450)
T ss_dssp TTEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESC-----------CSSCEEEEEECTTSSCEEEEECSSCCEEC
T ss_pred CCCEEEEECcCCEEEEEEEcCCCceeeEEEEeccC-----------CCCCceEEEECCCCCEEEEEECCCCCEec
Confidence 57899999998888777665432 223332211 11236789999999999998777777776
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.081 Score=44.68 Aligned_cols=148 Identities=9% Similarity=0.061 Sum_probs=89.8
Q ss_pred EEEEEcCCC--CCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEE---------eeCCEEEEEECCCCcEE--
Q 019103 117 TLFESTGLY--GRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVT---------WLQKTGFIYDQNNLNKL-- 183 (346)
Q Consensus 117 ~LyeStGly--g~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~lt---------w~~~~v~V~D~~tl~~i-- 183 (346)
.||+-.|.. .-+.+.+||++|++-...-+++....+..++..+++||+.- ...+.+++||+.+.+..
T Consensus 6 ~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~ 85 (288)
T d1zgka1 6 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC 85 (288)
T ss_dssp CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEEC
T ss_pred EEEEECCcCCCCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccccccc
Confidence 466665532 23578899999998666556665555677888899999862 23578999998765443
Q ss_pred EEEecCCCceeEEeeCCCEEEEECC------CCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEeeCCEEEEE-----e
Q 019103 184 EEFTHQMKDGWGLATDGKVLFGSDG------SSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFIKGEVWAN-----V 252 (346)
Q Consensus 184 ~ti~~~~peGwGLt~Dg~~LyvSdG------s~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaN-----v 252 (346)
...+.+ ..+.+.+.-++++|+..| .+.....|+.+.+... ......+.... .+-..++.+|+. .
T Consensus 86 ~~~p~~-r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~r~~~-~~~~~~~~~~~~GG~~~~ 160 (288)
T d1zgka1 86 APMSVP-RNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLTRRIGV-GVAVLNRLLYAVGGFDGT 160 (288)
T ss_dssp CCCSSC-CBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSSCCBSC-EEEEETTEEEEECCBCSS
T ss_pred ccccce-ecceeccccceeeEEecceecccccceeeeeccccCcccc---ccccccccccc-eeeeeeecceEecCcccc
Confidence 333333 345555555667777543 5567888988876432 21111111111 122345666642 2
Q ss_pred cCCCeEEEEeCCCCeEE
Q 019103 253 WQTDCIARISHEDGVVL 269 (346)
Q Consensus 253 ~~sn~I~vID~~TG~Vv 269 (346)
...+.+.+.|+.+++..
T Consensus 161 ~~~~~~~~~d~~~~~~~ 177 (288)
T d1zgka1 161 NRLNSAECYYPERNEWR 177 (288)
T ss_dssp CBCCCEEEEETTTTEEE
T ss_pred cccceEEEeeccccccc
Confidence 23467889999998754
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.18 Score=41.78 Aligned_cols=190 Identities=14% Similarity=0.042 Sum_probs=106.2
Q ss_pred eEEEecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeCCE--EEEEECCCCcEEEE
Q 019103 109 GLLYAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQKT--GFIYDQNNLNKLEE 185 (346)
Q Consensus 109 GL~~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~~~--v~V~D~~tl~~i~t 185 (346)
-..++||| +|.......+...+..++..+++...........+....+++++.++......+. +..+..........
T Consensus 43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (269)
T d2hqsa1 43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV 122 (269)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC
T ss_pred eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccccccceee
Confidence 45799999 4533334457778999999999987777777777676677778877766544433 33444444433333
Q ss_pred EecC-CCceeEEeeCCCEEEE-EC--CCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-E-EEEEe-cCCCe
Q 019103 186 FTHQ-MKDGWGLATDGKVLFG-SD--GSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-E-VWANV-WQTDC 257 (346)
Q Consensus 186 i~~~-~peGwGLt~Dg~~Lyv-Sd--Gs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~-LyaNv-~~sn~ 257 (346)
.... ....-..+++++.++. +. |...|+..|.++....... . ..+.... ..+. +| . +|+.. -....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~-~~~~~~~----~~~spdg~~~~~~~~~~~~~~ 196 (269)
T d2hqsa1 123 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-W-EGSQNQD----ADVSSDGKFMVMVSSNGGQQH 196 (269)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-C-SSSEEEE----EEECTTSSEEEEEEECSSCEE
T ss_pred eeccccccccccccccccceecccccCCceEeeeecccccceeee-c-ccccccc----cccccccceeEEEeecCCcee
Confidence 3322 1122235567776544 54 5668999998886543221 1 1111110 1122 44 3 34433 22446
Q ss_pred EEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEE-EEecCC-CCcEEEEEE
Q 019103 258 IARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRI-FVTGKL-WPKLYEINL 319 (346)
Q Consensus 258 I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~L-fVTGK~-Wp~l~ev~l 319 (346)
|.+.|.+++...-+... . .-...+|+|||+.| |++... ...||.+.+
T Consensus 197 i~~~~~~~~~~~~~~~~--------------~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~ 245 (269)
T d2hqsa1 197 IAKQDLATGGVQVLSST--------------F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST 245 (269)
T ss_dssp EEEEETTTCCEEECCCS--------------S-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred eeEeecccccceEeecC--------------c-cccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 88889888875322110 0 11346799999988 555433 233444443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.41 E-value=0.13 Score=45.30 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=77.2
Q ss_pred CCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEe-CCEEEEEEee------CCEEEEEE
Q 019103 104 RAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLL-GEKLFQVTWL------QKTGFIYD 176 (346)
Q Consensus 104 ~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~-g~~LY~ltw~------~~~v~V~D 176 (346)
..|..|.++.+||++|+..|. +.+.+.+||+++++-...-.++....+.+.+.. ++++|+.--. .+.+.+||
T Consensus 75 ~~~~~~~~~~~~g~i~v~Gg~-~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd 153 (387)
T d1k3ia3 75 DMFCPGISMDGNGQIVVTGGN-DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 153 (387)
T ss_dssp CCSSCEEEECTTSCEEEECSS-STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred ccceeEEEEecCCcEEEeecC-CCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeec
Confidence 445578889899999998663 667999999999987665566544445556654 5678877322 35799999
Q ss_pred CCCCcEEE--EEecC---C----------CceeEEeeCCCEEEEECC-CCeEEEEeCCCCcEEEE
Q 019103 177 QNNLNKLE--EFTHQ---M----------KDGWGLATDGKVLFGSDG-SSMLYQIDPQTLKVIRK 225 (346)
Q Consensus 177 ~~tl~~i~--ti~~~---~----------peGwGLt~Dg~~LyvSdG-s~~l~vIDp~T~kvi~~ 225 (346)
+.+.+-.. ..... . ...+.+.-.+..+|+..+ ++.++..|+.+......
T Consensus 154 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~ 218 (387)
T d1k3ia3 154 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA 218 (387)
T ss_dssp TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEE
T ss_pred CCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeec
Confidence 98875432 11100 0 011222222344555554 67888999998876543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.17 E-value=0.053 Score=51.40 Aligned_cols=69 Identities=16% Similarity=0.307 Sum_probs=45.4
Q ss_pred eeeEEEEEEecCCCCcceeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCe---eE----EEEEEe-----
Q 019103 91 YTIQVVNEFPHDPRAFTQGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAINQMEGSY---FG----EGLTLL----- 158 (346)
Q Consensus 91 ~t~~Vv~t~phd~~~FTqGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~---Fg----eGit~~----- 158 (346)
++++++.+= . ..| .+|+|.|||+||++.- +..+|.+++.++++......++... -| -||+++
T Consensus 17 f~~~~ia~~-L-~~P--~~la~~pdg~llVter--~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~ 90 (450)
T d1crua_ 17 FDKKVILSN-L-NKP--HALLWGPDNQIWLTER--ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKN 90 (450)
T ss_dssp SCEEEEECC-C-SSE--EEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTT
T ss_pred cEEEEEECC-C-CCc--eEEEEeCCCeEEEEEe--cCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCcc
Confidence 456666541 2 356 4999999999999853 2349999999999876655543211 01 246665
Q ss_pred CCEEEEE
Q 019103 159 GEKLFQV 165 (346)
Q Consensus 159 g~~LY~l 165 (346)
++.+|+.
T Consensus 91 n~~iYvs 97 (450)
T d1crua_ 91 NPYIYIS 97 (450)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 3678876
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.47 Score=44.41 Aligned_cols=202 Identities=10% Similarity=0.034 Sum_probs=102.5
Q ss_pred eEEEecCCE-EEEEcC-C-----CCCCeEEEEECCCCcEEEEeccC--CCee-EEEEEEeCCEEEEEEeeCCEEEEEECC
Q 019103 109 GLLYAENDT-LFESTG-L-----YGRSSVRRVALETGKVEAINQME--GSYF-GEGLTLLGEKLFQVTWLQKTGFIYDQN 178 (346)
Q Consensus 109 GL~~~~d~~-LyeStG-l-----yg~s~V~~iDl~Tgkv~~~~~l~--~~~F-geGit~~g~~LY~ltw~~~~v~V~D~~ 178 (346)
...++||++ ++.++. . ...+.+.++|+.+|+.....+.. .... -...+++|+.|.-+ .++.+++++..
T Consensus 65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv--~~~nl~~~~~~ 142 (465)
T d1xfda1 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI--FENNIYYCAHV 142 (465)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE--ETTEEEEESSS
T ss_pred eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE--ecceEEEEecC
Confidence 557888884 444322 1 12357889999999865443322 1110 02245677665332 47889999887
Q ss_pred CCcEEEEEecCC--------------------CceeEEeeCCCEEEEE--CCCC--------------------------
Q 019103 179 NLNKLEEFTHQM--------------------KDGWGLATDGKVLFGS--DGSS-------------------------- 210 (346)
Q Consensus 179 tl~~i~ti~~~~--------------------peGwGLt~Dg~~LyvS--dGs~-------------------------- 210 (346)
+.+.+.-...+. ..|.-.+|||++|... |.+.
T Consensus 143 ~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G 222 (465)
T d1xfda1 143 GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG 222 (465)
T ss_dssp SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred CCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccC
Confidence 665544322110 1233358999987552 3221
Q ss_pred ------eEEEEeCCCCcEEEEEEeccCCe-eeeeceeeEee-CCEEEEEecCC----CeEEEEeCCCCeEEEEEECCchh
Q 019103 211 ------MLYQIDPQTLKVIRKDIVRYKGR-EVRNLNELEFI-KGEVWANVWQT----DCIARISHEDGVVLGWVLLPNLR 278 (346)
Q Consensus 211 ------~l~vIDp~T~kvi~~I~V~~~G~-pv~~lNELE~~-~G~LyaNv~~s----n~I~vID~~TG~Vv~~I~l~~l~ 278 (346)
+|+++|.++.+............ .-..+..+.+. ++++++..... ..|.++|+++|++...+.-. .
T Consensus 223 ~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~--~ 300 (465)
T d1xfda1 223 SENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE--S 300 (465)
T ss_dssp SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE--C
T ss_pred CCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc--C
Confidence 23333333322211100000000 00122334443 56766543222 26999999999987655210 0
Q ss_pred hhhhhccCCCCceeeEEEEeCCCCEE-EE---ecCCCCcEEEEEEe
Q 019103 279 ERLVAAGYNGIDVLNGIAWDSNRNRI-FV---TGKLWPKLYEINLR 320 (346)
Q Consensus 279 ~~~~~~~~~~~~vlNGIA~d~~~~~L-fV---TGK~Wp~l~ev~l~ 320 (346)
.+.- +-......|.++++.+ |+ .--.|+.+|.+.+.
T Consensus 301 -----~~wv-~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~ 340 (465)
T d1xfda1 301 -----EAWL-HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS 340 (465)
T ss_dssp -----SSCC-CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred -----CceE-eccCCceeEccCCCeeEEEEeeeecccCceEEEEec
Confidence 0000 0011235688999855 33 23469999999875
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.13 Score=42.67 Aligned_cols=111 Identities=14% Similarity=0.089 Sum_probs=67.0
Q ss_pred EecCC-EEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC--CEEEEEECCCCcEEEEEec
Q 019103 112 YAEND-TLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ--KTGFIYDQNNLNKLEEFTH 188 (346)
Q Consensus 112 ~~~d~-~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~--~~v~V~D~~tl~~i~ti~~ 188 (346)
.+.++ .++......|...|..++++++...............-+..+++.++...... ..++++|.++....-+...
T Consensus 134 ~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 213 (269)
T d2hqsa1 134 WFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST 213 (269)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS
T ss_pred cccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecC
Confidence 33333 44444445577889999999987654444433333333444666666554443 4577788777655333222
Q ss_pred CCCceeEEeeCCCEE-EEEC--CCCeEEEEeCCCCcE
Q 019103 189 QMKDGWGLATDGKVL-FGSD--GSSMLYQIDPQTLKV 222 (346)
Q Consensus 189 ~~peGwGLt~Dg~~L-yvSd--Gs~~l~vIDp~T~kv 222 (346)
+.-..-.++|||++| |+++ +...|+++|..+.+.
T Consensus 214 ~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 214 FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 211223589999987 6665 466899999877654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.53 E-value=0.29 Score=42.84 Aligned_cols=197 Identities=13% Similarity=0.050 Sum_probs=108.7
Q ss_pred eEEEe-cCCEEEEEcCCC---------CCCeEEEEECCCCcEEEEe--ccCCCeeEEEEEEe-CCEEEEEE-eeCCEEEE
Q 019103 109 GLLYA-ENDTLFESTGLY---------GRSSVRRVALETGKVEAIN--QMEGSYFGEGLTLL-GEKLFQVT-WLQKTGFI 174 (346)
Q Consensus 109 GL~~~-~d~~LyeStGly---------g~s~V~~iDl~Tgkv~~~~--~l~~~~FgeGit~~-g~~LY~lt-w~~~~v~V 174 (346)
+.++. .||++|+-.|.. ....+.+||+.+++-.... ..+...|..|.+.. ++++|+.- ...+.+.+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence 33433 578888754421 1124778999999865433 34555676676664 46777764 44578999
Q ss_pred EECCCCcEEEEEe--cC-CCceeEEeeCCCEEEEEC----C--CCeEEEEeCCCCcEEEEEEecc------CCeeeeece
Q 019103 175 YDQNNLNKLEEFT--HQ-MKDGWGLATDGKVLFGSD----G--SSMLYQIDPQTLKVIRKDIVRY------KGREVRNLN 239 (346)
Q Consensus 175 ~D~~tl~~i~ti~--~~-~peGwGLt~Dg~~LyvSd----G--s~~l~vIDp~T~kvi~~I~V~~------~G~pv~~lN 239 (346)
||+.+.+-...-+ .+ ...+..+..||+.+++.- + .+.+.++|+.+.+-..--.... .+..+...+
T Consensus 103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 182 (387)
T d1k3ia3 103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 182 (387)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecc
Confidence 9998876543222 22 112334556777666631 1 4679999999987532111100 000000000
Q ss_pred ----eeEeeCCEEEEEecCCCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 240 ----ELEFIKGEVWANVWQTDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 240 ----ELE~~~G~LyaNv~~sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
.+...+|++|+.--.++.+...|+.+......-....-+.. .+....-..+.+....+++||.|..
T Consensus 183 ~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~v~v~GG~ 252 (387)
T d1k3ia3 183 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV-----APDAMCGNAVMYDAVKGKILTFGGS 252 (387)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEE-----CCCCBTCEEEEEETTTTEEEEECCB
T ss_pred ceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCccc-----CcccccccEEEeeccCCceEEEEec
Confidence 01122677787666677888899999987655433111110 1111122345566666778887753
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.48 E-value=0.51 Score=43.57 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=75.1
Q ss_pred CCEEE-EEEeeCCEEEEEEC---CC----CcEEEEEecC-CCceeEEeeCCCEEEEECCCCeEEEEeC--CCCcEEEEEE
Q 019103 159 GEKLF-QVTWLQKTGFIYDQ---NN----LNKLEEFTHQ-MKDGWGLATDGKVLFGSDGSSMLYQIDP--QTLKVIRKDI 227 (346)
Q Consensus 159 g~~LY-~ltw~~~~v~V~D~---~t----l~~i~ti~~~-~peGwGLt~Dg~~LyvSdGs~~l~vIDp--~T~kvi~~I~ 227 (346)
++.+| .++++++.+..|.. .. .+.+.+|+.+ ..||..+..+.++||+++...-|+.++. .+......|.
T Consensus 141 ~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~ 220 (353)
T d1h6la_ 141 TGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVID 220 (353)
T ss_dssp TCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEE
T ss_pred CCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeee
Confidence 35565 55888898765532 33 3566778775 4699999999999999998788888864 3333322222
Q ss_pred eccCCeeee-eceeeE-ee----CCEEEEEecCCCeEEEEeCCC-CeEEEEEEC
Q 019103 228 VRYKGREVR-NLNELE-FI----KGEVWANVWQTDCIARISHED-GVVLGWVLL 274 (346)
Q Consensus 228 V~~~G~pv~-~lNELE-~~----~G~LyaNv~~sn~I~vID~~T-G~Vv~~I~l 274 (346)
.. .|..+. -+.-|. |. +|+|.|+....|+..+.|-++ .+-++...+
T Consensus 221 ~~-~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i 273 (353)
T d1h6la_ 221 RA-DGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI 273 (353)
T ss_dssp EC-SSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred cc-cCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence 21 111111 011122 21 468999999999999999988 588877754
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.96 E-value=0.17 Score=46.85 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=77.8
Q ss_pred eeEEE--ec-CCEEE-EEcCCCCCCeEEEEEC---CCCc----EEEEeccCCCeeEEEEEEeC--CEEEEEEeeCCEEEE
Q 019103 108 QGLLY--AE-NDTLF-ESTGLYGRSSVRRVAL---ETGK----VEAINQMEGSYFGEGLTLLG--EKLFQVTWLQKTGFI 174 (346)
Q Consensus 108 qGL~~--~~-d~~Ly-eStGlyg~s~V~~iDl---~Tgk----v~~~~~l~~~~FgeGit~~g--~~LY~ltw~~~~v~V 174 (346)
.|+.+ ++ +|.+| ..++. ...+..|.+ ..++ .++...++.. .|||..+. ++||++-. +.-++.
T Consensus 131 YGlc~y~~~~~g~~~afv~~k--~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q--~EGCVvDde~~~LyisEE-~~Giw~ 205 (353)
T d1h6la_ 131 YGFSLYHSQKTGKYYAMVTGK--EGEFEQYELNADKNGYISGKKVRAFKMNSQ--TEGMAADDEYGSLYIAEE-DEAIWK 205 (353)
T ss_dssp CCEEEEECTTTCCEEEEEECS--SSEEEEEEEEECTTSSEEEEEEEEEECSSC--EEEEEEETTTTEEEEEET-TTEEEE
T ss_pred eEEEEEecCCCCeEEEEEEcC--CceEEEEEEEcCCCCceeeEeeeccCCCCc--cceEEEeCCCCcEEEecC-ccceEE
Confidence 38777 33 35444 33443 346666644 4443 4556677766 59999986 69999966 456788
Q ss_pred EECC-----CCcEEEEEec----CCCceeEEe--eCCC-EEEEEC-CCCeEEEEeCCC-CcEEEEEEecc
Q 019103 175 YDQN-----NLNKLEEFTH----QMKDGWGLA--TDGK-VLFGSD-GSSMLYQIDPQT-LKVIRKDIVRY 230 (346)
Q Consensus 175 ~D~~-----tl~~i~ti~~----~~peGwGLt--~Dg~-~LyvSd-Gs~~l~vIDp~T-~kvi~~I~V~~ 230 (346)
|+++ ....+....- +-+||.+|= .|++ +|++|+ |+++..++|-++ ++-+.+..+..
T Consensus 206 ~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i~~ 275 (353)
T d1h6la_ 206 FSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQITD 275 (353)
T ss_dssp EESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECC
T ss_pred EEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEEec
Confidence 8864 2333333321 247888874 3554 888887 799999999877 68888888754
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.66 E-value=0.13 Score=46.92 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=69.4
Q ss_pred eeEEEecCCEEEEEcCCCCCCeEEEEECCCCcEEEEe---ccC---CCeeEEEEEEeCCEEEEE-Eee-------CCEEE
Q 019103 108 QGLLYAENDTLFESTGLYGRSSVRRVALETGKVEAIN---QME---GSYFGEGLTLLGEKLFQV-TWL-------QKTGF 173 (346)
Q Consensus 108 qGL~~~~d~~LyeStGlyg~s~V~~iDl~Tgkv~~~~---~l~---~~~FgeGit~~g~~LY~l-tw~-------~~~v~ 173 (346)
..+...+|+.++...+ +.+.++|+.||+....+ .+. ......-++++++.|... +-. .+.++
T Consensus 20 ~~~~W~~d~~~~~~~~----~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 20 YSLRWISDHEYLYKQE----NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCEECSSSEEEEESS----SCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cCCEeCCCCEEEEEcC----CcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEE
Confidence 3566777776444432 47999999999875543 222 223344456678775544 211 35789
Q ss_pred EEECCCCcEEEEEec-C-CCceeEEeeCCCEE-EEECCCCeEEEEeCCCCcEEE
Q 019103 174 IYDQNNLNKLEEFTH-Q-MKDGWGLATDGKVL-FGSDGSSMLYQIDPQTLKVIR 224 (346)
Q Consensus 174 V~D~~tl~~i~ti~~-~-~peGwGLt~Dg~~L-yvSdGs~~l~vIDp~T~kvi~ 224 (346)
++|.++.+.. ++.. + .-.-..++|||+++ |++| +.+++.|..+++.++
T Consensus 96 l~d~~~~~~~-~l~~~~~~~~~~~~SPDG~~ia~~~~--~~l~~~~~~~g~~~~ 146 (470)
T d2bgra1 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVWN--NDIYVKIEPNLPSYR 146 (470)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEET--TEEEEESSTTSCCEE
T ss_pred EEECCCCccc-ccccCCccccccccccCcceeeEeec--ccceEEECCCCceee
Confidence 9999988753 3432 2 11233479999865 5555 579999988887653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.31 E-value=0.14 Score=42.21 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=61.8
Q ss_pred eeEEeeC--CCEE-EEECCCCeEEEEeCCCCcEEEEEEeccCCeeeeeceeeEee-CC-EE-EEEecCC----CeEEEEe
Q 019103 193 GWGLATD--GKVL-FGSDGSSMLYQIDPQTLKVIRKDIVRYKGREVRNLNELEFI-KG-EV-WANVWQT----DCIARIS 262 (346)
Q Consensus 193 GwGLt~D--g~~L-yvSdGs~~l~vIDp~T~kvi~~I~V~~~G~pv~~lNELE~~-~G-~L-yaNv~~s----n~I~vID 262 (346)
++-++|| |+++ |+++| .|+++|.++.+.. ++.-+. +.... ..+- || +| |+..... ..|.++|
T Consensus 3 ~~~~sPdi~G~~v~f~~~~--dl~~~d~~~g~~~-~Lt~~~-~~~~~----p~~SPDG~~iaf~~~~~~~~~~~~i~~~~ 74 (281)
T d1k32a2 3 NLLLNPDIHGDRIIFVCCD--DLWEHDLKSGSTR-KIVSNL-GVINN----ARFFPDGRKIAIRVMRGSSLNTADLYFYN 74 (281)
T ss_dssp CCCEEEEEETTEEEEEETT--EEEEEETTTCCEE-EEECSS-SEEEE----EEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred CcccCCCCCCCEEEEEeCC--cEEEEECCCCCEE-EEecCC-CcccC----EEECCCCCEEEEEEeeCCCCCceEEEEEE
Confidence 4678999 9875 66765 6999999988764 443322 22211 2222 45 54 4433222 2599999
Q ss_pred CCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCCC
Q 019103 263 HEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKLW 311 (346)
Q Consensus 263 ~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~W 311 (346)
..+|+....... .... .........++|+|+++.++.+-...
T Consensus 75 ~~~g~~~~lt~~---~~~~----~~~~~~~~~~~~spdg~~l~~~~~~~ 116 (281)
T d1k32a2 75 GENGEIKRITYF---SGKS----TGRRMFTDVAGFDPDGNLIISTDAMQ 116 (281)
T ss_dssp TTTTEEEECCCC---CEEE----ETTEECSEEEEECTTCCEEEEECTTS
T ss_pred ecCCceEEeeec---CCCc----cCccccccccccCCCCCEEEEEEccC
Confidence 999987543211 1000 01122446789999999999875544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.53 Score=44.04 Aligned_cols=168 Identities=8% Similarity=0.040 Sum_probs=86.7
Q ss_pred eEEEEECCCCcEEEEec-cC-----CCeeEEEEEE-eCCEEEEEEee-C---CEEEEEECCCCcEEEEEecCCCcee---
Q 019103 129 SVRRVALETGKVEAINQ-ME-----GSYFGEGLTL-LGEKLFQVTWL-Q---KTGFIYDQNNLNKLEEFTHQMKDGW--- 194 (346)
Q Consensus 129 ~V~~iDl~Tgkv~~~~~-l~-----~~~FgeGit~-~g~~LY~ltw~-~---~~v~V~D~~tl~~i~ti~~~~peGw--- 194 (346)
++.++|++++++..... .. ..++.. +.. .++++++.... . ..+.++|+++++....+.-. .+||
T Consensus 229 ~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~-~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~-~~~wv~~ 306 (465)
T d1xfda1 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITM-VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHR 306 (465)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEE-EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCC
T ss_pred eEEEEecCCCcEEEEEeccCcCccccceeee-eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc-CCceEec
Confidence 57788888776533321 11 112222 333 34565554322 2 25888999999876655432 3444
Q ss_pred -----EEeeCCCE---EEEEC--CCCeEEEEeCC------CCcEEEEEEeccCCeeeeeceeeEeeCCEEEEEecC----
Q 019103 195 -----GLATDGKV---LFGSD--GSSMLYQIDPQ------TLKVIRKDIVRYKGREVRNLNELEFIKGEVWANVWQ---- 254 (346)
Q Consensus 195 -----GLt~Dg~~---LyvSd--Gs~~l~vIDp~------T~kvi~~I~V~~~G~pv~~lNELE~~~G~LyaNv~~---- 254 (346)
.+++||+. ++.++ |-+.++.++.. +.+.++.++-|. -.|..+..+.-.++.||..-..
T Consensus 307 ~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~--w~V~~i~~~d~~~~~vyF~a~~~~p~ 384 (465)
T d1xfda1 307 QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD--WDVTKILAYDEKGNKIYFLSTEDLPR 384 (465)
T ss_dssp CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--SCEEEEEEEETTTTEEEEEESSSCTT
T ss_pred cCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCC--ceEEEEEEEcCCCCEEEEEEeCCCCC
Confidence 47889884 34454 56677777532 222222333222 2332211122225678743322
Q ss_pred CCeEEEEeCCCCeEEEEEECCchhhhhhhccCCCCceeeEEEEeCCCCEEEEecCC
Q 019103 255 TDCIARISHEDGVVLGWVLLPNLRERLVAAGYNGIDVLNGIAWDSNRNRIFVTGKL 310 (346)
Q Consensus 255 sn~I~vID~~TG~Vv~~I~l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~LfVTGK~ 310 (346)
...+.+|+...+.....+.. .+. ...--+-+.++|+++.+..+...
T Consensus 385 ~~hly~v~l~g~~~~~~lt~-~~~---------~~~~~~~~~~S~~~~y~v~~~s~ 430 (465)
T d1xfda1 385 RRQLYSANTVGNFNRQCLSC-DLV---------ENCTYFSASFSHSMDFFLLKCEG 430 (465)
T ss_dssp CCEEEEECSSTTCCCBCSST-TSS---------SSCCCCEEEECTTSSEEEEECCS
T ss_pred ceEEEEEECCCCCcceeecc-ccC---------CCCCEEEEEECCCCCEEEEEeec
Confidence 23588887766543222211 111 12234678999999988877554
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.86 E-value=1.5 Score=40.01 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=66.1
Q ss_pred cceeEEEecCCE-E-E-EEcCCCCCCeEEEEECCCCcEEEEeccCCCee-EEEEEEeCCEEEEEE---------------
Q 019103 106 FTQGLLYAENDT-L-F-ESTGLYGRSSVRRVALETGKVEAINQMEGSYF-GEGLTLLGEKLFQVT--------------- 166 (346)
Q Consensus 106 FTqGL~~~~d~~-L-y-eStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~F-geGit~~g~~LY~lt--------------- 166 (346)
+..|+.++||++ + | ++.|..+...|+++|++||+.+... ++..-| +.+.+.+++.+|-..
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-cccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 346778888884 2 2 5566556789999999999977643 222111 122333456665443
Q ss_pred eeCCEEEEEECCCCcEEEEEecC--C-C---ceeEEeeCCCEEEE--ECC---CCeEEEEeCCC
Q 019103 167 WLQKTGFIYDQNNLNKLEEFTHQ--M-K---DGWGLATDGKVLFG--SDG---SSMLYQIDPQT 219 (346)
Q Consensus 167 w~~~~v~V~D~~tl~~i~ti~~~--~-p---eGwGLt~Dg~~Lyv--SdG---s~~l~vIDp~T 219 (346)
+..++++.-...+-..-...-++ . + -+..++.|++++++ +.+ .+.++.+|..+
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~ 268 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCC
Confidence 44567887766654332222221 1 1 23447889999876 333 45788898543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.45 E-value=0.85 Score=41.10 Aligned_cols=112 Identities=7% Similarity=-0.047 Sum_probs=70.1
Q ss_pred CEEEEEcCCCCCCeEEEEECCCCcEEEEeccCCCeeEEEEEEeCCEEEEEEeeC------CEEEEEECCCCcEEEEEecC
Q 019103 116 DTLFESTGLYGRSSVRRVALETGKVEAINQMEGSYFGEGLTLLGEKLFQVTWLQ------KTGFIYDQNNLNKLEEFTHQ 189 (346)
Q Consensus 116 ~~LyeStGlyg~s~V~~iDl~Tgkv~~~~~l~~~~FgeGit~~g~~LY~ltw~~------~~v~V~D~~tl~~i~ti~~~ 189 (346)
+.++..+...|...|..++.+.++. ..+.-+......-+..+++.+|.+...+ ..++.++.........+..+
T Consensus 332 ~~~~~~s~~dg~~~ly~~~~~g~~~-~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~ 410 (470)
T d2bgra1 332 SFYKIISNEEGYRHICYFQIDKKDC-TFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCE 410 (470)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSCC-EESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTT
T ss_pred CcEEEEeccCcCceeEEEeccCCce-eeeccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEeccc
Confidence 3444444445777888899876654 3333333222223566788888765432 24899998876665555321
Q ss_pred ---CCce---eEEeeCCCEEEE-ECCC--CeEEEEeCCCCcEEEEEEe
Q 019103 190 ---MKDG---WGLATDGKVLFG-SDGS--SMLYQIDPQTLKVIRKDIV 228 (346)
Q Consensus 190 ---~peG---wGLt~Dg~~Lyv-SdGs--~~l~vIDp~T~kvi~~I~V 228 (346)
...| ..++|||+++.. ..|. -.+.+++..+++.++.++-
T Consensus 411 ~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 411 LNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp TSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred ccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence 1233 358999998665 3453 3688999999998887753
|