Citrus Sinensis ID: 019150

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
Protein Sequence
MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPPAPSQAPLASSPPMKAPTHRASPSLPSSTSNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETAKPRLLLLLFVLSTVSIGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISHK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHcccccEEEEEccEEEccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHEEEEccccccccccccccccccEEEEEEEEcEEEEEccccccccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEcccEEEEcccccccccEEEEEEEccccEEEEccccccccccccccccccEEEEEEEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEcHHHHHHHHHHHHccEEEEcccEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEccccccccccccccccEEcccccEEEEEEEEcccEEEEccccccHHccccccccccccccccccccccccEEEEEEEEcccEEEEEEEEcccEEEEccccccccEEEEEEEcccccEEEccccccccccccccccccccEEEEEEEEEcccccccEcccccccccccccccccccccEEEccccccccccccccccccccccHHEEccc
Coil and Loop (DISEMBL)
mditphtgisfsasdAAAINFSLtthkvhfdstlvgdykllnftwfeppapsqaplassppmkapthraspslpsstsnkgkhsNLILLFGIGTGLLITAIISVLIICSCafrrrnskaspketakPRLLLLLFVLSTVSigwvnsheesgkwscesdSEIRVLAEfkpglitldghaddwedidgsefsllpaldphaeheykggkmnvkalhdghDVYFLLQVdgeyvyskgentrcpsIALMFQIgedatyhnmggckegigsctsktckghevdimhfsigsaipgrlyggnpvdnsegnggdrfgHLVDVYawtphcryldgmgpsgiklnhfrsfishk
Flexible Loop (DISEMBL)
mditphtgisfsasDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPPAPSQAPLASSPPMKAPTHRASPSLPSSTSNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFrrrnskaspketakprlLLLLFVLSTVSIGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISHK
Low Complexity Region (SEG)
MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEppapsqaplassppMKAPTHRASPSLPSSTSNKGKHSNlillfgigtgllitaiiSVLIICSCAFRRRNSKASPKETAKPRlllllFVLSTVSIGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISHK
Disordered region (IsUnstruct)
*************SDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFE*************************************NLILLFGIGTGLLITAIISVLIICSCAFRR************PRLLLLLFVLSTVSIGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVD****NGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSF****
Disordered Region (DISOPRED)
*DITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPPAPS***********************************LLFGIGTGLLITAIISVLIICSC*********************LLFVLSTVSIGWVNSH************EIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHF*SFI***
Disordered Region (DISEMBL)
MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPPAP*****************************GKHSNLILLFGIGTGLLITAIISVLIICSCAFRRR********TAKPRLLLLLFVLSTVSIGWVN************DSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISHK
Disordered Region (DISPRO)
MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPPAPSQAP***************************HSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETAKPRLLLLLFVLSTVSIGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISH*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEPPAPSQAPLASSPPMKAPTHRASPSLPSSTSNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETAKPRLLLLLFVLSTVSIGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSGIKLNHFRSFISHK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
224128266	362	predicted protein [Populus trichocarpa]	0.556	0.530	0.786	1e-90
297817576	361	hypothetical protein ARALYDRAFT_907811 [	0.571	0.545	0.747	2e-90
255548411	364	conserved hypothetical protein [Ricinus	0.556	0.527	0.786	3e-90
15228739	361	heme binding protein [Arabidopsis thalia	0.571	0.545	0.752	3e-90
359487547	362	PREDICTED: uncharacterized protein LOC10	0.582	0.555	0.736	2e-89
356499833	397	PREDICTED: uncharacterized protein LOC10	0.547	0.476	0.793	5e-89
147819855	362	hypothetical protein VITISV_023420 [Viti	0.582	0.555	0.731	6e-89
356534742	365	PREDICTED: uncharacterized protein LOC10	0.547	0.517	0.777	8e-86
449436413	375	PREDICTED: uncharacterized protein LOC10	0.542	0.498	0.777	3e-85
357442211	365	hypothetical protein MTR_1g086810 [Medic	0.547	0.517	0.767	4e-85

>gi|224128266|ref|XP_002320284.1| predicted protein [Populus trichocarpa] gi|222861057|gb|EEE98599.1| predicted protein [Populus trichocarpa]

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 172/192 (89%)

Query: 141 IGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAE 200
           IGWVNSH+ESG+WSCESD EIR+ AEFKPG ITLDGHADDW+DIDG + SLLPALDP  +
Sbjct: 17  IGWVNSHQESGEWSCESDEEIRIEAEFKPGFITLDGHADDWKDIDGLDSSLLPALDPDDD 76

Query: 201 HEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGC 260
            +Y GGKM VKALHDG+D++FLLQVDG Y Y+KG+N +CPS+ALMF IG++ATYHNMGGC
Sbjct: 77  KKYTGGKMTVKALHDGNDMFFLLQVDGNYAYTKGDNKKCPSVALMFPIGDEATYHNMGGC 136

Query: 261 KEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTP 320
           KEG G+C  KTCKGHEVDIMHFSIG+AIPGRLYGGNP+DN EGNGGDRFGHLVD+Y+W P
Sbjct: 137 KEGTGTCNRKTCKGHEVDIMHFSIGNAIPGRLYGGNPLDNGEGNGGDRFGHLVDLYSWNP 196

Query: 321 HCRYLDGMGPSG 332
           HCRYLDG GPSG
Sbjct: 197 HCRYLDGTGPSG 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817576|ref|XP_002876671.1| hypothetical protein ARALYDRAFT_907811 [Arabidopsis lyrata subsp. lyrata] gi|297322509|gb|EFH52930.1| hypothetical protein ARALYDRAFT_907811 [Arabidopsis lyrata subsp. lyrata]

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 151/202 (74%), Positives = 174/202 (86%), Gaps = 5/202 (2%)

Query: 131 LLLFVLSTVSIGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFS 190
           LL+F   TV      SH+ESG+WSCESDSEI+++A+F+PG+ITLDGH DDW+DIDGSEF 
Sbjct: 10  LLIFTAETVV-----SHQESGEWSCESDSEIQIIADFRPGIITLDGHNDDWKDIDGSEFP 64

Query: 191 LLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGE 250
           L PALDP A+HEY  GKM VKALHDG D+YF+L++DG Y Y KGEN +CPS+ALMFQIG+
Sbjct: 65  LRPALDPDADHEYDAGKMTVKALHDGRDIYFMLEIDGNYAYDKGENNKCPSVALMFQIGD 124

Query: 251 DATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFG 310
            ATYHNMGGCKEG  SCTSK C+G EVDIMHFSIG+AIPGRLYGGNP+DN EGNGGDRFG
Sbjct: 125 QATYHNMGGCKEGTDSCTSKACRGFEVDIMHFSIGNAIPGRLYGGNPIDNREGNGGDRFG 184

Query: 311 HLVDVYAWTPHCRYLDGMGPSG 332
           HLVD+YAW PHCRYLDG+GPSG
Sbjct: 185 HLVDIYAWNPHCRYLDGLGPSG 206

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548411|ref|XP_002515262.1| conserved hypothetical protein [Ricinus communis] gi|223545742|gb|EEF47246.1| conserved hypothetical protein [Ricinus communis]

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 174/192 (90%)

Query: 141 IGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAE 200
           IGW +SH+ESG+WSC+SDS I++ AEF+PGLITLDG+ADDW+DIDG EFSLLPALDP  +
Sbjct: 18  IGWASSHQESGEWSCDSDSGIQLQAEFRPGLITLDGNADDWKDIDGFEFSLLPALDPDDD 77

Query: 201 HEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGC 260
            EYKGGKM VKALHDG DV+FLLQVDG+Y Y+KG N +CPS+ALMFQIG+ ATYHNMGGC
Sbjct: 78  KEYKGGKMTVKALHDGKDVFFLLQVDGDYAYTKGTNNKCPSVALMFQIGDHATYHNMGGC 137

Query: 261 KEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTP 320
            EG  +CTSKTCKGHEVDIMHFSIG+AIPGRLYGGNP+DN +GNGGDRFGHLVD+YAW P
Sbjct: 138 GEGPDACTSKTCKGHEVDIMHFSIGNAIPGRLYGGNPIDNRDGNGGDRFGHLVDLYAWNP 197

Query: 321 HCRYLDGMGPSG 332
           HCRY+DG+GPSG
Sbjct: 198 HCRYIDGIGPSG 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228739|ref|NP_191796.1| heme binding protein [Arabidopsis thaliana] gi|7340708|emb|CAB82951.1| putative protein [Arabidopsis thaliana] gi|19423876|gb|AAL87316.1| unknown protein [Arabidopsis thaliana] gi|22136956|gb|AAM91707.1| unknown protein [Arabidopsis thaliana] gi|332646823|gb|AEE80344.1| heme binding protein [Arabidopsis thaliana]

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 152/202 (75%), Positives = 173/202 (85%), Gaps = 5/202 (2%)

Query: 131 LLLFVLSTVSIGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFS 190
           LL+F   TV       H+ESG+WSCESDSEI+VLA+F+PG+ITLDGH DDW+DIDGSEF 
Sbjct: 10  LLIFTAETVV-----PHQESGEWSCESDSEIQVLADFRPGIITLDGHNDDWKDIDGSEFP 64

Query: 191 LLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGE 250
           L PALDP ++HEY  GKM VKALHDG D+YFLL++DG Y Y KGEN +CPS+ALMFQIG+
Sbjct: 65  LRPALDPDSDHEYDAGKMTVKALHDGRDIYFLLEIDGNYAYDKGENNKCPSVALMFQIGD 124

Query: 251 DATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFG 310
            ATYHNMGGCKEG  SCTSK C+G EVDIMHFSIG+AIPGRLYGGNP+DN EGNGGDRFG
Sbjct: 125 QATYHNMGGCKEGTDSCTSKACRGFEVDIMHFSIGNAIPGRLYGGNPIDNGEGNGGDRFG 184

Query: 311 HLVDVYAWTPHCRYLDGMGPSG 332
           HLVD+YAW PHCRYLDG+GPSG
Sbjct: 185 HLVDIYAWNPHCRYLDGLGPSG 206

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487547|ref|XP_002277687.2| PREDICTED: uncharacterized protein LOC100244357 [Vitis vinifera] gi|296089782|emb|CBI39601.3| unnamed protein product [Vitis vinifera]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 148/201 (73%), Positives = 173/201 (86%)

Query: 132 LLFVLSTVSIGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSL 191
           L+ +L +      NSH+ESG+WSCE D E R+ AE+KPGL+TLDGHADDW D+DG E SL
Sbjct: 9   LILILGSTQTHLANSHQESGEWSCEPDLETRIHAEYKPGLVTLDGHADDWSDVDGLELSL 68

Query: 192 LPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGED 251
           LPALDP  +H+YKGGKM VKALHDG D++F+LQVDG+Y YSKG N +CPS+ALMFQIGE+
Sbjct: 69  LPALDPDEDHQYKGGKMTVKALHDGKDIFFMLQVDGDYAYSKGNNNKCPSVALMFQIGEN 128

Query: 252 ATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGH 311
           ATYHNMGGCKE    CTSKTC+G+EVDIMHFSIG+AIPGRLYGGNP+DN EGNGGDRFGH
Sbjct: 129 ATYHNMGGCKEEPDKCTSKTCRGNEVDIMHFSIGNAIPGRLYGGNPIDNGEGNGGDRFGH 188

Query: 312 LVDVYAWTPHCRYLDGMGPSG 332
           LVD+YAW PHCR+LDG+GPSG
Sbjct: 189 LVDLYAWNPHCRHLDGLGPSG 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499833|ref|XP_003518741.1| PREDICTED: uncharacterized protein LOC100786799 [Glycine max]

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 150/189 (79%), Positives = 171/189 (90%)

Query: 144 VNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEY 203
           V SHEESG WSCES+SEIRV  EFKPG+ITLDGHADDW+DIDGS F LLPALDP AE+E+
Sbjct: 49  VESHEESGHWSCESESEIRVETEFKPGVITLDGHADDWKDIDGSYFPLLPALDPDAENEF 108

Query: 204 KGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEG 263
           KGGKM+VK++HDG D++FLLQVDG+Y YSKGE+ +CPS+ALMFQIG+ A+YH+MGGCKE 
Sbjct: 109 KGGKMSVKSVHDGRDIFFLLQVDGDYAYSKGESNKCPSVALMFQIGDSASYHDMGGCKEH 168

Query: 264 IGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCR 323
             SCT KTCKGHEVDIMHFSIGSAIPGRLYGGNP+DN +GNGGDRFGHLVD+YAW PHCR
Sbjct: 169 STSCTDKTCKGHEVDIMHFSIGSAIPGRLYGGNPLDNRDGNGGDRFGHLVDLYAWNPHCR 228

Query: 324 YLDGMGPSG 332
           YLDG+GP G
Sbjct: 229 YLDGIGPPG 237

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819855|emb|CAN71815.1| hypothetical protein VITISV_023420 [Vitis vinifera]

 Score =  333 bits (855), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 147/201 (73%), Positives = 173/201 (86%)

Query: 132 LLFVLSTVSIGWVNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSL 191
           L+ +L +      NSH+ESG+WSCE D E R+ AE+KPGL+TLDGHADDW D+DG + SL
Sbjct: 9   LILILGSTQTHLANSHQESGEWSCEPDLETRIHAEYKPGLVTLDGHADDWSDVDGLDLSL 68

Query: 192 LPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGED 251
           LPALDP  +H+YKGGKM VKALHDG D++F+LQVDG+Y YSKG N +CPS+ALMFQIGE+
Sbjct: 69  LPALDPDEDHQYKGGKMTVKALHDGKDIFFMLQVDGDYAYSKGNNNKCPSVALMFQIGEN 128

Query: 252 ATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGH 311
           ATYHNMGGCKE    CTSKTC+G+EVDIMHFSIG+AIPGRLYGGNP+DN EGNGGDRFGH
Sbjct: 129 ATYHNMGGCKEEPDKCTSKTCRGNEVDIMHFSIGNAIPGRLYGGNPIDNGEGNGGDRFGH 188

Query: 312 LVDVYAWTPHCRYLDGMGPSG 332
           LVD+YAW PHCR+LDG+GPSG
Sbjct: 189 LVDLYAWNPHCRHLDGLGPSG 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534742|ref|XP_003535911.1| PREDICTED: uncharacterized protein LOC100798285 [Glycine max]

 Score =  323 bits (828), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 147/189 (77%), Positives = 168/189 (88%)

Query: 144 VNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEY 203
           V SHEESG WSCES+SEIRV AEFK G+ITLDGH DDW+DIDGS F LLPALDP AE+E+
Sbjct: 17  VESHEESGHWSCESESEIRVEAEFKYGVITLDGHTDDWKDIDGSYFPLLPALDPDAENEF 76

Query: 204 KGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEG 263
           KGGK+ VK++HDG D++FLLQVDG+Y YSKGE+ +CPS+ALMFQIG+ A+YHNMGGC+E 
Sbjct: 77  KGGKITVKSVHDGRDIFFLLQVDGDYAYSKGESNKCPSVALMFQIGDGASYHNMGGCEEH 136

Query: 264 IGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCR 323
             SCT K+CKGHEVDIMHFSIGSAIPGRLYGGNP+DN  GNGGDRFGHLVD+YAW PHCR
Sbjct: 137 PTSCTDKSCKGHEVDIMHFSIGSAIPGRLYGGNPLDNRYGNGGDRFGHLVDLYAWNPHCR 196

Query: 324 YLDGMGPSG 332
           YLDG+GP G
Sbjct: 197 YLDGIGPPG 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436413|ref|XP_004135987.1| PREDICTED: uncharacterized protein LOC101219938 [Cucumis sativus]

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 147/189 (77%), Positives = 169/189 (89%), Gaps = 2/189 (1%)

Query: 144 VNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEY 203
           V SH+ESG+WSCESDS+I ++AEF+PG+ITLDGHADDW DIDG EFSLLPALDP  + EY
Sbjct: 20  VKSHQESGEWSCESDSDIGIVAEFRPGIITLDGHADDWNDIDGFEFSLLPALDPDEDKEY 79

Query: 204 KGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEG 263
            GGKM VKALHDG DV+FLLQVDG+Y YSKG++++CPS+ALMFQIGE ATYH+MGGCKEG
Sbjct: 80  SGGKMTVKALHDGRDVFFLLQVDGQYRYSKGDSSKCPSVALMFQIGESATYHSMGGCKEG 139

Query: 264 IGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCR 323
             +CT+KTCKG+EVD+MHFSIG+AIPGRLYGGN VD   G GGDRFGHLVDVYAW PHCR
Sbjct: 140 KDTCTNKTCKGYEVDLMHFSIGNAIPGRLYGGNNVD--IGTGGDRFGHLVDVYAWNPHCR 197

Query: 324 YLDGMGPSG 332
           YLDG+GPSG
Sbjct: 198 YLDGIGPSG 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442211|ref|XP_003591383.1| hypothetical protein MTR_1g086810 [Medicago truncatula] gi|355480431|gb|AES61634.1| hypothetical protein MTR_1g086810 [Medicago truncatula]

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 145/189 (76%), Positives = 168/189 (88%)

Query: 144 VNSHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEY 203
           V SHEESG WSCE+ SEI V +EF+PG+ITLDGHADDW+DIDGS FSLL ALDP AE+E+
Sbjct: 19  VYSHEESGPWSCETGSEIHVESEFQPGVITLDGHADDWKDIDGSHFSLLLALDPDAENEF 78

Query: 204 KGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEG 263
            GGKM VK++HDG D++FLLQVDG+Y YS GE+ +CPS+ALMFQIG+ A+YHNMGGC+E 
Sbjct: 79  NGGKMTVKSVHDGRDIFFLLQVDGDYAYSNGESKKCPSVALMFQIGDGASYHNMGGCEEH 138

Query: 264 IGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCR 323
             SCT+KTCKGHEVDIMHFSIG+AIPGRLYGGNP+DN +GNGGDRFGHLVD+YAW PHCR
Sbjct: 139 STSCTNKTCKGHEVDIMHFSIGNAIPGRLYGGNPIDNRDGNGGDRFGHLVDLYAWNPHCR 198

Query: 324 YLDGMGPSG 332
           YLDG GPSG
Sbjct: 199 YLDGTGPSG 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
TAIR|locus:2096064	361	AT3G62370 [Arabidopsis thalian	0.539	0.515	0.790	1.8e-87
TAIR|locus:2132168	725	AT4G02010 [Arabidopsis thalian	0.371	0.176	0.429	2.8e-22

TAIR|locus:2096064 AT3G62370 [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 147/186 (79%), Positives = 167/186 (89%)

Query:   147 HEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGG 206
             H+ESG+WSCESDSEI+VLA+F+PG+ITLDGH DDW+DIDGSEF L PALDP ++HEY  G
Sbjct:    21 HQESGEWSCESDSEIQVLADFRPGIITLDGHNDDWKDIDGSEFPLRPALDPDSDHEYDAG 80

Query:   207 KMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGS 266
             KM VKALHDG D+YFLL++DG Y Y KGEN +CPS+ALMFQIG+ ATYHNMGGCKEG  S
Sbjct:    81 KMTVKALHDGRDIYFLLEIDGNYAYDKGENNKCPSVALMFQIGDQATYHNMGGCKEGTDS 140

Query:   267 CTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTPHCRYLD 326
             CTSK C+G EVDIMHFSIG+AIPGRLYGGNP+DN EGNGGDRFGHLVD+YAW PHCRYLD
Sbjct:   141 CTSKACRGFEVDIMHFSIGNAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWNPHCRYLD 200

Query:   327 GMGPSG 332
             G+GPSG
Sbjct:   201 GLGPSG 206

GO:0020037 "heme binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2132168 AT4G02010 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
 Identities = 55/128 (42%), Positives = 67/128 (52%)

Query:     1 MDITPHTGISFSASDAAAINFSLTTHKVHFDSTLVGDYKLLNFTWFEXXXXXXXXXXXXX 60
             MDITPH+GISFSAS A+AIN SL +HK+ F  TLVGDYKLLN TWFE             
Sbjct:   221 MDITPHSGISFSASQASAINSSLISHKIQFSPTLVGDYKLLNLTWFEAPAPSQAPLVASS 280

Query:    61 XMKAPTHRASPSLPSSTSNKGKHSNXXXXXXXXXXXXXXXXXSVLIICSCAFRRRNSKAS 120
               KAP+  +S +    +  K +H N                 +VL+ICS A R   +   
Sbjct:   281 PHKAPSQGSSATTSVRSPGKKRHPNLILIFSIAAGVLILAIITVLVICSRALREEKAPDP 340

Query:   121 PKETAKPR 128
              KE  KPR
Sbjct:   341 HKEAVKPR 348

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00140641 hypothetical protein (363 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	345
pfam09459	180	pfam09459, EB_dh, Ethylbenzene dehydrogenase	2e-20
smart00887	209	smart00887, EB_dh, Ethylbenzene dehydrogenase	7e-16
cd00241	158	cd00241, DOMON_like, Domon-like ligand-binding dom	9e-05

>gnl|CDD|220250 pfam09459, EB_dh, Ethylbenzene dehydrogenase

 Score = 86.7 bits (215), Expect = 2e-20
 Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 30/146 (20%)

Query: 178 ADDWEDIDGSEFSLLPALDPHAEHEYKGGKMN--VKALHDGHDVYFLLQVDGE---YVYS 232
           A DW      E  L P  + + E + KG      VKA +DG ++YF L            
Sbjct: 1   APDWSKAPPVEIPLYPGPNVYPEPDPKGATKPVTVKAAYDGENIYFRLSWKDPTRSLEKQ 60

Query: 233 KGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRL 292
             ++     +A+MF  G+       G                       F  G+A  GR 
Sbjct: 61  GEDDYYEDKVAVMFPDGKVTPAAGAGCWLS-------------CHKDARFPAGAAGRGRK 107

Query: 293 YGGNPVDNSEGNGGDRFGHLVDVYAW 318
           Y G+             G  VD++ W
Sbjct: 108 YMGDS------------GQPVDLWHW 121

Eythylbenzene dehydrogenase is a heterotrimer of three subunits that catalyzes the anaerobic degradation of hydrocarbons. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria. Length = 180

>gnl|CDD|214885 smart00887, EB_dh, Ethylbenzene dehydrogenase

 Score = 74.9 bits (184), Expect = 7e-16
 Identities = 23/157 (14%), Positives = 35/157 (22%), Gaps = 6/157 (3%)

Query: 178 ADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENT 237
           A DW     SE  L        E           AL    D         +Y    G   
Sbjct: 1   APDWSKAPPSEIPLFYPGQSAVEWVLVKDDHGGYALFKWGDACASCHKVPDYAADDGWKM 60

Query: 238 RCPS-IALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGS-AIPGRLYGG 295
                +  +F   + A   N+            +            S G     G + G 
Sbjct: 61  LAGGKLEPLFWEDKTADVPNIVQIAYDADGLAVRFPLKAPGLPATASAGDMWHMGAVRGP 120

Query: 296 NPVDNSEGNGGDRFGHLVDVYAWTPHCRYLDGMGPSG 332
             +   +     + G  V+   W         M  + 
Sbjct: 121 VAIMLDD----GKVGEAVNAGYWGGCHGDARTMAGAA 153

Eythylbenzene dehydrogenase is a heterotrimer of three subunits that catalyses the anaerobic degradation of hydrocarbons. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria. Length = 209

>gnl|CDD|187675 cd00241, DOMON_like, Domon-like ligand-binding domains

 Score = 42.2 bits (98), Expect = 9e-05
 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 190 SLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSK---GENTRCPSIALMF 246
           +L                  VK   DG  +YFL++V  + +              + L F
Sbjct: 2   ALDIDPSGLGGGGPGDLSATVKLAWDGEYLYFLVEVTDDVLRDTAALSLVWDGDGVELFF 61

Query: 247 QIGEDATYHNMGG 259
               D T  N  G
Sbjct: 62  DPDNDGTDGNAFG 74

DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	345
PF09459	261	EB_dh: Ethylbenzene dehydrogenase; InterPro: IPR01	99.62
TIGR03477	205	DMSO_red_II_gam DMSO reductase family type II enzy	98.25
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	97.35
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	96.93
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	96.73
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	95.55
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	94.34
PF03302	397	VSP: Giardia variant-specific surface protein; Int	94.22
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	93.79
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	93.63
PF06697	278	DUF1191: Protein of unknown function (DUF1191); In	93.48
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	93.41
PF15102	146	TMEM154: TMEM154 protein family	93.14
PF06452	185	DUF1083: Domain of unknown function (DUF1083); Int	91.58
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	91.37
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	91.0
PF10873	155	DUF2668: Protein of unknown function (DUF2668); In	90.66
PF15069	143	FAM163: FAM163 family	90.61
PF07213	79	DAP10: DAP10 membrane protein; InterPro: IPR009861	90.43
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	90.35
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.31
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	90.29
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	90.2
PF05808	162	Podoplanin: Podoplanin; InterPro: IPR008783 This f	90.09
PF07204	98	Orthoreo_P10: Orthoreovirus membrane fusion protei	89.15
PF15345	233	TMEM51: Transmembrane protein 51	88.78
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	88.17
cd00005	186	CBM9 Family 9 carbohydrate-binding module (CBM), p	87.89
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	87.47
PF05393	94	Hum_adeno_E3A: Human adenovirus early E3A glycopro	86.74
COG3889	872	Predicted solute binding protein [General function	86.51
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	83.09
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	82.53
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	81.83
PF12877	684	DUF3827: Domain of unknown function (DUF3827); Int	81.51
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	80.84
PHA03265	402	envelope glycoprotein D; Provisional	80.83

>PF09459 EB_dh: Ethylbenzene dehydrogenase; InterPro: IPR019020 This entry represents a haem-binding domain found in cytochromes b558/566 (subunit A), c-551 and c-552, as well as in members of the type-II members of the microbial dimethyl sulphoxide (DMSO) reductase family

Probab=99.62  E-value=1.2e-16  Score=150.12  Aligned_cols=128  Identities=32%  Similarity=0.580  Sum_probs=60.6

Q ss_pred             ccccccccCccccccccCCCC--CCCCCCCCeeEEEEeecCccEEEEEEecC---cee------eec--CCcccCCceee
Q 019150          178 ADDWEDIDGSEFSLLPALDPH--AEHEYKGGKMNVKALHDGHDVYFLLQVDG---EYV------YSK--GENTRCPSIAL  244 (345)
Q Consensus       178 ~~dwk~V~G~~~~~~~al~~~--~~~~y~~g~~~vk~~~d~~~~~f~~~v~g---~y~------~~~--~~~~~c~~~~~  244 (345)
                      +.+|++|+..+++|.|.+++.  +..++....|+|||+|||++||||||.+.   ++.      |.+  ....-|..+|+
T Consensus         1 ~~~W~~~p~~~v~L~pg~~~~p~~~~~~~~~~v~VkAa~dg~~Iyfll~W~d~t~~~~~~p~~~~~~~~~~~~yeDk~Av   80 (261)
T PF09459_consen    1 DPDWSKAPPVEVPLYPGQSSYPEPPPKGGTIPVEVKAAHDGENIYFLLEWPDPTRSYERHPDGGWVQAGEDDYYEDKVAV   80 (261)
T ss_dssp             -HHHHTS-EEEEE-EE--GGG----T-----EEEEEEEE-SSEEEEEEEEE-----S------------STT----EEEE
T ss_pred             CchhccCCCeEEEECCCccCCccccCCCCcEEEEEEEEECCCeEEEEEEecCCCCCccccccccccccCCCCcCcceEEE
Confidence            368999999999999996543  44588889999999999999999999988   233      223  56778899999


Q ss_pred             eeeecCCceeeecCCCCCCCCcccccccCCceeeEEEEEeccccCccccCCCCCCCCCCCCCCccccceeeeecCC----
Q 019150          245 MFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTP----  320 (345)
Q Consensus       245 m~~~g~~a~~~~mggc~~~~~~c~~~~c~~~~vdi~h~~~~~~~~g~~yg~n~~d~~~g~g~d~~~~~~d~y~~~p----  320 (345)
                      ||.+| ++.++.+.||        ..+|...+.|+.|+.+++   ||.|-+..            |+++|++.|++    
T Consensus        81 mf~~g-~v~~~~~~Gc--------~~~ch~~~~~~p~~~~~~---~~ky~~~~------------g~~vdlW~Wka~r~~  136 (261)
T PF09459_consen   81 MFSDG-DVPYFGQDGC--------WHTCHKPLRDMPAAPIGR---GRKYMGDS------------GEPVDLWHWKASRSG  136 (261)
T ss_dssp             EE----------------------------ESST--T--GG-------GT-BT------------TB-EEEEEEET----
T ss_pred             Eeeec-cccccccccc--------cccccCCcccccCCCccc---ceeeeCCC------------CeEEEEEEecccccc
Confidence            99999 8888866554        678999999999998887   88898874            99999999999    


Q ss_pred             ---------cccccCCCC
Q 019150          321 ---------HCRYLDGMG  329 (345)
Q Consensus       321 ---------~cr~~d~~~  329 (345)
                               +|||.+|.|
T Consensus       137 ~~~d~~~~~~r~~~~G~g  154 (261)
T PF09459_consen  137 MADDGYVFGKRRYDAGYG  154 (261)
T ss_dssp             ------------------
T ss_pred             cccccccccccccccccc
Confidence                     899999998

The DMSO reductase family is a large and rapidly expanding group of enzymes found in bacteria and archaea that share a common form of molybdenum cofactor known as bis(molybdopterin guanine dinucleotide)Mo []. In addition to the molybdopterin subunit, these enzymes also contain an iron-sulphur subunit. These include two distinct but very closely related periplasmic proteins of anaerobic respiration: selenate reductase and chlorate reductase []. Other proteins containing this subunit include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase [, , ]. One member of the DMSO reductase family is eythylbenzene dehydrogenase, which is a heterotrimer of three subunits that catalyses the anaerobic degradation of hydrocarbons (alpha, beta and gamma subunits). This entry matches the gamma subunit, whose structure is known []. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria.; GO: 0020037 heme binding; PDB: 2IVF_C.

>TIGR03477 DMSO_red_II_gam DMSO reductase family type II enzyme, heme b subunit

Probab=98.25  E-value=3.8e-06  Score=78.14  Aligned_cols=103  Identities=20%  Similarity=0.313  Sum_probs=76.8

Q ss_pred             ceeecCCcccccccccCccccccccCCCCCCCCCCCC--eeEEEEeecCccEEEEEEecCceeeecCC--cccCCceeee
Q 019150          170 GLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGG--KMNVKALHDGHDVYFLLQVDGEYVYSKGE--NTRCPSIALM  245 (345)
Q Consensus       170 G~ItlDG~~~dwk~V~G~~~~~~~al~~~~~~~y~~g--~~~vk~~~d~~~~~f~~~v~g~y~~~~~~--~~~c~~~~~m  245 (345)
                      |.|.+|-.+..|++++..+..|.|+---.+...|++-  +|.|||+||++.|||+|+=+-+=+=....  +.-=-.||++
T Consensus         9 g~~~~dp~d~vW~~ap~~~V~l~~q~~~~pn~~~~~~~~~v~VkA~~n~~~Iyf~l~W~D~T~d~~~~~~d~F~DgvAvq   88 (205)
T TIGR03477         9 GDLPLDPDAPVWAGAPATEVPMVSAPLVHPFLADTGVIKTLDVQAARNGERLAVRLKWADETHDVNTDGTDSFVDGVAVQ   88 (205)
T ss_pred             CCCCCCcchhHHhcCCcEEEEeccccccccCccCCCcceEEEEEEEECCCeEEEEEEECCCCCccccccccccCcceEEE
Confidence            6888888899999999999999776553223334333  79999999999999999876543211111  1222469999


Q ss_pred             eeecCCc-eeeecCCCCCCCCcccccccCCceeeEEEEEec
Q 019150          246 FQIGEDA-TYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIG  285 (345)
Q Consensus       246 ~~~g~~a-~~~~mggc~~~~~~c~~~~c~~~~vdi~h~~~~  285 (345)
                      |++..+. .|.-||+             .+|.|.|-||.-.
T Consensus        89 FP~~~~~~p~i~MG~-------------~~~pVniw~W~a~  116 (205)
T TIGR03477        89 FPVSRGSLPYITMGA-------------ADNPVNIWYWKAD  116 (205)
T ss_pred             cccCCCccCceecCC-------------CCCceEEEEECCC
Confidence            9999877 7888886             5789999999764

This model represents a heme b-binding subunit, typically called the gamma subunit, of various proteins that also contain a molybdopterin subunit and an iron-sulfur protein. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=97.35  E-value=0.00017  Score=64.82  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=17.1

Q ss_pred             cceEEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150           85 NLILLFGIGTGLLITAIISVLIICSCAFRRRNS  117 (345)
Q Consensus        85 S~iaIIGIavG~~vllLL~vlilcLC~~rRkkk  117 (345)
                      ++..|||++||.++.+||++++|++++|+|+||
T Consensus        47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~kk   79 (154)
T PF04478_consen   47 NKNIVIGVVVGVGGPILLGILALVFIFCIRRKK   79 (154)
T ss_pred             CccEEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence            456778888886653333333333333333333

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=96.93  E-value=0.00034  Score=60.74  Aligned_cols=41  Identities=24%  Similarity=0.268  Sum_probs=26.3

Q ss_pred             CCCCCCccceEEeehhHHHHHHHHHHHHHhhheeccccCCC
Q 019150           78 SNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSK  118 (345)
Q Consensus        78 Sskkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkkkK  118 (345)
                      +.-..+++..+|+||++|.++.+++++++|.||.+||+||.
T Consensus        55 ~ql~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~   95 (122)
T PF01102_consen   55 SQLVHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS   95 (122)
T ss_dssp             -SSSSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred             cccccCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34466888999999999988855555556666666555554

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=96.73  E-value=0.0011  Score=55.07  Aligned_cols=35  Identities=11%  Similarity=0.021  Sum_probs=23.0

Q ss_pred             CCCCCCccceEEeehhHHHHHHHHHHHHHhhheec
Q 019150           78 SNKGKHSNLILLFGIGTGLLITAIISVLIICSCAF  112 (345)
Q Consensus        78 Sskkk~lS~iaIIGIavG~~vllLL~vlilcLC~~  112 (345)
                      +.++..++..+|+||++|+++++.+++.+|++++.
T Consensus        57 st~~~~ls~gaiagi~vg~~~~v~~lv~~l~w~f~   91 (96)
T PTZ00382         57 GANRSGLSTGAIAGISVAVVAVVGGLVGFLCWWFV   91 (96)
T ss_pred             ccCCCCcccccEEEEEeehhhHHHHHHHHHhheeE
Confidence            34556788999999999988654444434443333

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=95.55  E-value=0.015  Score=41.96  Aligned_cols=28  Identities=11%  Similarity=0.068  Sum_probs=14.4

Q ss_pred             cceEE-eehhHHHHHHHHHHHHHhhheec
Q 019150           85 NLILL-FGIGTGLLITAIISVLIICSCAF  112 (345)
Q Consensus        85 S~iaI-IGIavG~~vllLL~vlilcLC~~  112 (345)
                      +..+| +|+++..++++++++++|++.++
T Consensus         9 ~~vaIa~~VvVPV~vI~~vl~~~l~~~~r   37 (40)
T PF08693_consen    9 NTVAIAVGVVVPVGVIIIVLGAFLFFWYR   37 (40)
T ss_pred             ceEEEEEEEEechHHHHHHHHHHhheEEe
Confidence            33444 55666666555555544444443

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=94.34  E-value=0.015  Score=59.68  Aligned_cols=26  Identities=19%  Similarity=0.415  Sum_probs=0.0

Q ss_pred             EEeehhHHHHHHHHHHHH--Hhhheecc
Q 019150           88 LLFGIGTGLLITAIISVL--IICSCAFR  113 (345)
Q Consensus        88 aIIGIavG~~vllLL~vl--ilcLC~~r  113 (345)
                      +++++++|.+++++|+++  |+|+|++|
T Consensus       353 ~~l~vVlgvavlivVv~viv~vc~~~rr  380 (439)
T PF02480_consen  353 ALLGVVLGVAVLIVVVGVIVWVCLRCRR  380 (439)
T ss_dssp             ----------------------------
T ss_pred             chHHHHHHHHHHHHHHHHHhheeeeehh
Confidence            333344444443333333  44444433

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein)

Probab=94.22  E-value=0.034  Score=56.08  Aligned_cols=39  Identities=15%  Similarity=0.101  Sum_probs=27.7

Q ss_pred             CCCCCCccceEEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150           78 SNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRN  116 (345)
Q Consensus        78 Sskkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkk  116 (345)
                      +.+++.||..||+||+|+++|++--||-+||+|+..|+|
T Consensus       358 ~~n~s~LstgaIaGIsvavvvvVgglvGfLcWwf~crgk  396 (397)
T PF03302_consen  358 STNKSGLSTGAIAGISVAVVVVVGGLVGFLCWWFICRGK  396 (397)
T ss_pred             CcccccccccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence            335578999999999999887665555566655554444

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=93.79  E-value=0.073  Score=47.52  Aligned_cols=28  Identities=18%  Similarity=0.482  Sum_probs=15.1

Q ss_pred             cceEEeehhHHHHHHHHHHHHHhhheec
Q 019150           85 NLILLFGIGTGLLITAIISVLIICSCAF  112 (345)
Q Consensus        85 S~iaIIGIavG~~vllLL~vlilcLC~~  112 (345)
                      ...+|+||++|++++++++++++|.|++
T Consensus        77 ~~~iivgvi~~Vi~Iv~~Iv~~~Cc~c~  104 (179)
T PF13908_consen   77 ITGIIVGVICGVIAIVVLIVCFCCCCCC  104 (179)
T ss_pred             eeeeeeehhhHHHHHHHhHhhheecccc
Confidence            4556677777766554444444443343

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=93.63  E-value=0.034  Score=47.51  Aligned_cols=20  Identities=35%  Similarity=0.614  Sum_probs=9.4

Q ss_pred             HHHHHHHHhhheeccccCCC
Q 019150           99 TAIISVLIICSCAFRRRNSK  118 (345)
Q Consensus        99 llLL~vlilcLC~~rRkkkK  118 (345)
                      ++||+++++++|..|||+||
T Consensus        10 ~~i~l~~~~~~~~~rRR~r~   29 (130)
T PF12273_consen   10 VAILLFLFLFYCHNRRRRRR   29 (130)
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            34444444555554444444

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function

Probab=93.48  E-value=0.085  Score=51.70  Aligned_cols=36  Identities=19%  Similarity=0.458  Sum_probs=21.2

Q ss_pred             CCCccce-EEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150           81 GKHSNLI-LLFGIGTGLLITAIISVLIICSCAFRRRN  116 (345)
Q Consensus        81 kk~lS~i-aIIGIavG~~vllLL~vlilcLC~~rRkk  116 (345)
                      +++.+.+ +|+|.++|.++|.||.++++++.+.+|+|
T Consensus       207 ~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~  243 (278)
T PF06697_consen  207 RKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRYKRKK  243 (278)
T ss_pred             CCcceeEEEEEEehHHHHHHHHHHHHHHhhhhhhHHH
Confidence            3333333 46677777777777766666666554433

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=93.41  E-value=0.022  Score=55.85  Aligned_cols=25  Identities=8%  Similarity=0.125  Sum_probs=0.0

Q ss_pred             cccccccceEEEEEEecCCCCCCCCCCC
Q 019150           30 FDSTLVGDYKLLNFTWFEPPAPSQAPLA   57 (345)
Q Consensus        30 ~n~~lfGdY~vinvt~f~P~~pSpcP~~   57 (345)
                      |...+-=+|+|.+|++.   +-..|-..
T Consensus        87 f~~am~pef~V~svsv~---~~G~C~~~  111 (290)
T PF05454_consen   87 FVRAMGPEFKVKSVSVI---PIGSCQDT  111 (290)
T ss_dssp             ----------------------------
T ss_pred             HHHHhCCCCceeEEEEE---EeeccCCC
Confidence            44556778999999995   44778764

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PF15102 TMEM154: TMEM154 protein family

Probab=93.14  E-value=0.27  Score=44.29  Aligned_cols=12  Identities=25%  Similarity=0.293  Sum_probs=5.8

Q ss_pred             CccceEEeehhH
Q 019150           83 HSNLILLFGIGT   94 (345)
Q Consensus        83 ~lS~iaIIGIav   94 (345)
                      ....+++|+|-.
T Consensus        54 q~efiLmIlIP~   65 (146)
T PF15102_consen   54 QLEFILMILIPL   65 (146)
T ss_pred             CcceEEEEeHHH
Confidence            334455555543

>PF06452 DUF1083: Domain of unknown function (DUF1083); InterPro: IPR010502 This entry represents the family 9 carbohydrate-binding module (CBD9), which exhibit an immunoglobulin-like beta-sandwich fold, with an additional beta-strand at the N terminus []

Probab=91.58  E-value=0.24  Score=42.72  Aligned_cols=54  Identities=17%  Similarity=0.356  Sum_probs=34.8

Q ss_pred             cCCcc-cccccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEecCcee
Q 019150          174 LDGHA-DDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYV  230 (345)
Q Consensus       174 lDG~~-~dwk~V~G~~~~~~~al~~~~~~~y~~g~~~vk~~~d~~~~~f~~~v~g~y~  230 (345)
                      +||.. ++|++.+  .+.+.....+..... +.=+.+||+++|.+.+||+++|--+.-
T Consensus         1 IDG~~d~~W~~a~--~~~~~~~~~~~~~~~-~~~s~~~~~~wD~~~LY~~~~v~D~~~   55 (185)
T PF06452_consen    1 IDGKLDAEWKGAP--PITIFYQWWGSDWSG-EDLSTRVRLLWDDENLYFAFEVTDDTL   55 (185)
T ss_dssp             SSSS--GGGGGS---EEE--EEEES-T--T-TS-EEEEEEEE-SSEEEEEEEEE-SS-
T ss_pred             CCCcccchhcCCc--eEeeeeeecccccCC-CCccEEEEEEEeCCeEEEEEEEECCcc
Confidence            48998 3599998  555666666554444 667899999999999999999987773

Bacterial extracellular cellulases and hemicellulases are involved in the hydrolysis of the major structural polysaccharides of plant cell walls. These are usually modular enzymes that contain catalytic and non-catalytic domains. The CBD9 domain binds to cellulose, xylan, as well as to a range of soluble di- and mono-saccharides, and is found in cellulose- and xylan-degrading enzymes, such as endo-1,4-beta-xylanase (3.2.1.8 from EC) [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0016052 carbohydrate catabolic process; PDB: 1I82_A 1I8A_A 1I8U_A.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=91.37  E-value=0.3  Score=44.38  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             CCCCCCCCccceEEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150           76 STSNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNS  117 (345)
Q Consensus        76 ssSskkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkkk  117 (345)
                      .-|++.|..-..++|||.+..+ +++++++++|.+++||++=
T Consensus        42 GlS~knknIVIGvVVGVGg~il-l~il~lvf~~c~r~kktdf   82 (154)
T PF04478_consen   42 GLSSKNKNIVIGVVVGVGGPIL-LGILALVFIFCIRRKKTDF   82 (154)
T ss_pred             CCCcCCccEEEEEEecccHHHH-HHHHHhheeEEEecccCcc
Confidence            3556777888999999877655 5566666888888888883

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=91.00  E-value=0.15  Score=49.22  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=19.3

Q ss_pred             EEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150           88 LLFGIGTGLLITAIISVLIICSCAFRRRNS  117 (345)
Q Consensus        88 aIIGIavG~~vllLL~vlilcLC~~rRkkk  117 (345)
                      -+|-|+||++++.||+++++.++..|||++
T Consensus       271 ~~vPIaVG~~La~lvlivLiaYli~Rrr~~  300 (306)
T PF01299_consen  271 DLVPIAVGAALAGLVLIVLIAYLIGRRRSR  300 (306)
T ss_pred             chHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence            467799998886555555555555544444

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known []

Probab=90.66  E-value=0.17  Score=45.83  Aligned_cols=36  Identities=19%  Similarity=0.446  Sum_probs=25.2

Q ss_pred             CCCccceEEeehhHHHHH-HHHHHHHHhhheeccccC
Q 019150           81 GKHSNLILLFGIGTGLLI-TAIISVLIICSCAFRRRN  116 (345)
Q Consensus        81 kk~lS~iaIIGIavG~~v-llLL~vlilcLC~~rRkk  116 (345)
                      ..-++..||.||+.|+++ +.++..+.+|+|.+-++.
T Consensus        55 ~~~lsgtAIaGIVfgiVfimgvva~i~icvCmc~kn~   91 (155)
T PF10873_consen   55 GDVLSGTAIAGIVFGIVFIMGVVAGIAICVCMCMKNS   91 (155)
T ss_pred             ccccccceeeeeehhhHHHHHHHHHHHHHHhhhhhcC
Confidence            445778999999999988 444455566666665444

>PF15069 FAM163: FAM163 family

Probab=90.61  E-value=0.3  Score=43.90  Aligned_cols=25  Identities=16%  Similarity=0.380  Sum_probs=12.6

Q ss_pred             ceEEeehhHHHHHHHHHHHHHhhhee
Q 019150           86 LILLFGIGTGLLITAIISVLIICSCA  111 (345)
Q Consensus        86 ~iaIIGIavG~~vllLL~vlilcLC~  111 (345)
                      +++|.|.++..++||+ ++++||+|+
T Consensus         5 TvVItGgILAtVILLc-IIaVLCYCR   29 (143)
T PF15069_consen    5 TVVITGGILATVILLC-IIAVLCYCR   29 (143)
T ss_pred             eEEEechHHHHHHHHH-HHHHHHHHh
Confidence            4555555444443333 333677666

>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins

Probab=90.43  E-value=0.25  Score=40.47  Aligned_cols=40  Identities=25%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             CCCCCccceEEeehhHHHHHHHHHHHHHhhheeccccCCC
Q 019150           79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSK  118 (345)
Q Consensus        79 skkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkkkK  118 (345)
                      +.=-.++..+++||+.|-+++-+|+++..+.|.+.|+|++
T Consensus        26 s~C~~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~   65 (79)
T PF07213_consen   26 SGCYPLSPGLLAGIVAADAVLTLLIVLVVYYCARPRRRPT   65 (79)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Confidence            3445567889999999999988888878888876555443

In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=90.35  E-value=0.082  Score=54.35  Aligned_cols=36  Identities=19%  Similarity=0.347  Sum_probs=0.0

Q ss_pred             CCCccceEEeehhHHHHH-HHHHHHHHhhheeccccC
Q 019150           81 GKHSNLILLFGIGTGLLI-TAIISVLIICSCAFRRRN  116 (345)
Q Consensus        81 kk~lS~iaIIGIavG~~v-llLL~vlilcLC~~rRkk  116 (345)
                      +...-+.+|+|++++.++ ++++++++.|-+++++++
T Consensus       350 ~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~  386 (439)
T PF02480_consen  350 RGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD  386 (439)
T ss_dssp             -------------------------------------
T ss_pred             cccchHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence            334456666677777665 888888999999998777

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.31  E-value=0.3  Score=47.57  Aligned_cols=20  Identities=15%  Similarity=0.164  Sum_probs=11.7

Q ss_pred             CCCCCccceEEeehhHHHHH
Q 019150           79 NKGKHSNLILLFGIGTGLLI   98 (345)
Q Consensus        79 skkk~lS~iaIIGIavG~~v   98 (345)
                      +++||+++..||.|..++++
T Consensus       219 ~~~~~l~~G~VVlIslAiAL  238 (281)
T PF12768_consen  219 KGGKKLSRGFVVLISLAIAL  238 (281)
T ss_pred             cccccccceEEEEEehHHHH
Confidence            34577777776655554443

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=90.29  E-value=0.15  Score=40.60  Aligned_cols=29  Identities=17%  Similarity=0.218  Sum_probs=12.5

Q ss_pred             EeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150           89 LFGIGTGLLITAIISVLIICSCAFRRRNS  117 (345)
Q Consensus        89 IIGIavG~~vllLL~vlilcLC~~rRkkk  117 (345)
                      |++++++++++++++++++++|.+|+++.
T Consensus         2 ii~~~~~g~~~ll~~v~~~~~~~rr~~~~   30 (75)
T PF14575_consen    2 IIASIIVGVLLLLVLVIIVIVCFRRCKYS   30 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCTT----
T ss_pred             EEehHHHHHHHHHHhheeEEEEEeeEcCC
Confidence            34444555544444444555555544433

...

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=90.20  E-value=0.22  Score=47.48  Aligned_cols=44  Identities=14%  Similarity=0.173  Sum_probs=30.2

Q ss_pred             cceEeeeeecceeecCCcccccccccCccccccccCCCCCCCCC
Q 019150          160 EIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEY  203 (345)
Q Consensus       160 E~RI~aef~PG~ItlDG~~~dwk~V~G~~~~~~~al~~~~~~~y  203 (345)
                      ..|.....+-+.+|++..-.||.+.++.+..|--.+..|.-..|
T Consensus        99 K~kspk~l~ln~vtie~~k~d~~~~~~~~~~~~L~~~~~~~~~~  142 (221)
T PF08374_consen   99 KKKSPKPLLLNFVTIEESKPDDADNDQKSVTFDLELEEDSMGKY  142 (221)
T ss_pred             cccCCccccccccccccCCcCccccccccceeccccCCCCcccc
Confidence            35666677888899999999999888877655434443333333

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes []

Probab=90.09  E-value=0.089  Score=48.05  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=0.0

Q ss_pred             CCCCccceEEeehhHHHHH-HHHHHHHHhhheec
Q 019150           80 KGKHSNLILLFGIGTGLLI-TAIISVLIICSCAF  112 (345)
Q Consensus        80 kkk~lS~iaIIGIavG~~v-llLL~vlilcLC~~  112 (345)
                      .|..++..+++||++|.++ +.+|.-|+|++.||
T Consensus       122 ek~GL~T~tLVGIIVGVLlaIG~igGIIivvvRK  155 (162)
T PF05808_consen  122 EKDGLSTVTLVGIIVGVLLAIGFIGGIIIVVVRK  155 (162)
T ss_dssp             ----------------------------------
T ss_pred             ccCCcceeeeeeehhhHHHHHHHHhheeeEEeeh
Confidence            3778899999999999998 66666656655554

; GO: 0016021 integral to membrane; PDB: 3IET_X.

>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences

Probab=89.15  E-value=0.16  Score=43.00  Aligned_cols=22  Identities=14%  Similarity=0.366  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHhhheeccccC
Q 019150           95 GLLITAIISVLIICSCAFRRRN  116 (345)
Q Consensus        95 G~~vllLL~vlilcLC~~rRkk  116 (345)
                      |++++++|++|.+++||+.|.|
T Consensus        48 GGG~iLilIii~Lv~CC~~K~K   69 (98)
T PF07204_consen   48 GGGLILILIIIALVCCCRAKHK   69 (98)
T ss_pred             cchhhhHHHHHHHHHHhhhhhh
Confidence            3444444444555555544433

p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].

>PF15345 TMEM51: Transmembrane protein 51

Probab=88.78  E-value=0.44  Score=45.79  Aligned_cols=35  Identities=14%  Similarity=0.156  Sum_probs=17.0

Q ss_pred             CCCCCccceEEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150           79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNS  117 (345)
Q Consensus        79 skkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkkk  117 (345)
                      +.+++.+.+|.|=  ||+++++||+  -|||+.|.|||+
T Consensus        52 ~~ksKt~SVAyVL--VG~Gv~LLLL--SICL~IR~KRr~   86 (233)
T PF15345_consen   52 NLKSKTFSVAYVL--VGSGVALLLL--SICLSIRDKRRR   86 (233)
T ss_pred             cccceeEEEEEeh--hhHHHHHHHH--HHHHHHHHHHHH
Confidence            4555555555553  3444333333  356666544443

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=88.17  E-value=0.29  Score=35.20  Aligned_cols=9  Identities=11%  Similarity=0.305  Sum_probs=4.0

Q ss_pred             eehhHHHHH
Q 019150           90 FGIGTGLLI   98 (345)
Q Consensus        90 IGIavG~~v   98 (345)
                      |||++|.++
T Consensus         6 IaIIv~V~v   14 (38)
T PF02439_consen    6 IAIIVAVVV   14 (38)
T ss_pred             hhHHHHHHH
Confidence            344444444

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>cd00005 CBM9 Family 9 carbohydrate-binding module (CBM), plays a role in microbial degradation of cellulose and hemicellulose found in plants; previously called cellulose-binding domain; the binding sites of the CBMs for which structures have been determined are of two general types: flat surfaces comprising predominantly aromatic residues tryptophan and tyrosine and extended shallow grooves; this domain frequently occurs in tandem

Probab=87.89  E-value=0.77  Score=41.42  Aligned_cols=53  Identities=28%  Similarity=0.488  Sum_probs=37.6

Q ss_pred             eecceeecCCcccc-cccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEec
Q 019150          167 FKPGLITLDGHADD-WEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVD  226 (345)
Q Consensus       167 f~PG~ItlDG~~~d-wk~V~G~~~~~~~al~~~~~~~y~~g~~~vk~~~d~~~~~f~~~v~  226 (345)
                      -..+.+++||..++ |+..+-..-  +-...|.     ++=+-+||+++|...+|++.+|-
T Consensus         5 ~~~~~p~IDG~~de~W~~a~~~~~--~~~~~~~-----~~~~t~~k~lwDd~~LYv~~~v~   58 (186)
T cd00005           5 AKYGTPVIDGQVDDIWKKAKPLET--NTYVEGT-----SGATATVRVLWDEKNLYVLAEVK   58 (186)
T ss_pred             eccCCCeecCccchhHhhCcceee--eeEecCC-----CCcceEEEEEEcCCcEEEEEEEE
Confidence            34567788999777 998765432  1122332     33568999999999999999964

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=87.47  E-value=0.18  Score=39.90  Aligned_cols=9  Identities=11%  Similarity=0.169  Sum_probs=0.0

Q ss_pred             eehhHHHHH
Q 019150           90 FGIGTGLLI   98 (345)
Q Consensus        90 IGIavG~~v   98 (345)
                      +|+++|+++
T Consensus        12 aavIaG~Vv   20 (64)
T PF01034_consen   12 AAVIAGGVV   20 (64)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            444444444

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2

Probab=86.74  E-value=0.4  Score=40.27  Aligned_cols=43  Identities=14%  Similarity=0.132  Sum_probs=21.1

Q ss_pred             CccceEEeehhHHHHHHHHHHHHHhhheeccccCCCCCCCCCC
Q 019150           83 HSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETA  125 (345)
Q Consensus        83 ~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkkkK~ppvet~  125 (345)
                      ..+.+.-+|+-.+.+++++|+++++.+.||++|||..+|+=.+
T Consensus        26 ~~n~~~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPIYrP   68 (94)
T PF05393_consen   26 FVNNWPNLGMWFLVICGIFILLVILWFVCCKKRKRSRRPIYRP   68 (94)
T ss_pred             ecCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc
Confidence            3455666677666666554444333333333334444555443

; GO: 0016021 integral to membrane

>COG3889 Predicted solute binding protein [General function prediction only]

Probab=86.51  E-value=1  Score=49.87  Aligned_cols=27  Identities=11%  Similarity=-0.112  Sum_probs=11.5

Q ss_pred             eEEeehhHHHHHHHHHHHHHhhheecc
Q 019150           87 ILLFGIGTGLLITAIISVLIICSCAFR  113 (345)
Q Consensus        87 iaIIGIavG~~vllLL~vlilcLC~~r  113 (345)
                      ..+.|.+.|.++++++++.+-++++||
T Consensus       844 ttt~~~i~g~i~iiv~LaAla~lLrRR  870 (872)
T COG3889         844 TTTGGGICGPIVIIVGLAALALLLRRR  870 (872)
T ss_pred             cccccccchHHHHHHHHHHHHHHHHhh
Confidence            334444555554333333333344433

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=83.09  E-value=0.39  Score=47.42  Aligned_cols=31  Identities=23%  Similarity=0.352  Sum_probs=19.6

Q ss_pred             ceEEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150           86 LILLFGIGTGLLITAIISVLIICSCAFRRRN  116 (345)
Q Consensus        86 ~iaIIGIavG~~vllLL~vlilcLC~~rRkk  116 (345)
                      ..+|++.++.+++++||+||+.+.++-||||
T Consensus       255 ~t~I~aSiiaIliIVLIMvIIYLILRYRRKK  285 (299)
T PF02009_consen  255 TTAIIASIIAILIIVLIMVIIYLILRYRRKK  285 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556777777777666666666666655544

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=82.53  E-value=1.4  Score=39.35  Aligned_cols=34  Identities=29%  Similarity=0.466  Sum_probs=25.4

Q ss_pred             cceEEeehhHHHHH-HHHHHHHHhhheeccccCCC
Q 019150           85 NLILLFGIGTGLLI-TAIISVLIICSCAFRRRNSK  118 (345)
Q Consensus        85 S~iaIIGIavG~~v-llLL~vlilcLC~~rRkkkK  118 (345)
                      ...++++|++|+++ +++|+++|+|+|+++--+.|
T Consensus        73 ~~~~~~~iivgvi~~Vi~Iv~~Iv~~~Cc~c~~~K  107 (179)
T PF13908_consen   73 PIYFITGIIVGVICGVIAIVVLIVCFCCCCCCLYK  107 (179)
T ss_pred             cccceeeeeeehhhHHHHHHHhHhhheeccccccc
Confidence            36779999999888 66666667778887766555

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=81.83  E-value=0.44  Score=46.95  Aligned_cols=15  Identities=33%  Similarity=0.724  Sum_probs=0.0

Q ss_pred             HHHHHHHhhheeccc
Q 019150          100 AIISVLIICSCAFRR  114 (345)
Q Consensus       100 lLL~vlilcLC~~rR  114 (345)
                      +||+.+++|+|.+||
T Consensus       159 LLIA~iIa~icyrrk  173 (290)
T PF05454_consen  159 LLIAGIIACICYRRK  173 (290)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHHhhhhh
Confidence            334444555555433

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]

Probab=81.51  E-value=2  Score=46.73  Aligned_cols=36  Identities=19%  Similarity=0.382  Sum_probs=21.7

Q ss_pred             CCCCccceEEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150           80 KGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRN  116 (345)
Q Consensus        80 kkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkk  116 (345)
                      +....+++.|||+++-.+++ +|+++|+++|+||++|
T Consensus       263 ~s~~~NlWII~gVlvPv~vV-~~Iiiil~~~LCRk~K  298 (684)
T PF12877_consen  263 KSPPNNLWIIAGVLVPVLVV-LLIIIILYWKLCRKNK  298 (684)
T ss_pred             CCCCCCeEEEehHhHHHHHH-HHHHHHHHHHHhcccc
Confidence            44455788889886665544 4444455555555555

In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=80.84  E-value=0.51  Score=34.21  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=28.3

Q ss_pred             ccceEEeehhHHHHH-HHHHHHHHhhheeccccCCC
Q 019150           84 SNLILLFGIGTGLLI-TAIISVLIICSCAFRRRNSK  118 (345)
Q Consensus        84 lS~iaIIGIavG~~v-llLL~vlilcLC~~rRkkkK  118 (345)
                      .+.---++|++|.++ +.++++++++++.+.+||+|
T Consensus         5 ~~~~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~k   40 (40)
T PF08693_consen    5 SSNSNTVAIAVGVVVPVGVIIIVLGAFLFFWYRRKK   40 (40)
T ss_pred             cCCCceEEEEEEEEechHHHHHHHHHHhheEEeccC
Confidence            346777899999888 88888888888888887765

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PHA03265 envelope glycoprotein D; Provisional

Probab=80.83  E-value=1.5  Score=44.79  Aligned_cols=12  Identities=25%  Similarity=0.443  Sum_probs=6.3

Q ss_pred             CCCCCCCCCCCC
Q 019150           47 EPPAPSQAPLAS   58 (345)
Q Consensus        47 ~P~~pSpcP~~a   58 (345)
                      +|++|.--|+|.
T Consensus       277 ~P~~~~~~~~~~  288 (402)
T PHA03265        277 RPVPPDNHPGFD  288 (402)
T ss_pred             CCCCCCCCCCcc
Confidence            455555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	345
2ivf_C	214	Ethylbenzene dehydrogenase gamma-subunit; anaerobi	4e-18

>2ivf_C Ethylbenzene dehydrogenase gamma-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} Length = 214

 Score = 81.0 bits (199), Expect = 4e-18
 Identities = 23/142 (16%), Positives = 44/142 (30%), Gaps = 24/142 (16%)

Query: 172 ITLDGHADDWEDIDGSEFSLLPA-------LDPHAEHEYKGG---KMNVKALHDGHDVYF 221
           + LD  A  W   + + F + P        + P        G   +++V ALH+G  +  
Sbjct: 12  LLLDLDAPIWAGAESTTFEMFPTPLVMVKEVSPFLALSEGHGVIKRLDVAALHNGSMIAL 71

Query: 222 LLQ-VDGEYVYSKGENTRCPSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIM 280
            L+    ++      N+    +  MF +   A    MG               G  V+  
Sbjct: 72  RLKWASEKHDKIVDLNSFVDGVGAMFPVARGAQAVTMGA-------------TGRPVNAW 118

Query: 281 HFSIGSAIPGRLYGGNPVDNSE 302
           ++   +  P  +          
Sbjct: 119 YWKANANEPMEIVAEGFSAVRR 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	345
2ivf_C	214	Ethylbenzene dehydrogenase gamma-subunit; anaerobi	99.85
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	96.54
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	96.16
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	95.87
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	95.35
1i82_A	189	Xylanase A, endo-1,4-beta-xylanase A; cellobiose c	94.6
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	90.2
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	88.16
2klu_A	70	T-cell surface glycoprotein CD4; cell membrane, di	83.31
2l34_A	33	TYRO protein tyrosine kinase-binding protein; immu	81.95

>2ivf_C Ethylbenzene dehydrogenase gamma-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}

Probab=99.85  E-value=1.1e-21  Score=179.86  Aligned_cols=119  Identities=21%  Similarity=0.305  Sum_probs=107.8

Q ss_pred             eeecCCcccccccccCcccccccc-----CCCCC-----CCCCCCCeeEEEEeecCccEEEEEEecCceeeecCC-cccC
Q 019150          171 LITLDGHADDWEDIDGSEFSLLPA-----LDPHA-----EHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGE-NTRC  239 (345)
Q Consensus       171 ~ItlDG~~~dwk~V~G~~~~~~~a-----l~~~~-----~~~y~~g~~~vk~~~d~~~~~f~~~v~g~y~~~~~~-~~~c  239 (345)
                      .|++|+++.+|+++++.+++|.|+     +|+++     ..++...+|+|||+|||++|||+|+.+.+|++...+ ...|
T Consensus        11 ~~~~d~~~~~W~~ap~~~v~L~~~~~~~p~~~~~~~~~~~~~~~~~~v~VkAa~dg~~i~f~l~W~D~t~~~~~~~~~f~   90 (214)
T 2ivf_C           11 ELLLDLDAPIWAGAESTTFEMFPTPLVMVKEVSPFLALSEGHGVIKRLDVAALHNGSMIALRLKWASEKHDKIVDLNSFV   90 (214)
T ss_dssp             HHHTCTTCHHHHTSCEEEEECEECCGGGGTTTCTTGGGCCSCCCCCEEEEEEEECSSEEEEEEEEECCCCCSCCSTTCCC
T ss_pred             cccCCCChHHHhcCCceEEEccCCccccccccccccccccCCCCceEEEEEEEECCCeEEEEEEECCCCCCccccccccC
Confidence            468899999999999999999999     88887     788999999999999999999999999999998777 7779


Q ss_pred             CceeeeeeecCCceeeecCCCCCCCCcccccccCCceeeEEEEEeccccCccccCCCCCCCCCCCCCCcccccee
Q 019150          240 PSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVD  314 (345)
Q Consensus       240 ~~~~~m~~~g~~a~~~~mggc~~~~~~c~~~~c~~~~vdi~h~~~~~~~~g~~yg~n~~d~~~g~g~d~~~~~~d  314 (345)
                      ..||+||++|++++|+.||.             .||+|||+||..+.         |.++|..++|   ||++.+
T Consensus        91 D~vAvmfp~~~~~~~~~MG~-------------~~~~vdiw~Wka~~---------~~~~~~~a~G---fgs~~~  140 (214)
T 2ivf_C           91 DGVGAMFPVARGAQAVTMGA-------------TGRPVNAWYWKANA---------NEPMEIVAEG---FSAVRR  140 (214)
T ss_dssp             CEEEEEEESSTTCCGGGTCB-------------TTBCEEEEEEETTC---------SSCEEEEESS---TTSEEE
T ss_pred             ceEEEEeEcCCCCcccccCC-------------CCcEEEEEEEecCC---------CcceeeccCC---cccccc
Confidence            99999999999999999994             67999999999875         4577777766   999887

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=96.54  E-value=0.00065  Score=47.14  Aligned_cols=30  Identities=13%  Similarity=0.166  Sum_probs=20.4

Q ss_pred             CCCCccceEEeehhHHHHH-HHHHHHHHhhh
Q 019150           80 KGKHSNLILLFGIGTGLLI-TAIISVLIICS  109 (345)
Q Consensus        80 kkk~lS~iaIIGIavG~~v-llLL~vlilcL  109 (345)
                      .++.+|..+|+||++|.++ ++++..+++++
T Consensus         4 ~~~~ls~GaIAGiVvG~v~gv~li~~l~~~~   34 (38)
T 2k1k_A            4 VSRGLTGGEIVAVIFGLLLGAALLLGILVFR   34 (38)
T ss_dssp             SSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCceeeeehHHHHHHHHHHHHHHHH
Confidence            3456789999999999987 44444433333

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=96.16  E-value=0.0018  Score=46.29  Aligned_cols=34  Identities=15%  Similarity=-0.008  Sum_probs=19.5

Q ss_pred             cceEEeehhHHHHH-HHHHHHHHhhheeccccCCC
Q 019150           85 NLILLFGIGTGLLI-TAIISVLIICSCAFRRRNSK  118 (345)
Q Consensus        85 S~iaIIGIavG~~v-llLL~vlilcLC~~rRkkkK  118 (345)
                      +..+|++.++|+++ +++++++++++.++||+++|
T Consensus         9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k   43 (44)
T 2ks1_B            9 KIPSIATGMVGALLLLLVVALGIGLFMRRRHIVRK   43 (44)
T ss_dssp             CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred             CcceEEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence            34557666666555 55555555666665555444

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=95.87  E-value=0.0026  Score=45.58  Aligned_cols=35  Identities=14%  Similarity=0.067  Sum_probs=20.2

Q ss_pred             ccceEEeehhHHHHH-HHHHHHHHhhheeccccCCC
Q 019150           84 SNLILLFGIGTGLLI-TAIISVLIICSCAFRRRNSK  118 (345)
Q Consensus        84 lS~iaIIGIavG~~v-llLL~vlilcLC~~rRkkkK  118 (345)
                      .+..+|++.++|+++ ++++.++++++.++||+++|
T Consensus         7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k   42 (44)
T 2l2t_A            7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK   42 (44)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            345667777777665 55555555556555544443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=95.35  E-value=0.0042  Score=44.56  Aligned_cols=32  Identities=16%  Similarity=0.257  Sum_probs=18.2

Q ss_pred             ceEEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150           86 LILLFGIGTGLLITAIISVLIICSCAFRRRNS  117 (345)
Q Consensus        86 ~iaIIGIavG~~vllLL~vlilcLC~~rRkkk  117 (345)
                      ...|+|+++|.++++++.++++++.++||.++
T Consensus        11 ~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~~   42 (44)
T 2jwa_A           11 LTSIISAVVGILLVVVLGVVFGILIKRRQQKI   42 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhheehhhhhc
Confidence            44577888884445555555555555544443

>1i82_A Xylanase A, endo-1,4-beta-xylanase A; cellobiose complex, hydrolase; HET: BGC; 1.90A {Thermotoga maritima} SCOP: b.1.9.2 PDB: 1i8a_A* 1i8u_A

Probab=94.60  E-value=0.05  Score=46.54  Aligned_cols=89  Identities=19%  Similarity=0.268  Sum_probs=54.1

Q ss_pred             eeeecceeecCCcccc-cccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEecCceeeecC-CcccCCce
Q 019150          165 AEFKPGLITLDGHADD-WEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKG-ENTRCPSI  242 (345)
Q Consensus       165 aef~PG~ItlDG~~~d-wk~V~G~~~~~~~al~~~~~~~y~~g~~~vk~~~d~~~~~f~~~v~g~y~~~~~-~~~~c~~~  242 (345)
                      |....+.|++||..++ |++.+-......-     .+...+.=+-+||++||++.+|++++|--+.-.... .--.--+|
T Consensus         3 a~~~~~~~~IDG~ld~~W~~a~~~~~~~~~-----~g~~~~~~~t~~~~~~d~~~LYv~~~v~D~~~~~~~~~~~~~D~v   77 (189)
T 1i82_A            3 ATAKYGTPVIDGEIDEIWNTTEEIETKAVA-----MGSLDKNATAKVRVLWDENYLYVLAIVKDPVLNKDNSNPWEQDSV   77 (189)
T ss_dssp             EEEEECCCCSSSSCCGGGGGSCEEECCEEE-----ESCTTTSCEEEEEEEECSSEEEEEEEEECSSCCCCSSSGGGSSEE
T ss_pred             eeeccCCceECCccchhhccCccEeeeeee-----cCCcCCCCcEEEEEEEcCCceEEEEEEECCCcccCCCCCccCCeE
Confidence            4556778899999777 9988763321111     122223447899999999999999999776543211 11112335


Q ss_pred             eeeeee-cCCceeeecC
Q 019150          243 ALMFQI-GEDATYHNMG  258 (345)
Q Consensus       243 ~~m~~~-g~~a~~~~mg  258 (345)
                      -+.+.- ++..+||+.+
T Consensus        78 eifid~~~~~~~~y~~~   94 (189)
T 1i82_A           78 EIFIDENNHKTGYYEDD   94 (189)
T ss_dssp             EEEEETTCCCCSSCCTT
T ss_pred             EEEECCCCCCCcccccc
Confidence            555443 3444577654

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=90.20  E-value=0.088  Score=35.86  Aligned_cols=13  Identities=8%  Similarity=-0.005  Sum_probs=5.0

Q ss_pred             eEEeehhHHHHHH
Q 019150           87 ILLFGIGTGLLIT   99 (345)
Q Consensus        87 iaIIGIavG~~vl   99 (345)
                      .+|++.+++++++
T Consensus        13 ~~I~~~vv~Gv~l   25 (41)
T 2k9y_A           13 LAVIGGVAVGVVL   25 (41)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             EEEEeehhHHHHH
Confidence            3343333333333

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=88.16  E-value=0.093  Score=55.87  Aligned_cols=25  Identities=20%  Similarity=0.142  Sum_probs=0.0

Q ss_pred             CCCccceEEeehhHHHHHHHHHHHH
Q 019150           81 GKHSNLILLFGIGTGLLITAIISVL  105 (345)
Q Consensus        81 kk~lS~iaIIGIavG~~vllLL~vl  105 (345)
                      .-.+++.+|+||.+|.++|++++++
T Consensus       699 ~~~l~~~aii~il~~~~~ll~~~ll  723 (880)
T 1q55_A          699 VGGFDLPIILVILGSVLALLILFLL  723 (880)
T ss_dssp             -------------------------
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888887777665544443

>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}

Probab=83.31  E-value=0.94  Score=35.25  Aligned_cols=27  Identities=26%  Similarity=0.218  Sum_probs=12.7

Q ss_pred             hhHHHHH--HHHHHHHHhhheeccccCCC
Q 019150           92 IGTGLLI--TAIISVLIICSCAFRRRNSK  118 (345)
Q Consensus        92 IavG~~v--llLL~vlilcLC~~rRkkkK  118 (345)
                      |++|+++  +++.++.++|..++|+++++
T Consensus        12 ivlGg~~~lll~~glcI~ccvkcrhRrrq   40 (70)
T 2klu_A           12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQ   40 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred             HHHhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            3445444  55555555544444444433

>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B

Probab=81.95  E-value=0.39  Score=32.32  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=16.2

Q ss_pred             CccceEEeehhHHHHHHHHHHH
Q 019150           83 HSNLILLFGIGTGLLITAIISV  104 (345)
Q Consensus        83 ~lS~iaIIGIavG~~vllLL~v  104 (345)
                      .++..+|+||++|.++..+++.
T Consensus         3 ~L~~gaIaGIVvgdi~~t~~i~   24 (33)
T 2l34_A            3 TVSPGVLAGIVVGDLVLTVLIA   24 (33)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcceEEeEeHHHHHHHHHHH
Confidence            4678899999999887444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	345
d1i8aa_	189	Xylanase 10A {Thermotoga maritima [TaxId: 2336]}	94.67

>d1i8aa_ b.1.9.2 (A:) Xylanase 10A {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CBD9-like
family: Family 9 carbohydrate-binding module, CBD9
domain: Xylanase 10A
species: Thermotoga maritima [TaxId: 2336]

Probab=94.67  E-value=0.021  Score=46.61  Aligned_cols=79  Identities=19%  Similarity=0.278  Sum_probs=51.4

Q ss_pred             eeeecceeecCCcccc-cccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEecCceeeecC-CcccCCce
Q 019150          165 AEFKPGLITLDGHADD-WEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKG-ENTRCPSI  242 (345)
Q Consensus       165 aef~PG~ItlDG~~~d-wk~V~G~~~~~~~al~~~~~~~y~~g~~~vk~~~d~~~~~f~~~v~g~y~~~~~-~~~~c~~~  242 (345)
                      |..+-|.+++||..++ |+..+-..  ++-..++.....   -+-+||+++|.+.+||+++|--+...... .--..-+|
T Consensus         3 a~~~~g~p~IDG~lde~W~~a~~~~--~~~~~~~~~~~~---~~t~v~~~~D~~~LYv~~~~~D~~~~~~~~~~~~~D~v   77 (189)
T d1i8aa_           3 ATAKYGTPVIDGEIDEIWNTTEEIE--TKAVAMGSLDKN---ATAKVRVLWDENYLYVLAIVKDPVLNKDNSNPWEQDSV   77 (189)
T ss_dssp             EEEEECCCCSSSSCCGGGGGSCEEE--CCEEEESCTTTS---CEEEEEEEECSSEEEEEEEEECSSCCCCSSSGGGSSEE
T ss_pred             eecccCCCEECccCChHHhcCcccc--cceeccCCCCCC---CcEEEEEEEecCeEEEEEEEEcCCcccccCCccCCCeE
Confidence            4456699999999888 99876443  333333333322   36799999999999999999765432211 11123567


Q ss_pred             eeeeee
Q 019150          243 ALMFQI  248 (345)
Q Consensus       243 ~~m~~~  248 (345)
                      .++|.-
T Consensus        78 ei~id~   83 (189)
T d1i8aa_          78 EIFIDE   83 (189)
T ss_dssp             EEEEES
T ss_pred             EEEEcC
Confidence            777754