Citrus Sinensis ID: 019160

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
MTVDSNPPLVHHFEKLLRHPDEISTPKRHDCHQQNGIMMEECQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLNNSYRWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYDSSIGSCTEPSTYRKFTFEEYRKQVQEDVKQTGHKVGLPRFLQVKNAQL
ccccccccccccHHHHHccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccEEEccccccccccccccccccccccccEEEEccccccEEEEEccEEEEcccccccEEEEccccHHHHHccccccccccEEEcccccEEEEEEEEccccccEEEccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHcccc
cccccccccHHcHHHHHccccccccccccccccccccccccccccEEEHcccccccHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEEcccccHHHHEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEcccccccccccEEEEcccccEEEEEEcccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEccccccEcccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHcccc
mtvdsnpplvhHFEKLlrhpdeistpkrhdchqqngimmeecqlplidliglnshDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLfktpferkatcgllnnsyrwgtptatcpkqfswseafhipltkisdqscygefTSLRLVMTEFAAAMSKLARLLARILAENLsqqggmlddicnestcflrlnrypvcpisaemfglvphtdsdfLTILYQDQVgglqlmkdskwvavrpnpdalIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLcpsydssigsctepstyrkftFEEYRKQVQEDVKqtghkvglprflqvknaql
mtvdsnpplvHHFEKLlrhpdeistpkrHDCHQQNGIMMEECQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLNNSYRWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYDSSIGSCTEPSTYRKFTFEEYRKQVQEDVkqtghkvglprflqvknaql
MTVDSNPPLVHHFEKLLRHPDEISTPKRHDCHQQNGIMMEECQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLNNSYRWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYDSSIGSCTEPSTYRKFTFEEYRKQVQEDVKQTGHKVGLPRFLQVKNAQL
**********************************NGIMMEECQLPLIDLIGLN************AMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLNNSYRWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYDSSIGSCTEPSTYRKFTFEEYRKQ*************************
*****NP***HHFE***************************CQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKA*********RWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYDSSIGSCTEPSTYRKFTFEEYRKQVQEDVKQTGHKVGLPRFLQVK****
MTVDSNPPLVHHFEKLLRHPDEISTPKRHDCHQQNGIMMEECQLPLIDLIGLNSHD************RASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLNNSYRWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYDSSIGSCTEPSTYRKFTFEEYRKQVQEDVKQTGHKVGLPRFLQVKNAQL
*****NPPLVHHFEKLLRHPDEISTPKRHDCHQQNGIMMEECQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLNNSYRWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYDSSIGSCTEPSTYRKFTFEEYRKQVQEDVKQTGHKVGLPRFLQVKN***
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MTVDSNPPLVHHFEKLLRHPDEISTPKRHDCHQQNGIMMEECQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLNNSYRWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYDSSIGSCTEPSTYRKFTFEEYRKQVQEDVKQTGHKVGLPRFLQVKNAQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query345 2.2.26 [Sep-21-2011]
O49561338 Gibberellin 2-beta-dioxyg yes no 0.863 0.881 0.572 1e-103
Q9C6I4336 Gibberellin 2-beta-dioxyg no no 0.956 0.982 0.418 1e-73
O04706365 Gibberellin 20 oxidase 1- N/A no 0.797 0.753 0.319 1e-36
Q39112380 Gibberellin 20 oxidase 3 no no 0.776 0.705 0.313 1e-36
O04705361 Gibberellin 20 oxidase 1- N/A no 0.797 0.761 0.313 3e-35
Q9C899361 Feruloyl CoA ortho-hydrox no no 0.773 0.739 0.341 4e-35
O04707365 Gibberellin 20 oxidase 1- N/A no 0.797 0.753 0.310 7e-35
D4N502360 Codeine O-demethylase OS= N/A no 0.869 0.833 0.296 2e-34
Q0WPW4307 1-aminocyclopropane-1-car no no 0.826 0.928 0.327 3e-34
Q06588323 1-aminocyclopropane-1-car no no 0.776 0.829 0.343 4e-34
>sp|O49561|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2 Back     alignment and function desciption
 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 173/302 (57%), Positives = 226/302 (74%), Gaps = 4/302 (1%)

Query: 38  MMEECQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQE 97
           ++EE +LP+ID+  L    E ER    +A+ RAS EWGFFQV+NHGIS ++L KMR+EQ 
Sbjct: 36  VVEEVELPVIDVSRLIDGAEEEREKCKEAIARASREWGFFQVINHGISMDVLEKMRQEQI 95

Query: 98  LLFKTPFERKATCGLLN-NSYRWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLR 156
            +F+ PF++K+     +  SYRWGTP+AT  +Q SWSEAFH+P+T ISD     +FT+L 
Sbjct: 96  RVFREPFDKKSKSEKFSAGSYRWGTPSATSIRQLSWSEAFHVPMTDISDNK---DFTTLS 152

Query: 157 LVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGL 216
             M +FA+    LA +LA +LAE   Q      + C  +TC+LR+NRYP CP  +E++GL
Sbjct: 153 STMEKFASESEALAYMLAEVLAEKSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGL 212

Query: 217 VPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHK 276
           +PHTDSDFLTILYQDQVGGLQL+KD++W+AV+PNP ALI+NIGDLFQAWSN +YKSVEH+
Sbjct: 213 MPHTDSDFLTILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHR 272

Query: 277 VMANGKMERYSVAYFLCPSYDSSIGSCTEPSTYRKFTFEEYRKQVQEDVKQTGHKVGLPR 336
           VM N K+ER+S AYF+CPSYD+ I   ++   YR F+F E+R+QVQEDVK+ G KVGLPR
Sbjct: 273 VMTNPKVERFSTAYFMCPSYDAVIECSSDRPAYRNFSFREFRQQVQEDVKKFGFKVGLPR 332

Query: 337 FL 338
           FL
Sbjct: 333 FL 334
Catalyzes the 2-beta-hydroxylation of gibberellins (GA) precursors, rendering them unable to be converted to active GAs. Hydroxylates the C20-GA GA12 and GA53, but is not active on C19-GAs, like GA1, GA4, GA9 and GA20.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 3
>sp|Q9C6I4|G2OX7_ARATH Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|Q39112|GAOX3_ARATH Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1 Back     alignment and function description
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|Q9C899|F6H2_ARATH Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|Q0WPW4|ACCO5_ARATH 1-aminocyclopropane-1-carboxylate oxidase 5 OS=Arabidopsis thaliana GN=At1g77330 PE=2 SV=1 Back     alignment and function description
>sp|Q06588|ACCO4_ARATH 1-aminocyclopropane-1-carboxylate oxidase 4 OS=Arabidopsis thaliana GN=ACO4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
255555559332 gibberellin 20-oxidase, putative [Ricinu 0.947 0.984 0.764 1e-148
297738275390 unnamed protein product [Vitis vinifera] 0.968 0.856 0.735 1e-145
359473517340 PREDICTED: gibberellin 2-beta-dioxygenas 0.968 0.982 0.735 1e-145
147779231340 hypothetical protein VITISV_025459 [Viti 0.968 0.982 0.732 1e-143
356541014338 PREDICTED: gibberellin 2-beta-dioxygenas 0.971 0.991 0.685 1e-133
356544418405 PREDICTED: gibberellin 2-beta-dioxygenas 0.973 0.829 0.669 1e-131
449528670344 PREDICTED: gibberellin 2-beta-dioxygenas 0.971 0.973 0.640 1e-125
449449140340 PREDICTED: gibberellin 2-beta-dioxygenas 0.950 0.964 0.642 1e-122
326520938347 predicted protein [Hordeum vulgare subsp 0.959 0.953 0.627 1e-112
357150304356 PREDICTED: gibberellin 2-beta-dioxygenas 0.968 0.938 0.613 1e-111
>gi|255555559|ref|XP_002518816.1| gibberellin 20-oxidase, putative [Ricinus communis] gi|223542197|gb|EEF43741.1| gibberellin 20-oxidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 259/339 (76%), Positives = 286/339 (84%), Gaps = 12/339 (3%)

Query: 3   VDSNPPLVHHFEKL---LRHPDEISTPKRHDCHQQNGIMMEECQLPLIDLIGLNSHDERE 59
           V+SNPPL   +  L   +  P E  TP       Q+G  MEECQLPL+DL  L S  E+E
Sbjct: 2   VESNPPLQLSYTALTHQIPEPLERHTP-------QSG--MEECQLPLVDLNCLKSGAEKE 52

Query: 60  RAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLNNSYRW 119
           R+A + A+  ASSEWGFFQVVNHGISPELL+ MR+EQ  LF+TPF RKATCGLLNNSYRW
Sbjct: 53  RSACSSAISTASSEWGFFQVVNHGISPELLKNMRREQVKLFQTPFHRKATCGLLNNSYRW 112

Query: 120 GTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAE 179
           GTPTATCP QFSWSEAFHIPLTKIS+Q+CYGEFTSLR VM EFAAAMSKLA+LLA ILAE
Sbjct: 113 GTPTATCPNQFSWSEAFHIPLTKISEQACYGEFTSLREVMMEFAAAMSKLAKLLAGILAE 172

Query: 180 NLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQLM 239
           NL     + ++IC+ES CFLRLNRYP CPIS EMFGLVPHTDSDFLTILYQD+VGGLQLM
Sbjct: 173 NLGHPRAVFEEICHESNCFLRLNRYPSCPISPEMFGLVPHTDSDFLTILYQDEVGGLQLM 232

Query: 240 KDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYDSS 299
           KDSKWVAV+PNP+ALIVNIGDLFQAWSND+YKSVEHKVMANGKMERYSVAYFLCPSYDS 
Sbjct: 233 KDSKWVAVKPNPEALIVNIGDLFQAWSNDIYKSVEHKVMANGKMERYSVAYFLCPSYDSL 292

Query: 300 IGSCTEPSTYRKFTFEEYRKQVQEDVKQTGHKVGLPRFL 338
           IGSC EPS YR+FTF EYR+QV+EDVK TGHK+GLPRFL
Sbjct: 293 IGSCKEPSIYREFTFGEYREQVREDVKTTGHKIGLPRFL 331

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738275|emb|CBI27476.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473517|ref|XP_003631313.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147779231|emb|CAN72288.1| hypothetical protein VITISV_025459 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541014|ref|XP_003538979.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|356544418|ref|XP_003540648.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Glycine max] Back     alignment and taxonomy information
>gi|449528670|ref|XP_004171326.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449449140|ref|XP_004142323.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|326520938|dbj|BAJ92832.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326522801|dbj|BAJ88446.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|357150304|ref|XP_003575413.1| PREDICTED: gibberellin 2-beta-dioxygenase 8-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
TAIR|locus:2127403338 GA2OX8 "gibberellin 2-oxidase 0.863 0.881 0.572 2.1e-93
TAIR|locus:2036386336 GA2OX7 "gibberellin 2-oxidase 0.956 0.982 0.418 3.1e-67
TAIR|locus:2178783352 AT5G58660 [Arabidopsis thalian 0.588 0.576 0.392 2.2e-42
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.794 0.738 0.358 2.6e-38
TAIR|locus:2075656331 AT3G47190 [Arabidopsis thalian 0.875 0.912 0.335 1.5e-37
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.785 0.778 0.337 8.3e-35
TAIR|locus:2035671361 AT1G55290 [Arabidopsis thalian 0.779 0.745 0.348 1.7e-34
TAIR|locus:2182875380 GA20OX3 "gibberellin 20-oxidas 0.759 0.689 0.324 3.6e-34
TAIR|locus:2082058363 JRG21 "jasmonate-regulated gen 0.805 0.765 0.341 4.6e-34
TAIR|locus:2031422307 AT1G77330 [Arabidopsis thalian 0.823 0.925 0.341 4.6e-34
TAIR|locus:2127403 GA2OX8 "gibberellin 2-oxidase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 173/302 (57%), Positives = 226/302 (74%)

Query:    38 MMEECQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQE 97
             ++EE +LP+ID+  L    E ER    +A+ RAS EWGFFQV+NHGIS ++L KMR+EQ 
Sbjct:    36 VVEEVELPVIDVSRLIDGAEEEREKCKEAIARASREWGFFQVINHGISMDVLEKMRQEQI 95

Query:    98 LLFKTPFERKATCGLLN-NSYRWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLR 156
              +F+ PF++K+     +  SYRWGTP+AT  +Q SWSEAFH+P+T ISD     +FT+L 
Sbjct:    96 RVFREPFDKKSKSEKFSAGSYRWGTPSATSIRQLSWSEAFHVPMTDISDNK---DFTTLS 152

Query:   157 LVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGL 216
               M +FA+    LA +LA +LAE   Q      + C  +TC+LR+NRYP CP  +E++GL
Sbjct:   153 STMEKFASESEALAYMLAEVLAEKSGQNSSFFKENCVRNTCYLRMNRYPPCPKPSEVYGL 212

Query:   217 VPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHK 276
             +PHTDSDFLTILYQDQVGGLQL+KD++W+AV+PNP ALI+NIGDLFQAWSN +YKSVEH+
Sbjct:   213 MPHTDSDFLTILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHR 272

Query:   277 VMANGKMERYSVAYFLCPSYDSSIGSCTEPSTYRKFTFEEYRKQVQEDVKQTGHKVGLPR 336
             VM N K+ER+S AYF+CPSYD+ I   ++   YR F+F E+R+QVQEDVK+ G KVGLPR
Sbjct:   273 VMTNPKVERFSTAYFMCPSYDAVIECSSDRPAYRNFSFREFRQQVQEDVKKFGFKVGLPR 332

Query:   337 FL 338
             FL
Sbjct:   333 FL 334
GO:0005737 "cytoplasm" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009685 "gibberellin metabolic process" evidence=IDA
GO:0052634 "C-19 gibberellin 2-beta-dioxygenase activity" evidence=IDA
GO:0052635 "C-20 gibberellin 2-beta-dioxygenase activity" evidence=IDA
TAIR|locus:2036386 GA2OX7 "gibberellin 2-oxidase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178783 AT5G58660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075656 AT3G47190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035671 AT1G55290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182875 GA20OX3 "gibberellin 20-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082058 JRG21 "jasmonate-regulated gene 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031422 AT1G77330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O49561G2OX8_ARATH1, ., 1, 4, ., 1, 1, ., 1, 30.57280.86370.8816yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.963
3rd Layer1.14.11.130.946
4th Layer1.14.11.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021262001
SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (340 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00008183001
SubName- Full=Chromosome undetermined scaffold_1274, whole genome shotgun sequence; (163 aa)
  •     0.432

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-76
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 9e-59
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-53
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 6e-50
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-47
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-46
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 1e-45
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-45
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 2e-45
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 4e-44
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 5e-43
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-40
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 6e-40
PLN02947374 PLN02947, PLN02947, oxidoreductase 2e-37
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 6e-36
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 3e-35
PLN02704335 PLN02704, PLN02704, flavonol synthase 6e-35
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-32
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 6e-31
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 8e-29
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-27
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 4e-27
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 5e-25
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-22
PLN02997325 PLN02997, PLN02997, flavonol synthase 1e-21
PLN02485329 PLN02485, PLN02485, oxidoreductase 2e-19
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 9e-19
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 4e-06
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  238 bits (608), Expect = 2e-76
 Identities = 129/355 (36%), Positives = 187/355 (52%), Gaps = 39/355 (10%)

Query: 3   VDSNPPLVHHFEKLLRHPDEISTPKRHDCHQQNGIMMEECQLPLIDLIGLNSHDERERAA 62
            +S PP    F  L+    EI  P   +         ++  +P+ID+  L+    RE   
Sbjct: 4   SESYPPE---FRPLM---SEIHGPAEGEEGTPVLDRSKDIDIPVIDMECLDMEKLRE--- 54

Query: 63  SAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLNN--SYRWG 120
                  A  +WG F++ NHGI   L+ ++++  E L   PFE K     +N+  SY WG
Sbjct: 55  -------ACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWG 107

Query: 121 TPTAT--------CPKQFS--WSEAFHIPLTKIS---DQSCYGE-FTSLRLVMTEFAAAM 166
           TP  T         P++ +  W E F+IPL+ +S     SC      S R++M E+   +
Sbjct: 108 TPALTPSGKALSRGPQESNVNWVEGFNIPLSSLSLLQTLSCSDPKLESFRVLMEEYGKHL 167

Query: 167 SKLARLLARILAENLSQQ--GGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDF 224
           +++A  L   +A+ LS +  G       +EST  +R+ RYP C   AE  G+  HTDS  
Sbjct: 168 TRIAVTLFEAIAKTLSLELSGDQKMSYLSESTGVIRVYRYPQCSNEAEAPGMEVHTDSSV 227

Query: 225 LTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMA-NGKM 283
           ++IL QD+VGGL++MKD +W  V+P  + L+VN+GD+ Q  S+D YKSV H+V   N K 
Sbjct: 228 ISILNQDEVGGLEVMKDGEWFNVKPIANTLVVNLGDMMQVISDDEYKSVLHRVGKRNKKK 287

Query: 284 ERYSVAYFLCPSYDSSIGSCTEPSTYRKFTFEEYRKQVQEDVKQTGHKVGLPRFL 338
           ERYS+ YF+ P  D  I S    S Y+ FT+ ++  QVQ DVK  G KVGL RF 
Sbjct: 288 ERYSICYFVFPEEDCVIKS----SKYKPFTYSDFEAQVQLDVKTLGSKVGLSRFK 338

Length = 341
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 345
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02947374 oxidoreductase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02485329 oxidoreductase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.86
PLN03176120 flavanone-3-hydroxylase; Provisional 99.8
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.43
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.95
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 95.29
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 93.51
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=1.7e-71  Score=533.82  Aligned_cols=294  Identities=29%  Similarity=0.542  Sum_probs=250.0

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHHHHHHHhhhcceEEEEcCCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCCCC-cccC
Q 019160           42 CQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLNNS-YRWG  120 (345)
Q Consensus        42 ~~iPvIDl~~l~~~d~~~r~~~~~~l~~A~~~~GfF~l~nhGi~~e~~~~~~~~~~~fF~lP~e~K~~~~~~~~~-~~~g  120 (345)
                      .+||+|||+.+.+++.  +.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++....+. .||+
T Consensus        51 ~~iPvIDls~~~~~~~--~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~  128 (357)
T PLN02216         51 SEIPIIDMKRLCSSTA--MDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFG  128 (357)
T ss_pred             CCCCeEEChhccCCcc--HHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCccccC
Confidence            4799999999876553  335788999999999999999999999999999999999999999999998544333 3555


Q ss_pred             CCCC-CCCCCCCcccccCCCCC--CCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccc-c
Q 019160          121 TPTA-TCPKQFSWSEAFHIPLT--KISDQSCYGE-FTSLRLVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICNE-S  195 (345)
Q Consensus       121 ~~~~-~~~~~~d~~E~~~~~~~--~~~~~~~wp~-~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~-~  195 (345)
                      .... ...+..||+|.|.+...  .....+.||. +++||+.+++|+++|.+|+.+||++||++||+++++|.+.+.. .
T Consensus       129 ~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~  208 (357)
T PLN02216        129 QAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDL  208 (357)
T ss_pred             ccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCc
Confidence            4432 22345799999876321  1223456985 7899999999999999999999999999999999999887765 4


Q ss_pred             ccceeeeecCCCCCCcccCCCCCcccCCcEEEEee-CCCCceEEEeCCeEEEecCCCCcEEEEccccchhhcCCcccCcc
Q 019160          196 TCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQ-DQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVE  274 (345)
Q Consensus       196 ~~~lrl~~Yp~~~~~~~~~~~~~HtD~g~lTlL~q-d~~~GLqV~~~g~W~~V~p~~g~liVnvGd~L~~~TnG~~~S~~  274 (345)
                      .+.||++|||+|+.++..+|+++|||+|+||||+| ++++||||+++|+|++|+|.||++|||+||+||+||||+|+|++
T Consensus       209 ~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~  288 (357)
T PLN02216        209 GQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIE  288 (357)
T ss_pred             hheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccC
Confidence            56899999999998888899999999999999999 57999999999999999999999999999999999999999999


Q ss_pred             ceeecCCCCceEEEEEeeCCCCCCeeeCC------CCCCCCCcccHHHHHHHHHHHHHhhCCccCCCceee
Q 019160          275 HKVMANGKMERYSVAYFLCPSYDSSIGSC------TEPSTYRKFTFEEYRKQVQEDVKQTGHKVGLPRFLQ  339 (345)
Q Consensus       275 HRVv~~~~~~R~Si~~F~~P~~d~~i~p~------~~p~~y~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~  339 (345)
                      |||+.++.++||||+||+.|+.|++|.|.      ++|++|++++++||++.+...  ....+..++.|+|
T Consensus       289 HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~~--~~~~~~~~~~~~~  357 (357)
T PLN02216        289 HRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSR--ELDGKAYLDAMRI  357 (357)
T ss_pred             ceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCHHHHHHHHHhc--ccCCcchhhhhcC
Confidence            99998888899999999999999999983      478999999999999876642  2223444555543

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-31
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-26
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-26
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-25
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 1e-10
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 7e-09
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 2e-08
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 3e-08
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 140/287 (48%), Gaps = 21/287 (7%)
Query: 49  LIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKA 108
           +I L+  +  ERAA+ + +  A   WGFF++VNHGI  E+   + K  +  +K   E++ 
Sbjct: 6   IISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRF 65
Query: 109 TCGLLNNSYRWGTPTATCPKQFSWSEAF---HIPLTKISDQSCYGEFTSLRLVMTEFAAA 165
              + + +        T      W   F   H+P++ IS+     E    R V  +FA  
Sbjct: 66  KELVASKALEGVQAEVT---DXDWESTFFLKHLPISNISEVPDLDE--EYREVXRDFAKR 120
Query: 166 MSKLARLLARILAENLSQQGGMLDDICNES---TCFLRLNRYPVCPISAEMFGLVPHTDS 222
           + KLA  L  +L ENL  + G L +    S       +++ YP CP    + GL  HTD+
Sbjct: 121 LEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDA 180
Query: 223 DFLTILYQD-QVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANG 281
             + +L+QD +V GLQL+KD +W+ V P   +++VN+GD  +  +N  YKSV H+V+A  
Sbjct: 181 GGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQK 240
Query: 282 KMERYSVAYFLCPSYDSSIGSC---------TEPSTYRKFTFEEYRK 319
              R S+A F  P  D+ I                 Y KF F++Y K
Sbjct: 241 DGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXK 287
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 2e-93
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 4e-91
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 5e-85
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 8e-75
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 8e-72
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 3e-68
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  280 bits (718), Expect = 2e-93
 Identities = 94/316 (29%), Positives = 148/316 (46%), Gaps = 24/316 (7%)

Query: 43  QLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKT 102
             P+I L  +N  +   RAA+ + +  A   WGFF++VNHGI  E++  + K  +  +K 
Sbjct: 3   NFPIISLDKVNGVE---RAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKK 59

Query: 103 PFERKATCGLLNNSYRWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEF-TSLRLVMTE 161
             E++    + + +   G           W   F +    IS+ S   +     R VM +
Sbjct: 60  CMEQRFKELVASKA-LEGVQAEV--TDMDWESTFFLKHLPISNISEVPDLDEEYREVMRD 116

Query: 162 FAAAMSKLARLLARILAENLSQQGGMLDDICNES---TCFLRLNRYPVCPISAEMFGLVP 218
           FA  + KLA  L  +L ENL  + G L +    S       +++ YP CP    + GL  
Sbjct: 117 FAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRA 176

Query: 219 HTDSDFLTILYQD-QVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKV 277
           HTD+  + +L+QD +V GLQL+KD +W+ V P   +++VN+GD  +  +N  YKSV H+V
Sbjct: 177 HTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRV 236

Query: 278 MANGKMERYSVAYFLCPSYDSSIG---------SCTEPSTYRKFTFEEYRKQVQEDVKQT 328
           +A     R S+A F  P  D+ I          +      Y KF F++Y K         
Sbjct: 237 IAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAG----L 292

Query: 329 GHKVGLPRFLQVKNAQ 344
             +   PRF  +K  +
Sbjct: 293 KFQAKEPRFEAMKAME 308
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.15
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.38
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 90.62
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 89.41
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 87.59
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 81.29
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-71  Score=533.64  Aligned_cols=283  Identities=28%  Similarity=0.449  Sum_probs=252.1

Q ss_pred             CCCceEecCCCCCCCHHHHHHHHHHHHHHhhhcceEEEEcCCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCC---CCcc
Q 019160           42 CQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLN---NSYR  118 (345)
Q Consensus        42 ~~iPvIDl~~l~~~d~~~r~~~~~~l~~A~~~~GfF~l~nhGi~~e~~~~~~~~~~~fF~lP~e~K~~~~~~~---~~~~  118 (345)
                      .+||||||+.|.++++++|.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++....   +..|
T Consensus        45 ~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~G  124 (356)
T 1gp6_A           45 PQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG  124 (356)
T ss_dssp             CCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSE
T ss_pred             CCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccc
Confidence            4699999999988888888999999999999999999999999999999999999999999999999985432   3446


Q ss_pred             cCCCCC-CCCCCCCcccccCCCCCC--CCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccc-
Q 019160          119 WGTPTA-TCPKQFSWSEAFHIPLTK--ISDQSCYGE-FTSLRLVMTEFAAAMSKLARLLARILAENLSQQGGMLDDICN-  193 (345)
Q Consensus       119 ~g~~~~-~~~~~~d~~E~~~~~~~~--~~~~~~wp~-~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~-  193 (345)
                      |+.... ...+..||+|.|.+....  ....+.||. +++||+.+++|+++|.+|+.+||++|+++||+++++|.+.+. 
T Consensus       125 y~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~  204 (356)
T 1gp6_A          125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGG  204 (356)
T ss_dssp             EECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTH
T ss_pred             cCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence            655433 223468999999874311  123456985 899999999999999999999999999999999999998876 


Q ss_pred             --ccccceeeeecCCCCCCcccCCCCCcccCCcEEEEeeCCCCceEEEeCCeEEEecCCCCcEEEEccccchhhcCCccc
Q 019160          194 --ESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYK  271 (345)
Q Consensus       194 --~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~g~lTlL~qd~~~GLqV~~~g~W~~V~p~~g~liVnvGd~L~~~TnG~~~  271 (345)
                        .+.+.||++|||+|+.++..+|+++|||+|+||||+||+++||||+++|+|++|+|.||++|||+||+||+||||+|+
T Consensus       205 ~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~k  284 (356)
T 1gp6_A          205 LEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK  284 (356)
T ss_dssp             HHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSC
T ss_pred             cCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEee
Confidence              477889999999999888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceeecCCCCceEEEEEeeCCCCCC-eeeCC------CCCCCCCcccHHHHHHHHHHH
Q 019160          272 SVEHKVMANGKMERYSVAYFLCPSYDS-SIGSC------TEPSTYRKFTFEEYRKQVQED  324 (345)
Q Consensus       272 S~~HRVv~~~~~~R~Si~~F~~P~~d~-~i~p~------~~p~~y~~~~~~ey~~~~~~~  324 (345)
                      |++|||+.+++.+|||++||++|+.|+ +|.|.      .+|++|+++|++||++.+...
T Consensus       285 S~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~  344 (356)
T 1gp6_A          285 SILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFG  344 (356)
T ss_dssp             CCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHH
T ss_pred             ccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhcCCCCCccCCCccHHHHHHHHHHh
Confidence            999999998889999999999999999 99983      378999999999999876543
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 345
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-55
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-52
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 7e-46
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 3e-40
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  181 bits (460), Expect = 4e-55
 Identities = 76/295 (25%), Positives = 128/295 (43%), Gaps = 17/295 (5%)

Query: 43  QLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKT 102
           Q+P IDL  + S DE+ R    + + +AS +WG   ++NHGI  +L+ +++K  E  F  
Sbjct: 45  QVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSL 104

Query: 103 PFERK---ATCGLLNNSYRWGTPTATCPKQFSWSEAFHIPLTKISDQSCYGEFTSL---- 155
             E K   A          +G+  A         E +   L    ++     +       
Sbjct: 105 SVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY 164

Query: 156 RLVMTEFAAAMSKLARLLARILAENLSQQGGMLD---DICNESTCFLRLNRYPVCPISAE 212
               +E+A  +  LA  + + L+  L  +   L+       E    +++N YP CP    
Sbjct: 165 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPEL 224

Query: 213 MFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKS 272
             G+  HTD   LT +  + V GLQL  + KWV  +  PD+++++IGD  +  SN  YKS
Sbjct: 225 ALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKS 284

Query: 273 VEHKVMANGKMERYSVAYFLCPSYDSSIGSC-------TEPSTYRKFTFEEYRKQ 320
           + H+ + N +  R S A F  P  D  +            P+ +   TF ++ + 
Sbjct: 285 ILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEH 339
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 88.8
d2csga1417 Hypothetical protein YbiU {Salmonella typhimurium 88.01
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.8e-68  Score=507.47  Aligned_cols=285  Identities=27%  Similarity=0.463  Sum_probs=244.5

Q ss_pred             CCCCCCCceEecCCCCCCCHHHHHHHHHHHHHHhhhcceEEEEcCCCCHHHHHHHHHHHHHhhCCCHHHHhhcCCCC--C
Q 019160           38 MMEECQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLN--N  115 (345)
Q Consensus        38 ~~~~~~iPvIDl~~l~~~d~~~r~~~~~~l~~A~~~~GfF~l~nhGi~~e~~~~~~~~~~~fF~lP~e~K~~~~~~~--~  115 (345)
                      .....+||||||+.|.+++++.|.+++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++....  +
T Consensus        40 ~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~  119 (349)
T d1gp6a_          40 KEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATG  119 (349)
T ss_dssp             CCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGT
T ss_pred             cCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccC
Confidence            33456899999999999999999999999999999999999999999999999999999999999999999984322  2


Q ss_pred             Ccc-cCCCCC-CCCCCCCcccccCC-CC-CCCCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccc
Q 019160          116 SYR-WGTPTA-TCPKQFSWSEAFHI-PL-TKISDQSCYGE-FTSLRLVMTEFAAAMSKLARLLARILAENLSQQGGMLDD  190 (345)
Q Consensus       116 ~~~-~g~~~~-~~~~~~d~~E~~~~-~~-~~~~~~~~wp~-~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~  190 (345)
                      +++ |+.... ......+|.+.+.. .. ......+.||. .+.|++.+++|+++|.+++.+|+++++++||+++++|.+
T Consensus       120 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~  199 (349)
T d1gp6a_         120 KIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEK  199 (349)
T ss_dssp             BCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHH
T ss_pred             CccccccccccccccccchhhhhcccccccccccccccccccchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHH
Confidence            222 332222 22334566554322 11 11223355875 799999999999999999999999999999999999887


Q ss_pred             cc---cccccceeeeecCCCCCCcccCCCCCcccCCcEEEEeeCCCCceEEEeCCeEEEecCCCCcEEEEccccchhhcC
Q 019160          191 IC---NESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSN  267 (345)
Q Consensus       191 ~~---~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~g~lTlL~qd~~~GLqV~~~g~W~~V~p~~g~liVnvGd~L~~~Tn  267 (345)
                      .+   ....+.||++|||+++.....+|+++|||+|+||||+|+.++||||+++|+|++|+|.+|++|||+||+||+|||
T Consensus       200 ~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~~~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~Tn  279 (349)
T d1gp6a_         200 EVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSN  279 (349)
T ss_dssp             HTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTT
T ss_pred             HhccccccceeeeecccccccchhhccccccCCCCcceEEEeccCCcceeeecCCceEEccCCCCCeeeeHHhHHHHHhC
Confidence            65   345678999999999988888999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCccceeecCCCCceEEEEEeeCCCCCCee-eCC------CCCCCCCcccHHHHHHHHH
Q 019160          268 DVYKSVEHKVMANGKMERYSVAYFLCPSYDSSI-GSC------TEPSTYRKFTFEEYRKQVQ  322 (345)
Q Consensus       268 G~~~S~~HRVv~~~~~~R~Si~~F~~P~~d~~i-~p~------~~p~~y~~~~~~ey~~~~~  322 (345)
                      |+|+|++|||+.+++.+||||+||++|+.|++| .|.      ++|++|+|+|++||++.++
T Consensus       280 G~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~~~p~~y~~~t~~e~~~~rl  341 (349)
T d1gp6a_         280 GKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKL  341 (349)
T ss_dssp             TSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHH
T ss_pred             CCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCCCCCCCCCCccHHHHHHHHH
Confidence            999999999999989999999999999999876 662      5889999999999999865
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure