Citrus Sinensis ID: 019181

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
MGLCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIEYIFWRSSVE
cccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEcccccEEEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEEEEEEEEEEcccccccccccccEEEEccccccccccccccccccEEEEccccccHHHHHHHHcccccccEEEEcccccccEEEEEccccccccEEEcccccccccEEEEEEEEEccEEEEcccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHcccccccccc
cHHHHHHHHHHHHHHHHHHHcccccccccEHHHHccccccHHHHHHHccHHHHcccccccccccccccccccccEEEEEEEEccccEEEEEEEEcccccEEEEEccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccEEEEEEcccccccEEEEEEEEEEcccccccccccccccEEEEccccccccccccHHccccEEEEcccccccHHHHHHHccccccEEEEEEcccccccEEEEcccccccEEEEcccccccEEEEEEEEEEEccEEEEccHHHEccccccEEEEEcccEEEcccHHHHHHHHHHHHHHHcccccccccc
MGLCLRNCLCIVLIATAAvggvssnhgvfsvkyryagreRSLSLLKEHDARRQQRILAgvdlplggssrpdgvglyyakigigtppkdyyvqvdtgsdimwvnciqckecprrsslgieltlydikdsstgkfvtcdqefchgvyggpltdctantscpyleiygdgssttgyfVQDVVQYdkvsgdlqttstngslifgcgarqsgnldstneeALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLdgingggifaighvvqpevnktplvpnqphysinMTAVQVGLdflnlptdvfgvgdnkgtiidsgttlaylpemvyeplVSKVCDVIEYIFWRSSVE
MGLCLRNCLCIVLIATaavggvssnhgvFSVKYRYAGRERSLSLLKEHDARRQQRIlagvdlplggssrPDGVGLYYAkigigtppKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIEYIFWRSSVE
MGLCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIEYIFWRSSVE
**LCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLK*******QRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGAR************LDGIIGFG***********SSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIEYIFWR****
**LCLRNCLCIVLIATAAVG**************************************************DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCH*************TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGD*QTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIE*********
MGLCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIEYIFWRSSVE
MGLCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIE*********
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGLCLRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIEYIFWRSSVE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query345 2.2.26 [Sep-21-2011]
Q9S9K4 475 Aspartic proteinase-like no no 0.930 0.675 0.449 3e-83
Q766C2438 Aspartic proteinase nepen N/A no 0.794 0.625 0.292 6e-23
Q9LX20 528 Aspartic proteinase-like no no 0.791 0.517 0.308 2e-21
Q3EBM5447 Probable aspartic proteas no no 0.762 0.588 0.305 8e-20
Q766C3437 Aspartic proteinase nepen N/A no 0.759 0.599 0.273 1e-17
Q0IU52 410 Aspartic proteinase Asp1 no no 0.724 0.609 0.271 4e-15
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.663 0.487 0.291 1e-14
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.779 0.538 0.274 2e-13
A2ZC67 410 Aspartic proteinase Asp1 N/A no 0.713 0.6 0.264 2e-13
Q6XBF8437 Aspartic proteinase CDR1 no no 0.713 0.562 0.288 2e-11
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function desciption
 Score =  308 bits (790), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 147/327 (44%), Positives = 221/327 (67%), Gaps = 6/327 (1%)

Query: 5   LRNCLCIVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPL 64
           LR  LCIV+     V   +S + VF  ++++AG++++L   K HD RR  R+LA +DLPL
Sbjct: 3   LRRKLCIVVAVFVIVIEFASANFVFKAQHKFAGKKKNLEHFKSHDTRRHSRMLASIDLPL 62

Query: 65  GGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYD 124
           GG SR D VGLY+ KI +G+PPK+Y+VQVDTGSDI+W+NC  C +CP +++L   L+L+D
Sbjct: 63  GGDSRVDSVGLYFTKIKLGSPPKEYHVQVDTGSDILWINCKPCPKCPTKTNLNFRLSLFD 122

Query: 125 IKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKV 184
           +  SST K V CD +FC  +       C     C Y  +Y D S++ G F++D++  ++V
Sbjct: 123 MNASSTSKKVGCDDDFCSFISQS--DSCQPALGCSYHIVYADESTSDGKFIRDMLTLEQV 180

Query: 185 SGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMF 244
           +GDL+T      ++FGCG+ QSG L    + A+DG++GFG+SN+S++SQLA++G  +++F
Sbjct: 181 TGDLKTGPLGQEVVFGCGSDQSGQL-GNGDSAVDGVMGFGQSNTSVLSQLAATGDAKRVF 239

Query: 245 AHCLDGINGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGD 304
           +HCLD + GGGIFA+G V  P+V  TP+VPNQ HY++ +  + V    L+LP  +     
Sbjct: 240 SHCLDNVKGGGIFAVGVVDSPKVKTTPMVPNQMHYNVMLMGMDVDGTSLDLPRSIV---R 296

Query: 305 NKGTIIDSGTTLAYLPEMVYEPLVSKV 331
           N GTI+DSGTTLAY P+++Y+ L+  +
Sbjct: 297 NGGTIVDSGTTLAYFPKVLYDSLIETI 323

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
255549236 492 Aspartic proteinase nepenthesin-1 precur 0.901 0.632 0.810 1e-147
224128838 485 predicted protein [Populus trichocarpa] 0.898 0.639 0.787 1e-142
297848856 484 aspartyl protease family protein [Arabid 0.898 0.640 0.767 1e-139
449446233 498 PREDICTED: aspartic proteinase-like prot 0.904 0.626 0.75 1e-139
449518783420 PREDICTED: aspartic proteinase-like prot 0.904 0.742 0.756 1e-139
356523724 488 PREDICTED: aspartic proteinase-like prot 0.892 0.631 0.770 1e-138
18390579 485 aspartyl protease-like protein [Arabidop 0.944 0.672 0.729 1e-138
359478045 502 PREDICTED: aspartic proteinase-like prot 0.892 0.613 0.758 1e-138
296089645 477 unnamed protein product [Vitis vinifera] 0.892 0.645 0.758 1e-137
6850312388 Contains similarity to nucellin from Hor 0.942 0.837 0.731 1e-137
>gi|255549236|ref|XP_002515672.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223545215|gb|EEF46724.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 252/311 (81%), Positives = 282/311 (90%)

Query: 21  GVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRPDGVGLYYAKI 80
            VSS+ GVFSVKYRYAG++RSLS LK HD RRQ RILAGVDLPLGGS RPD VGLYYAK+
Sbjct: 31  AVSSDSGVFSVKYRYAGQQRSLSDLKAHDDRRQLRILAGVDLPLGGSGRPDTVGLYYAKV 90

Query: 81  GIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEF 140
           GIGTP KDYYVQVDTGSDIMWVNCIQC+ECPR SSLG+ELTLY+IKDS +GK V CD+EF
Sbjct: 91  GIGTPSKDYYVQVDTGSDIMWVNCIQCRECPRTSSLGMELTLYNIKDSVSGKLVPCDEEF 150

Query: 141 CHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFG 200
           C+ V GGPL+ CTAN SCPYLEIYGDGSST GYFV+DVVQYD+VSGDLQTTS+NGS+IFG
Sbjct: 151 CYEVNGGPLSGCTANMSCPYLEIYGDGSSTAGYFVKDVVQYDRVSGDLQTTSSNGSVIFG 210

Query: 201 CGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIG 260
           CGARQSG+L  T+EEALDGI+GFGKSNSSMISQLA++  V+K+FAHCLDGINGGGIFAIG
Sbjct: 211 CGARQSGDLGPTSEEALDGILGFGKSNSSMISQLAATRKVKKIFAHCLDGINGGGIFAIG 270

Query: 261 HVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLP 320
           HVVQP+VN TPL+PNQPHY++NMTAVQVG DFL+LPT+ F  GD KG IIDSGTTLAYLP
Sbjct: 271 HVVQPKVNMTPLIPNQPHYNVNMTAVQVGEDFLHLPTEEFEAGDRKGAIIDSGTTLAYLP 330

Query: 321 EMVYEPLVSKV 331
           E+VYEPLVSK+
Sbjct: 331 EIVYEPLVSKI 341

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128838|ref|XP_002320434.1| predicted protein [Populus trichocarpa] gi|222861207|gb|EEE98749.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297848856|ref|XP_002892309.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297338151|gb|EFH68568.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449446233|ref|XP_004140876.1| PREDICTED: aspartic proteinase-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449518783|ref|XP_004166415.1| PREDICTED: aspartic proteinase-like protein 2-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356523724|ref|XP_003530485.1| PREDICTED: aspartic proteinase-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|18390579|ref|NP_563751.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|332189782|gb|AEE27903.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359478045|ref|XP_002267046.2| PREDICTED: aspartic proteinase-like protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296089645|emb|CBI39464.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|6850312|gb|AAF29389.1|AC009999_9 Contains similarity to nucellin from Hordeum vulgare gb|U87148. ESTs gb|T22068, gb|F14251, gb|F14237, gb|F14242 come from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query345
TAIR|locus:2198753 485 AT1G05840 [Arabidopsis thalian 0.927 0.659 0.741 1.3e-130
TAIR|locus:2075512 488 AT3G02740 [Arabidopsis thalian 0.898 0.635 0.533 1.3e-91
TAIR|locus:2183617 482 AT5G36260 [Arabidopsis thalian 0.921 0.659 0.495 3e-85
TAIR|locus:2200365 475 AT1G65240 [Arabidopsis thalian 0.930 0.675 0.449 3.7e-80
TAIR|locus:2172661 493 AT5G22850 [Arabidopsis thalian 0.863 0.604 0.433 1.7e-66
TAIR|locus:2200023 492 AT1G08210 [Arabidopsis thalian 0.855 0.599 0.399 1.3e-61
TAIR|locus:2040545 512 AT2G36670 [Arabidopsis thalian 0.857 0.578 0.392 1.5e-60
TAIR|locus:2010786431 AT1G64830 [Arabidopsis thalian 0.713 0.570 0.327 2.7e-29
TAIR|locus:2206184445 AT1G31450 [Arabidopsis thalian 0.742 0.575 0.344 2.4e-28
TAIR|locus:2077700535 AT3G59080 "AT3G59080" [Arabido 0.724 0.467 0.3 2.8e-27
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
 Identities = 238/321 (74%), Positives = 275/321 (85%)

Query:    11 IVLIATAAVGGVSSNHGVFSVKYRYAGRERSLSLLKEHDARRQQRILAGVDLPLGGSSRP 70
             ++   TA V  VS N GVF+VKYRY   + SL+ LKEHD RRQ  ILAG+DLPLGG+ RP
Sbjct:    16 LIWFLTALVS-VSCNPGVFNVKYRYPRLQGSLTALKEHDDRRQLTILAGIDLPLGGTGRP 74

Query:    71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSST 130
             D  GLYYAKIGIGTP K YYVQVDTGSDIMWVNCIQCK+CPRRS+LGIELTLY+I +S +
Sbjct:    75 DIPGLYYAKIGIGTPAKSYYVQVDTGSDIMWVNCIQCKQCPRRSTLGIELTLYNIDESDS 134

Query:   131 GKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQT 190
             GK V+CD +FC+ + GGPL+ C AN SCPYLEIYGDGSST GYFV+DVVQYD V+GDL+T
Sbjct:   135 GKLVSCDDDFCYQISGGPLSGCKANMSCPYLEIYGDGSSTAGYFVKDVVQYDSVAGDLKT 194

Query:   191 TSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDG 250
              + NGS+IFGCGARQSG+LDS+NEEALDGI+GFGK+NSSMISQLASSG V+K+FAHCLDG
Sbjct:   195 QTANGSVIFGCGARQSGDLDSSNEEALDGILGFGKANSSMISQLASSGRVKKIFAHCLDG 254

Query:   251 INGGGIFAIGHVVQPEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTII 310
              NGGGIFAIG VVQP+VN TPLVPNQPHY++NMTAVQVG +FL +P D+F  GD KG II
Sbjct:   255 RNGGGIFAIGRVVQPKVNMTPLVPNQPHYNVNMTAVQVGQEFLTIPADLFQPGDRKGAII 314

Query:   311 DSGTTLAYLPEMVYEPLVSKV 331
             DSGTTLAYLPE++YEPLV K+
Sbjct:   315 DSGTTLAYLPEIIYEPLVKKI 335
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0031225 "anchored to membrane" evidence=TAS
GO:0000303 "response to superoxide" evidence=RCA
GO:0006301 "postreplication repair" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0006869 "lipid transport" evidence=RCA
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0008219 "cell death" evidence=RCA
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009873 "ethylene mediated signaling pathway" evidence=RCA
GO:0010351 "lithium ion transport" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0044265 "cellular macromolecule catabolic process" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183617 AT5G36260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200365 AT1G65240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172661 AT5G22850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200023 AT1G08210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040545 AT2G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077700 AT3G59080 "AT3G59080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 1e-41
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 8e-37
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 1e-34
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 1e-29
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 8e-26
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 7e-23
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 5e-13
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 7e-11
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 1e-08
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 6e-08
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 2e-07
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 4e-07
cd05487326 cd05487, renin_like, Renin stimulates production o 1e-06
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 2e-05
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 3e-05
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 2e-04
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 2e-04
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 2e-04
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 4e-04
cd05473 364 cd05473, beta_secretase_like, Beta-secretase, aspa 5e-04
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 7e-04
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 0.002
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  145 bits (369), Expect = 1e-41
 Identities = 74/264 (28%), Positives = 101/264 (38%), Gaps = 77/264 (29%)

Query: 76  YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVT 135
           Y   + IGTPP+ + + VDTGSD+ W  C                               
Sbjct: 2   YLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------- 30

Query: 136 CDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNG 195
                                 C Y   YGDGSST+G    +            +     
Sbjct: 31  ----------------------CSYEYSYGDGSSTSGVLATETF---TFGDSSVSV---P 62

Query: 196 SLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGI---N 252
           ++ FGCG    G          DGI+G G+   S++SQL S+G     F++CL       
Sbjct: 63  NVAFGCGTDNEGGSFGGA----DGILGLGRGPLSLVSQLGSTGNK---FSYCLVPHDDTG 115

Query: 253 GGGIFAIG---HVVQPEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLPTDVFGVGD-- 304
           G     +G    +    V  TPLV N     +Y +N+  + VG   L +P  VF +    
Sbjct: 116 GSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDG 175

Query: 305 NKGTIIDSGTTLAYLPEMVYEPLV 328
           + GTIIDSGTTL YLP+  Y  L 
Sbjct: 176 SGGTIIDSGTTLTYLPDPAYPDLT 199

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 345
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
PTZ00165 482 aspartyl protease; Provisional 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473 364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.89
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 98.59
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.99
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.4
PF1365090 Asp_protease_2: Aspartyl protease 96.02
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.44
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 93.6
COG3577215 Predicted aspartyl protease [General function pred 92.92
PF11925 370 DUF3443: Protein of unknown function (DUF3443); In 91.91
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 90.53
PF1365090 Asp_protease_2: Aspartyl protease 89.7
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 88.77
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 87.53
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 87.25
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 87.19
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 85.86
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 84.78
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 80.39
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3e-48  Score=373.47  Aligned_cols=312  Identities=30%  Similarity=0.495  Sum_probs=242.2

Q ss_pred             HHHHHHHHHHHhhcccCcceeEEeEEecCCC------c----cCHHHHHHHhHHHHHHHhcc--cCcCCCCCCCCCCcee
Q 019181            8 CLCIVLIATAAVGGVSSNHGVFSVKYRYAGR------E----RSLSLLKEHDARRQQRILAG--VDLPLGGSSRPDGVGL   75 (345)
Q Consensus         8 ~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~------~----~~~~~~~~~~~~r~~~~~~~--~~~p~~~~~~~~~~~~   75 (345)
                      .|+++.+.+.+...+.....+++|.|+.++.      .    ..+.+..+|+++|.+++.+.  ...|+. .+....++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~   84 (431)
T PLN03146          6 ALCLFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQ-SDLISNGGE   84 (431)
T ss_pred             HHHHHHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCccc-cCcccCCcc
Confidence            3455555555555666677889999887541      1    22455566666666665322  223333 222346789


Q ss_pred             EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCCCC
Q 019181           76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN  155 (345)
Q Consensus        76 Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~~~  155 (345)
                      |+++|.||||+|++.|++||||+++||+|.+|..|..+..     +.|||++|+||+.++|+++.|...+..  ..|..+
T Consensus        85 Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~-----~~fdps~SST~~~~~C~s~~C~~~~~~--~~c~~~  157 (431)
T PLN03146         85 YLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVS-----PLFDPKKSSTYKDVSCDSSQCQALGNQ--ASCSDE  157 (431)
T ss_pred             EEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCC-----CcccCCCCCCCcccCCCCcccccCCCC--CCCCCC
Confidence            9999999999999999999999999999999999987643     789999999999999999999866532  347666


Q ss_pred             CCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCCcHHHHhh
Q 019181          156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLA  235 (345)
Q Consensus       156 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~  235 (345)
                      +.|.|.+.|+||+.+.|.+++|+|+|++....   ...++++.|||++...+.|.    ...+||||||++..|++.||.
T Consensus       158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~---~~~v~~~~FGc~~~~~g~f~----~~~~GilGLG~~~~Sl~sql~  230 (431)
T PLN03146        158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGR---PVSFPGIVFGCGHNNGGTFD----EKGSGIVGLGGGPLSLISQLG  230 (431)
T ss_pred             CCCeeEEEeCCCCceeeEEEEEEEEeccCCCC---cceeCCEEEeCCCCCCCCcc----CCCceeEecCCCCccHHHHhh
Confidence            78999999999998799999999999875422   12467999999998776553    247899999999999999997


Q ss_pred             hcCCCCCceEEeecCC----CCcceEEeCCCCC---CCceEecCCCC--CCceEEEEeEEEECCEEeeCCCcccccCCCc
Q 019181          236 SSGGVRKMFAHCLDGI----NGGGIFAIGHVVQ---PEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDNK  306 (345)
Q Consensus       236 ~~g~i~~~Fs~~l~~~----~~~G~l~~Gg~d~---~~~~~~p~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~  306 (345)
                      .  .+.++||+||.+.    ...|.|+||+...   ..+.|+|++.+  +.+|.|.|++|+||++.+.++...+...+..
T Consensus       231 ~--~~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g  308 (431)
T PLN03146        231 S--SIGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEG  308 (431)
T ss_pred             H--hhCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCC
Confidence            5  3556999999652    2479999999642   34899999743  4689999999999999988766655323345


Q ss_pred             cEEEcccccccccChHHHHHHHHHHHhhcc
Q 019181          307 GTIIDSGTTLAYLPEMVYEPLVSKVCDVIE  336 (345)
Q Consensus       307 ~~i~DTGts~~~lp~~~~~~i~~~i~~~~~  336 (345)
                      .+||||||++++||+++|+++.++|.+.+.
T Consensus       309 ~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~  338 (431)
T PLN03146        309 NIIIDSGTTLTLLPSDFYSELESAVEEAIG  338 (431)
T ss_pred             cEEEeCCccceecCHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999887664

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
1b5f_A239 Native Cardosin A From Cynara Cardunculus L. Length 5e-07
3oad_A166 Design And Optimization Of New Piperidines As Renin 3e-05
3d91_A341 Human Renin In Complex With Remikiren Length = 341 4e-05
2i4q_A336 Human ReninPF02342674 COMPLEX Length = 336 4e-05
3vcm_A335 Crystal Structure Of Human Prorenin Length = 335 4e-05
1hrn_A337 High Resolution Crystal Structures Of Recombinant H 4e-05
2bks_A340 Crystal Structure Of Renin-Pf00074777 Complex Lengt 4e-05
2g24_A333 Ketopiperazine-Based Renin Inhibitors: Optimization 4e-05
2x0b_A383 Crystal Structure Of Human Angiotensinogen Complexe 5e-05
4aa9_A320 Camel Chymosin At 1.6a Resolution Length = 320 2e-04
1lyw_A97 Cathepsin D At Ph 7.5 Length = 97 3e-04
3vla_A 413 Crystal Structure Of Edgp Length = 413 3e-04
3vlb_A 413 Crystal Structure Of Xeg-Edgp Length = 413 4e-04
1qdm_A 478 Crystal Structure Of Prophytepsin, A Zymogen Of A B 4e-04
1czi_E323 Chymosin Complex With The Inhibitor Cp-113972 Lengt 5e-04
3cms_A323 Engineering Enzyme Sub-Site Specificity: Preparatio 5e-04
1smr_A335 The 3-D Structure Of Mouse Submaxillary Renin Compl 7e-04
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 7e-04
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239 Back     alignment and structure 
Iteration: 1

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 33/107 (30%)
Query: 76  YYAKIGIGTPPKDYYVQVDTGSDIMWV---NCIQCKECPRRSSLGIELTLYDIKDSSTGK 132
           Y+ +IGIGTPP+ + V  DTGS ++WV    CI  K C   S       +Y+  DSST K
Sbjct: 15  YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHS-------MYESSDSSTYK 67
Query: 133 FVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVV 179
                    +G +G                IYG G S TG+F QD V
Sbjct: 68  --------ENGTFGAI--------------IYGTG-SITGFFSQDSV 91
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 166 Back     alignment and structure
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341 Back     alignment and structure
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336 Back     alignment and structure
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335 Back     alignment and structure
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337 Back     alignment and structure
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340 Back     alignment and structure
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333 Back     alignment and structure
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383 Back     alignment and structure
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 Back     alignment and structure
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5 Length = 97 Back     alignment and structure
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley Vacuolar Aspartic Proteinase. Length = 478 Back     alignment and structure
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323 Back     alignment and structure
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323 Back     alignment and structure
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query345
3aup_A 403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 4e-57
3vla_A 413 EDGP; extracellular, inhibitor, plant protein; HET 1e-51
1t6e_X 381 Xylanase inhibitor; two beta-barrel domain structu 4e-50
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 1e-22
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 2e-22
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 7e-22
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 7e-22
2ewy_A 383 Beta-secretase 2; BACE2, aspartic protease, hydrol 3e-21
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 1e-20
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 3e-20
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 3e-20
2qp8_A 395 Beta-secretase 1; BACE1, protease, alternative spl 5e-19
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 1e-18
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 2e-18
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 3e-18
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 6e-18
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 3e-17
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 4e-17
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 5e-17
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 9e-17
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 1e-16
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-16
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 2e-16
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 3e-16
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 3e-16
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 3e-16
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 5e-16
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 7e-16
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 9e-16
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 4e-15
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 9e-13
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 4e-10
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  189 bits (481), Expect = 4e-57
 Identities = 56/292 (19%), Positives = 93/292 (31%), Gaps = 34/292 (11%)

Query: 57  LAGVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSL 116
           +  V LP+         GL++A +   TP     V VD   + +WVNC Q        + 
Sbjct: 7   INLVVLPVQNDG---STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAP 63

Query: 117 GIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQ 176
                       S      C               C  NT            +  G   +
Sbjct: 64  -----FCHSTQCSRANTHQCLSCPA-----ASRPGCHKNTCGLMSTNPITQQTGLGELGE 113

Query: 177 DVVQYDKVSGDLQTTSTNGS---LIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQ 233
           DV+      G  Q      +    +F C                 G+ G G +  S+ +Q
Sbjct: 114 DVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGL--PRNTQGVAGLGHAPISLPNQ 171

Query: 234 LASSGGVRKMFAHCLDGI-NGGGIFAIG-----------HVVQPEVNKTPLVPN-QPHYS 280
           LAS  G+++ F  CL       G    G             +  ++  TPL    Q  Y+
Sbjct: 172 LASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYN 231

Query: 281 INMTAVQVG---LDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVS 329
           + + ++++    +  LN  +       + GT+I + T    L + VY+    
Sbjct: 232 VRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQ 283
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3vla_A 413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3aup_A 403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
2ewy_A 383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
2qp8_A 395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3vf3_A 402 Beta-secretase 1; structure-based drug design, hyd 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1t6e_X 381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.88
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.87
2hs1_A99 HIV-1 protease; ultra-high resolution active site 87.52
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 86.46
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 85.3
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 84.74
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 80.57
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 80.33
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
Probab=100.00  E-value=4.8e-45  Score=344.98  Aligned_cols=227  Identities=26%  Similarity=0.401  Sum_probs=192.7

Q ss_pred             CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCC
Q 019181           70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL  149 (345)
Q Consensus        70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~  149 (345)
                      ++.+..|+++|+||||+|+|.|+|||||+++||+|..|..|     .|..++.|||++|+||+..               
T Consensus        52 n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~-----~C~~~~~y~~~~SsT~~~~---------------  111 (370)
T 3psg_A           52 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSL-----ACSDHNQFNPDDSSTFEAT---------------  111 (370)
T ss_dssp             GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSG-----GGTTSCCBCGGGCTTCEEE---------------
T ss_pred             eccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCc-----ccCCCCCCCCccCcCcEEC---------------
Confidence            77899999999999999999999999999999999999743     2334589999999999984               


Q ss_pred             CCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCC-CCCCCCCCcceeeecCCCCC
Q 019181          150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKSNS  228 (345)
Q Consensus       150 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GilGLg~~~~  228 (345)
                             +|.|.+.|++|+ +.|.+++|+|++++..        ++++.|||+....+. |.   ...+|||||||++..
T Consensus       112 -------~~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~--------v~~~~Fg~a~~~~~~~~~---~~~~dGIlGLg~~~~  172 (370)
T 3psg_A          112 -------SQELSITYGTGS-MTGILGYDTVQVGGIS--------DTNQIFGLSETEPGSFLY---YAPFDGILGLAYPSI  172 (370)
T ss_dssp             -------EEEEEEESSSCE-EEEEEEEEEEEETTEE--------EEEEEEEEECSCCCGGGG---GCSCSEEEECSCGGG
T ss_pred             -------CcEEEEEeCCce-EEEEEEEEEEeeCCcc--------cCCeEEEEEEeecccccc---cCCccceeccCCccc
Confidence                   467999999998 5999999999999854        568999999987653 32   256899999999754


Q ss_pred             ------cHHHHhhhcCCC-CCceEEeecCC-CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEeeCC
Q 019181          229 ------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLP  296 (345)
Q Consensus       229 ------s~~~ql~~~g~i-~~~Fs~~l~~~-~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~  296 (345)
                            +++++|++||+| +++||+||.+. ..+|.|+|||+|+    +++.|+|+. ...+|.|.+++|+|+++.+.. 
T Consensus       173 s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~-  250 (370)
T 3psg_A          173 SASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVS-VEGYWQITLDSITMDGETIAC-  250 (370)
T ss_dssp             CGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECS-EETTEEEEECEEESSSSEEEC-
T ss_pred             cccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeeccc-ccceeEEEEeEEEECCEEEec-
Confidence                  589999999999 79999999985 4589999999996    679999997 568999999999999987652 


Q ss_pred             CcccccCCCccEEEcccccccccChHHHHHHHHHHHhhc----ccccccCC
Q 019181          297 TDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVI----EYIFWRSS  343 (345)
Q Consensus       297 ~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~----~~~~~~~~  343 (345)
                            .++..+|+||||+++++|.+++++|.+++++..    .|.++|+.
T Consensus       251 ------~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~~g~~~v~C~~  295 (370)
T 3psg_A          251 ------SGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSS  295 (370)
T ss_dssp             ------TTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCEECCGGG
T ss_pred             ------CCCceEEEcCCCCcEECCHHHHHHHHHHhCCcccCCCcEEEECCC
Confidence                  235679999999999999999999999998764    36778875
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 345
d1t6ex_ 381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 2e-31
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-23
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 4e-21
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-20
d2qp8a1 387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 2e-20
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 4e-20
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 4e-20
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 1e-18
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 3e-18
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 4e-18
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 6e-18
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 8e-18
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 1e-17
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 2e-17
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 6e-17
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 7e-17
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 1e-16
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 1e-16
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 2e-16
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 2e-16
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 1e-15
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 6e-13
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  119 bits (299), Expect = 2e-31
 Identities = 45/265 (16%), Positives = 77/265 (29%), Gaps = 30/265 (11%)

Query: 74  GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKF 133
            LY      G       + +D    ++W  C   +         I  +      ++    
Sbjct: 14  SLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPA-----EIPCSSPTCLLANAYPA 63

Query: 134 VTCDQEFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTST 193
             C    C        +D        Y      G+   G         +   G    +  
Sbjct: 64  PGCPAPSC-------GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKV 116

Query: 194 NGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGING 253
           N  ++  C   +             G+ G   S  ++ +Q+AS+  V   F  CL     
Sbjct: 117 NVGVLAACAPSKLLASLPRGS---TGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGP 173

Query: 254 GGIFAIGHVVQP-----EVNKTPLVPNQ--PHYSINMTAVQVGLDFLNLPTDVFGVGDNK 306
           G     G  V        +  TPLV     P + I+  ++ VG   + +P      G   
Sbjct: 174 GVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATG--- 230

Query: 307 GTIIDSGTTLAYLPEMVYEPLVSKV 331
           G ++ +      L   VY PL+   
Sbjct: 231 GVMLSTRLPYVLLRPDVYRPLMDAF 255
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query345
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d2qp8a1 387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1t6ex_ 381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 81.16
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 80.65
d2fmba_104 EIAV protease {Equine infectious anemia virus [Tax 80.15
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.4e-41  Score=316.85  Aligned_cols=228  Identities=25%  Similarity=0.395  Sum_probs=191.5

Q ss_pred             CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCC
Q 019181           70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL  149 (345)
Q Consensus        70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~  149 (345)
                      ++.+..|+++|.||||+|+|.|+|||||+++||+|..|..|..+     .++.|||++|+||+..               
T Consensus        52 n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~-----~~~~yd~~~Sst~~~~---------------  111 (370)
T d3psga_          52 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACS-----DHNQFNPDDSSTFEAT---------------  111 (370)
T ss_dssp             GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGT-----TSCCBCGGGCTTCEEE---------------
T ss_pred             cccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccc-----cccccCCCcccccccC---------------
Confidence            56788999999999999999999999999999999999988644     3489999999999984               


Q ss_pred             CCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCC--
Q 019181          150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN--  227 (345)
Q Consensus       150 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~--  227 (345)
                             .|.|.+.|++|+. .|.++.|++.+++..        +.++.||++....+.+..  ....+||+|||++.  
T Consensus       112 -------~~~~~~~Yg~Gs~-~G~~~~d~~~~~~~~--------~~~~~f~~~~~~~~~~~~--~~~~~Gi~gl~~~~~~  173 (370)
T d3psga_         112 -------SQELSITYGTGSM-TGILGYDTVQVGGIS--------DTNQIFGLSETEPGSFLY--YAPFDGILGLAYPSIS  173 (370)
T ss_dssp             -------EEEEEEESSSCEE-EEEEEEEEEEETTEE--------EEEEEEEEECSCCCGGGG--GCSCSEEEECSCGGGC
T ss_pred             -------CCcEEEEeCCceE-EEEEEEEEEeeecee--------eeeeEEEEEeeccCceec--ccccccccccccCccc
Confidence                   4678999999985 899999999998865        458999999887654432  25679999999864  


Q ss_pred             ----CcHHHHhhhcCCC-CCceEEeecCC-CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEeeCCC
Q 019181          228 ----SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT  297 (345)
Q Consensus       228 ----~s~~~ql~~~g~i-~~~Fs~~l~~~-~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~  297 (345)
                          .+++++|.++|+| .++|++|+.+. ..+|.++|||+|+    +.++|+|+. ...+|.+.++++.++++.+... 
T Consensus       174 ~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~-~~~~w~v~~~~i~v~g~~~~~~-  251 (370)
T d3psga_         174 ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVS-VEGYWQITLDSITMDGETIACS-  251 (370)
T ss_dssp             GGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECS-EETTEEEEECEEESSSSEEECT-
T ss_pred             ccCCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeec-ccceEEEEEeeEEeCCeEEecC-
Confidence                3599999999999 79999999886 5578999999985    568999986 6689999999999999877532 


Q ss_pred             cccccCCCccEEEcccccccccChHHHHHHHHHHHhhcc----cccccCC
Q 019181          298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIE----YIFWRSS  343 (345)
Q Consensus       298 ~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~~----~~~~~~~  343 (345)
                            .+..++|||||++++||++++++|++++.+...    +.++|..
T Consensus       252 ------~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~~~~~~~~~~~C~~  295 (370)
T d3psga_         252 ------GGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSS  295 (370)
T ss_dssp             ------TCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCEECCGGG
T ss_pred             ------CCccEEEecCCceEeCCHHHHHHHHHHhCCeeecCCcEEEeccc
Confidence                  345699999999999999999999999987643    5566654
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]} Back     information, alignment and structure