Citrus Sinensis ID: 019228

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKGKCQKFLGSDT
Secondary Structure (PSIPRED)
cccccccccccEEEcccccccccHHHHHccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccEEEEccEEEEcccccccccHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccccccEEEEEccccccccccEEHHHHcccccHHccccccccccccccccEEEcccccccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEcccccccccccccccccHccHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHEEccHHcccccccccccccccccccccccccccHHcccccccHHHHHHccHHHHHHHHccccccccccccccccccccccccccccccEEEHccccccccHHHHEEcccccEEEEcccEEEccccccccccHHHHHHHHHHHccccccccccccEEEEEEEccccHccHHHHHHcccEEEEEEccccHHHHHHHHHHHccccEEEEEHcccccccccccEcEHHHccccccccccccccEEEEccc
Coil and Loop (DISEMBL)
msrpllrgvsgmrisgnghdpwdleMKERNekedlekdhstdqsylalssgtprsrqnFTMLFLKFSLIAIVFLALTGSFWWTISistssrghiyhgYRRLQEQLVSDLWDigeislgssrskdlefcsedfenyvpcfnesrnlalgysngdevdrhcGQELkqhclvlppvkyriplrwptgrdviwvSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIgcgygsfgahlFSKELLTMCIANYEASGSQVQLTLERglpamigsfaskqlpypslsfdmlhcarcgvdwdqkgkcqkflgsdt
Flexible Loop (DISEMBL)
msrpllrgvsgmrisgnghdpwdlEMKERNEKEdlekdhstdqsylalssgtprsRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQELKqhclvlppvkyriplrwptgrdviwvsnvkitaqevlssgslTKRMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKGKCQKFLGSDT
Low Complexity Region (SEG)
MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFwwtisistssRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKGKCQKFLGSDT
Disordered region (IsUnstruct)
*********************************************************NFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKGKCQK******
Disordered Region (DISOPRED)
*************************************************************LFLKFSLIAIVFLALTGSFWW******************************************LEFCSEDFENYVPCFNESRNLALGY*NGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKGKCQKFLGSDT
Disordered Region (DISEMBL)
MSRPLLRGVSGMRISGNGHDPWDLEMKERN********************GTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKGKCQKFLGSDT
Disordered Region (DISPRO)
********************************************************QNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYRRLQEQL***************RSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKGKCQKFLGS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKGKCQKFLGSDT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	344	2.2.26 [Sep-21-2011]
Q9C9Q8	684	Probable pectin methyltra	yes	no	0.965	0.485	0.680	1e-134
Q3EC77	606	Probable methyltransferas	no	no	0.805	0.457	0.559	4e-84
Q8GYW9	603	Probable methyltransferas	no	no	0.761	0.434	0.532	1e-78
Q940J9	623	Probable methyltransferas	no	no	0.607	0.335	0.348	2e-36
Q8VZV7	612	Probable methyltransferas	no	no	0.630	0.354	0.340	5e-36
Q9LZA4	600	Probable methyltransferas	no	no	0.587	0.336	0.388	2e-35
Q9ZW75	611	Probable methyltransferas	no	no	0.569	0.320	0.395	3e-35
Q8H118	611	Probable methyltransferas	no	no	0.604	0.340	0.341	8e-35
Q93YV7	608	Probable methyltransferas	no	no	0.595	0.337	0.340	5e-34
O22285	694	Probable methyltransferas	no	no	0.601	0.298	0.340	8e-34

>sp|Q9C9Q8|PMTT_ARATH Probable pectin methyltransferase QUA2 OS=Arabidopsis thaliana GN=QUA2 PE=1 SV=2

 Score =  477 bits (1228), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/354 (68%), Positives = 281/354 (79%), Gaps = 22/354 (6%)

Query: 1   MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHS-----------TDQSYLALS 49
           MS PL RG+SG+R+S +  D  D +MK++ E+    ++++           ++QS     
Sbjct: 1   MSMPLQRGISGVRVSDSSDDLRDSQMKDKTERARSTENNNLTLRFPFGFLFSNQSSSKHG 60

Query: 50  SG----------TPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYR 99
            G          + RSR    +LFLK SL+ IV +AL GSFWWTISISTSSRGH+YH YR
Sbjct: 61  GGGENGFSADPYSARSRHRLMLLFLKISLVLIVVIALAGSFWWTISISTSSRGHVYHNYR 120

Query: 100 RLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC 159
           RLQEQLVSDLWDIGEISLG +R K+LE+C+ + EN+VPCFN S NLALGYSNGDE DR C
Sbjct: 121 RLQEQLVSDLWDIGEISLGPNRWKELEYCNIESENFVPCFNVSENLALGYSNGDENDRFC 180

Query: 160 GQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS 219
           G   KQ CL LPPVKYR+PLRWPTG+D+IW SNVKITAQEV+SSGS+TKRMMM+E++QIS
Sbjct: 181 GPGSKQECLELPPVKYRVPLRWPTGKDIIWHSNVKITAQEVVSSGSITKRMMMMEDDQIS 240

Query: 220 FRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTM 279
           FRSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGAHL SK++LTM
Sbjct: 241 FRSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGAHLLSKQILTM 299

Query: 280 CIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
           CIANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+DWDQK
Sbjct: 300 CIANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDWDQK 353

May be involved in the synthesis of homogalacturonan. Required for normal cell adhesion and plant development.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q3EC77|PMT5_ARATH Probable methyltransferase PMT5 OS=Arabidopsis thaliana GN=At2g03480 PE=2 SV=2

 Score =  311 bits (797), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 159/284 (55%), Positives = 206/284 (72%), Gaps = 7/284 (2%)

Query: 53  PRSRQNFTMLFLKFSLIAIV-FLALTGSFWWTISISTSSRGHIYHGYRRLQEQLVSDLWD 111
           PR R    +LF    ++A+V  LA   S  +  S S++   +IY  YRR++EQ   D  D
Sbjct: 17  PRIR---GLLFFIVGVVALVTILAPLTSNSYDSSSSSTLVPNIYSNYRRIKEQAAVDYLD 73

Query: 112 IGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQEL-KQHCLVL 170
           +  +SLG+S  K+  FC ++ E+YVPC+N + NL  G   G+E+DRHC  E  K+ C+V 
Sbjct: 74  LRSLSLGASL-KEFPFCGKERESYVPCYNITGNLLAGLQEGEELDRHCEFEREKERCVVR 132

Query: 171 PPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSAS-LIFDG 229
           PP  Y+IPLRWP GRD+IW  NVKIT  + LSSG++T R+M+LEE QI+F S   L+FDG
Sbjct: 133 PPRDYKIPLRWPLGRDIIWSGNVKITKDQFLSSGTVTTRLMLLEENQITFHSEDGLVFDG 192

Query: 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 289
           V+DY+ QIAEMIGL +++ F  AGVRT+LDIGCG+GSFGAHL S +L+ +CIA YEA+GS
Sbjct: 193 VKDYARQIAEMIGLGSDTEFAQAGVRTVLDIGCGFGSFGAHLVSLKLMPICIAEYEATGS 252

Query: 290 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
           QVQL LERGLPAMIG+F SKQLPYP+LSFDM+HCA+CG  WD K
Sbjct: 253 QVQLALERGLPAMIGNFFSKQLPYPALSFDMVHCAQCGTTWDIK 296

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8GYW9|PMT4_ARATH Probable methyltransferase PMT4 OS=Arabidopsis thaliana GN=At1g13860 PE=2 SV=2

 Score =  293 bits (750), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 147/276 (53%), Positives = 192/276 (69%), Gaps = 14/276 (5%)

Query: 61  MLFLKFSLIAIVFLALTGS-FWWTISISTSSRGHIYHGYRRLQEQLVSDLWDIGEISLGS 119
           +LFL   +IA++ + +  S    T S +     +IY  Y R++EQ   D  D+   SLG 
Sbjct: 16  LLFLTLGVIALITILVPNSDSSSTTSTTRVPPSNIYSNYGRVKEQAAVDYLDLRFFSLGV 75

Query: 120 SRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCG-QELKQHCLVLPPVKYRIP 178
           +R K+   C ++ +NYVPC+N +           E DR+C     ++ CLV PP  Y+IP
Sbjct: 76  NRLKEFPLCGKERDNYVPCYNVT-----------ESDRNCEFAREEERCLVRPPRDYKIP 124

Query: 179 LRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSAS-LIFDGVEDYSHQI 237
           LRWP GRD+IW  NVKIT  + LSSG++TKR+M+LEE QI+F S   LIFDGV+DY+ QI
Sbjct: 125 LRWPVGRDIIWTGNVKITKDQFLSSGTMTKRLMLLEENQITFHSDDGLIFDGVKDYAFQI 184

Query: 238 AEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297
           AEMIGL +++ F  AG+RT+LDIGCG+GSFGAHL S  ++ +CIA YE SGSQVQL LER
Sbjct: 185 AEMIGLGSDTEFPQAGIRTVLDIGCGFGSFGAHLVSLNVMPICIAEYETSGSQVQLALER 244

Query: 298 GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
           GLPAMIG+F SKQLPYP+LSFDM+HCA+CG+ WD K
Sbjct: 245 GLPAMIGNFFSKQLPYPALSFDMVHCAQCGITWDIK 280

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q940J9|PMT8_ARATH Probable methyltransferase PMT8 OS=Arabidopsis thaliana GN=At1g04430 PE=1 SV=1

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 121/218 (55%), Gaps = 9/218 (4%)

Query: 122 SKDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYR 176
           +K    C +     +PC + +      L L  S  +  +RHC   E + +CL+ PP  Y+
Sbjct: 81  AKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYK 140

Query: 177 IPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSH 235
           +P++WP  RD +W +N+  T    L+     +  M+ + E+ISF      F  G + Y  
Sbjct: 141 VPIKWPKSRDEVWKANIPHTH---LAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIA 197

Query: 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295
            IA M+   N+       +RT+LD+GCG  SFGA+L + +++TM +A  +   +Q+Q  L
Sbjct: 198 SIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFAL 257

Query: 296 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
           ERG+PA +G   +K+LPYPS SF+  HC+RC +DW Q+
Sbjct: 258 ERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQR 295

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VZV7|PMT9_ARATH Probable methyltransferase PMT9 OS=Arabidopsis thaliana GN=At5g14430 PE=1 SV=1

 Score =  152 bits (383), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 12/229 (5%)

Query: 114 EISLGSSR---SKDLEFCSEDFENYVPCFNESRN----LALGYSNGDEVDRHCG-QELKQ 165
           +I L  SR    K +  C       +PC + + +    L L  S  +  + HC   E + 
Sbjct: 66  DIVLAVSRFEVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRF 125

Query: 166 HCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASL 225
           +CLV PPV Y+IPLRWP  RD +W +N+  T    L+     +  M++  ++I+F     
Sbjct: 126 NCLVPPPVGYKIPLRWPVSRDEVWKANIPHTH---LAQEKSDQNWMVVNGDKINFPGGGT 182

Query: 226 IF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANY 284
            F +G + Y   +A+M+    +       +R +LD+GCG  SFGA+L S +++ M +A  
Sbjct: 183 HFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPN 242

Query: 285 EASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
           +   +Q+Q  LERG+P+ +G   +K+LPYPS SF++ HC+RC +DW Q+
Sbjct: 243 DVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 291

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LZA4|PMT7_ARATH Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 120/216 (55%), Gaps = 14/216 (6%)

Query: 125 LEFCSEDFENYVPCFN----ESRNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPL 179
           +  C   F  Y+PC N    +    +L  S  +E++RHC   E +  CLV PP  Y+IP+
Sbjct: 83  VNVCPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKDYKIPI 142

Query: 180 RWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS-FRSASLIFD-GVEDYSHQI 237
           RWPT RD +W SNV  T    +  G    +  + E+ Q+  F      F  G  +Y  ++
Sbjct: 143 RWPTSRDYVWRSNVNHTHLAEVKGG----QNWVHEQGQLWWFPGGGTHFKHGAPEYIQRL 198

Query: 238 AEMIGLRNESNFIL-AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296
             M    NE+  +L AGV  +LD+GCG  SF A+L    + TM  A  +   +Q+Q  LE
Sbjct: 199 GNMT--TNETGDLLSAGVEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQFALE 256

Query: 297 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332
           RG+ AMI + A+KQ+PYP+ SFDM+HC+RC VDW +
Sbjct: 257 RGIRAMISAIATKQMPYPAASFDMVHCSRCRVDWHE 292

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/210 (39%), Positives = 113/210 (53%), Gaps = 14/210 (6%)

Query: 125 LEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC---GQELKQHCLVLPPVKYRIPLRW 181
              C ++F NY+PC + S             +RHC    QE K  CLV  P  Y+ P  W
Sbjct: 91  FPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQE-KFRCLVPKPTGYKTPFPW 149

Query: 182 PTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFDG-VEDYSHQIAEM 240
           P  R   W  NV     + L+    T+  + LE ++  F      F G V+DY   I  +
Sbjct: 150 PESRKYAWFRNVPF---KRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDVILSV 206

Query: 241 IGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP 300
           + L + S      +RT+LDIGCG  SFGA L + ++LTM IA  +   +QVQ  LERGLP
Sbjct: 207 LPLASGS------IRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLP 260

Query: 301 AMIGSFASKQLPYPSLSFDMLHCARCGVDW 330
           AM+G  ++ +LPYPS SFDM+HC+RC V+W
Sbjct: 261 AMLGVLSTYKLPYPSRSFDMVHCSRCLVNW 290

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8H118|PMT1_ARATH Probable methyltransferase PMT1 OS=Arabidopsis thaliana GN=At3g23300 PE=1 SV=2

 Score =  147 bits (372), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 118/217 (54%), Gaps = 9/217 (4%)

Query: 123 KDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRI 177
           +    C +     +PC + +      L L  S  +  +RHC   E + +CL+ PP  Y+I
Sbjct: 77  RSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKI 136

Query: 178 PLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQ 236
           P++WP  RD +W  N+  T    L+     +  M+++ E+I+F      F  G + Y   
Sbjct: 137 PIKWPKSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIAS 193

Query: 237 IAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296
           +A M+   N        +RT LD+GCG  SFG +L + E++TM +A  +   +Q+Q  LE
Sbjct: 194 MANMLNFPNNVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALE 253

Query: 297 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
           RG+PA +G   +K+LPYPS SF++ HC+RC +DW Q+
Sbjct: 254 RGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 290

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q93YV7|PMT3_ARATH Probable methyltransferase PMT3 OS=Arabidopsis thaliana GN=At4g14360 PE=1 SV=1

 Score =  145 bits (366), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 121/220 (55%), Gaps = 15/220 (6%)

Query: 123 KDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRI 177
           +    C +     +PC + +      L L  S  +  +RHC   E + +CL+ PP  Y++
Sbjct: 74  RSFPVCDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKV 133

Query: 178 PLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQ 236
           P++WP  RD +W  N+  T    L+     +  M+++ ++I+F      F  G + Y   
Sbjct: 134 PIKWPKSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKY--- 187

Query: 237 IAEMIGLRNESNFILAG---VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293
           IA M  + N  N +L     +RT+ D+GCG  SFG +L S ++LTM +A  +   +Q+Q 
Sbjct: 188 IASMANMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQF 247

Query: 294 TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
            LERG+PA +G   +K+LPYPS SF++ HC+RC +DW Q+
Sbjct: 248 ALERGIPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQR 287

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O22285|PMTB_ARATH Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1

 Score =  144 bits (364), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 120/220 (54%), Gaps = 13/220 (5%)

Query: 116 SLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSN--GDEVDRHCGQELKQ-HCLVLPP 172
           S    R K    C E    Y+PC + +  +    S   G+  +RHC ++ K  +CLV PP
Sbjct: 168 SKARVRIKKFGMCPESMREYIPCLDNTDVIKKLKSTERGERFERHCPEKGKGLNCLVPPP 227

Query: 173 VKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIF-DGVE 231
             YR P+ WP  RD +W SNV  T    L      +  +  ++ +  F      F  G +
Sbjct: 228 KGYRQPIPWPKSRDEVWFSNVPHTR---LVEDKGGQNWISRDKNKFKFPGGGTQFIHGAD 284

Query: 232 DYSHQIAEMIGLRNESNFILAG-VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ 290
            Y  Q+++M+     S+      +R  +D+GCG  SFGA+L S++++TM +A  +   +Q
Sbjct: 285 QYLDQMSKMV-----SDITFGKHIRVAMDVGCGVASFGAYLLSRDVMTMSVAPKDVHENQ 339

Query: 291 VQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330
           +Q  LERG+PAM  +FA+++L YPS +FD++HC+RC ++W
Sbjct: 340 IQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINW 379

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
224082113	401	predicted protein [Populus trichocarpa]	0.968	0.830	0.734	1e-148
225459280	696	PREDICTED: probable pectin methyltransfe	0.968	0.478	0.715	1e-147
224066969	401	predicted protein [Populus trichocarpa]	0.968	0.830	0.726	1e-147
255545748	656	S-adenosylmethionine-dependent methyltra	0.968	0.507	0.711	1e-142
356515784	690	PREDICTED: probable pectin methyltransfe	0.968	0.482	0.697	1e-141
356508083	690	PREDICTED: probable pectin methyltransfe	0.968	0.482	0.694	1e-140
356508085	660	PREDICTED: probable pectin methyltransfe	0.994	0.518	0.684	1e-140
449437010	690	PREDICTED: probable pectin methyltransfe	0.950	0.473	0.676	1e-135
297842599	683	hypothetical protein ARALYDRAFT_895718 [	0.965	0.486	0.688	1e-134
356552892	663	PREDICTED: probable pectin methyltransfe	0.985	0.511	0.689	1e-133

>gi|224082113|ref|XP_002306569.1| predicted protein [Populus trichocarpa] gi|222856018|gb|EEE93565.1| predicted protein [Populus trichocarpa]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 266/362 (73%), Positives = 295/362 (81%), Gaps = 29/362 (8%)

Query: 1   MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLAL------------ 48
           MSRPL RG +G+RISGN +D WD +MK++ EKED++++ S+DQSYLAL            
Sbjct: 1   MSRPLHRGATGIRISGNSNDLWDSQMKDKTEKEDMDRNRSSDQSYLALKFPFRVLFPDNN 60

Query: 49  -----------------SSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSR 91
                            S G+PRSR   T+L LK SL  IV LALTGSFWWTISIST SR
Sbjct: 61  SPSKYVNGESGFASDPFSVGSPRSRHKLTLLLLKLSLAVIVVLALTGSFWWTISISTLSR 120

Query: 92  GHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSN 151
           G I H YRRLQEQLVSD+WDIGE+SLGSSR ++LEFCS++ E YVPCFN S NLALGYS+
Sbjct: 121 GQILHTYRRLQEQLVSDMWDIGELSLGSSRLQELEFCSQESEIYVPCFNVSENLALGYSD 180

Query: 152 GDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMM 211
           G E DRHCGQ  +Q C+VLPPV YRIPL WPTGRD+IWV+NVK+TAQEVLSSGSLTKRMM
Sbjct: 181 GSENDRHCGQSSRQSCMVLPPVNYRIPLHWPTGRDIIWVANVKLTAQEVLSSGSLTKRMM 240

Query: 212 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL 271
           ML+EEQISFRSAS +FDGVEDYSHQIAEMIGLRNESNF+ AGVRTILDIGCGYGSFGAHL
Sbjct: 241 MLDEEQISFRSASPMFDGVEDYSHQIAEMIGLRNESNFVQAGVRTILDIGCGYGSFGAHL 300

Query: 272 FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331
           FSK+LLTMCIANYE SGSQVQLTLERGLPAMIGSF S QLPYPSLSFDMLHCARCGVDWD
Sbjct: 301 FSKQLLTMCIANYEPSGSQVQLTLERGLPAMIGSFTSNQLPYPSLSFDMLHCARCGVDWD 360

Query: 332 QK 333
            K
Sbjct: 361 HK 362

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459280|ref|XP_002285784.1| PREDICTED: probable pectin methyltransferase QUA2 [Vitis vinifera] gi|302141967|emb|CBI19170.3| unnamed protein product [Vitis vinifera]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/362 (71%), Positives = 295/362 (81%), Gaps = 29/362 (8%)

Query: 1   MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLAL------------ 48
           MSR + RGVSG+RISGN HD  D +MK + EKED EK+ S+D + L+             
Sbjct: 1   MSRAMHRGVSGLRISGNSHDSRDSQMKVKTEKEDSEKNRSSDHTCLSFKFPSVPFPDNSS 60

Query: 49  ---------------SSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGH 93
                          S+G+PRSR   TML LK SL+ IV LALTGSF WTISI+TSSRG 
Sbjct: 61  SKHGISENGFASDTFSAGSPRSRHKLTMLVLKLSLVLIVVLALTGSFLWTISITTSSRGQ 120

Query: 94  IYH--GYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSN 151
           I+H  GYRRL EQLVSDLWDIGE+SLG +R K++EFC  ++EN+VPCFN S +LALGYS+
Sbjct: 121 IFHSHGYRRLYEQLVSDLWDIGELSLGPARLKEVEFCPLEYENHVPCFNVSESLALGYSD 180

Query: 152 GDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMM 211
           G+E++R CG  ++Q+CL  PPV YRIPLRWPTGRD+IWV+NVKITAQEVLSSGSLTKRMM
Sbjct: 181 GEELNRRCGHGIRQNCLFPPPVNYRIPLRWPTGRDIIWVANVKITAQEVLSSGSLTKRMM 240

Query: 212 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL 271
           MLEEEQISFRSASL+FDGVEDYSHQIAEMIGLRNESNFI AGVRTILDIGCGYGSFGAHL
Sbjct: 241 MLEEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESNFIQAGVRTILDIGCGYGSFGAHL 300

Query: 272 FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331
           FSKE+LTMCIA+YEASGSQVQLTLERGLPAMIGSF SKQ+PYP LSFDM+HCARCG+DWD
Sbjct: 301 FSKEILTMCIASYEASGSQVQLTLERGLPAMIGSFTSKQMPYPYLSFDMVHCARCGIDWD 360

Query: 332 QK 333
           QK
Sbjct: 361 QK 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066969|ref|XP_002302304.1| predicted protein [Populus trichocarpa] gi|222844030|gb|EEE81577.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/362 (72%), Positives = 292/362 (80%), Gaps = 29/362 (8%)

Query: 1   MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALS----------- 49
           MSRPLLRG +G R+SGN +D WD +MK++ EKEDL+++ S+DQSYLAL            
Sbjct: 1   MSRPLLRGATGGRVSGNSNDLWDSQMKDKTEKEDLDRNRSSDQSYLALRFPFRVLFPENN 60

Query: 50  ------------------SGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSR 91
                              G+PRSR  + +L LK SL  IV LALTGSFWWTISI+T SR
Sbjct: 61  SPSKYGSGENGFASDPFIVGSPRSRHKWALLLLKLSLAVIVILALTGSFWWTISITTMSR 120

Query: 92  GHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSN 151
           G I H YRRLQEQLVSDLWDIGE+SLGSSR ++LEFCSE+ ENY PCFN S NLALGYS+
Sbjct: 121 GQILHNYRRLQEQLVSDLWDIGELSLGSSRLQELEFCSEESENYAPCFNVSENLALGYSD 180

Query: 152 GDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMM 211
           G E  R CGQ  +Q CLVLPPV YRIPLRWPTGRD+IWV+NVKITAQEVLSSGSLTKRMM
Sbjct: 181 GSENTRLCGQSSRQSCLVLPPVNYRIPLRWPTGRDIIWVANVKITAQEVLSSGSLTKRMM 240

Query: 212 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL 271
           ML+EEQISFRS S +FDGVEDYSHQIAEMIGLRNESNF+ AGVRTILDIGCGYGSFGAHL
Sbjct: 241 MLDEEQISFRSVSPMFDGVEDYSHQIAEMIGLRNESNFVQAGVRTILDIGCGYGSFGAHL 300

Query: 272 FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331
           FSK+L+T+CIANYE SGSQVQLTLERGLPAMIGSF S QLPYPSLSFDMLHCARCG+DWD
Sbjct: 301 FSKQLITICIANYEPSGSQVQLTLERGLPAMIGSFNSNQLPYPSLSFDMLHCARCGIDWD 360

Query: 332 QK 333
            K
Sbjct: 361 LK 362

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545748|ref|XP_002513934.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223547020|gb|EEF48517.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/368 (71%), Positives = 298/368 (80%), Gaps = 35/368 (9%)

Query: 1   MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLAL------------ 48
           MSRPL RG+SGMRISGN +D WD +MK++ EKE+LEK+ S+DQSYLAL            
Sbjct: 1   MSRPLHRGISGMRISGNSNDLWDSQMKDKPEKEELEKNRSSDQSYLALRFPFRVLFPDNV 60

Query: 49  -----------------SSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSR 91
                            S GTPRSR  FT+L LK SL+ I+ LALTGSFWWTISI+TSSR
Sbjct: 61  SPSKYGSTENGIASDPFSIGTPRSRHKFTLLLLKLSLVVILVLALTGSFWWTISITTSSR 120

Query: 92  GHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSN 151
           G I+H YRRLQEQLVSDLWDIGE+SLGSSR K++EFC + +ENYVPC+N S N+     +
Sbjct: 121 GQIFHNYRRLQEQLVSDLWDIGELSLGSSRLKEVEFCPQQYENYVPCYNVSENI-----D 175

Query: 152 GDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMM 211
           G+E DR+CG   +Q CL LPP  Y+IPLRWPTGRDVIWV+NVKITAQEVLSSGSLTKRMM
Sbjct: 176 GNENDRYCGLGSRQSCLALPPTNYKIPLRWPTGRDVIWVANVKITAQEVLSSGSLTKRMM 235

Query: 212 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL 271
           ML++EQISFRSAS+ FD VEDYSHQIAEMIGLRNESNFI AGVRTILDIGCGYGSFGAHL
Sbjct: 236 MLDQEQISFRSASM-FDSVEDYSHQIAEMIGLRNESNFIKAGVRTILDIGCGYGSFGAHL 294

Query: 272 FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331
           F ++LLTMCIANYEASGSQVQLTLERGLPAMIGSF SKQLP+PSLSFDMLHCARCG+DWD
Sbjct: 295 FQRQLLTMCIANYEASGSQVQLTLERGLPAMIGSFTSKQLPFPSLSFDMLHCARCGIDWD 354

Query: 332 QKGKCQKF 339
           QK   +++
Sbjct: 355 QKENLKRW 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515784|ref|XP_003526578.1| PREDICTED: probable pectin methyltransferase QUA2-like [Glycine max]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/360 (69%), Positives = 284/360 (78%), Gaps = 27/360 (7%)

Query: 1   MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHST-----------------DQ 43
           MSRPL RGVS      N +D WD + K+++EKE L++  S+                   
Sbjct: 1   MSRPLHRGVSIRIPDSNNNDLWDSQSKDKSEKEGLDRRGSSGHPSPLRSPFRLLFSDNSN 60

Query: 44  SYLALSS----------GTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGH 93
           S   +S           GTPRSR    +LFL+FSL+ IV LAL GSFWWTISIST+SRGH
Sbjct: 61  SKYGISENGFSSDPFIIGTPRSRLKLVLLFLRFSLVFIVILALAGSFWWTISISTASRGH 120

Query: 94  IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGD 153
           IYHGYRRLQE+LVSDL DIGEIS   SR K+LEFCSE+FENYVPCFN S NLALG+S+G+
Sbjct: 121 IYHGYRRLQEKLVSDLLDIGEISYAPSRLKELEFCSEEFENYVPCFNVSDNLALGFSDGN 180

Query: 154 EVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMML 213
           E DR C  EL+Q+CLVL P  Y+IPLRWPTGRD+IW++N KITAQEVLSSGS TKRMMML
Sbjct: 181 EFDRQCRHELRQNCLVLSPPNYKIPLRWPTGRDIIWIANTKITAQEVLSSGSFTKRMMML 240

Query: 214 EEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS 273
           +EEQISFRSASL+FDGVEDYSHQIAEMIGLRNES+FI AGVRTILDIGCGYGSFGAHLF 
Sbjct: 241 DEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESSFIQAGVRTILDIGCGYGSFGAHLFQ 300

Query: 274 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
            +LLTMCIA+YE SGSQVQLTLERGLPAM+ SF SKQLPYPSLSFDMLHCARCG+DWD+K
Sbjct: 301 SQLLTMCIASYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMLHCARCGIDWDRK 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508083|ref|XP_003522790.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 1 [Glycine max]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 250/360 (69%), Positives = 282/360 (78%), Gaps = 27/360 (7%)

Query: 1   MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEK-------------------DHST 41
           MSRPL RGVS      N +D WD + K++ EKE L++                   D+S 
Sbjct: 1   MSRPLHRGVSIRIPDSNNNDLWDSQSKDKTEKEGLDRRGSFGHPSPLRSPFKLLFSDNSN 60

Query: 42  DQSYLALSS--------GTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGH 93
            +  +  +         GTPRSR    +LFLKFSL+ IV LAL GSFWWTISIST+SRGH
Sbjct: 61  SKYGIGENGFSSDPFIIGTPRSRHKLVLLFLKFSLVFIVILALAGSFWWTISISTASRGH 120

Query: 94  IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGD 153
           IYHGYRRLQE LVSDL DIGEIS   SR K+LEFCSE+FENYVPCFN S NLALG+S+G+
Sbjct: 121 IYHGYRRLQENLVSDLLDIGEISYAPSRLKELEFCSEEFENYVPCFNVSDNLALGFSDGN 180

Query: 154 EVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMML 213
           E DR C  EL+ +CLVL P  Y+IPLRWPTGRD+IW++N KITAQEVLSSGS TKRMMML
Sbjct: 181 EFDRQCHHELRPNCLVLSPPNYKIPLRWPTGRDIIWIANAKITAQEVLSSGSFTKRMMML 240

Query: 214 EEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS 273
           +EEQISFRSASL+FDGVEDYSHQIAEMIGLRNES+FI AGVRTILDIGCGYGSFGAHLF 
Sbjct: 241 DEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESSFIQAGVRTILDIGCGYGSFGAHLFQ 300

Query: 274 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
            +LLTMCIA+YE SGSQVQLTLERGLPAM+ SF SKQLPYPSLSFDMLHCARCG+DWD+K
Sbjct: 301 SQLLTMCIASYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMLHCARCGIDWDRK 360

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508085|ref|XP_003522791.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 2 [Glycine max]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/371 (68%), Positives = 287/371 (77%), Gaps = 29/371 (7%)

Query: 1   MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEK-------------------DHST 41
           MSRPL RGVS      N +D WD + K++ EKE L++                   D+S 
Sbjct: 1   MSRPLHRGVSIRIPDSNNNDLWDSQSKDKTEKEGLDRRGSFGHPSPLRSPFKLLFSDNSN 60

Query: 42  DQSYLALSS--------GTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGH 93
            +  +  +         GTPRSR    +LFLKFSL+ IV LAL GSFWWTISIST+SRGH
Sbjct: 61  SKYGIGENGFSSDPFIIGTPRSRHKLVLLFLKFSLVFIVILALAGSFWWTISISTASRGH 120

Query: 94  IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGD 153
           IYHGYRRLQE LVSDL DIGEIS   SR K+LEFCSE+FENYVPCFN S NLALG+S+G+
Sbjct: 121 IYHGYRRLQENLVSDLLDIGEISYAPSRLKELEFCSEEFENYVPCFNVSDNLALGFSDGN 180

Query: 154 EVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMML 213
           E DR C  EL+ +CLVL P  Y+IPLRWPTGRD+IW++N KITAQEVLSSGS TKRMMML
Sbjct: 181 EFDRQCHHELRPNCLVLSPPNYKIPLRWPTGRDIIWIANAKITAQEVLSSGSFTKRMMML 240

Query: 214 EEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS 273
           +EEQISFRSASL+FDGVEDYSHQIAEMIGLRNES+FI AGVRTILDIGCGYGSFGAHLF 
Sbjct: 241 DEEQISFRSASLMFDGVEDYSHQIAEMIGLRNESSFIQAGVRTILDIGCGYGSFGAHLFQ 300

Query: 274 KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
            +LLTMCIA+YE SGSQVQLTLERGLPAM+ SF SKQLPYPSLSFDMLHCARCG+DWD+K
Sbjct: 301 SQLLTMCIASYEPSGSQVQLTLERGLPAMVASFTSKQLPYPSLSFDMLHCARCGIDWDRK 360

Query: 334 G--KCQKFLGS 342
              K  KF+ S
Sbjct: 361 DSQKRWKFIQS 371

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437010|ref|XP_004136285.1| PREDICTED: probable pectin methyltransferase QUA2-like [Cucumis sativus] gi|449496983|ref|XP_004160281.1| PREDICTED: probable pectin methyltransferase QUA2-like [Cucumis sativus]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/362 (67%), Positives = 276/362 (76%), Gaps = 35/362 (9%)

Query: 1   MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQS---------YLALSSG 51
           MSRPL RG SG+++ G+G D WD +MK++ +KE++++  S D            L L   
Sbjct: 1   MSRPLHRGASGVKVHGHGDDKWDSQMKDKTDKEEVDRKGSLDHGGNLAPRLPFRLLLPDN 60

Query: 52  TP--------------------RSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSR 91
           +P                    RSRQ F +  L+FSL+ I+ LALTGSFWWT+SIS SS+
Sbjct: 61  SPSKYGGTENGFASDSFLVGNSRSRQQFILQMLRFSLVLIIILALTGSFWWTLSISGSSQ 120

Query: 92  GHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSN 151
             I+HGYRRLQEQLVSDLWDIGEISLG SR K+LEFC  +FENYVPCFN S       S 
Sbjct: 121 VQIFHGYRRLQEQLVSDLWDIGEISLGPSRLKELEFCLPEFENYVPCFNSS------LSQ 174

Query: 152 GDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMM 211
            DE DRHC      +CL+ PP+KY+IPLRWPTGRDVIWVSNVKITA EVL SGSLTKRMM
Sbjct: 175 EDEYDRHCEPNSSLNCLIQPPLKYKIPLRWPTGRDVIWVSNVKITANEVLYSGSLTKRMM 234

Query: 212 MLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHL 271
           MLEEEQISFRSAS +FDGVEDYSHQIAEMIGLRNESNF   GVRTILDIGCGYGSFGAHL
Sbjct: 235 MLEEEQISFRSASPMFDGVEDYSHQIAEMIGLRNESNFREIGVRTILDIGCGYGSFGAHL 294

Query: 272 FSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331
           FSK LLTMCIANYEASGSQVQLTLERGLPAM+GSF SKQLP+PSLS+DM+HCARCGVDWD
Sbjct: 295 FSKHLLTMCIANYEASGSQVQLTLERGLPAMLGSFTSKQLPFPSLSYDMVHCARCGVDWD 354

Query: 332 QK 333
            K
Sbjct: 355 NK 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842599|ref|XP_002889181.1| hypothetical protein ARALYDRAFT_895718 [Arabidopsis lyrata subsp. lyrata] gi|297335022|gb|EFH65440.1| hypothetical protein ARALYDRAFT_895718 [Arabidopsis lyrata subsp. lyrata]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/353 (68%), Positives = 280/353 (79%), Gaps = 21/353 (5%)

Query: 1   MSRPLLRGVSGMRISGNGHDPWDLEMKERNEKEDLEKDH----------STDQSYLALSS 50
           MS PL RG+SG+R+S +  D  D +MK++ E+     +H           T+QS      
Sbjct: 1   MSMPLQRGISGVRVSDSSDDLSDSQMKDKTERPRSSDNHLTLRFPFGFLFTNQSSSKHGG 60

Query: 51  G----------TPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYRR 100
           G          + RSR    ++FLK SL+ IV +AL GSFWWTISISTSSRGH+YH YRR
Sbjct: 61  GGENGFSADPYSARSRHRLMLMFLKISLVLIVVIALAGSFWWTISISTSSRGHVYHNYRR 120

Query: 101 LQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCG 160
           LQEQLVSDLWDIGEISLG +R K+LE+C+ + EN+VPCFN S NLALGYSNGDE DR CG
Sbjct: 121 LQEQLVSDLWDIGEISLGPNRWKELEYCNIESENFVPCFNVSENLALGYSNGDENDRFCG 180

Query: 161 QELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISF 220
              KQ CLVLPPVKYR+PLRWPTG+D+IW SNVKITAQEV+SSGS+TKRMMM+E++QISF
Sbjct: 181 PGSKQECLVLPPVKYRVPLRWPTGKDIIWYSNVKITAQEVVSSGSITKRMMMMEDDQISF 240

Query: 221 RSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMC 280
           RSAS + D VEDYSHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGAHL SK++LTMC
Sbjct: 241 RSASPMSDEVEDYSHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGAHLLSKQILTMC 299

Query: 281 IANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
           IANYEASGSQVQLTLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+DWDQK
Sbjct: 300 IANYEASGSQVQLTLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDWDQK 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552892|ref|XP_003544796.1| PREDICTED: probable pectin methyltransferase QUA2-like isoform 2 [Glycine max]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/370 (68%), Positives = 289/370 (78%), Gaps = 31/370 (8%)

Query: 1   MSRPLLRGV-SGMRISGNGHDPWDLEMKERNEKEDLEKDHSTDQSYLALS---------- 49
           MSRPL RGV  G+R+   G+D WD + K++ EKEDL+K  S D S  AL           
Sbjct: 1   MSRPLQRGVLGGVRVPERGYDLWDSQSKDKIEKEDLDKRGSADHSPFALRFPLRVLLGNN 60

Query: 50  --------------------SGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTS 89
                                GTPRS     +L LKFSL+ IV LALTGSFWWT+SIS+S
Sbjct: 61  SESKYGNVKAENGFASDPFMVGTPRSLLKLMLLSLKFSLVFIVVLALTGSFWWTLSISSS 120

Query: 90  SRGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGY 149
           SRGHIYHGYRRLQE+LVSDL DIGE S G  R K+ EFCSE+FEN+VPC+N S N+ LG 
Sbjct: 121 SRGHIYHGYRRLQEKLVSDLLDIGEFSRGPLRLKESEFCSEEFENFVPCYNVSENVELGV 180

Query: 150 SNGDEVDRHCGQELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKR 209
           S+G+EVDR CG+EL+Q+CLVLPPV Y+IPLRWPTG+DVIWV+NVKI+AQEVLSSGSLTKR
Sbjct: 181 SDGNEVDRQCGRELRQNCLVLPPVNYKIPLRWPTGKDVIWVANVKISAQEVLSSGSLTKR 240

Query: 210 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGA 269
           MMML+EEQISFRSAS +FDG+EDYSHQIAEMIGLRNES  I AGVRTILDIGCGYGSFGA
Sbjct: 241 MMMLDEEQISFRSASHMFDGIEDYSHQIAEMIGLRNESYLIQAGVRTILDIGCGYGSFGA 300

Query: 270 HLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329
           HLF  +LLTMCIANYE SGSQVQLTLERGLPAMI SF SKQLPYPSLSFDMLHCARCG+D
Sbjct: 301 HLFDSQLLTMCIANYEPSGSQVQLTLERGLPAMIASFTSKQLPYPSLSFDMLHCARCGID 360

Query: 330 WDQKGKCQKF 339
           WDQK   +++
Sbjct: 361 WDQKENQKRW 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2032130	684	TSD2 "TUMOROUS SHOOT DEVELOPME	0.811	0.407	0.760	3.2e-121
TAIR|locus:2063798	606	QUL2 "QUASIMODO2 LIKE 2" [Arab	0.790	0.448	0.557	2.6e-79
TAIR|locus:2014789	603	QUL1 "QUASIMODO2 LIKE 1" [Arab	0.758	0.432	0.527	3.6e-73
TAIR|locus:2150670	600	AT5G04060 [Arabidopsis thalian	0.578	0.331	0.399	2.8e-35
TAIR|locus:2018329	623	AT1G04430 [Arabidopsis thalian	0.607	0.335	0.348	5.9e-35
TAIR|locus:2145658	612	AT5G14430 [Arabidopsis thalian	0.630	0.354	0.340	1.5e-34
TAIR|locus:2090935	611	AT3G23300 [Arabidopsis thalian	0.584	0.328	0.355	1.2e-33
TAIR|locus:2041031	611	AT2G43200 [Arabidopsis thalian	0.595	0.335	0.397	1.2e-33
TAIR|locus:2076264	591	AT3G10200 [Arabidopsis thalian	0.581	0.338	0.383	2.6e-33
TAIR|locus:2129660	608	AT4G14360 [Arabidopsis thalian	0.581	0.328	0.353	4e-33

TAIR|locus:2032130 TSD2 "TUMOROUS SHOOT DEVELOPMENT 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1133 (403.9 bits), Expect = 3.2e-121, Sum P(2) = 3.2e-121
 Identities = 213/280 (76%), Positives = 238/280 (85%)

Query:    54 RSRQNFTMLFLKFSLIAIVFLALTGSFXXXXXXXXXXRGHIYHGYRRLQEQLVSDLWDIG 113
             RSR    +LFLK SL+ IV +AL GSF          RGH+YH YRRLQEQLVSDLWDIG
Sbjct:    75 RSRHRLMLLFLKISLVLIVVIALAGSFWWTISISTSSRGHVYHNYRRLQEQLVSDLWDIG 134

Query:   114 EISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQELKQHCLVLPPV 173
             EISLG +R K+LE+C+ + EN+VPCFN S NLALGYSNGDE DR CG   KQ CL LPPV
Sbjct:   135 EISLGPNRWKELEYCNIESENFVPCFNVSENLALGYSNGDENDRFCGPGSKQECLELPPV 194

Query:   174 KYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFDGVEDY 233
             KYR+PLRWPTG+D+IW SNVKITAQEV+SSGS+TKRMMM+E++QISFRSAS + D VEDY
Sbjct:   195 KYRVPLRWPTGKDIIWHSNVKITAQEVVSSGSITKRMMMMEDDQISFRSASPMSDEVEDY 254

Query:   234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293
             SHQIAEMIG++ + NFI AGVRTILDIGCGYGSFGAHL SK++LTMCIANYEASGSQVQL
Sbjct:   255 SHQIAEMIGIKKD-NFIEAGVRTILDIGCGYGSFGAHLLSKQILTMCIANYEASGSQVQL 313

Query:   294 TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
             TLERGLPAMIGSF SKQLPYPSLSFDMLHC RCG+DWDQK
Sbjct:   314 TLERGLPAMIGSFISKQLPYPSLSFDMLHCLRCGIDWDQK 353

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA;IMP

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0010289 "homogalacturonan biosynthetic process" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2063798 QUL2 "QUASIMODO2 LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 154/276 (55%), Positives = 198/276 (71%)

Query:    61 MLFLKFSLIAIV-FLALTGSFXXXXXXXXXXRGHIYHGYRRLQEQLVSDLWDIGEISLGS 119
             +LF    ++A+V  LA   S             +IY  YRR++EQ   D  D+  +SLG+
Sbjct:    22 LLFFIVGVVALVTILAPLTSNSYDSSSSSTLVPNIYSNYRRIKEQAAVDYLDLRSLSLGA 81

Query:   120 SRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQEL-KQHCLVLPPVKYRIP 178
             S  K+  FC ++ E+YVPC+N + NL  G   G+E+DRHC  E  K+ C+V PP  Y+IP
Sbjct:    82 SL-KEFPFCGKERESYVPCYNITGNLLAGLQEGEELDRHCEFEREKERCVVRPPRDYKIP 140

Query:   179 LRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSAS-LIFDGVEDYSHQI 237
             LRWP GRD+IW  NVKIT  + LSSG++T R+M+LEE QI+F S   L+FDGV+DY+ QI
Sbjct:   141 LRWPLGRDIIWSGNVKITKDQFLSSGTVTTRLMLLEENQITFHSEDGLVFDGVKDYARQI 200

Query:   238 AEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297
             AEMIGL +++ F  AGVRT+LDIGCG+GSFGAHL S +L+ +CIA YEA+GSQVQL LER
Sbjct:   201 AEMIGLGSDTEFAQAGVRTVLDIGCGFGSFGAHLVSLKLMPICIAEYEATGSQVQLALER 260

Query:   298 GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
             GLPAMIG+F SKQLPYP+LSFDM+HCA+CG  WD K
Sbjct:   261 GLPAMIGNFFSKQLPYPALSFDMVHCAQCGTTWDIK 296

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2014789 QUL1 "QUASIMODO2 LIKE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 146/277 (52%), Positives = 191/277 (68%)

Query:    61 MLFLKFSLIAIVFLALTGSFXXXXXXXXXXR-GHIYHGYRRLQEQLVSDLWDIGEISLGS 119
             +LFL   +IA++ + +  S              +IY  Y R++EQ   D  D+   SLG 
Sbjct:    16 LLFLTLGVIALITILVPNSDSSSTTSTTRVPPSNIYSNYGRVKEQAAVDYLDLRFFSLGV 75

Query:   120 SRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC--GQELKQHCLVLPPVKYRI 177
             +R K+   C ++ +NYVPC+N +           E DR+C   +E ++ CLV PP  Y+I
Sbjct:    76 NRLKEFPLCGKERDNYVPCYNVT-----------ESDRNCEFARE-EERCLVRPPRDYKI 123

Query:   178 PLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSAS-LIFDGVEDYSHQ 236
             PLRWP GRD+IW  NVKIT  + LSSG++TKR+M+LEE QI+F S   LIFDGV+DY+ Q
Sbjct:   124 PLRWPVGRDIIWTGNVKITKDQFLSSGTMTKRLMLLEENQITFHSDDGLIFDGVKDYAFQ 183

Query:   237 IAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296
             IAEMIGL +++ F  AG+RT+LDIGCG+GSFGAHL S  ++ +CIA YE SGSQVQL LE
Sbjct:   184 IAEMIGLGSDTEFPQAGIRTVLDIGCGFGSFGAHLVSLNVMPICIAEYETSGSQVQLALE 243

Query:   297 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
             RGLPAMIG+F SKQLPYP+LSFDM+HCA+CG+ WD K
Sbjct:   244 RGLPAMIGNFFSKQLPYPALSFDMVHCAQCGITWDIK 280

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2150670 AT5G04060 [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 2.8e-35, P = 2.8e-35
 Identities = 85/213 (39%), Positives = 121/213 (56%)

Query:   128 CSEDFENYVPCFNES--RNL--ALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWP 182
             C   F  Y+PC N +  + L  +L  S  +E++RHC   E +  CLV PP  Y+IP+RWP
Sbjct:    86 CPLKFNEYIPCHNVTYVQQLLPSLNLSRREELERHCPPLEQRLFCLVPPPKDYKIPIRWP 145

Query:   183 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS-FRSASLIFD-GVEDYSHQIAEM 240
             T RD +W SNV  T    +  G    +  + E+ Q+  F      F  G  +Y  ++  M
Sbjct:   146 TSRDYVWRSNVNHTHLAEVKGG----QNWVHEQGQLWWFPGGGTHFKHGAPEYIQRLGNM 201

Query:   241 IGLRNESNFIL-AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL 299
                 NE+  +L AGV  +LD+GCG  SF A+L    + TM  A  +   +Q+Q  LERG+
Sbjct:   202 T--TNETGDLLSAGVEQVLDVGCGVASFAAYLLPLGIKTMSFAPKDGHENQIQFALERGI 259

Query:   300 PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332
              AMI + A+KQ+PYP+ SFDM+HC+RC VDW +
Sbjct:   260 RAMISAIATKQMPYPAASFDMVHCSRCRVDWHE 292

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 5.9e-35, P = 5.9e-35
 Identities = 76/218 (34%), Positives = 121/218 (55%)

Query:   122 SKDLEFCSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYR 176
             +K    C +     +PC + +      L L  S  +  +RHC   E + +CL+ PP  Y+
Sbjct:    81 AKSFPVCDDRHSEIIPCLDRNFIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPSGYK 140

Query:   177 IPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSH 235
             +P++WP  RD +W +N+  T    L+     +  M+ + E+ISF      F  G + Y  
Sbjct:   141 VPIKWPKSRDEVWKANIPHTH---LAKEKSDQNWMVEKGEKISFPGGGTHFHYGADKYIA 197

Query:   236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295
              IA M+   N+       +RT+LD+GCG  SFGA+L + +++TM +A  +   +Q+Q  L
Sbjct:   198 SIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSLAPNDVHQNQIQFAL 257

Query:   296 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
             ERG+PA +G   +K+LPYPS SF+  HC+RC +DW Q+
Sbjct:   258 ERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQR 295

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2145658 AT5G14430 [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 1.5e-34, P = 1.5e-34
 Identities = 78/229 (34%), Positives = 126/229 (55%)

Query:   114 EISLGSSR---SKDLEFCSEDFENYVPCFNESRN----LALGYSNGDEVDRHCG-QELKQ 165
             +I L  SR    K +  C       +PC + + +    L L  S  +  + HC   E + 
Sbjct:    66 DIVLAVSRFEVPKSVPICDSRHSELIPCLDRNLHYQLKLKLNLSLMEHYEHHCPPSERRF 125

Query:   166 HCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASL 225
             +CLV PPV Y+IPLRWP  RD +W +N+  T    L+     +  M++  ++I+F     
Sbjct:   126 NCLVPPPVGYKIPLRWPVSRDEVWKANIPHTH---LAQEKSDQNWMVVNGDKINFPGGGT 182

Query:   226 IF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANY 284
              F +G + Y   +A+M+    +       +R +LD+GCG  SFGA+L S +++ M +A  
Sbjct:   183 HFHNGADKYIVSLAQMLKFPGDKLNNGGSIRNVLDVGCGVASFGAYLLSHDIIAMSLAPN 242

Query:   285 EASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
             +   +Q+Q  LERG+P+ +G   +K+LPYPS SF++ HC+RC +DW Q+
Sbjct:   243 DVHQNQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 291

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2090935 AT3G23300 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 76/214 (35%), Positives = 120/214 (56%)

Query:   128 CSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWP 182
             C +     +PC + +      L L  S  +  +RHC   E + +CL+ PP  Y+IP++WP
Sbjct:    82 CDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPPGYKIPIKWP 141

Query:   183 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQIAEMI 241
               RD +W  N+  T    L+     +  M+++ E+I+F      F  G + Y   +A M+
Sbjct:   142 KSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGEKINFPGGGTHFHYGADKYIASMANML 198

Query:   242 GLRNESNFILAG--VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL 299
                N  N +  G  +RT LD+GCG  SFG +L + E++TM +A  +   +Q+Q  LERG+
Sbjct:   199 NFPN--NVLNNGGRLRTFLDVGCGVASFGGYLLASEIMTMSLAPNDVHQNQIQFALERGI 256

Query:   300 PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
             PA +G   +K+LPYPS SF++ HC+RC +DW Q+
Sbjct:   257 PAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 290

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 87/219 (39%), Positives = 115/219 (52%)

Query:   116 SLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHC---GQELKQHCLVLPP 172
             S  SS S     C ++F NY+PC + S             +RHC    QE K  CLV  P
Sbjct:    82 SSSSSLSSYFPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQE-KFRCLVPKP 140

Query:   173 VKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFDG-VE 231
               Y+ P  WP  R   W  NV       L     T+  + LE ++  F      F G V+
Sbjct:   141 TGYKTPFPWPESRKYAWFRNVPFKRLAELKK---TQNWVRLEGDRFVFPGGGTSFPGGVK 197

Query:   232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV 291
             DY   I  ++ L + S      +RT+LDIGCG  SFGA L + ++LTM IA  +   +QV
Sbjct:   198 DYVDVILSVLPLASGS------IRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQV 251

Query:   292 QLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330
             Q  LERGLPAM+G  ++ +LPYPS SFDM+HC+RC V+W
Sbjct:   252 QFALERGLPAMLGVLSTYKLPYPSRSFDMVHCSRCLVNW 290

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2076264 AT3G10200 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 2.6e-33, P = 2.6e-33
 Identities = 82/214 (38%), Positives = 120/214 (56%)

Query:   125 LEFCSEDFENYVPCFNES--RNL--ALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPL 179
             +  C  +F  Y+PC N +    L  +L  S  ++++RHC   E +  CLV PP  Y+IP+
Sbjct:    72 MNVCPLEFNEYIPCHNVTYVHQLLPSLNLSRREDLERHCPPLEHRLFCLVPPPNDYKIPI 131

Query:   180 RWPTGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQIS-FRSASLIFD-GVEDYSHQI 237
             RWPT RD +W SNV  T    +  G    +  + E+ Q   F      F  G  +Y  ++
Sbjct:   132 RWPTSRDYVWRSNVNHTHLAQVKGG----QNWVHEQGQFWWFPGGGTHFKHGAAEYIQRL 187

Query:   238 AEMIGLRNESNFIL-AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296
               M  + NE+  +  AGV  +LD+GCG  SF A+L    + T+  A  +   +Q+Q  LE
Sbjct:   188 GNM--MTNETGDLRSAGVVQVLDVGCGVASFAAYLLPLGIQTISFAPKDGHENQIQFALE 245

Query:   297 RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330
             RG+ AMI + A+KQLPYP+ SF+M+HC+RC VDW
Sbjct:   246 RGIGAMISAVATKQLPYPAASFEMVHCSRCRVDW 279

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

TAIR|locus:2129660 AT4G14360 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 4.0e-33, P = 4.0e-33
 Identities = 76/215 (35%), Positives = 121/215 (56%)

Query:   128 CSEDFENYVPCFNES----RNLALGYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWP 182
             C +     +PC + +      L L  S  +  +RHC   E + +CL+ PP  Y++P++WP
Sbjct:    79 CDDRHSELIPCLDRNLIYQMRLKLDLSLMEHYERHCPPPERRFNCLIPPPNGYKVPIKWP 138

Query:   183 TGRDVIWVSNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQIAEMI 241
               RD +W  N+  T    L+     +  M+++ ++I+F      F  G + Y   IA M 
Sbjct:   139 KSRDEVWKVNIPHTH---LAHEKSDQNWMVVKGDKINFPGGGTHFHYGADKY---IASMA 192

Query:   242 GLRNESNFIL--AG-VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298
              + N  N +L   G +RT+ D+GCG  SFG +L S ++LTM +A  +   +Q+Q  LERG
Sbjct:   193 NMLNYPNNVLNNGGRLRTVFDVGCGVASFGGYLLSSDILTMSLAPNDVHQNQIQFALERG 252

Query:   299 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333
             +PA +G   +K+LPYPS SF++ HC+RC +DW Q+
Sbjct:   253 IPASLGVLGTKRLPYPSRSFELSHCSRCRIDWLQR 287

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	344
pfam03141	506	pfam03141, Methyltransf_29, Putative S-adenosyl-L-	7e-54
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	0.004

>gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase

 Score =  184 bits (468), Expect = 7e-54
 Identities = 78/208 (37%), Positives = 109/208 (52%), Gaps = 17/208 (8%)

Query: 134 NYVPCF--NESRNLALGYSNGDEVDRHC-GQELKQHCLVLPPVKYRIPLRWPTGRDVIWV 190
           +Y+PC   + +    L     +  +RHC   E K  CLV PP  Y+ P+ WP  RD +W 
Sbjct: 1   DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60

Query: 191 SNVKITAQEVLSSGSLTKRMMMLEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNF 249
           +NV  T       G   +  + +E ++  F      F  G + Y   +A+MI        
Sbjct: 61  ANVPHTKLAEEKGG---QNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWG-- 115

Query: 250 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIA---NYEASGSQVQLTLERGLPAMIGSF 306
               VRT LD+GCG  SFGA+L S+++LTM  A    +EA   QVQ  LERG+PAM+G  
Sbjct: 116 --GRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEA---QVQFALERGVPAMLGVL 170

Query: 307 ASKQLPYPSLSFDMLHCARCGVDWDQKG 334
            +++LPYPS SFDM HC+RC + W    
Sbjct: 171 GTRRLPYPSRSFDMAHCSRCLIPWHAND 198

This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 22/96 (22%)

Query: 257 ILDIGCGYGSFGAHL------------FSKELLTMCIANYEASGSQVQLTLERGLPAMIG 304
           ILD+GCG G     L             SKE L +        G +V+         ++ 
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVR--------FVVA 52

Query: 305 SFASKQLPYPSLSFDMLHCARCGVDWDQKGKCQKFL 340
               + LP+   SFD++ CA   +D+    + +  L
Sbjct: 53  DA--RDLPFEEGSFDLVICAGLSLDYLSPKQLRALL 86

This family appears to be a methyltransferase domain. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.42
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.34
PRK05785	226	hypothetical protein; Provisional	99.3
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.16
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.15
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.12
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.01
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.0
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.94
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.88
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.87
PLN02244	340	tocopherol O-methyltransferase	98.86
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.86
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.84
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.77
PRK08317	241	hypothetical protein; Provisional	98.76
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.75
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.75
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.73
PRK06202	232	hypothetical protein; Provisional	98.72
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.68
PRK11207	197	tellurite resistance protein TehB; Provisional	98.67
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.65
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.65
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.64
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.64
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.6
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.6
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.6
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.59
PLN02336	475	phosphoethanolamine N-methyltransferase	98.59
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.55
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.55
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.55
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.5
PLN02336	475	phosphoethanolamine N-methyltransferase	98.49
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.44
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.44
PRK12335	287	tellurite resistance protein TehB; Provisional	98.43
PLN02490	340	MPBQ/MSBQ methyltransferase	98.4
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.39
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.38
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.33
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.33
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.31
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.31
PRK06922	677	hypothetical protein; Provisional	98.3
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.3
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.27
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.25
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.24
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.21
KOG3010	261	consensus Methyltransferase [General function pred	98.21
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.18
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.18
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.17
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.17
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.16
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.14
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.13
KOG2940	325	consensus Predicted methyltransferase [General fun	98.12
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.1
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.06
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.04
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.04
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.03
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.0
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.98
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.98
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.97
PRK14967	223	putative methyltransferase; Provisional	97.97
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.96
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.95
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.94
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.93
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.91
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.9
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.9
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.89
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.85
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.84
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.83
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.82
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	97.81
PLN03075	296	nicotianamine synthase; Provisional	97.77
TIGR03438	301	probable methyltransferase. This model represents	97.76
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.76
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.75
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.75
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.74
PHA03411	279	putative methyltransferase; Provisional	97.71
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.71
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.7
PRK14968	188	putative methyltransferase; Provisional	97.69
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.67
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.66
PHA03412	241	putative methyltransferase; Provisional	97.65
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.65
PRK04266	226	fibrillarin; Provisional	97.65
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.62
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.6
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.59
PRK04148	134	hypothetical protein; Provisional	97.58
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.57
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.56
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.56
KOG4300	252	consensus Predicted methyltransferase [General fun	97.51
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.51
COG4123	248	Predicted O-methyltransferase [General function pr	97.48
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.46
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.44
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.37
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.36
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.35
TIGR00438	188	rrmJ cell division protein FtsJ.	97.34
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.31
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.31
PTZ00146	293	fibrillarin; Provisional	97.29
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.28
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.27
PRK00811	283	spermidine synthase; Provisional	97.25
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.24
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.23
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.22
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.21
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.18
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.17
KOG1271	227	consensus Methyltransferases [General function pre	97.16
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.07
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.07
COG2890	280	HemK Methylase of polypeptide chain release factor	97.02
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.02
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.99
PRK04457	262	spermidine synthase; Provisional	96.98
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	96.95
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.92
PRK07402	196	precorrin-6B methylase; Provisional	96.92
PRK01581	374	speE spermidine synthase; Validated	96.88
PLN02366	308	spermidine synthase	96.81
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	96.69
PRK03612	521	spermidine synthase; Provisional	96.5
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	96.47
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	96.44
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	96.39
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.38
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.37
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.36
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.25
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.22
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.1
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	96.05
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	95.98
KOG2361	264	consensus Predicted methyltransferase [General fun	95.96
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	95.95
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	95.91
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	95.72
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	95.72
KOG2904	328	consensus Predicted methyltransferase [General fun	95.7
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	95.67
PLN02672	1082	methionine S-methyltransferase	95.28
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	95.28
COG2265	432	TrmA SAM-dependent methyltransferases related to t	95.25
KOG1331	293	consensus Predicted methyltransferase [General fun	95.2
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.19
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	95.14
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	95.1
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	95.07
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	94.96
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	94.96
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	94.94
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	94.79
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	94.78
COG1041	347	Predicted DNA modification methylase [DNA replicat	94.77
PF13679	141	Methyltransf_32: Methyltransferase domain	94.52
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	94.4
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	94.31
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	94.28
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	94.27
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	94.27
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	94.25
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	94.1
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	93.85
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	92.92
PLN02476	278	O-methyltransferase	92.9
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	92.83
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	92.41
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	92.36
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	92.33
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	92.26
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	92.21
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	92.18
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	92.15
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	91.81
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	91.81
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	91.75
PLN02823	336	spermine synthase	91.62
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	91.57
PLN02668	386	indole-3-acetate carboxyl methyltransferase	91.29
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	90.55
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	89.85
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	89.83
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	87.9
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	87.82
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	87.59
COG4122	219	Predicted O-methyltransferase [General function pr	87.49
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	85.88
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	85.49
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	83.62
PLN02589	247	caffeoyl-CoA O-methyltransferase	83.59
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	82.7
KOG2899	288	consensus Predicted methyltransferase [General fun	82.18
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	81.83
COG2521	287	Predicted archaeal methyltransferase [General func	81.55

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=100.00  E-value=2.4e-65  Score=515.99  Aligned_cols=197  Identities=40%  Similarity=0.805  Sum_probs=187.4

Q ss_pred             CcccCcCchhhhhc--CCCCcceeccCCCC-CCCcccccCCCCCCCCCCCCCCccchhcccCCCchhHHhhhcccccccc
Q 019228          134 NYVPCFNESRNLAL--GYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM  210 (344)
Q Consensus       134 ~y~PC~d~~~~~~~--~~~~~~~~eRhCpp-~~r~~Clvp~P~~Y~~P~pWP~Srd~iW~~Nv~~~~~~~l~~~k~~q~W  210 (344)
                      |||||+|+++++++  ++++++|||||||+ +++++||||+|++||.|||||+|||+|||+||||++   |.++|..|||
T Consensus         1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~---L~~~K~~qnW   77 (506)
T PF03141_consen    1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTK---LAEEKADQNW   77 (506)
T ss_pred             CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchH---Hhhhcccccc
Confidence            79999999999998  99999999999999 889999999999999999999999999999999998   5678899999


Q ss_pred             cccccceeeecCCCccc-cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHH
Q 019228          211 MMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS  289 (344)
Q Consensus       211 ~~~eg~~~~FpGggt~F-~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea  289 (344)
                      |.++|++|+|||||||| +|+++|||+|.++++...    ..+++|++||||||+|+||++|++++|++|++++.|.+++
T Consensus        78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~----~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~  153 (506)
T PF03141_consen   78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK----WGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA  153 (506)
T ss_pred             eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccc----cCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence            99999999999999999 899999999999999721    1247899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCcccccc
Q 019228          290 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKGKCQ  337 (344)
Q Consensus       290 ~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~~g~~  337 (344)
                      |+|+|+|||+|++++++.+++||||+++||+|||++|+++|++++|+-
T Consensus       154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~  201 (506)
T PF03141_consen  154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFL  201 (506)
T ss_pred             hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccce
Confidence            999999999999999998999999999999999999999999999963

; GO: 0008168 methyltransferase activity

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.42  E-value=7.2e-14  Score=131.78  Aligned_cols=106  Identities=19%  Similarity=0.221  Sum_probs=84.4

Q ss_pred             cccchhhHHHHHHHHhccccCcccccCC--------CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc
Q 019228          226 IFDGVEDYSHQIAEMIGLRNESNFILAG--------VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER  297 (344)
Q Consensus       226 ~F~g~~~yId~I~e~Lpl~~g~~w~~~~--------ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR  297 (344)
                      +|+.+...+|+++.+++++.+..|++..        ..+|||||||||.++..+++..- ...+.+.|+++.|++.|++|
T Consensus        16 vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k   94 (238)
T COG2226          16 VFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREK   94 (238)
T ss_pred             HHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHH
Confidence            5777888899999999988888887642        24899999999999999988732 34677789999999999988


Q ss_pred             CCC-----eEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          298 GLP-----AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       298 Gvp-----a~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      -..     +.+-..|+++|||||+|||+|+|+..|.+-.+
T Consensus        95 ~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d  134 (238)
T COG2226          95 LKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD  134 (238)
T ss_pred             hhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC
Confidence            433     22333468999999999999999998865553

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.34  E-value=7e-13  Score=123.84  Aligned_cols=108  Identities=17%  Similarity=0.319  Sum_probs=51.3

Q ss_pred             ccccchhhHHHHHHHHhccccCcccccCC--------CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228          225 LIFDGVEDYSHQIAEMIGLRNESNFILAG--------VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE  296 (344)
Q Consensus       225 t~F~g~~~yId~I~e~Lpl~~g~~w~~~~--------ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e  296 (344)
                      .||+.+...+|.++.+++++.+..|++..        ..+|||+|||||.++..|+++--....+.+.|+++.|++.|++
T Consensus        11 ~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~   90 (233)
T PF01209_consen   11 KMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARK   90 (233)
T ss_dssp             --------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHH
T ss_pred             HHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHH
Confidence            47888899999999999988887787631        2489999999999999888752112256668899999988887


Q ss_pred             c----CC-CeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          297 R----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       297 R----Gv-pa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      +    +. .+.+-..|++.|||+|++||+|+|+..+.+..+
T Consensus        91 k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d  131 (233)
T PF01209_consen   91 KLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD  131 (233)
T ss_dssp             HHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SS
T ss_pred             HHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC
Confidence            6    22 333444568899999999999999988865543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK05785 hypothetical protein; Provisional

Probab=99.30  E-value=3.4e-12  Score=118.01  Aligned_cols=101  Identities=14%  Similarity=0.291  Sum_probs=72.2

Q ss_pred             cccchhhHHHHHHHHhccccCccccc----------CCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH
Q 019228          226 IFDGVEDYSHQIAEMIGLRNESNFIL----------AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL  295 (344)
Q Consensus       226 ~F~g~~~yId~I~e~Lpl~~g~~w~~----------~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~  295 (344)
                      +|+.+...+|.++..++++.+..|.+          ....+|||||||||.++..|+++.  ...+.+.|++++|++.|.
T Consensus        14 ~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~   91 (226)
T PRK05785         14 AYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNL   91 (226)
T ss_pred             HHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHH
Confidence            45555666666666555444433432          113589999999999999998872  125566899999999988


Q ss_pred             HcCCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          296 ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       296 eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      ++. ....+  +++.+||++++||+|+|+.++.++.
T Consensus        92 ~~~-~~~~~--d~~~lp~~d~sfD~v~~~~~l~~~~  124 (226)
T PRK05785         92 VAD-DKVVG--SFEALPFRDKSFDVVMSSFALHASD  124 (226)
T ss_pred             hcc-ceEEe--chhhCCCCCCCEEEEEecChhhccC
Confidence            763 34444  4678999999999999999886554

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.16  E-value=5.3e-11  Score=112.13  Aligned_cols=76  Identities=18%  Similarity=0.177  Sum_probs=56.5

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC-------C-CeEEeeccccCCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG-------L-PAMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG-------v-pa~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .+|||||||||.++..|+++ +.. ..+.+.|++++|++.|+++.       . .+.+-..|++.+||++++||+|+|+.
T Consensus        75 ~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  153 (261)
T PLN02233         75 DRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY  153 (261)
T ss_pred             CEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence            58999999999999888765 211 13456788888988887552       1 23333446789999999999999999


Q ss_pred             cccccC
Q 019228          326 CGVDWD  331 (344)
Q Consensus       326 ~Li~W~  331 (344)
                      ++.++.
T Consensus       154 ~l~~~~  159 (261)
T PLN02233        154 GLRNVV  159 (261)
T ss_pred             ccccCC
Confidence            886664

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.15  E-value=4.4e-11  Score=110.02  Aligned_cols=87  Identities=26%  Similarity=0.367  Sum_probs=71.5

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhh-CCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCC-
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-  311 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Lae-r~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rL-  311 (344)
                      ++.|.++++.+          .+|||+|||.|.+.++|.+ ++|.+..   .+++++.+..+.++|+++++++++. .| 
T Consensus         4 ~~~I~~~I~pg----------srVLDLGCGdG~LL~~L~~~k~v~g~G---vEid~~~v~~cv~rGv~Viq~Dld~-gL~   69 (193)
T PF07021_consen    4 LQIIAEWIEPG----------SRVLDLGCGDGELLAYLKDEKQVDGYG---VEIDPDNVAACVARGVSVIQGDLDE-GLA   69 (193)
T ss_pred             HHHHHHHcCCC----------CEEEecCCCchHHHHHHHHhcCCeEEE---EecCHHHHHHHHHcCCCEEECCHHH-hHh
Confidence            45677877632          4799999999999999988 5776544   6788888999999999999999975 46 


Q ss_pred             CCCCCcccceEecccccccCccc
Q 019228          312 PYPSLSFDMLHCARCGVDWDQKG  334 (344)
Q Consensus       312 PFpD~SFDlVhcs~~Li~W~~~~  334 (344)
                      .|+|+|||.|+++++|.+....+
T Consensus        70 ~f~d~sFD~VIlsqtLQ~~~~P~   92 (193)
T PF07021_consen   70 DFPDQSFDYVILSQTLQAVRRPD   92 (193)
T ss_pred             hCCCCCccEEehHhHHHhHhHHH
Confidence            59999999999999997765543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.12  E-value=6.1e-11  Score=90.79  Aligned_cols=70  Identities=26%  Similarity=0.414  Sum_probs=53.5

Q ss_pred             EEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcCCC--eEEeeccccCCCCCCCcccceEeccccccc
Q 019228          258 LDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       258 LDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRGvp--a~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      ||+|||+|.++..|+++ +.   ++.+.|.++++++.++++...  ..+...+.+.+||++++||+|+|..++.++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec
Confidence            89999999999999998 43   556689999999999887432  224445678999999999999999999666

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.01  E-value=9.2e-10  Score=101.51  Aligned_cols=73  Identities=18%  Similarity=0.328  Sum_probs=57.6

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC--CeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv--pa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      ..+|||+|||+|.++..|++++.   .+.+.|+++.+++.|+++..  .+..+  |.+.+||++++||+|+|+.++ +|.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~--d~~~~~~~~~~fD~V~s~~~l-~~~  116 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAG--DIESLPLATATFDLAWSNLAV-QWC  116 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEc--CcccCcCCCCcEEEEEECchh-hhc
Confidence            35799999999999999887753   44557889999999887753  33444  567899999999999998776 776


Q ss_pred             c
Q 019228          332 Q  332 (344)
Q Consensus       332 ~  332 (344)
                      .
T Consensus       117 ~  117 (251)
T PRK10258        117 G  117 (251)
T ss_pred             C
Confidence            4

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.00  E-value=8e-10  Score=101.05  Aligned_cols=75  Identities=19%  Similarity=0.141  Sum_probs=58.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .+|||||||+|.++..|++.. ....+.+.|+++.+++.|+++.  +.+..++  ... ||++++||+|+|..+++|+.+
T Consensus        45 ~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d--~~~-~~~~~sfD~V~~~~vL~hl~p  120 (204)
T TIGR03587        45 ASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGS--LFD-PFKDNFFDLVLTKGVLIHINP  120 (204)
T ss_pred             CcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEee--ccC-CCCCCCEEEEEECChhhhCCH
Confidence            579999999999999988751 1125667899999999998753  4445554  445 999999999999999988864


Q ss_pred             c
Q 019228          333 K  333 (344)
Q Consensus       333 ~  333 (344)
                      .
T Consensus       121 ~  121 (204)
T TIGR03587       121 D  121 (204)
T ss_pred             H
Confidence            3

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.94  E-value=1.6e-09  Score=100.72  Aligned_cols=73  Identities=25%  Similarity=0.408  Sum_probs=57.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .+|||||||+|.++..|+++.. ...+.+.|+++.|++.|+++++.+..++  ++.++ ++++||+|+|+.++ +|..
T Consensus        31 ~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~~~~~~~~d--~~~~~-~~~~fD~v~~~~~l-~~~~  103 (255)
T PRK14103         31 RRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARERGVDARTGD--VRDWK-PKPDTDVVVSNAAL-QWVP  103 (255)
T ss_pred             CEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhcCCcEEEcC--hhhCC-CCCCceEEEEehhh-hhCC
Confidence            5899999999999999987621 1245667899999999998888777765  45664 67899999999887 6654

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.88  E-value=4.7e-09  Score=99.07  Aligned_cols=90  Identities=18%  Similarity=0.200  Sum_probs=64.5

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC---CeEEeecccc
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASK  309 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv---pa~~~~lda~  309 (344)
                      ..+.+.+.+.+.++        .+|||||||+|.++..|++..  ...+.+.|+++.+++.|+++..   .+.+...|..
T Consensus        40 ~~~~~l~~l~l~~~--------~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~  109 (263)
T PTZ00098         40 ATTKILSDIELNEN--------SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDIL  109 (263)
T ss_pred             HHHHHHHhCCCCCC--------CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcc
Confidence            35555566655432        579999999999998887641  1245567888899888887632   2333334566


Q ss_pred             CCCCCCCcccceEecccccccCc
Q 019228          310 QLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       310 rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .+||++++||+|++..+++|+..
T Consensus       110 ~~~~~~~~FD~V~s~~~l~h~~~  132 (263)
T PTZ00098        110 KKDFPENTFDMIYSRDAILHLSY  132 (263)
T ss_pred             cCCCCCCCeEEEEEhhhHHhCCH
Confidence            89999999999999988877753

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.87  E-value=5.9e-09  Score=98.19  Aligned_cols=72  Identities=24%  Similarity=0.358  Sum_probs=54.9

Q ss_pred             CeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      .+|||||||+|.++..|++..  .....+.+.|+++.+++.|.++...+.+...|+..+||++++||+|++..+
T Consensus        87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~  160 (272)
T PRK11088         87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA  160 (272)
T ss_pred             CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC
Confidence            579999999999999887641  111245678999999999987754444444467789999999999998653

>PLN02244 tocopherol O-methyltransferase

Probab=98.86  E-value=6.8e-09  Score=101.44  Aligned_cols=76  Identities=21%  Similarity=0.304  Sum_probs=57.2

Q ss_pred             CCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEeccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      ..+|||||||+|.++..|+++ +.   .+.+.|+++.|++.|.++    ++  .+.+...|+..+||++++||+|+|..+
T Consensus       119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~  195 (340)
T PLN02244        119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES  195 (340)
T ss_pred             CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence            358999999999999999885 33   334467777777766543    43  234444567889999999999999999


Q ss_pred             ccccCc
Q 019228          327 GVDWDQ  332 (344)
Q Consensus       327 Li~W~~  332 (344)
                      +.|+..
T Consensus       196 ~~h~~d  201 (340)
T PLN02244        196 GEHMPD  201 (340)
T ss_pred             hhccCC
Confidence            877754

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.86  E-value=9.5e-10  Score=88.11  Aligned_cols=82  Identities=20%  Similarity=0.281  Sum_probs=56.9

Q ss_pred             EEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHcC----CCeEEeeccccCCCCCCCcccceEeccc-ccc
Q 019228          257 ILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARC-GVD  329 (344)
Q Consensus       257 VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eRG----vpa~~~~lda~rLPFpD~SFDlVhcs~~-Li~  329 (344)
                      |||+|||+|..+..+.+.-  .....+.+.|+++++++.++++.    +++.+-..|.+.+|+.+++||+|+|+.+ +.+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999998887652  01135667899999999888764    5555555677899999999999999766 544


Q ss_pred             cCcccccccc
Q 019228          330 WDQKGKCQKF  339 (344)
Q Consensus       330 W~~~~g~~~~  339 (344)
                       ..++.+.++
T Consensus        81 -~~~~~~~~l   89 (101)
T PF13649_consen   81 -LSPEELEAL   89 (101)
T ss_dssp             -SSHHHHHHH
T ss_pred             -CCHHHHHHH
Confidence             554444443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.84  E-value=5.2e-09  Score=94.87  Aligned_cols=75  Identities=17%  Similarity=0.218  Sum_probs=52.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||+|||+|.++..|++..-....+.+.|+++.+++.|.++    +++ +.+...|...+||++++||+|++..++.+
T Consensus        47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~  126 (231)
T TIGR02752        47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRN  126 (231)
T ss_pred             CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccccc
Confidence            5899999999999998887510111345567777887776654    222 22333356789999999999999876633

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.77  E-value=1.9e-08  Score=95.18  Aligned_cols=90  Identities=24%  Similarity=0.372  Sum_probs=68.9

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCC--eEEeeccccC
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQ  310 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvp--a~~~~lda~r  310 (344)
                      ..+.-.+++.+..+      ..+-|||||||+|.-+..|.+.+-   -..+.|+++.|++.|.++.+.  .++++|. +-
T Consensus        36 m~eRaLELLalp~~------~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG-~G  105 (270)
T KOG1541|consen   36 MAERALELLALPGP------KSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMG-EG  105 (270)
T ss_pred             HHHHHHHHhhCCCC------CCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecC-CC
Confidence            34455566665432      346899999999999999988763   234578888888888887654  5778885 89


Q ss_pred             CCCCCCcccceEecccccccCcc
Q 019228          311 LPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       311 LPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      |||+.++||.|++..++ +|.=|
T Consensus       106 lpfrpGtFDg~ISISAv-QWLcn  127 (270)
T KOG1541|consen  106 LPFRPGTFDGVISISAV-QWLCN  127 (270)
T ss_pred             CCCCCCccceEEEeeee-eeecc
Confidence            99999999999999877 88643

>PRK08317 hypothetical protein; Provisional

Probab=98.76  E-value=3.5e-08  Score=87.68  Aligned_cols=94  Identities=22%  Similarity=0.345  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeec
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSF  306 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~l  306 (344)
                      ..|.+.+.+.+.+..+        .+|||+|||+|.++..++++-.....+.+.|.++.+++.|+++    .....+...
T Consensus         5 ~~~~~~~~~~~~~~~~--------~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~   76 (241)
T PRK08317          5 RRYRARTFELLAVQPG--------DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG   76 (241)
T ss_pred             HHHHHHHHHHcCCCCC--------CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec
Confidence            4566667777665432        5899999999999998877521112445577888888877765    122333344


Q ss_pred             cccCCCCCCCcccceEecccccccCc
Q 019228          307 ASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      |...+|+++++||+|++..++.++..
T Consensus        77 d~~~~~~~~~~~D~v~~~~~~~~~~~  102 (241)
T PRK08317         77 DADGLPFPDGSFDAVRSDRVLQHLED  102 (241)
T ss_pred             ccccCCCCCCCceEEEEechhhccCC
Confidence            56788999999999999988866543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.75  E-value=2.6e-08  Score=88.98  Aligned_cols=83  Identities=24%  Similarity=0.342  Sum_probs=61.5

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcCCCeEEeeccccCC-
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-  311 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rL-  311 (344)
                      ++.+.+.++.          ..+|||||||+|.++..|++. ++.   +.+.|+++++++.|.++++.+..+++. +.+ 
T Consensus         4 ~~~i~~~i~~----------~~~iLDiGcG~G~~~~~l~~~~~~~---~~giD~s~~~i~~a~~~~~~~~~~d~~-~~l~   69 (194)
T TIGR02081         4 LESILNLIPP----------GSRVLDLGCGDGELLALLRDEKQVR---GYGIEIDQDGVLACVARGVNVIQGDLD-EGLE   69 (194)
T ss_pred             HHHHHHhcCC----------CCEEEEeCCCCCHHHHHHHhccCCc---EEEEeCCHHHHHHHHHcCCeEEEEEhh-hccc
Confidence            4556666542          147999999999999888764 332   245688889998888888887777653 235 


Q ss_pred             CCCCCcccceEeccccccc
Q 019228          312 PYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       312 PFpD~SFDlVhcs~~Li~W  330 (344)
                      ++++++||+|+|+.++.+-
T Consensus        70 ~~~~~sfD~Vi~~~~l~~~   88 (194)
T TIGR02081        70 AFPDKSFDYVILSQTLQAT   88 (194)
T ss_pred             ccCCCCcCEEEEhhHhHcC
Confidence            5889999999999988443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.75  E-value=8.6e-09  Score=99.07  Aligned_cols=109  Identities=14%  Similarity=0.123  Sum_probs=76.6

Q ss_pred             ccccchhhHHHHHHHHhccccCcccccC--------CCCeEEEECCccchhhHHHhhC--C---ceEEEcccccccHHHH
Q 019228          225 LIFDGVEDYSHQIAEMIGLRNESNFILA--------GVRTILDIGCGYGSFGAHLFSK--E---LLTMCIANYEASGSQV  291 (344)
Q Consensus       225 t~F~g~~~yId~I~e~Lpl~~g~~w~~~--------~ir~VLDVGCGtGsfaa~Laer--~---V~~~sIa~~D~sea~I  291 (344)
                      ..|..++.++|.+++++.++.++-|..-        ..-++|||+||||..|..+.+.  .   -....+...|+++.|+
T Consensus        64 ~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL  143 (296)
T KOG1540|consen   64 HVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML  143 (296)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence            3577889999999999998877667421        1238999999999999888764  1   0001223346666666


Q ss_pred             HHHHHc----CCC----eEEeeccccCCCCCCCcccceEecccccccCcc
Q 019228          292 QLTLER----GLP----AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       292 q~A~eR----Gvp----a~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      ..+++|    ++.    ..+-..||+.|||||++||+.+.+..+=+|+.-
T Consensus       144 ~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~  193 (296)
T KOG1540|consen  144 AVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHI  193 (296)
T ss_pred             HHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCH
Confidence            555444    332    233334799999999999999999888888753

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.73  E-value=2.2e-08  Score=84.02  Aligned_cols=86  Identities=23%  Similarity=0.468  Sum_probs=61.0

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccC
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ  310 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~r  310 (344)
                      ..+.+.+.++.+...       ...+|||||||+|.++..|++.+.   .+.+.|+++.+++.   +.+.  ....+...
T Consensus         7 ~~~~~~~~~~~~~~~-------~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~--~~~~~~~~   71 (161)
T PF13489_consen    7 RAYADLLERLLPRLK-------PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVV--FDNFDAQD   71 (161)
T ss_dssp             HCHHHHHHHHHTCTT-------TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSE--EEEEECHT
T ss_pred             HHHHHHHHHHhcccC-------CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhh--hhhhhhhh
Confidence            445667777775211       235899999999999999988865   55667888887665   2222  22223457


Q ss_pred             CCCCCCcccceEecccccccCc
Q 019228          311 LPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       311 LPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .++++++||+|+|..++ +|.+
T Consensus        72 ~~~~~~~fD~i~~~~~l-~~~~   92 (161)
T PF13489_consen   72 PPFPDGSFDLIICNDVL-EHLP   92 (161)
T ss_dssp             HHCHSSSEEEEEEESSG-GGSS
T ss_pred             hhccccchhhHhhHHHH-hhcc
Confidence            78899999999999888 5554

...

>PRK06202 hypothetical protein; Provisional

Probab=98.72  E-value=3.7e-08  Score=90.18  Aligned_cols=76  Identities=21%  Similarity=0.275  Sum_probs=56.7

Q ss_pred             CCeEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHHcC----CCeEEeeccccCCCCCCCcccceEecc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~eRG----vpa~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      ..+|||+|||+|.++..|++.    +. ...+.+.|+++.+++.|+++.    +.+...  ++..+|+++++||+|+|+.
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~--~~~~l~~~~~~fD~V~~~~  137 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGL-RLEVTAIDPDPRAVAFARANPRRPGVTFRQA--VSDELVAEGERFDVVTSNH  137 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCC-CcEEEEEcCCHHHHHHHHhccccCCCeEEEE--ecccccccCCCccEEEECC
Confidence            358999999999998887642    22 135667899999999887762    333443  4567888999999999999


Q ss_pred             cccccCc
Q 019228          326 CGVDWDQ  332 (344)
Q Consensus       326 ~Li~W~~  332 (344)
                      +++|..+
T Consensus       138 ~lhh~~d  144 (232)
T PRK06202        138 FLHHLDD  144 (232)
T ss_pred             eeecCCh
Confidence            9866544

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.68  E-value=4.5e-08  Score=88.21  Aligned_cols=74  Identities=27%  Similarity=0.347  Sum_probs=55.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++    ++  .+.+...   .+++.+++||+|+|..+++
T Consensus        65 ~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~~~fD~v~~~~~l~  138 (230)
T PRK07580         65 LRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVG---DLESLLGRFDTVVCLDVLI  138 (230)
T ss_pred             CEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEc---CchhccCCcCEEEEcchhh
Confidence            5899999999999999988764   356678888888887765    22  1222222   3677789999999999998


Q ss_pred             ccCccc
Q 019228          329 DWDQKG  334 (344)
Q Consensus       329 ~W~~~~  334 (344)
                      +|...+
T Consensus       139 ~~~~~~  144 (230)
T PRK07580        139 HYPQED  144 (230)
T ss_pred             cCCHHH
Confidence            886543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.67  E-value=4.8e-08  Score=88.25  Aligned_cols=73  Identities=14%  Similarity=0.226  Sum_probs=50.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||+|||+|.++.+|++++.   .+.+.|+++.+++.|++    .++. +.....|...++++ ++||+|+|+.++++
T Consensus        32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~  107 (197)
T PRK11207         32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF  107 (197)
T ss_pred             CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence            4799999999999999999854   34556788877776554    2443 22222344566774 67999999988744


Q ss_pred             cC
Q 019228          330 WD  331 (344)
Q Consensus       330 W~  331 (344)
                      +.
T Consensus       108 ~~  109 (197)
T PRK11207        108 LE  109 (197)
T ss_pred             CC
Confidence            33

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.65  E-value=6.5e-08  Score=89.44  Aligned_cols=75  Identities=17%  Similarity=0.259  Sum_probs=53.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .+|||||||+|.++..|+++.- ...+.+.|+++.+++.|.++...+.+...|...++ ++++||+|+|+.++ +|..
T Consensus        33 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l-~~~~  107 (258)
T PRK01683         33 RYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASL-QWLP  107 (258)
T ss_pred             CEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccCh-hhCC
Confidence            5899999999999999887521 12445578888999988876322323333444554 56799999999887 6664

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.65  E-value=1.8e-08  Score=98.70  Aligned_cols=75  Identities=16%  Similarity=0.200  Sum_probs=57.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC----C--CeEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L--PAMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG----v--pa~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+|||||||+|.++..|++.+.   .+.+.|.++.+++.|+++.    .  .+.+...+++.+|+++++||+|+|..++.
T Consensus       133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe  209 (322)
T PLN02396        133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE  209 (322)
T ss_pred             CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence            4899999999999999988754   3455788888888887541    1  22233335678999999999999999997


Q ss_pred             ccCc
Q 019228          329 DWDQ  332 (344)
Q Consensus       329 ~W~~  332 (344)
                      |...
T Consensus       210 Hv~d  213 (322)
T PLN02396        210 HVAN  213 (322)
T ss_pred             hcCC
Confidence            7754

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.64  E-value=4.7e-08  Score=88.63  Aligned_cols=91  Identities=16%  Similarity=0.268  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC----C--CeEEe
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L--PAMIG  304 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG----v--pa~~~  304 (344)
                      +.+.+.+.+.++...      ....+|||+|||+|.++..|++.+.   .+.+.|+++.+++.|+++.    .  .+.+.
T Consensus        39 ~~~~~~~~~~l~~~~------~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~  109 (219)
T TIGR02021        39 AAMRRKLLDWLPKDP------LKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFE  109 (219)
T ss_pred             HHHHHHHHHHHhcCC------CCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence            444555666655200      1235899999999999999988754   4456788888888877652    2  23333


Q ss_pred             eccccCCCCCCCcccceEecccccccCcc
Q 019228          305 SFASKQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      ..|...++   ++||+|++..+++++...
T Consensus       110 ~~d~~~~~---~~fD~ii~~~~l~~~~~~  135 (219)
T TIGR02021       110 VNDLLSLC---GEFDIVVCMDVLIHYPAS  135 (219)
T ss_pred             ECChhhCC---CCcCEEEEhhHHHhCCHH
Confidence            33455555   899999999998787553

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.64  E-value=4e-08  Score=84.14  Aligned_cols=75  Identities=23%  Similarity=0.317  Sum_probs=53.9

Q ss_pred             CeEEEECCccchhhHHHhh-CCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC--CCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP--YPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Lae-r~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP--FpD~SFDlVhcs~~  326 (344)
                      .+|||+|||+|.++..|++ .+- ...+.+.|.++.+++.|.++    +++ +.+...|..+++  |+ +.||+|++..+
T Consensus         5 ~~iLDlGcG~G~~~~~l~~~~~~-~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~   82 (152)
T PF13847_consen    5 KKILDLGCGTGRLLIQLAKELNP-GAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV   82 (152)
T ss_dssp             SEEEEET-TTSHHHHHHHHHSTT-TSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred             CEEEEecCcCcHHHHHHHHhcCC-CCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence            4899999999999999984 311 11356678999999888773    454 444444566788  88 99999999988


Q ss_pred             ccccC
Q 019228          327 GVDWD  331 (344)
Q Consensus       327 Li~W~  331 (344)
                      +++..
T Consensus        83 l~~~~   87 (152)
T PF13847_consen   83 LHHFP   87 (152)
T ss_dssp             GGGTS
T ss_pred             hhhcc
Confidence            84444

...

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.60  E-value=1.2e-07  Score=92.44  Aligned_cols=87  Identities=17%  Similarity=0.216  Sum_probs=57.8

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHH--HHHc----CCCeEEeecc
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL--TLER----GLPAMIGSFA  307 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~--A~eR----Gvpa~~~~ld  307 (344)
                      .+.+...++.-.        .++|||||||+|.++..|++.+..  .+.+.|.++.++..  +.++    ...+.+-..+
T Consensus       111 ~~~l~~~l~~l~--------g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d  180 (322)
T PRK15068        111 WDRVLPHLSPLK--------GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLG  180 (322)
T ss_pred             HHHHHHhhCCCC--------CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCC
Confidence            455666665222        268999999999999999887532  23445666655532  2222    1233444446


Q ss_pred             ccCCCCCCCcccceEecccccccC
Q 019228          308 SKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       308 a~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+.+|+ +++||+|+|..+++|+.
T Consensus       181 ~e~lp~-~~~FD~V~s~~vl~H~~  203 (322)
T PRK15068        181 IEQLPA-LKAFDTVFSMGVLYHRR  203 (322)
T ss_pred             HHHCCC-cCCcCEEEECChhhccC
Confidence            678999 89999999999987764

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.60  E-value=1.2e-07  Score=85.57  Aligned_cols=73  Identities=15%  Similarity=0.265  Sum_probs=51.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||+|||+|.++.+|++++.   .+.+.|+++.+++.+.+    .++++.....+...++++ ++||+|+|+.++++.
T Consensus        32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~  107 (195)
T TIGR00477        32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFL  107 (195)
T ss_pred             CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccC
Confidence            4799999999999999998753   34556777777765543    355533333344456665 689999999887544


Q ss_pred             C
Q 019228          331 D  331 (344)
Q Consensus       331 ~  331 (344)
                      +
T Consensus       108 ~  108 (195)
T TIGR00477       108 Q  108 (195)
T ss_pred             C
Confidence            3

Part of a tellurite-reducing operon tehA and tehB

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.60  E-value=1e-07  Score=93.26  Aligned_cols=73  Identities=22%  Similarity=0.292  Sum_probs=53.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC----------CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----------PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv----------pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.|++.|+++.-          ...+...   .++..+++||+|+|.
T Consensus       146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~---Dl~~l~~~fD~Vv~~  219 (315)
T PLN02585        146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN---DLESLSGKYDTVTCL  219 (315)
T ss_pred             CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc---chhhcCCCcCEEEEc
Confidence            4899999999999999998864   45567888888888876621          1222222   344447899999999


Q ss_pred             ccccccCcc
Q 019228          325 RCGVDWDQK  333 (344)
Q Consensus       325 ~~Li~W~~~  333 (344)
                      .+++|+...
T Consensus       220 ~vL~H~p~~  228 (315)
T PLN02585        220 DVLIHYPQD  228 (315)
T ss_pred             CEEEecCHH
Confidence            999887654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.59  E-value=2.4e-08  Score=94.77  Aligned_cols=77  Identities=18%  Similarity=0.289  Sum_probs=59.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||||||.|.++..|++.|.   .+.+.|+++.+|+.|+.+    ++.+.+....++.|-...++||+|+|..++.|-
T Consensus        61 ~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv  137 (243)
T COG2227          61 LRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV  137 (243)
T ss_pred             CeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence            4799999999999999999874   456678888888877744    444333334466777777999999999999887


Q ss_pred             Cccc
Q 019228          331 DQKG  334 (344)
Q Consensus       331 ~~~~  334 (344)
                      ...+
T Consensus       138 ~dp~  141 (243)
T COG2227         138 PDPE  141 (243)
T ss_pred             CCHH
Confidence            6654

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.59  E-value=1.3e-07  Score=95.32  Aligned_cols=75  Identities=21%  Similarity=0.395  Sum_probs=56.8

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc--CC--CeEEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER--GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR--Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||||||+|.++..|+++ +.   .+.+.|+++.+++.|+++  +.  .+.+...|...+||++++||+|+|..++.|
T Consensus       268 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h  344 (475)
T PLN02336        268 QKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH  344 (475)
T ss_pred             CEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence            58999999999999888875 32   455678888888887664  22  233434456788999999999999998877


Q ss_pred             cCc
Q 019228          330 WDQ  332 (344)
Q Consensus       330 W~~  332 (344)
                      +..
T Consensus       345 ~~d  347 (475)
T PLN02336        345 IQD  347 (475)
T ss_pred             cCC
Confidence            653

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.55  E-value=7.9e-08  Score=91.18  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=57.5

Q ss_pred             CeEEEECCccch----hhHHHhhCCc----eEEEcccccccHHHHHHHHHcC--------CC------------------
Q 019228          255 RTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLERG--------LP------------------  300 (344)
Q Consensus       255 r~VLDVGCGtGs----faa~Laer~V----~~~sIa~~D~sea~Iq~A~eRG--------vp------------------  300 (344)
                      .+|||+|||||.    ++..|++...    ....|.+.|+++.+++.|++.-        +|                  
T Consensus       101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~  180 (264)
T smart00138      101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVK  180 (264)
T ss_pred             EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEC
Confidence            479999999994    6666665421    1346778899999999887631        11                  


Q ss_pred             ------eEEeeccccCCCCCCCcccceEecccccccCccc
Q 019228          301 ------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKG  334 (344)
Q Consensus       301 ------a~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~~  334 (344)
                            +.+...|...+|+++++||+|+|..+++++...+
T Consensus       181 ~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~  220 (264)
T smart00138      181 PELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPT  220 (264)
T ss_pred             hHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHH
Confidence                  2233345567888899999999999998886543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.55  E-value=1.3e-07  Score=88.19  Aligned_cols=73  Identities=15%  Similarity=0.094  Sum_probs=53.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCC-CCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQL-PYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rL-PFpD~SFDlVhcs~~L  327 (344)
                      .+|||+|||+|.++..|++++.   .+.+.|+++.+++.|+++    ++.  +.+...+.+.+ ++++++||+|+|..++
T Consensus        46 ~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl  122 (255)
T PRK11036         46 LRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL  122 (255)
T ss_pred             CEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence            5899999999999999998864   345578888888877764    331  22222244555 4788999999999988


Q ss_pred             ccc
Q 019228          328 VDW  330 (344)
Q Consensus       328 i~W  330 (344)
                      .+.
T Consensus       123 ~~~  125 (255)
T PRK11036        123 EWV  125 (255)
T ss_pred             Hhh
Confidence            544

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.55  E-value=1.1e-07  Score=84.87  Aligned_cols=73  Identities=22%  Similarity=0.389  Sum_probs=55.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---CCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+|||+|||+|.++..|++.... ..+.+.|.++.+++.+.++.   +....+  |...+|+++++||+|+|..++ +|.
T Consensus        36 ~~vLDlG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~fD~vi~~~~l-~~~  111 (240)
T TIGR02072        36 ASVLDIGCGTGYLTRALLKRFPQ-AEFIALDISAGMLAQAKTKLSENVQFICG--DAEKLPLEDSSFDLIVSNLAL-QWC  111 (240)
T ss_pred             CeEEEECCCccHHHHHHHHhCCC-CcEEEEeChHHHHHHHHHhcCCCCeEEec--chhhCCCCCCceeEEEEhhhh-hhc
Confidence            57999999999999999886421 23456788888888877663   334444  456889999999999999887 555

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.50  E-value=1.6e-07  Score=75.15  Aligned_cols=74  Identities=19%  Similarity=0.208  Sum_probs=47.9

Q ss_pred             CeEEEECCccchhhHHHhh--CCceEEEcccccccHHHHHHHHHcC------CCeEEeeccccCCCCCCCcccceEecc-
Q 019228          255 RTILDIGCGYGSFGAHLFS--KELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCAR-  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Lae--r~V~~~sIa~~D~sea~Iq~A~eRG------vpa~~~~lda~rLPFpD~SFDlVhcs~-  325 (344)
                      .+|||+|||+|.++..|++  .+..   +.+.|.++.+++.|+++-      -.+.+-..|....+-..+.||+|++.. 
T Consensus         3 ~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   79 (112)
T PF12847_consen    3 GRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF   79 (112)
T ss_dssp             CEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred             CEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence            4799999999999999998  5543   445677888887776652      123332223312233344599999998 


Q ss_pred             cccccC
Q 019228          326 CGVDWD  331 (344)
Q Consensus       326 ~Li~W~  331 (344)
                      ++..+.
T Consensus        80 ~~~~~~   85 (112)
T PF12847_consen   80 TLHFLL   85 (112)
T ss_dssp             SGGGCC
T ss_pred             cccccc
Confidence            543343

...

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.49  E-value=2.1e-07  Score=93.87  Aligned_cols=88  Identities=16%  Similarity=0.193  Sum_probs=62.4

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-----CCeEEeeccc
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFAS  308 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-----vpa~~~~lda  308 (344)
                      ...+.+.++...        ..+|||||||+|.++..|+++..   .+.+.|.++.+++.+.++.     +.+..+++..
T Consensus        26 ~~~il~~l~~~~--------~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~   94 (475)
T PLN02336         26 RPEILSLLPPYE--------GKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGHYKNVKFMCADVTS   94 (475)
T ss_pred             hhHHHhhcCccC--------CCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhccCCceEEEEecccc
Confidence            345566665322        24899999999999999988742   3455678888887765432     3345555544


Q ss_pred             cCCCCCCCcccceEecccccccCc
Q 019228          309 KQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       309 ~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      ..+||++++||+|+|..++.++..
T Consensus        95 ~~~~~~~~~fD~I~~~~~l~~l~~  118 (475)
T PLN02336         95 PDLNISDGSVDLIFSNWLLMYLSD  118 (475)
T ss_pred             cccCCCCCCEEEEehhhhHHhCCH
Confidence            568999999999999998865543

>TIGR00452 methyltransferase, putative

Probab=98.44  E-value=5.6e-07  Score=88.11  Aligned_cols=75  Identities=19%  Similarity=0.241  Sum_probs=50.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH--Hc--C--CCeEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ER--G--LPAMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~--eR--G--vpa~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      ++|||||||+|.++..++..+..  .+.+.|.++.|+..+.  ++  +  ..+.+-.++.+.+|+. ++||+|+|+.+++
T Consensus       123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~  199 (314)
T TIGR00452       123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVLY  199 (314)
T ss_pred             CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchhh
Confidence            68999999999999888877542  2345666666654321  11  1  1233333456678875 4899999999998


Q ss_pred             ccCc
Q 019228          329 DWDQ  332 (344)
Q Consensus       329 ~W~~  332 (344)
                      |+..
T Consensus       200 H~~d  203 (314)
T TIGR00452       200 HRKS  203 (314)
T ss_pred             ccCC
Confidence            8754

Known examples to date are restricted to the proteobacteria.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.44  E-value=5.2e-07  Score=80.06  Aligned_cols=75  Identities=17%  Similarity=0.245  Sum_probs=52.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC---CeEEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv---pa~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||+|||+|.++..+++.......+.+.|+++.+++.+.++..   .+.+...+...+|+++++||+|++...+.+
T Consensus        41 ~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~  118 (223)
T TIGR01934        41 QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRN  118 (223)
T ss_pred             CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCC
Confidence            589999999999999888763211244557788888777766531   122223345678899999999999876644

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.43  E-value=4.5e-07  Score=86.37  Aligned_cols=72  Identities=15%  Similarity=0.200  Sum_probs=51.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||+|||+|.++.+|++++.   .+.+.|.++.+++.+++    .++.+.....|....++ +++||+|+|..++.+.
T Consensus       122 ~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l  197 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL  197 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence            4799999999999999998764   44556888877766543    35544333334444554 7899999999887543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.40  E-value=6.3e-07  Score=88.79  Aligned_cols=76  Identities=17%  Similarity=0.231  Sum_probs=56.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||||||+|.++..++++. ....+...|.++.|++.|+++    ++.+..+  |.+.+||++++||+|++..++.+|
T Consensus       115 ~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~g--D~e~lp~~~~sFDvVIs~~~L~~~  191 (340)
T PLN02490        115 LKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEG--DAEDLPFPTDYADRYVSAGSIEYW  191 (340)
T ss_pred             CEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEec--cHHhCCCCCCceeEEEEcChhhhC
Confidence            479999999999888877641 012345578888888887765    3444444  567899999999999999888777


Q ss_pred             Ccc
Q 019228          331 DQK  333 (344)
Q Consensus       331 ~~~  333 (344)
                      .+.
T Consensus       192 ~d~  194 (340)
T PLN02490        192 PDP  194 (340)
T ss_pred             CCH
Confidence            643

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.39  E-value=7.2e-08  Score=91.83  Aligned_cols=85  Identities=26%  Similarity=0.330  Sum_probs=59.9

Q ss_pred             HHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeecccc-CCC-C
Q 019228          236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-QLP-Y  313 (344)
Q Consensus       236 ~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~-rLP-F  313 (344)
                      ++.+||...+.     +..+++||+|||||.++..|.++-   -.+++.|+|++|++.|.|+|+--.+...++. =++ .
T Consensus       113 ~l~emI~~~~~-----g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~  184 (287)
T COG4976         113 LLAEMIGKADL-----GPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDL  184 (287)
T ss_pred             HHHHHHHhccC-----CccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhc
Confidence            45666653222     235799999999999999988762   2456789999999999999864222222222 123 4


Q ss_pred             CCCcccceEeccccc
Q 019228          314 PSLSFDMLHCARCGV  328 (344)
Q Consensus       314 pD~SFDlVhcs~~Li  328 (344)
                      .++.||+|.+..++.
T Consensus       185 ~~er~DLi~AaDVl~  199 (287)
T COG4976         185 TQERFDLIVAADVLP  199 (287)
T ss_pred             cCCcccchhhhhHHH
Confidence            578899999999984

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.38  E-value=1.3e-06  Score=78.35  Aligned_cols=77  Identities=21%  Similarity=0.207  Sum_probs=54.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC------CCeEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG------vpa~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+|||+|||+|.++..++........+.+.|.++.+++.+.++-      ..+.+...+...+|+++++||+|+++.++.
T Consensus        53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~  132 (239)
T PRK00216         53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR  132 (239)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc
Confidence            47999999999999888775310124555777887777776641      123344446677889899999999988875


Q ss_pred             ccC
Q 019228          329 DWD  331 (344)
Q Consensus       329 ~W~  331 (344)
                      ++.
T Consensus       133 ~~~  135 (239)
T PRK00216        133 NVP  135 (239)
T ss_pred             cCC
Confidence            554

>TIGR00740 methyltransferase, putative

Probab=98.33  E-value=5.6e-07  Score=82.80  Aligned_cols=76  Identities=13%  Similarity=0.085  Sum_probs=51.8

Q ss_pred             CeEEEECCccchhhHHHhhCC-ceEEEcccccccHHHHHHHHHc----C--CCeEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~-V~~~sIa~~D~sea~Iq~A~eR----G--vpa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..++++- -....+.+.|+++.|++.|+++    +  ..+.+...|...+|+++  +|+|+|..++
T Consensus        55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~d~v~~~~~l  132 (239)
T TIGR00740        55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKN--ASMVILNFTL  132 (239)
T ss_pred             CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCC--CCEEeeecch
Confidence            479999999999998887641 0112455678888888887664    1  12333334566788764  8999999888


Q ss_pred             cccCc
Q 019228          328 VDWDQ  332 (344)
Q Consensus       328 i~W~~  332 (344)
                      +++..
T Consensus       133 ~~~~~  137 (239)
T TIGR00740       133 QFLPP  137 (239)
T ss_pred             hhCCH
Confidence            55543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.33  E-value=9.1e-07  Score=82.44  Aligned_cols=75  Identities=11%  Similarity=0.079  Sum_probs=50.4

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..|++. .-....+.+.|.++.|++.|+++    +.  .+.+...+...+|+++  ||+|+|..++
T Consensus        58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~--~D~vv~~~~l  135 (247)
T PRK15451         58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIEN--ASMVVLNFTL  135 (247)
T ss_pred             CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCC--CCEEehhhHH
Confidence            57999999999998877662 00112455678888888887765    22  2333333456777764  8999999887


Q ss_pred             cccC
Q 019228          328 VDWD  331 (344)
Q Consensus       328 i~W~  331 (344)
                      ++..
T Consensus       136 ~~l~  139 (247)
T PRK15451        136 QFLE  139 (247)
T ss_pred             HhCC
Confidence            5443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.31  E-value=1.5e-06  Score=85.37  Aligned_cols=87  Identities=17%  Similarity=0.228  Sum_probs=58.8

Q ss_pred             HHHHHHHhc-cccCcccccCCCCeEEEECCccchhhHHHhhCCce-EEEcccccccHHHHHHHHHc-C--CCeEEeeccc
Q 019228          234 SHQIAEMIG-LRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLER-G--LPAMIGSFAS  308 (344)
Q Consensus       234 Id~I~e~Lp-l~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~-~~sIa~~D~sea~Iq~A~eR-G--vpa~~~~lda  308 (344)
                      -+.+..+++ +.         .++|||||||.|.++.+|+.++.. ++.|.+....-.|-+++.+- |  .....-.+..
T Consensus       104 W~rl~p~l~~L~---------gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv  174 (315)
T PF08003_consen  104 WDRLLPHLPDLK---------GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV  174 (315)
T ss_pred             HHHHHhhhCCcC---------CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch
Confidence            455666664 32         368999999999999999998653 45665555544443333321 2  2223333457


Q ss_pred             cCCCCCCCcccceEeccccccc
Q 019228          309 KQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       309 ~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      +.||. .++||+|+|..+|+|=
T Consensus       175 E~Lp~-~~~FDtVF~MGVLYHr  195 (315)
T PF08003_consen  175 EDLPN-LGAFDTVFSMGVLYHR  195 (315)
T ss_pred             hhccc-cCCcCEEEEeeehhcc
Confidence            88998 8999999999999873

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.31  E-value=1.8e-07  Score=74.23  Aligned_cols=72  Identities=26%  Similarity=0.271  Sum_probs=34.8

Q ss_pred             EEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----C-CCeEEeeccccCC--CCCCCcccceEeccccccc
Q 019228          258 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQL--PYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       258 LDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----G-vpa~~~~lda~rL--PFpD~SFDlVhcs~~Li~W  330 (344)
                      ||||||+|.++..++++. ....+.+.|+++.+++.|++|    + .......+....+  +.+.++||+|++..+++++
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            899999999999988762 122444556666665444433    2 1122222222222  1223699999999998665

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK06922 hypothetical protein; Provisional

Probab=98.30  E-value=9.9e-07  Score=93.99  Aligned_cols=76  Identities=16%  Similarity=0.106  Sum_probs=55.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCC--CCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLP--FpD~SFDlVhcs~~Li  328 (344)
                      .+|||||||+|.++..|+++. ....+.+.|+++.|++.|+++    +..+.+-..|...+|  |++++||+|+++.+++
T Consensus       420 ~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH  498 (677)
T PRK06922        420 DTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH  498 (677)
T ss_pred             CEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence            589999999999988887642 122455678888888887764    233333223456788  8999999999998887


Q ss_pred             ccC
Q 019228          329 DWD  331 (344)
Q Consensus       329 ~W~  331 (344)
                      +|.
T Consensus       499 ~L~  501 (677)
T PRK06922        499 ELF  501 (677)
T ss_pred             hhh
Confidence            664

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.30  E-value=8e-07  Score=82.53  Aligned_cols=81  Identities=17%  Similarity=0.250  Sum_probs=53.5

Q ss_pred             CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--C---CCeEEeeccccCCCCCCCcccceEecccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--G---LPAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--G---vpa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      ..+.+||+|||.|.|+..|+.+.   -.+...|+++..++.|++|  +   +.+.++++  .. ..|+++||+|+++.++
T Consensus        43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv--p~-~~P~~~FDLIV~SEVl  116 (201)
T PF05401_consen   43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGLPHVEWIQADV--PE-FWPEGRFDLIVLSEVL  116 (201)
T ss_dssp             SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T--TT----SS-EEEEEEES-G
T ss_pred             ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC--CC-CCCCCCeeEEEEehHh
Confidence            34689999999999999999983   1445578888888999887  2   22334433  22 4689999999999999


Q ss_pred             cccCcccccccc
Q 019228          328 VDWDQKGKCQKF  339 (344)
Q Consensus       328 i~W~~~~g~~~~  339 (344)
                      +.+.+.+-++.+
T Consensus       117 YYL~~~~~L~~~  128 (201)
T PF05401_consen  117 YYLDDAEDLRAA  128 (201)
T ss_dssp             GGSSSHHHHHHH
T ss_pred             HcCCCHHHHHHH
Confidence            998876555444

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.27  E-value=1.9e-06  Score=80.69  Aligned_cols=75  Identities=15%  Similarity=0.033  Sum_probs=50.7

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+|||||||+|.++..++.. +.. ..+.+.|.++.+++.|+++    +++ +.+...+.+.+||++++||+|++..++.
T Consensus        79 ~~VLDiG~G~G~~~~~~a~~~g~~-~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~  157 (272)
T PRK11873         79 ETVLDLGSGGGFDCFLAARRVGPT-GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN  157 (272)
T ss_pred             CEEEEeCCCCCHHHHHHHHHhCCC-CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence            58999999999877655543 211 1344567788888877764    332 2232335678999999999999986664


Q ss_pred             cc
Q 019228          329 DW  330 (344)
Q Consensus       329 ~W  330 (344)
                      ++
T Consensus       158 ~~  159 (272)
T PRK11873        158 LS  159 (272)
T ss_pred             CC
Confidence            33

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.25  E-value=4.1e-06  Score=76.15  Aligned_cols=87  Identities=16%  Similarity=0.068  Sum_probs=53.7

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeec
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSF  306 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~l  306 (344)
                      .+..+.+.+....+        .+|||||||+|.+++.|++.--..-.+.+.|.++++++.|+++    ++.  +.+-..
T Consensus        60 ~~~~~~~~l~~~~~--------~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~  131 (205)
T PRK13944         60 MVAMMCELIEPRPG--------MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG  131 (205)
T ss_pred             HHHHHHHhcCCCCC--------CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            35556666654332        5799999999999988876410001234467777776666542    432  333333


Q ss_pred             cccCCCCCCCcccceEecccc
Q 019228          307 ASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~~L  327 (344)
                      |....+.++.+||+|++..++
T Consensus       132 d~~~~~~~~~~fD~Ii~~~~~  152 (205)
T PRK13944        132 DGKRGLEKHAPFDAIIVTAAA  152 (205)
T ss_pred             CcccCCccCCCccEEEEccCc
Confidence            455555567899999998765

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.24  E-value=2.4e-06  Score=85.50  Aligned_cols=84  Identities=24%  Similarity=0.324  Sum_probs=58.4

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC--CCeEEeeccc
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFAS  308 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda  308 (344)
                      ..++.|.+.+.++++        .+|||||||+|.++.+++++ ++   .+.+.|++++|++.|.++.  +.+.+...|.
T Consensus       154 ~k~~~l~~~l~l~~g--------~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~  222 (383)
T PRK11705        154 AKLDLICRKLQLKPG--------MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLPVEIRLQDY  222 (383)
T ss_pred             HHHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCeEEEEECch
Confidence            346666666655433        58999999999999999875 43   4556788999999888763  3333332344


Q ss_pred             cCCCCCCCcccceEecccccc
Q 019228          309 KQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       309 ~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      +.+   +++||.|+|..++.+
T Consensus       223 ~~l---~~~fD~Ivs~~~~eh  240 (383)
T PRK11705        223 RDL---NGQFDRIVSVGMFEH  240 (383)
T ss_pred             hhc---CCCCCEEEEeCchhh
Confidence            443   579999999877644

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.21  E-value=1.7e-06  Score=81.93  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=61.6

Q ss_pred             CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      ..+.|.|+|||+|..+..|+++=-. ..|.+.|.|.+|++.|++|.+.+.+...|.+.. -|+..+|+++++.++ ||.+
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w-~p~~~~dllfaNAvl-qWlp  106 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQRLPDATFEEADLRTW-KPEQPTDLLFANAVL-QWLP  106 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHhCCCCceecccHhhc-CCCCccchhhhhhhh-hhcc
Confidence            3578999999999999999998211 145678999999999998877665533333333 478899999999887 9988


Q ss_pred             ccc
Q 019228          333 KGK  335 (344)
Q Consensus       333 ~~g  335 (344)
                      +.+
T Consensus       107 dH~  109 (257)
T COG4106         107 DHP  109 (257)
T ss_pred             ccH
Confidence            765

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.21  E-value=1.7e-06  Score=82.75  Aligned_cols=71  Identities=18%  Similarity=0.327  Sum_probs=50.6

Q ss_pred             CCeEEEECCccchhhHHHhh-C--CceEEEcccccccHHHHHHHHHcC------CCeEEeeccccCCCCC--CCcccceE
Q 019228          254 VRTILDIGCGYGSFGAHLFS-K--ELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYP--SLSFDMLH  322 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Lae-r--~V~~~sIa~~D~sea~Iq~A~eRG------vpa~~~~lda~rLPFp--D~SFDlVh  322 (344)
                      -+.++|||||+| .+++.++ .  +|+     +.|++++|+++|.+.-      .|....  +.+-.++-  ++|.|+|+
T Consensus        34 h~~a~DvG~G~G-qa~~~iae~~k~VI-----atD~s~~mL~~a~k~~~~~y~~t~~~ms--~~~~v~L~g~e~SVDlI~  105 (261)
T KOG3010|consen   34 HRLAWDVGTGNG-QAARGIAEHYKEVI-----ATDVSEAMLKVAKKHPPVTYCHTPSTMS--SDEMVDLLGGEESVDLIT  105 (261)
T ss_pred             cceEEEeccCCC-cchHHHHHhhhhhe-----eecCCHHHHHHhhcCCCcccccCCcccc--ccccccccCCCcceeeeh
Confidence            458999999999 6665544 3  554     3689999999987652      222122  23445666  99999999


Q ss_pred             ecccccccCcc
Q 019228          323 CARCGVDWDQK  333 (344)
Q Consensus       323 cs~~Li~W~~~  333 (344)
                      |++|+ ||...
T Consensus       106 ~Aqa~-HWFdl  115 (261)
T KOG3010|consen  106 AAQAV-HWFDL  115 (261)
T ss_pred             hhhhH-Hhhch
Confidence            99999 88764

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.18  E-value=6.2e-06  Score=72.37  Aligned_cols=67  Identities=16%  Similarity=0.144  Sum_probs=49.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--C-CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--L-PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--v-pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..+++++.   .+.+.|.++.+++.++++-  . .+.+-..|+.++++++..||.|+++
T Consensus        15 ~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n   84 (169)
T smart00650       15 DTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGN   84 (169)
T ss_pred             CEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEEC
Confidence            4799999999999999998742   3445677777777776552  1 2223334577889999899999885

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.18  E-value=2.8e-06  Score=81.48  Aligned_cols=84  Identities=23%  Similarity=0.321  Sum_probs=49.9

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH----cCCC--eEEee
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE----RGLP--AMIGS  305 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e----RGvp--a~~~~  305 (344)
                      .++.+.+.+.+++|        .+|||||||-|.++.+++++ ++.+.   +..++++|++.|++    +|++  +.+-.
T Consensus        50 k~~~~~~~~~l~~G--------~~vLDiGcGwG~~~~~~a~~~g~~v~---gitlS~~Q~~~a~~~~~~~gl~~~v~v~~  118 (273)
T PF02353_consen   50 KLDLLCEKLGLKPG--------DRVLDIGCGWGGLAIYAAERYGCHVT---GITLSEEQAEYARERIREAGLEDRVEVRL  118 (273)
T ss_dssp             HHHHHHTTTT--TT---------EEEEES-TTSHHHHHHHHHH--EEE---EEES-HHHHHHHHHHHHCSTSSSTEEEEE
T ss_pred             HHHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHcCcEEE---EEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence            35555665555543        58999999999999999998 66443   34567778776654    4654  33333


Q ss_pred             ccccCCCCCCCcccceEeccccccc
Q 019228          306 FASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .|-..++.   +||.|+|..++-|-
T Consensus       119 ~D~~~~~~---~fD~IvSi~~~Ehv  140 (273)
T PF02353_consen  119 QDYRDLPG---KFDRIVSIEMFEHV  140 (273)
T ss_dssp             S-GGG------S-SEEEEESEGGGT
T ss_pred             eeccccCC---CCCEEEEEechhhc
Confidence            34445544   99999999887554

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.17  E-value=7.1e-06  Score=75.18  Aligned_cols=87  Identities=14%  Similarity=0.112  Sum_probs=55.2

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeecc
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFA  307 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~ld  307 (344)
                      .+..+.+.+.+..+        .+|||||||+|.+++.|++.--..-.+...|.++.+++.|+++    ++. +.+-..|
T Consensus        64 ~~~~~~~~l~~~~g--------~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd  135 (212)
T PRK13942         64 MVAIMCELLDLKEG--------MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD  135 (212)
T ss_pred             HHHHHHHHcCCCCc--------CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence            34556666655433        5899999999999988876410001334466777777766653    332 3333334


Q ss_pred             ccCCCCCCCcccceEecccc
Q 019228          308 SKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       308 a~rLPFpD~SFDlVhcs~~L  327 (344)
                      +...+++++.||+|++..+.
T Consensus       136 ~~~~~~~~~~fD~I~~~~~~  155 (212)
T PRK13942        136 GTLGYEENAPYDRIYVTAAG  155 (212)
T ss_pred             cccCCCcCCCcCEEEECCCc
Confidence            55566678999999997654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.17  E-value=4.8e-06  Score=80.96  Aligned_cols=89  Identities=21%  Similarity=0.260  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH----cCCCeEEee
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE----RGLPAMIGS  305 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~~~  305 (344)
                      ..-++.+.+.+.+++|        .++||||||=|.++.+++++ +|.++.   .++|++|...+++    +|+...+.+
T Consensus        58 ~~k~~~~~~kl~L~~G--------~~lLDiGCGWG~l~~~aA~~y~v~V~G---vTlS~~Q~~~~~~r~~~~gl~~~v~v  126 (283)
T COG2230          58 RAKLDLILEKLGLKPG--------MTLLDIGCGWGGLAIYAAEEYGVTVVG---VTLSEEQLAYAEKRIAARGLEDNVEV  126 (283)
T ss_pred             HHHHHHHHHhcCCCCC--------CEEEEeCCChhHHHHHHHHHcCCEEEE---eeCCHHHHHHHHHHHHHcCCCcccEE
Confidence            3447888888888765        68999999999999999987 665444   5677777665554    466522211


Q ss_pred             ccccCCCCCCCcccceEecccccccC
Q 019228          306 FASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                       -.+..+..++.||-|++...+-|..
T Consensus       127 -~l~d~rd~~e~fDrIvSvgmfEhvg  151 (283)
T COG2230         127 -RLQDYRDFEEPFDRIVSVGMFEHVG  151 (283)
T ss_pred             -EeccccccccccceeeehhhHHHhC
Confidence             1345666777799999998775543

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.16  E-value=3e-06  Score=76.58  Aligned_cols=73  Identities=29%  Similarity=0.431  Sum_probs=49.2

Q ss_pred             eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEecccccc
Q 019228          256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      +|||||||+|.++..+++..- ...+.+.|+++.+++.|.++    ++.  +.+...|..+.|+++ +||+|++..++.+
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~-~fD~I~~~~~l~~   79 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-TYDLVFGFEVIHH   79 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCC-CCCEeehHHHHHh
Confidence            699999999999998887520 01344567788888777664    332  222223444567764 8999999988865


Q ss_pred             c
Q 019228          330 W  330 (344)
Q Consensus       330 W  330 (344)
                      .
T Consensus        80 ~   80 (224)
T smart00828       80 I   80 (224)
T ss_pred             C
Confidence            5

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.14  E-value=1.3e-05  Score=73.98  Aligned_cols=73  Identities=21%  Similarity=0.276  Sum_probs=46.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHH----HHHHHcCCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~I----q~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .++||+|||.|--+.+|+++|..+..   .|.++..+    +.|.++++++.....|.....++ +.||+|+|+-++..-
T Consensus        32 g~~LDlgcG~GRNalyLA~~G~~VtA---vD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL  107 (192)
T PF03848_consen   32 GKALDLGCGEGRNALYLASQGFDVTA---VDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFL  107 (192)
T ss_dssp             SEEEEES-TTSHHHHHHHHTT-EEEE---EESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS
T ss_pred             CcEEEcCCCCcHHHHHHHHCCCeEEE---EECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccC
Confidence            58999999999999999999754333   34444333    35666788765554455556665 689999997666444


Q ss_pred             C
Q 019228          331 D  331 (344)
Q Consensus       331 ~  331 (344)
                      .
T Consensus       108 ~  108 (192)
T PF03848_consen  108 Q  108 (192)
T ss_dssp             -
T ss_pred             C
Confidence            3

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.13  E-value=1.4e-06  Score=84.18  Aligned_cols=70  Identities=26%  Similarity=0.371  Sum_probs=50.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCeEEe---------eccccCCCCCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIG---------SFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~---------~lda~rLPFpD~SFDlVhc  323 (344)
                      +.|||||||+|-++..|+..+.   ++++.|+++++|+.|.+.-  -|..-+         +.+.+.+   .+.||+|+|
T Consensus        91 ~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvc  164 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVC  164 (282)
T ss_pred             ceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceeee
Confidence            5799999999999999999875   4566899999999998762  111111         1112222   233999999


Q ss_pred             ccccccc
Q 019228          324 ARCGVDW  330 (344)
Q Consensus       324 s~~Li~W  330 (344)
                      +.++.|-
T Consensus       165 sevleHV  171 (282)
T KOG1270|consen  165 SEVLEHV  171 (282)
T ss_pred             HHHHHHH
Confidence            9999775

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.12  E-value=2.3e-06  Score=81.94  Aligned_cols=79  Identities=16%  Similarity=0.220  Sum_probs=63.0

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc---CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR---Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      ...++|||||.|....+|+.++|.  .+...|.+..|++.++..   ++....-+.|-+.|||.+++||+|+++..+ ||
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW  149 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HW  149 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hh
Confidence            357999999999999999999864  455578888888877654   344444556789999999999999999888 99


Q ss_pred             Ccccc
Q 019228          331 DQKGK  335 (344)
Q Consensus       331 ~~~~g  335 (344)
                      +.+=+
T Consensus       150 ~NdLP  154 (325)
T KOG2940|consen  150 TNDLP  154 (325)
T ss_pred             hccCc
Confidence            87643

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.10  E-value=1.2e-05  Score=73.36  Aligned_cols=86  Identities=20%  Similarity=0.182  Sum_probs=51.9

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccc
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFAS  308 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda  308 (344)
                      +..+.+.+....+        .+|||||||+|.+++.|++..-....+.+.|.++.+++.|+++    ++. +.+-..|+
T Consensus        66 ~~~~~~~l~~~~~--------~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~  137 (215)
T TIGR00080        66 VAMMTELLELKPG--------MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG  137 (215)
T ss_pred             HHHHHHHhCCCCc--------CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc
Confidence            4556666654332        5899999999999998887521101133356666777666543    432 22222234


Q ss_pred             cCCCCCCCcccceEecccc
Q 019228          309 KQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       309 ~rLPFpD~SFDlVhcs~~L  327 (344)
                      ...+...+.||+|++..+.
T Consensus       138 ~~~~~~~~~fD~Ii~~~~~  156 (215)
T TIGR00080       138 TQGWEPLAPYDRIYVTAAG  156 (215)
T ss_pred             ccCCcccCCCCEEEEcCCc
Confidence            4444456799999987544

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.06  E-value=1.3e-05  Score=72.97  Aligned_cols=74  Identities=19%  Similarity=0.323  Sum_probs=50.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCC-CCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLP-FpD~SFDlVhcs~~Li~  329 (344)
                      .+|||||||+|.++..+.+.+.   .+...|.++.+++.|.++    +....+...+...++ .+++.||+|+|..++.+
T Consensus        50 ~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~  126 (233)
T PRK05134         50 KRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH  126 (233)
T ss_pred             CeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence            4799999999999998888753   344567777777766654    333333333444444 45689999999887755


Q ss_pred             cC
Q 019228          330 WD  331 (344)
Q Consensus       330 W~  331 (344)
                      ..
T Consensus       127 ~~  128 (233)
T PRK05134        127 VP  128 (233)
T ss_pred             cC
Confidence            43

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.04  E-value=5.5e-06  Score=75.27  Aligned_cols=76  Identities=21%  Similarity=0.281  Sum_probs=52.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccc-cCCC--CCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFAS-KQLP--YPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda-~rLP--FpD~SFDlVhcs~~  326 (344)
                      .+|||+|||+|.++..|++..- ...+.+.|.++.+++.|.++    +++ +.+-..|+ +.++  +++++||+|++..+
T Consensus        42 ~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~  120 (202)
T PRK00121         42 PIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP  120 (202)
T ss_pred             CeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence            5899999999999998877521 12445567777777776643    332 33333345 5677  88999999999755


Q ss_pred             ccccCc
Q 019228          327 GVDWDQ  332 (344)
Q Consensus       327 Li~W~~  332 (344)
                      . +|..
T Consensus       121 ~-p~~~  125 (202)
T PRK00121        121 D-PWPK  125 (202)
T ss_pred             C-CCCC
Confidence            4 6754

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.04  E-value=1.2e-05  Score=80.80  Aligned_cols=100  Identities=17%  Similarity=0.210  Sum_probs=61.9

Q ss_pred             ceeeecCCCccc--cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHH
Q 019228          216 EQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL  293 (344)
Q Consensus       216 ~~~~FpGggt~F--~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~  293 (344)
                      ..+.|-.....|  ++.+.=-..+.+.++...        ..+|||+|||+|.++..++++.-. ..+...|.++.+++.
T Consensus       197 ~~~~~~~~~gVFs~~~LD~GtrllL~~lp~~~--------~~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~  267 (378)
T PRK15001        197 TDWTIHNHANVFSRTGLDIGARFFMQHLPENL--------EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVAS  267 (378)
T ss_pred             ceEEEEecCCccCCCCcChHHHHHHHhCCccc--------CCeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHH
Confidence            445554444455  355655667888887422        247999999999999999886321 244557788777777


Q ss_pred             HHHc----CC------CeEEeeccccCCCCCCCcccceEecccc
Q 019228          294 TLER----GL------PAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       294 A~eR----Gv------pa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      |++.    +.      .+..+++  .. .+++.+||+|+|+-..
T Consensus       268 A~~N~~~n~~~~~~~v~~~~~D~--l~-~~~~~~fDlIlsNPPf  308 (378)
T PRK15001        268 SRLNVETNMPEALDRCEFMINNA--LS-GVEPFRFNAVLCNPPF  308 (378)
T ss_pred             HHHHHHHcCcccCceEEEEEccc--cc-cCCCCCEEEEEECcCc
Confidence            7653    21      1222221  11 2455789999997443

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.03  E-value=8.1e-06  Score=74.28  Aligned_cols=69  Identities=19%  Similarity=0.281  Sum_probs=45.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .+|||+|||+|.++..++.+.- ...+.+.|.++.+++.|++    .++. +.+-..++..+++ +++||+|+|..
T Consensus        47 ~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         47 ERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             CeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence            5799999999998888775310 1234446777777665554    3442 3333335567777 88999999963

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.00  E-value=1.7e-05  Score=75.42  Aligned_cols=81  Identities=17%  Similarity=0.269  Sum_probs=55.8

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeec
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSF  306 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~l  306 (344)
                      ...++.|.+.+....+        .+|||||||+|.++..|+++..   .+.+.|.++.+++.+.++    .+.+..+  
T Consensus        28 ~~i~~~i~~~l~~~~~--------~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~--   94 (272)
T PRK00274         28 ENILDKIVDAAGPQPG--------DNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEG--   94 (272)
T ss_pred             HHHHHHHHHhcCCCCc--------CeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEC--
Confidence            3456677776654332        5799999999999999998743   345567778888877664    2333444  


Q ss_pred             cccCCCCCCCcccceEec
Q 019228          307 ASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs  324 (344)
                      |+..+++++-.+|.|+++
T Consensus        95 D~~~~~~~~~~~~~vv~N  112 (272)
T PRK00274         95 DALKVDLSELQPLKVVAN  112 (272)
T ss_pred             hhhcCCHHHcCcceEEEe
Confidence            566788776446888775

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.98  E-value=2.7e-05  Score=73.38  Aligned_cols=80  Identities=15%  Similarity=0.232  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-----CCeEEee
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGS  305 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-----vpa~~~~  305 (344)
                      ...++.|.+.+....        ..+|||||||+|.++..|+++..   .+.+.|.++.+++.+.++-     +.++.+ 
T Consensus        15 ~~~~~~iv~~~~~~~--------~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~-   82 (258)
T PRK14896         15 DRVVDRIVEYAEDTD--------GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEG-   82 (258)
T ss_pred             HHHHHHHHHhcCCCC--------cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEe-
Confidence            445777777765433        25899999999999999998743   3445677777877776542     223344 


Q ss_pred             ccccCCCCCCCcccceEecc
Q 019228          306 FASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~  325 (344)
                       |+..+++++  ||.|+++-
T Consensus        83 -D~~~~~~~~--~d~Vv~Nl   99 (258)
T PRK14896         83 -DALKVDLPE--FNKVVSNL   99 (258)
T ss_pred             -ccccCCchh--ceEEEEcC
Confidence             566777764  89999873

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.98  E-value=4.9e-05  Score=67.11  Aligned_cols=83  Identities=16%  Similarity=0.292  Sum_probs=52.7

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-e--E
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-A--M  302 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a--~  302 (344)
                      .+.-...|.+.+....        ..+|||+|||+|.++..++++... ..+...|.++..++.|++    .++. +  .
T Consensus        16 ~d~~t~lL~~~l~~~~--------~~~vLDlG~G~G~i~~~la~~~~~-~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~   86 (170)
T PF05175_consen   16 LDAGTRLLLDNLPKHK--------GGRVLDLGCGSGVISLALAKRGPD-AKVTAVDINPDALELAKRNAERNGLENVEVV   86 (170)
T ss_dssp             HHHHHHHHHHHHHHHT--------TCEEEEETSTTSHHHHHHHHTSTC-EEEEEEESBHHHHHHHHHHHHHTTCTTEEEE
T ss_pred             CCHHHHHHHHHHhhcc--------CCeEEEecCChHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhcCccccccc
Confidence            3333445566555321        258999999999999999987432 134556777777776654    2444 3  3


Q ss_pred             EeeccccCCCCCCCcccceEec
Q 019228          303 IGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       303 ~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+++   --+++++.||+|+|+
T Consensus        87 ~~d~---~~~~~~~~fD~Iv~N  105 (170)
T PF05175_consen   87 QSDL---FEALPDGKFDLIVSN  105 (170)
T ss_dssp             ESST---TTTCCTTCEEEEEE-
T ss_pred             cccc---cccccccceeEEEEc
Confidence            3332   124558999999997

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.97  E-value=7.6e-06  Score=75.14  Aligned_cols=70  Identities=10%  Similarity=0.099  Sum_probs=43.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCC--------CCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL--------PYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rL--------PFpD~SFDlVhcs~~  326 (344)
                      .+|||+|||||.++..++++....-.+.+.|+++ +..   ..++.+..+++  ..+        ++++++||+|+|..+
T Consensus        53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~---~~~v~~i~~D~--~~~~~~~~i~~~~~~~~~D~V~S~~~  126 (209)
T PRK11188         53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDP---IVGVDFLQGDF--RDELVLKALLERVGDSKVQVVMSDMA  126 (209)
T ss_pred             CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccC---CCCcEEEecCC--CChHHHHHHHHHhCCCCCCEEecCCC
Confidence            5899999999999998887621101222233333 111   12455566653  443        478899999999765


Q ss_pred             ccccC
Q 019228          327 GVDWD  331 (344)
Q Consensus       327 Li~W~  331 (344)
                      . +|+
T Consensus       127 ~-~~~  130 (209)
T PRK11188        127 P-NMS  130 (209)
T ss_pred             C-ccC
Confidence            5 554

>PRK14967 putative methyltransferase; Provisional

Probab=97.97  E-value=4e-05  Score=70.26  Aligned_cols=67  Identities=15%  Similarity=0.163  Sum_probs=44.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++..+.  ..+.+.|.++.+++.|++.    ++.+.+...|... ++++++||+|+|+
T Consensus        38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n  108 (223)
T PRK14967         38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSN  108 (223)
T ss_pred             CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEEC
Confidence            4799999999999988887642  1345567777777655542    4433333233322 4678899999996

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.96  E-value=2.5e-05  Score=74.77  Aligned_cols=69  Identities=10%  Similarity=0.112  Sum_probs=45.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .+|||+|||+|.++..++..+.  -.+.+.|.++.+++.|++.    ++...+.......+++.++.||+|+|+.
T Consensus       161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~  233 (288)
T TIGR00406       161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANI  233 (288)
T ss_pred             CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEec
Confidence            5899999999999888776643  1345567777777776654    3332222211223566788999999963

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.95  E-value=3.8e-05  Score=75.95  Aligned_cols=89  Identities=19%  Similarity=0.237  Sum_probs=56.5

Q ss_pred             cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCeEE
Q 019228          228 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMI  303 (344)
Q Consensus       228 ~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~  303 (344)
                      ++.+.--..+.+.++...        ..+|||+|||+|.++..++++.-. ..+...|+++.+++.|++    .++...+
T Consensus       179 ~~lD~gt~lLl~~l~~~~--------~g~VLDlGCG~G~ls~~la~~~p~-~~v~~vDis~~Al~~A~~nl~~n~l~~~~  249 (342)
T PRK09489        179 DGLDVGSQLLLSTLTPHT--------KGKVLDVGCGAGVLSAVLARHSPK-IRLTLSDVSAAALESSRATLAANGLEGEV  249 (342)
T ss_pred             CCCCHHHHHHHHhccccC--------CCeEEEeccCcCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEE
Confidence            355555566667665321        237999999999999999876321 234556777777766654    2444333


Q ss_pred             eeccccCCCCCCCcccceEecccc
Q 019228          304 GSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      ...|.  +...++.||+|+|+-.+
T Consensus       250 ~~~D~--~~~~~~~fDlIvsNPPF  271 (342)
T PRK09489        250 FASNV--FSDIKGRFDMIISNPPF  271 (342)
T ss_pred             EEccc--ccccCCCccEEEECCCc
Confidence            22222  33457899999998655

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.94  E-value=3.8e-05  Score=71.10  Aligned_cols=73  Identities=18%  Similarity=0.058  Sum_probs=49.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHH-HHcCC------------------CeEEeeccccCCCCC-
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT-LERGL------------------PAMIGSFASKQLPYP-  314 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A-~eRGv------------------pa~~~~lda~rLPFp-  314 (344)
                      .+|||+|||.|..+.+|++++-   .+.+.|+++..++.+ .+.++                  .+.+++  ...++.. 
T Consensus        36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D--~~~~~~~~  110 (213)
T TIGR03840        36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGD--FFALTAAD  110 (213)
T ss_pred             CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEcc--CCCCCccc
Confidence            4899999999999999999864   334467777777653 33333                  223443  3445432 


Q ss_pred             CCcccceEecccccccCc
Q 019228          315 SLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       315 D~SFDlVhcs~~Li~W~~  332 (344)
                      ...||.|+-..++++..+
T Consensus       111 ~~~fD~i~D~~~~~~l~~  128 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPE  128 (213)
T ss_pred             CCCcCEEEechhhccCCH
Confidence            467999998887766543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.93  E-value=4.5e-05  Score=61.42  Aligned_cols=72  Identities=18%  Similarity=0.135  Sum_probs=46.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccC-CCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQ-LPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~r-LPFpD~SFDlVhcs~~L  327 (344)
                      .+|||+|||+|.++..++++.-. ..+.+.|.++.+++.|++.    +++ +.+-..+... +++..++||.|++..+.
T Consensus        21 ~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~   98 (124)
T TIGR02469        21 DVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG   98 (124)
T ss_pred             CEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence            48999999999999999876211 2345567777777665432    332 2222223333 45556799999997643

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.91  E-value=4.4e-05  Score=67.36  Aligned_cols=71  Identities=18%  Similarity=0.135  Sum_probs=47.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||+|||+|.++..+++++.   .+.+.|.++.+++.|+++    ++...+...|....  +.++||+|+|+...++.
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Vi~n~p~~~~   95 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG--VRGKFDVILFNPPYLPL   95 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc--cCCcccEEEECCCCCCC
Confidence            4799999999999999988754   345578888887776653    33332222233333  35699999998655433

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.90  E-value=3.4e-05  Score=70.29  Aligned_cols=85  Identities=19%  Similarity=0.264  Sum_probs=53.8

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEE
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMI  303 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~  303 (344)
                      .....++.+.+.++.         ...+|||+|||+|.++..+++.... ..+.+.|.++.+++.|++.    ++. +.+
T Consensus        72 ~~~~l~~~~l~~~~~---------~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~  141 (251)
T TIGR03534        72 DTEELVEAALERLKK---------GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTF  141 (251)
T ss_pred             ChHHHHHHHHHhccc---------CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEE
Confidence            344556666665542         1247999999999999999875211 1344567777777766543    443 222


Q ss_pred             eeccccCCCCCCCcccceEec
Q 019228          304 GSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhcs  324 (344)
                      -..|... ++++++||+|+|+
T Consensus       142 ~~~d~~~-~~~~~~fD~Vi~n  161 (251)
T TIGR03534       142 LQSDWFE-PLPGGKFDLIVSN  161 (251)
T ss_pred             EECchhc-cCcCCceeEEEEC
Confidence            2223333 6778999999995

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.90  E-value=2e-05  Score=70.99  Aligned_cols=69  Identities=22%  Similarity=0.277  Sum_probs=42.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .+|||||||+|.++..|+...-. ..+.+.|.++.+++.+.+    .++. +.+-..++..++ ++++||+|+|..
T Consensus        44 ~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~  117 (181)
T TIGR00138        44 KKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA  117 (181)
T ss_pred             CeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh
Confidence            58999999999998887653210 123445666666554432    3442 323223455664 468999999864

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.89  E-value=9.3e-06  Score=65.61  Aligned_cols=68  Identities=24%  Similarity=0.424  Sum_probs=46.9

Q ss_pred             eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCC--CCCCcccceEecc
Q 019228          256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCAR  325 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLP--FpD~SFDlVhcs~  325 (344)
                      +|||+|||+|.+...++++.  ...+.+.|+++..++.|++.    ++  ++.+...|...++  +++++||+|+++-
T Consensus         3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np   78 (117)
T PF13659_consen    3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP   78 (117)
T ss_dssp             EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred             EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence            79999999999999888775  23556678888777776653    22  2333333455554  8999999999973

...

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.85  E-value=2.6e-05  Score=70.13  Aligned_cols=73  Identities=21%  Similarity=0.295  Sum_probs=50.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC-CeEEeeccccCCCCC-CCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP-SLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv-pa~~~~lda~rLPFp-D~SFDlVhcs~~Li  328 (344)
                      .+|||+|||+|.++..+++.+..   +...|.++.+++.+.++    ++ ...+...+...++.+ .++||+|+|..++.
T Consensus        47 ~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~  123 (224)
T TIGR01983        47 LRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE  123 (224)
T ss_pred             CeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence            47999999999999988876532   44567777777666553    33 233433455566665 38999999987775


Q ss_pred             cc
Q 019228          329 DW  330 (344)
Q Consensus       329 ~W  330 (344)
                      +.
T Consensus       124 ~~  125 (224)
T TIGR01983       124 HV  125 (224)
T ss_pred             hC
Confidence            44

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.84  E-value=3.4e-05  Score=78.11  Aligned_cols=84  Identities=19%  Similarity=0.283  Sum_probs=56.5

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC---CeE
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAM  302 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv---pa~  302 (344)
                      .+..++.+.+++....+        .+|||+|||+|.++..|+++..   .+.+.|.++.+++.|.+.    ++   .+.
T Consensus       282 ~e~l~~~vl~~l~~~~~--------~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~  350 (443)
T PRK13168        282 NQKMVARALEWLDPQPG--------DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFY  350 (443)
T ss_pred             HHHHHHHHHHHhcCCCC--------CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Confidence            35556667776654322        5899999999999999988742   445577888887776643    33   344


Q ss_pred             Eeeccc--cCCCCCCCcccceEec
Q 019228          303 IGSFAS--KQLPYPSLSFDMLHCA  324 (344)
Q Consensus       303 ~~~lda--~rLPFpD~SFDlVhcs  324 (344)
                      .+++..  ..+|+++++||+|++.
T Consensus       351 ~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        351 HANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             EeChHHhhhhhhhhcCCCCEEEEC
Confidence            454321  2356778899999974

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.83  E-value=5.1e-05  Score=74.43  Aligned_cols=99  Identities=20%  Similarity=0.377  Sum_probs=66.1

Q ss_pred             cceeeecCCCccc--cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHH
Q 019228          215 EEQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ  292 (344)
Q Consensus       215 g~~~~FpGggt~F--~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq  292 (344)
                      +.-++|-...-+|  ++++.=-+.|.+.++...+        .+|||+|||.|.++..|++++-. ..++..|++...++
T Consensus       126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~--------~~vlDlGCG~Gvlg~~la~~~p~-~~vtmvDvn~~Av~  196 (300)
T COG2813         126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLG--------GKVLDLGCGYGVLGLVLAKKSPQ-AKLTLVDVNARAVE  196 (300)
T ss_pred             cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCC--------CcEEEeCCCccHHHHHHHHhCCC-CeEEEEecCHHHHH
Confidence            3444554443366  5778778889999985432        37999999999999999987531 24555677777776


Q ss_pred             HHHHc----CCCe--EEeeccccCCCCCCCcccceEecc
Q 019228          293 LTLER----GLPA--MIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       293 ~A~eR----Gvpa--~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .|++-    ++..  ++.  +..-.+-++ .||+|+|+-
T Consensus       197 ~ar~Nl~~N~~~~~~v~~--s~~~~~v~~-kfd~IisNP  232 (300)
T COG2813         197 SARKNLAANGVENTEVWA--SNLYEPVEG-KFDLIISNP  232 (300)
T ss_pred             HHHHhHHHcCCCccEEEE--ecccccccc-cccEEEeCC
Confidence            66542    3432  222  123456666 999999973

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.82  E-value=2.5e-05  Score=70.36  Aligned_cols=76  Identities=20%  Similarity=0.245  Sum_probs=48.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC---CCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP---YPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP---FpD~SFDlVhcs~~  326 (344)
                      .++||||||+|.++..|+++... ..+.+.|.++.+++.|.++    ++. +.+...|+..++   +++++||.|++...
T Consensus        18 ~~ilDiGcG~G~~~~~la~~~p~-~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p   96 (194)
T TIGR00091        18 PLHLEIGCGKGRFLIDMAKQNPD-KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP   96 (194)
T ss_pred             ceEEEeCCCccHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence            47999999999999998876211 1334456667666665442    332 222223444444   67789999998754


Q ss_pred             ccccCc
Q 019228          327 GVDWDQ  332 (344)
Q Consensus       327 Li~W~~  332 (344)
                       .+|..
T Consensus        97 -dpw~k  101 (194)
T TIGR00091        97 -DPWPK  101 (194)
T ss_pred             -CcCCC
Confidence             47754

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=97.81  E-value=5.9e-05  Score=72.13  Aligned_cols=75  Identities=17%  Similarity=0.259  Sum_probs=47.9

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC----eEEeeccccCCCCCCCcccceEecc
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP----AMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp----a~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      ..++||||||+|.++..++++.-. ..+...|. +.+++.|++    .++.    ++.++  ....++|+  +|+|++++
T Consensus       150 ~~~vlDiG~G~G~~~~~~~~~~p~-~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d--~~~~~~~~--~D~v~~~~  223 (306)
T TIGR02716       150 VKKMIDVGGGIGDISAAMLKHFPE-LDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVD--IYKESYPE--ADAVLFCR  223 (306)
T ss_pred             CCEEEEeCCchhHHHHHHHHHCCC-CEEEEEec-HHHHHHHHHHHHhCCccceEEEEecC--ccCCCCCC--CCEEEeEh
Confidence            368999999999999998876210 12223343 345555443    3432    33343  44456664  69999999


Q ss_pred             cccccCccc
Q 019228          326 CGVDWDQKG  334 (344)
Q Consensus       326 ~Li~W~~~~  334 (344)
                      ++++|....
T Consensus       224 ~lh~~~~~~  232 (306)
T TIGR02716       224 ILYSANEQL  232 (306)
T ss_pred             hhhcCChHH
Confidence            999997653

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN03075 nicotianamine synthase; Provisional

Probab=97.77  E-value=3.3e-05  Score=75.55  Aligned_cols=82  Identities=15%  Similarity=0.179  Sum_probs=52.2

Q ss_pred             CCeEEEECCccchhhHHHhh-CCceEEEcccccccHHHHHHHHHc-----CCC--eEEeeccccCCCCCCCcccceEecc
Q 019228          254 VRTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER-----GLP--AMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Lae-r~V~~~sIa~~D~sea~Iq~A~eR-----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .++|||||||.|-+++.++. +-.....+.+.|.++++++.|++.     ++.  +.+...|+..++-..+.||+|+|. 
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-  202 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-  202 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence            47899999998866554332 211222456678888887777653     221  333334455554346789999999 


Q ss_pred             cccccCccccc
Q 019228          326 CGVDWDQKGKC  336 (344)
Q Consensus       326 ~Li~W~~~~g~  336 (344)
                      ++++|...+..
T Consensus       203 ALi~~dk~~k~  213 (296)
T PLN03075        203 ALVGMDKEEKV  213 (296)
T ss_pred             cccccccccHH
Confidence            99999765443

>TIGR03438 probable methyltransferase

Probab=97.76  E-value=5e-05  Score=73.20  Aligned_cols=79  Identities=10%  Similarity=0.095  Sum_probs=48.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc------CCCe--EEeeccccCCCCCCCc----ccceE
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPA--MIGSFASKQLPYPSLS----FDMLH  322 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR------Gvpa--~~~~lda~rLPFpD~S----FDlVh  322 (344)
                      .+|||+|||||.++..|+++......+.+.|++++|++.|.++      ++.+  +.+++. ..++++...    ..+++
T Consensus        65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~-~~~~~~~~~~~~~~~~~~  143 (301)
T TIGR03438        65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFT-QPLALPPEPAAGRRLGFF  143 (301)
T ss_pred             CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEccc-chhhhhcccccCCeEEEE
Confidence            4799999999999999887632123456688999988877664      2332  456552 224444433    33444


Q ss_pred             ecccccccCccc
Q 019228          323 CARCGVDWDQKG  334 (344)
Q Consensus       323 cs~~Li~W~~~~  334 (344)
                      +..++.++.+.+
T Consensus       144 ~gs~~~~~~~~e  155 (301)
T TIGR03438       144 PGSTIGNFTPEE  155 (301)
T ss_pred             ecccccCCCHHH
Confidence            444554444433

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.76  E-value=0.00011  Score=69.24  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=44.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeE-Eee-----ccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM-IGS-----FASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~-~~~-----lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .++||+|||||.|+..|+++++.  .+.+.|++..|+...+.....+. +..     ++.+.++..-..||+++++.++
T Consensus        77 ~~vlDiG~gtG~~t~~l~~~ga~--~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~  153 (228)
T TIGR00478        77 KIVLDVGSSTGGFTDCALQKGAK--EVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS  153 (228)
T ss_pred             CEEEEcccCCCHHHHHHHHcCCC--EEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence            58999999999999999998542  34556777776655333332211 111     1222333333589999988664

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.75  E-value=8.8e-05  Score=72.18  Aligned_cols=67  Identities=19%  Similarity=0.175  Sum_probs=46.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||||++...++..+.   .+.+.|+++.|++.|++.    ++. +.+...|+.++|+++++||+|+|.
T Consensus       184 ~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~d  255 (329)
T TIGR01177       184 DRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATD  255 (329)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEEC
Confidence            4799999999999766555443   334467777776655432    443 233334677899999999999995

This family is found exclusively in the Archaea.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.75  E-value=2.6e-05  Score=80.90  Aligned_cols=80  Identities=19%  Similarity=0.417  Sum_probs=65.6

Q ss_pred             CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .+|.|+|...|.|.||+.|.+..|-+|.+.+. ....-+...-+||+--++.+- -+.+|+-.+|||+||+...+-.|..
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~lfs~~~~  442 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADGLFSLYKD  442 (506)
T ss_pred             ceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchhheehhhhhhhhcc
Confidence            68999999999999999999999999999887 444556677899964444443 4688999999999999998877765


Q ss_pred             cc
Q 019228          333 KG  334 (344)
Q Consensus       333 ~~  334 (344)
                      .=
T Consensus       443 rC  444 (506)
T PF03141_consen  443 RC  444 (506)
T ss_pred             cc
Confidence            53

; GO: 0008168 methyltransferase activity

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.74  E-value=0.00012  Score=68.12  Aligned_cols=74  Identities=18%  Similarity=0.004  Sum_probs=50.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHH-HHcCCCe----------------EEeeccccCCCCC-CC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT-LERGLPA----------------MIGSFASKQLPYP-SL  316 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A-~eRGvpa----------------~~~~lda~rLPFp-D~  316 (344)
                      .+|||+|||.|..+.+|++++.   .+.+.|+++..++.+ .++++..                .+-..|...++.. ..
T Consensus        39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            4899999999999999999865   344567887777754 4455431                1122234455433 36


Q ss_pred             cccceEecccccccC
Q 019228          317 SFDMLHCARCGVDWD  331 (344)
Q Consensus       317 SFDlVhcs~~Li~W~  331 (344)
                      .||+|+-..++++..
T Consensus       116 ~fd~v~D~~~~~~l~  130 (218)
T PRK13255        116 DVDAVYDRAALIALP  130 (218)
T ss_pred             CeeEEEehHhHhhCC
Confidence            899999888776654

>PHA03411 putative methyltransferase; Provisional

Probab=97.71  E-value=9e-05  Score=72.06  Aligned_cols=71  Identities=11%  Similarity=0.059  Sum_probs=49.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCeEEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||+|||+|.++..++.+.- ...+.+.|+++.+++.|+++-  +.+..++  ...++ .+.+||+|++.-...+
T Consensus        66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D--~~e~~-~~~kFDlIIsNPPF~~  138 (279)
T PHA03411         66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSD--VFEFE-SNEKFDVVISNPPFGK  138 (279)
T ss_pred             CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECc--hhhhc-ccCCCcEEEEcCCccc
Confidence            4799999999999888876421 124556788888998887752  3344444  44443 3578999999766654

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.71  E-value=0.00014  Score=64.53  Aligned_cols=69  Identities=16%  Similarity=0.188  Sum_probs=42.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      .+|||||||+|.++..++++.- ...+.+.|.++.+++.|+++    ++. +.+...+. ..++ .++||+|++...
T Consensus        33 ~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~-~~~~-~~~~D~v~~~~~  106 (187)
T PRK08287         33 KHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA-PIEL-PGKADAIFIGGS  106 (187)
T ss_pred             CEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc-hhhc-CcCCCEEEECCC
Confidence            5899999999999998877521 12344567777777666542    332 22222222 2344 368999998754

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.70  E-value=8.5e-05  Score=71.97  Aligned_cols=96  Identities=18%  Similarity=0.276  Sum_probs=57.9

Q ss_pred             eeeecCCCcccc----chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHH
Q 019228          217 QISFRSASLIFD----GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ  292 (344)
Q Consensus       217 ~~~FpGggt~F~----g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq  292 (344)
                      .+.++. +.||.    .++..++.+.+++...        ...+|||+|||+|.++..|++++.   .+.+.|.++.+++
T Consensus       142 ~~~~~~-~sF~Q~n~~~~~~l~~~v~~~l~~~--------~~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~  209 (315)
T PRK03522        142 PLFIRP-QSFFQTNPAVAAQLYATARDWVREL--------PPRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIA  209 (315)
T ss_pred             EEEECC-CeeeecCHHHHHHHHHHHHHHHHhc--------CCCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHH
Confidence            344432 44662    2344555566665421        125899999999999999998753   3445677777776


Q ss_pred             HHHHc----CCC-eEEeeccccCCCC-CCCcccceEec
Q 019228          293 LTLER----GLP-AMIGSFASKQLPY-PSLSFDMLHCA  324 (344)
Q Consensus       293 ~A~eR----Gvp-a~~~~lda~rLPF-pD~SFDlVhcs  324 (344)
                      .|++.    ++. +.+-..|+..++. .++.||+|++.
T Consensus       210 ~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        210 CAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             HHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            66543    443 2232234444432 35689999976

>PRK14968 putative methyltransferase; Provisional

Probab=97.69  E-value=0.00014  Score=63.15  Aligned_cols=67  Identities=12%  Similarity=0.154  Sum_probs=46.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----C-----CCeEEeeccccCCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-----LPAMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----G-----vpa~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .+|||+|||+|.++..++.++.   .+.+.|.++.+++.+++.    +     +.+..+++  . -++++++||+|+++.
T Consensus        25 ~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~--~-~~~~~~~~d~vi~n~   98 (188)
T PRK14968         25 DRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL--F-EPFRGDKFDVILFNP   98 (188)
T ss_pred             CEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc--c-ccccccCceEEEECC
Confidence            5799999999999999988743   445567777777766443    2     33333432  2 256777999999864


Q ss_pred             cc
Q 019228          326 CG  327 (344)
Q Consensus       326 ~L  327 (344)
                      -.
T Consensus        99 p~  100 (188)
T PRK14968         99 PY  100 (188)
T ss_pred             Cc
Confidence            43

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.67  E-value=0.00017  Score=67.50  Aligned_cols=81  Identities=15%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---CCeEEeecc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA  307 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~ld  307 (344)
                      ...++.|.+.+....        ..+|||||||+|.++..|+++...   +...|.++.+++.+.++-   -.+.+...|
T Consensus        15 ~~i~~~i~~~~~~~~--------~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D   83 (253)
T TIGR00755        15 ESVIQKIVEAANVLE--------GDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKLLSLYERLEVIEGD   83 (253)
T ss_pred             HHHHHHHHHhcCCCC--------cCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHHhCcCCcEEEEECc
Confidence            344666666665432        358999999999999999987432   344567777777666541   123333345


Q ss_pred             ccCCCCCCCccc---ceEec
Q 019228          308 SKQLPYPSLSFD---MLHCA  324 (344)
Q Consensus       308 a~rLPFpD~SFD---lVhcs  324 (344)
                      +..+|++  +||   +|+++
T Consensus        84 ~~~~~~~--~~d~~~~vvsN  101 (253)
T TIGR00755        84 ALKVDLP--DFPKQLKVVSN  101 (253)
T ss_pred             hhcCChh--HcCCcceEEEc
Confidence            6777876  566   66665

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.66  E-value=0.00011  Score=74.35  Aligned_cols=76  Identities=18%  Similarity=0.239  Sum_probs=48.4

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHH----HHcCCC-eEEeeccccCC--CCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-AMIGSFASKQL--PYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A----~eRGvp-a~~~~lda~rL--PFpD~SFDlVhcs~~L  327 (344)
                      ..+||||||+|.++..++.+.-. ..+.+.|++..+++.|    .+.++. +.+-..|+..+  +|++++||.|++... 
T Consensus       124 p~vLEIGcGsG~~ll~lA~~~P~-~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP-  201 (390)
T PRK14121        124 KILIEIGFGSGRHLLYQAKNNPN-KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP-  201 (390)
T ss_pred             CeEEEEcCcccHHHHHHHHhCCC-CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-
Confidence            47999999999999999876211 1223345555554443    334553 22223345444  689999999998744 


Q ss_pred             cccCc
Q 019228          328 VDWDQ  332 (344)
Q Consensus       328 i~W~~  332 (344)
                      .+|..
T Consensus       202 dPW~K  206 (390)
T PRK14121        202 VPWDK  206 (390)
T ss_pred             CCccc
Confidence            58854

>PHA03412 putative methyltransferase; Provisional

Probab=97.65  E-value=5.8e-05  Score=72.00  Aligned_cols=67  Identities=13%  Similarity=0.106  Sum_probs=46.5

Q ss_pred             CeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHcC--CCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++++-  .....+.+.|+++.+++.|++..  +++..+  |....++ +++||+|+|+
T Consensus        51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~--D~~~~~~-~~~FDlIIsN  121 (241)
T PHA03412         51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINA--DALTTEF-DTLFDMAISN  121 (241)
T ss_pred             CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEc--chhcccc-cCCccEEEEC
Confidence            489999999999998876531  01125666788888888887553  333444  4444554 6799999997

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.65  E-value=0.00015  Score=71.47  Aligned_cols=73  Identities=14%  Similarity=0.035  Sum_probs=46.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.+++.+++..-..-.+...|.++.+++.|++    .++. +.+...|+...+.+.+.||+|++...+
T Consensus        82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~  159 (322)
T PRK13943         82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV  159 (322)
T ss_pred             CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence            589999999999999888741100012335677777766654    2442 222233455666666789999996443

>PRK04266 fibrillarin; Provisional

Probab=97.65  E-value=0.00012  Score=68.43  Aligned_cols=69  Identities=12%  Similarity=0.058  Sum_probs=41.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHH----HHHc-CCCeEEeecccc--CCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLER-GLPAMIGSFASK--QLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~----A~eR-Gvpa~~~~lda~--rLPFpD~SFDlVhcs~  325 (344)
                      .+|||+|||+|.++..|++.--. -.+.+.|.++.|++.    |.++ ++....+++...  ..+++ ++||+|++..
T Consensus        74 ~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~  149 (226)
T PRK04266         74 SKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDV  149 (226)
T ss_pred             CEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECC
Confidence            58999999999999999875211 134445777766653    3333 344455543210  12233 5699999753

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.62  E-value=0.00023  Score=64.46  Aligned_cols=70  Identities=19%  Similarity=0.085  Sum_probs=43.4

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..|++..-   .+...|.++.+++.|.++    ++. +.+...|......+.++||+|++..+.
T Consensus        80 ~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  154 (212)
T PRK00312         80 DRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA  154 (212)
T ss_pred             CEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence            5799999999999887776531   233456667777666553    332 222222222221235899999997654

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.60  E-value=0.00014  Score=67.62  Aligned_cols=66  Identities=20%  Similarity=0.369  Sum_probs=44.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc---C----CCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G----LPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR---G----vpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++.... ...+.+.|.++.+++.|++.   .    +.+..+++   .-|+++++||+|+|.
T Consensus       110 ~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~n  182 (275)
T PRK09328        110 LRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSN  182 (275)
T ss_pred             CEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEEC
Confidence            4799999999999998887531 12345567787777777654   1    22233332   224557899999995

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.59  E-value=0.00013  Score=54.37  Aligned_cols=72  Identities=21%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH---cC--CCeEEeeccccCCC-CCCCcccceEecccccc
Q 019228          256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE---RG--LPAMIGSFASKQLP-YPSLSFDMLHCARCGVD  329 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e---RG--vpa~~~~lda~rLP-FpD~SFDlVhcs~~Li~  329 (344)
                      ++||+|||+|.++..+++..  ...+...|.++.+++.+.+   ..  ....+-..+....+ ++.+.||+|++..++..
T Consensus         1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence            48999999999998888732  1244556777777666651   11  11222222333333 36788999999987754

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK04148 hypothetical protein; Provisional

Probab=97.58  E-value=0.00021  Score=62.64  Aligned_cols=68  Identities=13%  Similarity=0.188  Sum_probs=51.2

Q ss_pred             CeEEEECCccch-hhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCC-CCcccceEecccc
Q 019228          255 RTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGs-faa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFp-D~SFDlVhcs~~L  327 (344)
                      .++||||||+|. ++..|.+.+.   .+.+.|.++..++.|++.++.++.+++-  +-.+. -..+|+|.+.+.-
T Consensus        18 ~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf--~p~~~~y~~a~liysirpp   87 (134)
T PRK04148         18 KKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLF--NPNLEIYKNAKLIYSIRPP   87 (134)
T ss_pred             CEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCC--CCCHHHHhcCCEEEEeCCC
Confidence            579999999995 8889998865   3445788888899999999988888752  22222 3568888887653

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.57  E-value=0.00018  Score=70.65  Aligned_cols=78  Identities=18%  Similarity=0.274  Sum_probs=47.6

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCe--EEeecc
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPA--MIGSFA  307 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa--~~~~ld  307 (344)
                      +..+.+++.          ..++|||+|||+|-++...+..++.  .+.+.|+.+-.++.|++    .+++.  ....  
T Consensus       153 L~~Le~~~~----------~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~--  218 (300)
T COG2264         153 LEALEKLLK----------KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKG--  218 (300)
T ss_pred             HHHHHHhhc----------CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhccc--
Confidence            666666554          2368999999999888776665432  22334555555555544    35652  2221  


Q ss_pred             ccCCCCCC-CcccceEecc
Q 019228          308 SKQLPYPS-LSFDMLHCAR  325 (344)
Q Consensus       308 a~rLPFpD-~SFDlVhcs~  325 (344)
                      ...+.++. ..||+|+|+-
T Consensus       219 ~~~~~~~~~~~~DvIVANI  237 (300)
T COG2264         219 FLLLEVPENGPFDVIVANI  237 (300)
T ss_pred             ccchhhcccCcccEEEehh
Confidence            12445666 4999999973

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.56  E-value=9e-05  Score=69.37  Aligned_cols=62  Identities=23%  Similarity=0.355  Sum_probs=42.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++..+..  .+.+.|.++.+++.|++.    ++..      ...++..+.+||+|+|+
T Consensus       121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~------~~~~~~~~~~fD~Vvan  186 (250)
T PRK00517        121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVEL------NVYLPQGDLKADVIVAN  186 (250)
T ss_pred             CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCc------eEEEccCCCCcCEEEEc
Confidence            58999999999988877776542  345578888888777654    3311      11233334489999986

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.56  E-value=0.00032  Score=71.80  Aligned_cols=68  Identities=15%  Similarity=0.242  Sum_probs=43.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCC-CCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYP-SLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFp-D~SFDlVhcs~  325 (344)
                      .+|||+|||+|.++..|+.+.. ...+.+.|.++.+++.|++.    +..  +..+++  ....++ +++||+|+|+-
T Consensus       253 ~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl--~e~~l~~~~~FDLIVSNP  327 (423)
T PRK14966        253 GRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGARVEFAHGSW--FDTDMPSEGKWDIIVSNP  327 (423)
T ss_pred             CEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcch--hccccccCCCccEEEECC
Confidence            3799999999999988875411 11334567777887776653    333  334443  222232 46899999963

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.51  E-value=0.00012  Score=69.32  Aligned_cols=69  Identities=16%  Similarity=0.229  Sum_probs=48.7

Q ss_pred             eEEEECCccchhhHHHhh-CCceEEEcccccccHHHHHHHHHc-----CCCeE-EeeccccCCC-CCCCcccceEecccc
Q 019228          256 TILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER-----GLPAM-IGSFASKQLP-YPSLSFDMLHCARCG  327 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Lae-r~V~~~sIa~~D~sea~Iq~A~eR-----Gvpa~-~~~lda~rLP-FpD~SFDlVhcs~~L  327 (344)
                      .+|.||||||.--.++-. .+.   +++..|.++.|.++|.++     ...+. +-++++++|| .+|.|+|+|+|..||
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~---svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL  155 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPIN---SVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL  155 (252)
T ss_pred             ceEEecccCCCCcccccCCCCc---eEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence            589999999976665543 333   445567777776665543     22222 3445688999 999999999999877

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.51  E-value=0.00026  Score=71.54  Aligned_cols=68  Identities=16%  Similarity=0.213  Sum_probs=46.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCC--CCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLP--FpD~SFDlVhc  323 (344)
                      .+|||+|||+|..+..++++.-. ..+.+.|.++.+++.++++    |+...+...|+..++  +++++||.|++
T Consensus       246 ~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~  319 (427)
T PRK10901        246 ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILL  319 (427)
T ss_pred             CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEE
Confidence            57999999999999998876311 2345568888777666543    444333334555554  45789999993

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.48  E-value=0.00014  Score=69.72  Aligned_cols=70  Identities=20%  Similarity=0.303  Sum_probs=46.3

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--------CCCeEEeeccccCCCCCCCcccceEec
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------GLPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--------Gvpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      ..+|||+|||+|..+..|+++--. ..|.+.++.+.+.++|.+-        .+.+..+|+..-.-++.-.+||+|+|+
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N  122 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN  122 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence            468999999999999999887211 2455567777777777542        233444544222223444589999996

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.46  E-value=0.00037  Score=67.73  Aligned_cols=79  Identities=20%  Similarity=0.253  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----C----CCeE
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G----LPAM  302 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----G----vpa~  302 (344)
                      ...++.|.+.+....+        .+|||||||+|.++..|+++..   .+.+.|+++.+++.+.++    +    +.++
T Consensus        22 ~~i~~~Iv~~~~~~~~--------~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii   90 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPT--------DTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVI   90 (294)
T ss_pred             HHHHHHHHHhcCCCCc--------CEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence            4457777777654332        5799999999999999988743   234456777777666543    2    2334


Q ss_pred             EeeccccCCCCCCCcccceEec
Q 019228          303 IGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       303 ~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+  |+...++  ..||.|+++
T Consensus        91 ~~--Dal~~~~--~~~d~VvaN  108 (294)
T PTZ00338         91 EG--DALKTEF--PYFDVCVAN  108 (294)
T ss_pred             EC--CHhhhcc--cccCEEEec
Confidence            44  4444444  468988874

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.44  E-value=0.00023  Score=68.40  Aligned_cols=66  Identities=15%  Similarity=0.209  Sum_probs=44.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC----eEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP----AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++.+.- ...+.+.|+++.+++.|++.    ++.    +..+++  . -++++++||+|+|+
T Consensus       123 ~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~--~-~~~~~~~fD~Iv~N  196 (284)
T TIGR03533       123 KRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL--F-AALPGRKYDLIVSN  196 (284)
T ss_pred             CEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--h-hccCCCCccEEEEC
Confidence            5799999999999999987521 01344567777777766543    442    233432  1 14567789999996

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.37  E-value=0.00086  Score=63.36  Aligned_cols=100  Identities=19%  Similarity=0.250  Sum_probs=56.9

Q ss_pred             cceeeecCCCcccc--chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHH
Q 019228          215 EEQISFRSASLIFD--GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ  292 (344)
Q Consensus       215 g~~~~FpGggt~F~--g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq  292 (344)
                      |-.+..+. +.+++  ..+..++.+.+.+....       ...+|||+|||+|.++..++++.- ...+.+.|.++.+++
T Consensus        54 g~~~~v~~-~vf~pr~~Te~Lv~~~l~~~~~~~-------~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~  124 (251)
T TIGR03704        54 GLRIAVDP-GVFVPRRRTEFLVDEAAALARPRS-------GTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVR  124 (251)
T ss_pred             CeEEEECC-CCcCCCccHHHHHHHHHHhhcccC-------CCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHH
Confidence            33344433 34552  45556666665543111       124799999999999998876410 013344677777776


Q ss_pred             HHHHc----CCCeEEeeccccCCCC-CCCcccceEec
Q 019228          293 LTLER----GLPAMIGSFASKQLPY-PSLSFDMLHCA  324 (344)
Q Consensus       293 ~A~eR----Gvpa~~~~lda~rLPF-pD~SFDlVhcs  324 (344)
                      .|++.    ++.+..+++. ..++- ..+.||+|++.
T Consensus       125 ~A~~N~~~~~~~~~~~D~~-~~l~~~~~~~fDlVv~N  160 (251)
T TIGR03704       125 CARRNLADAGGTVHEGDLY-DALPTALRGRVDILAAN  160 (251)
T ss_pred             HHHHHHHHcCCEEEEeech-hhcchhcCCCEeEEEEC
Confidence            66543    4445555531 12221 13579999986

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.36  E-value=0.0003  Score=70.74  Aligned_cols=90  Identities=19%  Similarity=0.324  Sum_probs=55.8

Q ss_pred             Ccccc----chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--
Q 019228          224 SLIFD----GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--  297 (344)
Q Consensus       224 gt~F~----g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--  297 (344)
                      +.||.    .....++.+.+++...+        ..+|||+|||+|.++..|++..-   .+.+.|.++.+++.|++.  
T Consensus       267 ~~F~Q~N~~~~~~l~~~~~~~l~~~~--------~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~  335 (431)
T TIGR00479       267 RDFFQVNSGQNEKLVDRALEALELQG--------EELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAE  335 (431)
T ss_pred             CceeecCHHHHHHHHHHHHHHhccCC--------CCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHH
Confidence            45663    23344566666654332        25799999999999999987632   234456777777666542  


Q ss_pred             --CC---CeEEeeccc--cCCCCCCCcccceEec
Q 019228          298 --GL---PAMIGSFAS--KQLPYPSLSFDMLHCA  324 (344)
Q Consensus       298 --Gv---pa~~~~lda--~rLPFpD~SFDlVhcs  324 (344)
                        ++   .++.+++..  ..+++.+++||+|+..
T Consensus       336 ~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       336 LNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD  369 (431)
T ss_pred             HhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence              33   344454311  1345667889999974

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.35  E-value=0.00033  Score=66.82  Aligned_cols=66  Identities=18%  Similarity=0.224  Sum_probs=44.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC----eEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP----AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..|+...- ...+.+.|+++.+++.|++.    ++.    +..+++  . -+++++.||+|+|+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~--~-~~~~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL--F-EPLAGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch--h-ccCcCCCccEEEEC
Confidence            4799999999999998887521 01344567777777766653    332    333432  2 25666689999996

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.34  E-value=0.00033  Score=62.41  Aligned_cols=61  Identities=13%  Similarity=0.225  Sum_probs=38.6

Q ss_pred             CeEEEECCccchhhHHHhhCC-----ceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCC--------CCCCcccce
Q 019228          255 RTILDIGCGYGSFGAHLFSKE-----LLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDML  321 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~-----V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLP--------FpD~SFDlV  321 (344)
                      .+|||+|||+|.++..++++.     ++++++     ++.+    ...++....+++  ...+        +++++||+|
T Consensus        34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDi-----s~~~----~~~~i~~~~~d~--~~~~~~~~l~~~~~~~~~D~V  102 (188)
T TIGR00438        34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDL-----QPMK----PIENVDFIRGDF--TDEEVLNKIRERVGDDKVDVV  102 (188)
T ss_pred             CEEEEecCCCCHHHHHHHHHhCCCceEEEEec-----cccc----cCCCceEEEeeC--CChhHHHHHHHHhCCCCccEE
Confidence            589999999999988776641     444444     3322    112444444443  3332        678899999


Q ss_pred             Eeccc
Q 019228          322 HCARC  326 (344)
Q Consensus       322 hcs~~  326 (344)
                      +|..+
T Consensus       103 ~~~~~  107 (188)
T TIGR00438       103 MSDAA  107 (188)
T ss_pred             EcCCC
Confidence            99653

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.31  E-value=0.00029  Score=68.59  Aligned_cols=66  Identities=15%  Similarity=0.197  Sum_probs=43.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC----CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv----pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..|+.+.- ...+.+.|+++.+++.|++.    ++    .+..+++  .. ++++++||+|+|+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~--~~-~l~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL--FA-ALPGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch--hh-hCCCCCccEEEEC
Confidence            4799999999999999887521 12344567777777766543    43    2334443  11 3456789999996

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.31  E-value=0.00056  Score=69.00  Aligned_cols=68  Identities=16%  Similarity=0.173  Sum_probs=45.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEE--eeccccCCCC--CCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLPY--PSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~--~~lda~rLPF--pD~SFDlVhc  323 (344)
                      .+|||+|||+|..+.++++.-- ...+.+.|.++.+++.++++    |+...+  .+.|+..+++  ++++||.|++
T Consensus       240 ~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       240 ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            5899999999999988877411 12445567777777665443    555322  4445555555  6789999995

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PTZ00146 fibrillarin; Provisional

Probab=97.29  E-value=0.00033  Score=68.55  Aligned_cols=71  Identities=10%  Similarity=0.155  Sum_probs=43.6

Q ss_pred             CeEEEECCccchhhHHHhhCC-----ceEEEcccccccHHHHHHHHHc-CCCeEEeeccc-cCCCCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKE-----LLTMCIANYEASGSQVQLTLER-GLPAMIGSFAS-KQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~-----V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda-~rLPFpD~SFDlVhcs~~  326 (344)
                      .+|||+|||+|+++.+|++.-     |.++++++.+ .+.+++.|.++ ++.++++++.. ..++++..+||+|++..+
T Consensus       134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~-~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva  211 (293)
T PTZ00146        134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRS-GRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA  211 (293)
T ss_pred             CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHH-HHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC
Confidence            489999999999999998861     4444333211 11355666554 45555555311 123334568999999753

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.28  E-value=0.00057  Score=61.54  Aligned_cols=69  Identities=23%  Similarity=0.249  Sum_probs=41.0

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccC-CCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~r-LPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++.. +. ...+...|.++.+++.|+++    ++  .+.+-..|... ++..++.||.|++.
T Consensus        42 ~~vlDlG~GtG~~s~~~a~~~~~-~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~  118 (198)
T PRK00377         42 DMILDIGCGTGSVTVEASLLVGE-TGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG  118 (198)
T ss_pred             CEEEEeCCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence            48999999999998876542 11 01334456776676655443    42  12221123333 44445789999984

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.27  E-value=0.00065  Score=69.00  Aligned_cols=68  Identities=12%  Similarity=0.069  Sum_probs=44.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhc  323 (344)
                      .+|||+|||+|..+.++++.--....+.+.|.++.+++.++++    |+. +.+...|+..++ ++++||+|++
T Consensus       252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~  324 (445)
T PRK14904        252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILL  324 (445)
T ss_pred             CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEE
Confidence            5899999999998887776310011345567777777665543    553 233334555665 6789999994

>PRK00811 spermidine synthase; Provisional

Probab=97.25  E-value=0.0009  Score=64.30  Aligned_cols=69  Identities=20%  Similarity=0.264  Sum_probs=47.4

Q ss_pred             CCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc------C------CCeEEeeccccC-CCCCCCcc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER------G------LPAMIGSFASKQ-LPYPSLSF  318 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR------G------vpa~~~~lda~r-LPFpD~SF  318 (344)
                      ..++|||||||+|.++..++++ ++.  .+...|+++.+++.|++.      +      +.+..++  +.. ++..+++|
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D--a~~~l~~~~~~y  151 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD--GIKFVAETENSF  151 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc--hHHHHhhCCCcc
Confidence            3578999999999999988876 432  455577888888877653      1      1223343  322 44467899


Q ss_pred             cceEecc
Q 019228          319 DMLHCAR  325 (344)
Q Consensus       319 DlVhcs~  325 (344)
                      |+|++-.
T Consensus       152 DvIi~D~  158 (283)
T PRK00811        152 DVIIVDS  158 (283)
T ss_pred             cEEEECC
Confidence            9999853

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.24  E-value=0.00074  Score=66.75  Aligned_cols=101  Identities=19%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc-----CCC--e
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP--A  301 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR-----Gvp--a  301 (344)
                      +-..||..|.+++...+......+...++||||||+|.+...|+.+.. ...+.+.|+++..++.|++-     ++.  +
T Consensus        90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I  168 (321)
T PRK11727         90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAI  168 (321)
T ss_pred             cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence            557799988888753211011111235799999999988777765411 12344456666666555432     232  1


Q ss_pred             EEe-eccccCC----CCCCCcccceEecccccccCcc
Q 019228          302 MIG-SFASKQL----PYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       302 ~~~-~lda~rL----PFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      .+. ..+...+    -.+++.||+|+|+   -+++..
T Consensus       169 ~~~~~~~~~~i~~~i~~~~~~fDlivcN---PPf~~s  202 (321)
T PRK11727        169 RLRLQKDSKAIFKGIIHKNERFDATLCN---PPFHAS  202 (321)
T ss_pred             EEEEccchhhhhhcccccCCceEEEEeC---CCCcCc
Confidence            111 0111122    1357799999996   355543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.23  E-value=0.00064  Score=69.15  Aligned_cols=69  Identities=19%  Similarity=0.136  Sum_probs=46.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC-CCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP-FpD~SFDlVhc  323 (344)
                      .+|||+|||+|..+.++++.--....+...|+++.+++.+.++    |+. +.+...|+..++ +.+++||.|++
T Consensus       239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence            5799999999998888876410011345567787777665543    554 233344666776 66789999996

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.22  E-value=0.00077  Score=62.60  Aligned_cols=83  Identities=18%  Similarity=0.267  Sum_probs=46.7

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC---CeEEe
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL---PAMIG  304 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv---pa~~~  304 (344)
                      .+..+.+.+.++++        .+|||||||+|.+++.|+.. +-.+ .+...+..+..++.|+++    ++   .+..+
T Consensus        60 ~~a~~l~~L~l~pg--------~~VLeIGtGsGY~aAlla~lvg~~g-~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g  130 (209)
T PF01135_consen   60 MVARMLEALDLKPG--------DRVLEIGTGSGYQAALLAHLVGPVG-RVVSVERDPELAERARRNLARLGIDNVEVVVG  130 (209)
T ss_dssp             HHHHHHHHTTC-TT---------EEEEES-TTSHHHHHHHHHHSTTE-EEEEEESBHHHHHHHHHHHHHHTTHSEEEEES
T ss_pred             HHHHHHHHHhcCCC--------CEEEEecCCCcHHHHHHHHhcCccc-eEEEECccHHHHHHHHHHHHHhccCceeEEEc
Confidence            45566666666544        58999999999999887763 1000 112234555555555443    33   34555


Q ss_pred             eccccCCCCC-CCcccceEecccc
Q 019228          305 SFASKQLPYP-SLSFDMLHCARCG  327 (344)
Q Consensus       305 ~lda~rLPFp-D~SFDlVhcs~~L  327 (344)
                      +.  . ..++ ...||.|++..+.
T Consensus       131 dg--~-~g~~~~apfD~I~v~~a~  151 (209)
T PF01135_consen  131 DG--S-EGWPEEAPFDRIIVTAAV  151 (209)
T ss_dssp             -G--G-GTTGGG-SEEEEEESSBB
T ss_pred             ch--h-hccccCCCcCEEEEeecc
Confidence            43  2 3333 4689999998665

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.21  E-value=0.00092  Score=61.62  Aligned_cols=101  Identities=10%  Similarity=0.052  Sum_probs=52.7

Q ss_pred             ccceeeecCCCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHH
Q 019228          214 EEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL  293 (344)
Q Consensus       214 eg~~~~FpGggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~  293 (344)
                      .|.++..|.+..+--..+...+.+.+++....       ...+|||+|||+|.++..++.++..  .+...+.++..++.
T Consensus        21 ~g~~l~~~~~~~~Rp~~d~v~e~l~~~l~~~~-------~~~~vLDl~~GsG~l~l~~lsr~a~--~V~~vE~~~~a~~~   91 (199)
T PRK10909         21 RGRKLPVPDSPGLRPTTDRVRETLFNWLAPVI-------VDARCLDCFAGSGALGLEALSRYAA--GATLLEMDRAVAQQ   91 (199)
T ss_pred             CCCEeCCCCCCCcCcCCHHHHHHHHHHHhhhc-------CCCEEEEcCCCccHHHHHHHHcCCC--EEEEEECCHHHHHH
Confidence            34455555432111233444455555543111       1247999999999999865554321  33445555555554


Q ss_pred             HHH----cCC---CeEEeeccccCCCCCCCcccceEec
Q 019228          294 TLE----RGL---PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       294 A~e----RGv---pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      |.+    .++   .+..+++ .+.++...++||+|++.
T Consensus        92 a~~Nl~~~~~~~v~~~~~D~-~~~l~~~~~~fDlV~~D  128 (199)
T PRK10909         92 LIKNLATLKAGNARVVNTNA-LSFLAQPGTPHNVVFVD  128 (199)
T ss_pred             HHHHHHHhCCCcEEEEEchH-HHHHhhcCCCceEEEEC
Confidence            433    233   2333432 12233345679999986

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.18  E-value=0.001  Score=67.41  Aligned_cols=68  Identities=24%  Similarity=0.111  Sum_probs=46.2

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC----CCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP----YPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP----FpD~SFDlVhc  323 (344)
                      .+|||+|||+|..+..|++. +-. ..+...|.++.+++.++++    |+. +.+-..|+..++    +.+++||.|++
T Consensus       254 ~~VLDl~ag~G~kt~~la~~~~~~-g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~  331 (434)
T PRK14901        254 EVILDACAAPGGKTTHIAELMGDQ-GEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL  331 (434)
T ss_pred             CEEEEeCCCCchhHHHHHHHhCCC-ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence            57999999999999888774 111 1345567787777665543    543 333334566666    66889999995

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.17  E-value=0.00099  Score=65.12  Aligned_cols=67  Identities=16%  Similarity=0.269  Sum_probs=36.6

Q ss_pred             CeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||||||+|-++..-+..   .|.++++.+.-+..+. +.+...++...+...  ....++...||+|+++
T Consensus       163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvAN  232 (295)
T PF06325_consen  163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDRIEVS--LSEDLVEGKFDLVVAN  232 (295)
T ss_dssp             SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTCEEES--CTSCTCCS-EEEEEEE
T ss_pred             CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCeeEEEE--EecccccccCCEEEEC
Confidence            58999999999776554444   3555555443333322 223334554333221  1234556999999986

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.16  E-value=0.00065  Score=63.41  Aligned_cols=72  Identities=18%  Similarity=0.245  Sum_probs=52.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH----HcCCC--eEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~----eRGvp--a~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||+|||.|.+...|++.+... .+.+.|.++..++.|+    .++++  +.+..+|...--|..+.||+|+=-..+
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL  146 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence            479999999999999999987542 3788899988876654    33555  344444444557888999999865443

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.07  E-value=0.0019  Score=64.31  Aligned_cols=98  Identities=14%  Similarity=0.239  Sum_probs=55.2

Q ss_pred             cceeeecCCCcccc----chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHH
Q 019228          215 EEQISFRSASLIFD----GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ  290 (344)
Q Consensus       215 g~~~~FpGggt~F~----g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~  290 (344)
                      |-.+.++. +.||.    .++..++.+.+++...        ...+|||++||+|.++..++.++.   .+.+.|.++..
T Consensus       200 g~~~~~~~-~~F~Q~n~~~~~~l~~~~~~~l~~~--------~~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~a  267 (374)
T TIGR02085       200 DVPLVIRP-QSFFQTNPKVAAQLYATARQWVREI--------PVTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEA  267 (374)
T ss_pred             CEEEEECC-CccccCCHHHHHHHHHHHHHHHHhc--------CCCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHH
Confidence            43566654 45773    2333344455554311        125899999999999999987643   33445666666


Q ss_pred             HHHHHH----cCCC-eEEeeccccCC-CCCCCcccceEec
Q 019228          291 VQLTLE----RGLP-AMIGSFASKQL-PYPSLSFDMLHCA  324 (344)
Q Consensus       291 Iq~A~e----RGvp-a~~~~lda~rL-PFpD~SFDlVhcs  324 (344)
                      ++.|++    .++. +.+...|+... +-..+.||+|++.
T Consensus       268 v~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D  307 (374)
T TIGR02085       268 IACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN  307 (374)
T ss_pred             HHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence            665554    2442 22222233332 2122469999875

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.07  E-value=0.0015  Score=66.12  Aligned_cols=69  Identities=17%  Similarity=0.227  Sum_probs=43.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC--CCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP--YPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP--FpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++++--....+.+.|+++.+++.++++    |+. +.+...|+..++  ++ ++||+|++-
T Consensus       252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D  327 (444)
T PRK14902        252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD  327 (444)
T ss_pred             CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence            5799999999999988887410011345567777777666543    443 222223444442  44 789999974

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.02  E-value=0.00089  Score=64.59  Aligned_cols=74  Identities=20%  Similarity=0.216  Sum_probs=45.1

Q ss_pred             eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      +|||+|||+|..+..|+.+... ..+.+.|+++..++.|++    .++.- +..+...-++=-.+.||+|+|+   -+|.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l~~-~~~~~~dlf~~~~~~fDlIVsN---PPYi  187 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGLVR-VLVVQSDLFEPLRGKFDLIVSN---PPYI  187 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCCcc-EEEEeeecccccCCceeEEEeC---CCCC
Confidence            7999999999999999887432 244556777777666654    35311 1111110111112389999996   3666


Q ss_pred             ccc
Q 019228          332 QKG  334 (344)
Q Consensus       332 ~~~  334 (344)
                      +..
T Consensus       188 p~~  190 (280)
T COG2890         188 PAE  190 (280)
T ss_pred             CCc
Confidence            554

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.02  E-value=0.0025  Score=47.64  Aligned_cols=70  Identities=24%  Similarity=0.416  Sum_probs=42.7

Q ss_pred             EEEECCccchhh--HHHhhCCceEEEcccccccHHHHHHHHHcC-------CCeEEeeccccC--CCCCC-CcccceEec
Q 019228          257 ILDIGCGYGSFG--AHLFSKELLTMCIANYEASGSQVQLTLERG-------LPAMIGSFASKQ--LPYPS-LSFDMLHCA  324 (344)
Q Consensus       257 VLDVGCGtGsfa--a~Laer~V~~~sIa~~D~sea~Iq~A~eRG-------vpa~~~~lda~r--LPFpD-~SFDlVhcs  324 (344)
                      +||+|||+|...  ..+.......   .+.|.+..+++.+....       +....++  ...  +||.+ .+||++ +.
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~-~~  125 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYV---VGVDLSPEMLALARARAEGAGLGLVDFVVAD--ALGGVLPFEDSASFDLV-IS  125 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceE---EEEeCCHHHHHHHHhhhhhcCCCceEEEEec--cccCCCCCCCCCceeEE-ee
Confidence            999999999854  3333322122   22577776666544332       2233333  333  89999 599999 77


Q ss_pred             ccccccCc
Q 019228          325 RCGVDWDQ  332 (344)
Q Consensus       325 ~~Li~W~~  332 (344)
                      .+..+|..
T Consensus       126 ~~~~~~~~  133 (257)
T COG0500         126 LLVLHLLP  133 (257)
T ss_pred             eeehhcCC
Confidence            77766654

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.99  E-value=0.0014  Score=62.09  Aligned_cols=69  Identities=16%  Similarity=0.205  Sum_probs=45.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhc  323 (344)
                      .+|||+|||+|..+..|++.--..-.+...|.++.+++.++++    ++. +.+...|+..++...+.||.|++
T Consensus        73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            5799999999999988876410001345568887777665543    443 23333456667777778999986

>PRK04457 spermidine synthase; Provisional

Probab=96.98  E-value=0.00096  Score=63.49  Aligned_cols=68  Identities=15%  Similarity=0.207  Sum_probs=45.1

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc-C-------CCeEEeeccccC-CCCCCCcccceEec
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-G-------LPAMIGSFASKQ-LPYPSLSFDMLHCA  324 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR-G-------vpa~~~~lda~r-LPFpD~SFDlVhcs  324 (344)
                      .++|||||||+|+++..++++.. ...+...|+++++++.|++. +       +.+..++  +.. ++-..++||+|++-
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~D--a~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEAD--GAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECC--HHHHHHhCCCCCCEEEEe
Confidence            46899999999999998877521 12455578888888888764 2       1223343  321 22234689999985

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.95  E-value=0.002  Score=59.36  Aligned_cols=76  Identities=22%  Similarity=0.395  Sum_probs=48.9

Q ss_pred             CCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc-CCCeEEeeccccCCCCCCCcccceEecccccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      ..++|||||+|+|.++..++++  ++.+   .-.|+ +..++.+.+. .+..+-+++  . -|+|.  +|+|+..++|+.
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~---~v~Dl-p~v~~~~~~~~rv~~~~gd~--f-~~~P~--~D~~~l~~vLh~  170 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRA---TVFDL-PEVIEQAKEADRVEFVPGDF--F-DPLPV--ADVYLLRHVLHD  170 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEE---EEEE--HHHHCCHHHTTTEEEEES-T--T-TCCSS--ESEEEEESSGGG
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcc---eeecc-HhhhhccccccccccccccH--H-hhhcc--ccceeeehhhhh
Confidence            4578999999999999998875  3322   22444 3344445442 244455554  2 46677  999999999999


Q ss_pred             cCcccccc
Q 019228          330 WDQKGKCQ  337 (344)
Q Consensus       330 W~~~~g~~  337 (344)
                      |.+++-++
T Consensus       171 ~~d~~~~~  178 (241)
T PF00891_consen  171 WSDEDCVK  178 (241)
T ss_dssp             S-HHHHHH
T ss_pred             cchHHHHH
Confidence            99876544

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.92  E-value=0.00092  Score=69.43  Aligned_cols=66  Identities=14%  Similarity=0.230  Sum_probs=42.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC----CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv----pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++.+.- ...+.+.|.++.+++.|++.    ++    .+..+++  . -++++++||+|+|+
T Consensus       140 ~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~--~-~~~~~~~fDlIvsN  213 (506)
T PRK01544        140 LNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW--F-ENIEKQKFDFIVSN  213 (506)
T ss_pred             CEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch--h-hhCcCCCccEEEEC
Confidence            4799999999999988875410 01334467777777666653    33    2233332  1 13456789999995

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.92  E-value=0.0019  Score=57.85  Aligned_cols=41  Identities=20%  Similarity=0.143  Sum_probs=27.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE  296 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e  296 (344)
                      .+|||+|||+|.++..++...- ...+.+.|.++.+++.|++
T Consensus        42 ~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~   82 (196)
T PRK07402         42 SVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRR   82 (196)
T ss_pred             CEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHH
Confidence            5899999999999988865310 0134446777777666654

>PRK01581 speE spermidine synthase; Validated

Probab=96.88  E-value=0.0024  Score=64.55  Aligned_cols=69  Identities=17%  Similarity=0.278  Sum_probs=47.5

Q ss_pred             CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--------C------CCeEEeeccccC-CCCCCCc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------G------LPAMIGSFASKQ-LPYPSLS  317 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--------G------vpa~~~~lda~r-LPFpD~S  317 (344)
                      ..++||+||||+|..+..+++... ...+...|+++++++.|++.        +      +.+.+++  +.+ |+-.++.
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D--a~~fL~~~~~~  226 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD--AKEFLSSPSSL  226 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc--HHHHHHhcCCC
Confidence            457999999999988887777531 12556678889999988851        1      1223343  333 4556778


Q ss_pred             ccceEec
Q 019228          318 FDMLHCA  324 (344)
Q Consensus       318 FDlVhcs  324 (344)
                      ||+|++-
T Consensus       227 YDVIIvD  233 (374)
T PRK01581        227 YDVIIID  233 (374)
T ss_pred             ccEEEEc
Confidence            9999986

>PLN02366 spermidine synthase

Probab=96.81  E-value=0.0027  Score=62.31  Aligned_cols=68  Identities=16%  Similarity=0.198  Sum_probs=44.5

Q ss_pred             CCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC-----------CCeEEeeccccC-C-CCCCCcc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG-----------LPAMIGSFASKQ-L-PYPSLSF  318 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG-----------vpa~~~~lda~r-L-PFpD~SF  318 (344)
                      ..++|||||||+|.++..++++ ++.  .+...|+++.+++.|++.-           +.+..++  +.. + ..+++.|
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~--~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D--a~~~l~~~~~~~y  166 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVE--QIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD--GVEFLKNAPEGTY  166 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCC--eEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh--HHHHHhhccCCCC
Confidence            3578999999999999998876 332  3444677777777776531           2223333  321 1 1246789


Q ss_pred             cceEec
Q 019228          319 DMLHCA  324 (344)
Q Consensus       319 DlVhcs  324 (344)
                      |+|++-
T Consensus       167 DvIi~D  172 (308)
T PLN02366        167 DAIIVD  172 (308)
T ss_pred             CEEEEc
Confidence            999984

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.0073  Score=56.74  Aligned_cols=81  Identities=16%  Similarity=0.215  Sum_probs=51.9

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC---CeEEee
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGS  305 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv---pa~~~~  305 (344)
                      ..-.+.+.+.++.+        .+||+||||+|..++.|++..-.+.+   .+..+...+.|+++    |+   .+.++|
T Consensus        60 ~vA~m~~~L~~~~g--------~~VLEIGtGsGY~aAvla~l~~~V~s---iEr~~~L~~~A~~~L~~lg~~nV~v~~gD  128 (209)
T COG2518          60 MVARMLQLLELKPG--------DRVLEIGTGSGYQAAVLARLVGRVVS---IERIEELAEQARRNLETLGYENVTVRHGD  128 (209)
T ss_pred             HHHHHHHHhCCCCC--------CeEEEECCCchHHHHHHHHHhCeEEE---EEEcHHHHHHHHHHHHHcCCCceEEEECC
Confidence            34456666666544        58999999999999988886323333   33444445556442    33   345555


Q ss_pred             ccccCCCCCC-CcccceEecccc
Q 019228          306 FASKQLPYPS-LSFDMLHCARCG  327 (344)
Q Consensus       306 lda~rLPFpD-~SFDlVhcs~~L  327 (344)
                      .   ..-++. ..||.|++..+.
T Consensus       129 G---~~G~~~~aPyD~I~Vtaaa  148 (209)
T COG2518         129 G---SKGWPEEAPYDRIIVTAAA  148 (209)
T ss_pred             c---ccCCCCCCCcCEEEEeecc
Confidence            3   355666 889999988654

>PRK03612 spermidine synthase; Provisional

Probab=96.50  E-value=0.0047  Score=64.33  Aligned_cols=68  Identities=13%  Similarity=0.107  Sum_probs=47.1

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--------------CCCeEEeeccccC-CCCCCCcc
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--------------GLPAMIGSFASKQ-LPYPSLSF  318 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--------------Gvpa~~~~lda~r-LPFpD~SF  318 (344)
                      .++|||||||+|..+..++++.. ...+...|+++++++.|++.              .+.+..+  |+.+ +...+++|
T Consensus       298 ~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~--Da~~~l~~~~~~f  374 (521)
T PRK03612        298 PRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVND--DAFNWLRKLAEKF  374 (521)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEC--hHHHHHHhCCCCC
Confidence            46899999999999988887632 12556678888999988772              1222333  3333 33445799


Q ss_pred             cceEec
Q 019228          319 DMLHCA  324 (344)
Q Consensus       319 DlVhcs  324 (344)
                      |+|++.
T Consensus       375 DvIi~D  380 (521)
T PRK03612        375 DVIIVD  380 (521)
T ss_pred             CEEEEe
Confidence            999996

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.47  E-value=0.0099  Score=55.45  Aligned_cols=63  Identities=16%  Similarity=0.200  Sum_probs=34.8

Q ss_pred             CCeEEEECCccchhhHH--Hhh-CCceEEEcccccccHHHHHHHHHc---C-CCeEEeeccccCCCCCCCcccceEec
Q 019228          254 VRTILDIGCGYGSFGAH--LFS-KELLTMCIANYEASGSQVQLTLER---G-LPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~--Lae-r~V~~~sIa~~D~sea~Iq~A~eR---G-vpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .++|||+|||||.|+.-  ++. +.|+++     |+.+..++.+++.   . ..+.+-..|   .-..+..||.|+.+
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~~V~~v-----diD~~a~ei~r~N~~~l~g~v~f~~~d---v~~~~~~~dtvimN  115 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGASRVLAV-----DIDPEALEIARANAEELLGDVEFVVAD---VSDFRGKFDTVIMN  115 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCcEEEEE-----ecCHHHHHHHHHHHHhhCCceEEEEcc---hhhcCCccceEEEC
Confidence            35899999999977644  443 345554     4444455444332   1 122222222   33456667777765

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=96.44  E-value=0.0073  Score=58.59  Aligned_cols=93  Identities=18%  Similarity=0.259  Sum_probs=58.1

Q ss_pred             cCCCccc-cchhhHHHHHHHHhccccCccccc-CCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHH
Q 019228          221 RSASLIF-DGVEDYSHQIAEMIGLRNESNFIL-AGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLE  296 (344)
Q Consensus       221 pGggt~F-~g~~~yId~I~e~Lpl~~g~~w~~-~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~e  296 (344)
                      =|.|.|| =..+    |+.+++... +..|.. ....++||||.|.|..+..|+..  .|.+     .+++.-|...-.+
T Consensus        65 LgRG~MFvfS~~----Q~~~LL~~~-~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~a-----TE~S~~Mr~rL~~  134 (265)
T PF05219_consen   65 LGRGSMFVFSEE----QFRKLLRIS-GFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYA-----TEASPPMRWRLSK  134 (265)
T ss_pred             hcCCcEEEecHH----HHHHHhhhh-ccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEe-----ecCCHHHHHHHHh
Confidence            3566777 2334    344444432 112322 13468999999999999999774  4443     4677777766667


Q ss_pred             cCCCeEEeeccccCCCCCCCcccceEecccc
Q 019228          297 RGLPAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       297 RGvpa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      ||..+.-    .....=.+..||+|.|-++|
T Consensus       135 kg~~vl~----~~~w~~~~~~fDvIscLNvL  161 (265)
T PF05219_consen  135 KGFTVLD----IDDWQQTDFKFDVISCLNVL  161 (265)
T ss_pred             CCCeEEe----hhhhhccCCceEEEeehhhh
Confidence            8875332    22233345689999999877

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>TIGR00417 speE spermidine synthase

Probab=96.39  E-value=0.0084  Score=56.97  Aligned_cols=72  Identities=13%  Similarity=0.086  Sum_probs=43.6

Q ss_pred             CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---------CCeEEeeccccC-CCCCCCcccceE
Q 019228          253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH  322 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---------vpa~~~~lda~r-LPFpD~SFDlVh  322 (344)
                      ..++||+||||+|.++..++++.. ...+...|+++.+++.|++.-         ..+.+...|+.. +.-.+++||+|+
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            356899999999999988876631 123455677777777776531         011111122211 222357999999


Q ss_pred             ecc
Q 019228          323 CAR  325 (344)
Q Consensus       323 cs~  325 (344)
                      +..
T Consensus       151 ~D~  153 (270)
T TIGR00417       151 VDS  153 (270)
T ss_pred             EeC
Confidence            864

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.38  E-value=0.0068  Score=60.08  Aligned_cols=73  Identities=22%  Similarity=0.252  Sum_probs=40.9

Q ss_pred             CCeEEEECCccch-hhHHHhhCCceEEEcccccccHHHHHHHHHcC---------------CCeEEeeccc------cCC
Q 019228          254 VRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFAS------KQL  311 (344)
Q Consensus       254 ir~VLDVGCGtGs-faa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---------------vpa~~~~lda------~rL  311 (344)
                      ..+|||+|||-|. +.-+.. .++.  .+.+.|++...|+.|.+|.               ..+.+...|.      ..+
T Consensus        63 ~~~VLDl~CGkGGDL~Kw~~-~~i~--~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   63 GLTVLDLCCGKGGDLQKWQK-AKIK--HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             T-EEEEET-TTTTTHHHHHH-TT-S--EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCeEEEecCCCchhHHHHHh-cCCC--EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            3589999999664 544444 3332  3445677777888887774               2222222222      134


Q ss_pred             CCCCCcccceEecccccc
Q 019228          312 PYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       312 PFpD~SFDlVhcs~~Li~  329 (344)
                      +.+...||+|-|..+++.
T Consensus       140 ~~~~~~FDvVScQFalHY  157 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFALHY  157 (331)
T ss_dssp             SSTTS-EEEEEEES-GGG
T ss_pred             cccCCCcceeehHHHHHH
Confidence            444569999999998854

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.37  E-value=0.015  Score=54.93  Aligned_cols=76  Identities=18%  Similarity=0.065  Sum_probs=50.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH-----------------cCCCeEEeeccccCCCCC---
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-----------------RGLPAMIGSFASKQLPYP---  314 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e-----------------RGvpa~~~~lda~rLPFp---  314 (344)
                      .+||+.|||.|.-+.+|+++|..   +.+.|+++..++.+.+                 ++..+.+-..|.-.|+..   
T Consensus        45 ~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~  121 (226)
T PRK13256         45 SVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN  121 (226)
T ss_pred             CeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence            48999999999999999998753   3446777776665433                 122222222334456542   


Q ss_pred             CCcccceEecccccccCcc
Q 019228          315 SLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       315 D~SFDlVhcs~~Li~W~~~  333 (344)
                      -+.||+|.=..+++...++
T Consensus       122 ~~~fD~VyDra~~~Alpp~  140 (226)
T PRK13256        122 LPVFDIWYDRGAYIALPND  140 (226)
T ss_pred             cCCcCeeeeehhHhcCCHH
Confidence            2689999988888776543

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.36  E-value=0.0041  Score=54.61  Aligned_cols=47  Identities=17%  Similarity=0.223  Sum_probs=36.0

Q ss_pred             cccccHHHHHHHHHcC----------CCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          283 NYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       283 ~~D~sea~Iq~A~eRG----------vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      +.|+++.|++.|++|.          +.+..+  |++.|||++++||+|+|..++.+|.
T Consensus         2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~--d~~~lp~~~~~fD~v~~~~~l~~~~   58 (160)
T PLN02232          2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEG--DAIDLPFDDCEFDAVTMGYGLRNVV   58 (160)
T ss_pred             eEcCCHHHHHHHHHhhhcccccCCCceEEEEe--chhhCCCCCCCeeEEEecchhhcCC
Confidence            4688999998886541          233444  5789999999999999998886664

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.25  E-value=0.011  Score=55.82  Aligned_cols=60  Identities=13%  Similarity=0.138  Sum_probs=29.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      -+|-|+|||++.+|..+.. ..++.++.....           .-.+..+++  .++|.+|++.|+|++..+|.
T Consensus        74 ~viaD~GCGdA~la~~~~~-~~~V~SfDLva~-----------n~~Vtacdi--a~vPL~~~svDv~VfcLSLM  133 (219)
T PF05148_consen   74 LVIADFGCGDAKLAKAVPN-KHKVHSFDLVAP-----------NPRVTACDI--ANVPLEDESVDVAVFCLSLM  133 (219)
T ss_dssp             S-EEEES-TT-HHHHH--S----EEEEESS-S-----------STTEEES-T--TS-S--TT-EEEEEEES---
T ss_pred             EEEEECCCchHHHHHhccc-CceEEEeeccCC-----------CCCEEEecC--ccCcCCCCceeEEEEEhhhh
Confidence            4799999999999977653 333345332211           122455554  68999999999999987774

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.22  E-value=0.0069  Score=56.69  Aligned_cols=69  Identities=17%  Similarity=0.102  Sum_probs=38.9

Q ss_pred             CCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC----eEEeeccccCCC-----CCCCccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP----AMIGSFASKQLP-----YPSLSFD  319 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~~lda~rLP-----FpD~SFD  319 (344)
                      .++|||||||+|.-+..|+.. ... ..+...|.++..++.|++.    |+.    +..+++ .+-|+     .++++||
T Consensus        69 ~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda-~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781         69 AKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA-LSALDQLLNNDPKPEFD  146 (234)
T ss_pred             CCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH-HHHHHHHHhCCCCCCCC
Confidence            368999999999876666543 100 1233355666555555442    442    334432 11122     2357899


Q ss_pred             ceEec
Q 019228          320 MLHCA  324 (344)
Q Consensus       320 lVhcs  324 (344)
                      +|+.-
T Consensus       147 ~VfiD  151 (234)
T PLN02781        147 FAFVD  151 (234)
T ss_pred             EEEEC
Confidence            99875

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.10  E-value=0.016  Score=53.61  Aligned_cols=69  Identities=20%  Similarity=0.227  Sum_probs=38.3

Q ss_pred             CeEEEECCccchhhHHHh--hCCceEEEcccccccHHHHHH-HHHcCCC---eEEeeccccCCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLF--SKELLTMCIANYEASGSQVQL-TLERGLP---AMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~La--er~V~~~sIa~~D~sea~Iq~-A~eRGvp---a~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .+++|||||||+.+..++  .....++.|.........++. +..-|++   .+.++. .+-|+=.+ +||.|+...
T Consensus        36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A-p~~L~~~~-~~daiFIGG  110 (187)
T COG2242          36 DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA-PEALPDLP-SPDAIFIGG  110 (187)
T ss_pred             CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc-hHhhcCCC-CCCEEEECC
Confidence            589999999999998877  333333444333222223332 2223544   334442 23444222 899998764

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.05  E-value=0.015  Score=53.59  Aligned_cols=80  Identities=21%  Similarity=0.299  Sum_probs=45.0

Q ss_pred             CeEEEECCccc----hhhHHHhh--CCc--eEEEcccccccHHHHHHHHHc--------CCC------------------
Q 019228          255 RTILDIGCGYG----SFGAHLFS--KEL--LTMCIANYEASGSQVQLTLER--------GLP------------------  300 (344)
Q Consensus       255 r~VLDVGCGtG----sfaa~Lae--r~V--~~~sIa~~D~sea~Iq~A~eR--------Gvp------------------  300 (344)
                      -+|+.+||+||    |+|..|.+  .+.  .-+.|.+.|+++..++.|++-        ++|                  
T Consensus        33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v  112 (196)
T PF01739_consen   33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYRV  112 (196)
T ss_dssp             EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE
T ss_pred             eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCceeE
Confidence            37999999999    67777766  211  136778889999999888642        222                  


Q ss_pred             -------eEEeeccccCCCCCCCcccceEecccccccCccc
Q 019228          301 -------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKG  334 (344)
Q Consensus       301 -------a~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~~  334 (344)
                             +.+...+....+.+.+.||+|+|.++||.+++..
T Consensus       113 ~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~  153 (196)
T PF01739_consen  113 KPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET  153 (196)
T ss_dssp             -HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH
T ss_pred             ChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH
Confidence                   1112222223455678999999999999987653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=95.98  E-value=0.0078  Score=64.86  Aligned_cols=66  Identities=14%  Similarity=0.164  Sum_probs=43.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-----eEEeeccccC-CCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-----AMIGSFASKQ-LPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-----a~~~~lda~r-LPFpD~SFDlVhcs  324 (344)
                      ++|||+|||||.|+..++..+..  .+...|.++.+++.|++.    ++.     ++.++  +.. |.-..++||+|++.
T Consensus       540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D--~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQAD--CLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEcc--HHHHHHHcCCCcCEEEEC
Confidence            58999999999999999887532  344567777777666542    342     23333  211 11115789999984

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=95.96  E-value=0.014  Score=56.38  Aligned_cols=95  Identities=17%  Similarity=0.238  Sum_probs=64.6

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCce-EEEcccccccHHHHHHHHHcC------CCeEEeec
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLERG------LPAMIGSF  306 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~-~~sIa~~D~sea~Iq~A~eRG------vpa~~~~l  306 (344)
                      ...+.++++....      ...+||.||||+|....-|++-+-. .+.+-..|.++..++..+++.      +.+.+.++
T Consensus        58 ~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dl  131 (264)
T KOG2361|consen   58 LREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDL  131 (264)
T ss_pred             HHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceec
Confidence            5567777775421      2337999999999888777764211 245566788888888776652      33455565


Q ss_pred             cccC--CCCCCCcccceEecccccccCccc
Q 019228          307 ASKQ--LPYPSLSFDMLHCARCGVDWDQKG  334 (344)
Q Consensus       307 da~r--LPFpD~SFDlVhcs~~Li~W~~~~  334 (344)
                      +...  -|.+.+++|+|++..+|.--+++-
T Consensus       132 t~~~~~~~~~~~svD~it~IFvLSAi~pek  161 (264)
T KOG2361|consen  132 TSPSLKEPPEEGSVDIITLIFVLSAIHPEK  161 (264)
T ss_pred             cchhccCCCCcCccceEEEEEEEeccChHH
Confidence            4444  478899999999999986555443

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=95.95  E-value=0.022  Score=50.80  Aligned_cols=101  Identities=11%  Similarity=0.037  Sum_probs=40.2

Q ss_pred             CccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHHcCC
Q 019228          224 SLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERGL  299 (344)
Q Consensus       224 gt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~eRGv  299 (344)
                      ...|+++....+.|.+.......  .......+||++|||+|..+..++..    .|+..+...   ....++.-.++.-
T Consensus        18 ~~vW~aa~~La~~l~~~~~~~~~--~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---~l~~l~~Ni~~N~   92 (173)
T PF10294_consen   18 GKVWPAALVLARYLLSHSESEFN--PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---VLELLRRNIELNG   92 (173)
T ss_dssp             -----HHHHHHHHHHH---------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----HHHHHHHHHHTT-
T ss_pred             EEEechHHHHHHHHHHhcccccc--hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---hhHHHHHHHHhcc
Confidence            35666665555555554210000  00112368999999999777666655    343333222   1122222222211


Q ss_pred             -----CeEEeeccc---c-CCCCCCCcccceEecccccc
Q 019228          300 -----PAMIGSFAS---K-QLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       300 -----pa~~~~lda---~-rLPFpD~SFDlVhcs~~Li~  329 (344)
                           .+.+..++=   . .-.+..+.||+|+++.|++.
T Consensus        93 ~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~  131 (173)
T PF10294_consen   93 SLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYD  131 (173)
T ss_dssp             -------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-
T ss_pred             ccccccccCcEEEecCcccccccccccCCEEEEecccch
Confidence                 112221110   0 01123468999999999975

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=95.91  E-value=0.013  Score=58.75  Aligned_cols=68  Identities=19%  Similarity=0.379  Sum_probs=39.9

Q ss_pred             CeEEEECCccchhhHHHhhCCc-eEEEcccccccHHHHHHHHHcCCC----eEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKEL-LTMCIANYEASGSQVQLTLERGLP----AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V-~~~sIa~~D~sea~Iq~A~eRGvp----a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      ++|||||||||-++..-++.+. .++.+...++..-..+.+...++.    ...+.+.--.||  -...|+|+|-
T Consensus        62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~eKVDiIvSE  134 (346)
T KOG1499|consen   62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELP--VEKVDIIVSE  134 (346)
T ss_pred             CEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecC--ccceeEEeeh
Confidence            6899999999988877666542 233443444433333445445543    233332222455  8889999873

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=95.72  E-value=0.019  Score=51.73  Aligned_cols=75  Identities=20%  Similarity=0.310  Sum_probs=45.0

Q ss_pred             CeEEEECCccchhhH--HHhhCCce------EEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccc
Q 019228          255 RTILDIGCGYGSFGA--HLFSKELL------TMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDM  320 (344)
Q Consensus       255 r~VLDVGCGtGsfaa--~Laer~V~------~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDl  320 (344)
                      .++||-=||+|++..  .+...++.      ...+.+.|.++.+++.|++.    ++.  +.+...|+.+||+++++||.
T Consensus        30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~  109 (179)
T PF01170_consen   30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDA  109 (179)
T ss_dssp             S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCE
T ss_pred             CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCE
Confidence            479999999999973  33333433      11134567777776655542    443  34455578899999999999


Q ss_pred             eEecccccccCc
Q 019228          321 LHCARCGVDWDQ  332 (344)
Q Consensus       321 Vhcs~~Li~W~~  332 (344)
                      |+|.   -+|-.
T Consensus       110 Ivtn---PPyG~  118 (179)
T PF01170_consen  110 IVTN---PPYGR  118 (179)
T ss_dssp             EEEE-----STT
T ss_pred             EEEC---cchhh
Confidence            9996   35544

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=95.72  E-value=0.019  Score=55.48  Aligned_cols=79  Identities=19%  Similarity=0.304  Sum_probs=51.2

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHcC-----CCeEE
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG-----LPAMI  303 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eRG-----vpa~~  303 (344)
                      ...++.|.+.+...+        ...||.||+|.|.++..|+++.  |+++.     +++.+++.-.++-     +.++.
T Consensus        16 ~~v~~kIv~~a~~~~--------~d~VlEIGpG~GaLT~~Ll~~~~~v~aiE-----iD~~l~~~L~~~~~~~~n~~vi~   82 (259)
T COG0030          16 KNVIDKIVEAANISP--------GDNVLEIGPGLGALTEPLLERAARVTAIE-----IDRRLAEVLKERFAPYDNLTVIN   82 (259)
T ss_pred             HHHHHHHHHhcCCCC--------CCeEEEECCCCCHHHHHHHhhcCeEEEEE-----eCHHHHHHHHHhcccccceEEEe
Confidence            334777777765432        2589999999999999999984  44444     4444444333331     33344


Q ss_pred             eeccccCCCCCCC-cccceEec
Q 019228          304 GSFASKQLPYPSL-SFDMLHCA  324 (344)
Q Consensus       304 ~~lda~rLPFpD~-SFDlVhcs  324 (344)
                      +  |+...+|++. .++.|+++
T Consensus        83 ~--DaLk~d~~~l~~~~~vVaN  102 (259)
T COG0030          83 G--DALKFDFPSLAQPYKVVAN  102 (259)
T ss_pred             C--chhcCcchhhcCCCEEEEc
Confidence            4  5677888876 67777765

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=95.70  E-value=0.039  Score=54.49  Aligned_cols=88  Identities=17%  Similarity=0.310  Sum_probs=53.7

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----C----
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----G----  298 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----G----  298 (344)
                      ..+.+.+.+.+.+...   .|...  ..+||+|||+|..+..|+..  ++   .+.+.|.+++.+..|.|.    +    
T Consensus       129 ETEE~V~~Vid~~~~~---~~~~~--~~ildlgtGSGaIslsll~~L~~~---~v~AiD~S~~Ai~La~eN~qr~~l~g~  200 (328)
T KOG2904|consen  129 ETEEWVEAVIDALNNS---EHSKH--THILDLGTGSGAISLSLLHGLPQC---TVTAIDVSKAAIKLAKENAQRLKLSGR  200 (328)
T ss_pred             cHHHHHHHHHHHHhhh---hhccc--ceEEEecCCccHHHHHHHhcCCCc---eEEEEeccHHHHHHHHHHHHHHhhcCc
Confidence            4566666666665421   22211  37999999999998887764  32   234467787777776653    1    


Q ss_pred             CCeEEeeccc---cCCCCCCCcccceEec
Q 019228          299 LPAMIGSFAS---KQLPYPSLSFDMLHCA  324 (344)
Q Consensus       299 vpa~~~~lda---~rLPFpD~SFDlVhcs  324 (344)
                      +.+...++..   ...|..++..|+++|+
T Consensus       201 i~v~~~~me~d~~~~~~l~~~~~dllvsN  229 (328)
T KOG2904|consen  201 IEVIHNIMESDASDEHPLLEGKIDLLVSN  229 (328)
T ss_pred             eEEEecccccccccccccccCceeEEecC
Confidence            2222221211   2345678999999996

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=95.67  E-value=0.012  Score=59.65  Aligned_cols=66  Identities=12%  Similarity=0.136  Sum_probs=40.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-----eEEeeccccCC----CCCCCcccce
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-----AMIGSFASKQL----PYPSLSFDML  321 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-----a~~~~lda~rL----PFpD~SFDlV  321 (344)
                      .+|||+|||||.|+...+..+.  ..+...|.++.+++.|.+.    ++.     +..++  +...    .-..++||+|
T Consensus       222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D--~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD--VFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEcc--HHHHHHHHHhcCCCCCEE
Confidence            5799999999999877555432  1334456777766665542    442     23333  2221    1235689999


Q ss_pred             Eec
Q 019228          322 HCA  324 (344)
Q Consensus       322 hcs  324 (344)
                      ++.
T Consensus       298 ilD  300 (396)
T PRK15128        298 VMD  300 (396)
T ss_pred             EEC
Confidence            986

>PLN02672 methionine S-methyltransferase

Probab=95.28  E-value=0.015  Score=65.77  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=27.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL  295 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~  295 (344)
                      .+|||+|||+|.++..|+.+.-. ..+.+.|+++.+++.|+
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~  159 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAW  159 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHH
Confidence            47999999999999998875210 13344566666665553

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=95.28  E-value=0.025  Score=56.88  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-----------CCeEE--eecc----ccCCCCCCC
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------LPAMI--GSFA----SKQLPYPSL  316 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-----------vpa~~--~~ld----a~rLPFpD~  316 (344)
                      +..+||+|||-|.=....-..++-  .+.+.|+++..|+.|++|.           .++.+  ++-.    ...++|+|.
T Consensus       118 ~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  118 GDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             ccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            457999999987443333333321  3344677777777787762           12322  2210    136899999


Q ss_pred             cccceEeccccc
Q 019228          317 SFDMLHCARCGV  328 (344)
Q Consensus       317 SFDlVhcs~~Li  328 (344)
                      +||+|-|..|++
T Consensus       196 ~fDivScQF~~H  207 (389)
T KOG1975|consen  196 RFDIVSCQFAFH  207 (389)
T ss_pred             CcceeeeeeeEe
Confidence            999999999984

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.25  E-value=0.049  Score=56.01  Aligned_cols=99  Identities=16%  Similarity=0.236  Sum_probs=58.9

Q ss_pred             cceeeecCCCccc--c--chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccH
Q 019228          215 EEQISFRSASLIF--D--GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASG  288 (344)
Q Consensus       215 g~~~~FpGggt~F--~--g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~se  288 (344)
                      +..+.|+.. .||  |  .++..++.+.+.+...+        ..++||+=||.|+|+..|+.+  .|+++.+.+..+..
T Consensus       260 ~~~~~~~~~-sF~Q~N~~~~ekl~~~a~~~~~~~~--------~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~  330 (432)
T COG2265         260 GVSFQISPR-SFFQVNPAVAEKLYETALEWLELAG--------GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEA  330 (432)
T ss_pred             ceEEEeCCC-CceecCHHHHHHHHHHHHHHHhhcC--------CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHH
Confidence            445555443 677  3  44555666666665422        357999999999999999976  56665555444333


Q ss_pred             HHHHHHHHcCCC-eEEeeccccCCCCC---CCcccceEe
Q 019228          289 SQVQLTLERGLP-AMIGSFASKQLPYP---SLSFDMLHC  323 (344)
Q Consensus       289 a~Iq~A~eRGvp-a~~~~lda~rLPFp---D~SFDlVhc  323 (344)
                      ++ +.|+..++. +.+...++++..-.   ...||+|+-
T Consensus       331 A~-~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv  368 (432)
T COG2265         331 AQ-ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV  368 (432)
T ss_pred             HH-HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence            32 233344554 44444455554333   357888875

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.20  E-value=0.007  Score=59.38  Aligned_cols=72  Identities=18%  Similarity=0.181  Sum_probs=49.4

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      ..+||+|||.|.+...-     ....+.+.|.+...+..|+..|.. .....|+..+||++.+||.+++..+++||..
T Consensus        47 sv~~d~gCGngky~~~~-----p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT  118 (293)
T KOG1331|consen   47 SVGLDVGCGNGKYLGVN-----PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLST  118 (293)
T ss_pred             ceeeecccCCcccCcCC-----CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhh
Confidence            47999999999664321     112345567776665556555542 2233467899999999999999998877754

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.19  E-value=0.051  Score=52.21  Aligned_cols=91  Identities=15%  Similarity=0.113  Sum_probs=52.1

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc--CCCeEE----
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER--GLPAMI----  303 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR--Gvpa~~----  303 (344)
                      ...+++|.+.++.     |   ..++|||+|||+|+-.....+. + ....+...|.++.|+++++.-  ..+...    
T Consensus        19 ~~vl~El~~r~p~-----f---~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~   89 (274)
T PF09243_consen   19 YRVLSELRKRLPD-----F---RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW   89 (274)
T ss_pred             HHHHHHHHHhCcC-----C---CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchh
Confidence            3445566665541     2   3568999999999654433332 2 123455678888888766542  221110    


Q ss_pred             -eeccccCCCCCCCcccceEecccccccCc
Q 019228          304 -GSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       304 -~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                       ..+-...+++...  |+|+++.+|-+-..
T Consensus        90 ~~~~~~~~~~~~~~--DLvi~s~~L~EL~~  117 (274)
T PF09243_consen   90 RRVLYRDFLPFPPD--DLVIASYVLNELPS  117 (274)
T ss_pred             hhhhhcccccCCCC--cEEEEehhhhcCCc
Confidence             1111223444444  99999999976654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR00095 RNA methyltransferase, RsmD family

Probab=95.14  E-value=0.062  Score=48.84  Aligned_cols=39  Identities=21%  Similarity=0.160  Sum_probs=27.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL  295 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~  295 (344)
                      .++||++||+|.++..++.++..  .+...|.++..++.++
T Consensus        51 ~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~   89 (189)
T TIGR00095        51 AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLK   89 (189)
T ss_pred             CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHH
Confidence            47999999999999999998642  2344555555554443

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=95.10  E-value=0.025  Score=55.51  Aligned_cols=87  Identities=9%  Similarity=0.088  Sum_probs=52.3

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc-----CCCeEEeeccc
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFAS  308 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR-----Gvpa~~~~lda  308 (344)
                      ++.+.+.+...++        .++||.+||.|..+..+++..-....+.+.|.++.+++.|.++     .+.++.+++..
T Consensus         8 l~Evl~~L~~~pg--------~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~   79 (296)
T PRK00050          8 LDEVVDALAIKPD--------GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN   79 (296)
T ss_pred             HHHHHHhhCCCCC--------CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence            4555555543332        4899999999999999988621012455678888888888765     23344444321


Q ss_pred             c--CCCCCCCcccceEeccccc
Q 019228          309 K--QLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       309 ~--rLPFpD~SFDlVhcs~~Li  328 (344)
                      .  .++-.-.+||.|++-.-..
T Consensus        80 l~~~l~~~~~~vDgIl~DLGvS  101 (296)
T PRK00050         80 LKEVLAEGLGKVDGILLDLGVS  101 (296)
T ss_pred             HHHHHHcCCCccCEEEECCCcc
Confidence            1  1111112799988764443

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=95.07  E-value=0.047  Score=54.23  Aligned_cols=59  Identities=25%  Similarity=0.400  Sum_probs=35.8

Q ss_pred             CCccc--c--chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHH
Q 019228          223 ASLIF--D--GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTL  295 (344)
Q Consensus       223 ggt~F--~--g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~  295 (344)
                      -+.||  |  .+...++.+.++++..+         ..+||+=||+|+|+..|++.  .|+++     +..+.+++.|+
T Consensus       171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~---------~~vlDlycG~G~fsl~la~~~~~V~gv-----E~~~~av~~A~  235 (352)
T PF05958_consen  171 PGSFFQVNPEQNEKLYEQALEWLDLSK---------GDVLDLYCGVGTFSLPLAKKAKKVIGV-----EIVEEAVEDAR  235 (352)
T ss_dssp             TTS---SBHHHHHHHHHHHHHHCTT-T---------TEEEEES-TTTCCHHHHHCCSSEEEEE-----ES-HHHHHHHH
T ss_pred             CCcCccCcHHHHHHHHHHHHHHhhcCC---------CcEEEEeecCCHHHHHHHhhCCeEEEe-----eCCHHHHHHHH
Confidence            34677  3  44556777777776432         26999999999999999986  34443     44455554443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=94.96  E-value=0.04  Score=50.48  Aligned_cols=76  Identities=25%  Similarity=0.402  Sum_probs=40.6

Q ss_pred             eEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHHcCCCe-EEeeccccC-C--CCCCCcccceEecccc
Q 019228          256 TILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERGLPA-MIGSFASKQ-L--PYPSLSFDMLHCARCG  327 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~eRGvpa-~~~~lda~r-L--PFpD~SFDlVhcs~~L  327 (344)
                      .+||||||.|.|...++.+    +++++.+...-+..+ .+.+.+++++. .+-..|+.. |  =++++++|.|+... -
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a-~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-P   97 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKA-LRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-P   97 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHH-HHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHH-HHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-C
Confidence            8999999999999998875    344444333222222 23344446542 222224444 2  35679999999864 3


Q ss_pred             cccCcc
Q 019228          328 VDWDQK  333 (344)
Q Consensus       328 i~W~~~  333 (344)
                      .+|...
T Consensus        98 DPWpK~  103 (195)
T PF02390_consen   98 DPWPKK  103 (195)
T ss_dssp             ----SG
T ss_pred             CCCccc
Confidence            477654

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=94.96  E-value=0.045  Score=53.74  Aligned_cols=59  Identities=17%  Similarity=0.299  Sum_probs=38.4

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|-|+|||.+-+|..- ...|.-+++.+.+          +|   ++.++|  .++|.+|+|.|+|++..+|..
T Consensus       182 ~vIaD~GCGEakiA~~~-~~kV~SfDL~a~~----------~~---V~~cDm--~~vPl~d~svDvaV~CLSLMg  240 (325)
T KOG3045|consen  182 IVIADFGCGEAKIASSE-RHKVHSFDLVAVN----------ER---VIACDM--RNVPLEDESVDVAVFCLSLMG  240 (325)
T ss_pred             eEEEecccchhhhhhcc-ccceeeeeeecCC----------Cc---eeeccc--cCCcCccCcccEEEeeHhhhc
Confidence            47999999999887611 1244433332221          22   344554  579999999999998777643

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=94.94  E-value=0.056  Score=52.84  Aligned_cols=78  Identities=10%  Similarity=0.114  Sum_probs=51.7

Q ss_pred             eEEEECCccc----hhhHHHhhCC-c--eEEEcccccccHHHHHHHHHc--------CCC------------------e-
Q 019228          256 TILDIGCGYG----SFGAHLFSKE-L--LTMCIANYEASGSQVQLTLER--------GLP------------------A-  301 (344)
Q Consensus       256 ~VLDVGCGtG----sfaa~Laer~-V--~~~sIa~~D~sea~Iq~A~eR--------Gvp------------------a-  301 (344)
                      +|+.+||.||    ++|..|.+.. .  .-+.|.+.|+++..++.|++-        ++|                  . 
T Consensus       118 rIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~  197 (287)
T PRK10611        118 RVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVR  197 (287)
T ss_pred             EEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEE
Confidence            7999999999    6666666631 1  124677789999888888642        111                  0 


Q ss_pred             ---------EEeeccccCCCCC-CCcccceEecccccccCcc
Q 019228          302 ---------MIGSFASKQLPYP-SLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       302 ---------~~~~lda~rLPFp-D~SFDlVhcs~~Li~W~~~  333 (344)
                               .+...+....||+ .+.||+|+|.++++++...
T Consensus       198 v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~  239 (287)
T PRK10611        198 VRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT  239 (287)
T ss_pred             EChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH
Confidence                     1111222233554 6889999999999998664

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=94.79  E-value=0.066  Score=53.22  Aligned_cols=55  Identities=16%  Similarity=0.137  Sum_probs=35.7

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE  296 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e  296 (344)
                      ....++.+.+.+...        . .++||++||+|.|+..|++...   .+.+.|.++.+++.|++
T Consensus       183 ~~~l~~~v~~~~~~~--------~-~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~  237 (353)
T TIGR02143       183 NIKMLEWACEVTQGS--------K-GDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQY  237 (353)
T ss_pred             HHHHHHHHHHHhhcC--------C-CcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHH
Confidence            344566666655321        1 2599999999999998877521   34445666677666654

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=94.78  E-value=0.053  Score=51.31  Aligned_cols=77  Identities=22%  Similarity=0.263  Sum_probs=48.4

Q ss_pred             CeEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHHcCC-CeEEeeccccCC---CCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQL---PYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~eRGv-pa~~~~lda~rL---PFpD~SFDlVhcs~~  326 (344)
                      .++|+||||.|.|...++++    +++++.+-..-+.. .++.+.+.++ .+.+-..|+..+   =++++|.|-|+-.. 
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~-~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK-ALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF-  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH-HHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-
Confidence            47999999999999999987    33444333222222 2355666788 554443344332   34566999998864 


Q ss_pred             ccccCcc
Q 019228          327 GVDWDQK  333 (344)
Q Consensus       327 Li~W~~~  333 (344)
                      -.+|+..
T Consensus       128 PDPWpKk  134 (227)
T COG0220         128 PDPWPKK  134 (227)
T ss_pred             CCCCCCc
Confidence            3488754

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=94.77  E-value=0.062  Score=54.06  Aligned_cols=67  Identities=18%  Similarity=0.250  Sum_probs=47.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-e-EEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-A-MIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a-~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      ..+||==||||++..   +.+..+..+.+.|+.+.|++-|+..    ++. . .+...|+..|||++++||.|.|-
T Consensus       199 ~~vlDPFcGTGgiLi---Eagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatD  271 (347)
T COG1041         199 ELVLDPFCGTGGILI---EAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATD  271 (347)
T ss_pred             CEeecCcCCccHHHH---hhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEec
Confidence            479999999998854   3333334445578888888776532    232 2 22333899999999999999984

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=94.52  E-value=0.053  Score=46.61  Aligned_cols=41  Identities=20%  Similarity=0.262  Sum_probs=26.7

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhh
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS  273 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Lae  273 (344)
                      .+..+...|.+++..-.    ......+|+|+|||-|.++..|+.
T Consensus         5 Ei~~~~~~i~~~~~~~~----~~~~~~~vvD~GsG~GyLs~~La~   45 (141)
T PF13679_consen    5 EIERMAELIDSLCDSVG----ESKRCITVVDLGSGKGYLSRALAH   45 (141)
T ss_pred             HHHHHHHHHHHHHHHhh----ccCCCCEEEEeCCChhHHHHHHHH
Confidence            34455555555554200    012356899999999999998887

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=94.40  E-value=0.26  Score=49.91  Aligned_cols=66  Identities=17%  Similarity=0.260  Sum_probs=38.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .++||+||.+|.|+..|++++..++.|....+++.   ......+....++  +-+..-+.+.+|.|+|=-
T Consensus       213 ~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~---L~~~~~V~h~~~d--~fr~~p~~~~vDwvVcDm  278 (357)
T PRK11760        213 MRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQS---LMDTGQVEHLRAD--GFKFRPPRKNVDWLVCDM  278 (357)
T ss_pred             CEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHh---hhCCCCEEEEecc--CcccCCCCCCCCEEEEec
Confidence            58999999999999999999854444432222211   1111122222232  323221267899999953

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=94.31  E-value=0.092  Score=55.30  Aligned_cols=74  Identities=22%  Similarity=0.382  Sum_probs=48.5

Q ss_pred             eeeecCCCcccc----chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHH
Q 019228          217 QISFRSASLIFD----GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQ  290 (344)
Q Consensus       217 ~~~FpGggt~F~----g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~  290 (344)
                      +|+|+ -+.||.    .++..+..|.++..+..+        ..+|||-||||+++..|+++  .|+++.+.+.++..|.
T Consensus       352 tF~iS-p~AFFQ~Nt~~aevLys~i~e~~~l~~~--------k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~  422 (534)
T KOG2187|consen  352 TFRIS-PGAFFQTNTSAAEVLYSTIGEWAGLPAD--------KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE  422 (534)
T ss_pred             EEEEC-CchhhccCcHHHHHHHHHHHHHhCCCCC--------cEEEEEeecCCceehhhhccccceeeeecChhhcchhh
Confidence            55565 356883    344446666666655432        57999999999999999986  5667666666655554


Q ss_pred             HHHHHHcCCC
Q 019228          291 VQLTLERGLP  300 (344)
Q Consensus       291 Iq~A~eRGvp  300 (344)
                      . -|+..|+.
T Consensus       423 ~-nA~~Ngis  431 (534)
T KOG2187|consen  423 K-NAQINGIS  431 (534)
T ss_pred             h-cchhcCcc
Confidence            2 34455654

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=94.28  E-value=0.045  Score=54.92  Aligned_cols=75  Identities=20%  Similarity=0.290  Sum_probs=49.8

Q ss_pred             CCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHH---cCCCeEEeeccccCCCCCCCcccceEecccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLE---RGLPAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~e---RGvpa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+..++|+|.|+|..+..++.+  .+.++.     .....+-.+++   .|+.-+.+++ -+.+|=.|    +|++-.||
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~in-----fdlp~v~~~a~~~~~gV~~v~gdm-fq~~P~~d----aI~mkWiL  246 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGIN-----FDLPFVLAAAPYLAPGVEHVAGDM-FQDTPKGD----AIWMKWIL  246 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHhCCCCceee-----cCHHHHHhhhhhhcCCcceecccc-cccCCCcC----eEEEEeec
Confidence            3678999999999999888774  343333     33333322222   2355566665 34466655    99999999


Q ss_pred             cccCcccccc
Q 019228          328 VDWDQKGKCQ  337 (344)
Q Consensus       328 i~W~~~~g~~  337 (344)
                      ++|++.|=+|
T Consensus       247 hdwtDedcvk  256 (342)
T KOG3178|consen  247 HDWTDEDCVK  256 (342)
T ss_pred             ccCChHHHHH
Confidence            9999887443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=94.27  E-value=0.079  Score=52.79  Aligned_cols=61  Identities=16%  Similarity=0.092  Sum_probs=38.3

Q ss_pred             Ccccc----chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228          224 SLIFD----GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE  296 (344)
Q Consensus       224 gt~F~----g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e  296 (344)
                      +.||.    ..+..++.+.+.+...         ..++||++||+|.|+..|+...-   .+.+.|.++.+++.|++
T Consensus       182 ~sF~Q~N~~~~e~l~~~v~~~~~~~---------~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~  246 (362)
T PRK05031        182 NSFTQPNAAVNEKMLEWALDATKGS---------KGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQY  246 (362)
T ss_pred             CCeeccCHHHHHHHHHHHHHHhhcC---------CCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHH
Confidence            45773    2344555555555321         13699999999999998877521   33445666667666554

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=94.27  E-value=0.12  Score=48.56  Aligned_cols=87  Identities=15%  Similarity=0.244  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHH---HHH-HHHcCCC----eE
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ---VQL-TLERGLP----AM  302 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~---Iq~-A~eRGvp----a~  302 (344)
                      +..++.|.+.++..         ..+||.||||||--+.+++++=- .+...+.|..+..   |+. +.+.+++    .+
T Consensus        12 ~pIl~vL~~~l~~~---------~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~   81 (204)
T PF06080_consen   12 DPILEVLKQYLPDS---------GTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL   81 (204)
T ss_pred             hHHHHHHHHHhCcc---------CceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCe
Confidence            44567777777632         12599999999998888887611 1245666766554   221 2233432    22


Q ss_pred             EeeccccCCC------CCCCcccceEecccc
Q 019228          303 IGSFASKQLP------YPSLSFDMLHCARCG  327 (344)
Q Consensus       303 ~~~lda~rLP------FpD~SFDlVhcs~~L  327 (344)
                      .-++....-|      +..++||+|+|+..+
T Consensus        82 ~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~l  112 (204)
T PF06080_consen   82 ALDVSAPPWPWELPAPLSPESFDAIFCINML  112 (204)
T ss_pred             EeecCCCCCccccccccCCCCcceeeehhHH
Confidence            2232222122      345699999999887

The function of this family is unknown.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=94.25  E-value=0.082  Score=49.40  Aligned_cols=73  Identities=19%  Similarity=0.200  Sum_probs=48.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH-HcCCC------------------eEEeeccccCCCCCC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGLP------------------AMIGSFASKQLPYPS  315 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~-eRGvp------------------a~~~~lda~rLPFpD  315 (344)
                      .+||+.|||.|.-+.+|++++.   .+.+.|+++..++.|. ++++.                  ++.++  --.++-.+
T Consensus        39 ~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD--fF~l~~~~  113 (218)
T PF05724_consen   39 GRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGD--FFELPPED  113 (218)
T ss_dssp             EEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES---TTTGGGSC
T ss_pred             CeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcc--cccCChhh
Confidence            4899999999999999999974   4556788888887763 44431                  12233  23444333


Q ss_pred             -CcccceEecccccccCc
Q 019228          316 -LSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       316 -~SFDlVhcs~~Li~W~~  332 (344)
                       +.||+|+=..+++-..+
T Consensus       114 ~g~fD~iyDr~~l~Alpp  131 (218)
T PF05724_consen  114 VGKFDLIYDRTFLCALPP  131 (218)
T ss_dssp             HHSEEEEEECSSTTTS-G
T ss_pred             cCCceEEEEecccccCCH
Confidence             47999998777755443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=94.10  E-value=0.22  Score=49.24  Aligned_cols=61  Identities=26%  Similarity=0.457  Sum_probs=39.1

Q ss_pred             CeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHc--CCC------eEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLER--GLP------AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eR--Gvp------a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      ..||.||-|||.++..|++.+  |.++.+.+.     |+..-.+|  |.|      ++++++-...+|    .||.++++
T Consensus        60 D~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dpr-----mvael~krv~gtp~~~kLqV~~gD~lK~d~P----~fd~cVsN  130 (315)
T KOG0820|consen   60 DVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPR-----MVAELEKRVQGTPKSGKLQVLHGDFLKTDLP----RFDGCVSN  130 (315)
T ss_pred             CEEEEeCCCCCHHHHHHHHhcCeEEEEecCcH-----HHHHHHHHhcCCCccceeeEEecccccCCCc----ccceeecc
Confidence            589999999999999999975  444444444     44433344  444      445543233334    48888875

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=93.85  E-value=0.13  Score=48.85  Aligned_cols=82  Identities=12%  Similarity=0.108  Sum_probs=46.3

Q ss_pred             CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC------CCeEEeeccccCCCCCCCcccceEeccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG------vpa~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      ...++||.|+|.|-.+..|+-.-...+  ...+..+..++.|.+.-      +.-.+. ...+..--+.+.||+|+|.-|
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~V--DlVEp~~~Fl~~a~~~l~~~~~~v~~~~~-~gLQ~f~P~~~~YDlIW~QW~  131 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEV--DLVEPVEKFLEQAKEYLGKDNPRVGEFYC-VGLQDFTPEEGKYDLIWIQWC  131 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEE--EEEES-HHHHHHHHHHTCCGGCCEEEEEE-S-GGG----TT-EEEEEEES-
T ss_pred             CcceEEecccccchhHHHHHHHhcCEe--EEeccCHHHHHHHHHHhcccCCCcceEEe-cCHhhccCCCCcEeEEEehHh
Confidence            356899999999999987765433322  33566777777777431      111222 234444444679999999999


Q ss_pred             ccccCcccccc
Q 019228          327 GVDWDQKGKCQ  337 (344)
Q Consensus       327 Li~W~~~~g~~  337 (344)
                      +.|-+..|=++
T Consensus       132 lghLTD~dlv~  142 (218)
T PF05891_consen  132 LGHLTDEDLVA  142 (218)
T ss_dssp             GGGS-HHHHHH
T ss_pred             hccCCHHHHHH
Confidence            98888766443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=92.92  E-value=0.14  Score=53.38  Aligned_cols=79  Identities=14%  Similarity=0.130  Sum_probs=47.2

Q ss_pred             CCCeEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHHcCCCeE-Eeecccc--CCCCCCCcccceEecc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERGLPAM-IGSFASK--QLPYPSLSFDMLHCAR  325 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~eRGvpa~-~~~lda~--rLPFpD~SFDlVhcs~  325 (344)
                      ....+||||||.|.|...++..    +++++.+...-+..+ +..+.++++... +...++.  .--|+++++|.|+...
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~-~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F  425 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANV-LKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF  425 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHH-HHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence            4568999999999999999876    444544433222221 233444565422 1111222  1238899999999964


Q ss_pred             cccccCcc
Q 019228          326 CGVDWDQK  333 (344)
Q Consensus       326 ~Li~W~~~  333 (344)
                       -.+|...
T Consensus       426 -PDPWpKk  432 (506)
T PRK01544        426 -PDPWIKN  432 (506)
T ss_pred             -CCCCCCC
Confidence             4588653

>PLN02476 O-methyltransferase

Probab=92.90  E-value=0.11  Score=50.67  Aligned_cols=67  Identities=12%  Similarity=0.155  Sum_probs=38.3

Q ss_pred             CCeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHH----cCCC----eEEeeccccCCCC-----CCCc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLE----RGLP----AMIGSFASKQLPY-----PSLS  317 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~e----RGvp----a~~~~lda~rLPF-----pD~S  317 (344)
                      .++||+|||++|..+.+|+..   +..   +...|..+...+.|++    .|+.    +..+++ .+-||-     .+++
T Consensus       119 ak~VLEIGT~tGySal~lA~al~~~G~---V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA-~e~L~~l~~~~~~~~  194 (278)
T PLN02476        119 AERCIEVGVYTGYSSLAVALVLPESGC---LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA-AESLKSMIQNGEGSS  194 (278)
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCE---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH-HHHHHHHHhcccCCC
Confidence            468999999999999888763   211   2223444444444433    3543    334432 122221     2468


Q ss_pred             ccceEec
Q 019228          318 FDMLHCA  324 (344)
Q Consensus       318 FDlVhcs  324 (344)
                      ||+|+.-
T Consensus       195 FD~VFID  201 (278)
T PLN02476        195 YDFAFVD  201 (278)
T ss_pred             CCEEEEC
Confidence            9999864

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=92.83  E-value=0.11  Score=43.42  Aligned_cols=20  Identities=20%  Similarity=0.406  Sum_probs=17.3

Q ss_pred             eEEEECCccchhhHHHhhCC
Q 019228          256 TILDIGCGYGSFGAHLFSKE  275 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer~  275 (344)
                      ++||||||+|.++..+++..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~   20 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG   20 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC
Confidence            48999999999999888763

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.41  E-value=0.4  Score=45.89  Aligned_cols=71  Identities=17%  Similarity=0.209  Sum_probs=41.5

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----------------C-CCeEEeeccccCCCCCCC
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----------------G-LPAMIGSFASKQLPYPSL  316 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----------------G-vpa~~~~lda~rLPFpD~  316 (344)
                      -..||||.|+|.+++.++.. +.++....+.+..++.|+.+.+.                + +.+.  +.|.+..--+.+
T Consensus        84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv--vGDgr~g~~e~a  161 (237)
T KOG1661|consen   84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV--VGDGRKGYAEQA  161 (237)
T ss_pred             cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE--eCCccccCCccC
Confidence            36999999999888765532 11111113344444444443321                2 2233  345666666678


Q ss_pred             cccceEecccc
Q 019228          317 SFDMLHCARCG  327 (344)
Q Consensus       317 SFDlVhcs~~L  327 (344)
                      .||.|||....
T Consensus       162 ~YDaIhvGAaa  172 (237)
T KOG1661|consen  162 PYDAIHVGAAA  172 (237)
T ss_pred             CcceEEEccCc
Confidence            99999998654

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=92.36  E-value=0.51  Score=44.72  Aligned_cols=79  Identities=16%  Similarity=0.227  Sum_probs=49.0

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHc-----CCCeE
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLER-----GLPAM  302 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eR-----Gvpa~  302 (344)
                      ....++.|.+.+....        ...|||||.|+|.++..|+++.  ++++     +.++...+.-.++     .+.++
T Consensus        15 ~~~~~~~Iv~~~~~~~--------~~~VlEiGpG~G~lT~~L~~~~~~v~~v-----E~d~~~~~~L~~~~~~~~~~~vi   81 (262)
T PF00398_consen   15 DPNIADKIVDALDLSE--------GDTVLEIGPGPGALTRELLKRGKRVIAV-----EIDPDLAKHLKERFASNPNVEVI   81 (262)
T ss_dssp             HHHHHHHHHHHHTCGT--------TSEEEEESSTTSCCHHHHHHHSSEEEEE-----ESSHHHHHHHHHHCTTCSSEEEE
T ss_pred             CHHHHHHHHHhcCCCC--------CCEEEEeCCCCccchhhHhcccCcceee-----cCcHhHHHHHHHHhhhcccceee
Confidence            3566888888887543        2589999999999999998864  4443     4445555554443     12233


Q ss_pred             EeeccccCCCCCC---CcccceEe
Q 019228          303 IGSFASKQLPYPS---LSFDMLHC  323 (344)
Q Consensus       303 ~~~lda~rLPFpD---~SFDlVhc  323 (344)
                      .+  |+..+.+++   +.-..|++
T Consensus        82 ~~--D~l~~~~~~~~~~~~~~vv~  103 (262)
T PF00398_consen   82 NG--DFLKWDLYDLLKNQPLLVVG  103 (262)
T ss_dssp             ES---TTTSCGGGHCSSSEEEEEE
T ss_pred             ec--chhccccHHhhcCCceEEEE
Confidence            44  455565555   34444554

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=92.33  E-value=0.33  Score=47.19  Aligned_cols=81  Identities=21%  Similarity=0.302  Sum_probs=53.4

Q ss_pred             CeEEEECCccc----hhhHHHhhCCce----EEEcccccccHHHHHHHHHc---------CCCe-----EE--e------
Q 019228          255 RTILDIGCGYG----SFGAHLFSKELL----TMCIANYEASGSQVQLTLER---------GLPA-----MI--G------  304 (344)
Q Consensus       255 r~VLDVGCGtG----sfaa~Laer~V~----~~sIa~~D~sea~Iq~A~eR---------Gvpa-----~~--~------  304 (344)
                      -+|.=+||+||    |+|..|.+....    .+.|.+.|++...++.|.+-         +++.     ++  +      
T Consensus        98 irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~  177 (268)
T COG1352          98 IRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYR  177 (268)
T ss_pred             eEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEE
Confidence            47999999999    677777765432    46788889999888887631         2221     01  0      


Q ss_pred             ---------eccccCC---CCCCCcccceEecccccccCcccc
Q 019228          305 ---------SFASKQL---PYPSLSFDMLHCARCGVDWDQKGK  335 (344)
Q Consensus       305 ---------~lda~rL---PFpD~SFDlVhcs~~Li~W~~~~g  335 (344)
                               .+.-++|   ++..+-||+|+|.++||.+....-
T Consensus       178 v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q  220 (268)
T COG1352         178 VKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQ  220 (268)
T ss_pred             EChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHH
Confidence                     0011122   225577999999999999877543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=92.26  E-value=0.26  Score=47.15  Aligned_cols=97  Identities=16%  Similarity=0.267  Sum_probs=48.6

Q ss_pred             CCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC------CceEEEcccccccHHHHHHHHH
Q 019228          223 ASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQVQLTLE  296 (344)
Q Consensus       223 ggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer------~V~~~sIa~~D~sea~Iq~A~e  296 (344)
                      .|.+|.- ....+.+.+++....        ..+|||-.||+|.|.....++      ......+.+.|+.+..+..|.-
T Consensus        25 ~G~~~TP-~~i~~l~~~~~~~~~--------~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~   95 (311)
T PF02384_consen   25 LGQFYTP-REIVDLMVKLLNPKK--------GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKL   95 (311)
T ss_dssp             CGGC----HHHHHHHHHHHTT-T--------TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHH
T ss_pred             cceeehH-HHHHHHHHhhhhccc--------cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHh
Confidence            3445532 334566777775432        247999999999997765541      0112345556666666555542


Q ss_pred             ----cCCC-----eEEeeccccCCCCC--CCcccceEecccccccCcc
Q 019228          297 ----RGLP-----AMIGSFASKQLPYP--SLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       297 ----RGvp-----a~~~~lda~rLPFp--D~SFDlVhcs~~Li~W~~~  333 (344)
                          +++.     ...++  +-..+..  ...||+|++.   -+|...
T Consensus        96 nl~l~~~~~~~~~i~~~d--~l~~~~~~~~~~~D~ii~N---PPf~~~  138 (311)
T PF02384_consen   96 NLLLHGIDNSNINIIQGD--SLENDKFIKNQKFDVIIGN---PPFGSK  138 (311)
T ss_dssp             HHHHTTHHCBGCEEEES---TTTSHSCTST--EEEEEEE-----CTCE
T ss_pred             hhhhhccccccccccccc--cccccccccccccccccCC---CCcccc
Confidence                2321     23333  3223332  5899999996   355544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=92.21  E-value=0.28  Score=43.16  Aligned_cols=31  Identities=19%  Similarity=0.397  Sum_probs=23.1

Q ss_pred             CCeEEEECCccchhhHHHhhCC-----ceEEEcccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSKE-----LLTMCIANY  284 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~-----V~~~sIa~~  284 (344)
                      ..++||+||++|.|+.+++++.     |.++++.+.
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            4689999999999999999886     344554443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=92.18  E-value=0.41  Score=46.51  Aligned_cols=87  Identities=17%  Similarity=0.207  Sum_probs=52.2

Q ss_pred             HHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--eEEeecc
Q 019228          235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFA  307 (344)
Q Consensus       235 d~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~ld  307 (344)
                      -.|...+.+..|        .+|||+|.|+|.++++|+.. +-.+ .+...+..++..+.|++.    ++.  +.+..-|
T Consensus        84 ~~I~~~~gi~pg--------~rVlEAGtGSG~lt~~La~~vg~~G-~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D  154 (256)
T COG2519          84 GYIVARLGISPG--------SRVLEAGTGSGALTAYLARAVGPEG-HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD  154 (256)
T ss_pred             HHHHHHcCCCCC--------CEEEEcccCchHHHHHHHHhhCCCc-eEEEEEecHHHHHHHHHHHHHhccccceEEEecc
Confidence            345666655443        58999999999999999852 1111 223356666666666643    321  2222234


Q ss_pred             ccCCCCCCCcccceEecccccccCc
Q 019228          308 SKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       308 a~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      ....-+++ .||+|+- ...-+|.-
T Consensus       155 v~~~~~~~-~vDav~L-Dmp~PW~~  177 (256)
T COG2519         155 VREGIDEE-DVDAVFL-DLPDPWNV  177 (256)
T ss_pred             cccccccc-ccCEEEE-cCCChHHH
Confidence            44444555 9999987 44566754

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=92.15  E-value=0.12  Score=52.13  Aligned_cols=68  Identities=16%  Similarity=0.167  Sum_probs=41.6

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||++||+|.++..++.. ++  ..+...|.++..++.+++    .++. ..+...|+..+....+.||+|..-
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD  132 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID  132 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence            37999999999999998654 42  134446777766665543    2443 112223444432214679999874

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=91.81  E-value=0.12  Score=49.58  Aligned_cols=96  Identities=15%  Similarity=0.159  Sum_probs=59.4

Q ss_pred             ecCCCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC
Q 019228          220 FRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL  299 (344)
Q Consensus       220 FpGggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv  299 (344)
                      |-|.|.||-   .--+++++++..++ -.|.+.. .++||+|.|.|..+.+++..--   .+-...++..|...-+.++.
T Consensus        84 ~lgrGsMFi---fSe~QF~klL~i~~-p~w~~~~-~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk~y  155 (288)
T KOG3987|consen   84 FLGRGSMFI---FSEEQFRKLLVIGG-PAWGQEP-VTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKKNY  155 (288)
T ss_pred             ccccCceEE---ecHHHHHHHHhcCC-CccCCCC-eeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhcCC
Confidence            556677772   12356777777653 3676543 4799999999999988876411   12335677778766666654


Q ss_pred             CeEEeeccccCCCCCCCcccceEecccc
Q 019228          300 PAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       300 pa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+ ++.++-.+   -|=.||+|.|-..|
T Consensus       156 nV-l~~~ew~~---t~~k~dli~clNlL  179 (288)
T KOG3987|consen  156 NV-LTEIEWLQ---TDVKLDLILCLNLL  179 (288)
T ss_pred             ce-eeehhhhh---cCceeehHHHHHHH
Confidence            33 22222221   23358999997665

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=91.81  E-value=0.48  Score=49.04  Aligned_cols=67  Identities=13%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             CeEEEECCccchhhHHHhhC------CceEEEcccccccHHHH-HHHHHcC----CCeEEeeccccCCCCCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQV-QLTLERG----LPAMIGSFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer------~V~~~sIa~~D~sea~I-q~A~eRG----vpa~~~~lda~rLPFpD~SFDlVhc  323 (344)
                      .+|||||||+|-+...-++.      .+.+..+.........+ +...+.+    |.++.+++  +.+..|. ..|+|+|
T Consensus       188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~--r~v~lpe-kvDIIVS  264 (448)
T PF05185_consen  188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM--REVELPE-KVDIIVS  264 (448)
T ss_dssp             -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T--TTSCHSS--EEEEEE
T ss_pred             eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc--cCCCCCC-ceeEEEE
Confidence            57999999999886544332      12333333322211111 1222333    34455654  4554444 8999998


Q ss_pred             c
Q 019228          324 A  324 (344)
Q Consensus       324 s  324 (344)
                      -
T Consensus       265 E  265 (448)
T PF05185_consen  265 E  265 (448)
T ss_dssp             -
T ss_pred             e
Confidence            5

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=91.75  E-value=0.34  Score=45.04  Aligned_cols=73  Identities=18%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--CCCeEEeeccccCC-----CCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GLPAMIGSFASKQL-----PYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--Gvpa~~~~lda~rL-----PFpD~SFDlVhcs~~L  327 (344)
                      --||.+|-|||-++..++++++.--++.....+.+.+..-.++  ++.++-+  |+..|     .+.+.-||.|+|.-=+
T Consensus        50 lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~g--da~~l~~~l~e~~gq~~D~viS~lPl  127 (194)
T COG3963          50 LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIING--DAFDLRTTLGEHKGQFFDSVISGLPL  127 (194)
T ss_pred             CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCcccccc--chhhHHHHHhhcCCCeeeeEEecccc
Confidence            3699999999999999999877655666667777665444343  2333333  23333     4788999999997544


Q ss_pred             cc
Q 019228          328 VD  329 (344)
Q Consensus       328 i~  329 (344)
                      ..
T Consensus       128 l~  129 (194)
T COG3963         128 LN  129 (194)
T ss_pred             cc
Confidence            33

>PLN02823 spermine synthase

Probab=91.62  E-value=0.49  Score=47.23  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=46.3

Q ss_pred             CCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC-----------CCeEEeeccccCCCCCCCcccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG-----------LPAMIGSFASKQLPYPSLSFDM  320 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG-----------vpa~~~~lda~rLPFpD~SFDl  320 (344)
                      ..++||-||+|.|..+..+++. .+  ..+...+++++.++.|++.-           +.+.++|. .+-|.-.+++||+
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da-~~~L~~~~~~yDv  179 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA-RAELEKRDEKFDV  179 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh-HHHHhhCCCCccE
Confidence            4578999999999999888775 33  24455688888888887541           11233332 1223445688999


Q ss_pred             eEec
Q 019228          321 LHCA  324 (344)
Q Consensus       321 Vhcs  324 (344)
                      |++-
T Consensus       180 Ii~D  183 (336)
T PLN02823        180 IIGD  183 (336)
T ss_pred             EEec
Confidence            9985

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=91.57  E-value=0.82  Score=42.52  Aligned_cols=99  Identities=12%  Similarity=0.116  Sum_probs=48.0

Q ss_pred             ccccceeeecCCCcccc-chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhh--CCceEEEcccccccH
Q 019228          212 MLEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS--KELLTMCIANYEASG  288 (344)
Q Consensus       212 ~~eg~~~~FpGggt~F~-g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Lae--r~V~~~sIa~~D~se  288 (344)
                      .+.|=.+.+.-.-.||+ +...--.+|.+.+.  +        ..+|||+-||.|.|+..++.  +...++.   .|..+
T Consensus        69 ~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~--~--------~e~VlD~faGIG~f~l~~ak~~~~~~V~A---~d~Np  135 (200)
T PF02475_consen   69 KENGIRFKVDLSKVYFSPRLSTERRRIANLVK--P--------GEVVLDMFAGIGPFSLPIAKHGKAKRVYA---VDLNP  135 (200)
T ss_dssp             EETTEEEEEETTTS---GGGHHHHHHHHTC----T--------T-EEEETT-TTTTTHHHHHHHT-SSEEEE---EES-H
T ss_pred             EeCCEEEEEccceEEEccccHHHHHHHHhcCC--c--------ceEEEEccCCccHHHHHHhhhcCccEEEE---ecCCH
Confidence            44555555555557884 54444455655543  2        25899999999999999887  4433333   33333


Q ss_pred             HHHH----HHHHcCCC--eEEeeccccCCCCCCCcccceEec
Q 019228          289 SQVQ----LTLERGLP--AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       289 a~Iq----~A~eRGvp--a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      ..++    .+..-++.  +..-..|+..++- .+.||-|++.
T Consensus       136 ~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~  176 (200)
T PF02475_consen  136 DAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN  176 (200)
T ss_dssp             HHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred             HHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence            3322    22222332  2222345655544 8999988886

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=91.29  E-value=0.33  Score=49.55  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=19.8

Q ss_pred             CCCCCCCcccceEecccccccCcc
Q 019228          310 QLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       310 rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      || ||++|.+++||+.+| ||...
T Consensus       156 RL-fP~~Slh~~~Ss~sl-HWLS~  177 (386)
T PLN02668        156 RL-FPARSIDVFHSAFSL-HWLSQ  177 (386)
T ss_pred             cc-cCCCceEEEEeeccc-eeccc
Confidence            44 999999999999999 99885

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=90.55  E-value=0.51  Score=45.31  Aligned_cols=87  Identities=17%  Similarity=0.237  Sum_probs=50.3

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC----eEEe
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP----AMIG  304 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~  304 (344)
                      +..|..++.+.+|        .+||+.|.|+|+++..|+.. +-.+ .+...+.++...+.|++.    |+.    +...
T Consensus        29 ~~~I~~~l~i~pG--------~~VlEaGtGSG~lt~~l~r~v~p~G-~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~   99 (247)
T PF08704_consen   29 ISYILMRLDIRPG--------SRVLEAGTGSGSLTHALARAVGPTG-HVYTYEFREDRAEKARKNFERHGLDDNVTVHHR   99 (247)
T ss_dssp             HHHHHHHTT--TT---------EEEEE--TTSHHHHHHHHHHTTTS-EEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred             HHHHHHHcCCCCC--------CEEEEecCCcHHHHHHHHHHhCCCe-EEEccccCHHHHHHHHHHHHHcCCCCCceeEec
Confidence            5567777776655        58999999999999988863 1111 223367788777777653    443    3344


Q ss_pred             eccccCCCCC---CCcccceEecccccccCc
Q 019228          305 SFASKQLPYP---SLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       305 ~lda~rLPFp---D~SFDlVhcs~~Li~W~~  332 (344)
                      ++  ..-.|+   ++.||.|+- ..--+|..
T Consensus       100 Dv--~~~g~~~~~~~~~DavfL-Dlp~Pw~~  127 (247)
T PF08704_consen  100 DV--CEEGFDEELESDFDAVFL-DLPDPWEA  127 (247)
T ss_dssp             -G--GCG--STT-TTSEEEEEE-ESSSGGGG
T ss_pred             ce--ecccccccccCcccEEEE-eCCCHHHH
Confidence            43  333443   378999987 45567754

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=89.85  E-value=0.31  Score=44.51  Aligned_cols=63  Identities=16%  Similarity=0.304  Sum_probs=38.5

Q ss_pred             CeEEEECCccchhh--HHHhhC-CceEEEcccccccHHHHHHHH----HcC--CCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFG--AHLFSK-ELLTMCIANYEASGSQVQLTL----ERG--LPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfa--a~Laer-~V~~~sIa~~D~sea~Iq~A~----eRG--vpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+++|+|||.|.+.  ..+.+. -|.+     .|+.++.++.+.    |-.  +...++++  ..+-+..+.||.++..
T Consensus        50 kkl~DLgcgcGmLs~a~sm~~~e~vlG-----fDIdpeALEIf~rNaeEfEvqidlLqcdi--ldle~~~g~fDtaviN  121 (185)
T KOG3420|consen   50 KKLKDLGCGCGMLSIAFSMPKNESVLG-----FDIDPEALEIFTRNAEEFEVQIDLLQCDI--LDLELKGGIFDTAVIN  121 (185)
T ss_pred             cchhhhcCchhhhHHHhhcCCCceEEe-----eecCHHHHHHHhhchHHhhhhhheeeeec--cchhccCCeEeeEEec
Confidence            57999999999665  333332 3444     455555554433    222  33455554  4667777999988765

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=89.83  E-value=0.42  Score=49.58  Aligned_cols=43  Identities=21%  Similarity=0.265  Sum_probs=30.3

Q ss_pred             CeEEEECCccchhhHHHhhCC-------ceEEEcccccccHHHHHHHHHc
Q 019228          255 RTILDIGCGYGSFGAHLFSKE-------LLTMCIANYEASGSQVQLTLER  297 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~-------V~~~sIa~~D~sea~Iq~A~eR  297 (344)
                      .+|||.+||+|.|...++++.       .....+.+.|+++..+..+...
T Consensus        33 ~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~   82 (524)
T TIGR02987        33 TKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL   82 (524)
T ss_pred             eEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence            479999999999987765431       0125667788888777766543

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=87.90  E-value=1.5  Score=43.61  Aligned_cols=89  Identities=19%  Similarity=0.278  Sum_probs=57.1

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC----eEEee
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP----AMIGS  305 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~~  305 (344)
                      |.+|..++....|        .+||..|.|.|++.-+++..-..+-.+-..|+|+...+.|+|.    |++    +.+.+
T Consensus        94 ia~I~~~L~i~PG--------svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD  165 (314)
T KOG2915|consen   94 IAMILSMLEIRPG--------SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD  165 (314)
T ss_pred             HHHHHHHhcCCCC--------CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence            6778888876655        5899999999999988876521111334467788777667653    443    34444


Q ss_pred             ccccCCCCCCCcccceEecccccccC
Q 019228          306 FASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      +-..-.+-.+..+|.|+-- ..-+|.
T Consensus       166 Vc~~GF~~ks~~aDaVFLD-lPaPw~  190 (314)
T KOG2915|consen  166 VCGSGFLIKSLKADAVFLD-LPAPWE  190 (314)
T ss_pred             cccCCccccccccceEEEc-CCChhh
Confidence            3322333346889999873 445664

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=87.82  E-value=1.1  Score=41.05  Aligned_cols=67  Identities=28%  Similarity=0.368  Sum_probs=37.6

Q ss_pred             eEEEECCccchhhHHHhh--CCceEEEcccccccHHHHH----HHHHcCCC-eEEeeccccCCCCCCCcccceEeccc
Q 019228          256 TILDIGCGYGSFGAHLFS--KELLTMCIANYEASGSQVQ----LTLERGLP-AMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Lae--r~V~~~sIa~~D~sea~Iq----~A~eRGvp-a~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      ++||||+|-|.-|.-|+=  .+..   +...|.....+.    .+.+-+++ +.+-...++. +-...+||+|++..+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~---~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQ---VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSE---EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCc---EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh
Confidence            799999999987766542  2222   223344443332    23344665 3222223344 678899999999754

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=87.59  E-value=1.3  Score=47.99  Aligned_cols=45  Identities=9%  Similarity=0.049  Sum_probs=29.3

Q ss_pred             EcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCC--CCcccceEec
Q 019228          280 CIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYP--SLSFDMLHCA  324 (344)
Q Consensus       280 sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFp--D~SFDlVhcs  324 (344)
                      .+.+.|+++.+++.|++.    |+.  +.+...|..+++.+  .++||+|+|+
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN  310 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN  310 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence            467788888888777653    553  22333345566555  4689999996

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=87.49  E-value=1.8  Score=41.01  Aligned_cols=68  Identities=19%  Similarity=0.240  Sum_probs=41.7

Q ss_pred             CCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC----eEEeecccc-CCC-CCCCcccceE
Q 019228          254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP----AMIGSFASK-QLP-YPSLSFDMLH  322 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~~~lda~-rLP-FpD~SFDlVh  322 (344)
                      .++||.||.+.|.-+.+|+.. .-.+ .+...|..+++.+.|++.    |+.    ...+ .|+. -|- +.+++||+|+
T Consensus        60 ~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliF  137 (219)
T COG4122          60 PKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVF  137 (219)
T ss_pred             CceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEE
Confidence            468999999999888888764 1011 233356667776666642    443    2231 1221 122 6789999998


Q ss_pred             e
Q 019228          323 C  323 (344)
Q Consensus       323 c  323 (344)
                      -
T Consensus       138 I  138 (219)
T COG4122         138 I  138 (219)
T ss_pred             E
Confidence            5

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=85.88  E-value=2  Score=40.51  Aligned_cols=65  Identities=22%  Similarity=0.277  Sum_probs=36.7

Q ss_pred             CCeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHH----HHHHcCC--CeEEeeccccCCCCCCCcccceEec
Q 019228          254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQ----LTLERGL--PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq----~A~eRGv--pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      ...+|+||||+|-....|++.   +++.+.   .|+.+...+    -|+-.++  ..+..++-. .|  ..++.|+++-+
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~la---tDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l--~~~~VDvLvfN  117 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLA---TDINPEALEATLETARCNRVHIDVVRTDLLS-GL--RNESVDVLVFN  117 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEE---ecCCHHHHHHHHHHHHhcCCccceeehhHHh-hh--ccCCccEEEEC
Confidence            468999999999888888875   343333   355544332    2333333  334444311 11  22777776654

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=85.49  E-value=1.5  Score=45.01  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=17.1

Q ss_pred             CCeEEEECCccchhhHHHhhCC
Q 019228          254 VRTILDIGCGYGSFGAHLFSKE  275 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~  275 (344)
                      .++|||||||.|-+..+-++.+
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAG  199 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAG  199 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhC
Confidence            3689999999997776666554

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=83.62  E-value=1.9  Score=40.06  Aligned_cols=67  Identities=21%  Similarity=0.239  Sum_probs=38.2

Q ss_pred             CCeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHH----cCC----CeEEeeccccCCC-----CCCCc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLE----RGL----PAMIGSFASKQLP-----YPSLS  317 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~e----RGv----pa~~~~lda~rLP-----FpD~S  317 (344)
                      .++||+|||++|.-+.+|++.   +...++   .+..+...+.|++    .|+    .+..++. .+-||     .+.+.
T Consensus        46 ~k~vLEIGt~~GySal~la~~l~~~g~i~t---iE~~~~~~~~A~~~~~~ag~~~~I~~~~gda-~~~l~~l~~~~~~~~  121 (205)
T PF01596_consen   46 PKRVLEIGTFTGYSALWLAEALPEDGKITT---IEIDPERAEIARENFRKAGLDDRIEVIEGDA-LEVLPELANDGEEGQ  121 (205)
T ss_dssp             -SEEEEESTTTSHHHHHHHHTSTTTSEEEE---EESSHHHHHHHHHHHHHTTGGGGEEEEES-H-HHHHHHHHHTTTTTS
T ss_pred             CceEEEeccccccHHHHHHHhhcccceEEE---ecCcHHHHHHHHHHHHhcCCCCcEEEEEecc-HhhHHHHHhccCCCc
Confidence            468999999999888888864   333333   3444455555533    243    3444432 11122     12468


Q ss_pred             ccceEec
Q 019228          318 FDMLHCA  324 (344)
Q Consensus       318 FDlVhcs  324 (344)
                      ||+|+.-
T Consensus       122 fD~VFiD  128 (205)
T PF01596_consen  122 FDFVFID  128 (205)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEc
Confidence            9999864

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=83.59  E-value=1.2  Score=42.60  Aligned_cols=20  Identities=15%  Similarity=0.047  Sum_probs=17.0

Q ss_pred             CCeEEEECCccchhhHHHhh
Q 019228          254 VRTILDIGCGYGSFGAHLFS  273 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Lae  273 (344)
                      .++||+||+++|.-+.+|+.
T Consensus        80 ak~iLEiGT~~GySal~la~   99 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATAL   99 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHh
Confidence            46899999999988887775

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=82.70  E-value=0.75  Score=46.54  Aligned_cols=71  Identities=18%  Similarity=0.256  Sum_probs=42.4

Q ss_pred             eEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHcCCC----eEEeeccccCCCCCCCcccceEeccccc
Q 019228          256 TILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLP----AMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eRGvp----a~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+||+|||.|-...+...-   ++++++.....+..++. .+...++.    .+++  +....||+|++||.|-+..+..
T Consensus       113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~-~~~~~~l~~k~~~~~~--~~~~~~fedn~fd~v~~ld~~~  189 (364)
T KOG1269|consen  113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANE-LAKKAYLDNKCNFVVA--DFGKMPFEDNTFDGVRFLEVVC  189 (364)
T ss_pred             cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHH-HHHHHHhhhhcceehh--hhhcCCCCccccCcEEEEeecc
Confidence            6899999999887776653   44333322222222221 11112221    2333  4568899999999999988774


Q ss_pred             c
Q 019228          329 D  329 (344)
Q Consensus       329 ~  329 (344)
                      +
T Consensus       190 ~  190 (364)
T KOG1269|consen  190 H  190 (364)
T ss_pred             c
Confidence            4

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=82.18  E-value=1.4  Score=43.23  Aligned_cols=41  Identities=20%  Similarity=0.266  Sum_probs=29.3

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER  297 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR  297 (344)
                      ..+|||||-.|.+++.++.. +.  ..+-+.|+.+..|+.|.+.
T Consensus        60 ~~~LDIGCNsG~lt~~iak~F~~--r~iLGvDID~~LI~~Ark~  101 (288)
T KOG2899|consen   60 KQALDIGCNSGFLTLSIAKDFGP--RRILGVDIDPVLIQRARKE  101 (288)
T ss_pred             ceeEeccCCcchhHHHHHHhhcc--ceeeEeeccHHHHHHHHHh
Confidence            47999999999999988875 21  1234456677777777653

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=81.83  E-value=1.9  Score=39.06  Aligned_cols=68  Identities=21%  Similarity=0.422  Sum_probs=35.8

Q ss_pred             eEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHH----cCC----CeEEeeccc--cCCCCCCCcccceEe
Q 019228          256 TILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLE----RGL----PAMIGSFAS--KQLPYPSLSFDMLHC  323 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~e----RGv----pa~~~~lda--~rLPFpD~SFDlVhc  323 (344)
                      +|||+-||.|.-+..++...  |+++     |.++..++.|+.    -|+    .++.++.-.  .++..... ||+|++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viai-----did~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~-~D~vFl   75 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAI-----DIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKI-FDVVFL   75 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEE-----ES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEE-----ECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccccc-ccEEEE
Confidence            79999999999999999874  4444     455555555442    343    345555311  12332222 899998


Q ss_pred             cccccccCc
Q 019228          324 ARCGVDWDQ  332 (344)
Q Consensus       324 s~~Li~W~~  332 (344)
                      +   -+|--
T Consensus        76 S---PPWGG   81 (163)
T PF09445_consen   76 S---PPWGG   81 (163)
T ss_dssp             ------BSS
T ss_pred             C---CCCCC
Confidence            7   37754

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=81.55  E-value=1  Score=44.02  Aligned_cols=86  Identities=14%  Similarity=0.235  Sum_probs=51.2

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCc-eEEEcccccccHHHHHHHHH----c-----C
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKEL-LTMCIANYEASGSQVQLTLE----R-----G  298 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V-~~~sIa~~D~sea~Iq~A~e----R-----G  298 (344)
                      +.+.+.|.+.+.-..+..      ...+|||...|-|.+|..-++++. .++++.- |  +.-++.|.-    +     .
T Consensus       116 ~tdP~~Dt~~Kv~~V~~~------~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEk-d--p~VLeLa~lNPwSr~l~~~~  186 (287)
T COG2521         116 GTDPLEDTLAKVELVKVK------RGERVLDTCTGLGYTAIEALERGAIHVITVEK-D--PNVLELAKLNPWSRELFEIA  186 (287)
T ss_pred             CcCcHHHHHhhhheeccc------cCCEeeeeccCccHHHHHHHHcCCcEEEEEee-C--CCeEEeeccCCCCccccccc
Confidence            557777777775433211      125899999999999998888875 3334321 1  112222221    1     2


Q ss_pred             CCeEEeeccccCCCCCCCcccceEe
Q 019228          299 LPAMIGSFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       299 vpa~~~~lda~rLPFpD~SFDlVhc  323 (344)
                      +.+++|+.-.----|+|.|||+|+-
T Consensus       187 i~iilGD~~e~V~~~~D~sfDaIiH  211 (287)
T COG2521         187 IKIILGDAYEVVKDFDDESFDAIIH  211 (287)
T ss_pred             cEEecccHHHHHhcCCccccceEee
Confidence            4556665321123689999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
3cc8_A	230	Putative methyltransferase; structural genomics, j	3e-04

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 248 NFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFA 307
             I    + +LDIGC  G+ GA +         I   EA     +   E+    ++G   
Sbjct: 27  KHIKKEWKEVLDIGCSSGALGAAIKENGTRVSGI---EAFPEAAEQAKEKLDHVVLGDIE 83

Query: 308 SKQLPYPSLSFDMLHCA 324
           +  +PY    FD +   
Sbjct: 84  TMDMPYEEEQFDCVIFG 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.17
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.13
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.08
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.04
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.03
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.03
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.02
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.0
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.99
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.98
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.97
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.96
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.95
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.94
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.94
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.93
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.92
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.92
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.91
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.91
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.91
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.9
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.89
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.89
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.88
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.87
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.87
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.87
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.87
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.86
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.86
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.86
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.85
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.85
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.84
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.84
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.84
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.83
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.83
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.83
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.83
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.82
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.82
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.82
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.81
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.8
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.8
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.8
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.79
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.79
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.77
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.77
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.77
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.77
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.76
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.76
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.76
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.75
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.74
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.73
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.73
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.73
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.73
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.73
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.72
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.7
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.69
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.68
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.67
3ocj_A	305	Putative exported protein; structural genomics, PS	98.66
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.66
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.64
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.63
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.62
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.6
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.59
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.59
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.58
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.58
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.57
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.57
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.54
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.54
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.53
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.53
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.53
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.53
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.52
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.52
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.52
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.51
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.5
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.49
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.49
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.48
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.48
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.48
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.46
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.44
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.44
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.43
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.42
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.42
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.41
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.39
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.38
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.36
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.36
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.35
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.34
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.33
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.33
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.33
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.33
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.33
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.31
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.31
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.3
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.3
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.3
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.3
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.29
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.29
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.28
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.28
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.27
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.27
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.27
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.26
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.26
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.25
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.25
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.24
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.24
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.24
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.24
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.24
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.24
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.23
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.23
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.21
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.21
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.21
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.21
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.21
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.2
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.19
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.19
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.19
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.19
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.18
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.18
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.18
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.17
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.15
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.14
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.14
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.14
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.14
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.13
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.11
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.11
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.11
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.1
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.08
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.08
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.07
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.06
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.06
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.05
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.05
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.03
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.03
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.01
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.01
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.0
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.0
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.99
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.98
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.98
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.98
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.98
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.97
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.97
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	97.96
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.96
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.95
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.94
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	97.93
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.92
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.92
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.92
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.91
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.9
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.89
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.89
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	97.87
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.87
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.87
2o07_A	304	Spermidine synthase; structural genomics, structur	97.85
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.84
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.83
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.81
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.81
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.78
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.76
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.75
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.74
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	97.72
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.71
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.7
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.7
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.69
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	97.68
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.68
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.66
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.66
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.65
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.64
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.62
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.62
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.62
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.62
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.6
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.6
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.59
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.58
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.55
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.55
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.54
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.53
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.53
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.53
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.52
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.52
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.52
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.52
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.51
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.49
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.48
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.47
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.46
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.46
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.45
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.44
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.44
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.44
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.42
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.39
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.38
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.37
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.32
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.32
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.3
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.29
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.28
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.27
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.26
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.26
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.2
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.2
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.14
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.1
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.09
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	96.97
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.89
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	96.88
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.58
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.45
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	96.43
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.14
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	96.14
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	95.87
3lkd_A	542	Type I restriction-modification system methyltrans	95.85
3khk_A	544	Type I restriction-modification system methylation	95.83
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	95.43
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.4
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	95.36
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	95.27
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	94.74
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	94.03
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	93.61
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	92.97
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	92.9
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	92.04
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	91.46
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	89.74
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	89.72
3ufb_A	530	Type I restriction-modification system methyltran	89.6
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	87.45
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	87.16
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	84.86

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.17  E-value=3e-11  Score=111.78  Aligned_cols=87  Identities=17%  Similarity=0.193  Sum_probs=65.8

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCC
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL  311 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rL  311 (344)
                      ..++.|.+..+.          ..+|||||||+|.++..|++++.   .+.+.|++++|++.|+++ ..+.+...+++.+
T Consensus        28 ~l~~~l~~~~~~----------~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~-~~v~~~~~~~e~~   93 (257)
T 4hg2_A           28 ALFRWLGEVAPA----------RGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRH-PRVTYAVAPAEDT   93 (257)
T ss_dssp             HHHHHHHHHSSC----------SSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCC-TTEEEEECCTTCC
T ss_pred             HHHHHHHHhcCC----------CCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhc-CCceeehhhhhhh
Confidence            345666666552          24799999999999999999864   345578999999887544 2334444467899


Q ss_pred             CCCCCcccceEecccccccCcc
Q 019228          312 PYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       312 PFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      ||++++||+|+|..++ ||.+.
T Consensus        94 ~~~~~sfD~v~~~~~~-h~~~~  114 (257)
T 4hg2_A           94 GLPPASVDVAIAAQAM-HWFDL  114 (257)
T ss_dssp             CCCSSCEEEEEECSCC-TTCCH
T ss_pred             cccCCcccEEEEeeeh-hHhhH
Confidence            9999999999999988 78753

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.13  E-value=1.7e-10  Score=103.30  Aligned_cols=88  Identities=11%  Similarity=0.254  Sum_probs=65.4

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccc
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFAS  308 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda  308 (344)
                      ++.|.+.++...        ..+|||||||+|.++..|+++..   .+.+.|+++.+++.|+++    +++ +.+...|.
T Consensus        26 ~~~l~~~l~~~~--------~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~   94 (260)
T 1vl5_A           26 LAKLMQIAALKG--------NEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA   94 (260)
T ss_dssp             HHHHHHHHTCCS--------CCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred             HHHHHHHhCCCC--------CCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH
Confidence            556666666433        25899999999999999988753   455678888888877664    433 34444567


Q ss_pred             cCCCCCCCcccceEecccccccCc
Q 019228          309 KQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       309 ~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      ..+||++++||+|+|..++.+|..
T Consensus        95 ~~l~~~~~~fD~V~~~~~l~~~~d  118 (260)
T 1vl5_A           95 EQMPFTDERFHIVTCRIAAHHFPN  118 (260)
T ss_dssp             -CCCSCTTCEEEEEEESCGGGCSC
T ss_pred             HhCCCCCCCEEEEEEhhhhHhcCC
Confidence            889999999999999999977753

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.08  E-value=1.6e-10  Score=104.41  Aligned_cols=89  Identities=19%  Similarity=0.163  Sum_probs=69.0

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccC
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ  310 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~r  310 (344)
                      ..+.+.+.+.++...        ..+|||||||+|.++..|++.+.   .+.+.|+++.+++.|+++. .+.+...|.+.
T Consensus        20 ~~~~~~l~~~~~~~~--------~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~   87 (261)
T 3ege_A           20 IRIVNAIINLLNLPK--------GSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHP-QVEWFTGYAEN   87 (261)
T ss_dssp             HHHHHHHHHHHCCCT--------TCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCT-TEEEECCCTTS
T ss_pred             HHHHHHHHHHhCCCC--------CCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhcc-CCEEEECchhh
Confidence            456777888876433        36899999999999999998754   4556789999888776553 44444456788


Q ss_pred             CCCCCCcccceEecccccccC
Q 019228          311 LPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       311 LPFpD~SFDlVhcs~~Li~W~  331 (344)
                      +||++++||+|+|..++.++.
T Consensus        88 ~~~~~~~fD~v~~~~~l~~~~  108 (261)
T 3ege_A           88 LALPDKSVDGVISILAIHHFS  108 (261)
T ss_dssp             CCSCTTCBSEEEEESCGGGCS
T ss_pred             CCCCCCCEeEEEEcchHhhcc
Confidence            999999999999999987773

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.04  E-value=2.2e-10  Score=101.38  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=59.5

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC---CCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||||||+|.++..|+++ +.   .+.+.|+++.+++.|+++.   ..+.+...|...+||++++||+|+|..++.++
T Consensus        57 ~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  133 (266)
T 3ujc_A           57 SKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILAL  133 (266)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEEEEEESCGGGS
T ss_pred             CEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEEEeHHHHHHhc
Confidence            58999999999999999886 43   4556788999999998874   23344444677899999999999999999777


Q ss_pred             C
Q 019228          331 D  331 (344)
Q Consensus       331 ~  331 (344)
                      .
T Consensus       134 ~  134 (266)
T 3ujc_A          134 S  134 (266)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.03  E-value=2.5e-10  Score=98.14  Aligned_cols=76  Identities=20%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCcc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++...+.+-..|...+|+++++||+|+|..++.++...
T Consensus        43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  118 (203)
T 3h2b_A           43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG  118 (203)
T ss_dssp             SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred             CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence            4799999999999999998854   345578899999999887444444444567899999999999999999777533

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.03  E-value=1.2e-10  Score=102.27  Aligned_cols=75  Identities=12%  Similarity=-0.064  Sum_probs=57.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-----------------CCeEEeeccccCCCCCC-C
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------------LPAMIGSFASKQLPYPS-L  316 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-----------------vpa~~~~lda~rLPFpD-~  316 (344)
                      .+|||+|||+|.++.+|++++.   .+.+.|+++.|++.|+++.                 ..+.+-..|...+|+++ +
T Consensus        24 ~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~  100 (203)
T 1pjz_A           24 ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG  100 (203)
T ss_dssp             CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred             CEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence            5899999999999999998764   4566789999998887751                 12233334567899987 8


Q ss_pred             cccceEecccccccCc
Q 019228          317 SFDMLHCARCGVDWDQ  332 (344)
Q Consensus       317 SFDlVhcs~~Li~W~~  332 (344)
                      +||+|+|..++++.+.
T Consensus       101 ~fD~v~~~~~l~~l~~  116 (203)
T 1pjz_A          101 HCAAFYDRAAMIALPA  116 (203)
T ss_dssp             SEEEEEEESCGGGSCH
T ss_pred             CEEEEEECcchhhCCH
Confidence            9999999888866543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.02  E-value=6.5e-10  Score=99.71  Aligned_cols=92  Identities=21%  Similarity=0.390  Sum_probs=67.2

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--e
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--A  301 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a  301 (344)
                      .....++.+.+.++...        ..+|||||||+|.++..|+++ +.   .+.+.|+++.+++.|+++    +++  +
T Consensus        45 ~~~~~~~~l~~~~~~~~--------~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~  113 (273)
T 3bus_A           45 ATDRLTDEMIALLDVRS--------GDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRV  113 (273)
T ss_dssp             HHHHHHHHHHHHSCCCT--------TCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTE
T ss_pred             HHHHHHHHHHHhcCCCC--------CCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcce
Confidence            34455667777766533        258999999999999999874 32   455578888888777664    432  4


Q ss_pred             EEeeccccCCCCCCCcccceEecccccccC
Q 019228          302 MIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       302 ~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+...|...+||++++||+|+|..++.++.
T Consensus       114 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  143 (273)
T 3bus_A          114 TFSYADAMDLPFEDASFDAVWALESLHHMP  143 (273)
T ss_dssp             EEEECCTTSCCSCTTCEEEEEEESCTTTSS
T ss_pred             EEEECccccCCCCCCCccEEEEechhhhCC
Confidence            444446778999999999999999986663

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.00  E-value=1.1e-09  Score=93.75  Aligned_cols=88  Identities=19%  Similarity=0.261  Sum_probs=64.7

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEee
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGS  305 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~  305 (344)
                      ...+.+.+.++...         .+|||||||+|.++..|+++  ....+.+.|+++.+++.|+++    ++  .+.+-.
T Consensus        31 ~~~~~~~~~~~~~~---------~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~   99 (219)
T 3dlc_A           31 IIAENIINRFGITA---------GTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQ   99 (219)
T ss_dssp             HHHHHHHHHHCCCE---------EEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHhcCCCC---------CEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEE
Confidence            34555666655321         28999999999999999886  123556678888888887766    33  233444


Q ss_pred             ccccCCCCCCCcccceEeccccccc
Q 019228          306 FASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .|...+||++++||+|+|..++.++
T Consensus       100 ~d~~~~~~~~~~~D~v~~~~~l~~~  124 (219)
T 3dlc_A          100 GDVHNIPIEDNYADLIVSRGSVFFW  124 (219)
T ss_dssp             CBTTBCSSCTTCEEEEEEESCGGGC
T ss_pred             cCHHHCCCCcccccEEEECchHhhc
Confidence            4567899999999999999998777

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.99  E-value=1.3e-09  Score=95.59  Aligned_cols=88  Identities=17%  Similarity=0.141  Sum_probs=68.1

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCeEEeeccc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFAS  308 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda  308 (344)
                      ...++.+.+.++.          ..+|||||||+|.++..|++++.   .+.+.|+++.+++.|.++.  ..+.+...|.
T Consensus        41 ~~~~~~l~~~~~~----------~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~  107 (242)
T 3l8d_A           41 STIIPFFEQYVKK----------EAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDL  107 (242)
T ss_dssp             TTHHHHHHHHSCT----------TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBT
T ss_pred             HHHHHHHHHHcCC----------CCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcch
Confidence            4456777777652          24899999999999999999864   4456788999999998773  2334444467


Q ss_pred             cCCCCCCCcccceEecccccccC
Q 019228          309 KQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       309 ~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      ..+|+++++||+|+|..++.++.
T Consensus       108 ~~~~~~~~~fD~v~~~~~l~~~~  130 (242)
T 3l8d_A          108 SSLPFENEQFEAIMAINSLEWTE  130 (242)
T ss_dssp             TBCSSCTTCEEEEEEESCTTSSS
T ss_pred             hcCCCCCCCccEEEEcChHhhcc
Confidence            78999999999999999987764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.98  E-value=1.2e-09  Score=96.96  Aligned_cols=89  Identities=13%  Similarity=0.142  Sum_probs=65.4

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--eEE
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--AMI  303 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~  303 (344)
                      ...++.+.+.+....+        .+|||||||+|.++..|+++ +.   .+.+.|+++.+++.|+++    ++.  +.+
T Consensus        22 ~~~~~~l~~~~~~~~~--------~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~   90 (256)
T 1nkv_A           22 EEKYATLGRVLRMKPG--------TRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHF   90 (256)
T ss_dssp             HHHHHHHHHHTCCCTT--------CEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             HHHHHHHHHhcCCCCC--------CEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Confidence            5567777777765432        58999999999999988875 32   334567788887777654    442  444


Q ss_pred             eeccccCCCCCCCcccceEecccccccC
Q 019228          304 GSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      ...|...+|+ +++||+|+|..++.++.
T Consensus        91 ~~~d~~~~~~-~~~fD~V~~~~~~~~~~  117 (256)
T 1nkv_A           91 IHNDAAGYVA-NEKCDVAACVGATWIAG  117 (256)
T ss_dssp             EESCCTTCCC-SSCEEEEEEESCGGGTS
T ss_pred             EECChHhCCc-CCCCCEEEECCChHhcC
Confidence            4456778998 99999999999887664

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.97  E-value=2.4e-09  Score=94.81  Aligned_cols=73  Identities=12%  Similarity=0.166  Sum_probs=58.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC----CCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG----vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|.++-    ..+.+...|...+||++++||+|+|..++.+.
T Consensus        41 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  117 (263)
T 2yqz_A           41 PVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLV  117 (263)
T ss_dssp             CEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhhc
Confidence            5899999999999999998754   4556788999999888762    23444445677899999999999999888444

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.96  E-value=4.1e-10  Score=99.54  Aligned_cols=76  Identities=13%  Similarity=0.138  Sum_probs=58.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC---CeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv---pa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+|||||||+|.++..|++++.  ..+.+.|+++.+++.|+++..   .+.+...|...+|+++++||+|+|..++.++.
T Consensus        95 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  172 (254)
T 1xtp_A           95 SRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLT  172 (254)
T ss_dssp             SEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSC
T ss_pred             CEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCC
Confidence            5899999999999999887642  134557888889988887632   23333345678999999999999999997775


Q ss_pred             c
Q 019228          332 Q  332 (344)
Q Consensus       332 ~  332 (344)
                      .
T Consensus       173 ~  173 (254)
T 1xtp_A          173 D  173 (254)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.95  E-value=1.8e-09  Score=98.42  Aligned_cols=92  Identities=20%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             hhhHHHHHHHHh----ccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC
Q 019228          230 VEDYSHQIAEMI----GLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP  300 (344)
Q Consensus       230 ~~~yId~I~e~L----pl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp  300 (344)
                      ....++.+.+.+    .+..        ..+|||||||+|.++..|+++ +.   .+.+.|+++.+++.|+++    +++
T Consensus        63 ~~~~~~~l~~~l~~~~~~~~--------~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~  131 (297)
T 2o57_A           63 SLRTDEWLASELAMTGVLQR--------QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLA  131 (297)
T ss_dssp             HHHHHHHHHHHHHHTTCCCT--------TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHhhhccCCCC--------CCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            344566677776    3332        358999999999999999876 43   445578888888777654    332


Q ss_pred             --eEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          301 --AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       301 --a~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                        +.+...|...+||++++||+|+|..++.++..
T Consensus       132 ~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  165 (297)
T 2o57_A          132 DNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD  165 (297)
T ss_dssp             TTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSC
T ss_pred             cceEEEEcCcccCCCCCCCEeEEEecchhhhcCC
Confidence              34444467789999999999999999987754

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.94  E-value=1.8e-09  Score=96.04  Aligned_cols=74  Identities=12%  Similarity=0.141  Sum_probs=59.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||||||+|.++..|++++..  .+.+.|+++.+++.|+++.  ..+.+...|...+|+++++||+|+|..++.++
T Consensus        46 ~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  121 (253)
T 3g5l_A           46 KTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYI  121 (253)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCGGGC
T ss_pred             CEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhhhhh
Confidence            58999999999999999988642  4556788999999888773  23344444567899999999999999988666

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.94  E-value=2.6e-09  Score=95.00  Aligned_cols=75  Identities=21%  Similarity=0.372  Sum_probs=57.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||||||+|.++..|++...   .+.+.|+++.+++.|+++    +++ +.+...|.+.+||++++||+|+|..++.+
T Consensus        23 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~   99 (239)
T 1xxl_A           23 HRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHH   99 (239)
T ss_dssp             CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             CEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchhh
Confidence            5899999999999999988753   345567888887776654    433 33334467789999999999999999988


Q ss_pred             cCc
Q 019228          330 WDQ  332 (344)
Q Consensus       330 W~~  332 (344)
                      |..
T Consensus       100 ~~~  102 (239)
T 1xxl_A          100 FSD  102 (239)
T ss_dssp             CSC
T ss_pred             ccC
Confidence            753

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.93  E-value=8.4e-10  Score=100.21  Aligned_cols=92  Identities=16%  Similarity=0.258  Sum_probs=68.0

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---------CC
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LP  300 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---------vp  300 (344)
                      ...+.+.|.+.++...        ..+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++.         ..
T Consensus        42 ~~~~~~~l~~~l~~~~--------~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~  110 (293)
T 3thr_A           42 TAEYKAWLLGLLRQHG--------CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDK  110 (293)
T ss_dssp             CHHHHHHHHHHHHHTT--------CCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHT
T ss_pred             HHHHHHHHHHHhcccC--------CCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccce
Confidence            3556677777776432        25899999999999999999865   4556788888888886531         12


Q ss_pred             eEEeeccccCCC---CCCCcccceEec-ccccccCc
Q 019228          301 AMIGSFASKQLP---YPSLSFDMLHCA-RCGVDWDQ  332 (344)
Q Consensus       301 a~~~~lda~rLP---FpD~SFDlVhcs-~~Li~W~~  332 (344)
                      +.+...+...+|   |++++||+|+|. .++.++..
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~  146 (293)
T 3thr_A          111 WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPD  146 (293)
T ss_dssp             CEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCC
T ss_pred             eeEeecChhhCccccccCCCeEEEEEcChHHhhcCc
Confidence            234444567788   999999999998 78866655

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.92  E-value=1e-09  Score=95.52  Aligned_cols=91  Identities=14%  Similarity=0.205  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc------------C
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------G  298 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR------------G  298 (344)
                      ...++.|.+.+....        ..+|||||||+|.++..|+++... ..+.+.|+++.+++.|+++            .
T Consensus        15 ~~~~~~l~~~l~~~~--------~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~   85 (219)
T 3jwg_A           15 QQRLGTVVAVLKSVN--------AKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLKIDRLPEMQRKR   85 (219)
T ss_dssp             HHHHHHHHHHHHHTT--------CCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHTGGGSCHHHHTT
T ss_pred             HHHHHHHHHHHhhcC--------CCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHHhhccccccCcc
Confidence            334556666665322        358999999999999999986421 2445678888888888775            3


Q ss_pred             CCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          299 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       299 vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      +.+..+  |...+|+++++||+|+|..++.++..
T Consensus        86 v~~~~~--d~~~~~~~~~~fD~V~~~~~l~~~~~  117 (219)
T 3jwg_A           86 ISLFQS--SLVYRDKRFSGYDAATVIEVIEHLDE  117 (219)
T ss_dssp             EEEEEC--CSSSCCGGGTTCSEEEEESCGGGCCH
T ss_pred             eEEEeC--cccccccccCCCCEEEEHHHHHhCCH
Confidence            334444  45688999999999999999977643

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.92  E-value=2.4e-09  Score=92.76  Aligned_cols=77  Identities=16%  Similarity=0.169  Sum_probs=59.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC---CeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv---pa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+|||||||+|.++..|++++   ..+.+.|+++.+++.|+++..   .+.+...|...++ ++++||+|+|..++.+..
T Consensus        53 ~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~  128 (216)
T 3ofk_A           53 SNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVLYYLE  128 (216)
T ss_dssp             EEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCGGGSS
T ss_pred             CcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHHHhCC
Confidence            589999999999999999874   256678899999998887631   2334444567788 789999999999887666


Q ss_pred             cccc
Q 019228          332 QKGK  335 (344)
Q Consensus       332 ~~~g  335 (344)
                      ..+.
T Consensus       129 ~~~~  132 (216)
T 3ofk_A          129 DMTQ  132 (216)
T ss_dssp             SHHH
T ss_pred             CHHH
Confidence            5443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.91  E-value=1.9e-09  Score=93.40  Aligned_cols=73  Identities=16%  Similarity=0.216  Sum_probs=59.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc---CCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR---Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++   .+.+..+  |...+|++ ++||+|+|..++.++.
T Consensus        47 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~--d~~~~~~~-~~fD~v~~~~~l~~~~  120 (220)
T 3hnr_A           47 GNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEG--DFLSFEVP-TSIDTIVSTYAFHHLT  120 (220)
T ss_dssp             SEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESC--CSSSCCCC-SCCSEEEEESCGGGSC
T ss_pred             CeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeC--ChhhcCCC-CCeEEEEECcchhcCC
Confidence            5899999999999999998864   455678999999998887   3444444  56789999 9999999999886665


Q ss_pred             cc
Q 019228          332 QK  333 (344)
Q Consensus       332 ~~  333 (344)
                      ..
T Consensus       121 ~~  122 (220)
T 3hnr_A          121 DD  122 (220)
T ss_dssp             HH
T ss_pred             hH
Confidence            44

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.91  E-value=2.5e-09  Score=96.30  Aligned_cols=75  Identities=19%  Similarity=0.373  Sum_probs=60.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCcc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++.... +...|...+|+++++||+|+|..++.+|..+
T Consensus        56 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~  130 (260)
T 2avn_A           56 CRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVEN  130 (260)
T ss_dssp             CEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred             CeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence            5899999999999999998864   4556789999999998875432 3334567899999999999999888888543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.91  E-value=1.2e-09  Score=95.30  Aligned_cols=92  Identities=17%  Similarity=0.213  Sum_probs=64.5

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC------Ce
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL------PA  301 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv------pa  301 (344)
                      ..++.+.+.+....        ..+|||||||+|.++..|+++.-. ..+.+.|+++.+++.|+++    ++      .+
T Consensus        16 ~~~~~l~~~l~~~~--------~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v   86 (217)
T 3jwh_A           16 QRMNGVVAALKQSN--------ARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERL   86 (217)
T ss_dssp             HHHHHHHHHHHHTT--------CCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTE
T ss_pred             HHHHHHHHHHHhcC--------CCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcce
Confidence            34566666665332        358999999999999999986421 1445578888888888765    11      23


Q ss_pred             EEeeccccCCCCCCCcccceEecccccccCc
Q 019228          302 MIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       302 ~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .+-..|...+++++++||+|+|..++.++..
T Consensus        87 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  117 (217)
T 3jwh_A           87 QLIQGALTYQDKRFHGYDAATVIEVIEHLDL  117 (217)
T ss_dssp             EEEECCTTSCCGGGCSCSEEEEESCGGGCCH
T ss_pred             EEEeCCcccccccCCCcCEEeeHHHHHcCCH
Confidence            3333345678888899999999999866643

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.90  E-value=2.9e-09  Score=95.42  Aligned_cols=72  Identities=18%  Similarity=0.258  Sum_probs=56.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecc-ccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCAR-CGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~-~Li~W  330 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++...+.+...|...+|+ +++||+|+|.. ++.+.
T Consensus        52 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~  124 (263)
T 3pfg_A           52 ASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHL  124 (263)
T ss_dssp             CEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGS
T ss_pred             CcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhc
Confidence            5899999999999999998864   3456788999999998873333333335677888 89999999997 77554

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.89  E-value=4.4e-10  Score=108.25  Aligned_cols=92  Identities=11%  Similarity=0.076  Sum_probs=71.7

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEe---e
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG---S  305 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~---~  305 (344)
                      ....+.+.+.+.+....        ..+|||||||+|.++..|++++.   .+.+.|+++.+++.|++++++....   .
T Consensus        91 ~~~~~~~~l~~~~~~~~--------~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~  159 (416)
T 4e2x_A           91 HFAMLARDFLATELTGP--------DPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEK  159 (416)
T ss_dssp             HHHHHHHHHHHTTTCSS--------SCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSH
T ss_pred             HHHHHHHHHHHHhCCCC--------CCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeech
Confidence            44556666766665432        25899999999999999999865   4566899999999999998765432   2


Q ss_pred             ccccCCCCCCCcccceEecccccccC
Q 019228          306 FASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+++.+||++++||+|+|..++.|+.
T Consensus       160 ~~~~~l~~~~~~fD~I~~~~vl~h~~  185 (416)
T 4e2x_A          160 ATADDVRRTEGPANVIYAANTLCHIP  185 (416)
T ss_dssp             HHHHHHHHHHCCEEEEEEESCGGGCT
T ss_pred             hhHhhcccCCCCEEEEEECChHHhcC
Confidence            34567899999999999999997774

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.89  E-value=2.7e-09  Score=96.00  Aligned_cols=74  Identities=18%  Similarity=0.208  Sum_probs=57.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+|||||||+|.++..|+++..  ..+.+.|+++.+++.|+++    +++  +.+-..|...+||++++||+|+|..++.
T Consensus        48 ~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~  125 (267)
T 3kkz_A           48 SLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIY  125 (267)
T ss_dssp             CEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGG
T ss_pred             CEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCce
Confidence            5899999999999999998722  1445567888888777654    443  4444456788999999999999999887


Q ss_pred             cc
Q 019228          329 DW  330 (344)
Q Consensus       329 ~W  330 (344)
                      ++
T Consensus       126 ~~  127 (267)
T 3kkz_A          126 NI  127 (267)
T ss_dssp             GT
T ss_pred             ec
Confidence            66

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.88  E-value=6.6e-09  Score=90.93  Aligned_cols=87  Identities=17%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             HHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC--CeEEeeccccCCC
Q 019228          235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLP  312 (344)
Q Consensus       235 d~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv--pa~~~~lda~rLP  312 (344)
                      +.|.+.++...        ..+|||||||+|.++..|++++..  .+.+.|+++.+++.|+++..  .+.+...|...+|
T Consensus        33 ~~l~~~~~~~~--------~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~  102 (243)
T 3bkw_A           33 PALRAMLPEVG--------GLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDKLH  102 (243)
T ss_dssp             HHHHHHSCCCT--------TCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCC
T ss_pred             HHHHHhccccC--------CCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhcc
Confidence            45666666322        258999999999999999988541  44567889999999987742  2333334567789


Q ss_pred             CCCCcccceEecccccccC
Q 019228          313 YPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       313 FpD~SFDlVhcs~~Li~W~  331 (344)
                      +++++||+|+|..++.++.
T Consensus       103 ~~~~~fD~v~~~~~l~~~~  121 (243)
T 3bkw_A          103 LPQDSFDLAYSSLALHYVE  121 (243)
T ss_dssp             CCTTCEEEEEEESCGGGCS
T ss_pred             CCCCCceEEEEeccccccc
Confidence            9999999999999886663

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.87  E-value=4.2e-09  Score=93.40  Aligned_cols=74  Identities=18%  Similarity=0.171  Sum_probs=56.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+|||||||+|.++..|+++...  .+.+.|+++.+++.|+++    +++  +.+...|...+||++++||+|+|..++.
T Consensus        48 ~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  125 (257)
T 3f4k_A           48 AKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIY  125 (257)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSC
T ss_pred             CeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHh
Confidence            58999999999999999886321  445577888888776654    443  4444446789999999999999999987


Q ss_pred             cc
Q 019228          329 DW  330 (344)
Q Consensus       329 ~W  330 (344)
                      ++
T Consensus       126 ~~  127 (257)
T 3f4k_A          126 NI  127 (257)
T ss_dssp             CC
T ss_pred             hc
Confidence            66

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.87  E-value=2.7e-09  Score=92.48  Aligned_cols=77  Identities=19%  Similarity=0.222  Sum_probs=57.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||+|||+|.++..|++.......+.+.|.++.+++.|+++    +++ +.+...|...+|+++++||+|+|..++.+
T Consensus        39 ~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  118 (219)
T 3dh0_A           39 MTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHE  118 (219)
T ss_dssp             CEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESCGGG
T ss_pred             CEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehhhhh
Confidence            5899999999999999887530011445567888888777665    333 44444467789999999999999999977


Q ss_pred             cC
Q 019228          330 WD  331 (344)
Q Consensus       330 W~  331 (344)
                      +.
T Consensus       119 ~~  120 (219)
T 3dh0_A          119 LS  120 (219)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.87  E-value=4.1e-09  Score=90.54  Aligned_cols=74  Identities=15%  Similarity=0.168  Sum_probs=58.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC-CeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv-pa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|++.+. .+.+...|...+ +++++||+|+|..++.++..
T Consensus        48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~  122 (218)
T 3ou2_A           48 GDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPD  122 (218)
T ss_dssp             SEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCH
T ss_pred             CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCH
Confidence            4899999999999999988754   44567889999999988763 344444456677 89999999999998866654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.87  E-value=6.1e-09  Score=90.57  Aligned_cols=74  Identities=16%  Similarity=0.053  Sum_probs=56.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC-CeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv-pa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++.. .+.+...|...+ +++++||+|+|..++.++..
T Consensus        44 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~~  118 (250)
T 2p7i_A           44 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHIDD  118 (250)
T ss_dssp             SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCSS
T ss_pred             CcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhcC
Confidence            4799999999999999998754   34557888999999888732 233333345566 68899999999999977643

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.86  E-value=1.7e-09  Score=95.94  Aligned_cols=72  Identities=17%  Similarity=0.276  Sum_probs=57.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCC--CCCCCcccceEecccccccCc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL--PYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rL--PFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .+|||||||+|.++..|++++..   +.+.|+++.+++.|.++ +.+..++  ...+  ||++++||+|+|..++.++..
T Consensus        43 ~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~-~~~~~~d--~~~~~~~~~~~~fD~i~~~~~l~~~~~  116 (240)
T 3dli_A           43 RRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCEGK-FNVVKSD--AIEYLKSLPDKYLDGVMISHFVEHLDP  116 (240)
T ss_dssp             SCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHHTT-SEEECSC--HHHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred             CeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHHhh-cceeecc--HHHHhhhcCCCCeeEEEECCchhhCCc
Confidence            57999999999999999887543   35578999999999877 5444443  4444  999999999999998866653

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.86  E-value=3.6e-09  Score=91.71  Aligned_cols=75  Identities=17%  Similarity=0.265  Sum_probs=56.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||+|||+|.++..|++++.   .+.+.|+++.+++.|+++    +..+.+...|...+|+++++||+|+|..++..+
T Consensus        40 ~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~  116 (227)
T 1ve3_A           40 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF  116 (227)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhC
Confidence            5899999999999999988854   455678888888777664    222333334566789999999999999885444


Q ss_pred             Cc
Q 019228          331 DQ  332 (344)
Q Consensus       331 ~~  332 (344)
                      +.
T Consensus       117 ~~  118 (227)
T 1ve3_A          117 EP  118 (227)
T ss_dssp             CH
T ss_pred             CH
Confidence            43

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.86  E-value=7.2e-09  Score=87.79  Aligned_cols=74  Identities=14%  Similarity=0.219  Sum_probs=55.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC-CeEEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv-pa~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||+|||+|.++..|++++.   .+.+.|.++.+++.|+++    ++ .+.+...|...+|+ +++||+|+|..++.+
T Consensus        34 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~  109 (199)
T 2xvm_A           34 GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLMF  109 (199)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGGG
T ss_pred             CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhhh
Confidence            5899999999999999998854   445567777777776653    33 33444445677888 899999999998866


Q ss_pred             cCc
Q 019228          330 WDQ  332 (344)
Q Consensus       330 W~~  332 (344)
                      +..
T Consensus       110 ~~~  112 (199)
T 2xvm_A          110 LEA  112 (199)
T ss_dssp             SCG
T ss_pred             CCH
Confidence            653

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.85  E-value=5.2e-09  Score=97.01  Aligned_cols=73  Identities=14%  Similarity=0.140  Sum_probs=56.9

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..|+++ +.   .+.+.|+++.+++.|+++    ++.  +.+...|...+||++++||+|+|..++
T Consensus       119 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  195 (312)
T 3vc1_A          119 DTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNEST  195 (312)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCG
T ss_pred             CEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCch
Confidence            58999999999999999886 43   345567888888777664    443  444444677899999999999999988


Q ss_pred             ccc
Q 019228          328 VDW  330 (344)
Q Consensus       328 i~W  330 (344)
                      .++
T Consensus       196 ~~~  198 (312)
T 3vc1_A          196 MYV  198 (312)
T ss_dssp             GGS
T ss_pred             hhC
Confidence            666

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.85  E-value=7.6e-09  Score=95.13  Aligned_cols=74  Identities=12%  Similarity=0.021  Sum_probs=58.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC----------------------CCeEEeeccccCCC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------------------LPAMIGSFASKQLP  312 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG----------------------vpa~~~~lda~rLP  312 (344)
                      .+|||+|||+|.++.+|++++.   .+.+.|+++.+++.|+++.                      ..+.+-..|...+|
T Consensus        70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~  146 (252)
T 2gb4_A           70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP  146 (252)
T ss_dssp             CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred             CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence            5899999999999999999875   4566899999999886542                      23344445677899


Q ss_pred             CCC-CcccceEecccccccC
Q 019228          313 YPS-LSFDMLHCARCGVDWD  331 (344)
Q Consensus       313 FpD-~SFDlVhcs~~Li~W~  331 (344)
                      +++ ++||+|++..++.+..
T Consensus       147 ~~~~~~FD~V~~~~~l~~l~  166 (252)
T 2gb4_A          147 RANIGKFDRIWDRGALVAIN  166 (252)
T ss_dssp             GGCCCCEEEEEESSSTTTSC
T ss_pred             cccCCCEEEEEEhhhhhhCC
Confidence            986 8999999988875554

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.84  E-value=3.1e-09  Score=88.78  Aligned_cols=71  Identities=21%  Similarity=0.175  Sum_probs=57.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+|||+|||+|.++..|+++..   .+.+.|.++.+++.|+++...+.+...|   +|+++++||+|+|..++.++.
T Consensus        19 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~   89 (170)
T 3i9f_A           19 GVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMD   89 (170)
T ss_dssp             EEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCS
T ss_pred             CeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhccc
Confidence            5899999999999999998752   5667899999999998873333343333   899999999999999987764

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.84  E-value=2.7e-09  Score=92.35  Aligned_cols=71  Identities=20%  Similarity=0.299  Sum_probs=59.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc-CCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++ ++.+..++  ...+| ++++||+|+|..++.++.
T Consensus        45 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d--~~~~~-~~~~fD~v~~~~~l~~~~  116 (211)
T 3e23_A           45 AKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTML--FHQLD-AIDAYDAVWAHACLLHVP  116 (211)
T ss_dssp             CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECC--GGGCC-CCSCEEEEEECSCGGGSC
T ss_pred             CcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEee--eccCC-CCCcEEEEEecCchhhcC
Confidence            5899999999999999998864   445678899999988887 66666665  45788 899999999999997775

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.84  E-value=5e-09  Score=96.77  Aligned_cols=75  Identities=11%  Similarity=0.079  Sum_probs=54.1

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||||.++..|+++ ......+.+.|++++|++.|+++    +.  ++.+...|...+|++  .||+|+|..++
T Consensus        72 ~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~~l  149 (261)
T 4gek_A           72 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTL  149 (261)
T ss_dssp             CEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEESCG
T ss_pred             CEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeeeee
Confidence            48999999999999998875 11223456678999999988875    32  333434456788875  59999999888


Q ss_pred             cccC
Q 019228          328 VDWD  331 (344)
Q Consensus       328 i~W~  331 (344)
                      ++..
T Consensus       150 ~~~~  153 (261)
T 4gek_A          150 QFLE  153 (261)
T ss_dssp             GGSC
T ss_pred             eecC
Confidence            4443

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.83  E-value=9.3e-09  Score=94.40  Aligned_cols=88  Identities=16%  Similarity=0.216  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhh---CCceEEEcccccccHHHHHHHHHc-------CCC
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS---KELLTMCIANYEASGSQVQLTLER-------GLP  300 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Lae---r~V~~~sIa~~D~sea~Iq~A~eR-------Gvp  300 (344)
                      ...++.|.++...         ...+|||||||+|.++..|++   .+.   .+.+.|+++.+++.|+++       ...
T Consensus        23 ~~~~~~l~~~~~~---------~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~   90 (299)
T 3g5t_A           23 SDFYKMIDEYHDG---------ERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKN   90 (299)
T ss_dssp             HHHHHHHHHHCCS---------CCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTT
T ss_pred             HHHHHHHHHHhcC---------CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCc
Confidence            3455666666442         235899999999999999984   333   445578888888888765       223


Q ss_pred             eEEeeccccCCCCCC------CcccceEeccccccc
Q 019228          301 AMIGSFASKQLPYPS------LSFDMLHCARCGVDW  330 (344)
Q Consensus       301 a~~~~lda~rLPFpD------~SFDlVhcs~~Li~W  330 (344)
                      +.+...|.+.+|+++      ++||+|+|..++++.
T Consensus        91 v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~  126 (299)
T 3g5t_A           91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF  126 (299)
T ss_dssp             EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS
T ss_pred             eEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh
Confidence            444455678899998      999999999988544

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.83  E-value=4.3e-09  Score=93.22  Aligned_cols=72  Identities=17%  Similarity=0.153  Sum_probs=54.7

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||||||+|.++..|+++  +.   .+.+.|+++.+++.|.++...+.+...|...+| ++++||+|+|..++.+.
T Consensus        35 ~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~  108 (259)
T 2p35_A           35 LNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYANAVFQWV  108 (259)
T ss_dssp             SSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEESCGGGS
T ss_pred             CEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEeCchhhC
Confidence            57999999999999988876  33   234468888999988877433333344567888 89999999999888444

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.83  E-value=6.9e-09  Score=90.51  Aligned_cols=91  Identities=20%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeec
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSF  306 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~l  306 (344)
                      ..+.+.+.+++....      ....+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++    ++.+.+...
T Consensus        21 ~~~~~~~~~~l~~~~------~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~   91 (246)
T 1y8c_A           21 KKWSDFIIEKCVENN------LVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQ   91 (246)
T ss_dssp             HHHHHHHHHHHHTTT------CCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECC
T ss_pred             HHHHHHHHHHHHHhC------CCCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEec
Confidence            445666777665321      1235899999999999999998764   355578888888887765    223333334


Q ss_pred             cccCCCCCCCcccceEecc-cccccC
Q 019228          307 ASKQLPYPSLSFDMLHCAR-CGVDWD  331 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~-~Li~W~  331 (344)
                      |...+|++ ++||+|+|.. ++.++.
T Consensus        92 d~~~~~~~-~~fD~v~~~~~~l~~~~  116 (246)
T 1y8c_A           92 DISNLNIN-RKFDLITCCLDSTNYII  116 (246)
T ss_dssp             CGGGCCCS-CCEEEEEECTTGGGGCC
T ss_pred             ccccCCcc-CCceEEEEcCccccccC
Confidence            56678888 8999999998 886663

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.83  E-value=4.1e-09  Score=93.57  Aligned_cols=86  Identities=13%  Similarity=0.059  Sum_probs=61.6

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC----CCeEEee
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGS  305 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG----vpa~~~~  305 (344)
                      ...++..+.+.++. .        ..+|||||||+|.++..|++.+..  .+.+.|+++.+++.|+++.    ..+.+..
T Consensus        46 ~~~~~~~l~~~~~~-~--------~~~vLDiGcGtG~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~  114 (236)
T 1zx0_A           46 ETPYMHALAAAASS-K--------GGRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLK  114 (236)
T ss_dssp             GHHHHHHHHHHHTT-T--------CEEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEE
T ss_pred             HHHHHHHHHhhcCC-C--------CCeEEEEeccCCHHHHHHHhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEe
Confidence            34556666666542 1        247999999999999999876532  5567899999998888753    2333334


Q ss_pred             ccccCC--CCCCCcccceEe-ccc
Q 019228          306 FASKQL--PYPSLSFDMLHC-ARC  326 (344)
Q Consensus       306 lda~rL--PFpD~SFDlVhc-s~~  326 (344)
                      .|.+.+  ||++++||+|+| ...
T Consensus       115 ~d~~~~~~~~~~~~fD~V~~d~~~  138 (236)
T 1zx0_A          115 GLWEDVAPTLPDGHFDGILYDTYP  138 (236)
T ss_dssp             SCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             cCHHHhhcccCCCceEEEEECCcc
Confidence            456677  999999999999 443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.82  E-value=7e-09  Score=88.98  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=53.4

Q ss_pred             CeEEEECCccchhh-HHHhhCCceEEEcccccccHHHHHHHHHc----C--CCeEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFG-AHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfa-a~Laer~V~~~sIa~~D~sea~Iq~A~eR----G--vpa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||+|||+|.++ ..++..+.   .+.+.|.++.+++.|+++    +  +.+..+  |...+|+++++||+|+|..++
T Consensus        25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~--d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKG--DIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEEC--CTTSCCSCTTCEEEEEECSCG
T ss_pred             CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEEC--chhhCCCCCCceeEEEEcChH
Confidence            58999999999884 45555553   345567888887777654    3  444444  567899999999999999888


Q ss_pred             cccC
Q 019228          328 VDWD  331 (344)
Q Consensus       328 i~W~  331 (344)
                      .++.
T Consensus       100 ~~~~  103 (209)
T 2p8j_A          100 FHMR  103 (209)
T ss_dssp             GGSC
T ss_pred             HhCC
Confidence            7774

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.82  E-value=5.4e-09  Score=90.06  Aligned_cols=75  Identities=21%  Similarity=0.351  Sum_probs=59.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|.++...+..+++....+|+++++||+|+|..++.++..
T Consensus        34 ~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~  108 (230)
T 3cc8_A           34 KEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFD  108 (230)
T ss_dssp             SEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSSC
T ss_pred             CcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcCC
Confidence            5899999999999999998853   55667899999999887765555565433348999999999999998877643

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.82  E-value=6.5e-09  Score=94.30  Aligned_cols=70  Identities=13%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||||||+|.++..|++.+.   .+.+.|+++.+++.|.++  .+.+..+  |...+|+ +++||+|+|..++.+.
T Consensus        59 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~--d~~~~~~-~~~fD~v~~~~~l~~~  130 (279)
T 3ccf_A           59 EFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVA--DARNFRV-DKPLDAVFSNAMLHWV  130 (279)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEEC--CTTTCCC-SSCEEEEEEESCGGGC
T ss_pred             CEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEEC--ChhhCCc-CCCcCEEEEcchhhhC
Confidence            5899999999999999998654   445678899999988877  3555555  4667998 6899999999888443

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.81  E-value=6.4e-09  Score=89.81  Aligned_cols=72  Identities=21%  Similarity=0.227  Sum_probs=54.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+|||||||+|.++..|   +.  ..+.+.|+++.+++.|+++...+.+...|...+|+++++||+|+|..++.+..
T Consensus        38 ~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~  109 (211)
T 2gs9_A           38 ESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE  109 (211)
T ss_dssp             SEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred             CeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence            58999999999999888   22  03455788899999888873222333335678999999999999999886654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.80  E-value=9.8e-09  Score=89.98  Aligned_cols=74  Identities=20%  Similarity=0.236  Sum_probs=57.8

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHcCC---CeEEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eRGv---pa~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||||||+|.++..|+++  +.   .+.+.|+++.+++.|+++-.   .+.+...|...+|++ ++||+|+|..++.+
T Consensus        46 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~  121 (234)
T 3dtn_A           46 PDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSIHH  121 (234)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCGGG
T ss_pred             CeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCcccc
Confidence            68999999999999999886  33   44567888999988887621   333444467789988 99999999998877


Q ss_pred             cCc
Q 019228          330 WDQ  332 (344)
Q Consensus       330 W~~  332 (344)
                      +..
T Consensus       122 ~~~  124 (234)
T 3dtn_A          122 LED  124 (234)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            743

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.80  E-value=6.8e-09  Score=89.93  Aligned_cols=77  Identities=25%  Similarity=0.349  Sum_probs=60.4

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC------CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL------PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv------pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++    ++      .+.+...+...+|+++++||+|+|.
T Consensus        32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  108 (235)
T 3sm3_A           32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ  108 (235)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence            5899999999999999998854   455678889998888774    22      1334444677899999999999999


Q ss_pred             ccccccCccc
Q 019228          325 RCGVDWDQKG  334 (344)
Q Consensus       325 ~~Li~W~~~~  334 (344)
                      .++.++....
T Consensus       109 ~~l~~~~~~~  118 (235)
T 3sm3_A          109 AFLTSVPDPK  118 (235)
T ss_dssp             SCGGGCCCHH
T ss_pred             chhhcCCCHH
Confidence            9987775443

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.80  E-value=9.7e-09  Score=88.09  Aligned_cols=71  Identities=11%  Similarity=0.030  Sum_probs=55.3

Q ss_pred             eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      +|||||||+|.++..|++.+.   .+.+.|.++.+++.|+++    ++.+.+...|...+|+++++||+|+|.  +.+++
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~  106 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLP  106 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCC
T ss_pred             CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCC
Confidence            899999999999999998864   455678888888887765    444444445677899999999999996  44553

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.79  E-value=9.1e-09  Score=87.96  Aligned_cols=72  Identities=21%  Similarity=0.255  Sum_probs=54.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC---CeEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv---pa~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+|||+|||+|.++..|++.+..  .+.+.|+++.+++.|+++..   .+.+...|...+|+++++||+|+|..++.
T Consensus        44 ~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~  118 (215)
T 2pxx_A           44 DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD  118 (215)
T ss_dssp             CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred             CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence            47999999999999999887542  44557888888888877631   22333345678899999999999977663

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.79  E-value=4.5e-09  Score=93.19  Aligned_cols=77  Identities=10%  Similarity=0.002  Sum_probs=58.5

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC-----CeEEeeccccCCCCCCCcccceEeccccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-----PAMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv-----pa~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      ..+|||||||+|.++..|+++..  ..+.+.|+++.+++.|+++..     .+.+...|...+|+++++||+|+|..++.
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            35899999999999999888742  245567888888888877631     12333445778999999999999999886


Q ss_pred             ccCc
Q 019228          329 DWDQ  332 (344)
Q Consensus       329 ~W~~  332 (344)
                      ++..
T Consensus       158 ~~~~  161 (241)
T 2ex4_A          158 HLTD  161 (241)
T ss_dssp             GSCH
T ss_pred             hCCH
Confidence            6654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.77  E-value=1.4e-08  Score=92.26  Aligned_cols=74  Identities=12%  Similarity=0.098  Sum_probs=57.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCC-CCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLP-YPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLP-FpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|.++    +++  +.+-..|...+| |++++||+|+|..++
T Consensus        70 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  146 (285)
T 4htf_A           70 LRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL  146 (285)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred             CEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence            5899999999999999998854   445578888888887765    332  333334566787 899999999999988


Q ss_pred             cccC
Q 019228          328 VDWD  331 (344)
Q Consensus       328 i~W~  331 (344)
                      .++.
T Consensus       147 ~~~~  150 (285)
T 4htf_A          147 EWVA  150 (285)
T ss_dssp             GGCS
T ss_pred             hccc
Confidence            6664

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.77  E-value=7.4e-09  Score=95.07  Aligned_cols=90  Identities=11%  Similarity=0.091  Sum_probs=63.1

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----C----CCeE
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G----LPAM  302 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----G----vpa~  302 (344)
                      ...+..+.+.++..         ..+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++    +    ..+.
T Consensus        69 ~~~~~~~~~~~~~~---------~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~  136 (299)
T 3g2m_A           69 TSEAREFATRTGPV---------SGPVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCT  136 (299)
T ss_dssp             HHHHHHHHHHHCCC---------CSCEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEE
T ss_pred             cHHHHHHHHhhCCC---------CCcEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceE
Confidence            34455666666532         13799999999999999998854   345578888888887765    1    1233


Q ss_pred             EeeccccCCCCCCCcccceEecccccccCcc
Q 019228          303 IGSFASKQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       303 ~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      +...|...+|+ +++||+|+|+..+++|...
T Consensus       137 ~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~  166 (299)
T 3g2m_A          137 LVQGDMSAFAL-DKRFGTVVISSGSINELDE  166 (299)
T ss_dssp             EEECBTTBCCC-SCCEEEEEECHHHHTTSCH
T ss_pred             EEeCchhcCCc-CCCcCEEEECCcccccCCH
Confidence            33345667888 7899999987666677654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.77  E-value=2.3e-09  Score=96.25  Aligned_cols=90  Identities=19%  Similarity=0.221  Sum_probs=57.6

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-C--ceEEEcccccccHH------HHHHHHHc----C
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-E--LLTMCIANYEASGS------QVQLTLER----G  298 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~--V~~~sIa~~D~sea------~Iq~A~eR----G  298 (344)
                      ..+..+.+.+.+..+        .+|||||||+|.++..|+++ +  ..   +.+.|+++.      +++.|+++    +
T Consensus        30 ~~~~~l~~~~~~~~~--------~~vLDiGcG~G~~~~~l~~~~g~~~~---v~gvD~s~~~~~~~~~~~~a~~~~~~~~   98 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPG--------EKILEIGCGQGDLSAVLADQVGSSGH---VTGIDIASPDYGAPLTLGQAWNHLLAGP   98 (275)
T ss_dssp             HHHHHHHHHHTCCTT--------CEEEEESCTTSHHHHHHHHHHCTTCE---EEEECSSCTTCCSSSCHHHHHHHHHTST
T ss_pred             HHHHHHHHHcCCCCC--------CEEEEeCCCCCHHHHHHHHHhCCCCE---EEEEECCccccccHHHHHHHHHHHHhcC
Confidence            334556666654332        58999999999999998875 2  22   222344333      44444433    3


Q ss_pred             C--CeEEeecc---ccCCCCCCCcccceEecccccccCc
Q 019228          299 L--PAMIGSFA---SKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       299 v--pa~~~~ld---a~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      +  .+.+...|   ...+||++++||+|+|..++.++..
T Consensus        99 ~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~  137 (275)
T 3bkx_A           99 LGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFAS  137 (275)
T ss_dssp             TGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSC
T ss_pred             CCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCC
Confidence            3  23333333   6788999999999999999977654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.77  E-value=1.6e-08  Score=84.70  Aligned_cols=72  Identities=18%  Similarity=0.114  Sum_probs=55.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEec-ccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCA-RCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs-~~Li~  329 (344)
                      .+|||||||+|.++..|++.+.   .+.+.|.++.+++.|.++...+.+...|...+|+++++||+|+|. .++.+
T Consensus        48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~  120 (195)
T 3cgg_A           48 AKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGF  120 (195)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred             CeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhh
Confidence            5899999999999999998854   455678889999888877433333334566789999999999998 45533

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.76  E-value=2.3e-08  Score=89.88  Aligned_cols=69  Identities=22%  Similarity=0.361  Sum_probs=55.3

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      .+|||||||+|.++..+++.  +.   .+.+.|+++.+++.|.++...+.+...|...+||++++||+|+|..+
T Consensus        87 ~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  157 (269)
T 1p91_A           87 TAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA  157 (269)
T ss_dssp             CEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred             CEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCC
Confidence            58999999999999999886  43   34557899999999988864444444567789999999999998754

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.76  E-value=1.7e-08  Score=88.41  Aligned_cols=67  Identities=25%  Similarity=0.325  Sum_probs=55.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||||||+|.++..|+++       .+.|.++.+++.|.++++.+..++  ...+|+++++||+|+|..++.+.
T Consensus        49 ~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~~~~~d--~~~~~~~~~~fD~v~~~~~l~~~  115 (219)
T 1vlm_A           49 GRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGT--AENLPLKDESFDFALMVTTICFV  115 (219)
T ss_dssp             SCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECB--TTBCCSCTTCEEEEEEESCGGGS
T ss_pred             CcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCEEEEcc--cccCCCCCCCeeEEEEcchHhhc
Confidence            47999999999999998877       335888889999988876665554  56789999999999999988655

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.76  E-value=7.6e-09  Score=96.78  Aligned_cols=90  Identities=9%  Similarity=-0.015  Sum_probs=63.9

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCC-eEEeeccccC
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-AMIGSFASKQ  310 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvp-a~~~~lda~r  310 (344)
                      .+++.+.+.++...+        .+|||||||+|.++..|++++.   .+.+.|.++.|++.|+++-.. ....+  ...
T Consensus        32 ~~~~~il~~l~l~~g--------~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~--~~~   98 (261)
T 3iv6_A           32 SDRENDIFLENIVPG--------STVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTID--LLD   98 (261)
T ss_dssp             CHHHHHHHTTTCCTT--------CEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEE--ECC
T ss_pred             HHHHHHHHhcCCCCc--------CEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceee--eee
Confidence            456667776665432        5899999999999999999864   455678999999999876321 12222  233


Q ss_pred             CCC-----CCCcccceEecccccccCccc
Q 019228          311 LPY-----PSLSFDMLHCARCGVDWDQKG  334 (344)
Q Consensus       311 LPF-----pD~SFDlVhcs~~Li~W~~~~  334 (344)
                      +++     .+++||+|+|..++.+|...+
T Consensus        99 ~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~  127 (261)
T 3iv6_A           99 ITAEIPKELAGHFDFVLNDRLINRFTTEE  127 (261)
T ss_dssp             TTSCCCGGGTTCCSEEEEESCGGGSCHHH
T ss_pred             cccccccccCCCccEEEEhhhhHhCCHHH
Confidence            333     368999999999887776544

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.75  E-value=1.3e-08  Score=88.81  Aligned_cols=73  Identities=18%  Similarity=0.187  Sum_probs=53.4

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++...+.+...|...+|+ +++||+|+|....+++.
T Consensus        42 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~  114 (239)
T 3bxo_A           42 SSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYL  114 (239)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGC
T ss_pred             CeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhc
Confidence            5899999999999999988743   4455788899999888774223333335667887 78999999765333443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.74  E-value=2.7e-08  Score=87.95  Aligned_cols=66  Identities=20%  Similarity=0.264  Sum_probs=53.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCeEEeeccccCCCCC-CCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYP-SLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda~rLPFp-D~SFDlVhcs  324 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++.  +.+..+++ ...+||+ +++||+|+|.
T Consensus        50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~~~fD~v~~~  118 (226)
T 3m33_A           50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNG-KGELPAGLGAPFGLIVSR  118 (226)
T ss_dssp             CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCS-CSSCCTTCCCCEEEEEEE
T ss_pred             CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcch-hhccCCcCCCCEEEEEeC
Confidence            5899999999999999998854   4556789999999998874  33444543 1579999 9999999997

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.73  E-value=1.5e-08  Score=91.14  Aligned_cols=75  Identities=20%  Similarity=0.292  Sum_probs=57.4

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..|+++  +.   .+.+.|+++.+++.|+++    +++ +.+...|...+|+++++||+|+|..++
T Consensus        39 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  115 (276)
T 3mgg_A           39 AKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL  115 (276)
T ss_dssp             CEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred             CeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence            58999999999999999876  33   345567888888777664    443 444445677899999999999999988


Q ss_pred             cccCc
Q 019228          328 VDWDQ  332 (344)
Q Consensus       328 i~W~~  332 (344)
                      .++..
T Consensus       116 ~~~~~  120 (276)
T 3mgg_A          116 EHLQS  120 (276)
T ss_dssp             GGCSC
T ss_pred             hhcCC
Confidence            76653

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.73  E-value=1.8e-08  Score=88.12  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=60.2

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeec
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSF  306 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~l  306 (344)
                      ..+.+.+.+.++.          ..+|||||||+|.++..|+++ .   .+.+.|+++.+++.|+++    +..+.+...
T Consensus        21 ~~~~~~~~~~~~~----------~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~   86 (243)
T 3d2l_A           21 PEWVAWVLEQVEP----------GKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQ   86 (243)
T ss_dssp             HHHHHHHHHHSCT----------TCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             HHHHHHHHHHcCC----------CCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcCCceEEEEc
Confidence            4456666666652          158999999999999999887 2   455678888888877764    223333334


Q ss_pred             cccCCCCCCCcccceEecc-ccccc
Q 019228          307 ASKQLPYPSLSFDMLHCAR-CGVDW  330 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~-~Li~W  330 (344)
                      |...+|++ ++||+|+|.. ++.++
T Consensus        87 d~~~~~~~-~~fD~v~~~~~~~~~~  110 (243)
T 3d2l_A           87 DMRELELP-EPVDAITILCDSLNYL  110 (243)
T ss_dssp             CGGGCCCS-SCEEEEEECTTGGGGC
T ss_pred             ChhhcCCC-CCcCEEEEeCCchhhc
Confidence            56678887 8999999986 66555

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.73  E-value=1.8e-08  Score=88.71  Aligned_cols=74  Identities=18%  Similarity=0.055  Sum_probs=56.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCC------eEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP------AMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvp------a~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+|||||||+|.++..|++.+.   .+.+.|+++.+++.|+++.-.      +.+...|...++ ++++||+|+|..++.
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~  143 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC  143 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred             CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence            3899999999999999988754   456688999999888776311      344444566776 566999999999887


Q ss_pred             ccCc
Q 019228          329 DWDQ  332 (344)
Q Consensus       329 ~W~~  332 (344)
                      ++..
T Consensus       144 ~~~~  147 (235)
T 3lcc_A          144 AIEP  147 (235)
T ss_dssp             TSCG
T ss_pred             cCCH
Confidence            6653

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.73  E-value=2.4e-08  Score=88.51  Aligned_cols=73  Identities=14%  Similarity=0.212  Sum_probs=52.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||+|||+|.++..|++++.   .+.+.|+++.+++.|+++    ++.+.+...|...+|++ ++||+|+|..+.+++
T Consensus        43 ~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~  118 (252)
T 1wzn_A           43 RRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY  118 (252)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred             CEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchhc
Confidence            5899999999999999998864   445678888888877654    33333333456678876 689999987544444


Q ss_pred             C
Q 019228          331 D  331 (344)
Q Consensus       331 ~  331 (344)
                      .
T Consensus       119 ~  119 (252)
T 1wzn_A          119 F  119 (252)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.73  E-value=2.8e-08  Score=90.20  Aligned_cols=74  Identities=14%  Similarity=0.221  Sum_probs=56.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||+|||+|.++..|++++.   .+.+.|+++.+++.|+++    ++.+.+...|...+++ +++||+|+|..++.+.
T Consensus       122 ~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~  197 (286)
T 3m70_A          122 CKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL  197 (286)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred             CcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence            5899999999999999999864   445578888887776654    4444444445667777 8999999999988655


Q ss_pred             Cc
Q 019228          331 DQ  332 (344)
Q Consensus       331 ~~  332 (344)
                      ..
T Consensus       198 ~~  199 (286)
T 3m70_A          198 NR  199 (286)
T ss_dssp             CG
T ss_pred             CH
Confidence            43

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.72  E-value=4.3e-08  Score=82.00  Aligned_cols=102  Identities=18%  Similarity=0.277  Sum_probs=66.9

Q ss_pred             ccceeeecCCCccc--cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHH
Q 019228          214 EEEQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV  291 (344)
Q Consensus       214 eg~~~~FpGggt~F--~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~I  291 (344)
                      .+..+.|.....+|  ...+...+.+.+.+....        ..+|||+|||+|.++..+++++.   .+.+.|+++.++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~   87 (194)
T 1dus_A           19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDK--------DDDILDLGCGYGVIGIALADEVK---STTMADINRRAI   87 (194)
T ss_dssp             TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCT--------TCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHH
T ss_pred             CCCceEEEeCCCcCCccccchHHHHHHHHcccCC--------CCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHH
Confidence            45556664333344  233456677777776432        25899999999999999888733   445567888887


Q ss_pred             HHHHHc----CCC---eEEeeccccCCCCCCCcccceEecccc
Q 019228          292 QLTLER----GLP---AMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       292 q~A~eR----Gvp---a~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      +.|+++    +++   +.+...|... ++++++||+|+|...+
T Consensus        88 ~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~  129 (194)
T 1dus_A           88 KLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPI  129 (194)
T ss_dssp             HHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCS
T ss_pred             HHHHHHHHHcCCCccceEEEECchhc-ccccCCceEEEECCCc
Confidence            777654    443   4333334444 5668899999997654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.70  E-value=3.1e-08  Score=90.64  Aligned_cols=93  Identities=15%  Similarity=0.191  Sum_probs=62.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeec
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSF  306 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~l  306 (344)
                      ..+++.+.+.+...       ....+|||||||+|.++..|++.--....+.+.|+++.+++.|+++    +..+.+...
T Consensus         7 ~~~~~~~~~~~~~~-------~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~   79 (284)
T 3gu3_A            7 DDYVSFLVNTVWKI-------TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEG   79 (284)
T ss_dssp             HHHHHHHHHTTSCC-------CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEES
T ss_pred             hHHHHHHHHHHhcc-------CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEc
Confidence            34556666555311       1235899999999999999988611012445578888888877765    223344445


Q ss_pred             cccCCCCCCCcccceEecccccccC
Q 019228          307 ASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      |...+|++ ++||+|+|..++.++.
T Consensus        80 d~~~~~~~-~~fD~v~~~~~l~~~~  103 (284)
T 3gu3_A           80 DATEIELN-DKYDIAICHAFLLHMT  103 (284)
T ss_dssp             CTTTCCCS-SCEEEEEEESCGGGCS
T ss_pred             chhhcCcC-CCeeEEEECChhhcCC
Confidence            67789985 6999999999886654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.69  E-value=1.4e-08  Score=103.39  Aligned_cols=76  Identities=17%  Similarity=0.174  Sum_probs=58.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cC-CCeEEeeccccCC--CCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RG-LPAMIGSFASKQL--PYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RG-vpa~~~~lda~rL--PFpD~SFDlVhcs~~L  327 (344)
                      -+|||||||+|.++..|++++..   +.+.|+++.+|+.|+.    .+ +.+.+...+++.|  ++++++||+|+|..++
T Consensus        68 ~~vLDvGCG~G~~~~~la~~ga~---V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~  144 (569)
T 4azs_A           68 LNVLDLGCAQGFFSLSLASKGAT---IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF  144 (569)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred             CeEEEECCCCcHHHHHHHhCCCE---EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence            47999999999999999999763   4557888888877654    34 4455555566777  7889999999999999


Q ss_pred             cccCcc
Q 019228          328 VDWDQK  333 (344)
Q Consensus       328 i~W~~~  333 (344)
                      .|-...
T Consensus       145 ehv~~~  150 (569)
T 4azs_A          145 HHIVHL  150 (569)
T ss_dssp             HHHHHH
T ss_pred             hcCCCH
Confidence            765443

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.68  E-value=9.7e-09  Score=94.36  Aligned_cols=77  Identities=18%  Similarity=0.136  Sum_probs=52.3

Q ss_pred             CeEEEECCccchhhHH----HhhC--CceEEEcccccccHHHHHHHHHc-----CCC---eEEeeccccCCC------CC
Q 019228          255 RTILDIGCGYGSFGAH----LFSK--ELLTMCIANYEASGSQVQLTLER-----GLP---AMIGSFASKQLP------YP  314 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~----Laer--~V~~~sIa~~D~sea~Iq~A~eR-----Gvp---a~~~~lda~rLP------Fp  314 (344)
                      .+|||||||+|.++..    ++++  ++. +.+.+.|.++.|++.|+++     +++   +.+...+++.++      |+
T Consensus        54 ~~VLDiG~GtG~~~~~~l~~l~~~~~~~~-v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  132 (292)
T 2aot_A           54 IKILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE  132 (292)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred             CeEEEEcCCCCHHHHHHHHHHHhhCCCce-eeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence            4799999999976643    3332  331 2335678999999888765     332   233344444444      78


Q ss_pred             CCcccceEecccccccCc
Q 019228          315 SLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       315 D~SFDlVhcs~~Li~W~~  332 (344)
                      +++||+|+|..+++++..
T Consensus       133 ~~~fD~V~~~~~l~~~~d  150 (292)
T 2aot_A          133 LQKWDFIHMIQMLYYVKD  150 (292)
T ss_dssp             CCCEEEEEEESCGGGCSC
T ss_pred             CCceeEEEEeeeeeecCC
Confidence            999999999999976653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.67  E-value=3.4e-08  Score=89.51  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=52.9

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..++++ +.   .+.+.|+++.+++.|+++    ++  .+.+...|...+|   ++||+|+|..++
T Consensus        66 ~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l  139 (287)
T 1kpg_A           66 MTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAF  139 (287)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCG
T ss_pred             CEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCch
Confidence            58999999999999998853 43   455578888888888765    32  2333333455565   899999999999


Q ss_pred             cccCc
Q 019228          328 VDWDQ  332 (344)
Q Consensus       328 i~W~~  332 (344)
                      .++..
T Consensus       140 ~~~~~  144 (287)
T 1kpg_A          140 EHFGH  144 (287)
T ss_dssp             GGTCT
T ss_pred             hhcCh
Confidence            77754

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.66  E-value=1.5e-08  Score=93.69  Aligned_cols=80  Identities=10%  Similarity=0.064  Sum_probs=57.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+|||||||+|.++..|+........+.+.|+++.+++.|+++    ++.  +.+...|...+||+ ++||+|+|..+++
T Consensus       120 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~  198 (305)
T 3ocj_A          120 CVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLNI  198 (305)
T ss_dssp             CEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSGG
T ss_pred             CEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChhh
Confidence            5899999999999999853211112455678888888888765    222  34444466789998 9999999999888


Q ss_pred             ccCcccc
Q 019228          329 DWDQKGK  335 (344)
Q Consensus       329 ~W~~~~g  335 (344)
                      ++.....
T Consensus       199 ~~~~~~~  205 (305)
T 3ocj_A          199 YEPDDAR  205 (305)
T ss_dssp             GCCCHHH
T ss_pred             hcCCHHH
Confidence            7765544

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.66  E-value=2.9e-08  Score=84.81  Aligned_cols=65  Identities=15%  Similarity=0.181  Sum_probs=51.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+|||+|||+|.++..|+++.    .+.+.|+++.+++.  ...+.+..+++  .. |+++++||+|+|+...+
T Consensus        25 ~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~--~~-~~~~~~fD~i~~n~~~~   89 (170)
T 3q87_B           25 KIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADL--LC-SINQESVDVVVFNPPYV   89 (170)
T ss_dssp             CEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECST--TT-TBCGGGCSEEEECCCCB
T ss_pred             CeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECCh--hh-hcccCCCCEEEECCCCc
Confidence            489999999999999999886    45667888888776  34566666654  34 78889999999976553

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.64  E-value=3.5e-08  Score=84.80  Aligned_cols=69  Identities=20%  Similarity=0.302  Sum_probs=53.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-CCeEEeeccccCC---CCCCCc-ccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQL---PYPSLS-FDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-vpa~~~~lda~rL---PFpD~S-FDlVhcs~~Li  328 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++. +.+..++  ...+   |++.+. ||+|+|..++.
T Consensus        54 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~fD~v~~~~~l~  127 (227)
T 3e8s_A           54 ERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLAS--YAQLAEAKVPVGKDYDLICANFALL  127 (227)
T ss_dssp             SEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECC--HHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred             CEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhh--HHhhcccccccCCCccEEEECchhh
Confidence            5899999999999999998864   4556789999999998874 3344443  3344   666655 99999998886

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.63  E-value=6.5e-08  Score=88.89  Aligned_cols=88  Identities=17%  Similarity=0.213  Sum_probs=61.5

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--eEEe
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--AMIG  304 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~  304 (344)
                      ..++.+.+.+.+.+        ..+|||||||+|.++..|+++ +.   .+.+.|+++.+++.|+++    +++  +.+.
T Consensus        59 ~~~~~~~~~~~~~~--------~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~  127 (302)
T 3hem_A           59 AKRKLALDKLNLEP--------GMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVR  127 (302)
T ss_dssp             HHHHHHHHTTCCCT--------TCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHHHHcCCCC--------cCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence            34555666555433        258999999999999999887 53   455678888888887765    443  3333


Q ss_pred             eccccCCCCCCCcccceEecccccccCcc
Q 019228          305 SFASKQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      ..|...+   +++||+|+|..++.++...
T Consensus       128 ~~d~~~~---~~~fD~v~~~~~~~~~~d~  153 (302)
T 3hem_A          128 IQGWEEF---DEPVDRIVSLGAFEHFADG  153 (302)
T ss_dssp             ECCGGGC---CCCCSEEEEESCGGGTTCC
T ss_pred             ECCHHHc---CCCccEEEEcchHHhcCcc
Confidence            3344444   8999999999998777443

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.62  E-value=5.7e-08  Score=104.68  Aligned_cols=95  Identities=15%  Similarity=0.146  Sum_probs=69.0

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----------CCC
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------GLP  300 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----------Gvp  300 (344)
                      ...++.+.+.+....        ..+|||||||+|.++..|++++.....+.+.|+++.+++.|+++          +++
T Consensus       707 eqRle~LLelL~~~~--------g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~  778 (950)
T 3htx_A          707 KQRVEYALKHIRESS--------ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK  778 (950)
T ss_dssp             HHHHHHHHHHHHHSC--------CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS
T ss_pred             HHHHHHHHHHhcccC--------CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC
Confidence            455667777765322        35899999999999999998751112456678888999888762          332


Q ss_pred             -eEEeeccccCCCCCCCcccceEecccccccCcc
Q 019228          301 -AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       301 -a~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                       +.+...|...+|+++++||+|+|..++.|+...
T Consensus       779 nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp  812 (950)
T 3htx_A          779 SATLYDGSILEFDSRLHDVDIGTCLEVIEHMEED  812 (950)
T ss_dssp             EEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHH
T ss_pred             ceEEEECchHhCCcccCCeeEEEEeCchhhCChH
Confidence             334445678899999999999999988666543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.60  E-value=1.3e-07  Score=81.78  Aligned_cols=88  Identities=17%  Similarity=0.083  Sum_probs=61.8

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeec
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSF  306 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~l  306 (344)
                      ..+..+.+.+....        ..+|||||||+|.++..|++.+.   .+.+.|.++.+++.|+++    +++ +.+...
T Consensus        64 ~~~~~~~~~l~~~~--------~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~  132 (210)
T 3lbf_A           64 YMVARMTELLELTP--------QSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHG  132 (210)
T ss_dssp             HHHHHHHHHTTCCT--------TCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             HHHHHHHHhcCCCC--------CCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEEC
Confidence            34556666665433        25899999999999999988743   344567888888777664    443 334444


Q ss_pred             cccCCCCCCCcccceEeccccccc
Q 019228          307 ASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      |....++++++||+|++..++.+.
T Consensus       133 d~~~~~~~~~~~D~i~~~~~~~~~  156 (210)
T 3lbf_A          133 DGWQGWQARAPFDAIIVTAAPPEI  156 (210)
T ss_dssp             CGGGCCGGGCCEEEEEESSBCSSC
T ss_pred             CcccCCccCCCccEEEEccchhhh
Confidence            566677788999999998777443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.59  E-value=3.8e-08  Score=94.72  Aligned_cols=77  Identities=17%  Similarity=0.064  Sum_probs=55.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc---------C----CCeEEeeccccCC------CCCC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------G----LPAMIGSFASKQL------PYPS  315 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR---------G----vpa~~~~lda~rL------PFpD  315 (344)
                      .+|||||||+|.++..|++..-....+.+.|+++.+++.|+++         |    ..+.+-..|...+      ||++
T Consensus        85 ~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~  164 (383)
T 4fsd_A           85 ATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPD  164 (383)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCT
T ss_pred             CEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCC
Confidence            5899999999999988877410001445578888888888775         3    2334434456676      9999


Q ss_pred             CcccceEecccccccC
Q 019228          316 LSFDMLHCARCGVDWD  331 (344)
Q Consensus       316 ~SFDlVhcs~~Li~W~  331 (344)
                      ++||+|+|..++.++.
T Consensus       165 ~~fD~V~~~~~l~~~~  180 (383)
T 4fsd_A          165 SSVDIVISNCVCNLST  180 (383)
T ss_dssp             TCEEEEEEESCGGGCS
T ss_pred             CCEEEEEEccchhcCC
Confidence            9999999998886553

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.59  E-value=5.7e-08  Score=83.20  Aligned_cols=105  Identities=13%  Similarity=0.151  Sum_probs=61.0

Q ss_pred             cceeeecCCCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHH
Q 019228          215 EEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT  294 (344)
Q Consensus       215 g~~~~FpGggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A  294 (344)
                      |..+.+|..+ .....+...+.+.+.+.....     ....+|||+|||+|.++..+++++..  .+.+.|.++.+++.|
T Consensus        12 g~~l~~~~~~-~rp~~~~~~~~l~~~l~~~~~-----~~~~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a   83 (189)
T 3p9n_A           12 GRRIAVPPRG-TRPTTDRVRESLFNIVTARRD-----LTGLAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVI   83 (189)
T ss_dssp             TCEEECCSCC-C---CHHHHHHHHHHHHHHSC-----CTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHH
T ss_pred             CcEecCCCCC-CccCcHHHHHHHHHHHHhccC-----CCCCEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHH
Confidence            4455666522 223344455555555532100     12258999999999999988776431  344567777777776


Q ss_pred             HHc----CC-CeEEeeccccCCC--CCCCcccceEecccc
Q 019228          295 LER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARCG  327 (344)
Q Consensus       295 ~eR----Gv-pa~~~~lda~rLP--FpD~SFDlVhcs~~L  327 (344)
                      +++    ++ .+.+-..|+..++  +++++||+|+|....
T Consensus        84 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~  123 (189)
T 3p9n_A           84 ARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY  123 (189)
T ss_dssp             HHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred             HHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence            654    43 2333333444443  568999999997553

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.58  E-value=7.7e-08  Score=88.81  Aligned_cols=71  Identities=15%  Similarity=0.193  Sum_probs=52.8

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..|+++ +.   .+.+.|+++.+++.|+++    ++.  +.+...|...+|   ++||+|+|..++
T Consensus        92 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l  165 (318)
T 2fk8_A           92 MTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAF  165 (318)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCG
T ss_pred             CEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChH
Confidence            58999999999999999876 54   445578888888888765    332  333334455665   899999999988


Q ss_pred             cccC
Q 019228          328 VDWD  331 (344)
Q Consensus       328 i~W~  331 (344)
                      .+..
T Consensus       166 ~~~~  169 (318)
T 2fk8_A          166 EHFG  169 (318)
T ss_dssp             GGTC
T ss_pred             HhcC
Confidence            6664

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.58  E-value=8.9e-08  Score=86.20  Aligned_cols=73  Identities=14%  Similarity=0.076  Sum_probs=54.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCC-CCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPY-PSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPF-pD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..+++.+.  ..+.+.|+++.+++.|+++    ++  .+.+...|...+|+ ++++||+|+|..++
T Consensus        66 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  143 (298)
T 1ri5_A           66 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF  143 (298)
T ss_dssp             CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred             CeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence            5899999999999988887642  1345578888888877765    22  13334446778899 68999999999887


Q ss_pred             cc
Q 019228          328 VD  329 (344)
Q Consensus       328 i~  329 (344)
                      ++
T Consensus       144 ~~  145 (298)
T 1ri5_A          144 HY  145 (298)
T ss_dssp             GG
T ss_pred             hh
Confidence            44

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.57  E-value=1.7e-08  Score=93.43  Aligned_cols=40  Identities=18%  Similarity=0.403  Sum_probs=32.7

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER  297 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR  297 (344)
                      .+|||||||+|.++..|+++  ..   .+.+.|+++.+++.|+++
T Consensus        48 ~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           48 RDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             SEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHT
T ss_pred             CcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHH
Confidence            58999999999999999886  32   455678888888888765

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.57  E-value=1.2e-07  Score=79.16  Aligned_cols=86  Identities=15%  Similarity=0.151  Sum_probs=56.6

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC---eEEeec
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSF  306 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp---a~~~~l  306 (344)
                      ...+.+.+....        ..+|||+|||+|.++..++++. ....+.+.|+++.+++.|+++    +++   ...++.
T Consensus        14 ~~~~~~~~~~~~--------~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~   84 (178)
T 3hm2_A           14 RALAISALAPKP--------HETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGA   84 (178)
T ss_dssp             HHHHHHHHCCCT--------TEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCT
T ss_pred             HHHHHHHhcccC--------CCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecch
Confidence            444555555432        2489999999999999998872 113556678888888888764    444   333332


Q ss_pred             cccCCCCCCCcccceEecccccc
Q 019228          307 ASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~~Li~  329 (344)
                       .+.+|..+++||+|++..++.+
T Consensus        85 -~~~~~~~~~~~D~i~~~~~~~~  106 (178)
T 3hm2_A           85 -PRAFDDVPDNPDVIFIGGGLTA  106 (178)
T ss_dssp             -TGGGGGCCSCCSEEEECC-TTC
T ss_pred             -HhhhhccCCCCCEEEECCcccH
Confidence             1344444489999999887744

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.54  E-value=7e-08  Score=86.85  Aligned_cols=82  Identities=15%  Similarity=0.156  Sum_probs=57.3

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC----CCe--EEe
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPA--MIG  304 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG----vpa--~~~  304 (344)
                      ..+.+.+.+.++..         ..+|||||||+|.++.+++++...  ++.+.|+++.+++.|+++.    ...  ..+
T Consensus        47 ~~~m~~~a~~~~~~---------G~rVLdiG~G~G~~~~~~~~~~~~--~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~  115 (236)
T 3orh_A           47 TPYMHALAAAASSK---------GGRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKG  115 (236)
T ss_dssp             HHHHHHHHHHHTTT---------CEEEEEECCTTSHHHHHHTTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEES
T ss_pred             HHHHHHHHHhhccC---------CCeEEEECCCccHHHHHHHHhCCc--EEEEEeCCHHHHHHHHHHHhhCCCceEEEee
Confidence            44566677766532         248999999999999999887542  4566889999999888752    223  333


Q ss_pred             eccccCCCCCCCcccceEe
Q 019228          305 SFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhc  323 (344)
                      +......++++++||.|++
T Consensus       116 ~a~~~~~~~~~~~FD~i~~  134 (236)
T 3orh_A          116 LWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             CHHHHGGGSCTTCEEEEEE
T ss_pred             hHHhhcccccccCCceEEE
Confidence            3222345899999999974

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.54  E-value=1.2e-07  Score=78.71  Aligned_cols=84  Identities=13%  Similarity=0.229  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEee
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGS  305 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~  305 (344)
                      ....+.+.+.+....        ..+|||+|||+|.++..|++.+.   .+.+.|.++.+++.|+++    +++ +.+..
T Consensus        21 ~~~~~~~~~~~~~~~--------~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   89 (183)
T 2yxd_A           21 EEIRAVSIGKLNLNK--------DDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIK   89 (183)
T ss_dssp             HHHHHHHHHHHCCCT--------TCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHHcCCCC--------CCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence            445566667665432        25899999999999999988543   344567788887777664    332 33333


Q ss_pred             ccccCCCCCCCcccceEeccc
Q 019228          306 FASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~  326 (344)
                      .|... ++++++||+|+|..+
T Consensus        90 ~d~~~-~~~~~~~D~i~~~~~  109 (183)
T 2yxd_A           90 GRAED-VLDKLEFNKAFIGGT  109 (183)
T ss_dssp             SCHHH-HGGGCCCSEEEECSC
T ss_pred             CCccc-cccCCCCcEEEECCc
Confidence            33444 788899999999866

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.53  E-value=5.7e-08  Score=91.48  Aligned_cols=72  Identities=14%  Similarity=0.165  Sum_probs=48.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC---------eEEeec--cc--cCC--CCCC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---------AMIGSF--AS--KQL--PYPS  315 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp---------a~~~~l--da--~rL--PFpD  315 (344)
                      .+|||||||+|.....++..+.  ..+.+.|+++.|++.|+++    +..         ..+.++  ++  ..|  ++++
T Consensus        50 ~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           50 RKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             CEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            5899999999976665555432  1345678888888888775    221         123322  11  233  5789


Q ss_pred             CcccceEeccccc
Q 019228          316 LSFDMLHCARCGV  328 (344)
Q Consensus       316 ~SFDlVhcs~~Li  328 (344)
                      ++||+|+|..+++
T Consensus       128 ~~FD~V~~~~~lh  140 (302)
T 2vdw_A          128 GKFNIIDWQFAIH  140 (302)
T ss_dssp             SCEEEEEEESCGG
T ss_pred             CCeeEEEECchHH
Confidence            9999999998874

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.53  E-value=1.2e-07  Score=87.64  Aligned_cols=74  Identities=19%  Similarity=0.280  Sum_probs=52.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-----------C-CeEEeeccccCCC----CC--CC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------L-PAMIGSFASKQLP----YP--SL  316 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-----------v-pa~~~~lda~rLP----Fp--D~  316 (344)
                      .+|||||||+|.++..|++...  ..+.+.|+++.+++.|.++.           . .+.+...|...+|    |+  ++
T Consensus        36 ~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           36 ITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             CEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            5899999999999999887532  14455788888888777651           1 2333334566665    64  55


Q ss_pred             cccceEecccccccC
Q 019228          317 SFDMLHCARCGVDWD  331 (344)
Q Consensus       317 SFDlVhcs~~Li~W~  331 (344)
                      +||+|+|..++ ||.
T Consensus       114 ~fD~V~~~~~l-~~~  127 (313)
T 3bgv_A          114 CFDICSCQFVC-HYS  127 (313)
T ss_dssp             CEEEEEEETCG-GGG
T ss_pred             CEEEEEEecch-hhc
Confidence            99999999877 776

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.53  E-value=1.5e-07  Score=82.44  Aligned_cols=86  Identities=12%  Similarity=0.138  Sum_probs=60.2

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc-----CCCeEEeec
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSF  306 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR-----Gvpa~~~~l  306 (344)
                      ..++.+.+.+....        ..+|||||||+|.++..|++.+.   .+.+.|.++.+++.|+++     .+.+..++ 
T Consensus        57 ~~~~~~~~~~~~~~--------~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d-  124 (231)
T 1vbf_A           57 NLGIFMLDELDLHK--------GQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLILGD-  124 (231)
T ss_dssp             HHHHHHHHHTTCCT--------TCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEESC-
T ss_pred             HHHHHHHHhcCCCC--------CCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcCCeEEEECC-
Confidence            34566667665433        25899999999999999988652   445578888888888776     23334443 


Q ss_pred             cccCCCCCCCcccceEeccccccc
Q 019228          307 ASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                       ....+.++++||+|++..++.+.
T Consensus       125 -~~~~~~~~~~fD~v~~~~~~~~~  147 (231)
T 1vbf_A          125 -GTLGYEEEKPYDRVVVWATAPTL  147 (231)
T ss_dssp             -GGGCCGGGCCEEEEEESSBBSSC
T ss_pred             -cccccccCCCccEEEECCcHHHH
Confidence             44433357899999999888554

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.53  E-value=1.3e-07  Score=90.15  Aligned_cols=84  Identities=15%  Similarity=0.217  Sum_probs=54.8

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCC--CeEEe
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL--PAMIG  304 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGv--pa~~~  304 (344)
                      ..|.+.|.+.+...+        ..+|||||||+|.++..+++++..  .+.+.|.++ +++.|++    .++  .+.+-
T Consensus        50 ~~~~~~i~~~~~~~~--------~~~VLDiGcGtG~ls~~la~~g~~--~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~  118 (340)
T 2fyt_A           50 ESYRDFIYQNPHIFK--------DKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSE-ILYQAMDIIRLNKLEDTITLI  118 (340)
T ss_dssp             HHHHHHHHHCGGGTT--------TCEEEEETCTTSHHHHHHHHTTCS--EEEEEESST-HHHHHHHHHHHTTCTTTEEEE
T ss_pred             HHHHHHHHhhhhhcC--------CCEEEEeeccCcHHHHHHHHcCCC--EEEEEChHH-HHHHHHHHHHHcCCCCcEEEE
Confidence            445566666554332        258999999999999999887421  223344443 4555544    243  23343


Q ss_pred             eccccCCCCCCCcccceEecc
Q 019228          305 SFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs~  325 (344)
                      ..+...+|+++++||+|+|..
T Consensus       119 ~~d~~~~~~~~~~~D~Ivs~~  139 (340)
T 2fyt_A          119 KGKIEEVHLPVEKVDVIISEW  139 (340)
T ss_dssp             ESCTTTSCCSCSCEEEEEECC
T ss_pred             EeeHHHhcCCCCcEEEEEEcC
Confidence            445778999999999999975

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.52  E-value=1.1e-07  Score=80.53  Aligned_cols=67  Identities=15%  Similarity=0.140  Sum_probs=47.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC-CCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP-FpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..|++++.   .+.+.|.++.+++.|+++    +++ +.+-..+...++ +++++||+|++.
T Consensus        24 ~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           24 SIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             CEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred             CEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence            5899999999999999998743   345578888888777654    432 222223344543 678999999887

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.52  E-value=1.2e-07  Score=86.23  Aligned_cols=71  Identities=11%  Similarity=0.017  Sum_probs=49.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc------C------------------------------
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------G------------------------------  298 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR------G------------------------------  298 (344)
                      .+|||||||+|.++..++..++.  .+.+.|+++.|++.|+++      .                              
T Consensus        57 ~~vLDiGCG~G~~~~~~~~~~~~--~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T 2a14_A           57 DTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  134 (263)
T ss_dssp             EEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             ceEEEeCCCccHHHHHHHHhhhc--ceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence            47999999999888877776642  456678888888877652      0                              


Q ss_pred             CC-eEEeeccccC-CCCC---CCcccceEecccccc
Q 019228          299 LP-AMIGSFASKQ-LPYP---SLSFDMLHCARCGVD  329 (344)
Q Consensus       299 vp-a~~~~lda~r-LPFp---D~SFDlVhcs~~Li~  329 (344)
                      +. +..+++  .. .|++   +++||+|+|+.||.+
T Consensus       135 i~~~~~~D~--~~~~~~~~~~~~~fD~V~~~~~l~~  168 (263)
T 2a14_A          135 VKRVLKCDV--HLGNPLAPAVLPLADCVLTLLAMEC  168 (263)
T ss_dssp             EEEEEECCT--TSSSTTTTCCCCCEEEEEEESCHHH
T ss_pred             hheEEeccc--cCCCCCCccccCCCCEeeehHHHHH
Confidence            11 334443  33 4654   789999999998843

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.52  E-value=1.6e-07  Score=82.26  Aligned_cols=89  Identities=11%  Similarity=0.042  Sum_probs=58.6

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC-CeEE
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMI  303 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv-pa~~  303 (344)
                      ..+...+.+.+++....       ...+|||+|||+|.++..+++++..  .+.+.|.++.+++.|+++    ++ .+.+
T Consensus        37 ~~~~~~~~l~~~l~~~~-------~~~~vLDlgcG~G~~~~~l~~~~~~--~V~~vD~s~~~l~~a~~~~~~~~~~~v~~  107 (202)
T 2fpo_A           37 TTDRVRETLFNWLAPVI-------VDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARV  107 (202)
T ss_dssp             -CHHHHHHHHHHHHHHH-------TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             CHHHHHHHHHHHHHhhc-------CCCeEEEeCCCcCHHHHHHHhcCCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEE
Confidence            34555666666654210       1258999999999999987776531  445678888888777653    33 3333


Q ss_pred             eeccccC-CCCCCCcccceEeccc
Q 019228          304 GSFASKQ-LPYPSLSFDMLHCARC  326 (344)
Q Consensus       304 ~~lda~r-LPFpD~SFDlVhcs~~  326 (344)
                      -..|+.. +|+++++||+|++...
T Consensus       108 ~~~D~~~~~~~~~~~fD~V~~~~p  131 (202)
T 2fpo_A          108 VNSNAMSFLAQKGTPHNIVFVDPP  131 (202)
T ss_dssp             ECSCHHHHHSSCCCCEEEEEECCS
T ss_pred             EECCHHHHHhhcCCCCCEEEECCC
Confidence            3334444 6888899999999754

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.51  E-value=2e-07  Score=89.07  Aligned_cols=69  Identities=16%  Similarity=0.200  Sum_probs=48.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC--eEEeeccccCCCCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp--a~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      .+|||||||+|.++..+++++..  .+.+.|.++ +++.|++    .++.  +.+-..+.+.+|+++++||+|+|...
T Consensus        68 ~~VLDvGcG~G~~~~~la~~g~~--~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           68 KVVLDVGSGTGILCMFAAKAGAR--KVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM  142 (349)
T ss_dssp             CEEEEESCTTSHHHHHHHHTTCS--EEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             CEEEEEeccchHHHHHHHHCCCC--EEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence            58999999999999999987421  223345552 4544443    3543  44444567889999999999999654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.50  E-value=4e-07  Score=78.52  Aligned_cols=69  Identities=16%  Similarity=0.187  Sum_probs=49.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||+|||+|.++..|++.+.  ..+.+.|.++.+++.|+++    ++. +.+...|  -+++++++||+|+|...+
T Consensus        62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d--~~~~~~~~fD~i~~~~~~  135 (205)
T 3grz_A           62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTS--LLADVDGKFDLIVANILA  135 (205)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESS--TTTTCCSCEEEEEEESCH
T ss_pred             CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEecc--ccccCCCCceEEEECCcH
Confidence            5899999999999999988743  1345578888888777764    433 3333333  345678999999997554

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.49  E-value=6.6e-08  Score=92.28  Aligned_cols=77  Identities=14%  Similarity=0.309  Sum_probs=54.6

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----C----CCeEEeeccccCCCCCCCcccceEe
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----G----LPAMIGSFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----G----vpa~~~~lda~rLPFpD~SFDlVhc  323 (344)
                      ..+|||||||+|.++..|+++  +.   .+...|+ +.+++.|+++    +    +.+..+++-...+|+| ++||+|++
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~  254 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWM  254 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTC---EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEE
Confidence            468999999999999999874  32   3344566 6677777664    3    3344454422223777 89999999


Q ss_pred             cccccccCcccc
Q 019228          324 ARCGVDWDQKGK  335 (344)
Q Consensus       324 s~~Li~W~~~~g  335 (344)
                      ..++++|...+-
T Consensus       255 ~~vlh~~~~~~~  266 (363)
T 3dp7_A          255 SQFLDCFSEEEV  266 (363)
T ss_dssp             ESCSTTSCHHHH
T ss_pred             echhhhCCHHHH
Confidence            999999987643

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.49  E-value=2.5e-07  Score=85.68  Aligned_cols=74  Identities=18%  Similarity=0.217  Sum_probs=53.5

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      .+|||||||+|.++..++++  +.   .+...|++ .+++.|+++    ++.  +.+...|...+|++++ ||+|+|..+
T Consensus       167 ~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~~~~  241 (335)
T 2r3s_A          167 LKVLDISASHGLFGIAVAQHNPNA---EIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNF  241 (335)
T ss_dssp             SEEEEETCTTCHHHHHHHHHCTTC---EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSC-EEEEEEESC
T ss_pred             CEEEEECCCcCHHHHHHHHHCCCC---eEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCC-CcEEEEcch
Confidence            58999999999999998876  32   34456777 677766654    332  3333345556788776 999999999


Q ss_pred             ccccCcc
Q 019228          327 GVDWDQK  333 (344)
Q Consensus       327 Li~W~~~  333 (344)
                      +++|...
T Consensus       242 l~~~~~~  248 (335)
T 2r3s_A          242 LHHFDVA  248 (335)
T ss_dssp             GGGSCHH
T ss_pred             hccCCHH
Confidence            9999654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.48  E-value=2e-07  Score=85.02  Aligned_cols=54  Identities=17%  Similarity=0.043  Sum_probs=34.3

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE  296 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e  296 (344)
                      ++.+.+.+....      ....+|||||||+|.++..++.. +.   .+.+.|+++.|++.|++
T Consensus        58 ~~~l~~~l~~~~------~~~~~vLDiGcG~G~~~~l~~~~~~~---~v~gvD~s~~~l~~a~~  112 (289)
T 2g72_A           58 LRCLAQTFATGE------VSGRTLIDIGSGPTVYQLLSACSHFE---DITMTDFLEVNRQELGR  112 (289)
T ss_dssp             HHHHHHHHHTSC------SCCSEEEEETCTTCCGGGTTGGGGCS---EEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHhCCCC------CCCCeEEEECCCcChHHHHhhccCCC---eEEEeCCCHHHHHHHHH
Confidence            555666664321      12358999999999855444432 22   44557888888887765

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.48  E-value=2.6e-07  Score=81.77  Aligned_cols=72  Identities=15%  Similarity=0.091  Sum_probs=52.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CC--------------------------------
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LP--------------------------------  300 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vp--------------------------------  300 (344)
                      .+|||||||+|.++..++..+.  ..+.+.|+++.+++.|+++-  .+                                
T Consensus        58 ~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           58 ELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             EEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            5799999999999998887764  35666788888888876541  11                                


Q ss_pred             e-EEeeccccCC-CCCC---CcccceEeccccc
Q 019228          301 A-MIGSFASKQL-PYPS---LSFDMLHCARCGV  328 (344)
Q Consensus       301 a-~~~~lda~rL-PFpD---~SFDlVhcs~~Li  328 (344)
                      + .+...|...+ |+++   ++||+|+|..++.
T Consensus       136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~  168 (265)
T 2i62_A          136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD  168 (265)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH
T ss_pred             heeEEEeeeccCCCCCccccCCccEEEEhhhhh
Confidence            2 2333345554 4567   9999999999886

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.48  E-value=1.3e-07  Score=79.56  Aligned_cols=86  Identities=14%  Similarity=0.172  Sum_probs=55.9

Q ss_pred             hhHHHHHHHHhc-cccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEE
Q 019228          231 EDYSHQIAEMIG-LRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMI  303 (344)
Q Consensus       231 ~~yId~I~e~Lp-l~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~  303 (344)
                      +...+.+.+.+. ..        ...+|||+|||+|.++..+++++.  ..+.+.|+++.+++.|+++    ++.  +.+
T Consensus        16 ~~~~~~~~~~l~~~~--------~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~   85 (177)
T 2esr_A           16 DKVRGAIFNMIGPYF--------NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTL   85 (177)
T ss_dssp             --CHHHHHHHHCSCC--------CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEE
T ss_pred             HHHHHHHHHHHHhhc--------CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEE
Confidence            334555666654 22        125899999999999999988742  2455678888888877654    332  333


Q ss_pred             eeccccC-CCCCCCcccceEeccc
Q 019228          304 GSFASKQ-LPYPSLSFDMLHCARC  326 (344)
Q Consensus       304 ~~lda~r-LPFpD~SFDlVhcs~~  326 (344)
                      -..|... +|..+++||+|++...
T Consensus        86 ~~~d~~~~~~~~~~~fD~i~~~~~  109 (177)
T 2esr_A           86 LKMEAERAIDCLTGRFDLVFLDPP  109 (177)
T ss_dssp             ECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             EECcHHHhHHhhcCCCCEEEECCC
Confidence            3334444 5666778999999743

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.46  E-value=2.6e-07  Score=77.62  Aligned_cols=100  Identities=14%  Similarity=0.082  Sum_probs=62.2

Q ss_pred             ceeeecCCCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH
Q 019228          216 EQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL  295 (344)
Q Consensus       216 ~~~~FpGggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~  295 (344)
                      .++.+|.+.......+.+++.+.+.+....       ...+|||+|||+|.++..+++++.  ..+.+.|+++.+++.|+
T Consensus        14 ~~~~~~~~~~~rp~~~~~~~~~~~~l~~~~-------~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~   84 (187)
T 2fhp_A           14 RRLKALDGDNTRPTTDKVKESIFNMIGPYF-------DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIK   84 (187)
T ss_dssp             CBCCCCCCCSSCCCCHHHHHHHHHHHCSCC-------SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHH
T ss_pred             ccccCCCCCCcCcCHHHHHHHHHHHHHhhc-------CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHH
Confidence            344444332222355667777777774210       125899999999999998887642  13455677777777766


Q ss_pred             Hc----CC----CeEEeeccccC----CCCCCCcccceEeccc
Q 019228          296 ER----GL----PAMIGSFASKQ----LPYPSLSFDMLHCARC  326 (344)
Q Consensus       296 eR----Gv----pa~~~~lda~r----LPFpD~SFDlVhcs~~  326 (344)
                      ++    ++    .+..++  ...    +|+++++||+|++...
T Consensus        85 ~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~fD~i~~~~~  125 (187)
T 2fhp_A           85 ENIAITKEPEKFEVRKMD--ANRALEQFYEEKLQFDLVLLDPP  125 (187)
T ss_dssp             HHHHHHTCGGGEEEEESC--HHHHHHHHHHTTCCEEEEEECCC
T ss_pred             HHHHHhCCCcceEEEECc--HHHHHHHHHhcCCCCCEEEECCC
Confidence            53    33    233443  333    3455889999999755

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.44  E-value=5.9e-07  Score=84.94  Aligned_cols=86  Identities=17%  Similarity=0.290  Sum_probs=55.2

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC--eEE
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMI  303 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp--a~~  303 (344)
                      ...|.+.|.+.+....+        .+|||||||+|.++..+++++..  .+.+.|.+ .+++.|++    .++.  +.+
T Consensus        23 ~~~y~~ai~~~~~~~~~--------~~VLDiGcGtG~ls~~la~~g~~--~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~   91 (328)
T 1g6q_1           23 TLSYRNAIIQNKDLFKD--------KIVLDVGCGTGILSMFAAKHGAK--HVIGVDMS-SIIEMAKELVELNGFSDKITL   91 (328)
T ss_dssp             HHHHHHHHHHHHHHHTT--------CEEEEETCTTSHHHHHHHHTCCS--EEEEEESS-THHHHHHHHHHHTTCTTTEEE
T ss_pred             HHHHHHHHHhhHhhcCC--------CEEEEecCccHHHHHHHHHCCCC--EEEEEChH-HHHHHHHHHHHHcCCCCCEEE
Confidence            35566667665543322        58999999999999999887421  22233444 24444443    3442  333


Q ss_pred             eeccccCCCCCCCcccceEeccc
Q 019228          304 GSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      -..+...+++++++||+|+|...
T Consensus        92 ~~~d~~~~~~~~~~~D~Ivs~~~  114 (328)
T 1g6q_1           92 LRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             EESCTTTSCCSSSCEEEEEECCC
T ss_pred             EECchhhccCCCCcccEEEEeCc
Confidence            34456788999999999999743

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.44  E-value=5.5e-07  Score=77.51  Aligned_cols=70  Identities=11%  Similarity=0.197  Sum_probs=50.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--CCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      .+|||+|||+|.++..+++.+..  .+.+.|+++.+++.|+++  .+.+..++  ...+|   ++||+|++...+.++.
T Consensus        53 ~~vlD~gcG~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~d--~~~~~---~~~D~v~~~~p~~~~~  124 (200)
T 1ne2_A           53 RSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVAD--VSEIS---GKYDTWIMNPPFGSVV  124 (200)
T ss_dssp             SEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECC--GGGCC---CCEEEEEECCCC----
T ss_pred             CEEEEEeCCccHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhcCCCEEEECc--HHHCC---CCeeEEEECCCchhcc
Confidence            58999999999999999887431  345578888899888876  35555554  45565   7999999987775554

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.43  E-value=8.7e-07  Score=86.52  Aligned_cols=70  Identities=20%  Similarity=0.184  Sum_probs=53.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||+|||+|.++..+++++.   .+.+.|+++.+++.|+++    ++.+.+...|...+++++++||+|+|...+
T Consensus       235 ~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~  308 (381)
T 3dmg_A          235 RQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPF  308 (381)
T ss_dssp             CEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCC
T ss_pred             CEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCch
Confidence            5899999999999999998864   445678888888777653    444444444667888888999999997665

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.42  E-value=3.2e-07  Score=80.27  Aligned_cols=70  Identities=17%  Similarity=0.121  Sum_probs=48.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC---CeEEeeccccCC-CC-CCCc-ccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-PY-PSLS-FDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv---pa~~~~lda~rL-PF-pD~S-FDlVhcs  324 (344)
                      .+|||+|||+|.++..++.++.  ..+.+.|.++.+++.|+++    ++   .+.+-..|+..+ +. ++++ ||+|++.
T Consensus        55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            4799999999999998777653  1345578888888877653    44   233333344443 32 4788 9999997


Q ss_pred             cc
Q 019228          325 RC  326 (344)
Q Consensus       325 ~~  326 (344)
                      ..
T Consensus       133 ~~  134 (201)
T 2ift_A          133 PP  134 (201)
T ss_dssp             CC
T ss_pred             CC
Confidence            55

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.42  E-value=2.9e-07  Score=86.27  Aligned_cols=92  Identities=14%  Similarity=0.069  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEee
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGS  305 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~  305 (344)
                      ...++.+.+.+...++        .+|||||||+|.++..|++.......+.+.|+++.+++.|+++    +++ +.+..
T Consensus        61 ~~~~~~l~~~l~~~~~--------~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~  132 (317)
T 1dl5_A           61 PSLMALFMEWVGLDKG--------MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC  132 (317)
T ss_dssp             HHHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHhcCCCCc--------CEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEE
Confidence            3456677777765433        5899999999999999887521101234467777777777654    443 33334


Q ss_pred             ccccCCCCCCCcccceEeccccccc
Q 019228          306 FASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .|...++.++++||+|++..++.+.
T Consensus       133 ~d~~~~~~~~~~fD~Iv~~~~~~~~  157 (317)
T 1dl5_A          133 GDGYYGVPEFSPYDVIFVTVGVDEV  157 (317)
T ss_dssp             SCGGGCCGGGCCEEEEEECSBBSCC
T ss_pred             CChhhccccCCCeEEEEEcCCHHHH
Confidence            4556666678899999999877443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.41  E-value=2.9e-07  Score=81.34  Aligned_cols=71  Identities=13%  Similarity=0.100  Sum_probs=52.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+|||+|||+|.++..|++++.   .+.+.|+++.+++.|+++    ++  .+.+-..|...++ ++++||+|++...+.
T Consensus        80 ~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           80 DVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG  155 (241)
T ss_dssp             SEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred             CEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence            5899999999999999998863   445678888888777654    44  2334334556666 778999999986654


Q ss_pred             c
Q 019228          329 D  329 (344)
Q Consensus       329 ~  329 (344)
                      +
T Consensus       156 ~  156 (241)
T 3gdh_A          156 G  156 (241)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.39  E-value=2e-07  Score=82.35  Aligned_cols=74  Identities=9%  Similarity=0.035  Sum_probs=53.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC--CeEEeeccccCCCCCC-----CcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--PAMIGSFASKQLPYPS-----LSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv--pa~~~~lda~rLPFpD-----~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++..  .+.+...|...++++.     ..||+|+|..++
T Consensus        58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~  134 (245)
T 3ggd_A           58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF  134 (245)
T ss_dssp             SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred             CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchh
Confidence            4799999999999999988753   34457888889988887631  2333334555665543     349999999888


Q ss_pred             cccC
Q 019228          328 VDWD  331 (344)
Q Consensus       328 i~W~  331 (344)
                      ++..
T Consensus       135 ~~~~  138 (245)
T 3ggd_A          135 HHIP  138 (245)
T ss_dssp             TTSC
T ss_pred             hcCC
Confidence            5554

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.38  E-value=1.1e-06  Score=81.20  Aligned_cols=98  Identities=10%  Similarity=0.102  Sum_probs=63.9

Q ss_pred             ccceeeecCCCcccc-chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHH
Q 019228          214 EEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ  292 (344)
Q Consensus       214 eg~~~~FpGggt~F~-g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq  292 (344)
                      .|-++.+.-..++|. ........+.+++..          ..+|||+|||+|.++..+++++..  .+.+.|.++.+++
T Consensus        95 ~g~~f~~d~~~~~f~~~~~~~~~~l~~~~~~----------~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~  162 (278)
T 2frn_A           95 NGIKYKLDVAKIMFSPANVKERVRMAKVAKP----------DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFK  162 (278)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHHHHHHCCT----------TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHH
T ss_pred             CCEEEEEEccceeEcCCcHHHHHHHHHhCCC----------CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHH
Confidence            444555544445553 433445556655431          258999999999999999886432  3445678888877


Q ss_pred             HHHHc----CCC--eEEeeccccCCCCCCCcccceEec
Q 019228          293 LTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       293 ~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .|++.    ++.  +.+-..|+..+++ +++||+|++.
T Consensus       163 ~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~  199 (278)
T 2frn_A          163 FLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMG  199 (278)
T ss_dssp             HHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred             HHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEEC
Confidence            76653    553  3344456777776 8899999995

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.36  E-value=1.3e-06  Score=83.18  Aligned_cols=93  Identities=18%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC--eEE
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMI  303 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp--a~~  303 (344)
                      ...|.+.|.+.+....        ..+|||||||+|.++..+++++..  .+.+.|.++ +++.|++    .++.  +.+
T Consensus        35 ~~~y~~~i~~~l~~~~--------~~~VLDiGcGtG~ls~~la~~g~~--~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~  103 (348)
T 2y1w_A           35 TGTYQRAILQNHTDFK--------DKIVLDVGCGSGILSFFAAQAGAR--KIYAVEAST-MAQHAEVLVKSNNLTDRIVV  103 (348)
T ss_dssp             HHHHHHHHHHTGGGTT--------TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECST-HHHHHHHHHHHTTCTTTEEE
T ss_pred             HHHHHHHHHhccccCC--------cCEEEEcCCCccHHHHHHHhCCCC--EEEEECCHH-HHHHHHHHHHHcCCCCcEEE
Confidence            3556677777665432        258999999999999998887421  122234442 4444433    3442  333


Q ss_pred             eeccccCCCCCCCcccceEecccccccCccc
Q 019228          304 GSFASKQLPYPSLSFDMLHCARCGVDWDQKG  334 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhcs~~Li~W~~~~  334 (344)
                      -..+...++++ ++||+|+|...+.+|...+
T Consensus       104 ~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~  133 (348)
T 2y1w_A          104 IPGKVEEVSLP-EQVDIIISEPMGYMLFNER  133 (348)
T ss_dssp             EESCTTTCCCS-SCEEEEEECCCBTTBTTTS
T ss_pred             EEcchhhCCCC-CceeEEEEeCchhcCChHH
Confidence            33456677776 6899999988877776543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.36  E-value=7.4e-07  Score=80.54  Aligned_cols=68  Identities=19%  Similarity=0.269  Sum_probs=50.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCC--CCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLP--YPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLP--FpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..|+++...  .+.+.|+++.+++.|++.    ++.  +.+-..|...++  +++++||+|+|+
T Consensus        51 ~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n  126 (259)
T 3lpm_A           51 GKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN  126 (259)
T ss_dssp             CEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred             CEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence            58999999999999999987431  456678888888777654    432  333334455554  678999999996

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.35  E-value=1.1e-06  Score=77.38  Aligned_cols=70  Identities=14%  Similarity=0.067  Sum_probs=48.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||+|||+|.++..+++++.   .+.+.|.++.+++.|+++    +++  +.+-..|.........+||+|++...+
T Consensus        57 ~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~  132 (204)
T 3njr_A           57 ELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG  132 (204)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred             CEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence            5899999999999999988743   345568888888777654    444  333333444533334689999987543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.34  E-value=5.8e-07  Score=76.81  Aligned_cols=72  Identities=15%  Similarity=0.145  Sum_probs=50.8

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCC-CCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLP-FpD~SFDlVhcs~~  326 (344)
                      .+|||+|||+|.++..++++ +.. ..+.+.|.++.+++.|+++    ++  .+.+-..|...++ +.+++||+|++...
T Consensus        24 ~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  102 (197)
T 3eey_A           24 DTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLG  102 (197)
T ss_dssp             CEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEES
T ss_pred             CEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCC
Confidence            58999999999999988875 100 1345567888888777654    33  2344444556676 78899999999865


Q ss_pred             c
Q 019228          327 G  327 (344)
Q Consensus       327 L  327 (344)
                      +
T Consensus       103 ~  103 (197)
T 3eey_A          103 Y  103 (197)
T ss_dssp             B
T ss_pred             c
Confidence            5

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.33  E-value=4.8e-07  Score=79.97  Aligned_cols=74  Identities=11%  Similarity=0.195  Sum_probs=53.0

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC--CCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP--YPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP--FpD~SFDlVhcs~  325 (344)
                      .+|||||||+|.++..|+++  +.   .+.+.|+++.+++.|+++    +++ +.+-..|+..++  |++++||.|++..
T Consensus        40 ~~vLDiGcG~G~~~~~la~~~p~~---~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           40 PIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             ceEEEEecCCCHHHHHHHHHCCCC---CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            47999999999999999875  32   344578888888777654    443 334344566677  8899999998864


Q ss_pred             cccccCc
Q 019228          326 CGVDWDQ  332 (344)
Q Consensus       326 ~Li~W~~  332 (344)
                      . .+|..
T Consensus       117 ~-~p~~~  122 (213)
T 2fca_A          117 S-DPWPK  122 (213)
T ss_dssp             C-CCCCS
T ss_pred             C-CCCcC
Confidence            3 36654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.33  E-value=9.9e-07  Score=82.82  Aligned_cols=79  Identities=11%  Similarity=0.128  Sum_probs=54.5

Q ss_pred             CeEEEECCccch----hhHHHhhC-Cc-e-EEEcccccccHHHHHHHHHcC--------C--------------------
Q 019228          255 RTILDIGCGYGS----FGAHLFSK-EL-L-TMCIANYEASGSQVQLTLERG--------L--------------------  299 (344)
Q Consensus       255 r~VLDVGCGtGs----faa~Laer-~V-~-~~sIa~~D~sea~Iq~A~eRG--------v--------------------  299 (344)
                      .+|||+|||||.    ++..|++. +. . ...|.+.|+++.+++.|++.-        +                    
T Consensus       107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~  186 (274)
T 1af7_A          107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV  186 (274)
T ss_dssp             EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred             cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCce
Confidence            379999999996    66666653 21 0 136677899999999987631        1                    


Q ss_pred             --------CeEEeeccccCCCCC-CCcccceEecccccccCcc
Q 019228          300 --------PAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       300 --------pa~~~~lda~rLPFp-D~SFDlVhcs~~Li~W~~~  333 (344)
                              .+.+...|....||+ ++.||+|+|..+++++.+.
T Consensus       187 ~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~  229 (274)
T 1af7_A          187 RVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT  229 (274)
T ss_dssp             EECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH
T ss_pred             eechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHH
Confidence                    122333344566787 6899999999999877543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.33  E-value=1.3e-06  Score=84.25  Aligned_cols=67  Identities=16%  Similarity=0.201  Sum_probs=45.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC--eEEeeccccCCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp--a~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .+|||||||+|.++..+++++..  .+.+.|.+ .+++.|++    .++.  +.+-..+.+.++++ ++||+|+|..
T Consensus        65 ~~VLDlGcGtG~ls~~la~~g~~--~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~  137 (376)
T 3r0q_C           65 KTVLDVGTGSGILAIWSAQAGAR--KVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW  137 (376)
T ss_dssp             CEEEEESCTTTHHHHHHHHTTCS--EEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECC
T ss_pred             CEEEEeccCcCHHHHHHHhcCCC--EEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcC
Confidence            58999999999999999987531  22334444 44444433    3443  34444456788888 9999999954

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.33  E-value=9e-07  Score=82.40  Aligned_cols=81  Identities=19%  Similarity=0.183  Sum_probs=57.6

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEe
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIG  304 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~  304 (344)
                      ...++.|.+.+....        ..+|||||||+|.++..|++++.   .+.+.|+++.+++.+.++    +.  .+.+.
T Consensus        14 ~~i~~~i~~~~~~~~--------~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~   82 (285)
T 1zq9_A           14 PLIINSIIDKAALRP--------TDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVL   82 (285)
T ss_dssp             HHHHHHHHHHTCCCT--------TCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEE
T ss_pred             HHHHHHHHHhcCCCC--------CCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEE
Confidence            446777888776543        25899999999999999998753   344567888888777664    22  23333


Q ss_pred             eccccCCCCCCCcccceEec
Q 019228          305 SFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs  324 (344)
                      ..|+..++++  +||+|+++
T Consensus        83 ~~D~~~~~~~--~fD~vv~n  100 (285)
T 1zq9_A           83 VGDVLKTDLP--FFDTCVAN  100 (285)
T ss_dssp             ESCTTTSCCC--CCSEEEEE
T ss_pred             Ecceecccch--hhcEEEEe
Confidence            4456677776  79999995

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.33  E-value=5.4e-07  Score=85.61  Aligned_cols=81  Identities=16%  Similarity=0.186  Sum_probs=55.8

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHc--C-CCeEEee
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLER--G-LPAMIGS  305 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eR--G-vpa~~~~  305 (344)
                      ...++.|.+.+....+        .+|||||||+|.++..|++++  |+++     |+++.+++.++++  + -.+.+-.
T Consensus        36 ~~i~~~Iv~~l~~~~~--------~~VLEIG~G~G~lT~~La~~~~~V~aV-----Eid~~li~~a~~~~~~~~~v~vi~  102 (295)
T 3gru_A           36 KNFVNKAVESANLTKD--------DVVLEIGLGKGILTEELAKNAKKVYVI-----EIDKSLEPYANKLKELYNNIEIIW  102 (295)
T ss_dssp             HHHHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHSSEEEEE-----ESCGGGHHHHHHHHHHCSSEEEEE
T ss_pred             HHHHHHHHHhcCCCCc--------CEEEEECCCchHHHHHHHhcCCEEEEE-----ECCHHHHHHHHHHhccCCCeEEEE
Confidence            4567778887765432        589999999999999998863  4444     4444455554443  1 1233333


Q ss_pred             ccccCCCCCCCcccceEec
Q 019228          306 FASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs  324 (344)
                      .|+..+++++.+||+|+++
T Consensus       103 gD~l~~~~~~~~fD~Iv~N  121 (295)
T 3gru_A          103 GDALKVDLNKLDFNKVVAN  121 (295)
T ss_dssp             SCTTTSCGGGSCCSEEEEE
T ss_pred             CchhhCCcccCCccEEEEe
Confidence            4677899999999999976

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.31  E-value=1.7e-06  Score=76.54  Aligned_cols=67  Identities=13%  Similarity=0.157  Sum_probs=49.2

Q ss_pred             CeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHc-----CCC-eEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER-----GLP-AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eR-----Gvp-a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..|++.   +.   .+.+.|.++.+++.|+++     +.+ +.+...|...+|+++++||+|++.
T Consensus        98 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~  173 (258)
T 2pwy_A           98 MRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD  173 (258)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred             CEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC
Confidence            58999999999999988876   32   334467777777777665     432 333344566778999999999984

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.31  E-value=4.8e-07  Score=74.68  Aligned_cols=90  Identities=21%  Similarity=0.175  Sum_probs=56.2

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEe
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIG  304 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~  304 (344)
                      ..+...+.+.+.+....      ....+|||+|||+|.++..+++++..   +.+.|.++.+++.|+++    ++.+.+.
T Consensus        23 ~~~~~~~~~~~~~~~~~------~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~   93 (171)
T 1ws6_A           23 SPVRLRKALFDYLRLRY------PRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVV   93 (171)
T ss_dssp             CCHHHHHHHHHHHHHHC------TTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEE
T ss_pred             CHHHHHHHHHHHHHhhc------cCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEE
Confidence            34555566666554210      01258999999999999999988643   55678888888877654    3223332


Q ss_pred             eccccC-CCCC---CCcccceEecccc
Q 019228          305 SFASKQ-LPYP---SLSFDMLHCARCG  327 (344)
Q Consensus       305 ~lda~r-LPFp---D~SFDlVhcs~~L  327 (344)
                      ..|... +|..   +++||+|++....
T Consensus        94 ~~d~~~~~~~~~~~~~~~D~i~~~~~~  120 (171)
T 1ws6_A           94 ALPVEVFLPEAKAQGERFTVAFMAPPY  120 (171)
T ss_dssp             CSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred             eccHHHHHHhhhccCCceEEEEECCCC
Confidence            223333 3321   3489999998544

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.30  E-value=5.6e-07  Score=82.19  Aligned_cols=86  Identities=13%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEe
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIG  304 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~  304 (344)
                      +..++.+.++++.          ..+|||+|||+|.++..++...-.+ .+.+.|+++.|+++|.++    |+.  +.+.
T Consensus        37 d~fY~~~~~~l~~----------~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~  105 (200)
T 3fzg_A           37 NDFYTYVFGNIKH----------VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFL  105 (200)
T ss_dssp             HHHHHHHHHHSCC----------CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEE
T ss_pred             HHHHHHHHhhcCC----------CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEe
Confidence            4456666676652          3589999999999999997763222 566789999999888764    555  3444


Q ss_pred             eccccCCCCCCCcccceEeccccccc
Q 019228          305 SFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      +.  . ...+.++||+|....+++.-
T Consensus       106 d~--~-~~~~~~~~DvVLa~k~LHlL  128 (200)
T 3fzg_A          106 NK--E-SDVYKGTYDVVFLLKMLPVL  128 (200)
T ss_dssp             CC--H-HHHTTSEEEEEEEETCHHHH
T ss_pred             cc--c-ccCCCCCcChhhHhhHHHhh
Confidence            32  2 23678999999998877544

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.30  E-value=1.1e-06  Score=83.79  Aligned_cols=72  Identities=10%  Similarity=0.089  Sum_probs=43.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEE-eeccccCCC---CCCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI-GSFASKQLP---YPSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~-~~lda~rLP---FpD~SFDlVhcs~~Li  328 (344)
                      .+|||||||||.|+..|++++..  .+.+.|+++.|++.++++...+.. ...+.+.++   ++..+||+|+|..+++
T Consensus        87 ~~vLDiGcGTG~~t~~L~~~ga~--~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~  162 (291)
T 3hp7_A           87 MITIDIGASTGGFTDVMLQNGAK--LVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI  162 (291)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCS--EEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS
T ss_pred             cEEEecCCCccHHHHHHHhCCCC--EEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh
Confidence            58999999999999999887421  223345555555554443322221 111222333   3456799999976664

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.30  E-value=2.9e-07  Score=86.82  Aligned_cols=72  Identities=25%  Similarity=0.398  Sum_probs=50.3

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CC----CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gv----pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||||||+|.++..|+++  ++   .+...|+ +.+++.|+++    ++    .+..+++  .. ++|.+ ||+|+|.
T Consensus       184 ~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~-~~~~~-~D~v~~~  255 (374)
T 1qzz_A          184 RHVLDVGGGNGGMLAAIALRAPHL---RGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF--FK-PLPVT-ADVVLLS  255 (374)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT--TS-CCSCC-EEEEEEE
T ss_pred             CEEEEECCCcCHHHHHHHHHCCCC---EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCC--CC-cCCCC-CCEEEEe
Confidence            58999999999999998875  33   2334566 6777776653    33    3344443  22 45544 9999999


Q ss_pred             ccccccCccc
Q 019228          325 RCGVDWDQKG  334 (344)
Q Consensus       325 ~~Li~W~~~~  334 (344)
                      .++++|...+
T Consensus       256 ~vl~~~~~~~  265 (374)
T 1qzz_A          256 FVLLNWSDED  265 (374)
T ss_dssp             SCGGGSCHHH
T ss_pred             ccccCCCHHH
Confidence            9999987654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.30  E-value=1.2e-06  Score=75.91  Aligned_cols=59  Identities=15%  Similarity=0.168  Sum_probs=45.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||||||+|.++..|. ..++++++.+.             .+.+..++  ...+|+++++||+|+|..++ +|
T Consensus        69 ~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~-------------~~~~~~~d--~~~~~~~~~~fD~v~~~~~l-~~  127 (215)
T 2zfu_A           69 LVVADFGCGDCRLASSIR-NPVHCFDLASL-------------DPRVTVCD--MAQVPLEDESVDVAVFCLSL-MG  127 (215)
T ss_dssp             SCEEEETCTTCHHHHHCC-SCEEEEESSCS-------------STTEEESC--TTSCSCCTTCEEEEEEESCC-CS
T ss_pred             CeEEEECCcCCHHHHHhh-ccEEEEeCCCC-------------CceEEEec--cccCCCCCCCEeEEEEehhc-cc
Confidence            579999999999998884 45666555443             35555554  56799999999999999888 44

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.29  E-value=1.2e-06  Score=72.93  Aligned_cols=83  Identities=14%  Similarity=0.167  Sum_probs=54.3

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeec
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSF  306 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~l  306 (344)
                      ....+.+.+....        ..+|||+|||+|.++..+++...   .+.+.|.++.+++.|+++    ++  .+.+...
T Consensus        21 ~~~~~~~~~~~~~--------~~~vldiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~   89 (192)
T 1l3i_A           21 VRCLIMCLAEPGK--------NDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG   89 (192)
T ss_dssp             HHHHHHHHHCCCT--------TCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES
T ss_pred             HHHHHHHhcCCCC--------CCEEEEECCCCCHHHHHHHHhcC---EEEEEECCHHHHHHHHHHHHHcCCCcceEEEec
Confidence            3444555555432        25899999999999999988752   445577888888777663    33  2333222


Q ss_pred             cccCCCCCC-CcccceEecccc
Q 019228          307 ASKQLPYPS-LSFDMLHCARCG  327 (344)
Q Consensus       307 da~rLPFpD-~SFDlVhcs~~L  327 (344)
                      |... ++++ ++||+|++..++
T Consensus        90 d~~~-~~~~~~~~D~v~~~~~~  110 (192)
T 1l3i_A           90 DAPE-ALCKIPDIDIAVVGGSG  110 (192)
T ss_dssp             CHHH-HHTTSCCEEEEEESCCT
T ss_pred             CHHH-hcccCCCCCEEEECCch
Confidence            3333 4454 689999998765

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.29  E-value=4.6e-07  Score=81.14  Aligned_cols=78  Identities=19%  Similarity=0.210  Sum_probs=52.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccC-CC--CCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQ-LP--YPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~r-LP--FpD~SFDlVhcs~~  326 (344)
                      .+|||||||+|.++..|+++.-. ..+.+.|+++.+++.|+++    ++. +.+-..|+.. +|  |++++||.|++...
T Consensus        36 ~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~  114 (218)
T 3dxy_A           36 PVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFP  114 (218)
T ss_dssp             CEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESC
T ss_pred             CeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCC
Confidence            58999999999999999875211 1234467777777766543    443 3443345555 34  89999999998744


Q ss_pred             ccccCccc
Q 019228          327 GVDWDQKG  334 (344)
Q Consensus       327 Li~W~~~~  334 (344)
                       .+|....
T Consensus       115 -~p~~~~~  121 (218)
T 3dxy_A          115 -DPWHKAR  121 (218)
T ss_dssp             -CCCCSGG
T ss_pred             -CCccchh
Confidence             3776543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.28  E-value=7.3e-07  Score=79.55  Aligned_cols=68  Identities=15%  Similarity=0.173  Sum_probs=48.1

Q ss_pred             CeEEEECCccchhhHHHhh--CCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCC---CCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFS--KELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYP---SLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Lae--r~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFp---D~SFDlVhcs  324 (344)
                      .+|||||||+|.++..|+.  .+.   .+.+.|.++.++++|++.    +++ +.+...|+..++++   +++||+|+|.
T Consensus        72 ~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           72 NTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             CEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            5899999999999998884  332   344567788777776653    442 33333455678775   7899999997


Q ss_pred             c
Q 019228          325 R  325 (344)
Q Consensus       325 ~  325 (344)
                      .
T Consensus       149 ~  149 (240)
T 1xdz_A          149 A  149 (240)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.28  E-value=1e-06  Score=79.15  Aligned_cols=74  Identities=16%  Similarity=0.231  Sum_probs=46.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEccccccc-HHHHHHH---HH----cCCC-eEEeeccccCCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEAS-GSQVQLT---LE----RGLP-AMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~s-ea~Iq~A---~e----RGvp-a~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .+|||||||+|.++..|+++.- ...+.+.|++ +.+++.|   ++    .+++ +.+...+++.+|  +..||.|.|..
T Consensus        26 ~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~--~~~~d~v~~i~  102 (225)
T 3p2e_A           26 RVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLP--FELKNIADSIS  102 (225)
T ss_dssp             EEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCC--GGGTTCEEEEE
T ss_pred             CEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhh--hhccCeEEEEE
Confidence            5899999999999999985421 1234456777 5555554   33    3443 445455667775  34456666665


Q ss_pred             cccccC
Q 019228          326 CGVDWD  331 (344)
Q Consensus       326 ~Li~W~  331 (344)
                      ++.+|.
T Consensus       103 ~~~~~~  108 (225)
T 3p2e_A          103 ILFPWG  108 (225)
T ss_dssp             EESCCH
T ss_pred             EeCCCc
Confidence            555664

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.27  E-value=1.8e-06  Score=74.11  Aligned_cols=67  Identities=19%  Similarity=0.224  Sum_probs=46.8

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .+|||+|||+|.++..++..  +.   .+.+.|.++.+++.|.++    +++ +.+...|...++ ++++||+|+|..
T Consensus        67 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~  140 (207)
T 1jsx_A           67 ERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA  140 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec
Confidence            58999999999999988864  32   344567777777776653    443 333334555655 578999999863

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.27  E-value=1.4e-06  Score=81.82  Aligned_cols=81  Identities=16%  Similarity=0.304  Sum_probs=54.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEee
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGS  305 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~  305 (344)
                      ...++.|.+.+....+        .+|||||||+|.++..|++++.   .+.+.|+++.+++.|+++    +++ +.+-.
T Consensus        28 ~~i~~~i~~~~~~~~~--------~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~   96 (299)
T 2h1r_A           28 PGILDKIIYAAKIKSS--------DIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNLEVYE   96 (299)
T ss_dssp             HHHHHHHHHHHCCCTT--------CEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEC--
T ss_pred             HHHHHHHHHhcCCCCc--------CEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCceEEEE
Confidence            4457777777765332        5899999999999999998753   345567888888777654    332 22223


Q ss_pred             ccccCCCCCCCcccceEec
Q 019228          306 FASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs  324 (344)
                      .|+..+|++  +||+|+|.
T Consensus        97 ~D~~~~~~~--~~D~Vv~n  113 (299)
T 2h1r_A           97 GDAIKTVFP--KFDVCTAN  113 (299)
T ss_dssp             --CCSSCCC--CCSEEEEE
T ss_pred             CchhhCCcc--cCCEEEEc
Confidence            345566664  89999995

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.27  E-value=9.7e-07  Score=77.09  Aligned_cols=76  Identities=16%  Similarity=0.295  Sum_probs=51.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC--CCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP--YPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP--FpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..|+++.- ...+.+.|+++.+++.|+++    +++ +.+-..|+..+|  |++++||+|++... 
T Consensus        43 ~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~-  120 (214)
T 1yzh_A           43 PIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS-  120 (214)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-
T ss_pred             CeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC-
Confidence            5799999999999999887521 01334467777777766653    442 333334566788  89999999999854 


Q ss_pred             cccCc
Q 019228          328 VDWDQ  332 (344)
Q Consensus       328 i~W~~  332 (344)
                      .+|..
T Consensus       121 ~~~~~  125 (214)
T 1yzh_A          121 DPWPK  125 (214)
T ss_dssp             CCCCS
T ss_pred             CCccc
Confidence            35643

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.26  E-value=2.2e-06  Score=77.31  Aligned_cols=80  Identities=16%  Similarity=0.142  Sum_probs=55.4

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHc-----C--C-CeE
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER-----G--L-PAM  302 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eR-----G--v-pa~  302 (344)
                      +..+.+.+....+        .+|||+|||+|.++..|++.   +.   .+.+.|.++.+++.|+++     +  . .+.
T Consensus        88 ~~~i~~~~~~~~~--------~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~  156 (280)
T 1i9g_A           88 AAQIVHEGDIFPG--------ARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWR  156 (280)
T ss_dssp             HHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEE
T ss_pred             HHHHHHHcCCCCC--------CEEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEE
Confidence            3455555554332        58999999999999998874   32   334567788887777654     3  2 234


Q ss_pred             EeeccccCCCCCCCcccceEec
Q 019228          303 IGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       303 ~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      +...|...+++++++||+|++.
T Consensus       157 ~~~~d~~~~~~~~~~~D~v~~~  178 (280)
T 1i9g_A          157 LVVSDLADSELPDGSVDRAVLD  178 (280)
T ss_dssp             EECSCGGGCCCCTTCEEEEEEE
T ss_pred             EEECchHhcCCCCCceeEEEEC
Confidence            4444667788999999999984

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.26  E-value=1.3e-06  Score=75.58  Aligned_cols=89  Identities=16%  Similarity=0.155  Sum_probs=56.2

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeecc
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFA  307 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~ld  307 (344)
                      .+..+.+.+....        ..+|||||||+|.++..|++..-....+.+.|.++.+++.|+++    +++ +.+...|
T Consensus        65 ~~~~~~~~~~~~~--------~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d  136 (215)
T 2yxe_A           65 MVGMMCELLDLKP--------GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGD  136 (215)
T ss_dssp             HHHHHHHHTTCCT--------TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC
T ss_pred             HHHHHHHhhCCCC--------CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence            4555666665432        25899999999999998877520001334467778887777664    332 3332223


Q ss_pred             ccCCCCC-CCcccceEeccccccc
Q 019228          308 SKQLPYP-SLSFDMLHCARCGVDW  330 (344)
Q Consensus       308 a~rLPFp-D~SFDlVhcs~~Li~W  330 (344)
                      .. .+++ +++||+|++..++.+.
T Consensus       137 ~~-~~~~~~~~fD~v~~~~~~~~~  159 (215)
T 2yxe_A          137 GT-LGYEPLAPYDRIYTTAAGPKI  159 (215)
T ss_dssp             GG-GCCGGGCCEEEEEESSBBSSC
T ss_pred             cc-cCCCCCCCeeEEEECCchHHH
Confidence            32 3444 7899999999887544

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.25  E-value=1.6e-06  Score=82.92  Aligned_cols=73  Identities=25%  Similarity=0.262  Sum_probs=52.2

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----C----CCeEEeeccccCCCCCCCcccceEe
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----G----LPAMIGSFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----G----vpa~~~~lda~rLPFpD~SFDlVhc  323 (344)
                      ..+|||||||+|.++..|+++  ++   .+...|+ +.+++.|+++    +    +.+..++  .. .|+|+ .||+|+|
T Consensus       203 ~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d--~~-~~~p~-~~D~v~~  274 (369)
T 3gwz_A          203 AATAVDIGGGRGSLMAAVLDAFPGL---RGTLLER-PPVAEEARELLTGRGLADRCEILPGD--FF-ETIPD-GADVYLI  274 (369)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC--TT-TCCCS-SCSEEEE
T ss_pred             CcEEEEeCCCccHHHHHHHHHCCCC---eEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccC--CC-CCCCC-CceEEEh
Confidence            468999999999999999875  33   2334566 6666666643    3    3334444  33 57777 8999999


Q ss_pred             cccccccCccc
Q 019228          324 ARCGVDWDQKG  334 (344)
Q Consensus       324 s~~Li~W~~~~  334 (344)
                      ..++++|....
T Consensus       275 ~~vlh~~~d~~  285 (369)
T 3gwz_A          275 KHVLHDWDDDD  285 (369)
T ss_dssp             ESCGGGSCHHH
T ss_pred             hhhhccCCHHH
Confidence            99999997654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.25  E-value=2.8e-06  Score=82.60  Aligned_cols=89  Identities=16%  Similarity=0.153  Sum_probs=58.8

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC----C
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----P  300 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv----p  300 (344)
                      +.+.-...+.+.++...        ..+|||+|||+|.++..++++.- ...+.+.|.++.+++.|++.    ++    .
T Consensus       206 ~~d~~~~~ll~~l~~~~--------~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~  276 (375)
T 4dcm_A          206 GLDIGARFFMQHLPENL--------EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDR  276 (375)
T ss_dssp             SCCHHHHHHHHTCCCSC--------CSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGG
T ss_pred             cccHHHHHHHHhCcccC--------CCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCce
Confidence            55555556777776432        25899999999999999988631 01345567777777776653    32    2


Q ss_pred             eEEeeccccCCCCCCCcccceEecccc
Q 019228          301 AMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       301 a~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      +.+...|... ++++++||+|+|...+
T Consensus       277 v~~~~~D~~~-~~~~~~fD~Ii~nppf  302 (375)
T 4dcm_A          277 CEFMINNALS-GVEPFRFNAVLCNPPF  302 (375)
T ss_dssp             EEEEECSTTT-TCCTTCEEEEEECCCC
T ss_pred             EEEEechhhc-cCCCCCeeEEEECCCc
Confidence            3222233433 7889999999997655

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.24  E-value=2e-06  Score=81.28  Aligned_cols=86  Identities=21%  Similarity=0.286  Sum_probs=55.7

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CCC--eEEee
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GLP--AMIGS  305 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~  305 (344)
                      ++.+.+.+++.        ...+|||||||+|.++..|+++  +..   +...|+ +.+++.|+++    +++  +.+..
T Consensus       179 ~~~l~~~~~~~--------~~~~vLDvG~G~G~~~~~l~~~~p~~~---~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~  246 (359)
T 1x19_A          179 IQLLLEEAKLD--------GVKKMIDVGGGIGDISAAMLKHFPELD---STILNL-PGAIDLVNENAAEKGVADRMRGIA  246 (359)
T ss_dssp             HHHHHHHCCCT--------TCCEEEEESCTTCHHHHHHHHHCTTCE---EEEEEC-GGGHHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHhcCCC--------CCCEEEEECCcccHHHHHHHHHCCCCe---EEEEec-HHHHHHHHHHHHhcCCCCCEEEEe
Confidence            44555665543        2368999999999999998875  222   222344 4445555443    432  33333


Q ss_pred             ccccCCCCCCCcccceEecccccccCcc
Q 019228          306 FASKQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      .|...+|+++.  |+|++..++++|...
T Consensus       247 ~d~~~~~~~~~--D~v~~~~vlh~~~d~  272 (359)
T 1x19_A          247 VDIYKESYPEA--DAVLFCRILYSANEQ  272 (359)
T ss_dssp             CCTTTSCCCCC--SEEEEESCGGGSCHH
T ss_pred             CccccCCCCCC--CEEEEechhccCCHH
Confidence            45566788775  999999999999763

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.24  E-value=1.2e-06  Score=84.42  Aligned_cols=69  Identities=19%  Similarity=0.085  Sum_probs=50.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++..... ..+.+.|+++.+++.|+++    |+  .+.+...|+..+|+++++||+|+|.
T Consensus       219 ~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          219 GSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN  293 (373)
T ss_dssp             CCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred             CEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence            57999999999999998876421 0234567777777776654    54  3344445678899999999999995

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.24  E-value=9.7e-07  Score=77.22  Aligned_cols=70  Identities=11%  Similarity=0.014  Sum_probs=48.4

Q ss_pred             CeEEEECCc-cchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCCeEEeecccc-CCCCCCCcccceEecccc
Q 019228          255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASK-QLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCG-tGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~-rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||+||| +|.++..++++ +.   .+.+.|.++.+++.|+++    ++.+.+-..|+. -.++++++||+|+|.-..
T Consensus        57 ~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~  133 (230)
T 3evz_A           57 EVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY  133 (230)
T ss_dssp             CEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence            589999999 99999988876 33   345567777777777654    433333333332 347788999999987443

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.24  E-value=6.3e-07  Score=83.71  Aligned_cols=74  Identities=20%  Similarity=0.261  Sum_probs=51.1

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEecc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      ..+|||||||+|.++..++++  +..   +...|+ +.+++.|+++    ++.  +.+...|.. .|+|. +||+|+|..
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~  243 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLS---GTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSA  243 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCE---EEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEES
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCe---EEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEeh
Confidence            368999999999999998874  322   233466 6677766653    331  333223333 46666 899999999


Q ss_pred             cccccCcc
Q 019228          326 CGVDWDQK  333 (344)
Q Consensus       326 ~Li~W~~~  333 (344)
                      ++++|...
T Consensus       244 vlh~~~~~  251 (332)
T 3i53_A          244 VLHDWDDL  251 (332)
T ss_dssp             CGGGSCHH
T ss_pred             hhccCCHH
Confidence            99999865

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.24  E-value=6.8e-07  Score=79.34  Aligned_cols=88  Identities=15%  Similarity=0.163  Sum_probs=56.5

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeec
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSF  306 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~l  306 (344)
                      ..+..+.+.+....+        .+|||||||+|.++..|++..-  ..+.+.|.++.+++.|+++    +++ +.+...
T Consensus        78 ~~~~~~~~~l~~~~~--------~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~  147 (235)
T 1jg1_A           78 HMVAIMLEIANLKPG--------MNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILG  147 (235)
T ss_dssp             HHHHHHHHHHTCCTT--------CCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             HHHHHHHHhcCCCCC--------CEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEC
Confidence            345566666654332        5799999999999998887520  1233456777777776654    332 333333


Q ss_pred             cccCCCCCCCc-ccceEeccccccc
Q 019228          307 ASKQLPYPSLS-FDMLHCARCGVDW  330 (344)
Q Consensus       307 da~rLPFpD~S-FDlVhcs~~Li~W  330 (344)
                      |. ..+++++. ||+|++..++.++
T Consensus       148 d~-~~~~~~~~~fD~Ii~~~~~~~~  171 (235)
T 1jg1_A          148 DG-SKGFPPKAPYDVIIVTAGAPKI  171 (235)
T ss_dssp             CG-GGCCGGGCCEEEEEECSBBSSC
T ss_pred             Cc-ccCCCCCCCccEEEECCcHHHH
Confidence            33 46777765 9999998877444

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.24  E-value=1.3e-06  Score=75.89  Aligned_cols=67  Identities=21%  Similarity=0.262  Sum_probs=43.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHH----HHH----cCC-CeEEeeccccCCCCCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLE----RGL-PAMIGSFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~----A~e----RGv-pa~~~~lda~rLPFpD~SFDlVhc  323 (344)
                      .+|||||||+|.++..|+++.- ...+.+.|+++.|++.    |++    .++ .+.+...|...+||++++ |.|+.
T Consensus        29 ~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~  104 (218)
T 3mq2_A           29 DVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV  104 (218)
T ss_dssp             EEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred             CEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence            4799999999999999988620 1133445555555443    222    233 234444567889999988 88883

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.23  E-value=5.1e-06  Score=71.43  Aligned_cols=71  Identities=11%  Similarity=0.017  Sum_probs=49.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||+|||+|.++..+++.+..  .+.+.|.++.+++.|+++    ++.+.+-..|...+|   ++||+|++.-....+
T Consensus        51 ~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A           51 KVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSSS
T ss_pred             CEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCccc
Confidence            58999999999999999887432  345578888888887765    233433333455654   489999998655333

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.23  E-value=1.1e-06  Score=79.61  Aligned_cols=75  Identities=19%  Similarity=0.148  Sum_probs=48.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----------CCC-eEEeeccccC-CC--CCCCcccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----------GLP-AMIGSFASKQ-LP--YPSLSFDM  320 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----------Gvp-a~~~~lda~r-LP--FpD~SFDl  320 (344)
                      .+|||||||+|.++..|+++.-. ..+.+.|+++.+++.|.++          ++. +.+...|+.. ||  |++++||.
T Consensus        48 ~~vLDiGcG~G~~~~~la~~~p~-~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~  126 (235)
T 3ckk_A           48 VEFADIGCGYGGLLVELSPLFPD-TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK  126 (235)
T ss_dssp             EEEEEETCTTCHHHHHHGGGSTT-SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred             CeEEEEccCCcHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence            47999999999999999876210 1334567777777766532          332 3333345565 78  89999999


Q ss_pred             eEecccccccC
Q 019228          321 LHCARCGVDWD  331 (344)
Q Consensus       321 Vhcs~~Li~W~  331 (344)
                      |++... .+|.
T Consensus       127 v~~~~~-dp~~  136 (235)
T 3ckk_A          127 MFFLFP-DPHF  136 (235)
T ss_dssp             EEEESC-C---
T ss_pred             EEEeCC-Cchh
Confidence            987543 3564

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.21  E-value=2e-06  Score=75.25  Aligned_cols=74  Identities=12%  Similarity=0.073  Sum_probs=49.4

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC------CeEEeeccccCCCCCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL------PAMIGSFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv------pa~~~~lda~rLPFpD~SFDlVhc  323 (344)
                      .+|||||||+|.++..|++. +.. ..+.+.|.++.+++.|+++    ++      .+.+...|....++++++||+|++
T Consensus        79 ~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~  157 (226)
T 1i1n_A           79 AKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHV  157 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred             CEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEEE
Confidence            58999999999999988764 210 1334467777777766543    21      233333455566677889999999


Q ss_pred             cccccc
Q 019228          324 ARCGVD  329 (344)
Q Consensus       324 s~~Li~  329 (344)
                      ...+.+
T Consensus       158 ~~~~~~  163 (226)
T 1i1n_A          158 GAAAPV  163 (226)
T ss_dssp             CSBBSS
T ss_pred             CCchHH
Confidence            876643

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.21  E-value=1.9e-07  Score=79.47  Aligned_cols=86  Identities=8%  Similarity=0.078  Sum_probs=47.1

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEee
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGS  305 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~  305 (344)
                      .+.+++.+.+.+....       ...+|||+|||+|.++..++++.. ...+.+.|+++.+++.|+++    ++.+.+..
T Consensus        14 ~~~~~~~~~~~l~~~~-------~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~   85 (215)
T 4dzr_A           14 TEVLVEEAIRFLKRMP-------SGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAA   85 (215)
T ss_dssp             HHHHHHHHHHHHTTCC-------TTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCH
T ss_pred             HHHHHHHHHHHhhhcC-------CCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEE
Confidence            3556677777765311       235899999999999999988621 12445567777777766654    21122222


Q ss_pred             ccccCCCCCC-----CcccceEec
Q 019228          306 FASKQLPYPS-----LSFDMLHCA  324 (344)
Q Consensus       306 lda~rLPFpD-----~SFDlVhcs  324 (344)
                      .|... ++++     ++||+|+|.
T Consensus        86 ~d~~~-~~~~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           86 ADGIE-WLIERAERGRPWHAIVSN  108 (215)
T ss_dssp             HHHHH-HHHHHHHTTCCBSEEEEC
T ss_pred             cchHh-hhhhhhhccCcccEEEEC
Confidence            23334 7777     999999995

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.21  E-value=3.4e-06  Score=75.05  Aligned_cols=79  Identities=19%  Similarity=0.187  Sum_probs=54.4

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHc----CCC--eEEe
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER----GLP--AMIG  304 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~  304 (344)
                      +..+.+.+....        ..+|||+|||+|.++..+++.   +.   .+.+.|.++.+++.|+++    +++  +.+.
T Consensus        82 ~~~i~~~~~~~~--------~~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~  150 (255)
T 3mb5_A           82 AALIVAYAGISP--------GDFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIK  150 (255)
T ss_dssp             HHHHHHHTTCCT--------TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEE
T ss_pred             HHHHHHhhCCCC--------CCEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEE
Confidence            345556655433        258999999999999998876   33   344568888888877765    443  3333


Q ss_pred             eccccCCCCCCCcccceEec
Q 019228          305 SFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs  324 (344)
                      ..|.. -++++++||+|++.
T Consensus       151 ~~d~~-~~~~~~~~D~v~~~  169 (255)
T 3mb5_A          151 LKDIY-EGIEEENVDHVILD  169 (255)
T ss_dssp             CSCGG-GCCCCCSEEEEEEC
T ss_pred             ECchh-hccCCCCcCEEEEC
Confidence            33444 45889999999984

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.21  E-value=4.2e-06  Score=82.37  Aligned_cols=98  Identities=16%  Similarity=0.257  Sum_probs=63.9

Q ss_pred             cceeeecCCCcccc----chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHH
Q 019228          215 EEQISFRSASLIFD----GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ  290 (344)
Q Consensus       215 g~~~~FpGggt~F~----g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~  290 (344)
                      |-.+.|+. +.||.    ..+..++.+.+.+....        ..+|||+|||+|.++..|+++..   .+.+.|.++.+
T Consensus       253 g~~~~~~~-~~f~q~n~~~~e~l~~~~~~~l~~~~--------~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~a  320 (433)
T 1uwv_A          253 GLRLTFSP-RDFIQVNAGVNQKMVARALEWLDVQP--------EDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPAL  320 (433)
T ss_dssp             TEEEECCS-SSCCCSBHHHHHHHHHHHHHHHTCCT--------TCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHH
T ss_pred             CEEEEECc-ccccccCHHHHHHHHHHHHHhhcCCC--------CCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHH
Confidence            44455543 34553    34556777777765432        25899999999999999998743   34456777777


Q ss_pred             HHHHHHc----CCC-eEEeeccccC----CCCCCCcccceEec
Q 019228          291 VQLTLER----GLP-AMIGSFASKQ----LPYPSLSFDMLHCA  324 (344)
Q Consensus       291 Iq~A~eR----Gvp-a~~~~lda~r----LPFpD~SFDlVhcs  324 (344)
                      ++.|++.    ++. +.+-..|+..    +|+++++||+|++.
T Consensus       321 l~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          321 VEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             HHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             HHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            7776643    442 3333333444    67888999999984

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.21  E-value=2.7e-06  Score=75.96  Aligned_cols=70  Identities=17%  Similarity=0.176  Sum_probs=46.6

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCC---CCC---CCcccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQL---PYP---SLSFDM  320 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rL---PFp---D~SFDl  320 (344)
                      .+|||+|||+|.++..|+++  +.   .+.+.|+++.+++.|+++    ++.  +.+...|+..+   +++   +++||+
T Consensus        67 ~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           67 RRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            58999999999999888765  22   344567777777776653    442  33333344442   566   379999


Q ss_pred             eEecccc
Q 019228          321 LHCARCG  327 (344)
Q Consensus       321 Vhcs~~L  327 (344)
                      |+|.-..
T Consensus       144 i~~npp~  150 (254)
T 2h00_A          144 CMCNPPF  150 (254)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9997443

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.20  E-value=1.8e-06  Score=86.84  Aligned_cols=91  Identities=19%  Similarity=0.178  Sum_probs=56.4

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC--eEEe
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMIG  304 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp--a~~~  304 (344)
                      +.|.+.|.+.+....        ..+|||||||+|.++..+++.+..  .+.+.|.++ +++.|++    .++.  +.+-
T Consensus       144 ~~~~~~il~~l~~~~--------~~~VLDiGcGtG~la~~la~~~~~--~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~  212 (480)
T 3b3j_A          144 GTYQRAILQNHTDFK--------DKIVLDVGCGSGILSFFAAQAGAR--KIYAVEAST-MAQHAEVLVKSNNLTDRIVVI  212 (480)
T ss_dssp             HHHHHHHHHTGGGTT--------TCEEEEESCSTTHHHHHHHHTTCS--EEEEEECHH-HHHHHHHHHHHTTCTTTEEEE
T ss_pred             HHHHHHHHHhhhhcC--------CCEEEEecCcccHHHHHHHHcCCC--EEEEEEcHH-HHHHHHHHHHHcCCCCcEEEE
Confidence            445555555554322        258999999999999998886421  233345555 5555544    2442  3333


Q ss_pred             eccccCCCCCCCcccceEecccccccCcc
Q 019228          305 SFASKQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      ..|...++++ +.||+|+|...+++|...
T Consensus       213 ~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e  240 (480)
T 3b3j_A          213 PGKVEEVSLP-EQVDIIISEPMGYMLFNE  240 (480)
T ss_dssp             ESCTTTCCCS-SCEEEEECCCCHHHHTCH
T ss_pred             ECchhhCccC-CCeEEEEEeCchHhcCcH
Confidence            3455667776 589999998666666543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.19  E-value=1.6e-06  Score=80.28  Aligned_cols=91  Identities=8%  Similarity=-0.039  Sum_probs=56.6

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCcc---chhhHHHhhC--CceEEEcccccccHHHHHHHHHcC-----CC
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGY---GSFGAHLFSK--ELLTMCIANYEASGSQVQLTLERG-----LP  300 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGt---Gsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eRG-----vp  300 (344)
                      ..+++.+.+.+...       .+.++|||||||+   |.++..+.+.  +.   .+...|+++.|++.|+++-     +.
T Consensus        62 ~~~~~~~~~~l~~~-------~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~---~v~~vD~sp~~l~~Ar~~~~~~~~v~  131 (274)
T 2qe6_A           62 RKVLVRGVRFLAGE-------AGISQFLDLGSGLPTVQNTHEVAQSVNPDA---RVVYVDIDPMVLTHGRALLAKDPNTA  131 (274)
T ss_dssp             HHHHHHHHHHHHTT-------TCCCEEEEETCCSCCSSCHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHTTCTTEE
T ss_pred             hHHHHHHHHHHhhc-------cCCCEEEEECCCCCCCChHHHHHHHhCCCC---EEEEEECChHHHHHHHHhcCCCCCeE
Confidence            34455555555421       1357899999999   9887666543  22   3445678888888877651     33


Q ss_pred             eEEeeccccCC-----------CCCCCcccceEecccccccCcc
Q 019228          301 AMIGSFASKQL-----------PYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       301 a~~~~lda~rL-----------PFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      ++.+++  ..+           .|+.++||+|++..+++++...
T Consensus       132 ~~~~D~--~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~  173 (274)
T 2qe6_A          132 VFTADV--RDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPD  173 (274)
T ss_dssp             EEECCT--TCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTT
T ss_pred             EEEeeC--CCchhhhccchhhccCCCCCCEEEEEechhhhCCcH
Confidence            344543  221           1333589999999888555543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.19  E-value=1.9e-06  Score=75.39  Aligned_cols=74  Identities=19%  Similarity=0.170  Sum_probs=49.4

Q ss_pred             CeEEEECCccchhhHHHhhCCc----eEEEcccccccHHHHHHHHHc----C-----C-CeEEeeccccCCC----CCCC
Q 019228          255 RTILDIGCGYGSFGAHLFSKEL----LTMCIANYEASGSQVQLTLER----G-----L-PAMIGSFASKQLP----YPSL  316 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V----~~~sIa~~D~sea~Iq~A~eR----G-----v-pa~~~~lda~rLP----FpD~  316 (344)
                      .+|||||||+|.++..|++..-    ....+.+.|.++.+++.|+++    +     . .+.+...|....+    ++++
T Consensus        82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  161 (227)
T 2pbf_A           82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELG  161 (227)
T ss_dssp             CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHC
T ss_pred             CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccCC
Confidence            5899999999999998877421    001334467777777776654    3     1 2333334455555    6778


Q ss_pred             cccceEeccccc
Q 019228          317 SFDMLHCARCGV  328 (344)
Q Consensus       317 SFDlVhcs~~Li  328 (344)
                      +||+|++...+.
T Consensus       162 ~fD~I~~~~~~~  173 (227)
T 2pbf_A          162 LFDAIHVGASAS  173 (227)
T ss_dssp             CEEEEEECSBBS
T ss_pred             CcCEEEECCchH
Confidence            999999987764

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.19  E-value=1.1e-06  Score=79.98  Aligned_cols=68  Identities=15%  Similarity=0.196  Sum_probs=41.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEe------eccccCC---CCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG------SFASKQL---PYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~------~lda~rL---PFpD~SFDlVhcs  324 (344)
                      .+|||||||||.++..|++++..  .+.+.|+++.|++.|+++.......      .+....+   +|++.+||+|+++
T Consensus        39 ~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~  115 (232)
T 3opn_A           39 KTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS  115 (232)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred             CEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence            58999999999999999987531  2334555656666665543222110      0111222   3566789988876

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.19  E-value=1.8e-06  Score=81.11  Aligned_cols=72  Identities=25%  Similarity=0.459  Sum_probs=47.4

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CC----CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gv----pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||||||+|.++..|+++  ++.++.   .|+ +.+++.|+++    ++    .+..+++  .. ++|.+ ||+|++.
T Consensus       185 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~---~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~-~~~~~-~D~v~~~  256 (360)
T 1tw3_A          185 RHVLDVGGGKGGFAAAIARRAPHVSATV---LEM-AGTVDTARSYLKDEGLSDRVDVVEGDF--FE-PLPRK-ADAIILS  256 (360)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEE---EEC-TTHHHHHHHHHHHTTCTTTEEEEECCT--TS-CCSSC-EEEEEEE
T ss_pred             cEEEEeCCcCcHHHHHHHHhCCCCEEEE---ecC-HHHHHHHHHHHHhcCCCCceEEEeCCC--CC-CCCCC-ccEEEEc
Confidence            58999999999999988875  333322   344 4455555442    33    3344443  22 45554 9999999


Q ss_pred             ccccccCccc
Q 019228          325 RCGVDWDQKG  334 (344)
Q Consensus       325 ~~Li~W~~~~  334 (344)
                      .++++|...+
T Consensus       257 ~vl~~~~~~~  266 (360)
T 1tw3_A          257 FVLLNWPDHD  266 (360)
T ss_dssp             SCGGGSCHHH
T ss_pred             ccccCCCHHH
Confidence            9999997654

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.18  E-value=3.5e-06  Score=78.07  Aligned_cols=80  Identities=18%  Similarity=0.169  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---CCeEEeecc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA  307 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~ld  307 (344)
                      ...++.|.+.+....+        .+|||||||+|.++..|++++.   .+.+.|+++.+++.++++-   -.+.+-..|
T Consensus        15 ~~i~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~~~~v~~i~~D   83 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQKT--------DTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQQKNITIYQND   83 (255)
T ss_dssp             HHHHHHHHHHHCCCTT--------CEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTTCTTEEEEESC
T ss_pred             HHHHHHHHHhcCCCCc--------CEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhhCCCcEEEEcc
Confidence            4567778887765433        5899999999999999999853   3455678888888777651   223333346


Q ss_pred             ccCCCCCC----Ccccce
Q 019228          308 SKQLPYPS----LSFDML  321 (344)
Q Consensus       308 a~rLPFpD----~SFDlV  321 (344)
                      +..++|++    ..||+|
T Consensus        84 ~~~~~~~~~~~~~~~~vv  101 (255)
T 3tqs_A           84 ALQFDFSSVKTDKPLRVV  101 (255)
T ss_dssp             TTTCCGGGSCCSSCEEEE
T ss_pred             hHhCCHHHhccCCCeEEE
Confidence            77888865    578843

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.18  E-value=6.1e-06  Score=71.16  Aligned_cols=84  Identities=12%  Similarity=-0.005  Sum_probs=53.7

Q ss_pred             HHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeecccc
Q 019228          235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASK  309 (344)
Q Consensus       235 d~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~  309 (344)
                      ..+.+.+....        ..+|||+|||+|.++..++++.- ...+.+.|.++.+++.|+++    +++ +.+...|..
T Consensus        30 ~~~l~~l~~~~--------~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~  100 (204)
T 3e05_A           30 AVTLSKLRLQD--------DLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAP  100 (204)
T ss_dssp             HHHHHHTTCCT--------TCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTT
T ss_pred             HHHHHHcCCCC--------CCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChh
Confidence            44555555433        25899999999999999987641 01344567888887777654    332 323223343


Q ss_pred             CCCCCCCcccceEecccc
Q 019228          310 QLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       310 rLPFpD~SFDlVhcs~~L  327 (344)
                      ......++||+|++..++
T Consensus       101 ~~~~~~~~~D~i~~~~~~  118 (204)
T 3e05_A          101 EGLDDLPDPDRVFIGGSG  118 (204)
T ss_dssp             TTCTTSCCCSEEEESCCT
T ss_pred             hhhhcCCCCCEEEECCCC
Confidence            443344789999998654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.18  E-value=2.7e-06  Score=77.65  Aligned_cols=65  Identities=11%  Similarity=0.205  Sum_probs=47.7

Q ss_pred             CeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHc-----CCC-eEEeeccccCCCCCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER-----GLP-AMIGSFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eR-----Gvp-a~~~~lda~rLPFpD~SFDlVhc  323 (344)
                      .+|||+|||+|.++..|++.   +.   .+.+.|.++.+++.|+++     |.+ +.+...|... ++++++||+|++
T Consensus       112 ~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~  185 (275)
T 1yb2_A          112 MDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIA  185 (275)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEE
T ss_pred             CEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCCCccEEEE
Confidence            58999999999999998875   33   344568888888777664     432 3343344545 788899999998

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.17  E-value=2.3e-06  Score=82.06  Aligned_cols=68  Identities=19%  Similarity=0.170  Sum_probs=46.6

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CC-CeEEeeccccCCCCCCCcccceEeccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gv-pa~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      ..+|||||||+|.+++.++.+  +.   .+.+.|.++++++.|+++    |+ .+.+...|+..+|  +++||+|++...
T Consensus       123 g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~  197 (298)
T 3fpf_A          123 GERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL  197 (298)
T ss_dssp             TCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT
T ss_pred             cCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC
Confidence            368999999999887655432  32   445578888888887765    54 2333334555665  899999998643

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.15  E-value=2.5e-06  Score=75.73  Aligned_cols=66  Identities=18%  Similarity=0.134  Sum_probs=42.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHH----HHHHHc-CCCeEEeeccccC----CCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLER-GLPAMIGSFASKQ----LPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~I----q~A~eR-Gvpa~~~~lda~r----LPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..|++..-. ..+.+.|+++.++    +.|.++ ++....+  |+..    +|++ ++||+|+|.
T Consensus        59 ~~VLDlGcGtG~~~~~la~~~~~-~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~--d~~~~~~~~~~~-~~fD~V~~~  133 (210)
T 1nt2_A           59 ERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERNNIIPLLF--DASKPWKYSGIV-EKVDLIYQD  133 (210)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCSSEEEECS--CTTCGGGTTTTC-CCEEEEEEC
T ss_pred             CEEEEECCcCCHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHhcCCCeEEEEc--CCCCchhhcccc-cceeEEEEe
Confidence            58999999999999988774201 1344567777543    444444 2222333  4444    3665 899999997

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.14  E-value=1.7e-06  Score=80.54  Aligned_cols=75  Identities=17%  Similarity=0.194  Sum_probs=48.2

Q ss_pred             CeEEEECCccchhhHHHhhC----CceEEEcccccccHHHHHHHHH---cCCCeEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLE---RGLPAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer----~V~~~sIa~~D~sea~Iq~A~e---RGvpa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..++++    .++++++ +..+..+.......   ..+.+..+++  .. |+| ++||+|+|..++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~-~~~-~~~D~v~~~~vl  243 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDM--LQ-EVP-SNGDIYLLSRII  243 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCT--TT-CCC-SSCSEEEEESCG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCC--CC-CCC-CCCCEEEEchhc
Confidence            68999999999999988865    2445555 44433332111110   1233444543  33 666 689999999999


Q ss_pred             cccCccc
Q 019228          328 VDWDQKG  334 (344)
Q Consensus       328 i~W~~~~  334 (344)
                      ++|...+
T Consensus       244 ~~~~~~~  250 (334)
T 2ip2_A          244 GDLDEAA  250 (334)
T ss_dssp             GGCCHHH
T ss_pred             cCCCHHH
Confidence            9997654

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.14  E-value=2.4e-06  Score=80.97  Aligned_cols=89  Identities=16%  Similarity=0.204  Sum_probs=58.6

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEe
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIG  304 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~  304 (344)
                      ..+...+.+.+.++...        ..+|||+|||+|.++..+++++.. ..+.+.|+++.+++.|+++    ++...+.
T Consensus       180 ~~d~~~~~ll~~l~~~~--------~~~VLDlGcG~G~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~  250 (343)
T 2pjd_A          180 GLDVGSQLLLSTLTPHT--------KGKVLDVGCGAGVLSVAFARHSPK-IRLTLCDVSAPAVEASRATLAANGVEGEVF  250 (343)
T ss_dssp             SCCHHHHHHHHHSCTTC--------CSBCCBTTCTTSHHHHHHHHHCTT-CBCEEEESBHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCcHHHHHHHHhcCcCC--------CCeEEEecCccCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCEEE
Confidence            44555667777774322        247999999999999998875311 1344567777777776654    4443333


Q ss_pred             eccccCCCCCCCcccceEeccccc
Q 019228          305 SFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      ..|  -+++++++||+|+|+..++
T Consensus       251 ~~d--~~~~~~~~fD~Iv~~~~~~  272 (343)
T 2pjd_A          251 ASN--VFSEVKGRFDMIISNPPFH  272 (343)
T ss_dssp             ECS--TTTTCCSCEEEEEECCCCC
T ss_pred             Ecc--ccccccCCeeEEEECCCcc
Confidence            333  3456688999999987663

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.14  E-value=3.4e-06  Score=76.99  Aligned_cols=69  Identities=16%  Similarity=0.162  Sum_probs=49.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-------CC--eEEeeccccCC-------CCCCCcc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-------LP--AMIGSFASKQL-------PYPSLSF  318 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-------vp--a~~~~lda~rL-------PFpD~SF  318 (344)
                      .+|||+|||+|.++..|+++.- ...+.+.|+++.+++.|++.-       +.  +.+-..|...+       +|++++|
T Consensus        38 ~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~f  116 (260)
T 2ozv_A           38 CRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHF  116 (260)
T ss_dssp             EEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTCE
T ss_pred             CEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCCc
Confidence            4899999999999999888631 135566788888888887642       21  33333345555       4788999


Q ss_pred             cceEec
Q 019228          319 DMLHCA  324 (344)
Q Consensus       319 DlVhcs  324 (344)
                      |+|+|+
T Consensus       117 D~Vv~n  122 (260)
T 2ozv_A          117 HHVIMN  122 (260)
T ss_dssp             EEEEEC
T ss_pred             CEEEEC
Confidence            999997

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.14  E-value=1.6e-06  Score=77.30  Aligned_cols=69  Identities=17%  Similarity=0.265  Sum_probs=47.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC----CeEEeeccccCCC-CCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLP-YPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv----pa~~~~lda~rLP-FpD~SFDlVhcs~  325 (344)
                      .+|||||||+|.++..|++..- ...+.+.|.++.+++.|+++    ++    .+..+++ .+.+| +.+++||+|++..
T Consensus        73 ~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~~fD~V~~~~  150 (232)
T 3ntv_A           73 KNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNA-LEQFENVNDKVYDMIFIDA  150 (232)
T ss_dssp             CEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCG-GGCHHHHTTSCEEEEEEET
T ss_pred             CEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH-HHHHHhhccCCccEEEEcC
Confidence            5899999999999999988311 12445567777777777653    43    2344443 13356 6689999999864

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.13  E-value=3.9e-06  Score=76.31  Aligned_cols=81  Identities=19%  Similarity=0.221  Sum_probs=55.8

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---CCeEEeecc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA  307 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~ld  307 (344)
                      ...++.|.+.+....        ..+|||||||+|.++..|++++.   .+.+.|.++.+++.+.++-   -.+.+-..|
T Consensus        16 ~~~~~~i~~~~~~~~--------~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D   84 (244)
T 1qam_A           16 KHNIDKIMTNIRLNE--------HDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVDHDNFQVLNKD   84 (244)
T ss_dssp             HHHHHHHHTTCCCCT--------TCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTTCCSEEEECCC
T ss_pred             HHHHHHHHHhCCCCC--------CCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhccCCCeEEEECh
Confidence            455667776665432        25899999999999999998753   3455788888888887752   123343446


Q ss_pred             ccCCCCCC-CcccceEe
Q 019228          308 SKQLPYPS-LSFDMLHC  323 (344)
Q Consensus       308 a~rLPFpD-~SFDlVhc  323 (344)
                      +.++||++ ..|+ |++
T Consensus        85 ~~~~~~~~~~~~~-vv~  100 (244)
T 1qam_A           85 ILQFKFPKNQSYK-IFG  100 (244)
T ss_dssp             GGGCCCCSSCCCE-EEE
T ss_pred             HHhCCcccCCCeE-EEE
Confidence            77889985 5664 443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.11  E-value=4.7e-06  Score=78.04  Aligned_cols=76  Identities=14%  Similarity=0.225  Sum_probs=47.9

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHH----cCCC--eEEeeccccCCC-CCCCcccceEec
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLE----RGLP--AMIGSFASKQLP-YPSLSFDMLHCA  324 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~e----RGvp--a~~~~lda~rLP-FpD~SFDlVhcs  324 (344)
                      ..+|||||||+|.++..++++  ++.+   ...|+ +.+++.|++    .++.  +.+...|....+ ++.+.||+|+|.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~---~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~  255 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTG---QIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLN  255 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEE---EEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeE---EEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEe
Confidence            468999999999999998875  3222   22333 233444433    2432  333333444554 355679999999


Q ss_pred             ccccccCcc
Q 019228          325 RCGVDWDQK  333 (344)
Q Consensus       325 ~~Li~W~~~  333 (344)
                      .++++|...
T Consensus       256 ~vlh~~~~~  264 (352)
T 3mcz_A          256 DCLHYFDAR  264 (352)
T ss_dssp             SCGGGSCHH
T ss_pred             cccccCCHH
Confidence            999999764

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.11  E-value=4.2e-06  Score=68.15  Aligned_cols=62  Identities=8%  Similarity=0.128  Sum_probs=41.6

Q ss_pred             CeEEEECCccchhhHHHhhC-----CceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCC--------CCCCcccce
Q 019228          255 RTILDIGCGYGSFGAHLFSK-----ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDML  321 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-----~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLP--------FpD~SFDlV  321 (344)
                      .+|||+|||+|.++..++++     .++++++.+      +++.   ..+.+..  .|...+|        +++++||+|
T Consensus        24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~------~~~~---~~~~~~~--~d~~~~~~~~~~~~~~~~~~~D~i   92 (180)
T 1ej0_A           24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP------MDPI---VGVDFLQ--GDFRDELVMKALLERVGDSKVQVV   92 (180)
T ss_dssp             CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC------CCCC---TTEEEEE--SCTTSHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc------cccc---CcEEEEE--cccccchhhhhhhccCCCCceeEE
Confidence            58999999999999888765     234444433      2211   2233333  3556677        889999999


Q ss_pred             Eecccc
Q 019228          322 HCARCG  327 (344)
Q Consensus       322 hcs~~L  327 (344)
                      ++...+
T Consensus        93 ~~~~~~   98 (180)
T 1ej0_A           93 MSDMAP   98 (180)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            997665

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.11  E-value=2.1e-06  Score=79.27  Aligned_cols=93  Identities=11%  Similarity=0.045  Sum_probs=54.2

Q ss_pred             cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccc-cHHHHHHHHHc---------
Q 019228          228 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA-SGSQVQLTLER---------  297 (344)
Q Consensus       228 ~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~-sea~Iq~A~eR---------  297 (344)
                      .+.....+.+.+......        ..+|||+|||+|.++..++..+..  .+.+.|+ ++.+++.|++.         
T Consensus        62 ~~~~~l~~~l~~~~~~~~--------~~~vLDlG~G~G~~~~~~a~~~~~--~v~~~D~s~~~~~~~a~~n~~~N~~~~~  131 (281)
T 3bzb_A           62 SGARALADTLCWQPELIA--------GKTVCELGAGAGLVSIVAFLAGAD--QVVATDYPDPEILNSLESNIREHTANSC  131 (281)
T ss_dssp             CHHHHHHHHHHHCGGGTT--------TCEEEETTCTTSHHHHHHHHTTCS--EEEEEECSCHHHHHHHHHHHHTTCC---
T ss_pred             cHHHHHHHHHHhcchhcC--------CCeEEEecccccHHHHHHHHcCCC--EEEEEeCCCHHHHHHHHHHHHHhhhhhc
Confidence            344445555555443221        258999999999999988886531  3344677 67776666543         


Q ss_pred             CC------CeEEeeccc----cCCCC--CCCcccceEeccccccc
Q 019228          298 GL------PAMIGSFAS----KQLPY--PSLSFDMLHCARCGVDW  330 (344)
Q Consensus       298 Gv------pa~~~~lda----~rLPF--pD~SFDlVhcs~~Li~W  330 (344)
                      ++      .+.+..++.    ..++.  ++++||+|+++.++++.
T Consensus       132 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~  176 (281)
T 3bzb_A          132 SSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH  176 (281)
T ss_dssp             -------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCG
T ss_pred             ccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccCh
Confidence            11      122211111    11211  47899999999888654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.10  E-value=2.1e-06  Score=78.45  Aligned_cols=69  Identities=22%  Similarity=0.155  Sum_probs=48.1

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCC---CCcccceEe
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYP---SLSFDMLHC  323 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFp---D~SFDlVhc  323 (344)
                      ..+|||||||+|.++..|+..  +.   .+.+.|.++.++++|++.    ++. +.+-..+++.+++.   +++||+|+|
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRPEL---ELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence            358999999999999888764  22   344567777777777653    543 33333456667654   589999999


Q ss_pred             cc
Q 019228          324 AR  325 (344)
Q Consensus       324 s~  325 (344)
                      ..
T Consensus       158 ~a  159 (249)
T 3g89_A          158 RA  159 (249)
T ss_dssp             ES
T ss_pred             CC
Confidence            64

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.08  E-value=2.4e-06  Score=75.59  Aligned_cols=69  Identities=14%  Similarity=0.158  Sum_probs=44.8

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHH----HHHHHHc-CCCeEEeeccccC---CCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQ----VQLTLER-GLPAMIGSFASKQ---LPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~----Iq~A~eR-Gvpa~~~~lda~r---LPFpD~SFDlVhcs~  325 (344)
                      .+|||+|||+|.++..|+++ +.. ..+.+.|+++.+    ++.|.++ ++.+..++  ...   +|+++++||+|+|..
T Consensus        79 ~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d--~~~~~~~~~~~~~~D~V~~~~  155 (233)
T 2ipx_A           79 AKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKKRTNIIPVIED--ARHPHKYRMLIAMVDVIFADV  155 (233)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHHCTTEEEECSC--TTCGGGGGGGCCCEEEEEECC
T ss_pred             CEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhccCCeEEEEcc--cCChhhhcccCCcEEEEEEcC
Confidence            58999999999999998875 100 123445777553    4445443 23333443  444   678899999999954


Q ss_pred             c
Q 019228          326 C  326 (344)
Q Consensus       326 ~  326 (344)
                      .
T Consensus       156 ~  156 (233)
T 2ipx_A          156 A  156 (233)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.08  E-value=3.7e-06  Score=73.90  Aligned_cols=71  Identities=15%  Similarity=0.191  Sum_probs=47.2

Q ss_pred             CeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHc----CC----CeEEeeccccCCCCCC-----Ccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPS-----LSF  318 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eR----Gv----pa~~~~lda~rLPFpD-----~SF  318 (344)
                      .+|||||||+|.++..|++.   +.   .+.+.|.++.+++.|+++    ++    .+..+++. +-+|...     ++|
T Consensus        60 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           60 SLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ-DLIPQLKKKYDVDTL  135 (221)
T ss_dssp             SEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH-HHGGGTTTTSCCCCC
T ss_pred             CEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHH-HHHHHHHHhcCCCce
Confidence            58999999999999999874   32   344567777787777653    43    23444321 2244433     799


Q ss_pred             cceEecccccc
Q 019228          319 DMLHCARCGVD  329 (344)
Q Consensus       319 DlVhcs~~Li~  329 (344)
                      |+|++.....+
T Consensus       136 D~V~~d~~~~~  146 (221)
T 3u81_A          136 DMVFLDHWKDR  146 (221)
T ss_dssp             SEEEECSCGGG
T ss_pred             EEEEEcCCccc
Confidence            99998764433

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.07  E-value=3.4e-06  Score=76.71  Aligned_cols=65  Identities=18%  Similarity=0.220  Sum_probs=43.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      .+|||+|||+|.++..+++.+.   .+.+.|+++.+++.|+++    ++.  +..+++  .. ++++++||+|+++.
T Consensus       122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~--~~-~~~~~~fD~Vv~n~  192 (254)
T 2nxc_A          122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL--EA-ALPFGPFDLLVANL  192 (254)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCH--HH-HGGGCCEEEEEEEC
T ss_pred             CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECCh--hh-cCcCCCCCEEEECC
Confidence            5899999999999999888754   334456666666555543    443  333332  22 36688999999964

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.06  E-value=2.4e-06  Score=81.46  Aligned_cols=72  Identities=18%  Similarity=0.261  Sum_probs=50.9

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc-CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      ..+|||||||+|.++..|+++  ++.   +...|+ +.+++.|++. ++.+..++  ... |+|+  ||+|++..++++|
T Consensus       210 ~~~vLDvG~G~G~~~~~l~~~~~~~~---~~~~D~-~~~~~~a~~~~~v~~~~~d--~~~-~~~~--~D~v~~~~~lh~~  280 (372)
T 1fp1_D          210 ISTLVDVGGGSGRNLELIISKYPLIK---GINFDL-PQVIENAPPLSGIEHVGGD--MFA-SVPQ--GDAMILKAVCHNW  280 (372)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCE---EEEEEC-HHHHTTCCCCTTEEEEECC--TTT-CCCC--EEEEEEESSGGGS
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCe---EEEeCh-HHHHHhhhhcCCCEEEeCC--ccc-CCCC--CCEEEEecccccC
Confidence            368999999999999999876  333   234566 6677666442 23344454  334 7776  9999999999999


Q ss_pred             Cccc
Q 019228          331 DQKG  334 (344)
Q Consensus       331 ~~~~  334 (344)
                      ...+
T Consensus       281 ~d~~  284 (372)
T 1fp1_D          281 SDEK  284 (372)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            7654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.06  E-value=6.4e-06  Score=72.43  Aligned_cols=67  Identities=18%  Similarity=0.164  Sum_probs=47.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..+++++.   .+...|.++.+++.|+++    ++  .+.+...|.....+++++||+|++.
T Consensus        93 ~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  165 (248)
T 2yvl_A           93 KRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD  165 (248)
T ss_dssp             CEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC
T ss_pred             CEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC
Confidence            5899999999999999887632   445578888888877764    43  2333333444544478899999984

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.05  E-value=4.5e-06  Score=74.86  Aligned_cols=69  Identities=22%  Similarity=0.273  Sum_probs=46.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc------------CCC-eEEeeccccC-CC--CCCCcc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLP-AMIGSFASKQ-LP--YPSLSF  318 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR------------Gvp-a~~~~lda~r-LP--FpD~SF  318 (344)
                      .+|||||||+|.++..|++.... ..+.+.|+++.+++.|.++            +++ +.+-..|+.. ||  |++++|
T Consensus        51 ~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~  129 (246)
T 2vdv_E           51 VTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL  129 (246)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred             CEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence            47999999999999999875311 1334467777777666542            442 3333334554 77  889999


Q ss_pred             cceEec
Q 019228          319 DMLHCA  324 (344)
Q Consensus       319 DlVhcs  324 (344)
                      |.|+..
T Consensus       130 d~v~~~  135 (246)
T 2vdv_E          130 SKMFFC  135 (246)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            999865

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.05  E-value=2.1e-05  Score=71.64  Aligned_cols=85  Identities=19%  Similarity=0.160  Sum_probs=55.8

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CCC-e
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GLP-A  301 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a  301 (344)
                      ..+..++.+.+.++ ..        ..+|||+|||+|.++..|+..  +.   .+.+.|.++.+++.|++.    +++ +
T Consensus        94 ~te~l~~~~l~~~~-~~--------~~~vLDlG~GsG~~~~~la~~~~~~---~v~~vD~s~~~l~~a~~n~~~~~~~~v  161 (276)
T 2b3t_A           94 DTECLVEQALARLP-EQ--------PCRILDLGTGTGAIALALASERPDC---EIIAVDRMPDAVSLAQRNAQHLAIKNI  161 (276)
T ss_dssp             THHHHHHHHHHHSC-SS--------CCEEEEETCTTSHHHHHHHHHCTTS---EEEEECSSHHHHHHHHHHHHHHTCCSE
T ss_pred             hHHHHHHHHHHhcc-cC--------CCEEEEecCCccHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCce
Confidence            44556666766664 21        248999999999999988854  22   344568888887777654    443 3


Q ss_pred             EEeeccccCCCCCCCcccceEeccc
Q 019228          302 MIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       302 ~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      .+...|... ++++++||+|+|...
T Consensus       162 ~~~~~d~~~-~~~~~~fD~Iv~npP  185 (276)
T 2b3t_A          162 HILQSDWFS-ALAGQQFAMIVSNPP  185 (276)
T ss_dssp             EEECCSTTG-GGTTCCEEEEEECCC
T ss_pred             EEEEcchhh-hcccCCccEEEECCC
Confidence            333333333 456789999999743

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.03  E-value=4.3e-06  Score=74.07  Aligned_cols=66  Identities=12%  Similarity=0.021  Sum_probs=46.0

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC---CCeEEeeccccC----CCCCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQ----LPYPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~lda~r----LPFpD~SFDlVhc  323 (344)
                      .+|||+|||+|.++..|+++ +.  ..+.+.|+++.+++.|.++.   -.+.+...|+..    +|++ ++||+|++
T Consensus        76 ~~VLDlGcG~G~~~~~la~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~  149 (230)
T 1fbn_A           76 SKILYLGASAGTTPSHVADIADK--GIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE  149 (230)
T ss_dssp             CEEEEESCCSSHHHHHHHHHTTT--SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE
T ss_pred             CEEEEEcccCCHHHHHHHHHcCC--cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE
Confidence            58999999999999999876 31  13455788888887776542   123332334556    7887 89999994

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.03  E-value=5.2e-06  Score=77.87  Aligned_cols=88  Identities=16%  Similarity=0.101  Sum_probs=49.7

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC--------------
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG--------------  298 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG--------------  298 (344)
                      ...+.+.+....+        .+|||+|||+|.++..|++. +.. ..+.+.|.++.+++.|+++.              
T Consensus        94 ~~~~l~~l~~~~g--------~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~  164 (336)
T 2b25_A           94 INMILSMMDINPG--------DTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE  164 (336)
T ss_dssp             HHHHHHHHTCCTT--------CEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSC
T ss_pred             HHHHHHhcCCCCC--------CEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccc
Confidence            3445555554332        58999999999999988875 310 13344677777777766531              


Q ss_pred             --CCeEEeeccccCC--CCCCCcccceEecccccccC
Q 019228          299 --LPAMIGSFASKQL--PYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       299 --vpa~~~~lda~rL--PFpD~SFDlVhcs~~Li~W~  331 (344)
                        -.+.+...|...+  ++++++||+|++.. ..+|.
T Consensus       165 ~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~-~~~~~  200 (336)
T 2b25_A          165 WPDNVDFIHKDISGATEDIKSLTFDAVALDM-LNPHV  200 (336)
T ss_dssp             CCCCEEEEESCTTCCC-------EEEEEECS-SSTTT
T ss_pred             cCCceEEEECChHHcccccCCCCeeEEEECC-CCHHH
Confidence              1233333344555  67889999999853 33443

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.01  E-value=3.5e-06  Score=80.72  Aligned_cols=73  Identities=19%  Similarity=0.262  Sum_probs=51.2

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc-CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      ..+|||||||+|.++..|+++  ++.   +...|+ +.+++.|.++ ++.++.++  ... |+|++  |+|++..++++|
T Consensus       202 ~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~-~~~~~~a~~~~~v~~~~~D--~~~-~~p~~--D~v~~~~vlh~~  272 (364)
T 3p9c_A          202 LGTLVDVGGGVGATVAAIAAHYPTIK---GVNFDL-PHVISEAPQFPGVTHVGGD--MFK-EVPSG--DTILMKWILHDW  272 (364)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCE---EEEEEC-HHHHTTCCCCTTEEEEECC--TTT-CCCCC--SEEEEESCGGGS
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCe---EEEecC-HHHHHhhhhcCCeEEEeCC--cCC-CCCCC--CEEEehHHhccC
Confidence            468999999999999999874  332   233566 5666655443 23444554  344 78865  999999999999


Q ss_pred             Ccccc
Q 019228          331 DQKGK  335 (344)
Q Consensus       331 ~~~~g  335 (344)
                      ...+-
T Consensus       273 ~d~~~  277 (364)
T 3p9c_A          273 SDQHC  277 (364)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            76543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.01  E-value=1.3e-06  Score=81.18  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=42.2

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcCC-------CeEEe--eccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGL-------PAMIG--SFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRGv-------pa~~~--~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++.+++++ .|+++++.+ +...     +.++.+       .+.+-  ..|...||  +++||+|+|.
T Consensus        76 ~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~-----a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd  147 (265)
T 2oxt_A           76 GRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVG-----GHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCD  147 (265)
T ss_dssp             EEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCS-----SCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred             CEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhh-----hhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEe
Confidence            58999999999999999886 577777766 3211     111111       22222  34555665  8899999997


Q ss_pred             cc
Q 019228          325 RC  326 (344)
Q Consensus       325 ~~  326 (344)
                      .+
T Consensus       148 ~~  149 (265)
T 2oxt_A          148 VG  149 (265)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.00  E-value=2.1e-06  Score=81.09  Aligned_cols=72  Identities=18%  Similarity=0.266  Sum_probs=51.0

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc-CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      ..+|||||||+|.++..|+++  +.   .+...|+ +.+++.|++. ++.+..+++  .. |+|+  ||+|++..++++|
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~v~~~~~d~--~~-~~p~--~D~v~~~~~lh~~  259 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKL---KCIVFDR-PQVVENLSGSNNLTYVGGDM--FT-SIPN--ADAVLLKYILHNW  259 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHTTCCCBTTEEEEECCT--TT-CCCC--CSEEEEESCGGGS
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCC---eEEEeeC-HHHHhhcccCCCcEEEeccc--cC-CCCC--ccEEEeehhhccC
Confidence            368999999999999999875  32   3345677 6777666543 233444543  33 6664  9999999999999


Q ss_pred             Cccc
Q 019228          331 DQKG  334 (344)
Q Consensus       331 ~~~~  334 (344)
                      ...+
T Consensus       260 ~d~~  263 (352)
T 1fp2_A          260 TDKD  263 (352)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            7654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.00  E-value=4.2e-06  Score=75.58  Aligned_cols=71  Identities=20%  Similarity=0.190  Sum_probs=46.4

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccC-CCCCC--CcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LPYPS--LSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~r-LPFpD--~SFDlVhcs~  325 (344)
                      .+|||||||+|.++..|++.--....+.+.|+++.+++.|+++    ++.  +.+...|+.. +|..+  ++||+|++..
T Consensus        65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~  144 (248)
T 3tfw_A           65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDA  144 (248)
T ss_dssp             SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECS
T ss_pred             CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECC
Confidence            5899999999999999988610011345567788887777654    443  3333333433 55544  4999999753

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.00  E-value=9.8e-07  Score=82.61  Aligned_cols=64  Identities=17%  Similarity=0.248  Sum_probs=42.5

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcCC-------CeEEe--eccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGL-------PAMIG--SFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRGv-------pa~~~--~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++++ .|+++++.+ +..     .+.++..       .+.+-  ..|...||  +++||+|+|.
T Consensus        84 ~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~-----~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd  155 (276)
T 2wa2_A           84 GTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGT-----SGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCD  155 (276)
T ss_dssp             EEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCC-----TTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEEC
T ss_pred             CEEEEeccCCCHHHHHHHHcCCEEEEECch-hhh-----hhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEEC
Confidence            58999999999999999886 577777766 321     1222211       22222  34555665  8899999997


Q ss_pred             cc
Q 019228          325 RC  326 (344)
Q Consensus       325 ~~  326 (344)
                      .+
T Consensus       156 ~~  157 (276)
T 2wa2_A          156 IG  157 (276)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.99  E-value=2.9e-06  Score=81.33  Aligned_cols=73  Identities=21%  Similarity=0.334  Sum_probs=51.5

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc-CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      ..+|||||||+|.++..|+++  ++.   +...|+ +.+++.|.++ ++.+..+++  .. |+|++  |+|++..++++|
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~-~~~~~~a~~~~~v~~~~~d~--~~-~~p~~--D~v~~~~vlh~~  274 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSIN---AINFDL-PHVIQDAPAFSGVEHLGGDM--FD-GVPKG--DAIFIKWICHDW  274 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCE---EEEEEC-HHHHTTCCCCTTEEEEECCT--TT-CCCCC--SEEEEESCGGGB
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCE---EEEEeh-HHHHHhhhhcCCCEEEecCC--CC-CCCCC--CEEEEechhhcC
Confidence            468999999999999999874  332   233566 5666665443 244455554  34 77765  999999999999


Q ss_pred             Ccccc
Q 019228          331 DQKGK  335 (344)
Q Consensus       331 ~~~~g  335 (344)
                      ...+-
T Consensus       275 ~~~~~  279 (368)
T 3reo_A          275 SDEHC  279 (368)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            87653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.98  E-value=1.1e-05  Score=71.07  Aligned_cols=72  Identities=22%  Similarity=0.392  Sum_probs=46.7

Q ss_pred             CeEEEECCccchhhHHHhhC-Cce----EEEcccccccHHHHHHHHHc------------CCCeEEeeccccCCCCCC-C
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELL----TMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQLPYPS-L  316 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~----~~sIa~~D~sea~Iq~A~eR------------Gvpa~~~~lda~rLPFpD-~  316 (344)
                      .+|||||||+|.++..|++. +..    ...+...|.++.+++.|+++            .+.+..++  ... ++++ +
T Consensus        86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d--~~~-~~~~~~  162 (227)
T 1r18_A           86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD--GRK-GYPPNA  162 (227)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC--GGG-CCGGGC
T ss_pred             CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECC--ccc-CCCcCC
Confidence            58999999999999988763 210    00233456777777666543            23333443  333 6776 8


Q ss_pred             cccceEecccccc
Q 019228          317 SFDMLHCARCGVD  329 (344)
Q Consensus       317 SFDlVhcs~~Li~  329 (344)
                      +||+|++..++.+
T Consensus       163 ~fD~I~~~~~~~~  175 (227)
T 1r18_A          163 PYNAIHVGAAAPD  175 (227)
T ss_dssp             SEEEEEECSCBSS
T ss_pred             CccEEEECCchHH
Confidence            9999999877643

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.98  E-value=5.2e-06  Score=76.70  Aligned_cols=69  Identities=16%  Similarity=0.098  Sum_probs=47.5

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc-----CCCeEEeec-cccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER-----GLPAMIGSF-ASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR-----Gvpa~~~~l-da~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++.+|++. +-.+ .+.+.|+++.|++.+.++     ++..+.++. +....|+.+++||+|++.
T Consensus        79 ~~VldlG~G~G~~~~~la~~VG~~G-~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A           79 DRILYLGIASGTTASHMSDIIGPRG-RIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCTTC-EEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CEEEEecCcCCHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence            58999999999999999875 2111 233467777787766654     233344432 234578899999999975

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.98  E-value=5.6e-06  Score=74.20  Aligned_cols=67  Identities=7%  Similarity=0.079  Sum_probs=45.0

Q ss_pred             eEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHc----CCC---eEEeeccccC-CC-CCCCcccceEe
Q 019228          256 TILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQ-LP-YPSLSFDMLHC  323 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eR----Gvp---a~~~~lda~r-LP-FpD~SFDlVhc  323 (344)
                      +|||||||+|..+..|++.   +.   .+...|.++.+++.|++.    ++.   +.+-..|+.. +| +++++||+|++
T Consensus        59 ~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           59 GAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             EEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            8999999999999988873   22   344467777777776653    443   3333333333 33 44899999998


Q ss_pred             cc
Q 019228          324 AR  325 (344)
Q Consensus       324 s~  325 (344)
                      ..
T Consensus       136 d~  137 (221)
T 3dr5_A          136 QV  137 (221)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.98  E-value=8.8e-06  Score=72.79  Aligned_cols=41  Identities=17%  Similarity=0.149  Sum_probs=31.3

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHH
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLE  296 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~e  296 (344)
                      .+|||+|||+|.++..++++  . ....+.+.|+++.+++.|++
T Consensus        53 ~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~   95 (250)
T 1o9g_A           53 VTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAK   95 (250)
T ss_dssp             EEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHH
Confidence            47999999999999988775  2 12356667888888877763

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.97  E-value=1.2e-05  Score=76.15  Aligned_cols=70  Identities=19%  Similarity=0.100  Sum_probs=47.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|+++..++...-....+.+.|+++.+++.|++.    |+. +.+...|+..+|++.++||+|+|.
T Consensus       205 ~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~n  279 (354)
T 3tma_A          205 MRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILAN  279 (354)
T ss_dssp             CCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEEC
T ss_pred             CEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEEC
Confidence            5799999999999988776320001233456777777666543    542 344445677899999999999995

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.97  E-value=1.1e-05  Score=73.32  Aligned_cols=68  Identities=22%  Similarity=0.233  Sum_probs=46.6

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..|+++ +- ...+...|.++.+++.|++.    ++  .+.+...|.... +++++||+|++.
T Consensus       114 ~~VLDiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~D~V~~~  188 (277)
T 1o54_A          114 DRIIDTGVGSGAMCAVLARAVGS-SGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDEKDVDALFLD  188 (277)
T ss_dssp             CEEEEECCTTSHHHHHHHHHTTT-TCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSCCSEEEEEEC
T ss_pred             CEEEEECCcCCHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccCCccCEEEEC
Confidence            58999999999999988875 21 01344567888888777654    44  233333344444 788899999984

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=97.96  E-value=1.2e-05  Score=74.98  Aligned_cols=84  Identities=14%  Similarity=0.075  Sum_probs=55.6

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEe
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIG  304 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~  304 (344)
                      ...+..|.++++.+          .+|||||||+|.++..|+..+.. ..+.+.|+++..++.|++.    |+.  +.+.
T Consensus         9 s~RL~~i~~~v~~g----------~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~   77 (244)
T 3gnl_A            9 SKRLEKVASYITKN----------ERIADIGSDHAYLPCFAVKNQTA-SFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVR   77 (244)
T ss_dssp             CHHHHHHHTTCCSS----------EEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             hHHHHHHHHhCCCC----------CEEEEECCccHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEE
Confidence            44577788877631          47999999999999999987521 2445567777777777654    542  2332


Q ss_pred             eccccCCCCCCCcccceEecc
Q 019228          305 SFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs~  325 (344)
                      ..|....+.+++.||+|+.+.
T Consensus        78 ~gD~l~~~~~~~~~D~Iviag   98 (244)
T 3gnl_A           78 KGNGLAVIEKKDAIDTIVIAG   98 (244)
T ss_dssp             ECSGGGGCCGGGCCCEEEEEE
T ss_pred             ecchhhccCccccccEEEEeC
Confidence            223444445555799988654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.96  E-value=1.1e-05  Score=75.76  Aligned_cols=82  Identities=16%  Similarity=0.151  Sum_probs=55.5

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCeEEeeccc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFAS  308 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda  308 (344)
                      ...++.|.+.+....        . +|||||||+|.++..|++++.   .+.+.|.++.+++.+.++-  -.+.+-..|+
T Consensus        33 ~~i~~~Iv~~~~~~~--------~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~~~v~vi~~D~  100 (271)
T 3fut_A           33 EAHLRRIVEAARPFT--------G-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSGLPVRLVFQDA  100 (271)
T ss_dssp             HHHHHHHHHHHCCCC--------S-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTTSSEEEEESCG
T ss_pred             HHHHHHHHHhcCCCC--------C-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCCCCEEEEECCh
Confidence            456778888776432        3 799999999999999998752   2233456666666666542  1233333456


Q ss_pred             cCCCCCCC-cccceEec
Q 019228          309 KQLPYPSL-SFDMLHCA  324 (344)
Q Consensus       309 ~rLPFpD~-SFDlVhcs  324 (344)
                      ..+++++. .||.|+++
T Consensus       101 l~~~~~~~~~~~~iv~N  117 (271)
T 3fut_A          101 LLYPWEEVPQGSLLVAN  117 (271)
T ss_dssp             GGSCGGGSCTTEEEEEE
T ss_pred             hhCChhhccCccEEEec
Confidence            78888764 78988876

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.95  E-value=1.2e-06  Score=79.02  Aligned_cols=82  Identities=18%  Similarity=0.255  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--C-CeEEeecc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--L-PAMIGSFA  307 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--v-pa~~~~ld  307 (344)
                      ...++.|.+.+....+        .+|||||||+|.++..|++++.   .+.+.|+++.+++.|.++-  . .+.+-..|
T Consensus        15 ~~~~~~i~~~~~~~~~--------~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D   83 (245)
T 1yub_A           15 EKVLNQIIKQLNLKET--------DTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVTLIHQD   83 (245)
T ss_dssp             TTTHHHHHHHCCCCSS--------EEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEEECCSC
T ss_pred             HHHHHHHHHhcCCCCC--------CEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhccCCceEEEECC
Confidence            3346777777765332        4799999999999999988753   3344566666655554431  1 23343456


Q ss_pred             ccCCCCCC-CcccceEec
Q 019228          308 SKQLPYPS-LSFDMLHCA  324 (344)
Q Consensus       308 a~rLPFpD-~SFDlVhcs  324 (344)
                      ...+|+++ ++| .|+++
T Consensus        84 ~~~~~~~~~~~f-~vv~n  100 (245)
T 1yub_A           84 ILQFQFPNKQRY-KIVGN  100 (245)
T ss_dssp             CTTTTCCCSSEE-EEEEE
T ss_pred             hhhcCcccCCCc-EEEEe
Confidence            77889885 789 56654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.94  E-value=8.3e-06  Score=71.87  Aligned_cols=72  Identities=18%  Similarity=0.098  Sum_probs=48.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccC-CCCC--CCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LPYP--SLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~r-LPFp--D~SFDlVhcs~  325 (344)
                      .+|||||||+|.++..|++..- ...+.+.|.++.+++.|+++    ++.  +.+...|+.. +|+.  +++||+|++..
T Consensus        56 ~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  134 (233)
T 2gpy_A           56 ARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA  134 (233)
T ss_dssp             SEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred             CEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence            5899999999999999887510 12445568888888777765    432  3333334444 3554  68999999976


Q ss_pred             cc
Q 019228          326 CG  327 (344)
Q Consensus       326 ~L  327 (344)
                      ..
T Consensus       135 ~~  136 (233)
T 2gpy_A          135 AK  136 (233)
T ss_dssp             GG
T ss_pred             CH
Confidence            54

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=97.93  E-value=1.5e-05  Score=73.67  Aligned_cols=85  Identities=13%  Similarity=0.091  Sum_probs=56.8

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEE
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMI  303 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~  303 (344)
                      ....+..|.++++.+          .+|||||||+|.++..|+..+.. ..+.+.|+++.+++.|++.    |+.  +.+
T Consensus         8 Ls~RL~~i~~~v~~g----------~~VlDIGtGsG~l~i~la~~~~~-~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~   76 (230)
T 3lec_A            8 LSKRLQKVANYVPKG----------ARLLDVGSDHAYLPIFLLQMGYC-DFAIAGEVVNGPYQSALKNVSEHGLTSKIDV   76 (230)
T ss_dssp             CCHHHHHHHTTSCTT----------EEEEEETCSTTHHHHHHHHTTCE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             HHHHHHHHHHhCCCC----------CEEEEECCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence            345677888877631          47999999999999999987522 2445567777777776653    442  333


Q ss_pred             eeccccCCCCCCCcccceEecc
Q 019228          304 GSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      ...|....+.+++.||+|+.+.
T Consensus        77 ~~gD~l~~~~~~~~~D~IviaG   98 (230)
T 3lec_A           77 RLANGLSAFEEADNIDTITICG   98 (230)
T ss_dssp             EECSGGGGCCGGGCCCEEEEEE
T ss_pred             EECchhhccccccccCEEEEeC
Confidence            2234445556666899987654

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.92  E-value=6.9e-06  Score=71.30  Aligned_cols=69  Identities=12%  Similarity=0.049  Sum_probs=44.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccC-CCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~r-LPFpD~SFDlVhcs  324 (344)
                      .+|||||||+|.++..|++.--....+...|.++.+++.|+++    ++.  +.+...|+.. +|+.++ ||+|++.
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~  133 (210)
T 3c3p_A           58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD  133 (210)
T ss_dssp             SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred             CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence            5899999999999999987611011344567778877777653    331  2222223433 466667 9999986

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.92  E-value=9.5e-06  Score=69.28  Aligned_cols=65  Identities=15%  Similarity=0.198  Sum_probs=42.7

Q ss_pred             CeEEEECCccchhhHHHhhC----C--ceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCC----------------
Q 019228          255 RTILDIGCGYGSFGAHLFSK----E--LLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP----------------  312 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer----~--V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLP----------------  312 (344)
                      .+|||+|||+|.++..|+++    +  |+++++.+..         ...++.+..++  ...++                
T Consensus        24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d--~~~~~~~~~~~~~~i~~~~~~   92 (201)
T 2plw_A           24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGE--IGKDNMNNIKNINYIDNMNNN   92 (201)
T ss_dssp             EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECC--TTTTSSCCC-----------C
T ss_pred             CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEcc--ccchhhhhhccccccccccch
Confidence            47999999999999998864    2  4444443311         01234444444  45566                


Q ss_pred             ---------CCCCcccceEecccccccC
Q 019228          313 ---------YPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       313 ---------FpD~SFDlVhcs~~Li~W~  331 (344)
                               |++++||+|+|..++ +|.
T Consensus        93 ~~~~~~~~~~~~~~fD~v~~~~~~-~~~  119 (201)
T 2plw_A           93 SVDYKLKEILQDKKIDIILSDAAV-PCI  119 (201)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCC-CCC
T ss_pred             hhHHHHHhhcCCCcccEEEeCCCc-CCC
Confidence                     788999999997654 553

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.92  E-value=1e-05  Score=75.97  Aligned_cols=75  Identities=15%  Similarity=0.173  Sum_probs=50.4

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCce-EEEcccccccHHHHHHHHHc---CCCeEEeec
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLER---GLPAMIGSF  306 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~-~~sIa~~D~sea~Iq~A~eR---Gvpa~~~~l  306 (344)
                      ...++.|.+.+....+        .+|||||||+|.++..|+++... ...+.+.|+++.+++.++++   .+.++.+  
T Consensus        28 ~~i~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~--   97 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERG--------ERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAG--   97 (279)
T ss_dssp             HHHHHHHHHHHCCCTT--------CEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEES--
T ss_pred             HHHHHHHHHhcCCCCc--------CEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEEC--
Confidence            4567778888765432        58999999999999999876321 00133457777888877765   2333444  


Q ss_pred             cccCCCCCC
Q 019228          307 ASKQLPYPS  315 (344)
Q Consensus       307 da~rLPFpD  315 (344)
                      |+..+||++
T Consensus        98 D~~~~~~~~  106 (279)
T 3uzu_A           98 DALTFDFGS  106 (279)
T ss_dssp             CGGGCCGGG
T ss_pred             ChhcCChhH
Confidence            567888875

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.91  E-value=1.4e-06  Score=82.33  Aligned_cols=72  Identities=19%  Similarity=0.250  Sum_probs=45.8

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHH--HcC----CCeEEeeccccCCCCCCCcccceEecc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTL--ERG----LPAMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~--eRG----vpa~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      ..+|||||||+|.++..|+++  ++.   +...|+.+ ++..+.  +.+    +.+..+++  . .|+|  +||+|++..
T Consensus       185 ~~~vLDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~-~~~~~~~~~~~~~~~v~~~~~d~--~-~~~p--~~D~v~~~~  255 (348)
T 3lst_A          185 TGTVADVGGGRGGFLLTVLREHPGLQ---GVLLDRAE-VVARHRLDAPDVAGRWKVVEGDF--L-REVP--HADVHVLKR  255 (348)
T ss_dssp             SEEEEEETCTTSHHHHHHHHHCTTEE---EEEEECHH-HHTTCCCCCGGGTTSEEEEECCT--T-TCCC--CCSEEEEES
T ss_pred             CceEEEECCccCHHHHHHHHHCCCCE---EEEecCHH-HhhcccccccCCCCCeEEEecCC--C-CCCC--CCcEEEEeh
Confidence            358999999999999999874  332   23345532 222110  012    23344443  2 4555  899999999


Q ss_pred             cccccCccc
Q 019228          326 CGVDWDQKG  334 (344)
Q Consensus       326 ~Li~W~~~~  334 (344)
                      ++++|...+
T Consensus       256 vlh~~~d~~  264 (348)
T 3lst_A          256 ILHNWGDED  264 (348)
T ss_dssp             CGGGSCHHH
T ss_pred             hccCCCHHH
Confidence            999998763

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.90  E-value=1.2e-05  Score=75.91  Aligned_cols=70  Identities=13%  Similarity=0.113  Sum_probs=49.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC-CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv-pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|..+..|++.--....+.+.|+++.+++.++++    |+ .+.+...|+..++..+++||+|++.
T Consensus       120 ~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          120 EIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence            5899999999999999886410001344568888887776654    55 3444445677777778899999983

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.89  E-value=2.2e-05  Score=77.04  Aligned_cols=84  Identities=14%  Similarity=0.167  Sum_probs=49.7

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCC---ceEEEcccccccHHHHHHHHHcCCC--eEE
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLERGLP--AMI  303 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~---V~~~sIa~~D~sea~Iq~A~eRGvp--a~~  303 (344)
                      +...|.+.|.+....-+|        .+|||||||||-++...++.+   |++++..+  ......+.+.+.|+.  +.+
T Consensus        67 Rt~aY~~Ai~~~~~~~~~--------k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~--~~~~a~~~~~~n~~~~~i~~  136 (376)
T 4hc4_A           67 RTDAYRLGILRNWAALRG--------KTVLDVGAGTGILSIFCAQAGARRVYAVEASA--IWQQAREVVRFNGLEDRVHV  136 (376)
T ss_dssp             HHHHHHHHHHTTHHHHTT--------CEEEEETCTTSHHHHHHHHTTCSEEEEEECST--THHHHHHHHHHTTCTTTEEE
T ss_pred             HHHHHHHHHHhCHHhcCC--------CEEEEeCCCccHHHHHHHHhCCCEEEEEeChH--HHHHHHHHHHHcCCCceEEE
Confidence            446677777543322122        589999999998887777764   55555432  222222334444543  333


Q ss_pred             eeccccCCCCCCCcccceEe
Q 019228          304 GSFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhc  323 (344)
                      -..+.+.+.+| +.||+|+|
T Consensus       137 i~~~~~~~~lp-e~~Dvivs  155 (376)
T 4hc4_A          137 LPGPVETVELP-EQVDAIVS  155 (376)
T ss_dssp             EESCTTTCCCS-SCEEEEEC
T ss_pred             EeeeeeeecCC-ccccEEEe
Confidence            23345677777 57999998

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.89  E-value=2.5e-05  Score=71.81  Aligned_cols=76  Identities=21%  Similarity=0.277  Sum_probs=54.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-CCeEEeecccc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASK  309 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-vpa~~~~lda~  309 (344)
                      ...++.|.+.+....+        .+|||||||+|.++..|++++.  ..+.+.|+++.+++.+.++. ..+.+-..|+.
T Consensus        17 ~~i~~~iv~~~~~~~~--------~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~   86 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEG--------NTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSIGDERLEVINEDAS   86 (249)
T ss_dssp             HHHHHHHHHHTTCCTT--------CEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTSCCTTEEEECSCTT
T ss_pred             HHHHHHHHHhcCCCCc--------CEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhccCCCeEEEEcchh
Confidence            4567788888765432        5899999999999999998841  14456788999998887762 12334444677


Q ss_pred             CCCCCCC
Q 019228          310 QLPYPSL  316 (344)
Q Consensus       310 rLPFpD~  316 (344)
                      .+||++.
T Consensus        87 ~~~~~~~   93 (249)
T 3ftd_A           87 KFPFCSL   93 (249)
T ss_dssp             TCCGGGS
T ss_pred             hCChhHc
Confidence            8888864

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=97.87  E-value=1.5e-05  Score=74.30  Aligned_cols=83  Identities=19%  Similarity=0.349  Sum_probs=53.7

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--e
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--A  301 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a  301 (344)
                      ..+..++.+.+.++...        ..+|||+|||+|.++..|+.. +.   .+.+.|+++.+++.|++.    ++.  +
T Consensus       107 ~te~lv~~~l~~~~~~~--------~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v  175 (284)
T 1nv8_A          107 ETEELVELALELIRKYG--------IKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRF  175 (284)
T ss_dssp             THHHHHHHHHHHHHHHT--------CCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSE
T ss_pred             hHHHHHHHHHHHhcccC--------CCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCce
Confidence            44566677766664321        247999999999999998876 32   345567888888777654    442  3


Q ss_pred             EEeeccccCCCCCCCcc---cceEec
Q 019228          302 MIGSFASKQLPYPSLSF---DMLHCA  324 (344)
Q Consensus       302 ~~~~lda~rLPFpD~SF---DlVhcs  324 (344)
                      .+...|... +++ ++|   |+|+|+
T Consensus       176 ~~~~~D~~~-~~~-~~f~~~D~Ivsn  199 (284)
T 1nv8_A          176 FVRKGEFLE-PFK-EKFASIEMILSN  199 (284)
T ss_dssp             EEEESSTTG-GGG-GGTTTCCEEEEC
T ss_pred             EEEECcchh-hcc-cccCCCCEEEEc
Confidence            332223332 333 589   999996

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.87  E-value=1.2e-05  Score=80.78  Aligned_cols=87  Identities=10%  Similarity=0.098  Sum_probs=53.8

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH-----------cC
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE-----------RG  298 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e-----------RG  298 (344)
                      ...+..|.+.+.+..+        .+|||||||+|.++..++.. +..  .+.+.|+++.+++.|.+           .|
T Consensus       159 ~~~i~~il~~l~l~~g--------d~VLDLGCGtG~l~l~lA~~~g~~--kVvGIDiS~~~lelAr~n~e~frkr~~~~G  228 (438)
T 3uwp_A          159 FDLVAQMIDEIKMTDD--------DLFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYG  228 (438)
T ss_dssp             HHHHHHHHHHHCCCTT--------CEEEEESCTTSHHHHHHHHHCCCS--EEEEEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCC--------CEEEEeCCCCCHHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            3345556666655433        58999999999999888753 321  23345566555555443           23


Q ss_pred             C---CeEEeeccccCCCCCC--CcccceEecccc
Q 019228          299 L---PAMIGSFASKQLPYPS--LSFDMLHCARCG  327 (344)
Q Consensus       299 v---pa~~~~lda~rLPFpD--~SFDlVhcs~~L  327 (344)
                      +   .+.+-..|...+||++  .+||+|+++..+
T Consensus       229 l~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~  262 (438)
T 3uwp_A          229 KKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA  262 (438)
T ss_dssp             BCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT
T ss_pred             CCCCCeEEEECcccCCccccccCCccEEEEcccc
Confidence            3   2333334567889876  589999987543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.85  E-value=2.2e-05  Score=74.08  Aligned_cols=71  Identities=15%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc------C---CCeEEeeccccC-CCCCCCcccceEe
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------G---LPAMIGSFASKQ-LPYPSLSFDMLHC  323 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR------G---vpa~~~~lda~r-LPFpD~SFDlVhc  323 (344)
                      ..+|||||||+|.++..++++.- ...+...|+++.+++.|+++      +   ..+.+...|+.. |+..+++||+|++
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~  174 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  174 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence            46899999999999999988731 12455578888888877754      1   123332233433 5667899999999


Q ss_pred             cc
Q 019228          324 AR  325 (344)
Q Consensus       324 s~  325 (344)
                      ..
T Consensus       175 d~  176 (304)
T 2o07_A          175 DS  176 (304)
T ss_dssp             EC
T ss_pred             CC
Confidence            53

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.84  E-value=5.3e-06  Score=74.94  Aligned_cols=65  Identities=14%  Similarity=0.156  Sum_probs=41.3

Q ss_pred             CeEEEECCccchhhHHHhhC--------CceEEEcccccccHHHHHHHHHc--CCCeEEeeccccC---CCCCCC-cccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK--------ELLTMCIANYEASGSQVQLTLER--GLPAMIGSFASKQ---LPYPSL-SFDM  320 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--------~V~~~sIa~~D~sea~Iq~A~eR--Gvpa~~~~lda~r---LPFpD~-SFDl  320 (344)
                      .+|||||||+|.++..|++.        .|+++++     ++.+++.|+..  .+.+..+  |+..   +|+.++ +||+
T Consensus        83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~-----s~~~l~~a~~~~~~v~~~~g--D~~~~~~l~~~~~~~fD~  155 (236)
T 2bm8_A           83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDR-----DLSRCQIPASDMENITLHQG--DCSDLTTFEHLREMAHPL  155 (236)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEES-----CCTTCCCCGGGCTTEEEEEC--CSSCSGGGGGGSSSCSSE
T ss_pred             CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeC-----ChHHHHHHhccCCceEEEEC--cchhHHHHHhhccCCCCE
Confidence            58999999999999988764        2444444     44444444322  2334455  4555   476654 7999


Q ss_pred             eEeccc
Q 019228          321 LHCARC  326 (344)
Q Consensus       321 Vhcs~~  326 (344)
                      |++...
T Consensus       156 I~~d~~  161 (236)
T 2bm8_A          156 IFIDNA  161 (236)
T ss_dssp             EEEESS
T ss_pred             EEECCc
Confidence            998643

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.83  E-value=1.1e-05  Score=70.19  Aligned_cols=68  Identities=15%  Similarity=0.162  Sum_probs=44.6

Q ss_pred             CeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHc----CCC--eEEeeccc-cCCCCCC-----Cccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFAS-KQLPYPS-----LSFD  319 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda-~rLPFpD-----~SFD  319 (344)
                      .+|||||||+|.++..|++.   +.   .+.+.|.++.+++.|+++    ++.  +.+...++ +.+|...     ++||
T Consensus        66 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           66 KKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             SEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             CEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            58999999999999999886   32   345567777777777654    432  33322233 2233222     8999


Q ss_pred             ceEecc
Q 019228          320 MLHCAR  325 (344)
Q Consensus       320 lVhcs~  325 (344)
                      +|++..
T Consensus       143 ~v~~~~  148 (225)
T 3tr6_A          143 LIYIDA  148 (225)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999653

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.81  E-value=2.4e-05  Score=73.40  Aligned_cols=73  Identities=12%  Similarity=0.103  Sum_probs=49.9

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---------CCeEEeeccccCCCC--CCCcccceE
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPY--PSLSFDMLH  322 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---------vpa~~~~lda~rLPF--pD~SFDlVh  322 (344)
                      ..+|||||||+|.++..++++.- ...+...|+++.+++.|+++-         ..+.+...|+..+++  ++++||+|+
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi  174 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI  174 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence            36899999999999999987621 124556788888888877642         123333334555554  589999999


Q ss_pred             ecccc
Q 019228          323 CARCG  327 (344)
Q Consensus       323 cs~~L  327 (344)
                      +....
T Consensus       175 ~d~~~  179 (304)
T 3bwc_A          175 IDTTD  179 (304)
T ss_dssp             EECC-
T ss_pred             ECCCC
Confidence            96544

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.81  E-value=2.3e-05  Score=74.90  Aligned_cols=67  Identities=12%  Similarity=0.055  Sum_probs=46.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC---eEEeeccccCCC-C---CCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLP-Y---PSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp---a~~~~lda~rLP-F---pD~SFDlVhc  323 (344)
                      .+|||+|||+|.++..++..+.   .+.+.|+++.+++.|++.    ++.   +.+-..|+..+. .   .+++||+|++
T Consensus       155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence            4899999999999999998764   455678888888777654    432   333333443332 1   2679999999


Q ss_pred             c
Q 019228          324 A  324 (344)
Q Consensus       324 s  324 (344)
                      .
T Consensus       232 d  232 (332)
T 2igt_A          232 D  232 (332)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.78  E-value=3.6e-05  Score=70.81  Aligned_cols=70  Identities=13%  Similarity=0.069  Sum_probs=46.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      .+|||+|||+|.++..++.+.- ...+.+.|.++.+++.|++.    ++. ..+-..|+..+|. +++||+|++...
T Consensus       121 ~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p  195 (272)
T 3a27_A          121 EVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYV  195 (272)
T ss_dssp             CEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCC
T ss_pred             CEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCc
Confidence            5899999999999999987521 01234457777777666542    442 3333334555555 779999998743

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.76  E-value=1.6e-05  Score=70.54  Aligned_cols=72  Identities=17%  Similarity=0.109  Sum_probs=45.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccC-CC--------------C
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LP--------------Y  313 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~r-LP--------------F  313 (344)
                      .+|||||||+|.++..|++..-....+...|.++.+++.|+++    ++.  +.+...|+.. +|              |
T Consensus        62 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f  141 (239)
T 2hnk_A           62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDF  141 (239)
T ss_dssp             SEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTT
T ss_pred             CEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccc
Confidence            5899999999999999887510011344567777777777654    432  2222222222 22              5


Q ss_pred             CC--CcccceEeccc
Q 019228          314 PS--LSFDMLHCARC  326 (344)
Q Consensus       314 pD--~SFDlVhcs~~  326 (344)
                      ++  ++||+|++...
T Consensus       142 ~~~~~~fD~I~~~~~  156 (239)
T 2hnk_A          142 AFGPSSIDLFFLDAD  156 (239)
T ss_dssp             CCSTTCEEEEEECSC
T ss_pred             cCCCCCcCEEEEeCC
Confidence            55  89999998743

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.75  E-value=4.1e-05  Score=76.56  Aligned_cols=83  Identities=14%  Similarity=0.110  Sum_probs=48.3

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-C---ceEEEcccccccHHHHHHH-------HH----
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-E---LLTMCIANYEASGSQVQLT-------LE----  296 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~---V~~~sIa~~D~sea~Iq~A-------~e----  296 (344)
                      ..+..+.+.+....        ..+|||||||+|.++..|++. +   |+++     |.++.+++.|       ++    
T Consensus       229 ~~v~~ml~~l~l~~--------g~~VLDLGCGsG~la~~LA~~~g~~~V~GV-----Dis~~~l~~A~~Ml~~ar~~~~~  295 (433)
T 1u2z_A          229 NFLSDVYQQCQLKK--------GDTFMDLGSGVGNCVVQAALECGCALSFGC-----EIMDDASDLTILQYEELKKRCKL  295 (433)
T ss_dssp             HHHHHHHHHTTCCT--------TCEEEEESCTTSHHHHHHHHHHCCSEEEEE-----ECCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCC--------CCEEEEeCCCcCHHHHHHHHHCCCCEEEEE-----eCCHHHHHHHHHhHHHHHHHHHH
Confidence            34455556555433        258999999999999998874 2   4444     4444444444       43    


Q ss_pred             cCC---CeEEeeccccCC--CC--CCCcccceEecccc
Q 019228          297 RGL---PAMIGSFASKQL--PY--PSLSFDMLHCARCG  327 (344)
Q Consensus       297 RGv---pa~~~~lda~rL--PF--pD~SFDlVhcs~~L  327 (344)
                      .|+   .+.+...+....  +|  +.++||+|+++.++
T Consensus       296 ~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l  333 (433)
T 1u2z_A          296 YGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL  333 (433)
T ss_dssp             TTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT
T ss_pred             cCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc
Confidence            252   222222222222  33  35899999997555

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.74  E-value=2.6e-05  Score=73.44  Aligned_cols=70  Identities=11%  Similarity=0.012  Sum_probs=50.9

Q ss_pred             CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEecccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      ...+|||||||+|-|+..++ ...   .+.+.|++..+++++.+.    +++..+...|....|++. +||+|+..-++
T Consensus       105 ~p~~VLDlGCG~gpLal~~~-~~~---~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~l  178 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER-GIA---SVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLL  178 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT-TCS---EEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCH
T ss_pred             CCCeEEEecCCccHHHHHhc-cCC---eEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCC-CcchHHHHHHH
Confidence            35699999999999998877 221   334467777888776654    666666666666777666 89999988444

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=97.72  E-value=9.3e-06  Score=76.81  Aligned_cols=72  Identities=18%  Similarity=0.261  Sum_probs=49.0

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc-CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      ..+|||||||+|.++..++++  ++.   +...|+ +.+++.|.+. ++.+..++  ... |+|  +||+|++..++++|
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~-~~~~~~a~~~~~v~~~~~d--~~~-~~~--~~D~v~~~~vlh~~  264 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLK---CTVFDQ-PQVVGNLTGNENLNFVGGD--MFK-SIP--SADAVLLKWVLHDW  264 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSE---EEEEEC-HHHHSSCCCCSSEEEEECC--TTT-CCC--CCSEEEEESCGGGS
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCe---EEEecc-HHHHhhcccCCCcEEEeCc--cCC-CCC--CceEEEEcccccCC
Confidence            368999999999999999875  332   233466 4566555432 23344444  334 676  49999999999889


Q ss_pred             Cccc
Q 019228          331 DQKG  334 (344)
Q Consensus       331 ~~~~  334 (344)
                      ...+
T Consensus       265 ~d~~  268 (358)
T 1zg3_A          265 NDEQ  268 (358)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            7643

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.71  E-value=0.00015  Score=71.68  Aligned_cols=65  Identities=17%  Similarity=0.373  Sum_probs=45.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..|++...   .+.+.|.++.+++.|++.    ++.+.+-..|+..++. + +||+|++.
T Consensus       292 ~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~d  360 (425)
T 2jjq_A          292 EKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV-K-GFDTVIVD  360 (425)
T ss_dssp             SEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC-T-TCSEEEEC
T ss_pred             CEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc-c-CCCEEEEc
Confidence            5899999999999999998743   344567777777766543    5544343445556542 2 89999985

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.70  E-value=6.7e-06  Score=78.13  Aligned_cols=95  Identities=16%  Similarity=0.152  Sum_probs=55.3

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccch--hhHHHhhC---CceEEEcccccccHHHHHHHHHc--CCC-
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGS--FGAHLFSK---ELLTMCIANYEASGSQVQLTLER--GLP-  300 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGs--faa~Laer---~V~~~sIa~~D~sea~Iq~A~eR--Gvp-  300 (344)
                      .+..++..+.++++..       .+++++||||||+++  +...++++   +.   .+...|.++.|++.|+++  +.+ 
T Consensus        61 ~nr~fl~rav~~l~~~-------~g~~q~LDLGcG~pT~~~~~~la~~~~P~a---rVv~VD~sp~mLa~Ar~~l~~~~~  130 (277)
T 3giw_A           61 ANRDWMNRAVAHLAKE-------AGIRQFLDIGTGIPTSPNLHEIAQSVAPES---RVVYVDNDPIVLTLSQGLLASTPE  130 (277)
T ss_dssp             HHHHHHHHHHHHHHHT-------SCCCEEEEESCCSCCSSCHHHHHHHHCTTC---EEEEEECCHHHHHTTHHHHCCCSS
T ss_pred             HHHHHHHHHHHHhccc-------cCCCEEEEeCCCCCcccHHHHHHHHHCCCC---EEEEEeCChHHHHHHHHHhccCCC
Confidence            4456677776666522       247899999999843  33333332   22   345578888888877765  211 


Q ss_pred             --eEEeeccccCC------CCCCCccc-----ceEecccccccCccc
Q 019228          301 --AMIGSFASKQL------PYPSLSFD-----MLHCARCGVDWDQKG  334 (344)
Q Consensus       301 --a~~~~lda~rL------PFpD~SFD-----lVhcs~~Li~W~~~~  334 (344)
                        ..+-..|...+      |..+++||     .|+++.+| ||..+.
T Consensus       131 ~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avL-H~l~d~  176 (277)
T 3giw_A          131 GRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIV-HFVLDE  176 (277)
T ss_dssp             SEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCG-GGSCGG
T ss_pred             CcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhH-hcCCch
Confidence              22323344454      22256777     46666555 888765

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.70  E-value=5.3e-05  Score=69.56  Aligned_cols=70  Identities=16%  Similarity=0.123  Sum_probs=42.7

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHH----HHHHHHc-CCCeEEeeccccCCC---CCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQ----VQLTLER-GLPAMIGSFASKQLP---YPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~----Iq~A~eR-Gvpa~~~~lda~rLP---FpD~SFDlVhcs~  325 (344)
                      .+|||+|||+|.++.+|++. +-.+ .+.+.|.++.|    ++.|.++ ++.+..++  +..++   ...++||+|++..
T Consensus        78 ~~VLDlG~GtG~~t~~la~~v~~~G-~V~avD~s~~~l~~l~~~a~~r~nv~~i~~D--a~~~~~~~~~~~~~D~I~~d~  154 (232)
T 3id6_C           78 TKVLYLGAASGTTISHVSDIIELNG-KAYGVEFSPRVVRELLLVAQRRPNIFPLLAD--ARFPQSYKSVVENVDVLYVDI  154 (232)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHTTTS-EEEEEECCHHHHHHHHHHHHHCTTEEEEECC--TTCGGGTTTTCCCEEEEEECC
T ss_pred             CEEEEEeecCCHHHHHHHHHhCCCC-EEEEEECcHHHHHHHHHHhhhcCCeEEEEcc--cccchhhhccccceEEEEecC
Confidence            58999999999999988764 1000 22334566654    3455554 33344444  44432   2257999999975


Q ss_pred             cc
Q 019228          326 CG  327 (344)
Q Consensus       326 ~L  327 (344)
                      ..
T Consensus       155 a~  156 (232)
T 3id6_C          155 AQ  156 (232)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.69  E-value=5.7e-05  Score=66.07  Aligned_cols=69  Identities=13%  Similarity=0.126  Sum_probs=42.9

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc-----CCCeEEeeccccCC---CCCCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQL---PYPSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR-----Gvpa~~~~lda~rL---PFpD~SFDlVhcs~  325 (344)
                      .+|||+|||+|.++..|+++ +.. ..+.+.|.++.+++.+.++     ++.+..++  ....   +...++||+|++..
T Consensus        75 ~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d--~~~~~~~~~~~~~~D~v~~~~  151 (227)
T 1g8a_A           75 KSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEERRNIVPILGD--ATKPEEYRALVPKVDVIFEDV  151 (227)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSCTTEEEEECC--TTCGGGGTTTCCCEEEEEECC
T ss_pred             CEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhccCCCEEEEcc--CCCcchhhcccCCceEEEECC
Confidence            58999999999999998865 110 0234457777766655442     23334444  4442   22246899999864


Q ss_pred             c
Q 019228          326 C  326 (344)
Q Consensus       326 ~  326 (344)
                      .
T Consensus       152 ~  152 (227)
T 1g8a_A          152 A  152 (227)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=97.68  E-value=3.9e-05  Score=70.50  Aligned_cols=80  Identities=13%  Similarity=0.168  Sum_probs=51.9

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC----eEE
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP----AMI  303 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp----a~~  303 (344)
                      ..+..|.++++.+          .+|||||||+|.++..|+..+.. ..+.+.|+++..++.|++.    |+.    +..
T Consensus         4 ~RL~~l~~~v~~g----------~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~   72 (225)
T 3kr9_A            4 KRLELVASFVSQG----------AILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL   72 (225)
T ss_dssp             HHHHHHHTTSCTT----------EEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHhCCCC----------CEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEE
Confidence            3466677776621          47999999999999999987522 2445567777777766653    443    344


Q ss_pred             eeccccCCCCCCC-cccceEecc
Q 019228          304 GSFASKQLPYPSL-SFDMLHCAR  325 (344)
Q Consensus       304 ~~lda~rLPFpD~-SFDlVhcs~  325 (344)
                      +++ ..  +++.+ .||+|+.+.
T Consensus        73 ~d~-l~--~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           73 ANG-LA--AFEETDQVSVITIAG   92 (225)
T ss_dssp             CSG-GG--GCCGGGCCCEEEEEE
T ss_pred             Cch-hh--hcccCcCCCEEEEcC
Confidence            442 12  34444 699888654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.68  E-value=1.4e-05  Score=71.25  Aligned_cols=71  Identities=15%  Similarity=0.171  Sum_probs=45.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC----CeEEeecc--ccCCCCCC--CcccceE
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFA--SKQLPYPS--LSFDMLH  322 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv----pa~~~~ld--a~rLPFpD--~SFDlVh  322 (344)
                      .+|||||||+|.++..|++.--....+...|.++.+++.|++.    ++    .+..+++.  ...+|+++  ++||+|+
T Consensus        74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~  153 (232)
T 3cbg_A           74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIF  153 (232)
T ss_dssp             CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEE
T ss_pred             CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEE
Confidence            5899999999999999987510011344467777777777653    43    23333321  12455656  8999999


Q ss_pred             ecc
Q 019228          323 CAR  325 (344)
Q Consensus       323 cs~  325 (344)
                      +..
T Consensus       154 ~d~  156 (232)
T 3cbg_A          154 IDA  156 (232)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            864

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.66  E-value=9.9e-06  Score=70.61  Aligned_cols=71  Identities=20%  Similarity=0.141  Sum_probs=44.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccC-CC-CC---CCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LP-YP---SLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~r-LP-Fp---D~SFDlVhc  323 (344)
                      .+|||||||+|.++..|++.--....+.+.|.++.+++.|+++    ++.  +.+-..|+.. +| ++   .++||+|++
T Consensus        60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~  139 (223)
T 3duw_A           60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFI  139 (223)
T ss_dssp             SEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEE
T ss_pred             CEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEE
Confidence            5899999999999999988611011445567777777776653    442  3332223322 22 22   267999997


Q ss_pred             cc
Q 019228          324 AR  325 (344)
Q Consensus       324 s~  325 (344)
                      ..
T Consensus       140 d~  141 (223)
T 3duw_A          140 DA  141 (223)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.66  E-value=2.3e-05  Score=71.98  Aligned_cols=68  Identities=19%  Similarity=0.178  Sum_probs=46.7

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CC-CeEEeeccccCCCC----CCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY----PSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gv-pa~~~~lda~rLPF----pD~SFDlVhc  323 (344)
                      .+|||+|||+|.++..|++.  +.  ..+.+.|.++.+++.++++    |+ .+.+-..|+..++.    ++++||+|++
T Consensus        85 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~  162 (274)
T 3ajd_A           85 DFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILL  162 (274)
T ss_dssp             CEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEE
Confidence            58999999999999988873  21  1334467777777766554    54 23343445666665    3789999998


Q ss_pred             c
Q 019228          324 A  324 (344)
Q Consensus       324 s  324 (344)
                      .
T Consensus       163 d  163 (274)
T 3ajd_A          163 D  163 (274)
T ss_dssp             E
T ss_pred             c
Confidence            6

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.65  E-value=4.6e-05  Score=70.60  Aligned_cols=70  Identities=10%  Similarity=0.132  Sum_probs=48.2

Q ss_pred             CCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc------CC---CeEEeeccccC-CCCCCCcccceE
Q 019228          254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER------GL---PAMIGSFASKQ-LPYPSLSFDMLH  322 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR------Gv---pa~~~~lda~r-LPFpD~SFDlVh  322 (344)
                      .++|||||||+|.++..++++ ++.  .+...|+++.+++.|++.      ++   .+.+-..|+.. |+..+++||+|+
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVK--KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCS--EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCc--eEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            468999999999999999887 332  445578888888887763      12   12222223333 555678999999


Q ss_pred             ecc
Q 019228          323 CAR  325 (344)
Q Consensus       323 cs~  325 (344)
                      +..
T Consensus       154 ~d~  156 (275)
T 1iy9_A          154 VDS  156 (275)
T ss_dssp             ESC
T ss_pred             ECC
Confidence            953

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.64  E-value=3.7e-05  Score=64.71  Aligned_cols=57  Identities=16%  Similarity=-0.030  Sum_probs=44.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---CCeEEeeccccCCCC---CCCcccceEeccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPY---PSLSFDMLHCARCGV  328 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~lda~rLPF---pD~SFDlVhcs~~Li  328 (344)
                      .+|||||||+.                . .|.++.|++.|+++.   +.+..++  .+.+|+   ++++||+|+|..+++
T Consensus        14 ~~vL~~~~g~v----------------~-vD~s~~ml~~a~~~~~~~~~~~~~d--~~~~~~~~~~~~~fD~V~~~~~l~   74 (176)
T 2ld4_A           14 QFVAVVWDKSS----------------P-VEALKGLVDKLQALTGNEGRVSVEN--IKQLLQSAHKESSFDIILSGLVPG   74 (176)
T ss_dssp             SEEEEEECTTS----------------C-HHHHHHHHHHHHHHTTTTSEEEEEE--GGGGGGGCCCSSCEEEEEECCSTT
T ss_pred             CEEEEecCCce----------------e-eeCCHHHHHHHHHhcccCcEEEEec--hhcCccccCCCCCEeEEEECChhh
Confidence            58999999961                1 688999999988873   4445554  567888   899999999998885


Q ss_pred             cc
Q 019228          329 DW  330 (344)
Q Consensus       329 ~W  330 (344)
                      +.
T Consensus        75 ~~   76 (176)
T 2ld4_A           75 ST   76 (176)
T ss_dssp             CC
T ss_pred             hc
Confidence            44

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.62  E-value=0.00011  Score=70.67  Aligned_cols=71  Identities=17%  Similarity=0.091  Sum_probs=47.4

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc------CC---CeEEeeccccC-C-CCCCCcccceE
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GL---PAMIGSFASKQ-L-PYPSLSFDMLH  322 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR------Gv---pa~~~~lda~r-L-PFpD~SFDlVh  322 (344)
                      .++|||||||+|.++..|+++.- ...+...|+++.+++.|+++      ++   .+.+...|+.. + .+++++||+|+
T Consensus       121 ~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi  199 (334)
T 1xj5_A          121 PKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  199 (334)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence            46899999999999999988621 12455578888888877754      11   23332233333 2 24578999999


Q ss_pred             ecc
Q 019228          323 CAR  325 (344)
Q Consensus       323 cs~  325 (344)
                      +..
T Consensus       200 ~d~  202 (334)
T 1xj5_A          200 VDS  202 (334)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            953

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.62  E-value=6.6e-05  Score=65.73  Aligned_cols=60  Identities=13%  Similarity=0.170  Sum_probs=39.8

Q ss_pred             CeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCC--------C---CCcccce
Q 019228          255 RTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY--------P---SLSFDML  321 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPF--------p---D~SFDlV  321 (344)
                      .+|||+|||+|.++..|++++  |+++++.+...         ..++.+..+++  ..++.        +   .++||+|
T Consensus        27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~---------~~~v~~~~~D~--~~~~~~~~~~~~~~~~~~~~~D~V   95 (191)
T 3dou_A           27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE---------IAGVRFIRCDI--FKETIFDDIDRALREEGIEKVDDV   95 (191)
T ss_dssp             CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC---------CTTCEEEECCT--TSSSHHHHHHHHHHHHTCSSEEEE
T ss_pred             CEEEEEeecCCHHHHHHHHcCCcEEEEecccccc---------CCCeEEEEccc--cCHHHHHHHHHHhhcccCCcceEE
Confidence            589999999999999999874  44555443211         12455666654  34442        1   1499999


Q ss_pred             Eecc
Q 019228          322 HCAR  325 (344)
Q Consensus       322 hcs~  325 (344)
                      +|..
T Consensus        96 lsd~   99 (191)
T 3dou_A           96 VSDA   99 (191)
T ss_dssp             EECC
T ss_pred             ecCC
Confidence            9964

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.62  E-value=4e-05  Score=72.28  Aligned_cols=74  Identities=14%  Similarity=0.157  Sum_probs=50.3

Q ss_pred             CCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc------C----CCeEEeeccccC-CCCCCCcccce
Q 019228          254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER------G----LPAMIGSFASKQ-LPYPSLSFDML  321 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR------G----vpa~~~~lda~r-LPFpD~SFDlV  321 (344)
                      ..+|||||||+|.++..++++ .+  ..+...|+++.+++.|+++      +    ..+.+...|+.. ++..+++||+|
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            468999999999999999886 22  2445577888888777653      1    123333334443 56678999999


Q ss_pred             Eeccccccc
Q 019228          322 HCARCGVDW  330 (344)
Q Consensus       322 hcs~~Li~W  330 (344)
                      ++.... +|
T Consensus       156 i~d~~~-~~  163 (314)
T 1uir_A          156 IIDLTD-PV  163 (314)
T ss_dssp             EEECCC-CB
T ss_pred             EECCCC-cc
Confidence            997443 55

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.62  E-value=4.9e-05  Score=71.12  Aligned_cols=69  Identities=16%  Similarity=0.088  Sum_probs=47.2

Q ss_pred             CCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC---------CCeEEeeccccC-CCCCCCcccceE
Q 019228          254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH  322 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG---------vpa~~~~lda~r-LPFpD~SFDlVh  322 (344)
                      ..+|||||||+|.++..++++ ++  ..+...|+++.+++.|++.-         ..+.+...|+.. ++..+++||+|+
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            368999999999999999886 32  24455778888887776541         122222223333 566678999999


Q ss_pred             ec
Q 019228          323 CA  324 (344)
Q Consensus       323 cs  324 (344)
                      +.
T Consensus       169 ~d  170 (296)
T 1inl_A          169 ID  170 (296)
T ss_dssp             EE
T ss_pred             Ec
Confidence            85

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.60  E-value=2.4e-05  Score=68.27  Aligned_cols=71  Identities=14%  Similarity=0.018  Sum_probs=42.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccC----CCCCC--CcccceE
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ----LPYPS--LSFDMLH  322 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~r----LPFpD--~SFDlVh  322 (344)
                      .+|||||||+|.++..|++.--....+...|.++.+++.|+++    ++  .+.+...|+..    ++...  ++||+|+
T Consensus        71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~  150 (229)
T 2avd_A           71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAV  150 (229)
T ss_dssp             CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEE
T ss_pred             CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEE
Confidence            5899999999999999987510011334456666666666543    43  23222222222    21111  7899999


Q ss_pred             ecc
Q 019228          323 CAR  325 (344)
Q Consensus       323 cs~  325 (344)
                      +..
T Consensus       151 ~d~  153 (229)
T 2avd_A          151 VDA  153 (229)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            864

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.60  E-value=8.7e-05  Score=73.32  Aligned_cols=69  Identities=13%  Similarity=0.072  Sum_probs=48.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC-CeEEeeccccCCC--CCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv-pa~~~~lda~rLP--FpD~SFDlVhc  323 (344)
                      .+|||+|||+|..+..|++.--....+.+.|.++.+++.+.++    |+ .+.+...|+..++  |++++||+|++
T Consensus       261 ~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          261 ETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            5899999999999998887310001344568888887766654    55 3444445666776  77789999996

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.59  E-value=9.5e-05  Score=68.42  Aligned_cols=65  Identities=11%  Similarity=0.035  Sum_probs=46.5

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---------CCeEEeeccccCCCCCCCcccceEec
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---------vpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .++|||||||+|.++..+++++   ..+...|+++.+++.|+++-         ..+.+...|+...+   ++||+|++.
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            4689999999999999888773   35667888888888776531         12333333454443   899999986

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.58  E-value=7.5e-05  Score=70.96  Aligned_cols=70  Identities=13%  Similarity=0.109  Sum_probs=48.3

Q ss_pred             CCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHcC------C---CeEEeeccccC-CCCCCCcccceE
Q 019228          254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG------L---PAMIGSFASKQ-LPYPSLSFDMLH  322 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eRG------v---pa~~~~lda~r-LPFpD~SFDlVh  322 (344)
                      ..+|||||||+|.++..++++ ..  ..+...|+++.+++.|+++-      +   .+.+...|+.. ++..+++||+|+
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            368999999999999999876 22  24566788888888887651      1   12222223333 445578999999


Q ss_pred             ecc
Q 019228          323 CAR  325 (344)
Q Consensus       323 cs~  325 (344)
                      +..
T Consensus       195 ~d~  197 (321)
T 2pt6_A          195 VDS  197 (321)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            863

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.55  E-value=8.6e-05  Score=68.92  Aligned_cols=77  Identities=12%  Similarity=0.054  Sum_probs=50.8

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---------CCeEEeeccccC-CCCCCCcccceEe
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLHC  323 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---------vpa~~~~lda~r-LPFpD~SFDlVhc  323 (344)
                      ..+|||||||+|.++..++++.- ...+...|+++.+++.|+++-         ..+.+...|+.. ++..+++||+|++
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            46899999999999999987631 124566788888988887651         112232233333 3444789999999


Q ss_pred             cccccccCc
Q 019228          324 ARCGVDWDQ  332 (344)
Q Consensus       324 s~~Li~W~~  332 (344)
                      ... .++..
T Consensus       158 d~~-~~~~~  165 (283)
T 2i7c_A          158 DSS-DPIGP  165 (283)
T ss_dssp             ECC-CTTTG
T ss_pred             cCC-CCCCc
Confidence            533 34443

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.55  E-value=3.6e-05  Score=73.16  Aligned_cols=85  Identities=13%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC------CCeE
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAM  302 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG------vpa~  302 (344)
                      +....++.+.+.+....+        .+|||+|||+|.++..++++.- ...+.+.|.++.+++.|+++-      +.+.
T Consensus        10 h~pvLl~e~l~~L~~~~g--------~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v   80 (301)
T 1m6y_A           10 HIPVMVREVIEFLKPEDE--------KIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLF   80 (301)
T ss_dssp             CCCTTHHHHHHHHCCCTT--------CEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEE
T ss_pred             ccHHHHHHHHHhcCCCCC--------CEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence            344456677777765433        5899999999999999987621 124455788888888887752      2334


Q ss_pred             EeeccccCCC--CCC---CcccceEec
Q 019228          303 IGSFASKQLP--YPS---LSFDMLHCA  324 (344)
Q Consensus       303 ~~~lda~rLP--FpD---~SFDlVhcs  324 (344)
                      .++  ...||  +++   ++||.|++.
T Consensus        81 ~~d--~~~l~~~l~~~g~~~~D~Vl~D  105 (301)
T 1m6y_A           81 KVS--YREADFLLKTLGIEKVDGILMD  105 (301)
T ss_dssp             ECC--GGGHHHHHHHTTCSCEEEEEEE
T ss_pred             ECC--HHHHHHHHHhcCCCCCCEEEEc
Confidence            444  44555  222   689999874

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.54  E-value=1.4e-05  Score=72.69  Aligned_cols=68  Identities=15%  Similarity=0.081  Sum_probs=43.0

Q ss_pred             CeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccC-CCC------CCCcc
Q 019228          255 RTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LPY------PSLSF  318 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~r-LPF------pD~SF  318 (344)
                      ++|||||||+|..+..|++.   +.   .+...|.++.+++.|+++    ++.  +.+-..|+.. +|.      ++++|
T Consensus        81 ~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           81 KNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             CEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             CEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            58999999999999988764   22   334456666666666543    442  2222223332 343      27899


Q ss_pred             cceEecc
Q 019228          319 DMLHCAR  325 (344)
Q Consensus       319 DlVhcs~  325 (344)
                      |+|++..
T Consensus       158 D~V~~d~  164 (247)
T 1sui_A          158 DFIFVDA  164 (247)
T ss_dssp             SEEEECS
T ss_pred             EEEEEcC
Confidence            9999864

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.53  E-value=6.7e-05  Score=69.46  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=47.5

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc-----CC----------CeEEeeccccC-CCCCCCc
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GL----------PAMIGSFASKQ-LPYPSLS  317 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR-----Gv----------pa~~~~lda~r-LPFpD~S  317 (344)
                      ..+|||||||+|.++..+++++.  ..+...|+++.+++.|++.     ++          .+.+...|+.. ++. +++
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~  152 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG  152 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred             CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence            36899999999999999988732  2455678888888887764     11          12222223322 333 789


Q ss_pred             ccceEeccc
Q 019228          318 FDMLHCARC  326 (344)
Q Consensus       318 FDlVhcs~~  326 (344)
                      ||+|++...
T Consensus       153 fD~Ii~d~~  161 (281)
T 1mjf_A          153 FDVIIADST  161 (281)
T ss_dssp             EEEEEEECC
T ss_pred             eeEEEECCC
Confidence            999998643

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.53  E-value=4.8e-05  Score=68.87  Aligned_cols=70  Identities=13%  Similarity=0.054  Sum_probs=43.9

Q ss_pred             CeEEEECCccchhhHHHhhC-----CceEEEcccccccHHHHHHHHHcCCC--eEEeeccccC-CCCC-----CCcccce
Q 019228          255 RTILDIGCGYGSFGAHLFSK-----ELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQ-LPYP-----SLSFDML  321 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-----~V~~~sIa~~D~sea~Iq~A~eRGvp--a~~~~lda~r-LPFp-----D~SFDlV  321 (344)
                      ++|||||||+|..+..|++.     .|+++++.+..+..+.. .+.+.++.  +.+-..|+.. +|..     +++||+|
T Consensus        62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V  140 (242)
T 3r3h_A           62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP-YWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI  140 (242)
T ss_dssp             SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHH-HHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred             CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence            58999999999999998873     35666666655554442 23334442  3332233433 3432     6899999


Q ss_pred             Eecc
Q 019228          322 HCAR  325 (344)
Q Consensus       322 hcs~  325 (344)
                      ++..
T Consensus       141 ~~d~  144 (242)
T 3r3h_A          141 FIDA  144 (242)
T ss_dssp             EEES
T ss_pred             EEcC
Confidence            9864

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.53  E-value=9.5e-05  Score=70.62  Aligned_cols=73  Identities=12%  Similarity=0.055  Sum_probs=52.1

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      ..+|||+|||+|-|+..++...-. ..+.+.|+++.+++++.+.    |++..+...|. .++-+...||+|++.-++.
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~-a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~-~~~~p~~~~DvaL~lkti~  209 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAE-TVYIASDIDARLVGFVDEALTRLNVPHRTNVADL-LEDRLDEPADVTLLLKTLP  209 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTT-CEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCT-TTSCCCSCCSEEEETTCHH
T ss_pred             CceeeeeccCccHHHHHHHhhCCC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeee-cccCCCCCcchHHHHHHHH
Confidence            568999999999999888765211 1345578888888877654    67765555443 3455788899999876653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.52  E-value=7.9e-05  Score=68.80  Aligned_cols=83  Identities=11%  Similarity=0.059  Sum_probs=52.8

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC---CeEEeecc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFA  307 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv---pa~~~~ld  307 (344)
                      ...++.|.+.+....+        .+|||||||+|.++. |... .. ..+.+.|+++.+++.++++--   .+.+-..|
T Consensus         7 ~~i~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~-l~~~-~~-~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D   75 (252)
T 1qyr_A            7 QFVIDSIVSAINPQKG--------QAMVEIGPGLAALTE-PVGE-RL-DQLTVIELDRDLAARLQTHPFLGPKLTIYQQD   75 (252)
T ss_dssp             HHHHHHHHHHHCCCTT--------CCEEEECCTTTTTHH-HHHT-TC-SCEEEECCCHHHHHHHHTCTTTGGGEEEECSC
T ss_pred             HHHHHHHHHhcCCCCc--------CEEEEECCCCcHHHH-hhhC-CC-CeEEEEECCHHHHHHHHHHhccCCceEEEECc
Confidence            3456777777765432        479999999999999 6542 11 013446888888888877521   23333345


Q ss_pred             ccCCCCCCC-----cccceEec
Q 019228          308 SKQLPYPSL-----SFDMLHCA  324 (344)
Q Consensus       308 a~rLPFpD~-----SFDlVhcs  324 (344)
                      +..++|++.     ..|.|+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~vvsN   97 (252)
T 1qyr_A           76 AMTFNFGELAEKMGQPLRVFGN   97 (252)
T ss_dssp             GGGCCHHHHHHHHTSCEEEEEE
T ss_pred             hhhCCHHHhhcccCCceEEEEC
Confidence            677887653     24566665

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.52  E-value=0.00014  Score=70.24  Aligned_cols=68  Identities=13%  Similarity=0.116  Sum_probs=45.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC---CeEEeeccccCC-CC---CCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-PY---PSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv---pa~~~~lda~rL-PF---pD~SFDlVhc  323 (344)
                      .+|||+|||+|.++..++..+.  ..+.+.|+++.+++.|++.    ++   .+.+-..|+..+ +.   .+++||+|++
T Consensus       222 ~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~  299 (396)
T 3c0k_A          222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_dssp             CEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence            5899999999999999998752  1344567777777766543    55   233333344333 21   2578999999


Q ss_pred             c
Q 019228          324 A  324 (344)
Q Consensus       324 s  324 (344)
                      .
T Consensus       300 d  300 (396)
T 3c0k_A          300 D  300 (396)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.52  E-value=8.8e-05  Score=70.10  Aligned_cols=72  Identities=11%  Similarity=0.067  Sum_probs=47.9

Q ss_pred             CeEEEECCccchhhHHHhhCCc----eEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKEL----LTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V----~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      .+|||+|||+|.++..++++..    ....+.+.|+++.+++.|+..    |+.+.+...|+.. +.+++.||+|++.--
T Consensus       132 ~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~NPP  210 (344)
T 2f8l_A          132 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDLP  210 (344)
T ss_dssp             EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEECC
T ss_pred             CEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEECCC
Confidence            5899999999999887765411    013556678888777777653    5444333334433 456789999999855


Q ss_pred             c
Q 019228          327 G  327 (344)
Q Consensus       327 L  327 (344)
                      .
T Consensus       211 f  211 (344)
T 2f8l_A          211 V  211 (344)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.52  E-value=6.5e-05  Score=73.56  Aligned_cols=68  Identities=13%  Similarity=0.169  Sum_probs=44.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCeEEeeccccCCC--CCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLP--YPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~~~lda~rLP--FpD~SFDlVhc  323 (344)
                      .+|||+|||+|.++..|++..-. ..+.+.|.++.+++.+.+    .|+.+.+...|+..++  |++++||+|++
T Consensus       248 ~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          248 EHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEE
Confidence            58999999999999998874210 123334555554444443    3555444445666776  77889999995

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.51  E-value=0.00012  Score=70.42  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=48.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC-CeEEeeccccC-CCC-CCCcccceEecc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPY-PSLSFDMLHCAR  325 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv-pa~~~~lda~r-LPF-pD~SFDlVhcs~  325 (344)
                      .+|||+| |+|.++..++..+.. ..+.+.|+++.+++.|+++    |+ .+.+-..|... ||. .+++||+|++..
T Consensus       174 ~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          174 KDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             CEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            5899999 999999988775321 1345578888888877664    54 33333335556 775 578999999974

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.49  E-value=0.00015  Score=69.16  Aligned_cols=75  Identities=20%  Similarity=0.264  Sum_probs=51.1

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc-------CCCeEEeeccccCCCCCCCcccceEec
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR-------Gvpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .++|||||||+|.++..|+++  ++.+   ...|. +.+++.|+++       ++.++.+++  ...|++  .+|+|++.
T Consensus       180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~---~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~--~~~~~~--~~D~~~~~  251 (353)
T 4a6d_A          180 FPLMCDLGGGAGALAKECMSLYPGCKI---TVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDF--FKDPLP--EADLYILA  251 (353)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCSSCEE---EEEEC-HHHHHHHHHHSCC--CCSEEEEESCT--TTSCCC--CCSEEEEE
T ss_pred             CCeEEeeCCCCCHHHHHHHHhCCCcee---EeccC-HHHHHHHHHhhhhcccCceeeecCcc--ccCCCC--CceEEEee
Confidence            468999999999999999886  3322   23444 4566666654       133444543  344555  47999999


Q ss_pred             ccccccCccccc
Q 019228          325 RCGVDWDQKGKC  336 (344)
Q Consensus       325 ~~Li~W~~~~g~  336 (344)
                      .+|++|.+.+-.
T Consensus       252 ~vlh~~~d~~~~  263 (353)
T 4a6d_A          252 RVLHDWADGKCS  263 (353)
T ss_dssp             SSGGGSCHHHHH
T ss_pred             eecccCCHHHHH
Confidence            999999876543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.48  E-value=3.9e-05  Score=70.96  Aligned_cols=68  Identities=18%  Similarity=0.201  Sum_probs=45.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccH-------HHHHHHHHc----C----CCeEEeeccccC-CC-CCC--
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASG-------SQVQLTLER----G----LPAMIGSFASKQ-LP-YPS--  315 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~se-------a~Iq~A~eR----G----vpa~~~~lda~r-LP-FpD--  315 (344)
                      .+|||+|||+|.++..|+.++.   .+.+.|.++       .+++.|++.    +    +.+..++  +.. ++ +++  
T Consensus        85 ~~VLDlgcG~G~~a~~lA~~g~---~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d--~~~~l~~~~~~~  159 (258)
T 2r6z_A           85 PTVWDATAGLGRDSFVLASLGL---TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGN--AAEQMPALVKTQ  159 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHTTC---CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESC--HHHHHHHHHHHH
T ss_pred             CeEEEeeCccCHHHHHHHHhCC---EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECC--HHHHHHhhhccC
Confidence            4799999999999999998753   233456666       666666542    2    3344444  444 34 566  


Q ss_pred             CcccceEecccc
Q 019228          316 LSFDMLHCARCG  327 (344)
Q Consensus       316 ~SFDlVhcs~~L  327 (344)
                      ++||+|++.-..
T Consensus       160 ~~fD~V~~dP~~  171 (258)
T 2r6z_A          160 GKPDIVYLDPMY  171 (258)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCccEEEECCCC
Confidence            899999996443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.47  E-value=0.00052  Score=65.14  Aligned_cols=63  Identities=11%  Similarity=0.113  Sum_probs=43.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++.. +....   .+.+.|.++.+++.|++.    ++  .+.+-..|+..++   ++||+|++.
T Consensus       197 ~~VLDlg~G~G~~~l~-a~~~~---~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~d  265 (336)
T 2yx1_A          197 DVVVDMFAGVGPFSIA-CKNAK---KIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMN  265 (336)
T ss_dssp             CEEEETTCTTSHHHHH-TTTSS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEEC
T ss_pred             CEEEEccCccCHHHHh-ccCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEEC
Confidence            5899999999999999 77432   344567777777666543    44  2333333455554   899999985

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.46  E-value=8.6e-05  Score=70.61  Aligned_cols=71  Identities=14%  Similarity=0.091  Sum_probs=49.4

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC------C---CeEEeeccccC-CCCCCCcccceEe
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------L---PAMIGSFASKQ-LPYPSLSFDMLHC  323 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG------v---pa~~~~lda~r-LPFpD~SFDlVhc  323 (344)
                      ..+|||||||+|.++..++++.- ...+...|+++.+++.|+++-      +   .+.+...|+.. ++.++++||+|++
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            46899999999999999987621 124566788999998887651      1   13333333433 4556889999998


Q ss_pred             cc
Q 019228          324 AR  325 (344)
Q Consensus       324 s~  325 (344)
                      ..
T Consensus       188 d~  189 (314)
T 2b2c_A          188 DS  189 (314)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.46  E-value=2.1e-05  Score=74.45  Aligned_cols=68  Identities=16%  Similarity=0.147  Sum_probs=39.9

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEc----ccccccHHHHHHHHHcCCC-eEEeec-cccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCI----ANYEASGSQVQLTLERGLP-AMIGSF-ASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sI----a~~D~sea~Iq~A~eRGvp-a~~~~l-da~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++..|+++ .|+++++    ...++....   +...+.+ +.+... |...+  ++++||+|+|..+.
T Consensus        84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l--~~~~fD~V~sd~~~  158 (305)
T 2p41_A           84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFI--PPERCDTLLCDIGE  158 (305)
T ss_dssp             EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTS--CCCCCSEEEECCCC
T ss_pred             CEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccC--CcCCCCEEEECCcc
Confidence            58999999999999999887 4666665    221111000   0011112 222222 44444  46799999996543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.45  E-value=8.1e-05  Score=71.70  Aligned_cols=67  Identities=13%  Similarity=0.083  Sum_probs=47.8

Q ss_pred             eEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHcC-C----CeEEeeccccCC--CCCCCcccceEecc
Q 019228          256 TILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLERG-L----PAMIGSFASKQL--PYPSLSFDMLHCAR  325 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eRG-v----pa~~~~lda~rL--PFpD~SFDlVhcs~  325 (344)
                      +|||||||+|.++..|+++  ++   .+...|+++.+++.|+++- .    .+.+-..|+...  .+++++||+|++..
T Consensus        92 rVLdIG~G~G~la~~la~~~p~~---~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           92 RITHLGGGACTMARYFADVYPQS---RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             EEEEESCGGGHHHHHHHHHSTTC---EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred             EEEEEECCcCHHHHHHHHHCCCc---EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence            8999999999999999883  43   4456789999999988752 1    122322334332  45789999999863

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.44  E-value=5e-05  Score=76.50  Aligned_cols=69  Identities=20%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCC-CCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLP-FpD~SFDlVhc  323 (344)
                      .+|||+|||+|..+..|+++--....+.+.|+++.+++.++++    |+.+.+...|+..++ +.+++||+|++
T Consensus       103 ~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A          103 ERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             CEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             CEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEE
Confidence            5899999999999998886410001344568888887766654    655444444566666 56789999995

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.44  E-value=7.9e-05  Score=63.10  Aligned_cols=20  Identities=25%  Similarity=0.411  Sum_probs=18.0

Q ss_pred             CeEEEECCccchhhHHHhhC
Q 019228          255 RTILDIGCGYGSFGAHLFSK  274 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer  274 (344)
                      .+|||+|||+|.++..|+++
T Consensus        24 ~~vLDlGcG~G~~~~~la~~   43 (196)
T 2nyu_A           24 LRVLDCGAAPGAWSQVAVQK   43 (196)
T ss_dssp             CEEEEETCCSCHHHHHHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHH
Confidence            58999999999999988875

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.44  E-value=9.6e-05  Score=72.53  Aligned_cols=67  Identities=15%  Similarity=0.059  Sum_probs=45.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccC-CCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQ-LPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~r-LPFpD~SFDlVhcs  324 (344)
                      .+|||+|||||.++..++..+..   +.+.|+++.+++.|++.    ++...+...|+.. ++...+.||+|++.
T Consensus       216 ~~VLDlg~GtG~~sl~~a~~ga~---V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          216 ERVLDVYSYVGGFALRAARKGAY---ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             CEEEEESCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             CeEEEcccchhHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEEC
Confidence            58999999999999999987643   45578888888776654    5543222334433 23324449999985

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.42  E-value=0.00012  Score=71.49  Aligned_cols=69  Identities=16%  Similarity=0.245  Sum_probs=45.7

Q ss_pred             CeEEEECCccchhhHHHhhC--Cc-----------------------------------eEEEcccccccHHHHHHHHHc
Q 019228          255 RTILDIGCGYGSFGAHLFSK--EL-----------------------------------LTMCIANYEASGSQVQLTLER  297 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V-----------------------------------~~~sIa~~D~sea~Iq~A~eR  297 (344)
                      ..+||.+||+|+|+..++..  ++                                   ....+.+.|+++.+++.|++.
T Consensus       197 ~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~N  276 (385)
T 3ldu_A          197 RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAREN  276 (385)
T ss_dssp             SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHH
T ss_pred             CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHH
Confidence            57999999999998665432  10                                   002345567777777776653


Q ss_pred             ----CCC--eEEeeccccCCCCCCCcccceEec
Q 019228          298 ----GLP--AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       298 ----Gvp--a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                          |+.  +.+...|...++.+ .+||+|+|.
T Consensus       277 a~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~N  308 (385)
T 3ldu_A          277 AEIAGVDEYIEFNVGDATQFKSE-DEFGFIITN  308 (385)
T ss_dssp             HHHHTCGGGEEEEECCGGGCCCS-CBSCEEEEC
T ss_pred             HHHcCCCCceEEEECChhhcCcC-CCCcEEEEC
Confidence                553  44444466677765 499999995

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.39  E-value=0.00059  Score=64.31  Aligned_cols=99  Identities=10%  Similarity=0.119  Sum_probs=62.3

Q ss_pred             cccceeeecCCCcccc-chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHH
Q 019228          213 LEEEQISFRSASLIFD-GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV  291 (344)
Q Consensus       213 ~eg~~~~FpGggt~F~-g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~I  291 (344)
                      +.|-++.|.-.-+||+ +...-...|.+++..  |        .+|||+|||+|.|+..++.++..  .+.+.|+++..+
T Consensus        94 E~G~~~~~D~~k~~f~~~~~~er~ri~~~~~~--g--------~~VlD~~aG~G~~~i~~a~~g~~--~V~avD~np~a~  161 (278)
T 3k6r_A           94 ENGIKYKLDVAKIMFSPANVKERVRMAKVAKP--D--------ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTF  161 (278)
T ss_dssp             ETTEEEEEETTTSCCCGGGHHHHHHHHHHCCT--T--------CEEEETTCTTTTTTHHHHHHTCC--EEEEECCCHHHH
T ss_pred             ECCEEEEEeccceEEcCCcHHHHHHHHHhcCC--C--------CEEEEecCcCcHHHHHHHHhcCC--eEEEEECCHHHH
Confidence            3455555555556773 444445567666542  2        58999999999999988876421  234467777766


Q ss_pred             HHHHHc----CCC--eEEeeccccCCCCCCCcccceEec
Q 019228          292 QLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       292 q~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      +.+++.    ++.  +.+-..|+..++ +.+.||.|++.
T Consensus       162 ~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~  199 (278)
T 3k6r_A          162 KFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMG  199 (278)
T ss_dssp             HHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred             HHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEEC
Confidence            665542    443  333344666665 46789999875

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.38  E-value=0.00026  Score=67.95  Aligned_cols=54  Identities=15%  Similarity=0.116  Sum_probs=36.3

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE  296 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e  296 (344)
                      ...++.+.+.+...         ..+|||+|||+|.|+..|++...   .+.+.|.++.+++.|++
T Consensus       200 ~~l~~~~~~~~~~~---------~~~vLDl~cG~G~~~l~la~~~~---~V~gvd~~~~ai~~a~~  253 (369)
T 3bt7_A          200 IQMLEWALDVTKGS---------KGDLLELYCGNGNFSLALARNFD---RVLATEIAKPSVAAAQY  253 (369)
T ss_dssp             HHHHHHHHHHTTTC---------CSEEEEESCTTSHHHHHHGGGSS---EEEEECCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcC---------CCEEEEccCCCCHHHHHHHhcCC---EEEEEECCHHHHHHHHH
Confidence            44556666665432         14799999999999999987532   33446777777766654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.37  E-value=5.2e-05  Score=72.37  Aligned_cols=87  Identities=10%  Similarity=0.114  Sum_probs=49.0

Q ss_pred             CccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEE
Q 019228          224 SLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI  303 (344)
Q Consensus       224 gt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~  303 (344)
                      |.+|.. ...++.+.+++....        ..+|||+|||+|.|+..++++-.....+.+.|+++.+++.|  ..+.+..
T Consensus        19 g~~~TP-~~l~~~~~~~~~~~~--------~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--~~~~~~~   87 (421)
T 2ih2_A           19 GRVETP-PEVVDFMVSLAEAPR--------GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--PWAEGIL   87 (421)
T ss_dssp             --CCCC-HHHHHHHHHHCCCCT--------TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--TTEEEEE
T ss_pred             ceEeCC-HHHHHHHHHhhccCC--------CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--CCCcEEe
Confidence            444432 345667777765321        24899999999999998886300001223344444444434  2344445


Q ss_pred             eeccccCCCCCCCcccceEec
Q 019228          304 GSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhcs  324 (344)
                      ++  ....+ +++.||+|+|+
T Consensus        88 ~D--~~~~~-~~~~fD~Ii~N  105 (421)
T 2ih2_A           88 AD--FLLWE-PGEAFDLILGN  105 (421)
T ss_dssp             SC--GGGCC-CSSCEEEEEEC
T ss_pred             CC--hhhcC-ccCCCCEEEEC
Confidence            54  33333 45789999995

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.32  E-value=0.00017  Score=72.62  Aligned_cols=68  Identities=18%  Similarity=0.247  Sum_probs=48.1

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCC-CCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPY-PSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPF-pD~SFDlVhc  323 (344)
                      .+|||+|||+|..+..|++. +-. ..+.+.|+++.+++.+.++    |+. +.+-..|+..++. .+++||.|+|
T Consensus       119 ~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          119 QRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             SEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            58999999999999998874 100 1344578888887776654    553 4444456677765 6789999997

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.32  E-value=0.00026  Score=74.31  Aligned_cols=68  Identities=15%  Similarity=0.100  Sum_probs=47.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC---eEEeeccccC-CCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQ-LPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp---a~~~~lda~r-LPFpD~SFDlVhcs  324 (344)
                      .+|||+|||||.|+..++..+..  .+...|+++.+++.|++.    ++.   +.+-..|+.. |+..+++||+|++.
T Consensus       541 ~~VLDlg~GtG~~sl~aa~~ga~--~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          541 KDFLNLFSYTGSATVHAGLGGAR--STTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             CcEEEeeechhHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            58999999999999998876542  344567787777777653    443   3333333433 56677899999985

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.30  E-value=0.00033  Score=67.90  Aligned_cols=68  Identities=13%  Similarity=0.199  Sum_probs=41.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC---eEEeeccccC-CCC---CCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP---AMIGSFASKQ-LPY---PSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp---a~~~~lda~r-LPF---pD~SFDlVhc  323 (344)
                      .+|||+|||+|.++..++.++..  .+.+.|.++.+++.|++    .++.   +.+-..|+.. ++.   ..++||+|++
T Consensus       214 ~~VLDl~cGtG~~sl~la~~ga~--~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~  291 (385)
T 2b78_A          214 KTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  291 (385)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CeEEEEeeccCHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence            58999999999999999986431  22334555555555443    3442   3333333333 332   2568999998


Q ss_pred             c
Q 019228          324 A  324 (344)
Q Consensus       324 s  324 (344)
                      .
T Consensus       292 D  292 (385)
T 2b78_A          292 D  292 (385)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.29  E-value=0.00012  Score=70.63  Aligned_cols=67  Identities=19%  Similarity=0.169  Sum_probs=45.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCC----CCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPY----PSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPF----pD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++..   +..+.+.|+++.+++.|++.    ++. +.+-..|+..+..    .+++||+|++.
T Consensus       211 ~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          211 ERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             EEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            47999999999999999876   23555677888877776654    443 3333334433321    26799999984

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.28  E-value=5.7e-05  Score=67.81  Aligned_cols=67  Identities=12%  Similarity=0.023  Sum_probs=43.4

Q ss_pred             CeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccC-CCC------CCCcc
Q 019228          255 RTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LPY------PSLSF  318 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~r-LPF------pD~SF  318 (344)
                      ++|||||||+|..+..|++.   +.   .+...|.++.+++.|++.    |+.  +.+...|+.. +|.      ++++|
T Consensus        72 ~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           72 KKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             CEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             CEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            58999999999999888764   22   344467777777776543    442  2222223322 232      36899


Q ss_pred             cceEec
Q 019228          319 DMLHCA  324 (344)
Q Consensus       319 DlVhcs  324 (344)
                      |+|++.
T Consensus       149 D~I~~d  154 (237)
T 3c3y_A          149 DFGFVD  154 (237)
T ss_dssp             EEEEEC
T ss_pred             CEEEEC
Confidence            999975

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.27  E-value=0.00038  Score=68.20  Aligned_cols=69  Identities=12%  Similarity=0.252  Sum_probs=44.5

Q ss_pred             CeEEEECCccchhhHHHhh--CCc-----------------------------------eEEEcccccccHHHHHHHHHc
Q 019228          255 RTILDIGCGYGSFGAHLFS--KEL-----------------------------------LTMCIANYEASGSQVQLTLER  297 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Lae--r~V-----------------------------------~~~sIa~~D~sea~Iq~A~eR  297 (344)
                      ..+||.+||+|+|+...+.  .++                                   ....+.+.|+++.+++.|++.
T Consensus       203 ~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~N  282 (393)
T 3k0b_A          203 RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQN  282 (393)
T ss_dssp             SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHH
T ss_pred             CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHH
Confidence            5799999999999755433  220                                   001244567777777766643


Q ss_pred             ----CCC--eEEeeccccCCCCCCCcccceEec
Q 019228          298 ----GLP--AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       298 ----Gvp--a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                          |+.  +.+...|...+++++ +||+|+|+
T Consensus       283 a~~~gl~~~I~~~~~D~~~~~~~~-~fD~Iv~N  314 (393)
T 3k0b_A          283 AVEAGLGDLITFRQLQVADFQTED-EYGVVVAN  314 (393)
T ss_dssp             HHHTTCTTCSEEEECCGGGCCCCC-CSCEEEEC
T ss_pred             HHHcCCCCceEEEECChHhCCCCC-CCCEEEEC
Confidence                543  333334567787764 99999997

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.26  E-value=0.00013  Score=70.35  Aligned_cols=68  Identities=15%  Similarity=0.092  Sum_probs=45.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCC-CC---CCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-PY---PSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rL-PF---pD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++..+..  .+.+.|+++.+++.|++.    ++  .+.+-..|+..+ +.   ++++||+|++.
T Consensus       219 ~~VLDl~~G~G~~~~~la~~g~~--~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d  296 (396)
T 2as0_A          219 DRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  296 (396)
T ss_dssp             CEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence            58999999999999999987421  344467777777666543    44  233333344333 21   36799999984

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.26  E-value=0.00015  Score=72.69  Aligned_cols=64  Identities=16%  Similarity=0.275  Sum_probs=41.1

Q ss_pred             CCeEEEECCc------cchhhHHHhhC-----CceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCC------CC
Q 019228          254 VRTILDIGCG------YGSFGAHLFSK-----ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP------SL  316 (344)
Q Consensus       254 ir~VLDVGCG------tGsfaa~Laer-----~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFp------D~  316 (344)
                      ..+|||||||      ||..+..++++     .|+++++.+.     |.  +....+.+.++  |+..+||.      ++
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~-----m~--~~~~rI~fv~G--Da~dlpf~~~l~~~d~  287 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDK-----SH--VDELRIRTIQG--DQNDAEFLDRIARRYG  287 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCC-----GG--GCBTTEEEEEC--CTTCHHHHHHHHHHHC
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHH-----Hh--hcCCCcEEEEe--cccccchhhhhhcccC
Confidence            3589999999      76666666542     3555554444     32  11123434444  57789998      89


Q ss_pred             cccceEeccc
Q 019228          317 SFDMLHCARC  326 (344)
Q Consensus       317 SFDlVhcs~~  326 (344)
                      +||+|+|..+
T Consensus       288 sFDlVisdgs  297 (419)
T 3sso_A          288 PFDIVIDDGS  297 (419)
T ss_dssp             CEEEEEECSC
T ss_pred             CccEEEECCc
Confidence            9999999643

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.20  E-value=0.00013  Score=72.54  Aligned_cols=67  Identities=18%  Similarity=0.073  Sum_probs=44.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc------CCC-eEEeeccccC-CCC-CCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLP-AMIGSFASKQ-LPY-PSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR------Gvp-a~~~~lda~r-LPF-pD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..|+..+.   .+.+.|.++.+++.|++.      |+. +.+-..|+.. |+. ++++||+|++.
T Consensus        95 ~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           95 TKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             CEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            5899999999999999988753   334467777777666543      542 2232234443 343 45789999985

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.20  E-value=0.00062  Score=67.22  Aligned_cols=79  Identities=20%  Similarity=0.201  Sum_probs=46.6

Q ss_pred             CeEEEECCccchhhHHHhhC-------C---------ceEEEccccccc-----------HHHHHHHH-HcC--C-Ce-E
Q 019228          255 RTILDIGCGYGSFGAHLFSK-------E---------LLTMCIANYEAS-----------GSQVQLTL-ERG--L-PA-M  302 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-------~---------V~~~sIa~~D~s-----------ea~Iq~A~-eRG--v-pa-~  302 (344)
                      -+|+|+||++|..+..+++.       .         ..-+.+...|+.           +...+... +.|  . +. .
T Consensus        54 ~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~  133 (384)
T 2efj_A           54 FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLI  133 (384)
T ss_dssp             EEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEE
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEE
Confidence            47999999999887655432       0         112344444443           22222222 223  2 22 2


Q ss_pred             Eeeccc-cCCCCCCCcccceEecccccccCccc
Q 019228          303 IGSFAS-KQLPYPSLSFDMLHCARCGVDWDQKG  334 (344)
Q Consensus       303 ~~~lda-~rLPFpD~SFDlVhcs~~Li~W~~~~  334 (344)
                      .++..+ ..-.||++|||+|||+.+| ||..+-
T Consensus       134 ~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~  165 (384)
T 2efj_A          134 GAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQV  165 (384)
T ss_dssp             EECCSCTTSCCSCTTCEEEEEEESCT-TBCSSS
T ss_pred             EecchhhhhccCCCCceEEEEeccee-eecCCC
Confidence            333211 2467999999999999999 998754

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.14  E-value=0.00029  Score=69.25  Aligned_cols=23  Identities=22%  Similarity=0.405  Sum_probs=19.9

Q ss_pred             CCCCCCcccceEecccccccCccc
Q 019228          311 LPYPSLSFDMLHCARCGVDWDQKG  334 (344)
Q Consensus       311 LPFpD~SFDlVhcs~~Li~W~~~~  334 (344)
                      -.||++|||+|||+.+| ||..+-
T Consensus       144 rlfP~~S~d~v~Ss~aL-HWls~~  166 (374)
T 3b5i_A          144 RLFPARTIDFFHSAFSL-HWLSQV  166 (374)
T ss_dssp             CCSCTTCEEEEEEESCT-TBCSSC
T ss_pred             ccCCCcceEEEEeccee-eeeccC
Confidence            35999999999999999 998743

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.10  E-value=0.00018  Score=72.34  Aligned_cols=69  Identities=19%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCC-CCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLP-FpD~SFDlVhcs  324 (344)
                      .+|||+|||+|..+..|++. +-. -.+.+.|+++.+++.+.++    |+. +.+...|+..++ +.+++||+|++.
T Consensus       107 ~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          107 EKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            58999999999999888764 100 1234467787777666543    554 334334566665 457899999973

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.09  E-value=0.00087  Score=65.60  Aligned_cols=69  Identities=16%  Similarity=0.335  Sum_probs=45.1

Q ss_pred             CeEEEECCccchhhHHHhh--CCc-----------------------------------eEEEcccccccHHHHHHHHHc
Q 019228          255 RTILDIGCGYGSFGAHLFS--KEL-----------------------------------LTMCIANYEASGSQVQLTLER  297 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Lae--r~V-----------------------------------~~~sIa~~D~sea~Iq~A~eR  297 (344)
                      ..+||.+||+|+|+...+.  .++                                   ....+.+.|.++.+++.|++.
T Consensus       196 ~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~N  275 (384)
T 3ldg_A          196 KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKN  275 (384)
T ss_dssp             SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHH
T ss_pred             CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHH
Confidence            5799999999999755432  220                                   001345567777777766543


Q ss_pred             ----CCC--eEEeeccccCCCCCCCcccceEec
Q 019228          298 ----GLP--AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       298 ----Gvp--a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                          |+.  +.+...|...++.++ +||+|+|.
T Consensus       276 a~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~N  307 (384)
T 3ldg_A          276 AREVGLEDVVKLKQMRLQDFKTNK-INGVLISN  307 (384)
T ss_dssp             HHHTTCTTTEEEEECCGGGCCCCC-CSCEEEEC
T ss_pred             HHHcCCCCceEEEECChHHCCccC-CcCEEEEC
Confidence                553  444444667788765 89999996

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=96.97  E-value=0.0015  Score=64.12  Aligned_cols=91  Identities=18%  Similarity=0.229  Sum_probs=52.4

Q ss_pred             CCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC----C--------ceEEEcccccccHHH
Q 019228          223 ASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK----E--------LLTMCIANYEASGSQ  290 (344)
Q Consensus       223 ggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer----~--------V~~~sIa~~D~sea~  290 (344)
                      .|.+|.- ...++.|.+++....        ..+|||.|||+|.|...+++.    .        +....+.+.|+++.+
T Consensus       150 ~G~fyTP-~~v~~~mv~~l~~~~--------~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~  220 (445)
T 2okc_A          150 AGQYFTP-RPLIQAMVDCINPQM--------GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLV  220 (445)
T ss_dssp             CGGGCCC-HHHHHHHHHHHCCCT--------TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHH
T ss_pred             CCcccCc-HHHHHHHHHHhCCCC--------CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHH
Confidence            3455532 234666777765332        247999999999998765542    0        000123345566666


Q ss_pred             HHHHHH----cCC-----CeEEeeccccCCCCCCCcccceEecc
Q 019228          291 VQLTLE----RGL-----PAMIGSFASKQLPYPSLSFDMLHCAR  325 (344)
Q Consensus       291 Iq~A~e----RGv-----pa~~~~lda~rLPFpD~SFDlVhcs~  325 (344)
                      ++.|+.    +|+     .+..+  |+...+.. ..||+|+++-
T Consensus       221 ~~lA~~nl~l~g~~~~~~~i~~g--D~l~~~~~-~~fD~Iv~NP  261 (445)
T 2okc_A          221 VTLASMNLYLHGIGTDRSPIVCE--DSLEKEPS-TLVDVILANP  261 (445)
T ss_dssp             HHHHHHHHHHTTCCSSCCSEEEC--CTTTSCCS-SCEEEEEECC
T ss_pred             HHHHHHHHHHhCCCcCCCCEeeC--CCCCCccc-CCcCEEEECC
Confidence            665543    354     23444  45555544 3899999974

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.89  E-value=0.00063  Score=66.56  Aligned_cols=78  Identities=17%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             CeEEEECCccchhhHHHhhC---------------CceEEEcccccccHHHHHHHHHc--------CCCeEEeeccc-cC
Q 019228          255 RTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGSQVQLTLER--------GLPAMIGSFAS-KQ  310 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer---------------~V~~~sIa~~D~sea~Iq~A~eR--------Gvpa~~~~lda-~r  310 (344)
                      -+|+|+||++|..+..+.+.               ...-+.+...|+..+.-+.....        +.-+..++..+ ..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~  132 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhh
Confidence            36999999999777654433               11223333334333221111111        11122333221 24


Q ss_pred             CCCCCCcccceEecccccccCcc
Q 019228          311 LPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       311 LPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      ..||++|||+|||+.+| ||..+
T Consensus       133 rlfp~~S~d~v~Ss~aL-HWls~  154 (359)
T 1m6e_X          133 RLFPRNTLHFIHSSYSL-MWLSQ  154 (359)
T ss_dssp             CCSCTTCBSCEEEESCT-TBCSS
T ss_pred             ccCCCCceEEEEehhhh-hhccc
Confidence            67999999999999999 99876

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=96.88  E-value=0.0012  Score=62.78  Aligned_cols=68  Identities=9%  Similarity=0.061  Sum_probs=44.0

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC-eEEeeccccCCCCCC---CcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPS---LSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda~rLPFpD---~SFDlVhc  323 (344)
                      .+|||+|||+|..+..|++. +-. -.+...|.++.+++.++++    |+. +.+-..|+..++..+   ++||.|++
T Consensus       104 ~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~  180 (309)
T 2b9e_A          104 SHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL  180 (309)
T ss_dssp             CEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence            58999999999999988873 100 1234467777776665543    553 333334566665443   58999996

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.58  E-value=0.00079  Score=64.14  Aligned_cols=90  Identities=12%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-C---ceEEEcccccccHHHHHHHHHcCCCeEE
Q 019228          228 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-E---LLTMCIANYEASGSQVQLTLERGLPAMI  303 (344)
Q Consensus       228 ~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~---V~~~sIa~~D~sea~Iq~A~eRGvpa~~  303 (344)
                      ..+..-+.+|.+..-+..        ..+|||+|||+|.|+.+.+++ +   +.++.+. .|+....+.. ...+..+..
T Consensus        57 SRaA~KL~ei~ek~~l~~--------~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVG-vDl~~~pi~~-~~~g~~ii~  126 (277)
T 3evf_A           57 SRGTAKLRWFHERGYVKL--------EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLG-RDGHEKPMNV-QSLGWNIIT  126 (277)
T ss_dssp             STHHHHHHHHHHTTSSCC--------CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC-CTTCCCCCCC-CBTTGGGEE
T ss_pred             ccHHHHHHHHHHhCCCCC--------CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEe-ccCccccccc-CcCCCCeEE
Confidence            344555666666533322        247999999999999988765 3   3333333 2322110000 001222222


Q ss_pred             eeccccCCCCCCCcccceEecccc
Q 019228          304 GSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      ...+.+-.+|+++.||+|+|-.+.
T Consensus       127 ~~~~~dv~~l~~~~~DlVlsD~ap  150 (277)
T 3evf_A          127 FKDKTDIHRLEPVKCDTLLCDIGE  150 (277)
T ss_dssp             EECSCCTTTSCCCCCSEEEECCCC
T ss_pred             EeccceehhcCCCCccEEEecCcc
Confidence            222234467889999999997643

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.45  E-value=0.0046  Score=64.89  Aligned_cols=45  Identities=13%  Similarity=0.175  Sum_probs=28.8

Q ss_pred             EcccccccHHHHHHHHH----cCCC--eEEeeccccCC--CCCCCcccceEec
Q 019228          280 CIANYEASGSQVQLTLE----RGLP--AMIGSFASKQL--PYPSLSFDMLHCA  324 (344)
Q Consensus       280 sIa~~D~sea~Iq~A~e----RGvp--a~~~~lda~rL--PFpD~SFDlVhcs  324 (344)
                      .+.+.|+++.+++.|++    .|+.  +.+...|+..+  |+++++||+|+|+
T Consensus       258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N  310 (703)
T 3v97_A          258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN  310 (703)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred             cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence            35567777777776654    3554  33333345555  6666699999996

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=96.43  E-value=0.0015  Score=60.93  Aligned_cols=68  Identities=15%  Similarity=-0.011  Sum_probs=39.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHH-------HHHHHH---------cCCCeEEeeccccC-CCCCCCc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ-------VQLTLE---------RGLPAMIGSFASKQ-LPYPSLS  317 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~-------Iq~A~e---------RGvpa~~~~lda~r-LPFpD~S  317 (344)
                      .+|||+|||+|..+..|+.++..+   ...|.++..       ++.+.+         ..+.++.++  +.. |+...++
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V---~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D--~~~~L~~~~~~  164 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRV---RMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS--SLTALTDITPR  164 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCE---EEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC--HHHHSTTCSSC
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEE---EEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC--HHHHHHhCccc
Confidence            479999999999999998874322   223444432       232321         123344444  333 4533347


Q ss_pred             ccceEecccc
Q 019228          318 FDMLHCARCG  327 (344)
Q Consensus       318 FDlVhcs~~L  327 (344)
                      ||+|++--..
T Consensus       165 fDvV~lDP~y  174 (258)
T 2oyr_A          165 PQVVYLDPMF  174 (258)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEEcCCC
Confidence            9999996433

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.14  E-value=0.0051  Score=59.94  Aligned_cols=68  Identities=15%  Similarity=0.101  Sum_probs=41.9

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH----c---------------CCC-eEEeeccccCCCC
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE----R---------------GLP-AMIGSFASKQLPY  313 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e----R---------------Gvp-a~~~~lda~rLPF  313 (344)
                      .+|||+|||+|.++..++.+ +.  ..+...|+++..++.|++    .               ++. +.+-..|+..+..
T Consensus        49 ~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           49 KIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             SEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            47999999999999988875 21  124446777776665553    2               443 3332234433321


Q ss_pred             -CCCcccceEec
Q 019228          314 -PSLSFDMLHCA  324 (344)
Q Consensus       314 -pD~SFDlVhcs  324 (344)
                       ..+.||+|++-
T Consensus       127 ~~~~~fD~I~lD  138 (378)
T 2dul_A          127 ERHRYFHFIDLD  138 (378)
T ss_dssp             HSTTCEEEEEEC
T ss_pred             hccCCCCEEEeC
Confidence             14579999953

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=95.87  E-value=0.0067  Score=61.75  Aligned_cols=91  Identities=11%  Similarity=0.066  Sum_probs=51.8

Q ss_pred             CCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC----C-------------ceEEEccccc
Q 019228          223 ASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK----E-------------LLTMCIANYE  285 (344)
Q Consensus       223 ggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer----~-------------V~~~sIa~~D  285 (344)
                      .|.+|.- ...++.|.+++....        ..+|||.+||+|.|...+++.    .             +....+.+.|
T Consensus       148 ~G~fyTP-~~iv~~mv~~l~p~~--------~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiE  218 (541)
T 2ar0_A          148 AGQYFTP-RPLIKTIIHLLKPQP--------REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLE  218 (541)
T ss_dssp             --CCCCC-HHHHHHHHHHHCCCT--------TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEE
T ss_pred             CCeeeCC-HHHHHHHHHHhccCC--------CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEc
Confidence            4556632 224556667765332        247999999999998655432    1             0011344566


Q ss_pred             ccHHHHHHHHH----cCCC--------eEEeeccccCC-CCCCCcccceEec
Q 019228          286 ASGSQVQLTLE----RGLP--------AMIGSFASKQL-PYPSLSFDMLHCA  324 (344)
Q Consensus       286 ~sea~Iq~A~e----RGvp--------a~~~~lda~rL-PFpD~SFDlVhcs  324 (344)
                      +++.+++.|+.    +|+.        +..+  |+... +++.+.||+|+++
T Consensus       219 id~~~~~lA~~nl~l~gi~~~~~~~~~I~~g--DtL~~~~~~~~~fD~Vv~N  268 (541)
T 2ar0_A          219 LVPGTRRLALMNCLLHDIEGNLDHGGAIRLG--NTLGSDGENLPKAHIVATN  268 (541)
T ss_dssp             SCHHHHHHHHHHHHTTTCCCBGGGTBSEEES--CTTSHHHHTSCCEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHhCCCccccccCCeEeC--CCcccccccccCCeEEEEC
Confidence            67666666654    3443        3444  34333 3567899999996

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=95.85  E-value=0.023  Score=58.04  Aligned_cols=97  Identities=18%  Similarity=0.135  Sum_probs=55.5

Q ss_pred             CCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHH----
Q 019228          223 ASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLE----  296 (344)
Q Consensus       223 ggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~e----  296 (344)
                      +|.+|.-. ..++.|.+++.....    .....+|||.+||+|.|...++++  ......+.+.|+.+...+.|+.    
T Consensus       196 ~G~fyTP~-~Vv~lmv~ll~~~~~----~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l  270 (542)
T 3lkd_A          196 AGEFYTPQ-PVAKLMTQIAFLGRE----DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMIL  270 (542)
T ss_dssp             CSSCCCCH-HHHHHHHHHHHTTCT----TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCeecccH-HHHHHHHHHHhcccC----CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHH
Confidence            46666422 245666666652110    012358999999999998766543  0001244556677666666643    


Q ss_pred             cCCC---eEEeeccccCC--C-CCCCcccceEec
Q 019228          297 RGLP---AMIGSFASKQL--P-YPSLSFDMLHCA  324 (344)
Q Consensus       297 RGvp---a~~~~lda~rL--P-FpD~SFDlVhcs  324 (344)
                      +|+.   +.+...|+...  | ++...||+|+++
T Consensus       271 ~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaN  304 (542)
T 3lkd_A          271 HGVPIENQFLHNADTLDEDWPTQEPTNFDGVLMN  304 (542)
T ss_dssp             TTCCGGGEEEEESCTTTSCSCCSSCCCBSEEEEC
T ss_pred             cCCCcCccceEecceecccccccccccccEEEec
Confidence            4652   22322344444  4 567899999996

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=95.83  E-value=0.013  Score=59.90  Aligned_cols=92  Identities=16%  Similarity=0.131  Sum_probs=55.6

Q ss_pred             CCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC----C--c--------eEEEcccccccH
Q 019228          223 ASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK----E--L--------LTMCIANYEASG  288 (344)
Q Consensus       223 ggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer----~--V--------~~~sIa~~D~se  288 (344)
                      .|.+|.- ...++.|.+++....         .+|||.+||+|.|...+++.    .  .        ....+.+.|+.+
T Consensus       224 ~G~fyTP-~~Vv~lmv~ll~p~~---------~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~  293 (544)
T 3khk_A          224 GGQYYTP-KSIVTLIVEMLEPYK---------GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNP  293 (544)
T ss_dssp             STTTCCC-HHHHHHHHHHHCCCS---------EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCH
T ss_pred             CCeEeCC-HHHHHHHHHHHhcCC---------CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCH
Confidence            4556632 234566777765321         28999999999987654321    0  0        023567788888


Q ss_pred             HHHHHHHH----cCCCeEE--eeccccCC-CCCCCcccceEec
Q 019228          289 SQVQLTLE----RGLPAMI--GSFASKQL-PYPSLSFDMLHCA  324 (344)
Q Consensus       289 a~Iq~A~e----RGvpa~~--~~lda~rL-PFpD~SFDlVhcs  324 (344)
                      .+++.|+.    +|+...+  ...|+... ++++..||+|+++
T Consensus       294 ~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~N  336 (544)
T 3khk_A          294 TTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTN  336 (544)
T ss_dssp             HHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCcccceeccchhcCcccccccccEEEEC
Confidence            87777654    3553222  11233333 4667899999996

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=95.43  E-value=0.0065  Score=57.54  Aligned_cols=57  Identities=12%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             CeEEEECC------ccch-hhHHHhh--CCceEEEcccccccHHHHHHHHHcCCCe-EEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGC------GYGS-FGAHLFS--KELLTMCIANYEASGSQVQLTLERGLPA-MIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGC------GtGs-faa~Lae--r~V~~~sIa~~D~sea~Iq~A~eRGvpa-~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+||      |+|+ .++.+..  ..|+++++.+.      +     .++.+ ..++  ...+|++ ++||+|+|.
T Consensus        65 ~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~------v-----~~v~~~i~gD--~~~~~~~-~~fD~Vvsn  130 (290)
T 2xyq_A           65 MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF------V-----SDADSTLIGD--CATVHTA-NKWDLIISD  130 (290)
T ss_dssp             CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC------B-----CSSSEEEESC--GGGCCCS-SCEEEEEEC
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC------C-----CCCEEEEECc--cccCCcc-CcccEEEEc
Confidence            58999999      5575 1222222  23555555443      1     25777 7775  4567765 789999996


Q ss_pred             c
Q 019228          325 R  325 (344)
Q Consensus       325 ~  325 (344)
                      .
T Consensus       131 ~  131 (290)
T 2xyq_A          131 M  131 (290)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.40  E-value=0.023  Score=52.72  Aligned_cols=40  Identities=23%  Similarity=0.046  Sum_probs=30.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER  297 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR  297 (344)
                      .+|||++||+|+.+..++..+..   +.+.|+++.+++.|.+|
T Consensus       237 ~~vlD~f~GsGt~~~~a~~~g~~---~~g~e~~~~~~~~a~~r  276 (297)
T 2zig_A          237 DVVLDPFAGTGTTLIAAARWGRR---ALGVELVPRYAQLAKER  276 (297)
T ss_dssp             CEEEETTCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHH
Confidence            48999999999999888876543   33467777777777765

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=95.36  E-value=0.039  Score=54.50  Aligned_cols=67  Identities=10%  Similarity=0.111  Sum_probs=45.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      .++||+||.+|.|+..|++++..++.|....+++..   ...-++...  ..|+..+..+.+.||+|+|-.+
T Consensus       213 ~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l---~~~~~V~~~--~~d~~~~~~~~~~~D~vvsDm~  279 (375)
T 4auk_A          213 MWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSL---MDTGQVTWL--REDGFKFRPTRSNISWMVCDMV  279 (375)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHH---HTTTCEEEE--CSCTTTCCCCSSCEEEEEECCS
T ss_pred             CEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhh---ccCCCeEEE--eCccccccCCCCCcCEEEEcCC
Confidence            589999999999999999997555555544444321   111223333  3356677777889999999643

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=95.27  E-value=0.0074  Score=57.62  Aligned_cols=89  Identities=12%  Similarity=0.100  Sum_probs=47.0

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHH---cCCCeEEe
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLE---RGLPAMIG  304 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~e---RGvpa~~~  304 (344)
                      .+..-+.+|++-.-+..        ..+|||+|||+|.|+.+.+++ ++.  ++.+.|+...+...+..   .+..+...
T Consensus        74 RAAfKL~ei~eK~~Lk~--------~~~VLDLGaAPGGWsQvAa~~~gv~--sV~GvdvG~d~~~~pi~~~~~g~~ii~~  143 (282)
T 3gcz_A           74 RGSAKLRWMEERGYVKP--------TGIVVDLGCGRGGWSYYAASLKNVK--KVMAFTLGVQGHEKPIMRTTLGWNLIRF  143 (282)
T ss_dssp             THHHHHHHHHHTTSCCC--------CEEEEEETCTTCHHHHHHHTSTTEE--EEEEECCCCTTSCCCCCCCBTTGGGEEE
T ss_pred             HHHHHHHHHHHhcCCCC--------CCEEEEeCCCCCHHHHHHHHhcCCC--eeeeEEeccCccccccccccCCCceEEe
Confidence            44555666666443332        248999999999999988754 332  22233333221011110   01111111


Q ss_pred             eccccCCCCCCCcccceEecccc
Q 019228          305 SFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .-+..-..++.+.+|+|+|-.+.
T Consensus       144 ~~~~dv~~l~~~~~DvVLSDmAp  166 (282)
T 3gcz_A          144 KDKTDVFNMEVIPGDTLLCDIGE  166 (282)
T ss_dssp             ECSCCGGGSCCCCCSEEEECCCC
T ss_pred             eCCcchhhcCCCCcCEEEecCcc
Confidence            11112235678999999997654

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=94.74  E-value=0.021  Score=56.24  Aligned_cols=68  Identities=12%  Similarity=0.112  Sum_probs=43.9

Q ss_pred             CeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc----CCC---eEEeeccccCC-C-CCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQL-P-YPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR----Gvp---a~~~~lda~rL-P-FpD~SFDlVhc  323 (344)
                      .+|||++||+|.++..++.+  ++  -.+...|.++..++.+++.    ++.   +.+-..|+..+ . ...+.||+|++
T Consensus        54 ~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           54 VKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             EEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            47999999999999998874  32  2445577777777666542    443   33333344332 1 12467999998


Q ss_pred             c
Q 019228          324 A  324 (344)
Q Consensus       324 s  324 (344)
                      -
T Consensus       132 D  132 (392)
T 3axs_A          132 D  132 (392)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=94.03  E-value=0.026  Score=61.09  Aligned_cols=69  Identities=14%  Similarity=0.059  Sum_probs=40.0

Q ss_pred             CeEEEECCccchhhHHHhhCC--ceEEEcccccccHHHHHHHHH----------cCCCe--EEeeccccC-CCCCCCccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLE----------RGLPA--MIGSFASKQ-LPYPSLSFD  319 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~--V~~~sIa~~D~sea~Iq~A~e----------RGvpa--~~~~lda~r-LPFpD~SFD  319 (344)
                      .+|||.|||+|.|...++++-  .....+.+.|+++..++.|..          .++..  +.++ +... -+++...||
T Consensus       323 ~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~d-D~L~~~~~~~~kFD  401 (878)
T 3s1s_A          323 EVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGE-DVCSLNPEDFANVS  401 (878)
T ss_dssp             CEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECC-CGGGCCGGGGTTEE
T ss_pred             CEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEec-chhcccccccCCCC
Confidence            589999999999998877642  101123345555555555511          23322  2221 2222 244578899


Q ss_pred             ceEec
Q 019228          320 MLHCA  324 (344)
Q Consensus       320 lVhcs  324 (344)
                      +|+|+
T Consensus       402 VVIgN  406 (878)
T 3s1s_A          402 VVVMN  406 (878)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99996

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=93.61  E-value=0.081  Score=46.47  Aligned_cols=56  Identities=9%  Similarity=0.104  Sum_probs=35.6

Q ss_pred             CeEEEECCccc-hhhHHHhh-CCc--eEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCC--CcccceEeccc
Q 019228          255 RTILDIGCGYG-SFGAHLFS-KEL--LTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPS--LSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtG-sfaa~Lae-r~V--~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD--~SFDlVhcs~~  326 (344)
                      .+|||||||.| ..|.+|++ .++  +++++.+..+     +        ++..++  -+ |..+  ..||+|.+.+.
T Consensus        37 ~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av-----~--------~v~dDi--F~-P~~~~Y~~~DLIYsirP   98 (153)
T 2k4m_A           37 TRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHG-----G--------IVRDDI--TS-PRMEIYRGAALIYSIRP   98 (153)
T ss_dssp             SEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSST-----T--------EECCCS--SS-CCHHHHTTEEEEEEESC
T ss_pred             CcEEEEccCCChHHHHHHHHhCCCeEEEEECCcccc-----c--------eEEccC--CC-CcccccCCcCEEEEcCC
Confidence            48999999999 58999997 664  4444433322     1        333332  12 4444  48999987754

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=92.97  E-value=0.034  Score=53.93  Aligned_cols=66  Identities=18%  Similarity=0.283  Sum_probs=35.5

Q ss_pred             CeEEEECCccchhhHHHhhC-C---ceEEEcccccccHHHHHHHHHcCCC-eEEee-ccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK-E---LLTMCIANYEASGSQVQLTLERGLP-AMIGS-FASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~---V~~~sIa~~D~sea~Iq~A~eRGvp-a~~~~-lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+||++|.|..+.+.. +   |.++++...+..+.+.  .+..+-. +.+-. .|...|+-  ..+|+|+|-
T Consensus        96 ~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~--~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivcD  167 (321)
T 3lkz_A           96 GKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQL--VQSYGWNIVTMKSGVDVFYRPS--ECCDTLLCD  167 (321)
T ss_dssp             EEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCC--CCBTTGGGEEEECSCCTTSSCC--CCCSEEEEC
T ss_pred             CEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcch--hhhcCCcceEEEeccCHhhCCC--CCCCEEEEE
Confidence            48999999999999977664 4   3344544432211100  0011111 22211 24445544  569999985

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=92.90  E-value=0.13  Score=53.87  Aligned_cols=67  Identities=7%  Similarity=0.119  Sum_probs=34.4

Q ss_pred             CeEEEECCccchh---hHHHhhCC---ceEEEcccccccHHHHHHHHHcC----CCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSF---GAHLFSKE---LLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsf---aa~Laer~---V~~~sIa~~D~sea~Iq~A~eRG----vpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||||||+|-+   +..-.++.   |.+..+.......-..+...+.+    |.++.+++..-.||   +.+|+|+|-
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP---EKVDIIVSE  435 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAP---EKADIIVSE  435 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCS---SCEEEEECC
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCC---cccCEEEEE
Confidence            4799999999976   33333332   22223222221111122222233    44566665433444   579999984

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=92.04  E-value=0.11  Score=50.04  Aligned_cols=38  Identities=21%  Similarity=0.313  Sum_probs=27.0

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK  274 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer  274 (344)
                      .+..-+.+|.+. .+-.       ...+|||+||++|.|+.+++++
T Consensus        65 Raa~KL~ei~ek-~l~~-------~g~~vlDLGaaPGgWsqva~~~  102 (300)
T 3eld_A           65 RGAAKIRWLHER-GYLR-------ITGRVLDLGCGRGGWSYYAAAQ  102 (300)
T ss_dssp             TTHHHHHHHHHH-TSCC-------CCEEEEEETCTTCHHHHHHHTS
T ss_pred             hHHHHHHHHHHh-CCCC-------CCCEEEEcCCCCCHHHHHHHHh
Confidence            444446666665 4211       2468999999999999999985

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=91.46  E-value=0.072  Score=50.42  Aligned_cols=83  Identities=16%  Similarity=0.096  Sum_probs=43.6

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-C---ceEEEcccccccHHHHHHHHHcCCC-eEEe
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-E---LLTMCIANYEASGSQVQLTLERGLP-AMIG  304 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~---V~~~sIa~~D~sea~Iq~A~eRGvp-a~~~  304 (344)
                      +..-+..|.+..-+..        ..+|||+||++|.|..+.+.+ +   |.++++.+.+..+.+.  .+..|-+ +.+.
T Consensus        63 a~~KL~ei~ek~~l~~--------g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~--~~s~gwn~v~fk  132 (267)
T 3p8z_A           63 GSAKLQWFVERNMVIP--------EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVP--MSTYGWNIVKLM  132 (267)
T ss_dssp             HHHHHHHHHHTTSSCC--------CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC--CCCTTTTSEEEE
T ss_pred             HHHHHHHHHHhcCCCC--------CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcch--hhhcCcCceEEE
Confidence            3444556655443322        248999999999999977664 3   4455554433221110  1112322 2222


Q ss_pred             e-ccccCCCCCCCcccceEec
Q 019228          305 S-FASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       305 ~-lda~rLPFpD~SFDlVhcs  324 (344)
                      . .|...+|=  ..+|+|+|-
T Consensus       133 ~gvDv~~~~~--~~~DtllcD  151 (267)
T 3p8z_A          133 SGKDVFYLPP--EKCDTLLCD  151 (267)
T ss_dssp             CSCCGGGCCC--CCCSEEEEC
T ss_pred             eccceeecCC--ccccEEEEe
Confidence            1 13333422  569999995

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=89.74  E-value=0.26  Score=47.05  Aligned_cols=80  Identities=13%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH---cCCCeEEeecc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE---RGLPAMIGSFA  307 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e---RGvpa~~~~ld  307 (344)
                      --.++.+.+.+....+        .++||.+||.|..+..|++++.   .+.+.|.++..++.|.+   ..+.++.+++.
T Consensus         8 pVLl~e~le~L~~~~g--------g~~VD~T~G~GGHS~~il~~~g---~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~   76 (285)
T 1wg8_A            8 PVLYQEALDLLAVRPG--------GVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKGLHLPGLTVVQGNFR   76 (285)
T ss_dssp             CTTHHHHHHHHTCCTT--------CEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHTCCTTEEEEESCGG
T ss_pred             hHHHHHHHHhhCCCCC--------CEEEEeCCCCcHHHHHHHHCCC---EEEEEeCCHHHHHHHHhhccCCEEEEECCcc
Confidence            3346667777765433        5899999999999999998742   44557888888877765   12333444432


Q ss_pred             ccCCC-----CCCCcccceEe
Q 019228          308 SKQLP-----YPSLSFDMLHC  323 (344)
Q Consensus       308 a~rLP-----FpD~SFDlVhc  323 (344)
                        .++     +..+.||.|++
T Consensus        77 --~l~~~L~~~g~~~vDgIL~   95 (285)
T 1wg8_A           77 --HLKRHLAALGVERVDGILA   95 (285)
T ss_dssp             --GHHHHHHHTTCSCEEEEEE
T ss_pred             --hHHHHHHHcCCCCcCEEEe
Confidence              221     12357888886

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=89.72  E-value=0.6  Score=42.33  Aligned_cols=40  Identities=13%  Similarity=-0.066  Sum_probs=29.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER  297 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR  297 (344)
                      .+|||..||+|+.+...++.+...   .+.|+++..++.|.+|
T Consensus       214 ~~vlD~f~GsGtt~~~a~~~gr~~---ig~e~~~~~~~~~~~r  253 (260)
T 1g60_A          214 DLVLDCFMGSGTTAIVAKKLGRNF---IGCDMNAEYVNQANFV  253 (260)
T ss_dssp             CEEEESSCTTCHHHHHHHHTTCEE---EEEESCHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHcCCeE---EEEeCCHHHHHHHHHH
Confidence            489999999999988777665433   2357777777777766

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=89.60  E-value=0.83  Score=46.31  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=51.4

Q ss_pred             CCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhh----CCce--------EEEcccccccHHH
Q 019228          223 ASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS----KELL--------TMCIANYEASGSQ  290 (344)
Q Consensus       223 ggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Lae----r~V~--------~~sIa~~D~sea~  290 (344)
                      .|.+|.- ...++.|.+++....+        .+|||-.||+|.|.....+    ..-.        -..+.+.+.....
T Consensus       196 ~GqfyTP-~~Vv~lmv~l~~p~~~--------~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~  266 (530)
T 3ufb_A          196 SGEFYTP-RPVVRFMVEVMDPQLG--------ESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLP  266 (530)
T ss_dssp             CCCCCCC-HHHHHHHHHHHCCCTT--------CCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHH
T ss_pred             CceECCc-HHHHHHHHHhhccCCC--------CEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHH
Confidence            4666642 2356778888764432        4799999999999754322    1100        0123445566555


Q ss_pred             HHHHHH----cCCC-eEEeeccccCCCCC----CCcccceEec
Q 019228          291 VQLTLE----RGLP-AMIGSFASKQLPYP----SLSFDMLHCA  324 (344)
Q Consensus       291 Iq~A~e----RGvp-a~~~~lda~rLPFp----D~SFDlVhcs  324 (344)
                      ...|+-    +|+. ..+...|+-..|+.    ...||+|+++
T Consensus       267 ~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~N  309 (530)
T 3ufb_A          267 YLLVQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTN  309 (530)
T ss_dssp             HHHHHHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEEC
T ss_pred             HHHHHHHHHhcCCccccccccccccCchhhhcccccceEEEec
Confidence            555442    3543 22222244444443    3579999986

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=87.45  E-value=1.2  Score=42.27  Aligned_cols=69  Identities=19%  Similarity=0.236  Sum_probs=46.7

Q ss_pred             CCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc------C------CCeEEeeccccCCCCCCCccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER------G------LPAMIGSFASKQLPYPSLSFD  319 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR------G------vpa~~~~lda~rLPFpD~SFD  319 (344)
                      ..++||=||-|.|..+..+++. .+.  .+...++.++.++.|++.      +      +.+.++|. .+-|--..++||
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~--~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg-~~~l~~~~~~yD  159 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVE--SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDG-VNFVNQTSQTFD  159 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCC--EEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCT-TTTTSCSSCCEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcc--eEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechH-HHHHhhccccCC
Confidence            4689999999999999988876 443  334467777777777643      1      22344442 233445678999


Q ss_pred             ceEec
Q 019228          320 MLHCA  324 (344)
Q Consensus       320 lVhcs  324 (344)
                      +|+.-
T Consensus       160 vIi~D  164 (294)
T 3o4f_A          160 VIISD  164 (294)
T ss_dssp             EEEES
T ss_pred             EEEEe
Confidence            99874

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=87.16  E-value=0.31  Score=44.93  Aligned_cols=17  Identities=24%  Similarity=0.174  Sum_probs=13.6

Q ss_pred             CeEEEECCccchhhHHH
Q 019228          255 RTILDIGCGYGSFGAHL  271 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~L  271 (344)
                      .+|||||+|+|..++.+
T Consensus        62 ~~ILEiGfGtG~n~l~~   78 (257)
T 2qy6_A           62 FVVAESGFGTGLNFLTL   78 (257)
T ss_dssp             EEEEESCCTTSHHHHHH
T ss_pred             CEEEEECCChHHHHHHH
Confidence            48999999999666543

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=84.86  E-value=0.65  Score=49.58  Aligned_cols=14  Identities=36%  Similarity=0.591  Sum_probs=12.2

Q ss_pred             CeEEEECCccchhh
Q 019228          255 RTILDIGCGYGSFG  268 (344)
Q Consensus       255 r~VLDVGCGtGsfa  268 (344)
                      .+|||||||+|-+.
T Consensus       411 ~VVldVGaGtGpLs  424 (745)
T 3ua3_A          411 VVIYLLGGGRGPIG  424 (745)
T ss_dssp             EEEEEESCTTCHHH
T ss_pred             cEEEEECCCCCHHH
Confidence            47999999999774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.42
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.35
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.32
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.29
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.23
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.15
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.14
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.13
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.13
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.05
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.97
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.96
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.95
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.94
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.92
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.9
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.82
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.8
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.79
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.72
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.67
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.59
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.58
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.57
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.54
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.54
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.52
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.49
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.47
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.46
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.46
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.44
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.4
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.37
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.27
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.24
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.2
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.18
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.13
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.12
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.1
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.03
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.02
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.97
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.94
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.87
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.84
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.77
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.68
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.6
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.58
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.56
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.5
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.45
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.36
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.36
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.32
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.3
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.21
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.11
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.04
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.03
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.99
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.95
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	96.88
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	96.86
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.67
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	96.46
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	96.25
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	96.13
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	95.9
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	95.75
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	95.65
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	95.52
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	95.02
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	94.32
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	93.79
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	93.33
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	92.21
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	91.97
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	91.37
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	90.75
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	90.59
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	90.05
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	89.35
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	87.88
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	86.06
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	84.04
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	82.41
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	82.25
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	80.03

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.42  E-value=1.9e-13  Score=119.81  Aligned_cols=89  Identities=20%  Similarity=0.286  Sum_probs=69.5

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeec
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSF  306 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~l  306 (344)
                      ++.+.+.+.+.+++|        .+|||||||||.++..|++++.   .+.+.|+++.|++.|+++    +++ +.+-..
T Consensus         3 ~~~~~l~~~~~~~~~--------~rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~   71 (234)
T d1xxla_           3 HSLGLMIKTAECRAE--------HRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQG   71 (234)
T ss_dssp             HHHHHHHHHHTCCTT--------CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             hHHHHHHHHhCCCCC--------CEEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhccccccccccccc
Confidence            467788888888765        5899999999999999998753   456678888888877654    443 444444


Q ss_pred             cccCCCCCCCcccceEecccccccCc
Q 019228          307 ASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      |++.+||++++||+|+|..++ +|.+
T Consensus        72 d~~~~~~~~~~fD~v~~~~~l-~~~~   96 (234)
T d1xxla_          72 TAESLPFPDDSFDIITCRYAA-HHFS   96 (234)
T ss_dssp             BTTBCCSCTTCEEEEEEESCG-GGCS
T ss_pred             ccccccccccccceeeeecee-eccc
Confidence            678999999999999999988 4443

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.35  E-value=1.3e-12  Score=112.81  Aligned_cols=86  Identities=12%  Similarity=0.272  Sum_probs=65.3

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccc
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFAS  308 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda  308 (344)
                      +.++.++++++++        .+|||||||+|.++..|++++.   .+.+.|+++.|++.|+++    +.+ +.+...+.
T Consensus         4 ~~~ll~~~~l~~~--------~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~   72 (231)
T d1vl5a_           4 LAKLMQIAALKGN--------EEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA   72 (231)
T ss_dssp             HHHHHHHHTCCSC--------CEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred             HHHHHHhcCCCCc--------CEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccc
Confidence            4567777777543        5899999999999999998864   345678888888877654    333 34444567


Q ss_pred             cCCCCCCCcccceEeccccccc
Q 019228          309 KQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       309 ~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      +.|||++++||+|+|..++.+.
T Consensus        73 ~~l~~~~~~fD~v~~~~~l~~~   94 (231)
T d1vl5a_          73 EQMPFTDERFHIVTCRIAAHHF   94 (231)
T ss_dssp             -CCCSCTTCEEEEEEESCGGGC
T ss_pred             cccccccccccccccccccccc
Confidence            8999999999999999988554

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.32  E-value=1.2e-12  Score=111.53  Aligned_cols=77  Identities=17%  Similarity=0.246  Sum_probs=60.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||||||+|.++..|++.+.   .+.+.|+++.|++.|+++    +.....-..|+..|||++++||+|+|..++.++
T Consensus        39 ~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~  115 (226)
T d1ve3a1          39 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF  115 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred             CEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence            4799999999999999999865   345578888898887764    444444445788999999999999999988665


Q ss_pred             Cccc
Q 019228          331 DQKG  334 (344)
Q Consensus       331 ~~~~  334 (344)
                      ...+
T Consensus       116 ~~~d  119 (226)
T d1ve3a1         116 EPLE  119 (226)
T ss_dssp             CHHH
T ss_pred             ChhH
Confidence            4333

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=2.7e-12  Score=110.66  Aligned_cols=74  Identities=19%  Similarity=0.397  Sum_probs=60.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++.|++.|++++....+ ..+++.|||++++||+|+|....++|.+
T Consensus        44 ~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~-~~~~~~l~~~~~~fD~ii~~~~~~~~~~  117 (246)
T d2avna1          44 CRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVV-EAKAEDLPFPSGAFEAVLALGDVLSYVE  117 (246)
T ss_dssp             CEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEE-ECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred             CEEEEECCCCchhcccccccce---EEEEeecccccccccccccccccc-cccccccccccccccceeeecchhhhhh
Confidence            4799999999999999999864   456679999999999999865433 2467899999999999999765556643

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.23  E-value=1e-11  Score=112.00  Aligned_cols=75  Identities=21%  Similarity=0.265  Sum_probs=59.3

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|.++.+|+++ +.   .+.+.|+++.|++.|.++    |+.  +.+-..+++.|||++++||+|+|..++
T Consensus        69 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  145 (282)
T d2o57a1          69 AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  145 (282)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchh
Confidence            58999999999999999876 43   345578888888777764    443  344445678999999999999999999


Q ss_pred             cccCc
Q 019228          328 VDWDQ  332 (344)
Q Consensus       328 i~W~~  332 (344)
                      .|+..
T Consensus       146 ~h~~d  150 (282)
T d2o57a1         146 LHSPD  150 (282)
T ss_dssp             GGCSC
T ss_pred             hhccC
Confidence            88754

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=3.9e-11  Score=108.62  Aligned_cols=87  Identities=20%  Similarity=0.315  Sum_probs=66.5

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHcCCCeEEeeccc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS  308 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda  308 (344)
                      +..++.|.+.++.+         ..+|||||||+|.++..|+++  ++   .+.+.|+++.+++.|+++...+.+...|+
T Consensus        71 ~~~~~~l~~~~~~~---------~~~iLDiGcG~G~~~~~l~~~~~~~---~~~giD~s~~~~~~a~~~~~~~~~~~~d~  138 (268)
T d1p91a_          71 DAIVAQLRERLDDK---------ATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASS  138 (268)
T ss_dssp             HHHHHHHHHHSCTT---------CCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCT
T ss_pred             HHHHHHHHHhcCCC---------CCEEEEeCCCCcHHHHHHHHHCCCC---EEEEecchHhhhhhhhcccccccceeeeh
Confidence            44455566665532         358999999999999999987  33   34457899999999988865555555578


Q ss_pred             cCCCCCCCcccceEecccccc
Q 019228          309 KQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       309 ~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||++++||+|+|..++.+
T Consensus       139 ~~l~~~~~sfD~v~~~~~~~~  159 (268)
T d1p91a_         139 HRLPFSDTSMDAIIRIYAPCK  159 (268)
T ss_dssp             TSCSBCTTCEEEEEEESCCCC
T ss_pred             hhccCCCCCEEEEeecCCHHH
Confidence            899999999999999877644

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.14  E-value=3.7e-11  Score=102.54  Aligned_cols=67  Identities=25%  Similarity=0.345  Sum_probs=56.2

Q ss_pred             eEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCCCCCCcccceEecccccccC
Q 019228          256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      +|||||||+|.++..|.+  ++     +.|+++.+++.|+++++.+..++  ++.+|+++++||+|+|..+|.+..
T Consensus        39 ~vLDiGcG~G~~~~~~~~--~~-----giD~s~~~~~~a~~~~~~~~~~d--~~~l~~~~~~fD~I~~~~~l~h~~  105 (208)
T d1vlma_          39 RGVEIGVGTGRFAVPLKI--KI-----GVEPSERMAEIARKRGVFVLKGT--AENLPLKDESFDFALMVTTICFVD  105 (208)
T ss_dssp             CEEEETCTTSTTHHHHTC--CE-----EEESCHHHHHHHHHTTCEEEECB--TTBCCSCTTCEEEEEEESCGGGSS
T ss_pred             eEEEECCCCcccccccce--EE-----EEeCChhhccccccccccccccc--cccccccccccccccccccccccc
Confidence            699999999999988854  33     35788999999999988766665  678999999999999999996664

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=5.8e-11  Score=104.64  Aligned_cols=90  Identities=13%  Similarity=0.149  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--eEE
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--AMI  303 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~  303 (344)
                      ...++.|.+++.+.++        .+|||||||+|.++.+|+++ ++   .+.+.|+++.|++.|+++    |+.  +.+
T Consensus        19 ~~~~~~l~~~~~l~pg--------~~VLDiGCG~G~~~~~la~~~~~---~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~   87 (245)
T d1nkva_          19 EEKYATLGRVLRMKPG--------TRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHF   87 (245)
T ss_dssp             HHHHHHHHHHTCCCTT--------CEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             HHHHHHHHHHcCCCCC--------CEEEEEcCCCCHHHHHHHHhcCC---EEEEEecccchhhHHHHHHHHhhccccchh
Confidence            4567888999887654        58999999999999998875 54   345678899998877665    543  333


Q ss_pred             eeccccCCCCCCCcccceEecccccccCc
Q 019228          304 GSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      -..|.+.+ +++++||+|+|..++.++..
T Consensus        88 ~~~d~~~~-~~~~~fD~v~~~~~~~~~~d  115 (245)
T d1nkva_          88 IHNDAAGY-VANEKCDVAACVGATWIAGG  115 (245)
T ss_dssp             EESCCTTC-CCSSCEEEEEEESCGGGTSS
T ss_pred             hhhHHhhc-cccCceeEEEEEehhhccCC
Confidence            34456777 67999999999999977754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=4.4e-11  Score=104.24  Aligned_cols=74  Identities=15%  Similarity=0.225  Sum_probs=57.2

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEecccccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      ..+|||||||||.++..|++++.   .+.+.|++++|++.|+++    ++.+.+...|++.||++ ++||+|+|....++
T Consensus        42 ~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~  117 (251)
T d1wzna1          42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM  117 (251)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred             CCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence            46899999999999999999875   445678888998887765    44455555567899998 48999999865445


Q ss_pred             cC
Q 019228          330 WD  331 (344)
Q Consensus       330 W~  331 (344)
                      |.
T Consensus       118 ~~  119 (251)
T d1wzna1         118 YF  119 (251)
T ss_dssp             GS
T ss_pred             cC
Confidence            44

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.05  E-value=1.5e-10  Score=101.59  Aligned_cols=89  Identities=20%  Similarity=0.282  Sum_probs=62.5

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeecc
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFA  307 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~ld  307 (344)
                      .+.+.+.+++....      ...++|||||||+|.++..|++++.   .+.+.|++++|++.|+++    ++++.+...|
T Consensus        22 ~~~~~~~~~~~~~~------~~~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d   92 (246)
T d1y8ca_          22 KWSDFIIEKCVENN------LVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQD   92 (246)
T ss_dssp             HHHHHHHHHHHTTT------CCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCC
T ss_pred             HHHHHHHHHHHHhC------CCCCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccc
Confidence            34556666665321      1346899999999999999999875   345679999999888765    5555444445


Q ss_pred             ccCCCCCCCcccceEeccccccc
Q 019228          308 SKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       308 a~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      ...+++ +++||+|+|....+++
T Consensus        93 ~~~~~~-~~~fD~i~~~~~~~~~  114 (246)
T d1y8ca_          93 ISNLNI-NRKFDLITCCLDSTNY  114 (246)
T ss_dssp             GGGCCC-SCCEEEEEECTTGGGG
T ss_pred             hhhhcc-cccccccceeeeeeec
Confidence            667776 4689999997433343

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.97  E-value=1.6e-10  Score=95.42  Aligned_cols=72  Identities=13%  Similarity=-0.012  Sum_probs=54.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--C-----------------CeEEeeccccCCC-CC
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--L-----------------PAMIGSFASKQLP-YP  314 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--v-----------------pa~~~~lda~rLP-Fp  314 (344)
                      .+|||+|||+|..+.+|++++.   .+.+.|+++.|++.|+++.  .                 .+..+  +...|+ ++
T Consensus        22 ~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~l~~~~   96 (201)
T d1pjza_          22 ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG--DFFALTARD   96 (201)
T ss_dssp             CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE--CCSSSTHHH
T ss_pred             CEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc--ccccccccc
Confidence            5899999999999999999875   4566799999999998762  1                 12223  334554 45


Q ss_pred             CCcccceEecccccccC
Q 019228          315 SLSFDMLHCARCGVDWD  331 (344)
Q Consensus       315 D~SFDlVhcs~~Li~W~  331 (344)
                      ..+||+|+|+.++.+..
T Consensus        97 ~~~~D~i~~~~~l~~l~  113 (201)
T d1pjza_          97 IGHCAAFYDRAAMIALP  113 (201)
T ss_dssp             HHSEEEEEEESCGGGSC
T ss_pred             ccceeEEEEEeeeEecc
Confidence            68999999998885543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.96  E-value=6.1e-10  Score=96.75  Aligned_cols=80  Identities=13%  Similarity=0.039  Sum_probs=57.2

Q ss_pred             CeEEEECCccchhhHHHhhCC-ceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~-V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||||||||.++..|++.- -....+.+.|+++.|++.|+++    +.  .+.+..  +.-++++.+.||+|+|+.++
T Consensus        41 ~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~--~d~~~~~~~~~d~i~~~~~l  118 (225)
T d1im8a_          41 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC--NDIRHVEIKNASMVILNFTL  118 (225)
T ss_dssp             CEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEEC--SCTTTCCCCSEEEEEEESCG
T ss_pred             CEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhcc--chhhccccccceeeEEeeec
Confidence            589999999999998888641 1123566789999999999875    22  333333  34567777889999999888


Q ss_pred             cccCccccc
Q 019228          328 VDWDQKGKC  336 (344)
Q Consensus       328 i~W~~~~g~  336 (344)
                      .+++..+..
T Consensus       119 ~~~~~~d~~  127 (225)
T d1im8a_         119 QFLPPEDRI  127 (225)
T ss_dssp             GGSCGGGHH
T ss_pred             cccChhhHH
Confidence            555545443

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.8e-10  Score=98.94  Aligned_cols=78  Identities=10%  Similarity=0.020  Sum_probs=59.7

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC----CC-eEEeeccccCCCCCCCcccceEeccccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LP-AMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG----vp-a~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      ..+|||||||+|.++..|+++...  .+.+.|+++.|++.|+++.    .+ ..+...|.+.+++++++||+|+|..++.
T Consensus        61 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            358999999999999988766432  3455789999999888762    22 2333446788999999999999999997


Q ss_pred             ccCcc
Q 019228          329 DWDQK  333 (344)
Q Consensus       329 ~W~~~  333 (344)
                      +....
T Consensus       139 h~~~~  143 (222)
T d2ex4a1         139 HLTDQ  143 (222)
T ss_dssp             GSCHH
T ss_pred             cchhh
Confidence            76543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.94  E-value=1.2e-09  Score=93.20  Aligned_cols=74  Identities=15%  Similarity=0.245  Sum_probs=54.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCe-EEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPA-MIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa-~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||||||+|.++.+|++++..   +.+.|+++.+++.|++    .+++. .+...|...+++ +++||+|+|..++.+
T Consensus        32 grvLDiGcG~G~~~~~la~~g~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~  107 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYLAANGYD---VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMF  107 (198)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred             CcEEEECCCCCHHHHHHHHHhhh---hccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeec
Confidence            47999999999999999999753   4457888888876554    35553 333345567775 789999999998865


Q ss_pred             cCc
Q 019228          330 WDQ  332 (344)
Q Consensus       330 W~~  332 (344)
                      ...
T Consensus       108 ~~~  110 (198)
T d2i6ga1         108 LEA  110 (198)
T ss_dssp             SCT
T ss_pred             CCH
Confidence            433

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.92  E-value=1e-09  Score=99.65  Aligned_cols=93  Identities=15%  Similarity=0.207  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeec
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSF  306 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~l  306 (344)
                      +.|++.|.+.+..-       ....+|||||||+|.++..|++.--....+.+.|+++.+++.|+++    ++.+.+...
T Consensus        12 ~d~l~~l~~~~~~~-------~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~   84 (281)
T d2gh1a1          12 DDYVSFLVNTVWKI-------TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEG   84 (281)
T ss_dssp             HHHHHHHHHTTSCC-------CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEES
T ss_pred             HHHHHHHHHHHhcc-------CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccc
Confidence            56777776644211       1346899999999999998887411111344568888888888765    334444455


Q ss_pred             cccCCCCCCCcccceEecccccccC
Q 019228          307 ASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      |+..+||++ +||+|+|..++.+..
T Consensus        85 d~~~~~~~~-~fD~v~~~~~l~~~~  108 (281)
T d2gh1a1          85 DATEIELND-KYDIAICHAFLLHMT  108 (281)
T ss_dssp             CTTTCCCSS-CEEEEEEESCGGGCS
T ss_pred             ccccccccC-CceEEEEehhhhcCC
Confidence            678899875 799999999986553

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.90  E-value=5.7e-10  Score=100.40  Aligned_cols=79  Identities=14%  Similarity=0.184  Sum_probs=59.7

Q ss_pred             CCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCe-EEeeccccCCCCCCCcccceEeccccccc
Q 019228          254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPA-MIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa-~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      ..+|||+|||+|.++..|+.+...  .+.+.|.++.|++.|+++-  .+. .+-..+.+.+++++++||+|+|..++.|+
T Consensus        94 ~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~hl  171 (254)
T d1xtpa_          94 TSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYL  171 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred             CCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecccccc
Confidence            458999999999999988765221  3345688899999988763  232 23334677899999999999999999777


Q ss_pred             Cccc
Q 019228          331 DQKG  334 (344)
Q Consensus       331 ~~~~  334 (344)
                      ...+
T Consensus       172 ~d~d  175 (254)
T d1xtpa_         172 TDAD  175 (254)
T ss_dssp             CHHH
T ss_pred             chhh
Confidence            6554

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.82  E-value=4.2e-09  Score=91.73  Aligned_cols=70  Identities=16%  Similarity=0.117  Sum_probs=53.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---CCeEEeeccccCCCCCCCcccceEeccccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                      .+|||||||+|.++..|++++.   .+.+.|+++++++.|+++.   +....+  +.+.+++ +++||+|+|..++.|.
T Consensus        22 ~~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~--~~~~~~~-~~~fD~I~~~~vleh~   94 (225)
T d2p7ia1          22 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHS--RFEDAQL-PRRYDNIVLTHVLEHI   94 (225)
T ss_dssp             SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEES--CGGGCCC-SSCEEEEEEESCGGGC
T ss_pred             CcEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccccccccccc--ccccccc-ccccccccccceeEec
Confidence            4699999999999999998754   3445788899999998773   333444  3456665 6899999999988554

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.80  E-value=9.6e-09  Score=87.96  Aligned_cols=102  Identities=18%  Similarity=0.277  Sum_probs=66.9

Q ss_pred             ccceeeecCCCccc--cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHH
Q 019228          214 EEEQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV  291 (344)
Q Consensus       214 eg~~~~FpGggt~F--~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~I  291 (344)
                      .|..+.|....-.|  ++.+.--..+.+.++..+        ..+|||+|||+|.++..|+...-   .+.+.|+++.++
T Consensus        19 ~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~~--------~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i   87 (194)
T d1dusa_          19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDK--------DDDILDLGCGYGVIGIALADEVK---STTMADINRRAI   87 (194)
T ss_dssp             TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCT--------TCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHH
T ss_pred             CCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcCC--------CCeEEEEeecCChhHHHHHhhcc---ccceeeeccccc
Confidence            46666664422244  355544556777776543        36899999999999999987643   334467888888


Q ss_pred             HHHHHc----CC---CeEEeeccccCCCCCCCcccceEecccc
Q 019228          292 QLTLER----GL---PAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       292 q~A~eR----Gv---pa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      +.|+++    ++   .+.+...|... ++++++||+|+|....
T Consensus        88 ~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~  129 (194)
T d1dusa_          88 KLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPI  129 (194)
T ss_dssp             HHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCS
T ss_pred             hhHHHHHHHhCCccceEEEEEcchhh-hhccCCceEEEEcccE
Confidence            777653    33   23333334434 7889999999997655

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.79  E-value=4.5e-09  Score=93.01  Aligned_cols=74  Identities=14%  Similarity=0.055  Sum_probs=55.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CC--CeEEeeccccCCCC-CCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPY-PSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gv--pa~~~~lda~rLPF-pD~SFDlVhcs~~L  327 (344)
                      .+|||||||+|..+..+++.+..  .+.+.|+++.|++.|.+|    +.  .+.+...|+..+++ ++++||+|+|..++
T Consensus        26 ~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l  103 (252)
T d1ri5a_          26 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF  103 (252)
T ss_dssp             CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred             CEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence            58999999999998888876542  345678889999888765    22  24444556667777 57899999999888


Q ss_pred             ccc
Q 019228          328 VDW  330 (344)
Q Consensus       328 i~W  330 (344)
                      ++.
T Consensus       104 ~~~  106 (252)
T d1ri5a_         104 HYA  106 (252)
T ss_dssp             GGG
T ss_pred             eec
Confidence            554

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.1e-08  Score=89.42  Aligned_cols=90  Identities=11%  Similarity=0.020  Sum_probs=64.5

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC--------------
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--------------  299 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv--------------  299 (344)
                      ++.+.+.+....+        .+|||+|||+|..+.+|++++.   .+.+.|+|+.+|+.|+++.-              
T Consensus        34 ~~~~~~~l~~~~~--------~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~  102 (229)
T d2bzga1          34 KKHLDTFLKGKSG--------LRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGT  102 (229)
T ss_dssp             HHHHHHHHTTCCS--------CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTC
T ss_pred             HHHHHHhcCCCCC--------CEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhccccc
Confidence            4556666654332        5899999999999999999976   44567999999988876521              


Q ss_pred             --------CeEEeeccccCC-CCCCCcccceEecccccccCccc
Q 019228          300 --------PAMIGSFASKQL-PYPSLSFDMLHCARCGVDWDQKG  334 (344)
Q Consensus       300 --------pa~~~~lda~rL-PFpD~SFDlVhcs~~Li~W~~~~  334 (344)
                              .+.+-..|...+ |+..++||+|+...++++.+..+
T Consensus       103 ~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~  146 (229)
T d2bzga1         103 KVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGD  146 (229)
T ss_dssp             EEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGG
T ss_pred             ceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchh
Confidence                    111222233344 67789999999999998877654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=1.6e-08  Score=93.62  Aligned_cols=91  Identities=16%  Similarity=0.153  Sum_probs=63.9

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCCeEEee
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLPAMIGS  305 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~  305 (344)
                      ...++.+.+.+.+++|        .+|||||||.|.++.+++++ ++.   +.+.++++.|++.|.++    ++...+..
T Consensus        47 ~~k~~~~~~~l~l~~G--------~~VLDiGCG~G~~~~~~a~~~g~~---v~git~s~~q~~~a~~~~~~~~l~~~v~~  115 (291)
T d1kpia_          47 YAKRKLALDKLNLEPG--------MTLLDIGCGWGSTMRHAVAEYDVN---VIGLTLSENQYAHDKAMFDEVDSPRRKEV  115 (291)
T ss_dssp             HHHHHHHHHTTCCCTT--------CEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHSCCSSCEEE
T ss_pred             HHHHHHHHHhcCCCCC--------CEEEEecCcchHHHHHHHHhcCcc---eeeccchHHHHHHHHHHHHhhccchhhhh
Confidence            3446777777776554        58999999999999999875 653   34467777777666554    55432221


Q ss_pred             ccccCCCCCCCcccceEecccccccCcc
Q 019228          306 FASKQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                       .....++++++||.|+|..++-|....
T Consensus       116 -~~~d~~~~~~~fD~i~sie~~eH~~~~  142 (291)
T d1kpia_         116 -RIQGWEEFDEPVDRIVSLGAFEHFADG  142 (291)
T ss_dssp             -EECCGGGCCCCCSEEEEESCGGGTTCC
T ss_pred             -hhhcccccccccceEeechhHHhcchh
Confidence             123567889999999999999777543

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.59  E-value=2.9e-08  Score=90.95  Aligned_cols=87  Identities=14%  Similarity=0.141  Sum_probs=60.2

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--eEEee
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--AMIGS  305 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~  305 (344)
                      .++.|.+.+.+++|        .+|||||||+|.++.+++++ ++   .+.+.++++.|++.|+++    ++.  +.+..
T Consensus        40 k~~~~~~~l~l~~g--------~~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~  108 (280)
T d2fk8a1          40 KVDLNLDKLDLKPG--------MTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL  108 (280)
T ss_dssp             HHHHHHTTSCCCTT--------CEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE
T ss_pred             HHHHHHHHcCCCCC--------CEEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhccccchhhhh
Confidence            35566665555443        58999999999999998876 54   344567888888777665    543  22332


Q ss_pred             ccccCCCCCCCcccceEecccccccCcc
Q 019228          306 FASKQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      .|   ....+++||.|+|..++.|....
T Consensus       109 ~d---~~~~~~~fD~i~si~~~eh~~~~  133 (280)
T d2fk8a1         109 QG---WEDFAEPVDRIVSIEAFEHFGHE  133 (280)
T ss_dssp             SC---GGGCCCCCSEEEEESCGGGTCGG
T ss_pred             hh---hhhhccchhhhhHhhHHHHhhhh
Confidence            23   23346899999999999887654

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.7e-08  Score=90.02  Aligned_cols=76  Identities=21%  Similarity=0.132  Sum_probs=52.6

Q ss_pred             eEEEECCccchhhHHHhhC-----CceEEEcccccccHHHHHHHHHc-----CCC---eEEeeccc------cCCCCCCC
Q 019228          256 TILDIGCGYGSFGAHLFSK-----ELLTMCIANYEASGSQVQLTLER-----GLP---AMIGSFAS------KQLPYPSL  316 (344)
Q Consensus       256 ~VLDVGCGtGsfaa~Laer-----~V~~~sIa~~D~sea~Iq~A~eR-----Gvp---a~~~~lda------~rLPFpD~  316 (344)
                      +|||||||+|.++..|+..     .-....+.+.|+++.|++.|.++     .++   ..+...+.      ...+++++
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ  122 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence            6999999999998777543     11234556789999999988875     122   11222111      13578999


Q ss_pred             cccceEecccccccC
Q 019228          317 SFDMLHCARCGVDWD  331 (344)
Q Consensus       317 SFDlVhcs~~Li~W~  331 (344)
                      +||+|+|..++++..
T Consensus       123 ~fD~I~~~~~l~~~~  137 (280)
T d1jqea_         123 KWDFIHMIQMLYYVK  137 (280)
T ss_dssp             CEEEEEEESCGGGCS
T ss_pred             ceeEEEEccceecCC
Confidence            999999999995553

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.57  E-value=4e-08  Score=83.60  Aligned_cols=82  Identities=15%  Similarity=0.169  Sum_probs=59.0

Q ss_pred             HHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccc
Q 019228          235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFAS  308 (344)
Q Consensus       235 d~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda  308 (344)
                      .+|...+....+        .+|||+|||+|.++..|+....   .+.+.|.++++++.|+++    |+.  +.+-..++
T Consensus        23 ~~il~~l~~~~g--------~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda   91 (186)
T d1l3ia_          23 CLIMCLAEPGKN--------DVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA   91 (186)
T ss_dssp             HHHHHHHCCCTT--------CEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH
T ss_pred             HHHHHhcCCCCC--------CEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECch
Confidence            456666665543        5899999999999999988743   234467888887777653    542  33333457


Q ss_pred             cCCCCCCCcccceEecccc
Q 019228          309 KQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       309 ~rLPFpD~SFDlVhcs~~L  327 (344)
                      ..++++..+||+|+|....
T Consensus        92 ~~~~~~~~~~D~v~~~~~~  110 (186)
T d1l3ia_          92 PEALCKIPDIDIAVVGGSG  110 (186)
T ss_dssp             HHHHTTSCCEEEEEESCCT
T ss_pred             hhcccccCCcCEEEEeCcc
Confidence            7888999999999998654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=2.1e-08  Score=90.47  Aligned_cols=88  Identities=19%  Similarity=0.353  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-----e
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-----A  301 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-----a  301 (344)
                      ..+.+.+.+++...        ...+|||||||+|.++..|++++.   .+.+.|+++.|++.|+++    +..     .
T Consensus        42 ~~~~~~l~~~l~~~--------~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~  110 (292)
T d1xvaa_          42 AEYKAWLLGLLRQH--------GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKW  110 (292)
T ss_dssp             HHHHHHHHHHHHHT--------TCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTC
T ss_pred             HHHHHHHHHHhhhc--------CCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhccccccccee
Confidence            44556666666543        236899999999999999999874   456689999999888764    221     1


Q ss_pred             EEeeccc----cCCCCCCCcccceEecc-ccccc
Q 019228          302 MIGSFAS----KQLPYPSLSFDMLHCAR-CGVDW  330 (344)
Q Consensus       302 ~~~~lda----~rLPFpD~SFDlVhcs~-~Li~W  330 (344)
                      .+..++.    ..+| +.++||+|+|.. ++.|.
T Consensus       111 ~~~~~~~~~~~~~~~-~~~~fd~v~~~~~~~~~~  143 (292)
T d1xvaa_         111 VIEEANWLTLDKDVP-AGDGFDAVICLGNSFAHL  143 (292)
T ss_dssp             EEEECCGGGHHHHSC-CTTCEEEEEECSSCGGGS
T ss_pred             eeeeccccccccccC-CCCCceEEEEecCchhhc
Confidence            2222221    1233 356899999875 34443

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.54  E-value=4.4e-08  Score=86.99  Aligned_cols=75  Identities=24%  Similarity=0.452  Sum_probs=47.0

Q ss_pred             CCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHH----HHcCCC----eEEeeccccCCCCCCCcccceEe
Q 019228          254 VRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLT----LERGLP----AMIGSFASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A----~eRGvp----a~~~~lda~rLPFpD~SFDlVhc  323 (344)
                      .++|||||||+|.++..|+++  ++.++.   .|.. .+++.|    .+.++.    .+.+++  .. +. ..+||+|++
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~---~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D~--~~-~~-~~~~D~v~~  152 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRAPHVSATV---LEMA-GTVDTARSYLKDEGLSDRVDVVEGDF--FE-PL-PRKADAIIL  152 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEE---EECT-THHHHHHHHHHHTTCTTTEEEEECCT--TS-CC-SSCEEEEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcceeEEEE---ccCH-HHHHHHHHHHHHhhcccchhhccccc--hh-hc-ccchhheee
Confidence            478999999999999999886  333322   2321 223333    233432    333432  11 22 357999999


Q ss_pred             cccccccCccccc
Q 019228          324 ARCGVDWDQKGKC  336 (344)
Q Consensus       324 s~~Li~W~~~~g~  336 (344)
                      +.++++|...+-.
T Consensus       153 ~~vlh~~~d~~~~  165 (253)
T d1tw3a2         153 SFVLLNWPDHDAV  165 (253)
T ss_dssp             ESCGGGSCHHHHH
T ss_pred             ccccccCCchhhH
Confidence            9999999766543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.4e-07  Score=86.12  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=57.7

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHH---HHHHHcCC--CeEE
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV---QLTLERGL--PAMI  303 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~I---q~A~eRGv--pa~~  303 (344)
                      ..+.|.+.|.+.....++        .+|||||||+|.++..+++++..  .+.+.|.++.++   +.+.+.+.  .+.+
T Consensus        19 r~~~y~~ai~~~~~~~~~--------~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~   88 (311)
T d2fyta1          19 RTESYRDFIYQNPHIFKD--------KVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITL   88 (311)
T ss_dssp             HHHHHHHHHHHCGGGTTT--------CEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEE
T ss_pred             HHHHHHHHHHhccccCCc--------CEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceE
Confidence            346677777765553222        58999999999999988887532  122334444443   22333343  2344


Q ss_pred             eeccccCCCCCCCcccceEecccc
Q 019228          304 GSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      ...+.+.+++++++||+|+|.-..
T Consensus        89 ~~~~~~~l~~~~~~~D~Ivse~~~  112 (311)
T d2fyta1          89 IKGKIEEVHLPVEKVDVIISEWMG  112 (311)
T ss_dssp             EESCTTTSCCSCSCEEEEEECCCB
T ss_pred             EEeeHHHhcCccccceEEEEeeee
Confidence            445678999999999999996444

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=7.9e-08  Score=84.34  Aligned_cols=86  Identities=15%  Similarity=0.098  Sum_probs=57.1

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC-eEEeec
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP-AMIGSF  306 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~l  306 (344)
                      .+..+.+.+.++++        .+|||||||+|.+++.|++. +-. -.+...|.++.+++.|+++    ++. ..+-..
T Consensus        63 ~~a~~l~~l~l~~g--------~~VLdiG~GtG~~s~~la~~~~~~-g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~  133 (213)
T d1dl5a1          63 LMALFMEWVGLDKG--------MRVLEIGGGTGYNAAVMSRVVGEK-GLVVSVEYSRKICEIAKRNVERLGIENVIFVCG  133 (213)
T ss_dssp             HHHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             hhHHHHHhhhcccc--------ceEEEecCccchhHHHHHHHhCCC-CcEEEeecchhhHHHhhhhHhhhcccccccccC
Confidence            34456667766554        58999999999999888763 100 0223356677777776654    332 222233


Q ss_pred             cccCCCCCCCcccceEecccc
Q 019228          307 ASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~~L  327 (344)
                      |+...++++++||+|+|..++
T Consensus       134 d~~~~~~~~~~fD~I~~~~~~  154 (213)
T d1dl5a1         134 DGYYGVPEFSPYDVIFVTVGV  154 (213)
T ss_dssp             CGGGCCGGGCCEEEEEECSBB
T ss_pred             chHHccccccchhhhhhhccH
Confidence            566788889999999998776

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.1e-08  Score=84.19  Aligned_cols=81  Identities=15%  Similarity=0.165  Sum_probs=55.9

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC----CC--eEEe
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LP--AMIG  304 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG----vp--a~~~  304 (344)
                      ..+.+.+.+.+...         ..+|||||||+|.++.+++++..  -++.+.|+++.+++.|+++.    ..  ...+
T Consensus        40 ~~~~~~la~~~~~~---------g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~  108 (229)
T d1zx0a1          40 TPYMHALAAAASSK---------GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG  108 (229)
T ss_dssp             HHHHHHHHHHHTTT---------CEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEES
T ss_pred             HHHHHHHHHhhccC---------CCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccc
Confidence            44555666665421         24799999999999999988753  25666889999998888763    22  2233


Q ss_pred             eccccCCCCCCCcccceE
Q 019228          305 SFASKQLPYPSLSFDMLH  322 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVh  322 (344)
                      ++.....++++++||.|+
T Consensus       109 ~~~~~~~~~~~~~fD~i~  126 (229)
T d1zx0a1         109 LWEDVAPTLPDGHFDGIL  126 (229)
T ss_dssp             CHHHHGGGSCTTCEEEEE
T ss_pred             ccccccccccccccccee
Confidence            333345688899988887

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.8e-08  Score=85.47  Aligned_cols=74  Identities=11%  Similarity=-0.055  Sum_probs=51.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC----CCe-----------------------------
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPA-----------------------------  301 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG----vpa-----------------------------  301 (344)
                      .+|||||||+|.++..++..+.  ..+.+.|+++.+++.|+++-    ...                             
T Consensus        53 ~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (257)
T d2a14a1          53 DTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  130 (257)
T ss_dssp             EEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence            4799999999999888876653  25666788888888876541    100                             


Q ss_pred             ----EEee--ccccCCCCCCCcccceEeccccccc
Q 019228          302 ----MIGS--FASKQLPYPSLSFDMLHCARCGVDW  330 (344)
Q Consensus       302 ----~~~~--lda~rLPFpD~SFDlVhcs~~Li~W  330 (344)
                          ....  .+....|+++++||+|+|..++.+-
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~  165 (257)
T d2a14a1         131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA  165 (257)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH
T ss_pred             hhcccccccccccccccccCCcccEEeehhhHHHh
Confidence                0000  1223468999999999999888544

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=2.4e-07  Score=85.34  Aligned_cols=87  Identities=17%  Similarity=0.263  Sum_probs=54.5

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccH---HHHHHHHHcCCC--eEEee
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG---SQVQLTLERGLP--AMIGS  305 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~se---a~Iq~A~eRGvp--a~~~~  305 (344)
                      ..|.+.|.+.....++        .+|||||||+|.++..+++++..  .+.+.|.++   ...+.+.+.+..  +.+..
T Consensus        24 ~~y~~aI~~~~~~~~~--------~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~   93 (328)
T d1g6q1_          24 LSYRNAIIQNKDLFKD--------KIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLR   93 (328)
T ss_dssp             HHHHHHHHHHHHHHTT--------CEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             HHHHHHHHhccccCCc--------CEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhCccccceEEE
Confidence            5566667665543223        58999999999999888887532  112223332   112233344532  33333


Q ss_pred             ccccCCCCCCCcccceEecccc
Q 019228          306 FASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+...+++++++||+|+|....
T Consensus        94 ~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          94 GKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             SCTTTSCCSSSCEEEEEECCCB
T ss_pred             eehhhccCcccceeEEEEEecc
Confidence            4577899999999999996554

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=2e-07  Score=85.60  Aligned_cols=88  Identities=16%  Similarity=0.220  Sum_probs=55.2

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCC---ceEEEcccccccHHHHHHHHHcCCC--eEEe
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLERGLP--AMIG  304 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~---V~~~sIa~~D~sea~Iq~A~eRGvp--a~~~  304 (344)
                      .+.|.+.|.+.....++        .+|||||||+|.++..+++.+   |++++..+  ......+.+...++.  +.+.
T Consensus        18 ~~~y~~ai~~~~~~~~~--------~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~--~~~~a~~~~~~n~~~~~v~~~   87 (316)
T d1oria_          18 TLTYRNSMFHNRHLFKD--------KVVLDVGSGTGILCMFAAKAGARKVIGIECSS--ISDYAVKIVKANKLDHVVTII   87 (316)
T ss_dssp             HHHHHHHHHTCHHHHTT--------CEEEEETCTTSHHHHHHHHTTCSEEEEEECST--THHHHHHHHHHTTCTTTEEEE
T ss_pred             HHHHHHHHHhccccCCc--------CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcH--HHhhhhhHHHHhCCccccceE
Confidence            35666666543322122        589999999999998888875   44444332  222222334444543  3444


Q ss_pred             eccccCCCCCCCcccceEecccc
Q 019228          305 SFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      ..+...++++.++||+|+|....
T Consensus        88 ~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          88 KGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             ESCTTTCCCSSSCEEEEEECCCB
T ss_pred             eccHHHcccccceeEEEeeeeee
Confidence            45678999999999999996444

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.40  E-value=2.3e-07  Score=85.48  Aligned_cols=88  Identities=16%  Similarity=0.169  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--eEE
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--AMI  303 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~  303 (344)
                      .+.++.+.+.+.+++|        .+|||||||.|.++.+++++ ++   .+.+..+++.|++.|.++    |+.  +.+
T Consensus        48 ~~k~~~~~~~l~l~~G--------~~VLDiGCG~G~~a~~~a~~~g~---~v~git~s~~Q~~~a~~~~~~~g~~~~v~~  116 (285)
T d1kpga_          48 IAKIDLALGKLGLQPG--------MTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRV  116 (285)
T ss_dssp             HHHHHHHHTTTTCCTT--------CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEE
T ss_pred             HHHHHHHHHHcCCCCC--------CEEEEecCcchHHHHHHHhcCCc---ceEEEeccHHHHHHHHHHHHhhhhhhhhHH
Confidence            3346666666666544        68999999999999998875 54   334456777777776654    332  233


Q ss_pred             eeccccCCCCCCCcccceEecccccccCc
Q 019228          304 GSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       304 ~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      ...|...+   +++||.|++..++-|...
T Consensus       117 ~~~d~~~~---~~~fD~i~si~~~eh~~~  142 (285)
T d1kpga_         117 LLAGWEQF---DEPVDRIVSIGAFEHFGH  142 (285)
T ss_dssp             EESCGGGC---CCCCSEEEEESCGGGTCT
T ss_pred             HHhhhhcc---cccccceeeehhhhhcCc
Confidence            33344444   478999999988876543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.37  E-value=1.3e-07  Score=84.71  Aligned_cols=79  Identities=20%  Similarity=0.319  Sum_probs=49.3

Q ss_pred             CCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHH----HcCCC--eEEeeccccCCCCCCCcccceEec
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~----eRGvp--a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      ..++|||||||+|.++..|+++  +..+   ...|+ +++++.|+    +.++.  +.+...|. .-|.| ..||+|++.
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~---~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~-~~~~p-~~~D~v~~~  154 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRG---TLVEL-AGPAERARRRFADAGLADRVTVAEGDF-FKPLP-VTADVVLLS  154 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEE---EEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCS-CCEEEEEEE
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEE---EEecC-hHHHHHHHHHHhhcCCcceeeeeeeec-ccccc-ccchhhhcc
Confidence            3578999999999999999986  3322   22444 33444443    33432  22222222 22454 459999999


Q ss_pred             ccccccCcccccc
Q 019228          325 RCGVDWDQKGKCQ  337 (344)
Q Consensus       325 ~~Li~W~~~~g~~  337 (344)
                      .+|++|...+-++
T Consensus       155 ~vLh~~~d~~~~~  167 (256)
T d1qzza2         155 FVLLNWSDEDALT  167 (256)
T ss_dssp             SCGGGSCHHHHHH
T ss_pred             ccccccCcHHHHH
Confidence            9999998765443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.27  E-value=3.8e-07  Score=82.75  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=44.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++..++..+..   +.+.|+++.+++.|++    .++...+...+.. -++++++||+|+|+
T Consensus       122 ~~VLDiGcGsG~l~i~aa~~g~~---V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~-~~~~~~~fD~V~an  191 (254)
T d2nxca1         122 DKVLDLGTGSGVLAIAAEKLGGK---ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLE-AALPFGPFDLLVAN  191 (254)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCE---EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHH-HHGGGCCEEEEEEE
T ss_pred             CEEEEcccchhHHHHHHHhcCCE---EEEEECChHHHHHHHHHHHHcCCceeEEecccc-ccccccccchhhhc
Confidence            58999999999999888877542   2345566555555543    4665544333322 35778999999986

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=6.8e-07  Score=79.13  Aligned_cols=71  Identities=13%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             CeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHHc----CC------CeEEeeccccCCCCCCCcccce
Q 019228          255 RTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER----GL------PAMIGSFASKQLPYPSLSFDML  321 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~eR----Gv------pa~~~~lda~rLPFpD~SFDlV  321 (344)
                      .+|||||||+|.+++.|++.   ..   .+.+.|.++++++.|+++    ++      ...+...|+...++++++||.|
T Consensus        78 ~~VLdiG~GsGy~ta~la~l~~~~g---~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I  154 (224)
T d1i1na_          78 AKALDVGSGSGILTACFARMVGCTG---KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  154 (224)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHhCCCc---eEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence            58999999999988887763   21   222346666666666443    21      1223333566888999999999


Q ss_pred             Eeccccc
Q 019228          322 HCARCGV  328 (344)
Q Consensus       322 hcs~~Li  328 (344)
                      ++..++.
T Consensus       155 ~~~~~~~  161 (224)
T d1i1na_         155 HVGAAAP  161 (224)
T ss_dssp             EECSBBS
T ss_pred             hhhcchh
Confidence            9987763

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.20  E-value=9.3e-07  Score=80.90  Aligned_cols=89  Identities=15%  Similarity=0.131  Sum_probs=61.1

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc------C-C-CeEEe
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER------G-L-PAMIG  304 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR------G-v-pa~~~  304 (344)
                      +..|..++.+++|        .+|||+|||+|+++..|+.. +-.+ .+...|.++++++.|++.      + . ...+.
T Consensus        85 ~s~Ii~~l~i~PG--------~~VLE~G~GsG~lt~~La~~vgp~G-~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~  155 (264)
T d1i9ga_          85 AAQIVHEGDIFPG--------ARVLEAGAGSGALTLSLLRAVGPAG-QVISYEQRADHAEHARRNVSGCYGQPPDNWRLV  155 (264)
T ss_dssp             HHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTS-EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEE
T ss_pred             HHHHHHHhCCCCC--------CEEEecCcCCcHHHHHHHHhhCCCc-EEEEecCCHHHHHHHHHhhhhhccCCCceEEEE
Confidence            4567777766554        58999999999999999874 2111 233467888888888652      1 1 23344


Q ss_pred             eccccCCCCCCCcccceEecccccccCc
Q 019228          305 SFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       305 ~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      ..|....+|++++||.|++- .--+|..
T Consensus       156 ~~d~~~~~~~~~~fDaV~ld-lp~P~~~  182 (264)
T d1i9ga_         156 VSDLADSELPDGSVDRAVLD-MLAPWEV  182 (264)
T ss_dssp             CSCGGGCCCCTTCEEEEEEE-SSCGGGG
T ss_pred             ecccccccccCCCcceEEEe-cCCHHHH
Confidence            44667789999999999973 4456644

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.18  E-value=7e-07  Score=78.33  Aligned_cols=77  Identities=12%  Similarity=0.152  Sum_probs=53.6

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCC--CCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLP--YPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLP--FpD~SFDlVhcs~~L  327 (344)
                      ..|||||||+|.++..|+++.-. ..+.+.|+++.+++.|.+    .++. +.+-..|+..|+  |++++||.|++... 
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp-  108 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS-  108 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC-
T ss_pred             ceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc-
Confidence            47999999999999999886211 133446777777665543    4654 444445677776  99999999998654 


Q ss_pred             cccCcc
Q 019228          328 VDWDQK  333 (344)
Q Consensus       328 i~W~~~  333 (344)
                      .+|...
T Consensus       109 ~P~~k~  114 (204)
T d2fcaa1         109 DPWPKK  114 (204)
T ss_dssp             CCCCSG
T ss_pred             cccchh
Confidence            488654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.13  E-value=1.6e-06  Score=75.88  Aligned_cols=77  Identities=17%  Similarity=0.269  Sum_probs=52.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-eEEeeccccCCC--CCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFASKQLP--YPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda~rLP--FpD~SFDlVhcs~~L  327 (344)
                      ..|||||||+|.++..|++..-. ..+.+.|+++.++..|.+    .+++ +.+-..|+..|+  |+++++|.|++.. -
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~-~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f-P  110 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF-S  110 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-C
T ss_pred             CeEEEEeccCCHHHHHHHHHCCC-CceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc-c
Confidence            47999999999999999886211 133446777777666544    3554 333334566776  8999999999864 4


Q ss_pred             cccCcc
Q 019228          328 VDWDQK  333 (344)
Q Consensus       328 i~W~~~  333 (344)
                      .+|...
T Consensus       111 dPw~K~  116 (204)
T d1yzha1         111 DPWPKK  116 (204)
T ss_dssp             CCCCSG
T ss_pred             ccccch
Confidence            588654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.12  E-value=3.5e-06  Score=73.93  Aligned_cols=63  Identities=13%  Similarity=0.275  Sum_probs=45.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC--CCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG--vpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      ++|||+|||+|.++..++.++..  .+.+.|.++.+++.|++.-  +.+..++  ..++   ++.||+|+|+
T Consensus        50 k~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~~~~~~~~D--~~~l---~~~fD~Vi~N  114 (197)
T d1ne2a_          50 RSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVAD--VSEI---SGKYDTWIMN  114 (197)
T ss_dssp             SEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECC--GGGC---CCCEEEEEEC
T ss_pred             CEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccccccEEEEe--hhhc---CCcceEEEeC
Confidence            68999999999998777776542  3455778888888887653  3344443  4444   4789999986

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.10  E-value=1.1e-06  Score=78.37  Aligned_cols=75  Identities=13%  Similarity=0.081  Sum_probs=50.1

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC-----CCeEEeeccccCCCCCCCcccceEecccccc
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG-----vpa~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      .+|||+|||+|+++.+|++..-. -.+.+.|+++.|++.+.++-     +..+.++. ....+|.+..||++++...+.+
T Consensus        76 ~~VLDlGcGsG~~~~~la~~~~~-g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~-~~~~~~~~~~~~v~~i~~~~~~  153 (230)
T d1g8sa_          76 SKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDA-NKPQEYANIVEKVDVIYEDVAQ  153 (230)
T ss_dssp             CEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT-TCGGGGTTTCCCEEEEEECCCS
T ss_pred             CEEEEeCEEcCHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhhhcccceEEEee-ccCcccccccceeEEeeccccc
Confidence            58999999999999999885211 13455688888887776652     22233432 2344678888888877666654


Q ss_pred             cC
Q 019228          330 WD  331 (344)
Q Consensus       330 W~  331 (344)
                      +.
T Consensus       154 ~~  155 (230)
T d1g8sa_         154 PN  155 (230)
T ss_dssp             TT
T ss_pred             hH
Confidence            43

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.03  E-value=6.1e-06  Score=73.45  Aligned_cols=82  Identities=11%  Similarity=0.010  Sum_probs=53.2

Q ss_pred             HHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc--C-CCeEEeeccccCC
Q 019228          235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--G-LPAMIGSFASKQL  311 (344)
Q Consensus       235 d~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR--G-vpa~~~~lda~rL  311 (344)
                      -.+.+.+.++++        .+|||||||+|.+++.|+...-.+   ...+.++..++.|.++  . -.+.+-..|...-
T Consensus        60 a~ml~~L~l~~g--------~~VLdIG~GsGy~ta~La~l~~~V---~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g  128 (224)
T d1vbfa_          60 IFMLDELDLHKG--------QKVLEIGTGIGYYTALIAEIVDKV---VSVEINEKMYNYASKLLSYYNNIKLILGDGTLG  128 (224)
T ss_dssp             HHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHSSEE---EEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC
T ss_pred             HHHHHHhhhccc--------ceEEEecCCCCHHHHHHHHHhccc---ccccccHHHHHHHHHHHhcccccccccCchhhc
Confidence            345666766544        589999999999999888764322   3356777777777654  1 2222222233333


Q ss_pred             CCCCCcccceEecccc
Q 019228          312 PYPSLSFDMLHCARCG  327 (344)
Q Consensus       312 PFpD~SFDlVhcs~~L  327 (344)
                      ..+.+.||.|++..++
T Consensus       129 ~~~~~pfD~Iiv~~a~  144 (224)
T d1vbfa_         129 YEEEKPYDRVVVWATA  144 (224)
T ss_dssp             CGGGCCEEEEEESSBB
T ss_pred             chhhhhHHHHHhhcch
Confidence            4456789999998776

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=3.5e-06  Score=75.08  Aligned_cols=55  Identities=16%  Similarity=0.080  Sum_probs=37.2

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE  296 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e  296 (344)
                      +..+.+.++.+.      ....++||||||+|.+...++.+.+.  .|.+.|.++.|++.+++
T Consensus        41 ~~~~~~~f~~g~------~~g~~vLDiGcG~g~~~~~~~~~~~~--~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          41 LRCLAQTFATGE------VSGRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGR   95 (263)
T ss_dssp             HHHHHHHHHTSC------SCCSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHcCCCC------CCCcEEEEeccCCCHHHHHHhcccCC--eEEEEeCCHHHHHHHHH
Confidence            455666655332      12368999999999887766655332  45567889998888764

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.97  E-value=1.2e-05  Score=69.68  Aligned_cols=65  Identities=12%  Similarity=0.103  Sum_probs=45.8

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||||.++..++.++..  .+.+.|.++.+++.|++.    ++...+-..|...+   ++.||+|+|.
T Consensus        48 ~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~n  116 (201)
T d1wy7a1          48 KVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMN  116 (201)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEEC
T ss_pred             CEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEc
Confidence            58999999999999888777642  344567888877777653    45544444444333   5679999986

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.94  E-value=5.8e-06  Score=72.24  Aligned_cols=67  Identities=16%  Similarity=0.045  Sum_probs=43.2

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----C-CCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----G-vpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++.+|++.--.+ .+.+.|+++.|++.|.++    + +..+++  ++...+.+...||.|.+.
T Consensus        58 ~~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~~~~ni~~i~~--d~~~~~~~~~~~~~vd~v  129 (209)
T d1nt2a_          58 ERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRERNNIIPLLF--DASKPWKYSGIVEKVDLI  129 (209)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHHHCSSEEEECS--CTTCGGGTTTTCCCEEEE
T ss_pred             CEEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhhccCCceEEEe--eccCccccccccceEEEE
Confidence            589999999999999988741111 345567777777766543    2 223333  456666777766666443

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=5.2e-06  Score=76.90  Aligned_cols=88  Identities=9%  Similarity=0.011  Sum_probs=52.7

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc-----------C--
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER-----------G--  298 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR-----------G--  298 (344)
                      .++.|.+.+.++++        .+|||||||+|.++..++.. +..  .+.+.|+++.+++.|.+.           |  
T Consensus       139 ~~~~~~~~~~l~~~--------~~vlD~GcG~G~~~~~~a~~~~~~--~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~  208 (328)
T d1nw3a_         139 LVAQMIDEIKMTDD--------DLFVDLGSGVGQVVLQVAAATNCK--HHYGVEKADIPAKYAETMDREFRKWMKWYGKK  208 (328)
T ss_dssp             HHHHHHHHSCCCTT--------CEEEEETCTTSHHHHHHHHHCCCS--EEEEEECSHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCCCCC--------CEEEEcCCCCCHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHhhhcccc
Confidence            34555566655443        58999999999999887653 221  223456666665555432           2  


Q ss_pred             -CCeEEeeccccCCCCCCCcccc-eEeccccccc
Q 019228          299 -LPAMIGSFASKQLPYPSLSFDM-LHCARCGVDW  330 (344)
Q Consensus       299 -vpa~~~~lda~rLPFpD~SFDl-Vhcs~~Li~W  330 (344)
                       .++.+...|...+||.++.||. |++.....++
T Consensus       209 ~~~i~~~~gd~~~~~~~~~~~~advi~~~~~~f~  242 (328)
T d1nw3a_         209 HAEYTLERGDFLSEEWRERIANTSVIFVNNFAFG  242 (328)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCSEEEECCTTTC
T ss_pred             CCceEEEECcccccccccccCcceEEEEcceecc
Confidence             2233333456789999988864 4444444444

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.84  E-value=6.9e-06  Score=74.31  Aligned_cols=75  Identities=11%  Similarity=0.222  Sum_probs=49.0

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----C-C-CeEEeeccccCCCCCCCcccceEecccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----G-L-PAMIGSFASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----G-v-pa~~~~lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .+|||+|||+|.++..|++. +-.+ .+...|.++.+++.|+++    + . .+.+...|.... +++++||+|++. ..
T Consensus        87 ~rVLEiG~GsG~lt~~la~~v~~~g-~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld-~p  163 (250)
T d1yb2a1          87 MDILEVGVGSGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYDAVIAD-IP  163 (250)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEEEEEEC-CS
T ss_pred             CEEEEeeeeCcHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccceeeeeeec-CC
Confidence            58999999999999988864 1110 234468888888888764    1 1 223333334343 788999999974 44


Q ss_pred             cccCc
Q 019228          328 VDWDQ  332 (344)
Q Consensus       328 i~W~~  332 (344)
                      -+|.-
T Consensus       164 ~p~~~  168 (250)
T d1yb2a1         164 DPWNH  168 (250)
T ss_dssp             CGGGS
T ss_pred             chHHH
Confidence            55643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.3e-05  Score=74.89  Aligned_cols=89  Identities=16%  Similarity=0.191  Sum_probs=51.3

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc---------------
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER---------------  297 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR---------------  297 (344)
                      +..|..++.+.+|        .+|||+|||+|+++..|+.. +..+ .+...|.++.+++.|++.               
T Consensus        87 ~~~Il~~l~i~pG--------~rVLE~GtGsG~lt~~LAr~vg~~G-~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~  157 (324)
T d2b25a1          87 INMILSMMDINPG--------DTVLEAGSGSGGMSLFLSKAVGSQG-RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE  157 (324)
T ss_dssp             HHHHHHHHTCCTT--------CEEEEECCTTSHHHHHHHHHHCTTC-EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSC
T ss_pred             HHHHHHHhCCCCC--------CEEEEecccccHHHHHHHHHhCCCc-EEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence            4456666766554        58999999999999999874 1110 223357777777777652               


Q ss_pred             ---CCCeEEeeccccCCCCCCCcccceEecccccccCc
Q 019228          298 ---GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       298 ---Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~W~~  332 (344)
                         .+.+..+++......+++.+||.|+. ....+|..
T Consensus       158 ~~~nv~~~~~di~~~~~~~~~~~fD~V~L-D~p~P~~~  194 (324)
T d2b25a1         158 WPDNVDFIHKDISGATEDIKSLTFDAVAL-DMLNPHVT  194 (324)
T ss_dssp             CCCCEEEEESCTTCCC-------EEEEEE-CSSSTTTT
T ss_pred             cccceeEEecchhhcccccCCCCcceEee-cCcCHHHH
Confidence               12234444432223457889999987 44556654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.68  E-value=1.6e-05  Score=70.43  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=46.8

Q ss_pred             CeEEEECCccchhhHHHhhC----Cc-eEEEcccccccHHHHHHHHHc---------CC-CeEEeeccccCCCCCCCccc
Q 019228          255 RTILDIGCGYGSFGAHLFSK----EL-LTMCIANYEASGSQVQLTLER---------GL-PAMIGSFASKQLPYPSLSFD  319 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer----~V-~~~sIa~~D~sea~Iq~A~eR---------Gv-pa~~~~lda~rLPFpD~SFD  319 (344)
                      .+|||||||+|.+++.|++.    ++ ....+...+.+++.+++|.++         ++ .+.+-..|......+.+.||
T Consensus        82 ~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD  161 (223)
T d1r18a_          82 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYN  161 (223)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEE
T ss_pred             CeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccccccccee
Confidence            58999999999999887653    21 001223346666666666443         11 22333335566677788999


Q ss_pred             ceEeccccc
Q 019228          320 MLHCARCGV  328 (344)
Q Consensus       320 lVhcs~~Li  328 (344)
                      .|++..++-
T Consensus       162 ~Iiv~~a~~  170 (223)
T d1r18a_         162 AIHVGAAAP  170 (223)
T ss_dssp             EEEECSCBS
T ss_pred             eEEEEeech
Confidence            999987763

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.60  E-value=5.6e-05  Score=66.65  Aligned_cols=81  Identities=17%  Similarity=0.207  Sum_probs=52.4

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHH----cCCC-eEEee
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLE----RGLP-AMIGS  305 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~  305 (344)
                      +..+.+.+.++++        .+|||||||+|.+++.|+..   .|+++     +..+..+++|.+    .++. +.+-.
T Consensus        67 ~a~ml~~L~l~~g--------~~VLeIGsGsGY~taila~l~g~~V~~i-----e~~~~l~~~a~~~l~~~g~~nv~~~~  133 (215)
T d1jg1a_          67 VAIMLEIANLKPG--------MNILEVGTGSGWNAALISEIVKTDVYTI-----ERIPELVEFAKRNLERAGVKNVHVIL  133 (215)
T ss_dssp             HHHHHHHHTCCTT--------CCEEEECCTTSHHHHHHHHHHCSCEEEE-----ESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHhhccCcc--------ceEEEecCCCChhHHHHHHhhCceeEEE-----eccHHHHHHHHHHHHHcCCceeEEEE
Confidence            4556677776554        47999999999999887753   34443     444445554443    3432 33333


Q ss_pred             ccccCCCCCCCcccceEecccc
Q 019228          306 FASKQLPYPSLSFDMLHCARCG  327 (344)
Q Consensus       306 lda~rLPFpD~SFDlVhcs~~L  327 (344)
                      .|......+.+.||.|++..+.
T Consensus       134 gd~~~g~~~~~pfD~Iiv~~a~  155 (215)
T d1jg1a_         134 GDGSKGFPPKAPYDVIIVTAGA  155 (215)
T ss_dssp             SCGGGCCGGGCCEEEEEECSBB
T ss_pred             CccccCCcccCcceeEEeeccc
Confidence            3445556678999999998766

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.58  E-value=4.3e-05  Score=69.20  Aligned_cols=87  Identities=23%  Similarity=0.258  Sum_probs=55.4

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--eEEeec
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--AMIGSF  306 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~l  306 (344)
                      +..|...+.+.+|        .+|||+|||+|.++..|++. +-. -.+...|.++.+++.|++.    ++.  ..+...
T Consensus        92 ~~~Ii~~l~i~pG--------~~VLDiG~GsG~lt~~lA~~~~~~-G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~  162 (266)
T d1o54a_          92 SSFIAMMLDVKEG--------DRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR  162 (266)
T ss_dssp             HHHHHHHTTCCTT--------CEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC
T ss_pred             HHHHHHhhCCCCC--------CEEEECCCCCCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHhccccCcEEEec
Confidence            4456677766554        58999999999999998764 111 1334468888888887654    432  122111


Q ss_pred             cccCCCCCCCcccceEecccccccC
Q 019228          307 ASKQLPYPSLSFDMLHCARCGVDWD  331 (344)
Q Consensus       307 da~rLPFpD~SFDlVhcs~~Li~W~  331 (344)
                      | -..+|+...||.|+.. .-.+|.
T Consensus       163 d-~~~~~~~~~~D~V~~d-~p~p~~  185 (266)
T d1o54a_         163 D-ISEGFDEKDVDALFLD-VPDPWN  185 (266)
T ss_dssp             C-GGGCCSCCSEEEEEEC-CSCGGG
T ss_pred             c-ccccccccceeeeEec-CCCHHH
Confidence            2 2356888999999874 333453

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.56  E-value=2.9e-05  Score=68.96  Aligned_cols=69  Identities=13%  Similarity=0.139  Sum_probs=43.8

Q ss_pred             CeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----C-CCeEEeec-cccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----G-LPAMIGSF-ASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----G-vpa~~~~l-da~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|+++.+|++. +-.+ .+.+.|+++.+++.++++    + +..++.+. .....++....||+|++.
T Consensus        75 ~~VLDlGaGsG~~t~~la~~VG~~G-~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~d  150 (227)
T d1g8aa_          75 KSVLYLGIASGTTASHVSDIVGWEG-KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CEEEEeccCCCHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEEE
Confidence            58999999999999999874 1111 223356777777665543    2 22334432 223455667889999875

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=9.6e-05  Score=67.45  Aligned_cols=66  Identities=20%  Similarity=0.248  Sum_probs=44.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-e--EEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-A--MIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a--~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|..+..|+...-. ..+.+.|+++..++.|++.    ++. +  ..+++   --+++++.||+|+|+
T Consensus       110 ~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~---~~~~~~~~fDlIvsN  182 (274)
T d2b3ta1         110 CRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW---FSALAGQQFAMIVSN  182 (274)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST---TGGGTTCCEEEEEEC
T ss_pred             cceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccc---ccccCCCceeEEEec
Confidence            47999999999999888764211 1334467777777666542    443 3  33432   226778899999997

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00024  Score=63.36  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=55.1

Q ss_pred             hhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEE
Q 019228          230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMI  303 (344)
Q Consensus       230 ~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~  303 (344)
                      -..|+..|.+++....   .......++||+|||+|..+..|+.+.- ...+.+.|+++..++.|++-    ++.  ..+
T Consensus        41 r~~~~~~i~~l~~~~~---~~~~~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~  116 (250)
T d2h00a1          41 RLNYIHWVEDLIGHQD---SDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKV  116 (250)
T ss_dssp             HHHHHHHHHHHHCCCC---GGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             HHHHHHHHHHHhhhhc---cCccccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceee
Confidence            3446777777775321   1112345899999999999988877511 12344567777777766543    332  222


Q ss_pred             eeccccC------CCCCCCcccceEecccccccCc
Q 019228          304 GSFASKQ------LPYPSLSFDMLHCARCGVDWDQ  332 (344)
Q Consensus       304 ~~lda~r------LPFpD~SFDlVhcs~~Li~W~~  332 (344)
                      ...+...      ....++.||+|+|+   -++.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~fD~ivsN---PPY~~  148 (250)
T d2h00a1         117 VKVPQKTLLMDALKEESEIIYDFCMCN---PPFFA  148 (250)
T ss_dssp             EECCTTCSSTTTSTTCCSCCBSEEEEC---CCCC-
T ss_pred             eeeccHHhhhhhhhhcccCceeEEEec---Ccccc
Confidence            1111111      13346789999997   35553

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.36  E-value=4.8e-05  Score=62.60  Aligned_cols=68  Identities=12%  Similarity=0.176  Sum_probs=45.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccC-CCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~r-LPFpD~SFDlVhcs  324 (344)
                      .+|||+|||||.++...+.+++.  .+...|.++..++.+++.    ++.  ..+-..|+.. ++...+.||+|++-
T Consensus        16 ~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          16 GRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEec
Confidence            58999999999999888888653  444566666666554432    332  2222233333 56788999999984

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.36  E-value=0.00012  Score=61.59  Aligned_cols=67  Identities=22%  Similarity=0.197  Sum_probs=45.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCCeEEeeccc----cCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFAS----KQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvpa~~~~lda----~rLPFpD~SFDlVhcs  324 (344)
                      .+|||+|||+|.++...+.++..++   ..|.++.+++.+++    .++...+...++    ..+......||+|++-
T Consensus        43 ~~vLDl~~G~G~~~i~a~~~ga~vv---~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D  117 (171)
T d1ws6a1          43 GRFLDPFAGSGAVGLEAASEGWEAV---LVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             CEEEEETCSSCHHHHHHHHTTCEEE---EECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeEEEeccccchhhhhhhhccchhh---hcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence            4799999999999998888876433   36888887776653    255433322222    2235567889999974

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.32  E-value=0.0004  Score=62.33  Aligned_cols=98  Identities=10%  Similarity=0.127  Sum_probs=61.1

Q ss_pred             ccceeeecCCCccc-cchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHH
Q 019228          214 EEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ  292 (344)
Q Consensus       214 eg~~~~FpGggt~F-~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq  292 (344)
                      +|-++.+.-..+|| .+.......|.+.+..  |        .+|||+|||+|.|+..++.++.  ..+.+.|+++..++
T Consensus        77 ~g~~~~~d~~~~~f~~~~~~er~ri~~~~~~--g--------~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~  144 (260)
T d2frna1          77 NGIKYKLDVAKIMFSPANVKERVRMAKVAKP--D--------ELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFK  144 (260)
T ss_dssp             TTEEEEEETTTSCCCGGGHHHHHHHHHHCCT--T--------CEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHH
T ss_pred             cCeeEEeccccccEecCCHHHHHHHHhhcCC--c--------cEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHH
Confidence            45455555445677 3444444556666542  2        5899999999999998887642  13344677777666


Q ss_pred             HHHHc----CCC--eEEeeccccCCCCCCCcccceEec
Q 019228          293 LTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       293 ~A~eR----Gvp--a~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+++.    ++.  +.+-..|+..++ +.+.||.|++.
T Consensus       145 ~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~  181 (260)
T d2frna1         145 FLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMG  181 (260)
T ss_dssp             HHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred             HHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEEC
Confidence            65542    442  333334566664 35789999875

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.30  E-value=3.4e-05  Score=68.89  Aligned_cols=77  Identities=18%  Similarity=0.287  Sum_probs=48.3

Q ss_pred             CCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHH-cCCCeEEeeccccCCCCCCCcccceEecccccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLE-RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~e-RGvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      ..++|||||||+|.++..++++  ++.+   ...|+.+ .++.+.. .++..+-+++ -  -|.|  ..|+|++.++|++
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~---~v~Dlp~-vi~~~~~~~ri~~~~gd~-~--~~~p--~~D~~~l~~vLh~  151 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKG---INFDLPQ-VIENAPPLSGIEHVGGDM-F--ASVP--QGDAMILKAVCHN  151 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECHH-HHTTCCCCTTEEEEECCT-T--TCCC--CEEEEEEESSGGG
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeE---EEecchh-hhhccCCCCCeEEecCCc-c--cccc--cceEEEEehhhhh
Confidence            4579999999999999999876  3322   2234422 2221111 1233444554 1  2444  3499999999999


Q ss_pred             cCccccccc
Q 019228          330 WDQKGKCQK  338 (344)
Q Consensus       330 W~~~~g~~~  338 (344)
                      |.+++.+++
T Consensus       152 ~~de~~~~i  160 (244)
T d1fp1d2         152 WSDEKCIEF  160 (244)
T ss_dssp             SCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            988776553

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.21  E-value=0.00018  Score=66.27  Aligned_cols=68  Identities=19%  Similarity=0.246  Sum_probs=46.3

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--e--EEeec-c-ccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--A--MIGSF-A-SKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a--~~~~l-d-a~rLPFpD~SFDlVhcs  324 (344)
                      .+|||++||||.++..++..+..  .+...|.++..++.|++.    |+.  .  ..+++ + ...++....+||+|++-
T Consensus       147 ~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D  224 (324)
T d2as0a2         147 DRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  224 (324)
T ss_dssp             CEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence            58999999999999999887642  344567777777666543    552  2  23331 0 12356678899999984

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.0009  Score=61.01  Aligned_cols=100  Identities=16%  Similarity=0.252  Sum_probs=59.3

Q ss_pred             cccceeeecCCCccc--c--chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccH
Q 019228          213 LEEEQISFRSASLIF--D--GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG  288 (344)
Q Consensus       213 ~eg~~~~FpGggt~F--~--g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~se  288 (344)
                      ..|-.+.++ -+.||  |  .++..++.+.+++...+        ..+|||+-||+|+|+..|+++.-.+   .+.+.++
T Consensus       177 ~~g~~~~i~-p~sFfQ~N~~~~e~l~~~v~~~~~~~~--------~~~vlDLycG~G~fsl~La~~~~~V---~gvE~~~  244 (358)
T d1uwva2         177 SNGLRLTFS-PRDFIQVNAGVNQKMVARALEWLDVQP--------EDRVLDLFCGMGNFTLPLATQAASV---VGVEGVP  244 (358)
T ss_dssp             ETTEEEECC-SSSCCCSBHHHHHHHHHHHHHHHTCCT--------TCEEEEESCTTTTTHHHHHTTSSEE---EEEESCH
T ss_pred             cCCEEEEEC-CchhhccchhhhhHHHHHHHHhhccCC--------CceEEEecccccccchhccccccEE---EeccCcH
Confidence            334344443 34677  3  45666788888876533        3589999999999999999873222   2234555


Q ss_pred             HHHHHHHH----cCCC---eEEeecc--ccCCCCCCCcccceEec
Q 019228          289 SQVQLTLE----RGLP---AMIGSFA--SKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       289 a~Iq~A~e----RGvp---a~~~~ld--a~rLPFpD~SFDlVhcs  324 (344)
                      ..++.|++    .++.   +..++..  ...++.....||+|+.-
T Consensus       245 ~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD  289 (358)
T d1uwva2         245 ALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  289 (358)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             HHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeC
Confidence            55554433    3553   2333321  12344556789988763

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.04  E-value=5.6e-05  Score=67.88  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=54.3

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---CCeEEeecc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA  307 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~ld  307 (344)
                      ...++.|.+.+....+        .+||+||||+|.++..|++++...+.   .+.++.+++.+.++.   ..+.+-..|
T Consensus        15 ~~ii~kIv~~~~~~~~--------d~VLEIGpG~G~LT~~L~~~~~~v~a---IE~D~~l~~~l~~~~~~~~n~~ii~~D   83 (245)
T d1yuba_          15 EKVLNQIIKQLNLKET--------DTVYEIGTGKGHLTTKLAKISKQVTS---IELDSHLFNLSSEKLKLNTRVTLIHQD   83 (245)
T ss_dssp             TTTHHHHHHHCCCCSS--------EEEEECSCCCSSCSHHHHHHSSEEEE---SSSSCSSSSSSSCTTTTCSEEEECCSC
T ss_pred             HHHHHHHHHhcCCCCC--------CeEEEECCCccHHHHHHHhhcCceeE---eeecccchhhhhhhhhhccchhhhhhh
Confidence            3447778887765432        58999999999999999987533222   344444444444432   123344456


Q ss_pred             ccCCCCCCCcccceEec
Q 019228          308 SKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       308 a~rLPFpD~SFDlVhcs  324 (344)
                      +..++++...++.|+++
T Consensus        84 ~l~~~~~~~~~~~vv~N  100 (245)
T d1yuba_          84 ILQFQFPNKQRYKIVGN  100 (245)
T ss_dssp             CTTTTCCCSSEEEEEEE
T ss_pred             hhccccccceeeeEeee
Confidence            78889998888877765

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.03  E-value=0.00062  Score=60.35  Aligned_cols=82  Identities=17%  Similarity=0.198  Sum_probs=53.3

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCC---CeEEeecc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFA  307 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGv---pa~~~~ld  307 (344)
                      +..++.|.+.+....+        .+||+||||+|.++..|++++..   +...+.++.+++...++..   .+.+-..|
T Consensus         7 ~~i~~~iv~~~~~~~~--------d~VlEIGpG~G~LT~~Ll~~~~~---v~avE~D~~l~~~l~~~~~~~~n~~i~~~D   75 (235)
T d1qama_           7 KHNIDKIMTNIRLNEH--------DNIFEIGSGKGHFTLELVQRCNF---VTAIEIDHKLCKTTENKLVDHDNFQVLNKD   75 (235)
T ss_dssp             HHHHHHHHTTCCCCTT--------CEEEEECCTTSHHHHHHHHHSSE---EEEECSCHHHHHHHHHHTTTCCSEEEECCC
T ss_pred             HHHHHHHHHhcCCCCC--------CeEEEECCCchHHHHHHHhCcCc---eEEEeeccchHHHHHHHhhcccchhhhhhh
Confidence            4456777777655433        58999999999999999987532   3335667777777666532   23444446


Q ss_pred             ccCCCCCCCcccceEe
Q 019228          308 SKQLPYPSLSFDMLHC  323 (344)
Q Consensus       308 a~rLPFpD~SFDlVhc  323 (344)
                      +..++++......|++
T Consensus        76 ~l~~~~~~~~~~~vv~   91 (235)
T d1qama_          76 ILQFKFPKNQSYKIFG   91 (235)
T ss_dssp             GGGCCCCSSCCCEEEE
T ss_pred             hhhccccccccceeee
Confidence            6677777655444444

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.00032  Score=67.37  Aligned_cols=55  Identities=16%  Similarity=0.222  Sum_probs=35.6

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER  297 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR  297 (344)
                      .+.+|.+.+.++++        .++||||||+|.++..++.. ++.  .+.+.|+++.+++.|.++
T Consensus       204 ~i~~Il~~l~Lkpg--------d~fLDLGCG~G~~vl~aA~~~g~~--~v~GIDiS~~~i~~Ak~~  259 (406)
T d1u2za_         204 FLSDVYQQCQLKKG--------DTFMDLGSGVGNCVVQAALECGCA--LSFGCEIMDDASDLTILQ  259 (406)
T ss_dssp             HHHHHHHHTTCCTT--------CEEEEESCTTSHHHHHHHHHHCCS--EEEEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCC--------CEEEeCCCCCcHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHH
Confidence            35555565655543        58999999999999888765 321  223456666666666543

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.95  E-value=0.00044  Score=58.98  Aligned_cols=77  Identities=10%  Similarity=0.110  Sum_probs=48.6

Q ss_pred             eEEEECCccch----hhHHHhhC----CceEEEcccccccHHHHHHHHHc--------CCCe------------------
Q 019228          256 TILDIGCGYGS----FGAHLFSK----ELLTMCIANYEASGSQVQLTLER--------GLPA------------------  301 (344)
Q Consensus       256 ~VLDVGCGtGs----faa~Laer----~V~~~sIa~~D~sea~Iq~A~eR--------Gvpa------------------  301 (344)
                      +|+++|||||.    ++..|.+.    .. -+.|.+.|+++..++.|.+-        +++.                  
T Consensus        27 rIwsaGCstGeE~YSlA~~l~e~~~~~~~-~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~~  105 (193)
T d1af7a2          27 RVWSAAASTGEEPYSIAITLADALGMAPG-RWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV  105 (193)
T ss_dssp             EEEESCCTTTHHHHHHHHHHHHHHCSCTT-SEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred             EEEEeCCCCchhHHHHHHHHHHhhhhcCC-ceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcccee
Confidence            79999999994    55555542    11 24677789999888888632        1110                  


Q ss_pred             ----------EEeeccc-cCCCCCCCcccceEecccccccCcc
Q 019228          302 ----------MIGSFAS-KQLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       302 ----------~~~~lda-~rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                                .+...+. ...|.+.+.||+|+|.++|+..++.
T Consensus       106 ~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~  148 (193)
T d1af7a2         106 RVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT  148 (193)
T ss_dssp             EECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH
T ss_pred             ehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHH
Confidence                      0000000 1123456889999999999987764

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.88  E-value=7.1e-05  Score=66.68  Aligned_cols=77  Identities=18%  Similarity=0.275  Sum_probs=49.2

Q ss_pred             CCCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc-CCCeEEeeccccCCCCCCCcccceEeccccc
Q 019228          252 AGVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGV  328 (344)
Q Consensus       252 ~~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li  328 (344)
                      .+.++|||||||+|.++..++++  +..   +...|+.+ .++.+... ++.++-+++- +  |.|  .+|++++.++|+
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~---~~v~Dlp~-vi~~~~~~~rv~~~~gD~f-~--~~p--~aD~~~l~~vLH  149 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLK---CIVFDRPQ-VVENLSGSNNLTYVGGDMF-T--SIP--NADAVLLKYILH  149 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHH-HHTTCCCBTTEEEEECCTT-T--CCC--CCSEEEEESCGG
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCe---EEEecCHH-HHHhCcccCceEEEecCcc-c--CCC--CCcEEEEEeecc
Confidence            34678999999999999998886  332   23345432 23322111 2444555542 1  333  579999999999


Q ss_pred             ccCcccccc
Q 019228          329 DWDQKGKCQ  337 (344)
Q Consensus       329 ~W~~~~g~~  337 (344)
                      +|.+.+.++
T Consensus       150 dw~d~~~~~  158 (244)
T d1fp2a2         150 NWTDKDCLR  158 (244)
T ss_dssp             GSCHHHHHH
T ss_pred             cCChHHHHH
Confidence            999876544

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00044  Score=58.46  Aligned_cols=68  Identities=15%  Similarity=0.096  Sum_probs=42.4

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-eEEeeccc-cCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-AMIGSFAS-KQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-a~~~~lda-~rLPFpD~SFDlVhcs  324 (344)
                      .++||++||+|+++...+.+++.  .+...|.+...++.+++    .++. ..+-..|+ .-|.-.+..||+|++-
T Consensus        45 ~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~D  118 (183)
T d2fpoa1          45 AQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVD  118 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred             hhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEc
Confidence            47999999999999998888753  23335666655554443    2332 22211122 2344567889999985

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.67  E-value=0.00048  Score=63.27  Aligned_cols=67  Identities=19%  Similarity=0.201  Sum_probs=46.0

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC-eEEeeccc----cCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFAS----KQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp-a~~~~lda----~rLPFpD~SFDlVhcs  324 (344)
                      .+|||++||||.|+..++..+   .++...|.++.+++.|++.    |+. ..+-..|+    +.++...++||+|++-
T Consensus       147 ~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         147 ERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             EEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            589999999999998887532   3455678888877776643    553 32222222    2356678899999974

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.46  E-value=0.0014  Score=56.33  Aligned_cols=82  Identities=13%  Similarity=0.129  Sum_probs=54.3

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC------CCeEEeec
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSF  306 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG------vpa~~~~l  306 (344)
                      .++.+.+++...++        .++||++||+|.++..++++--. ..+.+.|.++.+++.|.++-      +.+..+.+
T Consensus        11 ll~evi~~l~~~~~--------~~~lD~t~G~Gghs~~il~~~~~-~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f   81 (192)
T d1m6ya2          11 MVREVIEFLKPEDE--------KIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY   81 (192)
T ss_dssp             THHHHHHHHCCCTT--------CEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG
T ss_pred             HHHHHHHhhCCCCC--------CEEEEecCCCcHHHHHHHhcCCC-CeEEEeechHHHHHHHHHhhccccccccchhHHH
Confidence            35667777765443        58999999999999998886211 24566899999999998762      22333332


Q ss_pred             c---ccCCCCCCCcccceEe
Q 019228          307 A---SKQLPYPSLSFDMLHC  323 (344)
Q Consensus       307 d---a~rLPFpD~SFDlVhc  323 (344)
                      .   ...-.+..++||.|+.
T Consensus        82 ~~~~~~~~~~~~~~vdgIl~  101 (192)
T d1m6ya2          82 READFLLKTLGIEKVDGILM  101 (192)
T ss_dssp             GGHHHHHHHTTCSCEEEEEE
T ss_pred             hhHHHHHHHcCCCCcceeee
Confidence            1   1112455688888864

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.25  E-value=0.0065  Score=54.55  Aligned_cols=69  Identities=13%  Similarity=0.121  Sum_probs=44.2

Q ss_pred             CeEEEECCccchhhHHHhh----CCceEEEcccccccHHHHHHHHHc----CCCeEEeeccccCCCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFS----KELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Lae----r~V~~~sIa~~D~sea~Iq~A~eR----Gvpa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+|||.+||+|.|...+.+    +......+.+.|+++.+++.|+..    +........+. -...+...||+|++.
T Consensus       119 ~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~~~~~fD~vi~N  195 (328)
T d2f8la1         119 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDG-LANLLVDPVDVVISD  195 (328)
T ss_dssp             EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCT-TSCCCCCCEEEEEEE
T ss_pred             CEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccc-ccccccccccccccC
Confidence            4799999999999876643    332334556677777777666532    44333322222 234567899999997

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.13  E-value=0.0046  Score=57.15  Aligned_cols=66  Identities=12%  Similarity=0.045  Sum_probs=44.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC---eEEeecccc----CCCCCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASK----QLPYPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp---a~~~~lda~----rLPFpD~SFDlVhc  323 (344)
                      .+|||+.||||.|+..++..+..   +...|.++..++.|++.    ++.   +.+-..|+.    ++....+.||+|++
T Consensus       134 ~rVLdlf~~tG~~sl~aa~~GA~---V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil  210 (309)
T d2igta1         134 LKVLNLFGYTGVASLVAAAAGAE---VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  210 (309)
T ss_dssp             CEEEEETCTTCHHHHHHHHTTCE---EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CeEEEecCCCcHHHHHHHhCCCe---EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence            58999999999999999888753   34478888888777652    332   222222221    22335678999997

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.90  E-value=0.0013  Score=57.83  Aligned_cols=76  Identities=17%  Similarity=0.333  Sum_probs=44.7

Q ss_pred             CCCeEEEECCccchhhHHHhhC--CceEEEcccccccHHHHHHHHHc-CCCeEEeeccccCCCCCCCcccceEecccccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD  329 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer--~V~~~sIa~~D~sea~Iq~A~eR-Gvpa~~~~lda~rLPFpD~SFDlVhcs~~Li~  329 (344)
                      +.++|||||||+|.++..|+++  +..++-   .|+.+ .++.+.+. .+....+++ -+  |.|.  -|+++...+++.
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v---~Dlp~-vi~~~~~~~r~~~~~~d~-~~--~~P~--ad~~~l~~vlh~  151 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGIN---FDLPH-VIEDAPSYPGVEHVGGDM-FV--SIPK--ADAVFMKWICHD  151 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEE---EECTT-TTTTCCCCTTEEEEECCT-TT--CCCC--CSCEECSSSSTT
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEE---cccHH-hhhhcccCCceEEecccc-cc--cCCC--cceEEEEEEeec
Confidence            3578999999999999999886  332222   23321 12222111 122334443 12  4443  477788899999


Q ss_pred             cCcccccc
Q 019228          330 WDQKGKCQ  337 (344)
Q Consensus       330 W~~~~g~~  337 (344)
                      |...+-++
T Consensus       152 ~~d~~~~~  159 (243)
T d1kyza2         152 WSDEHCLK  159 (243)
T ss_dssp             SCHHHHHH
T ss_pred             CCHHHHHH
Confidence            98765443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.75  E-value=0.00093  Score=55.76  Aligned_cols=79  Identities=14%  Similarity=0.182  Sum_probs=42.0

Q ss_pred             HHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcCCCeEEeeccccCCC
Q 019228          233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP  312 (344)
Q Consensus       233 yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRGvpa~~~~lda~rLP  312 (344)
                      ..+.+.+++....+        .+|||.|||+|.|...++++......+.+.|+.+..+..+  +......++.  . ..
T Consensus         7 i~~~m~~l~~~~~~--------~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~--~~~~~~~~~~--~-~~   73 (223)
T d2ih2a1           7 VVDFMVSLAEAPRG--------GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--PWAEGILADF--L-LW   73 (223)
T ss_dssp             HHHHHHHHCCCCTT--------CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--TTEEEEESCG--G-GC
T ss_pred             HHHHHHHhcCCCCc--------CEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc--ccceeeeeeh--h-cc
Confidence            45667777654332        5899999999999877765311111222334333221111  1111233332  1 23


Q ss_pred             CCCCcccceEec
Q 019228          313 YPSLSFDMLHCA  324 (344)
Q Consensus       313 FpD~SFDlVhcs  324 (344)
                      .+...||+|++.
T Consensus        74 ~~~~~fd~ii~n   85 (223)
T d2ih2a1          74 EPGEAFDLILGN   85 (223)
T ss_dssp             CCSSCEEEEEEC
T ss_pred             ccccccceeccc
Confidence            356789999986

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=95.65  E-value=0.0047  Score=56.70  Aligned_cols=68  Identities=13%  Similarity=0.161  Sum_probs=38.7

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC-----eEEeec-cc-cCCCCCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP-----AMIGSF-AS-KQLPYPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp-----a~~~~l-da-~rLPFpD~SFDlVhc  323 (344)
                      ++|||+.||||.|+..++..+..  .+...|.++..++.|++    .++.     ++.+++ +. +++.-..+.||+|++
T Consensus       146 ~~VLdlf~~~G~~sl~aa~~ga~--~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~  223 (317)
T d2b78a2         146 KTVLNLFSYTAAFSVAAAMGGAM--ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  223 (317)
T ss_dssp             CEEEEETCTTTHHHHHHHHTTBS--EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CceeecCCCCcHHHHHHHhCCCc--eEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence            58999999999999887765431  11223444444444332    3442     233332 10 123335678999997


Q ss_pred             c
Q 019228          324 A  324 (344)
Q Consensus       324 s  324 (344)
                      -
T Consensus       224 D  224 (317)
T d2b78a2         224 D  224 (317)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=95.52  E-value=0.0071  Score=54.65  Aligned_cols=84  Identities=21%  Similarity=0.360  Sum_probs=51.3

Q ss_pred             chhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc----CCC--e
Q 019228          229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GLP--A  301 (344)
Q Consensus       229 g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a  301 (344)
                      ..+..++.+.+.+...        ...++||+|||+|..+..+++. +.   .+.+.|+++..++.|++.    ++.  .
T Consensus        94 eTE~lv~~~~~~~~~~--------~~~~vld~g~GsG~i~~~la~~~~~---~v~a~Dis~~Al~~A~~Na~~~~~~~~~  162 (271)
T d1nv8a_          94 ETEELVELALELIRKY--------GIKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRF  162 (271)
T ss_dssp             THHHHHHHHHHHHHHH--------TCCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSE
T ss_pred             hhhhhhhhhhhhhccc--------cccEEEEeeeeeehhhhhhhhcccc---eeeechhhhhHHHHHHHHHHHcCCCcee
Confidence            4455666666665421        2458999999999888777654 22   334467777777666542    442  2


Q ss_pred             E--EeeccccCCCCCCCcccceEec
Q 019228          302 M--IGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       302 ~--~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .  .+++ ...++...+.||+|+|+
T Consensus       163 ~i~~~~~-~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         163 FVRKGEF-LEPFKEKFASIEMILSN  186 (271)
T ss_dssp             EEEESST-TGGGGGGTTTCCEEEEC
T ss_pred             EEeeccc-ccccccccCcccEEEEc
Confidence            2  2222 12233334799999997

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.02  E-value=0.015  Score=50.19  Aligned_cols=68  Identities=19%  Similarity=0.238  Sum_probs=41.5

Q ss_pred             CCeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHH----cCC----CeEEeecc--ccCC--CCCCCcc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLE----RGL----PAMIGSFA--SKQL--PYPSLSF  318 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~e----RGv----pa~~~~ld--a~rL--PFpD~SF  318 (344)
                      .++||+||||+|..+.+|++.   +...++   .|..+.+++.|++    .|+    ....++..  ...|  .+..++|
T Consensus        57 pk~ILEiGt~~G~Sti~la~al~~~g~v~s---id~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          57 PSLVLELGAYCGYSAVRMARLLQPGARLLT---MEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEE---EESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             CCEEEEEccCchhHHHHHHHhCCCccEEEE---EeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            468999999999999888764   333333   4555555555543    253    33444321  0122  3567899


Q ss_pred             cceEec
Q 019228          319 DMLHCA  324 (344)
Q Consensus       319 DlVhcs  324 (344)
                      |+|+.-
T Consensus       134 D~ifiD  139 (214)
T d2cl5a1         134 DMVFLD  139 (214)
T ss_dssp             EEEEEC
T ss_pred             ceeeec
Confidence            999875

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.32  E-value=0.046  Score=45.74  Aligned_cols=68  Identities=16%  Similarity=0.188  Sum_probs=42.5

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc----CCC--eEEeeccccC----CCCCCCcccceEec
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ----LPYPSLSFDMLHCA  324 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR----Gvp--a~~~~lda~r----LPFpD~SFDlVhcs  324 (344)
                      .+|||+.||+|.++...+.+++.  .+...|.+...++.+++.    +..  +.+-..|+.+    +.-....||+|++-
T Consensus        43 ~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD  120 (182)
T d2fhpa1          43 GMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  120 (182)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence            58999999999999999888753  334456666666555432    332  2232223322    22245679999874

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.054  Score=48.06  Aligned_cols=56  Identities=11%  Similarity=0.049  Sum_probs=39.2

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER  297 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR  297 (344)
                      ...++.|.+.+....        ...||.||||+|.++..|++++...   ...+.++.+++...++
T Consensus         7 ~~~~~~Iv~~~~~~~--------~d~vlEIGpG~G~LT~~Ll~~~~~v---~aiEiD~~l~~~L~~~   62 (252)
T d1qyra_           7 QFVIDSIVSAINPQK--------GQAMVEIGPGLAALTEPVGERLDQL---TVIELDRDLAARLQTH   62 (252)
T ss_dssp             HHHHHHHHHHHCCCT--------TCCEEEECCTTTTTHHHHHTTCSCE---EEECCCHHHHHHHHTC
T ss_pred             HHHHHHHHHhcCCCC--------CCEEEEECCCchHHHHHHHccCCce---EEEEeccchhHHHHHH
Confidence            445777888776543        3579999999999999999975432   2356666666655544

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.031  Score=48.46  Aligned_cols=67  Identities=15%  Similarity=0.065  Sum_probs=38.9

Q ss_pred             CCeEEEECCccchhhHHHhhC---CceEEEcccccccHHHHHHHHH----cCC----CeEEeeccccCCC-----CCCCc
Q 019228          254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLE----RGL----PAMIGSFASKQLP-----YPSLS  317 (344)
Q Consensus       254 ir~VLDVGCGtGsfaa~Laer---~V~~~sIa~~D~sea~Iq~A~e----RGv----pa~~~~lda~rLP-----FpD~S  317 (344)
                      .++||+||||+|.-+.++++.   +...+++   |.++...+.|++    .|+    ....+++ .+.||     ..+++
T Consensus        60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~ti---e~~~~~~~~A~~~~~~ag~~~~i~~~~Gda-~e~l~~~~~~~~~~~  135 (219)
T d2avda1          60 AKKALDLGTFTGYSALALALALPADGRVVTC---EVDAQPPELGRPLWRQAEAEHKIDLRLKPA-LETLDELLAAGEAGT  135 (219)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEE---ESCSHHHHHHHHHHHHTTCTTTEEEEESCH-HHHHHHHHHTTCTTC
T ss_pred             CCeEEEEechhhHHHHHHHHhCCCCceEEEE---eechhHHHHHHHHHHhcCccceEEEEEeeh-hhcchhhhhhcccCC
Confidence            478999999999989888864   3333343   333333333332    243    2344432 11122     34778


Q ss_pred             ccceEec
Q 019228          318 FDMLHCA  324 (344)
Q Consensus       318 FDlVhcs  324 (344)
                      ||+|+.-
T Consensus       136 fD~ifiD  142 (219)
T d2avda1         136 FDVAVVD  142 (219)
T ss_dssp             EEEEEEC
T ss_pred             ccEEEEe
Confidence            9999875

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=92.21  E-value=0.11  Score=43.17  Aligned_cols=67  Identities=18%  Similarity=0.138  Sum_probs=40.9

Q ss_pred             CeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHH----cCCC---eEEee---ccccCCCCCCCcccceEe
Q 019228          255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP---AMIGS---FASKQLPYPSLSFDMLHC  323 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~e----RGvp---a~~~~---lda~rLPFpD~SFDlVhc  323 (344)
                      .++||+-||||++|...+.+|+.  .+...|.+...++..++    -++.   ..+..   ++....+.....||+|++
T Consensus        45 ~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          45 SECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             ceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            47999999999999999999864  23335555554433322    2321   22221   122344555667999987

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.97  E-value=0.12  Score=46.43  Aligned_cols=54  Identities=20%  Similarity=0.240  Sum_probs=35.9

Q ss_pred             hhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHH
Q 019228          231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL  295 (344)
Q Consensus       231 ~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~  295 (344)
                      ...++.|.+.+....        ..+||+||+|+|.++..|++++...+   ..+.++.+++.-.
T Consensus         7 ~~i~~kIv~~~~~~~--------~d~VlEIGPG~G~LT~~Ll~~~~~v~---aiE~D~~l~~~L~   60 (278)
T d1zq9a1           7 PLIINSIIDKAALRP--------TDVVLEVGPGTGNMTVKLLEKAKKVV---ACELDPRLVAELH   60 (278)
T ss_dssp             HHHHHHHHHHTCCCT--------TCEEEEECCTTSTTHHHHHHHSSEEE---EEESCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCC--------CCEEEEECCCchHHHHHHHhcCCcEE---EEEEccchhHHHH
Confidence            345777777776533        25899999999999999998753222   2344555554443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.37  E-value=0.076  Score=47.35  Aligned_cols=70  Identities=13%  Similarity=0.111  Sum_probs=45.5

Q ss_pred             CCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHc---------------CCCeEEeeccccCCCCCCCc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------------GLPAMIGSFASKQLPYPSLS  317 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eR---------------Gvpa~~~~lda~rLPFpD~S  317 (344)
                      ..++||-+|+|.|..+..++.....  .+...++++..++.|++-               ...+.+...|+...--.++.
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~--~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVD--EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCS--EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCceEEEecCCchHHHHHHHHhCCc--eEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            4679999999999998888877543  345568888888888642               11122222233221113678


Q ss_pred             ccceEec
Q 019228          318 FDMLHCA  324 (344)
Q Consensus       318 FDlVhcs  324 (344)
                      ||+|++-
T Consensus       150 yDvIi~D  156 (276)
T d1mjfa_         150 FDVIIAD  156 (276)
T ss_dssp             EEEEEEE
T ss_pred             CCEEEEe
Confidence            9999974

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=90.75  E-value=0.17  Score=43.60  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=39.7

Q ss_pred             CeEEEECCccchhhHHHhh--CCceEEEcccccccHHHHHH----HHHcCCC-eEEeeccccCCCCCCCcccceEeccc
Q 019228          255 RTILDIGCGYGSFGAHLFS--KELLTMCIANYEASGSQVQL----TLERGLP-AMIGSFASKQLPYPSLSFDMLHCARC  326 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Lae--r~V~~~sIa~~D~sea~Iq~----A~eRGvp-a~~~~lda~rLPFpD~SFDlVhcs~~  326 (344)
                      .++||||+|.|.-|..|+=  .+.   .+...|.....+.|    +.+-++. +.+-.-.++.+. ++.+||+|+|.++
T Consensus        67 ~~ilDiGsGaG~PGi~laI~~p~~---~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~  141 (207)
T d1jsxa_          67 ERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF  141 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS
T ss_pred             CceeeeeccCCceeeehhhhcccc---eEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhh
Confidence            4799999999988876653  232   23334555444433    3334654 322222344543 4678999998654

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=90.59  E-value=0.32  Score=45.00  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=28.0

Q ss_pred             CCccccchhhHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhh
Q 019228          223 ASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS  273 (344)
Q Consensus       223 ggt~F~g~~~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Lae  273 (344)
                      +|.+|+- ...++.+.+++....        ..+|||-.||+|.|.....+
T Consensus       141 ~G~f~TP-~~Iv~~mv~ll~~~~--------~~~IlDPacGsG~fL~~a~~  182 (425)
T d2okca1         141 AGQYFTP-RPLIQAMVDCINPQM--------GETVCDPACGTGGFLLTAYD  182 (425)
T ss_dssp             CGGGCCC-HHHHHHHHHHHCCCT--------TCCEEETTCTTCHHHHHHHH
T ss_pred             chhhccc-hhhhHhhheeccCcc--------cceeeccccccCccHHHHHH
Confidence            4666632 234667777776432        25799999999999765433

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=90.05  E-value=0.087  Score=47.92  Aligned_cols=77  Identities=13%  Similarity=0.142  Sum_probs=48.4

Q ss_pred             CCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc------C------CCeEEeeccccCCCCCCCccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER------G------LPAMIGSFASKQLPYPSLSFD  319 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR------G------vpa~~~~lda~rLPFpD~SFD  319 (344)
                      ..++||.||.|.|..+..++.. .+.  .+...+++++.++.|++.      +      +.+.++++ .+-|.-.++.||
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~--~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da-~~~l~~~~~~yD  153 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVE--KAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA-RAYLERTEERYD  153 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCC--EEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH-HHHHHHCCCCEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcc--eEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchH-HHHhhhcCCccc
Confidence            4679999999999999888765 232  445567778888877653      1      22344442 111223467899


Q ss_pred             ceEecccccccCcc
Q 019228          320 MLHCARCGVDWDQK  333 (344)
Q Consensus       320 lVhcs~~Li~W~~~  333 (344)
                      +|++- +..+|...
T Consensus       154 vIi~D-~~dp~~~~  166 (312)
T d1uira_         154 VVIID-LTDPVGED  166 (312)
T ss_dssp             EEEEE-CCCCBSTT
T ss_pred             EEEEe-CCCccccc
Confidence            99964 33345443

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=89.35  E-value=0.053  Score=48.93  Aligned_cols=20  Identities=25%  Similarity=0.544  Sum_probs=18.1

Q ss_pred             CeEEEECCccchhhHHHhhC
Q 019228          255 RTILDIGCGYGSFGAHLFSK  274 (344)
Q Consensus       255 r~VLDVGCGtGsfaa~Laer  274 (344)
                      ..|+|+|||.|.++.+++++
T Consensus        68 ~~vvDlG~~pGgws~~~a~~   87 (257)
T d2p41a1          68 GKVVDLGCGRGGWSYYCGGL   87 (257)
T ss_dssp             EEEEEETCTTSHHHHHHHTS
T ss_pred             CeEEEecCCCChHHHHHHhh
Confidence            37999999999999999876

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=87.88  E-value=0.49  Score=44.00  Aligned_cols=22  Identities=18%  Similarity=0.505  Sum_probs=19.5

Q ss_pred             CCCCCCCcccceEecccccccCcc
Q 019228          310 QLPYPSLSFDMLHCARCGVDWDQK  333 (344)
Q Consensus       310 rLPFpD~SFDlVhcs~~Li~W~~~  333 (344)
                      || ||++|.|++||+.++ ||...
T Consensus       133 rL-fP~~Slh~~~Ss~al-HWLS~  154 (359)
T d1m6ex_         133 RL-FPRNTLHFIHSSYSL-MWLSQ  154 (359)
T ss_dssp             CC-SCTTCBSCEEEESCT-TBCSS
T ss_pred             hc-CCCCceEEeeehhhh-hhhhc
Confidence            45 999999999999988 99875

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=86.06  E-value=0.24  Score=42.91  Aligned_cols=31  Identities=13%  Similarity=0.168  Sum_probs=23.3

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhh
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS  273 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Lae  273 (344)
                      .++..+.++..           .++||.||+++|.-+.+|++
T Consensus        49 ~~L~~L~~~~~-----------~k~iLEiGT~~GyStl~la~   79 (227)
T d1susa1          49 QFLSMLLKLIN-----------AKNTMEIGVYTGYSLLATAL   79 (227)
T ss_dssp             HHHHHHHHHHT-----------CCEEEEECCGGGHHHHHHHH
T ss_pred             HHHHHHHHhcC-----------CCcEEEecchhhhhHHHHHh
Confidence            45555655543           47899999999988888875

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.04  E-value=0.43  Score=43.05  Aligned_cols=69  Identities=14%  Similarity=0.121  Sum_probs=44.9

Q ss_pred             CCCeEEEECCccchhhHHHhhCC-ceEEEcccccccHHHHHHHHHcC-----------CCeEEeeccccCCCCCCCcccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLERG-----------LPAMIGSFASKQLPYPSLSFDM  320 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer~-V~~~sIa~~D~sea~Iq~A~eRG-----------vpa~~~~lda~rLPFpD~SFDl  320 (344)
                      ..++||=||.|.|..+..+++.. +.  .+...+++++.++.|++.-           +.+.++++ .+-|--.++.||+
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~--~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da-~~~l~~~~~~yDv  165 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVE--KAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG-AEYVRKFKNEFDV  165 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCS--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH-HHHGGGCSSCEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCc--eEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhH-HHHHhcCCCCCCE
Confidence            46899999999999998888763 32  3445677777777776531           22334432 1112234578999


Q ss_pred             eEec
Q 019228          321 LHCA  324 (344)
Q Consensus       321 Vhcs  324 (344)
                      |++-
T Consensus       166 Ii~D  169 (295)
T d1inla_         166 IIID  169 (295)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9974

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.41  E-value=0.94  Score=37.78  Aligned_cols=80  Identities=11%  Similarity=0.160  Sum_probs=50.2

Q ss_pred             HHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhCCceEEEcccccccHHHHHHHHHcC---CCeEEeeccc--
Q 019228          234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFAS--  308 (344)
Q Consensus       234 Id~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer~V~~~sIa~~D~sea~Iq~A~eRG---vpa~~~~lda--  308 (344)
                      ++++.+.+....+        .+++|..||.|..+..+++++.   .+.+.|..+.++..|.++.   +.++.+.++.  
T Consensus         7 l~Evl~~l~~~~g--------~~~vD~T~G~GGhs~~iL~~~~---~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~   75 (182)
T d1wg8a2           7 YQEALDLLAVRPG--------GVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLK   75 (182)
T ss_dssp             HHHHHHHHTCCTT--------CEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHH
T ss_pred             HHHHHHhcCCCCC--------CEEEEeCCCCcHHHHHHhcccC---cEEEEhhhhhHHHHHhhccccceeEeehHHHHHH
Confidence            4556666654443        5899999999999999999864   3445677788888887653   2233332210  


Q ss_pred             cCC-CCCCCcccceEec
Q 019228          309 KQL-PYPSLSFDMLHCA  324 (344)
Q Consensus       309 ~rL-PFpD~SFDlVhcs  324 (344)
                      +.+ .+..+.+|.|+.-
T Consensus        76 ~~l~~~~~~~vdgIl~D   92 (182)
T d1wg8a2          76 RHLAALGVERVDGILAD   92 (182)
T ss_dssp             HHHHHTTCSCEEEEEEE
T ss_pred             HHHHHcCCCccCEEEEE
Confidence            111 2344678877763

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.25  E-value=0.67  Score=41.37  Aligned_cols=85  Identities=15%  Similarity=0.172  Sum_probs=52.5

Q ss_pred             hHHHHHHHHhccccCcccccCCCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc-----------CC
Q 019228          232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER-----------GL  299 (344)
Q Consensus       232 ~yId~I~e~Lpl~~g~~w~~~~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR-----------Gv  299 (344)
                      ..+....-++++-..     ...++||=||-|.|..+..+++. ++.  .+...++.++.++.|++.           .+
T Consensus        62 ~~Yhe~l~h~~l~~~-----~~pk~vLiiGgG~G~~~~~~l~~~~~~--~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv  134 (285)
T d2o07a1          62 FSYQEMIANLPLCSH-----PNPRKVLIIGGGDGGVLREVVKHPSVE--SVVQCEIDEDVIQVSKKFLPGMAIGYSSSKL  134 (285)
T ss_dssp             HHHHHHHHHHHHTTS-----SSCCEEEEEECTTSHHHHHHTTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTE
T ss_pred             HHHHHHhccHhhhhC-----cCcCeEEEeCCCchHHHHHHHHcCCcc--eeeeccCCHHHHHHHHhhchhhccccCCCCc
Confidence            445555555553221     34679999999999999998886 343  444567778888887653           12


Q ss_pred             CeEEeeccccCCCCCCCcccceEec
Q 019228          300 PAMIGSFASKQLPYPSLSFDMLHCA  324 (344)
Q Consensus       300 pa~~~~lda~rLPFpD~SFDlVhcs  324 (344)
                      .+.++++ .+-|--..+.||+|++-
T Consensus       135 ~i~~~Da-~~~l~~~~~~yDvIi~D  158 (285)
T d2o07a1         135 TLHVGDG-FEFMKQNQDAFDVIITD  158 (285)
T ss_dssp             EEEESCH-HHHHHTCSSCEEEEEEE
T ss_pred             eEEEccH-HHHHhcCCCCCCEEEEc
Confidence            2334432 11122245689999985

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=80.03  E-value=0.82  Score=40.43  Aligned_cols=68  Identities=10%  Similarity=0.223  Sum_probs=44.7

Q ss_pred             CCCeEEEECCccchhhHHHhhC-CceEEEcccccccHHHHHHHHHc-----C------CCeEEeecccc-CCCCCCCccc
Q 019228          253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER-----G------LPAMIGSFASK-QLPYPSLSFD  319 (344)
Q Consensus       253 ~ir~VLDVGCGtGsfaa~Laer-~V~~~sIa~~D~sea~Iq~A~eR-----G------vpa~~~~lda~-rLPFpD~SFD  319 (344)
                      ..++||-||-|.|..+..++++ ++.  .+...++.++.++.|++-     +      +.+..++  +. -|--.++.||
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~--~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D--~~~~l~~~~~~yD  150 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVK--KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD--GFMHIAKSENQYD  150 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCS--EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC--SHHHHHTCCSCEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcc--eEEEecCCHHHHHHHHHhChhhcccccCCCeEEEech--HHHHHhhcCCCCC
Confidence            4679999999999999998875 443  344467777777777653     1      1223333  22 1223467899


Q ss_pred             ceEec
Q 019228          320 MLHCA  324 (344)
Q Consensus       320 lVhcs  324 (344)
                      +|+.-
T Consensus       151 vIi~D  155 (274)
T d1iy9a_         151 VIMVD  155 (274)
T ss_dssp             EEEES
T ss_pred             EEEEc
Confidence            99875