Citrus Sinensis ID: 019234
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 344 | ||||||
| 297735048 | 389 | unnamed protein product [Vitis vinifera] | 0.997 | 0.881 | 0.862 | 1e-179 | |
| 359476646 | 402 | PREDICTED: UPF0183 protein At3g51130-lik | 0.997 | 0.853 | 0.862 | 1e-179 | |
| 356538264 | 403 | PREDICTED: UPF0183 protein At3g51130-lik | 0.997 | 0.851 | 0.828 | 1e-173 | |
| 449434186 | 398 | PREDICTED: UPF0183 protein At3g51130-lik | 0.985 | 0.851 | 0.833 | 1e-172 | |
| 224134150 | 401 | predicted protein [Populus trichocarpa] | 0.968 | 0.830 | 0.845 | 1e-172 | |
| 449491389 | 398 | PREDICTED: UPF0183 protein At3g51130-lik | 0.985 | 0.851 | 0.833 | 1e-172 | |
| 357483667 | 404 | hypothetical protein MTR_5g021520 [Medic | 0.997 | 0.849 | 0.826 | 1e-171 | |
| 224094913 | 398 | predicted protein [Populus trichocarpa] | 0.962 | 0.831 | 0.836 | 1e-171 | |
| 356496677 | 400 | PREDICTED: UPF0183 protein At3g51130-lik | 0.988 | 0.85 | 0.828 | 1e-171 | |
| 388499418 | 404 | unknown [Medicago truncatula] | 0.997 | 0.849 | 0.817 | 1e-169 |
| >gi|297735048|emb|CBI17410.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/343 (86%), Positives = 316/343 (92%)
Query: 2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
+EPLKLDI+ISFPDHGFHLRFDPWSQRLRLIEIFD+KRLQMRYATSLIGG STLATFVAV
Sbjct: 47 EEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDVKRLQMRYATSLIGGPSTLATFVAV 106
Query: 62 YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTC 121
YALFGPTFPG YDK+R VY LFYPGLSFAFPIP QY DCC D EAELPLEFPDGTTPVTC
Sbjct: 107 YALFGPTFPGSYDKDRGVYTLFYPGLSFAFPIPTQYTDCCHDGEAELPLEFPDGTTPVTC 166
Query: 122 RVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASP 181
RVSIYD S D KVGVGS +KA AP LP GSLY+EEVH KLGEEL FTVG QHIPFGASP
Sbjct: 167 RVSIYDSSTDSKVGVGSSMEKASAPPLPAGSLYMEEVHVKLGEELRFTVGGQHIPFGASP 226
Query: 182 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIK 241
QDVWTELGRPCGIHQKQVDQMVIHSASDPRPR+TLCGDYFYNY+ RGLDILFDGQTHKIK
Sbjct: 227 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRTTLCGDYFYNYFDRGLDILFDGQTHKIK 286
Query: 242 KFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDCG 301
KF++HTNYPGHADFNSY+KCNF+I GSDF G+ EV K++ITP+TKWEQVKEILGDCG
Sbjct: 287 KFVLHTNYPGHADFNSYMKCNFVIYGSDFGGSFQEVKMSKHRITPSTKWEQVKEILGDCG 346
Query: 302 RAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 344
RAAIQTQGST+NPFGSTFVYGYQN+AFEVMKNGYI+TVT+FQS
Sbjct: 347 RAAIQTQGSTNNPFGSTFVYGYQNVAFEVMKNGYIATVTLFQS 389
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476646|ref|XP_003631875.1| PREDICTED: UPF0183 protein At3g51130-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356538264|ref|XP_003537624.1| PREDICTED: UPF0183 protein At3g51130-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449434186|ref|XP_004134877.1| PREDICTED: UPF0183 protein At3g51130-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224134150|ref|XP_002327768.1| predicted protein [Populus trichocarpa] gi|222836853|gb|EEE75246.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449491389|ref|XP_004158881.1| PREDICTED: UPF0183 protein At3g51130-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357483667|ref|XP_003612120.1| hypothetical protein MTR_5g021520 [Medicago truncatula] gi|355513455|gb|AES95078.1| hypothetical protein MTR_5g021520 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|224094913|ref|XP_002310289.1| predicted protein [Populus trichocarpa] gi|222853192|gb|EEE90739.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356496677|ref|XP_003517192.1| PREDICTED: UPF0183 protein At3g51130-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|388499418|gb|AFK37775.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 344 | ||||||
| TAIR|locus:2080873 | 410 | AT3G51130 [Arabidopsis thalian | 0.985 | 0.826 | 0.802 | 6.8e-159 | |
| DICTYBASE|DDB_G0271880 | 519 | DDB_G0271880 "UPF0183 family p | 0.598 | 0.396 | 0.386 | 3.7e-54 | |
| FB|FBgn0035877 | 438 | CG7083 [Drosophila melanogaste | 0.979 | 0.769 | 0.371 | 5.6e-52 | |
| RGD|621098 | 422 | RGD621098 "similar to RIKEN cD | 0.465 | 0.379 | 0.439 | 1.4e-50 | |
| UNIPROTKB|Q9BSU1 | 422 | C16orf70 "UPF0183 protein C16o | 0.494 | 0.402 | 0.423 | 6e-50 | |
| MGI|MGI:2443049 | 422 | D230025D16Rik "RIKEN cDNA D230 | 0.465 | 0.379 | 0.439 | 2e-49 | |
| WB|WBGene00011344 | 422 | T01G9.2a [Caenorhabditis elega | 0.456 | 0.372 | 0.352 | 1.7e-37 | |
| UNIPROTKB|P34692 | 422 | T01G9.2 "UPF0183 protein T01G9 | 0.456 | 0.372 | 0.352 | 1.7e-37 | |
| UNIPROTKB|G4MWK3 | 526 | MGG_01174 "Uncharacterized pro | 0.404 | 0.264 | 0.285 | 1.3e-16 | |
| ASPGD|ASPL0000038147 | 516 | AN10404 [Emericella nidulans ( | 0.264 | 0.176 | 0.336 | 1.8e-13 |
| TAIR|locus:2080873 AT3G51130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
Identities = 276/344 (80%), Positives = 312/344 (90%)
Query: 2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
++PLKLD++ISFPDHGFHLRFDPWSQRLRL+EIFD+KRLQMRYATS+IGG STLATFVAV
Sbjct: 71 EDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAV 130
Query: 62 YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTC 121
YALFGPTFPG+YDKER +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTC
Sbjct: 131 YALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTC 190
Query: 122 RVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASP 181
RVSIYD S+DKKVGVG L D+A P LP GSLY+EEVH K G+EL+FTVG QH+PFGASP
Sbjct: 191 RVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVKPGKELYFTVGGQHMPFGASP 250
Query: 182 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIK 241
QDVWTELGRPCGIH KQVDQMVIHSASDPRP++T+CGDYFYNY+TRGLDILFDG+THK+K
Sbjct: 251 QDVWTELGRPCGIHPKQVDQMVIHSASDPRPKTTICGDYFYNYFTRGLDILFDGETHKVK 310
Query: 242 KFIMHTNYPGHADFNSYIKCNFII-LGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDC 300
KF++HTNYPGHADFNSYIKCNF+I G+D +AE + NKITP+T W+QVKEILG+C
Sbjct: 311 KFVLHTNYPGHADFNSYIKCNFVISAGAD----AAEANRSGNKITPSTNWDQVKEILGEC 366
Query: 301 GRAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 344
G AAIQTQGSTSNPFGST+VYGYQN+AFEVMKNG+I+T+T+FQS
Sbjct: 367 GPAAIQTQGSTSNPFGSTYVYGYQNVAFEVMKNGHIATITLFQS 410
|
|
| DICTYBASE|DDB_G0271880 DDB_G0271880 "UPF0183 family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0035877 CG7083 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| RGD|621098 RGD621098 "similar to RIKEN cDNA D230025D16Rik" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9BSU1 C16orf70 "UPF0183 protein C16orf70" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2443049 D230025D16Rik "RIKEN cDNA D230025D16 gene" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00011344 T01G9.2a [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P34692 T01G9.2 "UPF0183 protein T01G9.2" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G4MWK3 MGG_01174 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000038147 AN10404 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 344 | |||
| pfam03676 | 395 | pfam03676, UPF0183, Uncharacterized protein family | 1e-171 |
| >gnl|CDD|217668 pfam03676, UPF0183, Uncharacterized protein family (UPF0183) | Back alignment and domain information |
|---|
Score = 481 bits (1239), Expect = e-171
Identities = 167/371 (45%), Positives = 225/371 (60%), Gaps = 41/371 (11%)
Query: 2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
++PL +D++I+ P G LRFDP SQRL+LIE+FD+KR++++YA S L T V
Sbjct: 37 KDPLSMDLVINLPQDGIRLRFDPVSQRLKLIEVFDLKRVKLKYAGVYFNSPSVLPTIEQV 96
Query: 62 YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTC 121
Y FG T PGVYD +Y LF+ GLSF+FPI ++Y L +FPDG TPV
Sbjct: 97 YHSFGATHPGVYDASHQLYALFFRGLSFSFPIDSKYTPGFGHGLGSL--KFPDGATPVVS 154
Query: 122 RVSIYDGSADKKVGVGSLFDKAIAPSLPV----GSLYIEEVHA------KLGEELHFTVG 171
R+SIYDGS +A P LP+ G+LY+E V LG +L
Sbjct: 155 RMSIYDGSN---------LAEAKVPPLPLSCYLGNLYLESVEVLRDSGGTLGLKLQLVTE 205
Query: 172 --------------SQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLC 217
++HI FG S QDV + LG PC + K D+M IHS SD R + C
Sbjct: 206 GGPGVALEPRVRTFTRHIYFGDSCQDVLSALGSPCKVFYKSEDKMKIHSPSDHRLVQSKC 265
Query: 218 GDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFII-LGSDFAGTSAE 276
DYF+NY+T GLDILFD QTH++KKF++HTN+PGH +FN Y +CNF+I L +D GT +
Sbjct: 266 SDYFFNYFTLGLDILFDAQTHRVKKFVLHTNFPGHYNFNMYHRCNFVIQLPADKDGTDS- 324
Query: 277 VHSYKNKITPNTKWEQVKEILGDCG-RAAIQTQGSTS--NPFGSTFVYGYQNIAFEVMKN 333
+ ITP +KW+QV EILG+ G R + + S++ NPFGSTF YGYQ+I FEVM N
Sbjct: 325 -PTDSPPITPYSKWDQVSEILGNSGERPVVLHRASSTNTNPFGSTFCYGYQDIIFEVMPN 383
Query: 334 GYISTVTMFQS 344
+I++VT++ +
Sbjct: 384 NHIASVTLYGA 394
|
This family of proteins includes Lin-10 from C. elegans. Length = 395 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 344 | |||
| PF03676 | 394 | UPF0183: Uncharacterised protein family (UPF0183); | 100.0 | |
| KOG2819 | 413 | consensus Uncharacterized conserved protein [Funct | 100.0 |
| >PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-118 Score=884.38 Aligned_cols=331 Identities=49% Similarity=0.892 Sum_probs=302.4
Q ss_pred CCCCccceEEEcCCCCeEEEecCCCCeEEEEEEeeCCCceEEEcceeccCCCCcceeeeeecccCCCCCCcccCCCceEE
Q 019234 2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYM 81 (344)
Q Consensus 2 ~~Pl~~~ivi~lp~~GirL~Fd~~~QRL~lIEv~d~~~~~L~Y~~~~~~~p~~~~tf~~Iy~~FGPTyPG~y~~~~~~Y~ 81 (344)
++|++.||||+||++||||+|||++||||||||+||++++|+|++++|++|++.|||++||++|||||||+||+++++|+
T Consensus 37 ~~P~~~~ivi~l~~~GirL~Fd~~~QrL~lIEv~d~~~i~L~Y~~~~~~~p~~~pTf~~Iy~~FGPTyPG~yd~~~~~Yv 116 (394)
T PF03676_consen 37 QDPLSSDIVINLPENGIRLRFDGPSQRLRLIEVYDFSKIKLRYKGSVFSSPEIGPTFRHIYRLFGPTYPGEYDKSRGTYV 116 (394)
T ss_pred CCCCcCCEEEEcCCCCeEEEECCCCcEEEEEEEecCccceEEeCcccccCcccCcchheeheccCCCCCCccCCCCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecceEEEEeCCccccccccccCCCccccCCCCCCcceeEEEEEeCCCCcccccCCccccccCCCCCC----CCeeEEE
Q 019234 82 LFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPV----GSLYIEE 157 (344)
Q Consensus 82 LsYpGvaF~Fpi~~~~~~~~~~~~~~l~l~~~~~~~~~~~~m~I~~~~~~~~~~~G~s~~e~~~p~l~~----g~~~~e~ 157 (344)
||||||||+||+++++++.+.++.+ +|+++++++|+|+||+|| +|++|+|+++|++|. |++|+++
T Consensus 117 LsYpGlaF~Fpi~~~~~~~~~~~~~--sl~~~~~ssp~~tsmaIf---------~G~s~~ear~p~lp~~~~~~~~~~~~ 185 (394)
T PF03676_consen 117 LSYPGLAFSFPIPSKFQSSYSDGLD--SLEFPSGSSPVATSMAIF---------SGSSWAEARAPPLPLSCYCGNLYLES 185 (394)
T ss_pred EEECCEEEEeeCchhhcccccCCcc--eeecCCCCCcceeEEEEE---------cCCchhcccCCCccccccCCCcceee
Confidence 9999999999999988888888753 889999999999999999 999999999998864 8899999
Q ss_pred EEEEcCC------cEEEEec--------------eeEEEcCCCHHHHHHhcCCCCccccccCCceeeecCCCCCCCCCcC
Q 019234 158 VHAKLGE------ELHFTVG--------------SQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLC 217 (344)
Q Consensus 158 v~v~~~~------~l~f~~~--------------~~~I~fG~T~QDVl~eLG~P~~if~K~ddrM~IH~~~~~~~~~~~~ 217 (344)
|+|...+ .|.|... +++|+||+|||||++|||||++||||+||||+||++++++...+..
T Consensus 186 v~v~~~~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~qdv~~~lG~P~~~~~k~~d~m~ih~~~~~~~~~~~~ 265 (394)
T PF03676_consen 186 VEVLRDNKETVGLELSLVTEGGPGRIEEPRRSNFERWIRFGDTPQDVLSELGPPDRIFYKSDDRMSIHSPSSHKQVPSKP 265 (394)
T ss_pred EEeeccCCCCcCcEEEEEEcCCCcccccccccCceEEEEeCCCHHHHHHhhCCccceeecccccccccccccccCCccCC
Confidence 9985433 3444332 3699999999999999999999999999999999998888888889
Q ss_pred CcceeeecccceeEEEeCCcceEEEEEeeeCCCCCcCcCceeeeeeEEeccCCCCCCccccCcccccCCCCChhHHHhhh
Q 019234 218 GDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEIL 297 (344)
Q Consensus 218 ~dyFyNYF~lGlDiL~d~~th~v~K~ILHtN~PG~y~Fn~Y~RC~f~I~~~~~~~~~~~~~~~~~~it~~~~~~~i~~~l 297 (344)
+|||||||+||||||||++||+|||||||||+||||+||+|+||||+|....++..+ +.......|+++++|++|++.|
T Consensus 266 ~~yf~nYf~~G~Dilfd~~~~~v~K~ILHtN~PG~~~Fn~y~rC~f~I~~~~~~~~~-~~~~~~~~i~~~~kwd~i~~~L 344 (394)
T PF03676_consen 266 SDYFYNYFTLGLDILFDGNTHRVKKFILHTNIPGHYDFNRYNRCNFEIELSNDSNET-DSPTNSPMITPYTKWDDIQEIL 344 (394)
T ss_pred CCEEEeccccceEEEEeCCCceEEEEEEecCCCCCccccceeeeeeEEEecCccccc-ccccccceeeccCCHhHhHHhh
Confidence 999999999999999999999999999999999999999999999999997644322 2222233599999999999999
Q ss_pred CCCC-CceEecCCCCC--CCCcceEEeeeCCeEEEEecCCceEEEEEeeC
Q 019234 298 GDCG-RAAIQTQGSTS--NPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 344 (344)
Q Consensus 298 ~~~~-rpvvlnR~~~~--npfGsT~lyG~~~iifEVm~N~~IasvTlf~~ 344 (344)
.... |||||+|++++ ||||+|+||||+|||||||+||+|||||||+.
T Consensus 345 ~~~~~~pvvl~r~s~~n~npfGsT~~yG~~~~IfEVm~n~~IasVTly~~ 394 (394)
T PF03676_consen 345 GKAEDRPVVLNRASSSNDNPFGSTFLYGYQGIIFEVMKNGHIASVTLYQA 394 (394)
T ss_pred cccccCCcccccccccCCCCCcceeEeCCCCEEEEEecCCcEEEEEEecC
Confidence 7655 99999999886 99999999999999999999999999999973
|
|
| >KOG2819 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 344 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 7e-07
Identities = 67/384 (17%), Positives = 108/384 (28%), Gaps = 122/384 (31%)
Query: 1 MQEPLKLDIIISF---PDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLI-------- 49
M + L I ++ DH +++ S + L + Y L+
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL----KSKPYENCLLVLLNVQNA 256
Query: 50 -------GGSSTLAT--FVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADC 100
L T F V + M P + + +Y DC
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKS--LLLKYLDC 313
Query: 101 CQDREAELPLEFPDGTTPVTCRV---SIYDGSA----------DK-----KVGVGSL--- 139
R +LP E P + SI DG A DK + + L
Sbjct: 314 ---RPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 140 -----FDK-AIAPS---LPVGSLYI------EEVHAKLGEELH-----------FTVGSQ 173
FD+ ++ P +P L + + + +LH T+
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--- 426
Query: 174 HIPFGASPQDVWTELGRPC----GIHQKQVDQMVIHSASDPRPRSTLCGD-YFYNYYTRG 228
IP ++ EL +H+ VD I D D YFY++
Sbjct: 427 SIP------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 229 LDILFDGQTHKIKKF-------------IMHTNYPGHADFNSYIKCNFIILGSDFAGTSA 275
L + ++ F I H + +A T
Sbjct: 481 LKNI--EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-------------GSILNTLQ 525
Query: 276 EVHSYKNKITPN-TKWEQ-VKEIL 297
++ YK I N K+E+ V IL
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAIL 549
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00