Citrus Sinensis ID: 019234


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
MQEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDCGRAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS
ccccccccEEEEcccccEEEEEcccccEEEEEEEEEcccEEEEEccccccccccccHHEEEHHHccccccccccccccEEEEEEccEEEEEEcccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccEEEEEEEccccEEEEEEccEEEEccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEcccccccccccEEEEEEEEEccccccccccccccccEEcccccHHHHHHHHccccccccccccccccccccEEEEEEcccEEEEEEcccEEEEEEEEc
ccccccccEEEEcccccEEEEEcccccEEEEEEEEEccEEEEEEccEEcccccccccHHHHHHHccccccccccccccEEEEEcccEEEEEccccHcccccccccccccccccccccccEEEEEEEcccccccccccccHHHccccccccccEEEEEcccccccEEEEEEccEEEEccccHHHHHHHHcccccEEEcccccEEEEccccccccccccccHEEHHHcccEEEEEEccccEEEEEEEEcccccccccccEEccEEEEEEcccccccccccccccEEcccccHHHHHHHHcccccccEEEcccccccccccEEEccccEEEEEEccccEEEEEEEcc
mqeplkldiiisfpdhgfhlrfdpwsqRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALfgptfpgvydkerSVYMLfypglsfafpipaqyadccqdreaelplefpdgttpvtcrvsiydgsadkkvgvgslfdkaiapslpvgslYIEEVHAKLGEelhftvgsqhipfgaspqdvwtelgrpcgihqkqvDQMVIhsasdprprstlcgdyfynyytrgldilfdgQTHKIKKFImhtnypghadfnsyiKCNFIIlgsdfagtsaevhsyknkitpntkWEQVKEILGDCGRAaiqtqgstsnpfgstfvYGYQNIAFEVMKNGYISTVTMFQS
MQEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELplefpdgttpVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHsasdprprstLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYknkitpntkWEQVKEILGDCGRAAIQtqgstsnpfgSTFVYGYQNIAFEVMKNGYISTVTMFQS
MQEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDCGRAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS
*****KLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIH********STLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDCGRAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTM***
**EPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQY**********************TC*VSIYDGSADKKV*VGSLF*KAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQM*****************YFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILG************************************************GSTFVYGYQNIAFEVMKNGYISTVTMFQS
MQEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDCGRAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS
**EPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRP**TLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDF*********YKNKITPNTKWEQVKEILGDCGRAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS
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MQEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDCGRAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query344 2.2.26 [Sep-21-2011]
Q9SD33410 UPF0183 protein At3g51130 yes no 0.985 0.826 0.802 1e-170
Q9VSH9438 UPF0183 protein CG7083 OS yes no 0.947 0.744 0.363 8e-56
O08654422 UPF0183 protein C16orf70 yes no 0.915 0.746 0.337 7e-50
Q9BSU1422 UPF0183 protein C16orf70 yes no 0.924 0.753 0.332 3e-49
Q922R1422 UPF0183 protein C16orf70 yes no 0.941 0.767 0.337 7e-49
P34692422 UPF0183 protein T01G9.2 O yes no 0.947 0.772 0.293 1e-34
>sp|Q9SD33|U183_ARATH UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2 SV=2 Back     alignment and function desciption
 Score =  598 bits (1543), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 276/344 (80%), Positives = 312/344 (90%), Gaps = 5/344 (1%)

Query: 2   QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
           ++PLKLD++ISFPDHGFHLRFDPWSQRLRL+EIFD+KRLQMRYATS+IGG STLATFVAV
Sbjct: 71  EDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAV 130

Query: 62  YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTC 121
           YALFGPTFPG+YDKER +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTC
Sbjct: 131 YALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTC 190

Query: 122 RVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASP 181
           RVSIYD S+DKKVGVG L D+A  P LP GSLY+EEVH K G+EL+FTVG QH+PFGASP
Sbjct: 191 RVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVKPGKELYFTVGGQHMPFGASP 250

Query: 182 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIK 241
           QDVWTELGRPCGIH KQVDQMVIHSASDPRP++T+CGDYFYNY+TRGLDILFDG+THK+K
Sbjct: 251 QDVWTELGRPCGIHPKQVDQMVIHSASDPRPKTTICGDYFYNYFTRGLDILFDGETHKVK 310

Query: 242 KFIMHTNYPGHADFNSYIKCNFII-LGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDC 300
           KF++HTNYPGHADFNSYIKCNF+I  G+D    +AE +   NKITP+T W+QVKEILG+C
Sbjct: 311 KFVLHTNYPGHADFNSYIKCNFVISAGAD----AAEANRSGNKITPSTNWDQVKEILGEC 366

Query: 301 GRAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 344
           G AAIQTQGSTSNPFGST+VYGYQN+AFEVMKNG+I+T+T+FQS
Sbjct: 367 GPAAIQTQGSTSNPFGSTYVYGYQNVAFEVMKNGHIATITLFQS 410





Arabidopsis thaliana (taxid: 3702)
>sp|Q9VSH9|U183_DROME UPF0183 protein CG7083 OS=Drosophila melanogaster GN=CG7083 PE=2 SV=1 Back     alignment and function description
>sp|O08654|CP070_RAT UPF0183 protein C16orf70 homolog OS=Rattus norvegicus PE=2 SV=1 Back     alignment and function description
>sp|Q9BSU1|CP070_HUMAN UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf70 PE=1 SV=1 Back     alignment and function description
>sp|Q922R1|CP070_MOUSE UPF0183 protein C16orf70 homolog OS=Mus musculus PE=2 SV=2 Back     alignment and function description
>sp|P34692|U183_CAEEL UPF0183 protein T01G9.2 OS=Caenorhabditis elegans GN=T01G9.2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
297735048389 unnamed protein product [Vitis vinifera] 0.997 0.881 0.862 1e-179
359476646402 PREDICTED: UPF0183 protein At3g51130-lik 0.997 0.853 0.862 1e-179
356538264403 PREDICTED: UPF0183 protein At3g51130-lik 0.997 0.851 0.828 1e-173
449434186398 PREDICTED: UPF0183 protein At3g51130-lik 0.985 0.851 0.833 1e-172
224134150401 predicted protein [Populus trichocarpa] 0.968 0.830 0.845 1e-172
449491389398 PREDICTED: UPF0183 protein At3g51130-lik 0.985 0.851 0.833 1e-172
357483667404 hypothetical protein MTR_5g021520 [Medic 0.997 0.849 0.826 1e-171
224094913398 predicted protein [Populus trichocarpa] 0.962 0.831 0.836 1e-171
356496677400 PREDICTED: UPF0183 protein At3g51130-lik 0.988 0.85 0.828 1e-171
388499418404 unknown [Medicago truncatula] 0.997 0.849 0.817 1e-169
>gi|297735048|emb|CBI17410.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 296/343 (86%), Positives = 316/343 (92%)

Query: 2   QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
           +EPLKLDI+ISFPDHGFHLRFDPWSQRLRLIEIFD+KRLQMRYATSLIGG STLATFVAV
Sbjct: 47  EEPLKLDIVISFPDHGFHLRFDPWSQRLRLIEIFDVKRLQMRYATSLIGGPSTLATFVAV 106

Query: 62  YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTC 121
           YALFGPTFPG YDK+R VY LFYPGLSFAFPIP QY DCC D EAELPLEFPDGTTPVTC
Sbjct: 107 YALFGPTFPGSYDKDRGVYTLFYPGLSFAFPIPTQYTDCCHDGEAELPLEFPDGTTPVTC 166

Query: 122 RVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASP 181
           RVSIYD S D KVGVGS  +KA AP LP GSLY+EEVH KLGEEL FTVG QHIPFGASP
Sbjct: 167 RVSIYDSSTDSKVGVGSSMEKASAPPLPAGSLYMEEVHVKLGEELRFTVGGQHIPFGASP 226

Query: 182 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIK 241
           QDVWTELGRPCGIHQKQVDQMVIHSASDPRPR+TLCGDYFYNY+ RGLDILFDGQTHKIK
Sbjct: 227 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRTTLCGDYFYNYFDRGLDILFDGQTHKIK 286

Query: 242 KFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDCG 301
           KF++HTNYPGHADFNSY+KCNF+I GSDF G+  EV   K++ITP+TKWEQVKEILGDCG
Sbjct: 287 KFVLHTNYPGHADFNSYMKCNFVIYGSDFGGSFQEVKMSKHRITPSTKWEQVKEILGDCG 346

Query: 302 RAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 344
           RAAIQTQGST+NPFGSTFVYGYQN+AFEVMKNGYI+TVT+FQS
Sbjct: 347 RAAIQTQGSTNNPFGSTFVYGYQNVAFEVMKNGYIATVTLFQS 389




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476646|ref|XP_003631875.1| PREDICTED: UPF0183 protein At3g51130-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356538264|ref|XP_003537624.1| PREDICTED: UPF0183 protein At3g51130-like [Glycine max] Back     alignment and taxonomy information
>gi|449434186|ref|XP_004134877.1| PREDICTED: UPF0183 protein At3g51130-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224134150|ref|XP_002327768.1| predicted protein [Populus trichocarpa] gi|222836853|gb|EEE75246.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449491389|ref|XP_004158881.1| PREDICTED: UPF0183 protein At3g51130-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357483667|ref|XP_003612120.1| hypothetical protein MTR_5g021520 [Medicago truncatula] gi|355513455|gb|AES95078.1| hypothetical protein MTR_5g021520 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224094913|ref|XP_002310289.1| predicted protein [Populus trichocarpa] gi|222853192|gb|EEE90739.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356496677|ref|XP_003517192.1| PREDICTED: UPF0183 protein At3g51130-like [Glycine max] Back     alignment and taxonomy information
>gi|388499418|gb|AFK37775.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query344
TAIR|locus:2080873410 AT3G51130 [Arabidopsis thalian 0.985 0.826 0.802 6.8e-159
DICTYBASE|DDB_G0271880 519 DDB_G0271880 "UPF0183 family p 0.598 0.396 0.386 3.7e-54
FB|FBgn0035877438 CG7083 [Drosophila melanogaste 0.979 0.769 0.371 5.6e-52
RGD|621098422 RGD621098 "similar to RIKEN cD 0.465 0.379 0.439 1.4e-50
UNIPROTKB|Q9BSU1422 C16orf70 "UPF0183 protein C16o 0.494 0.402 0.423 6e-50
MGI|MGI:2443049422 D230025D16Rik "RIKEN cDNA D230 0.465 0.379 0.439 2e-49
WB|WBGene00011344422 T01G9.2a [Caenorhabditis elega 0.456 0.372 0.352 1.7e-37
UNIPROTKB|P34692422 T01G9.2 "UPF0183 protein T01G9 0.456 0.372 0.352 1.7e-37
UNIPROTKB|G4MWK3 526 MGG_01174 "Uncharacterized pro 0.404 0.264 0.285 1.3e-16
ASPGD|ASPL0000038147 516 AN10404 [Emericella nidulans ( 0.264 0.176 0.336 1.8e-13
TAIR|locus:2080873 AT3G51130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
 Identities = 276/344 (80%), Positives = 312/344 (90%)

Query:     2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
             ++PLKLD++ISFPDHGFHLRFDPWSQRLRL+EIFD+KRLQMRYATS+IGG STLATFVAV
Sbjct:    71 EDPLKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAV 130

Query:    62 YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTC 121
             YALFGPTFPG+YDKER +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTC
Sbjct:   131 YALFGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTC 190

Query:   122 RVSIYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASP 181
             RVSIYD S+DKKVGVG L D+A  P LP GSLY+EEVH K G+EL+FTVG QH+PFGASP
Sbjct:   191 RVSIYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVKPGKELYFTVGGQHMPFGASP 250

Query:   182 QDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLCGDYFYNYYTRGLDILFDGQTHKIK 241
             QDVWTELGRPCGIH KQVDQMVIHSASDPRP++T+CGDYFYNY+TRGLDILFDG+THK+K
Sbjct:   251 QDVWTELGRPCGIHPKQVDQMVIHSASDPRPKTTICGDYFYNYFTRGLDILFDGETHKVK 310

Query:   242 KFIMHTNYPGHADFNSYIKCNFII-LGSDFAGTSAEVHSYKNKITPNTKWEQVKEILGDC 300
             KF++HTNYPGHADFNSYIKCNF+I  G+D    +AE +   NKITP+T W+QVKEILG+C
Sbjct:   311 KFVLHTNYPGHADFNSYIKCNFVISAGAD----AAEANRSGNKITPSTNWDQVKEILGEC 366

Query:   301 GRAAIQTQGSTSNPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS 344
             G AAIQTQGSTSNPFGST+VYGYQN+AFEVMKNG+I+T+T+FQS
Sbjct:   367 GPAAIQTQGSTSNPFGSTYVYGYQNVAFEVMKNGHIATITLFQS 410




GO:0005739 "mitochondrion" evidence=ISM
GO:0006914 "autophagy" evidence=RCA
GO:0009610 "response to symbiotic fungus" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
DICTYBASE|DDB_G0271880 DDB_G0271880 "UPF0183 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0035877 CG7083 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|621098 RGD621098 "similar to RIKEN cDNA D230025D16Rik" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSU1 C16orf70 "UPF0183 protein C16orf70" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443049 D230025D16Rik "RIKEN cDNA D230025D16 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00011344 T01G9.2a [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P34692 T01G9.2 "UPF0183 protein T01G9.2" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G4MWK3 MGG_01174 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000038147 AN10404 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SD33U183_ARATHNo assigned EC number0.80230.98540.8268yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
pfam03676395 pfam03676, UPF0183, Uncharacterized protein family 1e-171
>gnl|CDD|217668 pfam03676, UPF0183, Uncharacterized protein family (UPF0183) Back     alignment and domain information
 Score =  481 bits (1239), Expect = e-171
 Identities = 167/371 (45%), Positives = 225/371 (60%), Gaps = 41/371 (11%)

Query: 2   QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAV 61
           ++PL +D++I+ P  G  LRFDP SQRL+LIE+FD+KR++++YA       S L T   V
Sbjct: 37  KDPLSMDLVINLPQDGIRLRFDPVSQRLKLIEVFDLKRVKLKYAGVYFNSPSVLPTIEQV 96

Query: 62  YALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTC 121
           Y  FG T PGVYD    +Y LF+ GLSF+FPI ++Y          L  +FPDG TPV  
Sbjct: 97  YHSFGATHPGVYDASHQLYALFFRGLSFSFPIDSKYTPGFGHGLGSL--KFPDGATPVVS 154

Query: 122 RVSIYDGSADKKVGVGSLFDKAIAPSLPV----GSLYIEEVHA------KLGEELHFTVG 171
           R+SIYDGS            +A  P LP+    G+LY+E V         LG +L     
Sbjct: 155 RMSIYDGSN---------LAEAKVPPLPLSCYLGNLYLESVEVLRDSGGTLGLKLQLVTE 205

Query: 172 --------------SQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLC 217
                         ++HI FG S QDV + LG PC +  K  D+M IHS SD R   + C
Sbjct: 206 GGPGVALEPRVRTFTRHIYFGDSCQDVLSALGSPCKVFYKSEDKMKIHSPSDHRLVQSKC 265

Query: 218 GDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFII-LGSDFAGTSAE 276
            DYF+NY+T GLDILFD QTH++KKF++HTN+PGH +FN Y +CNF+I L +D  GT + 
Sbjct: 266 SDYFFNYFTLGLDILFDAQTHRVKKFVLHTNFPGHYNFNMYHRCNFVIQLPADKDGTDS- 324

Query: 277 VHSYKNKITPNTKWEQVKEILGDCG-RAAIQTQGSTS--NPFGSTFVYGYQNIAFEVMKN 333
             +    ITP +KW+QV EILG+ G R  +  + S++  NPFGSTF YGYQ+I FEVM N
Sbjct: 325 -PTDSPPITPYSKWDQVSEILGNSGERPVVLHRASSTNTNPFGSTFCYGYQDIIFEVMPN 383

Query: 334 GYISTVTMFQS 344
            +I++VT++ +
Sbjct: 384 NHIASVTLYGA 394


This family of proteins includes Lin-10 from C. elegans. Length = 395

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 344
PF03676394 UPF0183: Uncharacterised protein family (UPF0183); 100.0
KOG2819413 consensus Uncharacterized conserved protein [Funct 100.0
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function Back     alignment and domain information
Probab=100.00  E-value=6.3e-118  Score=884.38  Aligned_cols=331  Identities=49%  Similarity=0.892  Sum_probs=302.4

Q ss_pred             CCCCccceEEEcCCCCeEEEecCCCCeEEEEEEeeCCCceEEEcceeccCCCCcceeeeeecccCCCCCCcccCCCceEE
Q 019234            2 QEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYM   81 (344)
Q Consensus         2 ~~Pl~~~ivi~lp~~GirL~Fd~~~QRL~lIEv~d~~~~~L~Y~~~~~~~p~~~~tf~~Iy~~FGPTyPG~y~~~~~~Y~   81 (344)
                      ++|++.||||+||++||||+|||++||||||||+||++++|+|++++|++|++.|||++||++|||||||+||+++++|+
T Consensus        37 ~~P~~~~ivi~l~~~GirL~Fd~~~QrL~lIEv~d~~~i~L~Y~~~~~~~p~~~pTf~~Iy~~FGPTyPG~yd~~~~~Yv  116 (394)
T PF03676_consen   37 QDPLSSDIVINLPENGIRLRFDGPSQRLRLIEVYDFSKIKLRYKGSVFSSPEIGPTFRHIYRLFGPTYPGEYDKSRGTYV  116 (394)
T ss_pred             CCCCcCCEEEEcCCCCeEEEECCCCcEEEEEEEecCccceEEeCcccccCcccCcchheeheccCCCCCCccCCCCCEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeecceEEEEeCCccccccccccCCCccccCCCCCCcceeEEEEEeCCCCcccccCCccccccCCCCCC----CCeeEEE
Q 019234           82 LFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLPV----GSLYIEE  157 (344)
Q Consensus        82 LsYpGvaF~Fpi~~~~~~~~~~~~~~l~l~~~~~~~~~~~~m~I~~~~~~~~~~~G~s~~e~~~p~l~~----g~~~~e~  157 (344)
                      ||||||||+||+++++++.+.++.+  +|+++++++|+|+||+||         +|++|+|+++|++|.    |++|+++
T Consensus       117 LsYpGlaF~Fpi~~~~~~~~~~~~~--sl~~~~~ssp~~tsmaIf---------~G~s~~ear~p~lp~~~~~~~~~~~~  185 (394)
T PF03676_consen  117 LSYPGLAFSFPIPSKFQSSYSDGLD--SLEFPSGSSPVATSMAIF---------SGSSWAEARAPPLPLSCYCGNLYLES  185 (394)
T ss_pred             EEECCEEEEeeCchhhcccccCCcc--eeecCCCCCcceeEEEEE---------cCCchhcccCCCccccccCCCcceee
Confidence            9999999999999988888888753  889999999999999999         999999999998864    8899999


Q ss_pred             EEEEcCC------cEEEEec--------------eeEEEcCCCHHHHHHhcCCCCccccccCCceeeecCCCCCCCCCcC
Q 019234          158 VHAKLGE------ELHFTVG--------------SQHIPFGASPQDVWTELGRPCGIHQKQVDQMVIHSASDPRPRSTLC  217 (344)
Q Consensus       158 v~v~~~~------~l~f~~~--------------~~~I~fG~T~QDVl~eLG~P~~if~K~ddrM~IH~~~~~~~~~~~~  217 (344)
                      |+|...+      .|.|...              +++|+||+|||||++|||||++||||+||||+||++++++...+..
T Consensus       186 v~v~~~~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~qdv~~~lG~P~~~~~k~~d~m~ih~~~~~~~~~~~~  265 (394)
T PF03676_consen  186 VEVLRDNKETVGLELSLVTEGGPGRIEEPRRSNFERWIRFGDTPQDVLSELGPPDRIFYKSDDRMSIHSPSSHKQVPSKP  265 (394)
T ss_pred             EEeeccCCCCcCcEEEEEEcCCCcccccccccCceEEEEeCCCHHHHHHhhCCccceeecccccccccccccccCCccCC
Confidence            9985433      3444332              3699999999999999999999999999999999998888888889


Q ss_pred             CcceeeecccceeEEEeCCcceEEEEEeeeCCCCCcCcCceeeeeeEEeccCCCCCCccccCcccccCCCCChhHHHhhh
Q 019234          218 GDYFYNYYTRGLDILFDGQTHKIKKFIMHTNYPGHADFNSYIKCNFIILGSDFAGTSAEVHSYKNKITPNTKWEQVKEIL  297 (344)
Q Consensus       218 ~dyFyNYF~lGlDiL~d~~th~v~K~ILHtN~PG~y~Fn~Y~RC~f~I~~~~~~~~~~~~~~~~~~it~~~~~~~i~~~l  297 (344)
                      +|||||||+||||||||++||+|||||||||+||||+||+|+||||+|....++..+ +.......|+++++|++|++.|
T Consensus       266 ~~yf~nYf~~G~Dilfd~~~~~v~K~ILHtN~PG~~~Fn~y~rC~f~I~~~~~~~~~-~~~~~~~~i~~~~kwd~i~~~L  344 (394)
T PF03676_consen  266 SDYFYNYFTLGLDILFDGNTHRVKKFILHTNIPGHYDFNRYNRCNFEIELSNDSNET-DSPTNSPMITPYTKWDDIQEIL  344 (394)
T ss_pred             CCEEEeccccceEEEEeCCCceEEEEEEecCCCCCccccceeeeeeEEEecCccccc-ccccccceeeccCCHhHhHHhh
Confidence            999999999999999999999999999999999999999999999999997644322 2222233599999999999999


Q ss_pred             CCCC-CceEecCCCCC--CCCcceEEeeeCCeEEEEecCCceEEEEEeeC
Q 019234          298 GDCG-RAAIQTQGSTS--NPFGSTFVYGYQNIAFEVMKNGYISTVTMFQS  344 (344)
Q Consensus       298 ~~~~-rpvvlnR~~~~--npfGsT~lyG~~~iifEVm~N~~IasvTlf~~  344 (344)
                      .... |||||+|++++  ||||+|+||||+|||||||+||+|||||||+.
T Consensus       345 ~~~~~~pvvl~r~s~~n~npfGsT~~yG~~~~IfEVm~n~~IasVTly~~  394 (394)
T PF03676_consen  345 GKAEDRPVVLNRASSSNDNPFGSTFLYGYQGIIFEVMKNGHIASVTLYQA  394 (394)
T ss_pred             cccccCCcccccccccCCCCCcceeEeCCCCEEEEEecCCcEEEEEEecC
Confidence            7655 99999999886  99999999999999999999999999999973



>KOG2819 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query344
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.2 bits (119), Expect = 7e-07
 Identities = 67/384 (17%), Positives = 108/384 (28%), Gaps = 122/384 (31%)

Query: 1   MQEPLKLDIIISF---PDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLI-------- 49
           M + L   I  ++    DH  +++    S +  L  +         Y   L+        
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL----KSKPYENCLLVLLNVQNA 256

Query: 50  -------GGSSTLAT--FVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADC 100
                       L T  F  V              +    M   P    +  +  +Y DC
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKS--LLLKYLDC 313

Query: 101 CQDREAELPLEFPDGTTPVTCRV---SIYDGSA----------DK-----KVGVGSL--- 139
              R  +LP E      P    +   SI DG A          DK     +  +  L   
Sbjct: 314 ---RPQDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 140 -----FDK-AIAPS---LPVGSLYI------EEVHAKLGEELH-----------FTVGSQ 173
                FD+ ++ P    +P   L +      +     +  +LH            T+   
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--- 426

Query: 174 HIPFGASPQDVWTELGRPC----GIHQKQVDQMVIHSASDPRPRSTLCGD-YFYNYYTRG 228
            IP       ++ EL         +H+  VD   I    D         D YFY++    
Sbjct: 427 SIP------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 229 LDILFDGQTHKIKKF-------------IMHTNYPGHADFNSYIKCNFIILGSDFAGTSA 275
           L  +      ++  F             I H +   +A                   T  
Sbjct: 481 LKNI--EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS-------------GSILNTLQ 525

Query: 276 EVHSYKNKITPN-TKWEQ-VKEIL 297
           ++  YK  I  N  K+E+ V  IL
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAIL 549


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00